Citrus Sinensis ID: 006654

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630------
Protein Sequence
MDTDIDDTCKAKDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDIRLEPSVSQDHSEDVHGNYISTGDKIKRDGGHEYEQSKKCKTQNEVGTDINLSRAANLSADNEKIGVSTSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKVHPSDNLPPGTLLCICLSSINKCVKFSFLIIGSETHFGAVTI
Secondary Structure (PSIPRED)
cccccccccccccHHcccccEEEEEEccccccHHHHHHHHHHHccccEEEEEcccccccccccHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHccccccEEEEEEcccHHHHHHHHHHHHccccccccccHHHHHHHHHHccccccccccccEEEEcccHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccEEEEEEEccccHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccEEEEccccccccccccHHHHHHHHHcHHHHHHHHHHHHccccccEEEEcccccccccccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccEEEcccEEEEEccccccccccccccccccHHHHHHccccEEEEEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHcccccccEEEEEEccccccHHHHHHHHHccccccEEEEcHHHccccccccHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccccHccccEEEEEccHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccHHcccccccccccccccccccHccccccccEEccccccccccccccEcccccccccccccHHHHHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHHHHcccccccEEEEccHEEEcccccccEEEEEccccccccccccHHHHHHHHHccHHHHHHHHHHHcccccccEEEEEcccccccccccccEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEcEcccccccccccEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcHHHccccEEEEcccEEEEcccccccccccccccccEEHHHHHHHHHcEEEEEEEEEccccccEEEc
Coil and Loop (DISEMBL)
MDTDIDDTCKAKDEEKKWKQILVIMVgapgsgkstFCEHVMRSSARPWARICQDtinkgksgtkvQCLTSASSAlkkgksvfldrcnlereqrtdfvklggpevdvHAVVLDLPAKLCISRSVKRiehegnlqggKAAAVVNRMLQkkelpklsegfsriTLCQNENDVQAALDtysglgpldtlphgsfgqknpdAKIQLGIMKFLkkvdapsntgstasstqdpvppqiteeknsclegqEITSLLSdaageevkgtenpevasvnqngsssdvptlafpslstsdfqfnnekaSDVIIEKVEEFVNKLGNARLVLVDLTQGSKILSLVRAKAAQkhinpkkfftfvgDITRLYTGGGLCCNVIANAanwrlkpggggvnaAIFSAAGPALEVATAErakslypgnsvivplpstsplcgregvTHVIHvlgpnmnprrpncldgdyvKGCEILRKAYTSLFEGFLSIVRSQEKlskgcnedirlepsvsqdhsedvhgnyistgdkikrdggheyeqskkcktqnevgtdinlsraanlsadnekigvstSKAWGSWAQALYRTamyperhkddlleisddvvvlndlypkvhpsdnlppgtlLCICLSSINKCVKFSFLIigsethfgavti
Flexible Loop (DISEMBL)
mdtdiddtckakdeekkwkQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTinkgksgtkvQCLTSassalkkgksvfldrcnLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRiehegnlqggkaaAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFGQKNPDAKIQLGIMKFLKKVDAPSNTgstasstqdpvppQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLTQGSKILSLVRAkaaqkhinpkkfftfvGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHvlgpnmnprrpnCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDIRlepsvsqdhsedvhgnYISTGDKIKRDGGHEyeqskkcktqnevgtdinlsraanlsadnekigvstskawgsWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKvhpsdnlpPGTLLCICLSSINKCVKFSFLIIgsethfgavti
Low Complexity Region (SEG)
MDTDIDDTCKAKDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDIRLEPSVSQDHSEDVHGNYISTGDKIKRDGGHEYEQSKKCKTQNEVGTDINLSRAANLSADNEKIGVSTSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKVHPSDNLPPGTLLCICLSSINKCVKFSFLIIGSETHFGAVTI
Disordered region (IsUnstruct)
****************KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN***********************************RTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ******LSEGFSRITLCQNENDVQAALDTYSGLGPLDTL************KIQLGIMKFL***************************************************************************************KASDVIIEKVEEFVNKLGNARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRS***************************************************************************IGVSTSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKVHPSDNLPPGTLLCICLSSINKCVKFSFLIIGSETHFGA***
Disordered Region (DISOPRED)
********************ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVK**********GKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLG*************************************************************************************************************QFNNEKASDVIIEKVEEFVNKLGNARLVLVDLTQGSKILS********KHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVR****************************************************************************************AQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKVHPSDNLPPGTLLCICLSSINKCVKFSFLIIGSETHFGAVTI
Disordered Region (DISEMBL)
MDTDIDDTCKAKDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFGQKNPDAKIQLGIMKFLKKV*******************QITEEKNSCLEGQEITSLLSDA**********PEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDIRLEP********DVHGNYISTGDKIKRDGGHEYEQSKKCKTQNEVGTDINLSRAANLSADNEKIGVSTSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKVHPSDNLPPGTLLCICLSSINKCVKFSFLIIGSETHFGAVTI
Disordered Region (DISPRO)
*****************WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFGQKNPDAKIQLGIMKFLKKVD************************************************************SSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRS*********************************************************************************KAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKVHPSDNLPPGTLLCICLSSINKCVKFSFLIIGSETHFGAVTI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDTDIDDTCKAKDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDIRLEPSVSQDHSEDVHGNYISTGDKIKRDGGHEYEQSKKCKTQNEVGTDINLSRAANLSADNEKIGVSTSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKVHPSDNLPPGTLLCICLSSINKCVKFSFLIIGSETHFGAVTI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	636	2.2.26 [Sep-21-2011]
Q9M041	912	Transcription factor bHLH	yes	no	0.831	0.580	0.568	0.0
O13911	408	Bifunctional polynucleoti	yes	no	0.207	0.323	0.295	1e-07
Q5UQD2	421	Putative bifunctional pol	N/A	no	0.207	0.313	0.299	2e-07
Q19683	407	Uncharacterized protein F	yes	no	0.207	0.324	0.290	4e-06
Q96T60	521	Bifunctional polynucleoti	yes	no	0.205	0.251	0.292	0.0001
Q9JLV6	522	Bifunctional polynucleoti	yes	no	0.205	0.250	0.264	0.0001
C9Y0V8	176	O-acetyl-ADP-ribose deace	yes	no	0.113	0.409	0.404	0.0004

>sp|Q9M041|BH140_ARATH Transcription factor bHLH140 OS=Arabidopsis thaliana GN=BHLH140 PE=4 SV=1

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/582 (56%), Positives = 414/582 (71%), Gaps = 53/582 (9%)

Query: 14  EEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASS 73
           E  K KQI+V+++G PGSGKSTFC+  MRSS RPW+RICQD +N GK+GTK QCL  A+ 
Sbjct: 221 EADKAKQIVVLLIGPPGSGKSTFCDTAMRSSHRPWSRICQDIVNNGKAGTKAQCLKMATD 280

Query: 74  ALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQ 133
           +L++GKSVF+DRCNL+REQR++F+KLGGPE +VHAVVL+LPA++CISRSVKR  HEGNLQ
Sbjct: 281 SLREGKSVFIDRCNLDREQRSEFIKLGGPEFEVHAVVLELPAQVCISRSVKRTGHEGNLQ 340

Query: 134 GGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFGQK 193
           GG+AAAVVN+MLQ KELPK++EGFSRI  C ++ DV  A++ Y+ LGP+DTLP G FG+K
Sbjct: 341 GGRAAAVVNKMLQSKELPKVNEGFSRIMFCYSDADVDNAVNMYNKLGPMDTLPSGCFGEK 400

Query: 194 NPDAKIQLGIMKFLKKVDA-PSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAA 252
             D K Q GIMKF KKV A P+++ + A+              N+  +  E+T+      
Sbjct: 401 KLDTKSQPGIMKFFKKVSALPASSSNEAT--------------NTTRKADEMTA------ 440

Query: 253 GEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG 312
                   N  V+ V + GS+  VPTLAFPS+ST+DFQF+ EKASD+I+EK EEF++KLG
Sbjct: 441 --------NVRVSPV-KLGSADIVPTLAFPSISTADFQFDLEKASDIIVEKAEEFLSKLG 491

Query: 313 NARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANW 372
            ARLVLVDL++GSKILSLV+AKA+QK+I+  KFFTFVGDIT+L + GGL CNVIANA NW
Sbjct: 492 TARLVLVDLSRGSKILSLVKAKASQKNIDSAKFFTFVGDITKLRSEGGLHCNVIANATNW 551

Query: 373 RLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHV 432
           RLKPGGGGVNAAIF AAGP LE AT  RA +L PG +V+VPLPST PL   EG+THVIHV
Sbjct: 552 RLKPGGGGVNAAIFKAAGPDLETATRVRANTLLPGKAVVVPLPSTCPLHNAEGITHVIHV 611

Query: 433 LGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDIRLEPSVS 492
           LGPNMNP RP+ L+ DY KGC+ LR+AYTSLFEGFLS+V+ Q KL K      R   +  
Sbjct: 612 LGPNMNPNRPDNLNNDYTKGCKTLREAYTSLFEGFLSVVQDQSKLPK------RSSQTAV 665

Query: 493 QDHSEDVHGNYISTGDKIKRDGGHEYEQSKKCKTQNEVGTDINLSRAANLSADNEKIGVS 552
            D  ED           IK D     E++KK K   +     NL   +    D    G  
Sbjct: 666 SDSGED-----------IKEDS----ERNKKYKGSQDKAVTNNLESES--LEDTRGSGKK 708

Query: 553 TSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPK 594
            SK W +WA AL+  AM+PERH++ +LE  D++VV+ND YPK
Sbjct: 709 MSKGWNTWALALHSIAMHPERHENVVLEYLDNIVVINDQYPK 750

Arabidopsis thaliana (taxid: 3702)

>sp|O13911|PNK1_SCHPO Bifunctional polynucleotide phosphatase/kinase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pnk1 PE=1 SV=2

 Score = 58.9 bits (141), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 10/142 (7%)

Query: 20  QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGK 79
           Q +V++VG P SGKST  E  + +    + R+ QD +      TK +C+ +A  ALKK K
Sbjct: 256 QEIVVLVGFPSSGKSTLAESQIVTQG--YERVNQDILK-----TKSKCIKAAIEALKKEK 308

Query: 80  SVFLDRCNLEREQRTDFVKLGGP-EVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAA 138
           SV +D  N   E R  ++ +    E+ +  + L    +L    +V R  H    Q  + A
Sbjct: 309 SVVIDNTNPTIESRKMWIDIAQEFEIPIRCIHLQSSEELARHNNVFRYIHHNQKQLPEIA 368

Query: 139 AVVNRMLQKKELPKLSEGFSRI 160
              N    + ++P + EGF+ +
Sbjct: 369 --FNSFKSRFQMPTVEEGFTNV 388

Catalyzes the phosphorylation of DNA at 5'-hydroxyl termini and can dephosphorylate its 3'-phosphate termini. Has a role in the repair of breaks in single stranded DNA.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 8

>sp|Q5UQD2|PNKP_MIMIV Putative bifunctional polynucleotide phosphatase/kinase OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L469 PE=3 SV=1

 Score = 58.5 bits (140), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 74/147 (50%), Gaps = 15/147 (10%)

Query: 19  KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKG 78
           K+ +++M+G PGSGKS F ++ +  +   +  I QD     K  TK +CL+   +AL KG
Sbjct: 257 KKEMIVMIGQPGSGKSFFVKNYILPNG--YVHINQD-----KCKTKAKCLSETENALSKG 309

Query: 79  KSVFLDRCN---LEREQRTDFVKLGGPEVDVHAVVLDLPAKLCIS-RSVKRIEHEGNLQG 134
           KSV +D  N   + R   T+  K    +  V A++++ P +L     +V+ I   G +  
Sbjct: 310 KSVVIDNTNPDVISRMTYTNLAKENNYD-HVRAIIMETPDELAKHLNNVRHIYSSGTV-- 366

Query: 135 GKAAAVVNRMLQKKE-LPKLSEGFSRI 160
            K   +   + +K   LP+  E F +I
Sbjct: 367 PKVTDIAYNIYRKNFVLPQYEENFDKI 393

Acanthamoeba polyphaga (taxid: 5757)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 8

>sp|Q19683|YZR5_CAEEL Uncharacterized protein F21D5.5 OS=Caenorhabditis elegans GN=F21D5.5 PE=2 SV=2

 Score = 53.5 bits (127), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 9/141 (6%)

Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSV 81
           +++MVG PGSGKSTF +  M      +  + +DTI     GT  +C+ +  S L  GKSV
Sbjct: 252 IILMVGFPGSGKSTFAK--MLGHQHDYKIVNRDTI-----GTWQKCVAATRSYLADGKSV 304

Query: 82  FLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141
            +D  + + E R  ++ +   E+ V     ++   +  ++   R     +    + +++V
Sbjct: 305 VIDNTSPDLESRKRYIDV-AKELGVPIRCFEMNCSMEHAQHNIRFRVLTDDNAAEISSMV 363

Query: 142 NRMLQKKEL-PKLSEGFSRIT 161
            R+ + K + P LSEGFS+I 
Sbjct: 364 LRIHKGKYVEPTLSEGFSQIV 384

Caenorhabditis elegans (taxid: 6239)

>sp|Q96T60|PNKP_HUMAN Bifunctional polynucleotide phosphatase/kinase OS=Homo sapiens GN=PNKP PE=1 SV=1

 Score = 48.9 bits (115), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 9/140 (6%)

Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSV 81
           +V+ VG PG+GKSTF +  + S+   +  + +DT+     G+  +C+T+  +ALK+GK V
Sbjct: 367 VVVAVGFPGAGKSTFLKKHLVSAG--YVHVNRDTL-----GSWQRCVTTCETALKQGKRV 419

Query: 82  FLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141
            +D  N +   R  +V+       V        A L  +R   R     +      + +V
Sbjct: 420 AIDNTNPDAASRARYVQCAR-AAGVPCRCFLFTATLEQARHNNRFREMTDSSHIPVSDMV 478

Query: 142 NRMLQKK-ELPKLSEGFSRI 160
               +K+ E P L+EGFS I
Sbjct: 479 MYGYRKQFEAPTLAEGFSAI 498

Catalyzes the phosphorylation of DNA at 5'-hydroxyl termini and can dephosphorylate its 3'-phosphate termini. Plays an important function in DNA repair following ionizing radiation or oxidative damage.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 8

>sp|Q9JLV6|PNKP_MOUSE Bifunctional polynucleotide phosphatase/kinase OS=Mus musculus GN=Pnkp PE=1 SV=2

 Score = 48.9 bits (115), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 9/140 (6%)

Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSV 81
           +V+ VG PG+GKSTF +  + S+   +  + +DT+     G+  +C++S  +AL++GK V
Sbjct: 366 VVVAVGFPGAGKSTFIQEHLVSAG--YVHVNRDTL-----GSWQRCVSSCQAALRQGKRV 418

Query: 82  FLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141
            +D  N +   R  +++    +  V     +  A +  +R   R     +      + +V
Sbjct: 419 VIDNTNPDVPSRARYIQCAK-DAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMV 477

Query: 142 NRMLQKK-ELPKLSEGFSRI 160
               +K+ E P L+EGF  I
Sbjct: 478 MFSYRKQFEPPTLAEGFLEI 497

Catalyzes the phosphorylation of DNA at 5'-hydroxyl termini and can dephosphorylate its 3'-phosphate termini. Plays an important function in DNA repair following ionizing radiation or oxidative damage.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 8

>sp|C9Y0V8|YMDB_CROTZ O-acetyl-ADP-ribose deacetylase OS=Cronobacter turicensis (strain DSM 18703 / LMG 23827 / z3032) GN=ymdB PE=3 SV=1

 Score = 47.0 bits (110), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 45/89 (50%), Gaps = 17/89 (19%)

Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVA---TAERAKSLYP 406
           GDITR+ T      +VI NAAN  L  GGGGV+ AI  AAGP+L  A     ++     P
Sbjct: 10  GDITRIDT------DVIVNAANPSLM-GGGGVDGAIHRAAGPSLLAACKVVRQQQGECQP 62

Query: 407 GNSVIVPLPSTSPLCGREGVTHVIHVLGP 435
           G++VI          G      VIH +GP
Sbjct: 63  GHAVITE-------AGDLAAKAVIHTVGP 84

Deacetylates O-acetyl-ADP ribose. Down-regulates ribonuclease 3 (RNase III) activity. Acts by interacting directly with the region of the ribonuclease that is required for dimerization/activation.

Cronobacter turicensis (strain DSM 18703 / LMG 23827 / z3032) (taxid: 693216)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	636
359481176	734	PREDICTED: transcription factor bHLH140-	0.877	0.760	0.667	0.0
147867251	864	hypothetical protein VITISV_005888 [Viti	0.910	0.670	0.652	0.0
224140455	718	predicted protein [Populus trichocarpa]	0.864	0.766	0.659	0.0
255579308	749	aprataxin, putative [Ricinus communis] g	0.853	0.724	0.672	0.0
357438365	639	Transcription factor bHLH140, partial [M	0.915	0.910	0.606	0.0
356496191	734	PREDICTED: transcription factor bHLH140-	0.875	0.758	0.616	0.0
296081123	678	unnamed protein product [Vitis vinifera]	0.798	0.749	0.609	0.0
449440255	712	PREDICTED: transcription factor bHLH140-	0.844	0.754	0.614	0.0
449483719	712	PREDICTED: transcription factor bHLH140-	0.844	0.754	0.614	0.0
297810265	898	basic helix-loop-helix family protein [A	0.850	0.602	0.557	0.0

>gi|359481176|ref|XP_002270443.2| PREDICTED: transcription factor bHLH140-like [Vitis vinifera]

 Score =  778 bits (2009), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/586 (66%), Positives = 459/586 (78%), Gaps = 28/586 (4%)

Query: 11  AKDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTS 70
           +K+ E + K I+V+++GAPGSGKSTFCEHV+RSS RPW R+CQDTI  GK+GTK QCL S
Sbjct: 7   SKEGEGQGKPIVVLLMGAPGSGKSTFCEHVIRSSTRPWVRVCQDTIGNGKAGTKSQCLKS 66

Query: 71  ASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEG 130
           A+SAL+ GKSVF+DRCNL+REQR +FVKLG P+V++HAVVLDLPA+LCISRSVKR  HEG
Sbjct: 67  ATSALEDGKSVFIDRCNLDREQRAEFVKLGSPQVEMHAVVLDLPAQLCISRSVKRTGHEG 126

Query: 131 NLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSF 190
           NLQGGKAAAVVNRMLQKKELPKLSEGF RIT CQN++DVQ AL+TYS L  LDTLP G F
Sbjct: 127 NLQGGKAAAVVNRMLQKKELPKLSEGFHRITFCQNDSDVQTALNTYSALSHLDTLPPGCF 186

Query: 191 GQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSD 250
           GQKNPDAKIQLGIMKFLKKV+ P N G   SS                          S 
Sbjct: 187 GQKNPDAKIQLGIMKFLKKVEVPVNVGEDISS--------------------------SS 220

Query: 251 AAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNK 310
              +E+KG E+  V SV+   SS D+PTLAFPS+ST+DFQFN+EKA+D+I+EKVEEFVNK
Sbjct: 221 GNAKEIKGGEDIVVHSVDGTVSSKDIPTLAFPSISTADFQFNHEKAADIILEKVEEFVNK 280

Query: 311 LGNARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAA 370
           + NARLVLVDL+ GSKILSLVRAKAAQ++I+  KFFTFVGDITRLY+ GGL CN IANAA
Sbjct: 281 VENARLVLVDLSHGSKILSLVRAKAAQRNIDSNKFFTFVGDITRLYSKGGLRCNAIANAA 340

Query: 371 NWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVI 430
           NWRLKPGGGG NAAIFSAAGP LEV T +RA SL PG +++VPLPSTSPL  REGVTHVI
Sbjct: 341 NWRLKPGGGGANAAIFSAAGPELEVETKKRAGSLIPGKALVVPLPSTSPLFSREGVTHVI 400

Query: 431 HVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDIRLEPS 490
           HVLGPNMN +RPNCL+ DYVKG ++LR+AYTSLFEGF SI+ +Q  L +G +E++R E S
Sbjct: 401 HVLGPNMNRQRPNCLNNDYVKGSKVLREAYTSLFEGFASIMNTQGNLLEGSSENLRSELS 460

Query: 491 VSQDHSEDVHGNYISTGD-KIKRDGGHEYEQSKKCK-TQNEVGTDINLSRAANLSADNEK 548
           VSQDH +  H   +   D KIKR G +E E SKKCK  Q+E   D   S+      +NEK
Sbjct: 461 VSQDHFKGNHIKNVPNHDQKIKRVGVYESETSKKCKGFQDEHEFDCTESKEGKDKLNNEK 520

Query: 549 IGVSTSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPK 594
           IG + +K WGSWAQ+LY  AM+PE+HKD+L+EISDDVVVLNDLYPK
Sbjct: 521 IGRNMTKTWGSWAQSLYHIAMHPEKHKDNLIEISDDVVVLNDLYPK 566

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147867251|emb|CAN83280.1| hypothetical protein VITISV_005888 [Vitis vinifera]

 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/604 (65%), Positives = 466/604 (77%), Gaps = 25/604 (4%)

Query: 15  EKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSA 74
           E + K I+V+++GAPGSGKSTFCEHV+RSS RPW R+CQDTI  GK+GTK QCL SA+SA
Sbjct: 101 EGQGKPIVVLLMGAPGSGKSTFCEHVIRSSTRPWVRVCQDTIGNGKAGTKSQCLKSATSA 160

Query: 75  LKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQG 134
           L+ GKSVF+DRCNL+REQR +FVKLG P+V++HAVVLDLPA+LCISRSVKR  HEGNLQG
Sbjct: 161 LEDGKSVFIDRCNLDREQRAEFVKLGSPQVEMHAVVLDLPAQLCISRSVKRTGHEGNLQG 220

Query: 135 GKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFGQKN 194
           GKAAAVVNRMLQKKELPKLSEGF RIT CQN++DVQ AL+TYS L  LDTLP G FGQKN
Sbjct: 221 GKAAAVVNRMLQKKELPKLSEGFHRITFCQNDSDVQTALNTYSALSHLDTLPPGCFGQKN 280

Query: 195 PDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGE 254
           PDAKIQLGIMKFLKKV+ P N G  A+  + P+  QIT+  +SC +  E  S  S    +
Sbjct: 281 PDAKIQLGIMKFLKKVEVPVNVGPDANFPKHPLSTQITKXXDSCCKQPEDIS-SSSGNXK 339

Query: 255 EVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNA 314
            +KG E+  V SV+   SS D+PTLAFPS+ST+DFQFN+EKA+D+I+EKVEEFVNK+ NA
Sbjct: 340 XIKGGEDIVVHSVDGTVSSKDIPTLAFPSISTADFQFNHEKAADIILEKVEEFVNKVENA 399

Query: 315 RLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAAN--- 371
           RLVLVDL+ GSKILSLVRAKAAQ++I+  KFFTFVGDITRLY+ GGL CN IANAAN   
Sbjct: 400 RLVLVDLSHGSKILSLVRAKAAQRNIDSNKFFTFVGDITRLYSKGGLRCNAIANAANCKF 459

Query: 372 -------------------WRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIV 412
                               RLKPGGGG NAAIFSAAGP LEV T +RA SL PG +++V
Sbjct: 460 PFVGLICMSRRSFEKASPCRRLKPGGGGANAAIFSAAGPELEVETKKRAGSLIPGKALVV 519

Query: 413 PLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVR 472
           PLPSTSPL  REGVTHVIHVLGPNMN +RPNCL+ DYVKG ++LR+AYTSLFEGF SI+ 
Sbjct: 520 PLPSTSPLFSREGVTHVIHVLGPNMNRQRPNCLNNDYVKGSKVLREAYTSLFEGFASIMN 579

Query: 473 SQEKLSKGCNEDIRLEPSVSQDHSEDVHGNYISTGD-KIKRDGGHEYEQSKKCK-TQNEV 530
           +Q  L +G +E++R E SVSQDH +  H   +   D KIKR G +E E SKKCK  Q+E 
Sbjct: 580 TQGNLLEGSSENLRSELSVSQDHFKGNHIKNVPNHDQKIKRVGVYESETSKKCKGFQDEH 639

Query: 531 GTDINLSRAANLSADNEKIGVSTSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLND 590
             D   S+      +NEKIG + +K WGSWAQ+LY  AM+PE+HKD+L+EISDDVVVLND
Sbjct: 640 EFDCTESKEGKDXLNNEKIGRNMTKTWGSWAQSLYHIAMHPEKHKDNLIEISDDVVVLND 699

Query: 591 LYPK 594
            YPK
Sbjct: 700 XYPK 703

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140455|ref|XP_002323598.1| predicted protein [Populus trichocarpa] gi|222868228|gb|EEF05359.1| predicted protein [Populus trichocarpa]

 Score =  761 bits (1966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/585 (65%), Positives = 453/585 (77%), Gaps = 35/585 (5%)

Query: 14  EEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASS 73
           E++K K ++VI+VGAPGSGKSTFCEHVM SS RPW RICQDTIN GK+GTK QCL  A++
Sbjct: 1   EQQKGKPVMVILVGAPGSGKSTFCEHVMGSSLRPWTRICQDTINNGKAGTKPQCLKRAAA 60

Query: 74  ALKKGKSVFLDRCNLEREQRTDFVKLG-GPEVDVHAVVLDLPAKLCISRSVKRIEHEGNL 132
           ALK+GKSVF+DRCNL++EQR+DFVKL  G +VDVHAVVLDLPA+LCISRSVKR  HEGNL
Sbjct: 61  ALKEGKSVFIDRCNLDKEQRSDFVKLDCGAQVDVHAVVLDLPAQLCISRSVKRTGHEGNL 120

Query: 133 QGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFGQ 192
           QGGKAAAVVNRMLQKKELPKL+EGF+RI  C NENDV+A +  Y+ LGPLDTL +G FGQ
Sbjct: 121 QGGKAAAVVNRMLQKKELPKLNEGFARIVFCHNENDVEATIKAYTALGPLDTLSNGCFGQ 180

Query: 193 KNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAA 252
           KNPDAKIQLGIMKFLKKV+APS+ GS A+S                              
Sbjct: 181 KNPDAKIQLGIMKFLKKVEAPSSLGSCAAS------------------------------ 210

Query: 253 GEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG 312
            ++VK +E+    SV+ + S  D+ TLAFPS+ST+DFQFNNEKASD+I+EKVEEFVNKL 
Sbjct: 211 -KDVKESEDLAKDSVDADVSVGDITTLAFPSISTADFQFNNEKASDIIVEKVEEFVNKLE 269

Query: 313 NARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANW 372
           NAR VLVDL+ GSKILSLVRAKAA+++I+ KKFFTFVGDITRLY+ GGL CN IANAANW
Sbjct: 270 NARFVLVDLSHGSKILSLVRAKAAKRNIDSKKFFTFVGDITRLYSQGGLRCNAIANAANW 329

Query: 373 RLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHV 432
           RLKPGGGGVNAAIF+AAGP+LE AT ERAKSL PG++V+VPLPS SPL  RE V+HVIHV
Sbjct: 330 RLKPGGGGVNAAIFAAAGPSLETATKERAKSLLPGHAVVVPLPSDSPLYTREEVSHVIHV 389

Query: 433 LGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDIRLEPSVS 492
           LGPNMNP+RPN L+ DY KGC ILR+AYTSLF GFLSIVRS+ KL +   E +   PS  
Sbjct: 390 LGPNMNPQRPNSLNNDYTKGCSILREAYTSLFTGFLSIVRSRSKLPRRIIEKLESSPSDL 449

Query: 493 QDHSEDVHGNYISTGDKIKRDGGHEYEQSKKCK-TQNEVGTDINL--SRAANLSADNEKI 549
           +D S     +  ++  KIKRD    YE+SKKCK T +E   DI+   S    ++ D  K+
Sbjct: 450 KDPSHGPRNHLTNSDQKIKRDDDCVYERSKKCKGTHDETVADISAPSSTYGKVTGDKSKL 509

Query: 550 GVSTSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPK 594
              TSK+WGSWAQALY  AM+PE+HKD LLE+ DDVVVLNDLYPK
Sbjct: 510 EGPTSKSWGSWAQALYHIAMHPEKHKDKLLEVLDDVVVLNDLYPK 554

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579308|ref|XP_002530499.1| aprataxin, putative [Ricinus communis] gi|223529956|gb|EEF31883.1| aprataxin, putative [Ricinus communis]

 Score =  761 bits (1966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/581 (67%), Positives = 458/581 (78%), Gaps = 38/581 (6%)

Query: 20  QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGK 79
           QI+V++VG PGSGKSTFC+HVM SS+RPW+RICQDTIN GK+GTK QCL SA +ALK+GK
Sbjct: 34  QIVVLLVGPPGSGKSTFCDHVMSSSSRPWSRICQDTINNGKAGTKPQCLKSAVNALKEGK 93

Query: 80  SVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAA 139
           SVF+DRCNL++EQR +FVKL   ++DVHAVVLDLPA+LCISRSVKR  HEGNLQGGKAAA
Sbjct: 94  SVFIDRCNLDKEQRAEFVKLADSQIDVHAVVLDLPAQLCISRSVKRTAHEGNLQGGKAAA 153

Query: 140 VVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFGQKNPDAKI 199
           VVNRMLQKKELPKLSEGFSRI  C NE+DVQAA+D YS LGPLD LP+GSFGQK PDAK+
Sbjct: 154 VVNRMLQKKELPKLSEGFSRIMFCPNESDVQAAIDMYSALGPLDILPNGSFGQKKPDAKV 213

Query: 200 QLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGT 259
           Q GIMKFLKKVDAPSN GS  +                          LS    +EVK +
Sbjct: 214 QQGIMKFLKKVDAPSNVGSNIA--------------------------LSATTSKEVKES 247

Query: 260 ENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLV 319
           E+    S+  +  S  +PTLAFPS+ST+DFQF+NEKASD+I+EKVEEFV KLGNARLVLV
Sbjct: 248 EDLIKGSICHDEDS--IPTLAFPSISTADFQFHNEKASDIIVEKVEEFVKKLGNARLVLV 305

Query: 320 DLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGG 379
           DL+QGSKILSLVRAKAAQ++I+  KFFTFVGDIT+L + GGL CNVIANAANWRLKPGGG
Sbjct: 306 DLSQGSKILSLVRAKAAQRNISTNKFFTFVGDITQLLSQGGLRCNVIANAANWRLKPGGG 365

Query: 380 GVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNP 439
           GVNAAI+SAAGPALEVAT E A SL PG++V+VPLPS SPL  REGV+H+IHVLGPNMNP
Sbjct: 366 GVNAAIYSAAGPALEVATKELATSLLPGHAVVVPLPSNSPLYHREGVSHIIHVLGPNMNP 425

Query: 440 RRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDIRLEPSVSQDHSEDV 499
           +RPNCL+GDY KGC+IL  AYTSLF GF+SI+++Q K  K   E++  + S+ QD S D+
Sbjct: 426 QRPNCLNGDYAKGCKILSDAYTSLFGGFVSILQNQAKSGKS-RENLVSDQSL-QDMSHDI 483

Query: 500 HGNYISTGD-KIKRDGGHEYEQSKKCK-TQNEVGTDINLSRA----ANLSADNEKIGVST 553
             N ++ GD KIKRD  +  E+SKK K +QNE  T +N + +      +S DN KI  ST
Sbjct: 484 PRNILTNGDQKIKRDDDYMTEKSKKYKGSQNE--TRVNSTGSGCTYGKISRDNSKIDGST 541

Query: 554 SKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPK 594
           SK+W SWAQALY  AM PERHKD+LLEISDDVVVLNDLYPK
Sbjct: 542 SKSWNSWAQALYHIAMRPERHKDELLEISDDVVVLNDLYPK 582

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357438365|ref|XP_003589458.1| Transcription factor bHLH140, partial [Medicago truncatula] gi|355478506|gb|AES59709.1| Transcription factor bHLH140, partial [Medicago truncatula]

 Score =  723 bits (1867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/600 (60%), Positives = 452/600 (75%), Gaps = 18/600 (3%)

Query: 1   MDTDIDDTCKAKDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK 60
           MD D+D+        K  K ILVI+VGAPGSGKSTFCE VMRSS+R W R+CQDTI  GK
Sbjct: 1   MDMDLDNN-------KDAKPILVILVGAPGSGKSTFCEEVMRSSSRTWLRVCQDTIGNGK 53

Query: 61  SGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGG-PEVDVHAVVLDLPAKLCI 119
           +G+K QCL+SA+  LK GKSVF+DRCNL REQR+DF+KL G  ++D+HAVVLDLPAKLCI
Sbjct: 54  AGSKAQCLSSAARGLKDGKSVFIDRCNLNREQRSDFLKLRGESQIDIHAVVLDLPAKLCI 113

Query: 120 SRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGL 179
           SRSVKR  HEGNLQGGKAAAVVNRMLQ KELPKLSEGF+RIT CQ+E++V+ A+DTY  L
Sbjct: 114 SRSVKRSGHEGNLQGGKAAAVVNRMLQSKELPKLSEGFNRITFCQSESNVKDAIDTYQKL 173

Query: 180 GPLDTLPHGSFGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCL 239
           GPL+ L HG FGQKNPD+KIQ  IMKFLKK + P +T S  ++  D       +  + C 
Sbjct: 174 GPLENLSHGCFGQKNPDSKIQSSIMKFLKKAEVPVDTASKENTIGDSTSQTSGKNDSLCK 233

Query: 240 EGQEITSLLSDA--AGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKAS 297
           + ++I S   ++    ++++G  N    S +   S  D PTLAFPS+ST+DFQFN++KA+
Sbjct: 234 DMEKIPSAHDNSKLGSKDIEGQTNIPAGSCHNQVSLDDTPTLAFPSISTADFQFNHDKAA 293

Query: 298 DVIIEKVEEFVNKLGNARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYT 357
           D+I+EKV E+ NK+ NARLVLVDLT  SKILSLV++KAA+K+++ +KFFT VGDITRLY+
Sbjct: 294 DIIVEKVVEYSNKMENARLVLVDLTHRSKILSLVKSKAAEKNVDTQKFFTHVGDITRLYS 353

Query: 358 GGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPST 417
            GGL CNVIANAANWRLKPGGGGVNA+IF AAGP LE AT E+AK++ PGN+V+VPLPS+
Sbjct: 354 TGGLRCNVIANAANWRLKPGGGGVNASIFDAAGPELESATKEKAKTVSPGNAVVVPLPSS 413

Query: 418 SPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKL 477
           SPL  REGVTHVIHVLGPNMNP+RPNCL+ DY +GC++L+ AY SLFEGF SIVR+    
Sbjct: 414 SPLFTREGVTHVIHVLGPNMNPQRPNCLNNDYERGCKVLQDAYASLFEGFASIVRN---- 469

Query: 478 SKGCNEDIRLEPSVSQDHSEDVHGNYISTGDKIKRDGGHEYEQSKKCK-TQNEVGTDINL 536
           +   NE++  +    QD SE    N   T  K KRD  HE E+SKK K T +   T    
Sbjct: 470 TVHQNENLGKKSLELQDQSEQCSRN---TDQKSKRDADHELEKSKKYKGTHDGFDTTFTG 526

Query: 537 SRAANLSADNEKIGVSTSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKVH 596
           SR   + +++++   ST KAWGSWAQAL+  AM+PE+HKDDLLEIS+D+VVLND+YPK  
Sbjct: 527 SRDEKVDSEHKRTDGSTKKAWGSWAQALHLIAMHPEKHKDDLLEISEDIVVLNDMYPKAQ 586

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496191|ref|XP_003516953.1| PREDICTED: transcription factor bHLH140-like [Glycine max]

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/602 (61%), Positives = 443/602 (73%), Gaps = 45/602 (7%)

Query: 1   MDTDIDDTCKAKDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK 60
           MD D+++    K+     K +LVI+VGAPGSGKSTFCE VM SS RPW R+CQDTI  GK
Sbjct: 1   MDMDVEEASAPKER----KPVLVILVGAPGSGKSTFCEEVMGSSTRPWVRVCQDTIGNGK 56

Query: 61  SGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLG-GPEVDVHAVVLDLPAKLCI 119
           +G K QCL+SA+ ALK GKSVF+DRCNL+REQR++F+KLG GP++DVHAVVLDLPAKLCI
Sbjct: 57  AGNKAQCLSSATRALKDGKSVFIDRCNLDREQRSEFIKLGDGPQIDVHAVVLDLPAKLCI 116

Query: 120 SRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGL 179
           SRSVKR  HEGNLQGGKAAAVVNRMLQ KELPKLSEGFSRIT CQNE+DV+ AL+TYS L
Sbjct: 117 SRSVKRTGHEGNLQGGKAAAVVNRMLQHKELPKLSEGFSRITFCQNESDVKNALNTYSTL 176

Query: 180 GPLDTLPHGSFGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCL 239
           GPLD+L +G FGQKNPD+KIQ+GIMKFLK+ + P    S                     
Sbjct: 177 GPLDSLQYGCFGQKNPDSKIQVGIMKFLKRAEVPQTFSS--------------------- 215

Query: 240 EGQEITSLLSDAAGEEVKGTENPEVASVNQNG---SSSDVPTLAFPSLSTSDFQFNNEKA 296
                   + D    E K  EN  V SV  +    S  D+PTLAFPS+STSDFQFN+EKA
Sbjct: 216 --------IPDNDNSETKEVENQAVGSVGSHANQVSLDDIPTLAFPSISTSDFQFNHEKA 267

Query: 297 SDVIIEKVEEFVNKLGNARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLY 356
           +D+I+EKV EF NK  NARLVLVDL+  SKILSLV+AK A K+I+ +KFFT VGDIT LY
Sbjct: 268 ADIIVEKVAEFSNKFRNARLVLVDLSHKSKILSLVKAKIAGKNIDAQKFFTHVGDITHLY 327

Query: 357 TGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPS 416
           + GGL CNVIANAANWRL PGGGGVNAAIF+AAGP LE AT E+ +SL PGN+ +VPLPS
Sbjct: 328 SRGGLRCNVIANAANWRLNPGGGGVNAAIFNAAGPELESATKEKVQSLSPGNAAVVPLPS 387

Query: 417 TSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEK 476
           +SPL  REGVTHVIHV+GPNMNP+RPNCL+ DY KGC+IL+ AYTSLFEGF SIVR+Q  
Sbjct: 388 SSPLFTREGVTHVIHVVGPNMNPQRPNCLNNDYNKGCKILQDAYTSLFEGFASIVRNQTW 447

Query: 477 LSKGCNEDIR---LEPSVSQDHSEDVHGNYISTGDKIKRDGGHEYEQSKKCK-TQNEVGT 532
              G +E++    LE  V  D S +    +  T  K KRD  H   +SKK K T+++ G 
Sbjct: 448 HPVGKSENLERKSLELQVQSDCSRNY---FTKTDQKSKRDVDHGLGKSKKYKGTRDDSGL 504

Query: 533 DINLSRAANLSADNEKIGVSTSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLY 592
               SR  N+ +++ +   S +K WGSWAQAL++ AM+PE+ KDDLLEISDDVVVLND+Y
Sbjct: 505 TFTDSRNENVDSEH-RTERSMTKTWGSWAQALHQIAMHPEKLKDDLLEISDDVVVLNDMY 563

Query: 593 PK 594
           PK
Sbjct: 564 PK 565

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081123|emb|CBI18255.3| unnamed protein product [Vitis vinifera]

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/591 (60%), Positives = 431/591 (72%), Gaps = 83/591 (14%)

Query: 4   DIDDTCKAKDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT 63
           ++D    +K+ E + K I+V+++GAPGSGKSTFCEHV+RSS RPW R+CQDTI  GK+GT
Sbjct: 3   EMDCEPTSKEGEGQGKPIVVLLMGAPGSGKSTFCEHVIRSSTRPWVRVCQDTIGNGKAGT 62

Query: 64  KVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSV 123
           K QCL SA+SAL+ GKSVF+DRCNL+REQR +FVKLG P+V++HAVVLDLPA+LCISRSV
Sbjct: 63  KSQCLKSATSALEDGKSVFIDRCNLDREQRAEFVKLGSPQVEMHAVVLDLPAQLCISRSV 122

Query: 124 KRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLD 183
           KR  HEGNLQGGKAAAVVNRMLQKKELPKLSEGF RIT CQN++DVQ AL+TYS L  LD
Sbjct: 123 KRTGHEGNLQGGKAAAVVNRMLQKKELPKLSEGFHRITFCQNDSDVQTALNTYSALSHLD 182

Query: 184 TLPHGSFGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQE 243
           TLP G FGQKNPDAKIQL                                + + C + ++
Sbjct: 183 TLPPGCFGQKNPDAKIQLA-------------------------------KDSCCKQPED 211

Query: 244 ITSLLSDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEK 303
           I+S  S    +E+KG E+  V SV+   SS D+PTLAFPS+ST+DFQFN+EKA+D+I+EK
Sbjct: 212 ISS--SSGNAKEIKGGEDIVVHSVDGTVSSKDIPTLAFPSISTADFQFNHEKAADIILEK 269

Query: 304 VEEFVNKLGNARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCC 363
           VEEFVNK+ NARLVLVDL+ GSKILSLVRAKAAQ++I+  KFFTFVGDITRLY+ GGL C
Sbjct: 270 VEEFVNKVENARLVLVDLSHGSKILSLVRAKAAQRNIDSNKFFTFVGDITRLYSKGGLRC 329

Query: 364 NVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGR 423
           N IANAANWRLKPGGGG NAAIFSAAGP LEV T +RA SL PG +++VPLPSTSPL  R
Sbjct: 330 NAIANAANWRLKPGGGGANAAIFSAAGPELEVETKKRAGSLIPGKALVVPLPSTSPLFSR 389

Query: 424 EGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNE 483
           EGVTHVIHVLGPNMN +RPNCL+ DYVKG ++LR+AYTSLFEGF SI+ +Q  L +G +E
Sbjct: 390 EGVTHVIHVLGPNMNRQRPNCLNNDYVKGSKVLREAYTSLFEGFASIMNTQGNLLEGSSE 449

Query: 484 DIRLEPSVSQDHSEDVHGNYISTGDKIKRDGGHEYEQSKKCKTQNEVGTDINLSRAANLS 543
           ++R E                                               LSR   + 
Sbjct: 450 NLRSE-----------------------------------------------LSR---VG 459

Query: 544 ADNEKIGVSTSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPK 594
            +NEKIG + +K WGSWAQ+LY  AM+PE+HKD+L+EISDDVVVLNDLYPK
Sbjct: 460 LNNEKIGRNMTKTWGSWAQSLYHIAMHPEKHKDNLIEISDDVVVLNDLYPK 510

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440255|ref|XP_004137900.1| PREDICTED: transcription factor bHLH140-like [Cucumis sativus]

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/584 (61%), Positives = 424/584 (72%), Gaps = 47/584 (8%)

Query: 12  KDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSA 71
           K +E + K I+VI+VGAPGSGKSTFCE VM SS+RPW RICQDTI  GKSGT+ QCL +A
Sbjct: 8   KGKEGQGKLIMVILVGAPGSGKSTFCELVMGSSSRPWVRICQDTIGNGKSGTRAQCLKTA 67

Query: 72  SSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGN 131
           +SAL  GKSVF+DRCNLE EQR DFVKLGGP+VDVHAVVLDLPA+LCISRSVKR  HEGN
Sbjct: 68  TSALNDGKSVFVDRCNLEIEQRADFVKLGGPQVDVHAVVLDLPAQLCISRSVKRTGHEGN 127

Query: 132 LQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFG 191
           L GGKAAAVVN+MLQKKELPKL+EGF+RIT C NE+DV +A+D Y  L     LPHG FG
Sbjct: 128 LSGGKAAAVVNKMLQKKELPKLNEGFTRITFCHNESDVLSAIDMYKSLDLHTMLPHGCFG 187

Query: 192 QKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKN-SCLEGQEITSLLSD 250
           QKNPD K+QLGI KFLKK + PS T S+A++ ++   PQ T+EK  SC            
Sbjct: 188 QKNPDKKVQLGITKFLKKAEKPSKTCSSANTDKNSPTPQPTQEKRESC------------ 235

Query: 251 AAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNK 310
                                S SD PTLAFPS+STSDF+F++EKA+++I+EKVEEF++K
Sbjct: 236 ------------------DKISQSDPPTLAFPSISTSDFKFSHEKAAEIIVEKVEEFMDK 277

Query: 311 LGNARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAA 370
           LGNARLVLVDL+ GSKILS+V+AKA +K+I+  KFFTFVGDIT+L + GGL CNVIANAA
Sbjct: 278 LGNARLVLVDLSHGSKILSMVKAKATEKNISSTKFFTFVGDITKLNSEGGLRCNVIANAA 337

Query: 371 NWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVI 430
           NWRLKPGGGGVNAAIFSAAG  LEVAT ++A SL PGN+V V LPSTSPL  REGVTHVI
Sbjct: 338 NWRLKPGGGGVNAAIFSAAGSGLEVATKQQANSLQPGNAVAVQLPSTSPLLNREGVTHVI 397

Query: 431 HVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDIRLEPS 490
           HVLGPNMNP+RPN L+ DY +GC++L  AY+SLF+ F+SIV+ + K  KG +E +   P 
Sbjct: 398 HVLGPNMNPQRPNYLNNDYDEGCKLLGNAYSSLFQAFISIVQDKYKSVKGIHECLGSTPP 457

Query: 491 VSQDHSEDVHGNYISTGDKIKRDGGHEYEQSKKCKTQNEVGTDINLSRAANLSADNEKIG 550
             Q HSED H        K KR+     E+SKK K        +N          N    
Sbjct: 458 ELQKHSEDGH-------HKFKRENLQNLERSKKWKGSQNSTEGLN---------QNNNTV 501

Query: 551 VSTSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPK 594
              SK WGSWAQALY TAM+PERH + +LE SDDVVVL D+YPK
Sbjct: 502 PKKSKHWGSWAQALYDTAMHPERHTNSVLETSDDVVVLYDIYPK 545

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449483719|ref|XP_004156669.1| PREDICTED: transcription factor bHLH140-like [Cucumis sativus]

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/584 (61%), Positives = 424/584 (72%), Gaps = 47/584 (8%)

Query: 12  KDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSA 71
           K +E + K I+VI+VGAPGSGKSTFCE VM SS+RPW RICQDTI  GKSGT+ QCL +A
Sbjct: 8   KGKEGQGKLIMVILVGAPGSGKSTFCELVMGSSSRPWVRICQDTIGNGKSGTRAQCLKTA 67

Query: 72  SSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGN 131
           +SAL  GKSVF+DRCNLE EQR DFVKLGGP+VDVHAVVLDLPA+LCISRSVKR  HEGN
Sbjct: 68  TSALNDGKSVFVDRCNLEIEQRADFVKLGGPQVDVHAVVLDLPAQLCISRSVKRTGHEGN 127

Query: 132 LQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFG 191
           L GGKAAAVVN+MLQKKELPKL+EGF+RIT C NE+DV +A+D Y  L     LPHG FG
Sbjct: 128 LSGGKAAAVVNKMLQKKELPKLNEGFTRITFCHNESDVLSAIDMYKSLDLHTMLPHGCFG 187

Query: 192 QKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKN-SCLEGQEITSLLSD 250
           QKNPD K+QLGIMKFLKK + PS T S+A++ ++   PQ T+EK  SC            
Sbjct: 188 QKNPDKKVQLGIMKFLKKAEKPSKTCSSANTDKNSPTPQPTQEKRESC------------ 235

Query: 251 AAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNK 310
                                S SD PTLAFPS+STSDF+F++EKA+++I+ KVEEF++K
Sbjct: 236 ------------------DKISQSDPPTLAFPSISTSDFKFSHEKAAEIIVGKVEEFMDK 277

Query: 311 LGNARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAA 370
           LGNARLVLVDL+ GSKILS+V+AKA +K+I+  KFFTFVGDIT+L + GGL CNVIANAA
Sbjct: 278 LGNARLVLVDLSHGSKILSMVKAKATEKNISSTKFFTFVGDITKLNSEGGLRCNVIANAA 337

Query: 371 NWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVI 430
           NWRLKPGGGGVNAAIFSAAG  LEVAT ++A SL PGN+V V LPSTSPL  REGVTHVI
Sbjct: 338 NWRLKPGGGGVNAAIFSAAGSGLEVATKQQANSLQPGNAVAVQLPSTSPLLNREGVTHVI 397

Query: 431 HVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDIRLEPS 490
           HVLGPNMNP+RPN L+ DY +GC++L  AY+SLF+ F+SIV+ + K  KG +E +   P 
Sbjct: 398 HVLGPNMNPQRPNYLNNDYDEGCKLLGNAYSSLFQAFISIVQDKYKSVKGIHECLGSTPP 457

Query: 491 VSQDHSEDVHGNYISTGDKIKRDGGHEYEQSKKCKTQNEVGTDINLSRAANLSADNEKIG 550
             Q HSED H        K KR+     E+SKK K        +N          N    
Sbjct: 458 ELQKHSEDGH-------HKFKRENLQNLERSKKWKGSQNSTEGLN---------QNNNTV 501

Query: 551 VSTSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPK 594
              SK WGSWAQALY TAM+PERH + +LE SDDVVVL D+YPK
Sbjct: 502 PKKSKHWGSWAQALYDTAMHPERHTNSVLETSDDVVVLYDIYPK 545

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810265|ref|XP_002873016.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp. lyrata] gi|297318853|gb|EFH49275.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/597 (55%), Positives = 418/597 (70%), Gaps = 56/597 (9%)

Query: 2   DTDIDDTCKAKDEE-KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK 60
           D+D  +  + K EE +K KQI+V+++G PGS KSTFC+ VMRSS RPW+RICQD IN GK
Sbjct: 193 DSDHREKMEVKIEESEKAKQIVVLLIGPPGSCKSTFCDTVMRSSHRPWSRICQDIINNGK 252

Query: 61  SGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCIS 120
           +GTK QCL  A+ +L++GKSVF+DRCNL+REQR++F+KLGGP ++VHAVVL+L A++CIS
Sbjct: 253 AGTKAQCLKMATESLREGKSVFIDRCNLDREQRSEFIKLGGPGIEVHAVVLELSAQVCIS 312

Query: 121 RSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLG 180
           RSVKR  HEGNLQGG+AAAVVN+MLQ KELPK++EGFSRI  C N+ DV+ A +TY+ LG
Sbjct: 313 RSVKRTGHEGNLQGGRAAAVVNKMLQSKELPKVNEGFSRIMFCYNDADVENASNTYNKLG 372

Query: 181 PLDTLPHGSFGQKNPDAKIQLGIMKFLKKVDA--PSNTGSTASSTQDPVPPQITEEKNSC 238
           P+D LP G FG+K  D K Q GIMKF KKV+A   S++   A++TQ+             
Sbjct: 373 PMDNLPSGCFGEKKSDTKSQPGIMKFFKKVNALPGSSSNEAANATQN------------- 419

Query: 239 LEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASD 298
                           + + T N  V+   + GS+  VPTLAFPS+ST+DFQF+ EKASD
Sbjct: 420 ----------------DNEKTRNVRVSPA-KLGSADIVPTLAFPSISTADFQFDLEKASD 462

Query: 299 VIIEKVEEFVNKLGNARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTG 358
           +I+EK EEF+ KLG ARLVLVDL+QGSKILSLV+AKAAQK+I+  +FFTFVGDIT+L + 
Sbjct: 463 IIVEKAEEFLPKLGTARLVLVDLSQGSKILSLVKAKAAQKNIDSARFFTFVGDITKLRSE 522

Query: 359 GGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTS 418
           GGL CNVIANA NWRLKPGGGGVNAAIF AAGP LE AT  RA +L PG + +VPLPST 
Sbjct: 523 GGLHCNVIANATNWRLKPGGGGVNAAIFKAAGPDLEAATRVRANTLLPGKAAVVPLPSTC 582

Query: 419 PLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLS 478
           PL   EG+THVIHVLGPNMNP RP+ L+ DY KGC+ LR+AYTSLFEGFLS+V+ Q KL 
Sbjct: 583 PLHNAEGITHVIHVLGPNMNPNRPDNLNNDYTKGCKTLREAYTSLFEGFLSVVQDQSKLP 642

Query: 479 KGCNEDIRLEPSVSQDHSEDVHGNYISTGDKIKRDGGHEYEQSKKCKTQNEVGTDINLSR 538
           K  N+                      +G+ IK D     E++KK K   +     NL  
Sbjct: 643 KRSNQTA-----------------LSDSGEDIKEDS----ERNKKYKGSQDKAVTNNLES 681

Query: 539 AANLSADNEKIGVSTSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKV 595
            +    D    G   SK W +WA AL+  AM+PERH++ +LE SD++VV+ND YPK 
Sbjct: 682 GS--LEDTRDSGKKMSKGWSTWALALHSIAMHPERHENVVLEFSDNIVVINDQYPKA 736

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	636
TAIR|locus:2179122	912	APTX "APRATAXIN-like" [Arabido	0.389	0.271	0.648	5.8e-170
POMBASE|SPAC23C11.04c	408	pnk1 "DNA kinase/phosphatase P	0.215	0.335	0.292	8.8e-07
WB|WBGene00009010	407	F21D5.5 [Caenorhabditis elegan	0.212	0.331	0.290	6.5e-05
UNIPROTKB|E2R0U3	521	PNKP "Uncharacterized protein"	0.204	0.249	0.290	0.00056
DICTYBASE|DDB_G0281229	544	pnkp "putative bifunctional po	0.111	0.130	0.384	0.00059
UNIPROTKB|F1RHU1	522	PNKP "Uncharacterized protein"	0.204	0.249	0.276	0.00093

TAIR|locus:2179122 APTX "APRATAXIN-like" [Arabidopsis thaliana (taxid:3702)]

 Score = 799 (286.3 bits), Expect = 5.8e-170, Sum P(3) = 5.8e-170
 Identities = 164/253 (64%), Positives = 196/253 (77%)

Query:   259 TENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVL 318
             T N  V+ V   GS+  VPTLAFPS+ST+DFQF+ EKASD+I+EK EEF++KLG ARLVL
Sbjct:   439 TANVRVSPVKL-GSADIVPTLAFPSISTADFQFDLEKASDIIVEKAEEFLSKLGTARLVL 497

Query:   319 VDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGG 378
             VDL++GSKILSLV+AKA+QK+I+  KFFTFVGDIT+L + GGL CNVIANA NWRLKPGG
Sbjct:   498 VDLSRGSKILSLVKAKASQKNIDSAKFFTFVGDITKLRSEGGLHCNVIANATNWRLKPGG 557

Query:   379 GGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMN 438
             GGVNAAIF AAGP LE AT  RA +L PG +V+VPLPST PL   EG+THVIHVLGPNMN
Sbjct:   558 GGVNAAIFKAAGPDLETATRVRANTLLPGKAVVVPLPSTCPLHNAEGITHVIHVLGPNMN 617

Query:   439 PRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDIRLEPSVSQDHSED 498
             P RP+ L+ DY KGC+ LR+AYTSLFEGFLS+V+ Q KL K  ++   +  S  +D  ED
Sbjct:   618 PNRPDNLNNDYTKGCKTLREAYTSLFEGFLSVVQDQSKLPKRSSQTA-VSDS-GEDIKED 675

Query:   499 VHGN--YISTGDK 509
                N  Y  + DK
Sbjct:   676 SERNKKYKGSQDK 688

GO:0003824 "catalytic activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006790 "sulfur compound metabolic process" evidence=IDA

GO:0009150 "purine ribonucleotide metabolic process" evidence=IDA

GO:0047627 "adenylylsulfatase activity" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006259 "DNA metabolic process" evidence=RCA

GO:0006310 "DNA recombination" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007126 "meiosis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0010332 "response to gamma radiation" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0032204 "regulation of telomere maintenance" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0043247 "telomere maintenance in response to DNA damage" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

POMBASE|SPAC23C11.04c pnk1 "DNA kinase/phosphatase Pnk1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 145 (56.1 bits), Expect = 8.8e-07, P = 8.8e-07
 Identities = 43/147 (29%), Positives = 71/147 (48%)

Query:    15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSA 74
             +K   Q +V++VG P SGKST  E  + +    + R+ QD +      TK +C+ +A  A
Sbjct:   251 KKSEHQEIVVLVGFPSSGKSTLAESQIVTQG--YERVNQDILK-----TKSKCIKAAIEA 303

Query:    75 LKKGKSVFLDRCNLEREQRTDFVKLGGP-EVDVHAVVLDLPAKLCISRSVKRIEHEGNLQ 133
             LKK KSV +D  N   E R  ++ +    E+ +  + L    +L    +V R  H    Q
Sbjct:   304 LKKEKSVVIDNTNPTIESRKMWIDIAQEFEIPIRCIHLQSSEELARHNNVFRYIHHNQKQ 363

Query:   134 GGKAAAVVNRMLQKKELPKLSEGFSRI 160
               + A   N    + ++P + EGF+ +
Sbjct:   364 LPEIA--FNSFKSRFQMPTVEEGFTNV 388

GO:0000718 "nucleotide-excision repair, DNA damage removal" evidence=IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0046403 "polynucleotide 3'-phosphatase activity" evidence=IDA

GO:0046404 "ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity" evidence=IDA

WB|WBGene00009010 F21D5.5 [Caenorhabditis elegans (taxid:6239)]

 Score = 128 (50.1 bits), Expect = 6.5e-05, P = 6.5e-05
 Identities = 43/148 (29%), Positives = 78/148 (52%)

Query:    16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSAL 75
             K  ++ +++MVG PGSGKSTF +  M      +  + +DTI     GT  +C+ +  S L
Sbjct:   246 KSSEKEIILMVGFPGSGKSTFAK--MLGHQHDYKIVNRDTI-----GTWQKCVAATRSYL 298

Query:    76 KKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKL-CISRSVK-RIEHEGNLQ 133
               GKSV +D  + + E R  ++ +   E+ V     ++   +     +++ R+  + N  
Sbjct:   299 ADGKSVVIDNTSPDLESRKRYIDVA-KELGVPIRCFEMNCSMEHAQHNIRFRVLTDDN-- 355

Query:   134 GGKAAAVVNRMLQKKEL-PKLSEGFSRI 160
               + +++V R+ + K + P LSEGFS+I
Sbjct:   356 AAEISSMVLRIHKGKYVEPTLSEGFSQI 383

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0019915 "lipid storage" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0003690 "double-stranded DNA binding" evidence=IDA

UNIPROTKB|E2R0U3 PNKP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 121 (47.7 bits), Expect = 0.00056, P = 0.00056
 Identities = 41/141 (29%), Positives = 69/141 (48%)

Query:    22 LVIMVGAPGSGKSTFC-EHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKS 80
             +V+ VG PG+GKSTF  EH++ +    +  + +DT+     G+  +C+T+  +ALK+ K 
Sbjct:   367 VVVAVGFPGAGKSTFLQEHLVSAG---YVHVNRDTL-----GSWQRCVTTCENALKQRKR 418

Query:    81 VFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRI-EHEGNLQGGKAAA 139
             V +D  N +   R  ++K    +  V          L  +R   R  E  G+     +  
Sbjct:   419 VVIDNTNPDPPTRARYIKCAR-DAGVPCRCFLFSTTLEHARHNNRFREMTGSSHAPVSDV 477

Query:   140 VVNRMLQKKELPKLSEGFSRI 160
             V+    ++ E P L+EGFS I
Sbjct:   478 VMYGYRKQFEAPTLAEGFSAI 498

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0046404 "ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity" evidence=IEA

GO:0046403 "polynucleotide 3'-phosphatase activity" evidence=IEA

GO:0042769 "DNA damage response, detection of DNA damage" evidence=IEA

DICTYBASE|DDB_G0281229 pnkp "putative bifunctional polynucleotide phosphatase/kinase" [Dictyostelium discoideum (taxid:44689)]

 Score = 121 (47.7 bits), Expect = 0.00059, P = 0.00059
 Identities = 30/78 (38%), Positives = 45/78 (57%)

Query:    22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSV 81
             +VI VG P +GKSTF       +   +A I QDT+       K QCL +A++AL +GKSV
Sbjct:   386 MVISVGYPAAGKSTFARKYFGPAG--YAIINQDTLKD-----KAQCLKAANAALAQGKSV 438

Query:    82 FLDRCNLEREQRTDFVKL 99
              +D  N  ++ R +++ L
Sbjct:   439 IIDNTNPTKDVRAEYLAL 456

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=ISS

GO:0005958 "DNA-dependent protein kinase-DNA ligase 4 complex" evidence=ISS

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=ISS

GO:0046403 "polynucleotide 3'-phosphatase activity" evidence=ISS

GO:0042769 "DNA damage response, detection of DNA damage" evidence=ISS

GO:0019201 "nucleotide kinase activity" evidence=ISS

GO:0009314 "response to radiation" evidence=ISS

GO:0006979 "response to oxidative stress" evidence=ISS

GO:0006281 "DNA repair" evidence=ISS

GO:0006261 "DNA-dependent DNA replication" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0004519 "endonuclease activity" evidence=ISS

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|F1RHU1 PNKP "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 119 (46.9 bits), Expect = 0.00093, P = 0.00093
 Identities = 39/141 (27%), Positives = 70/141 (49%)

Query:    22 LVIMVGAPGSGKSTFC-EHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKS 80
             +V+ VG PG+GKSTF  EH++ +    +  + +DT+     G+  +C+T+  +ALK+ K 
Sbjct:   368 VVVAVGFPGAGKSTFLREHLVSAG---YVHVNRDTL-----GSWQRCVTTCEAALKQRKR 419

Query:    81 VFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAV 140
             V +D  N + + R  ++K    +  V        A L  +R   R     +      + +
Sbjct:   420 VVIDNTNPDLQSRARYIKCAR-DAGVPCRCFLFSASLEQARHNNRFREMTDPSHVPVSDI 478

Query:   141 VNRMLQKK-ELPKLSEGFSRI 160
             V    +K+ E P L+EGF+ +
Sbjct:   479 VIYGYRKQFEAPTLAEGFAAV 499


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.132   0.386    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      636       636   0.00092  120 3  11 23  0.45    34
                                                     36  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  618 (66 KB)
  Total size of DFA:  341 KB (2171 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  64.13u 0.14s 64.27t   Elapsed:  00:00:03
  Total cpu time:  64.13u 0.14s 64.27t   Elapsed:  00:00:03
  Start:  Thu May  9 22:34:19 2013   End:  Thu May  9 22:34:22 2013

GO:0046404 "ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity" evidence=IEA

GO:0046403 "polynucleotide 3'-phosphatase activity" evidence=IEA

GO:0042769 "DNA damage response, detection of DNA damage" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00001354001 SubName- Full=Chromosome chr8 scaffold_115, whole genome shotgun sequence; (738 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	636
pfam13671	143	pfam13671, AAA_33, AAA domain	1e-28
cd02908	165	cd02908, Macro_Appr_pase_like, Macro domain, Appr-	2e-11
TIGR01663	526	TIGR01663, PNK-3'Pase, polynucleotide 5'-kinase 3'	6e-10
smart00506	133	smart00506, A1pp, Appr-1"-p processing enzyme	2e-09
pfam01661	117	pfam01661, Macro, Macro domain	3e-09
COG2110	179	COG2110, COG2110, Predicted phosphatase homologous	4e-09
COG4639	168	COG4639, COG4639, Predicted kinase [General functi	8e-09
TIGR04075	851	TIGR04075, bacter_Pnkp, polynucleotide kinase-phos	3e-08
PRK00431	177	PRK00431, PRK00431, RNase III inhibitor; Provision	4e-08
cd02907	175	cd02907, Macro_Af1521_BAL_like, Macro domain, Af15	2e-07
cd02749	147	cd02749, Macro, Macro domain, a high-affinity ADP-	5e-07
cd02903	137	cd02903, Macro_BAL_like, Macro domain, BAL_like fa	2e-06

>gnl|CDD|222307 pfam13671, AAA_33, AAA domain

 Score =  110 bits (278), Expect = 1e-28
 Identities = 45/146 (30%), Positives = 65/146 (44%), Gaps = 19/146 (13%)

Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKV---------------Q 66
           L++MVG PGSGKSTF   ++R        +  DT+ K   G                  +
Sbjct: 1   LILMVGLPGSGKSTFARRLLR--ELGAVVLSSDTLRKRLRGDGPPDISYYARASGRVYQR 58

Query: 67  CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLG-GPEVDVHAVVLDLPAKLCISRSVKR 125
            L  A  AL+ G+ V +D  NL RE+R   + L       V  V L+ P ++   R+ +R
Sbjct: 59  LLELAREALRAGRPVIVDATNLSREERARLIDLARRYGAPVRIVYLEAPEEVLRERNAQR 118

Query: 126 IEHEGNLQGGKAAAVVNRMLQKKELP 151
            E  G        AV++RML + E P
Sbjct: 119 -ERSGGDPSDVPEAVLDRMLARFEPP 143

This family of domains contain only a P-loop motif, that is characteristic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif. Length = 143

>gnl|CDD|239236 cd02908, Macro_Appr_pase_like, Macro domain, Appr-1"-pase_like family

 Score = 62.1 bits (152), Expect = 2e-11
 Identities = 34/92 (36%), Positives = 41/92 (44%), Gaps = 21/92 (22%)

Query: 348 FVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPG 407
             GDIT+L        + I NAAN  L  GGGGV+ AI  AAGP L     E       G
Sbjct: 5   IQGDITKLE------VDAIVNAANSSLL-GGGGVDGAIHRAAGPELLEECRELRGCP-TG 56

Query: 408 NSVIVP---LPSTSPLCGREGVTHVIHVLGPN 436
            +VI     LP+           +VIH +GP 
Sbjct: 57  EAVITSGYNLPA----------KYVIHTVGPV 78

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate. Length = 165

>gnl|CDD|130724 TIGR01663, PNK-3'Pase, polynucleotide 5'-kinase 3'-phosphatase

 Score = 61.6 bits (149), Expect = 6e-10
 Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 9/140 (6%)

Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSV 81
           +VI VG PG+GKS FC+   +     +  +  DT+     G+   CLT+   AL +GK  
Sbjct: 371 MVIAVGFPGAGKSHFCKKFFQP--AGYKHVNADTL-----GSTQNCLTACERALDQGKRC 423

Query: 82  FLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141
            +D  N +   R  F++       +        A L  ++         +    K   +V
Sbjct: 424 AIDNTNPDAASRAKFLQCAR-AAGIPCRCFLFNAPLAQAKHNIAFRELSDSAHIKIKDMV 482

Query: 142 NRMLQKK-ELPKLSEGFSRI 160
              ++KK E P L+EGF  I
Sbjct: 483 FNGMKKKFEAPALAEGFIAI 502

This model represents the metazoan 5'-polynucleotide-kinase-3'-phosphatase, PNKP, which is believed to be involved in repair of oxidative DNA damage. Removal of 3' phosphates is essential for the further processing of the break by DNA polymerases. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is replaced by a conserved arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Very close relatives of this domain are also found separate from the N- and C-terminal domains seen here, as in the 3'-phosphatase found in plants. The larger family of these domains is described by TIGR01664. Outside of the phosphatase domain is a P-loop ATP-binding motif associated with the kinase activity. The entry for the mouse homolog, GP|7108591, appears to be missing a large piece of sequence corresponding to the first conserved catalytic motif of the phosphatase domain as well as the conserved threonine of the second motif. Either this is a sequencing artifact or this may represent a pseudo- or non-functional gene. Note that the EC number for the kinase function is: 2.7.1.78. Length = 526

>gnl|CDD|214701 smart00506, A1pp, Appr-1"-p processing enzyme

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 34/125 (27%), Positives = 43/125 (34%), Gaps = 26/125 (20%)

Query: 344 KFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVA--TAERA 401
                 GDIT+         + I NAAN      GGGV  AI  AAG AL          
Sbjct: 1   ILKVVKGDITKPR------ADAIVNAANSDGAH-GGGVAGAIARAAGKALSKEEVRKLAG 53

Query: 402 KSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGC-EILRKAY 460
                G +V+          G     +VIH +GP             + K   E+L  AY
Sbjct: 54  GECPVGTAVVTE-------GGNLPAKYVIHAVGPR---------ASGHSKEGFELLENAY 97

Query: 461 TSLFE 465
            +  E
Sbjct: 98  RNCLE 102

Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji). Length = 133

>gnl|CDD|216634 pfam01661, Macro, Macro domain

 Score = 54.5 bits (132), Expect = 3e-09
 Identities = 34/101 (33%), Positives = 42/101 (41%), Gaps = 17/101 (16%)

Query: 367 ANAANWRLKPGGGGVNAAIFSAAGPALEVATAE--RAKSLYPGNSVIVPLPSTSPLCGRE 424
            NAAN  L  GGGGV  AI  AAGPAL     E  +      G +V+ P        G  
Sbjct: 1   VNAANSSLL-GGGGVAGAIHRAAGPALLEECRELKKQGGCPTGEAVVTP-------GGNL 52

Query: 425 GVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFE 465
              +VIH +GP           G   +  E+L  AY +  E
Sbjct: 53  PAKYVIHAVGPIWR-------HGGGEEEEELLASAYRNALE 86

This domain is an ADP-ribose binding module. It is found in a number of otherwise unrelated proteins. It is found at the C-terminus of the macro-H2A histone protein. This domain is found in the non-structural proteins of several types of ssRNA viruses such as NSP3 from alphaviruses. This domain is also found on its own in a family of proteins from bacteria, archaebacteria, and eukaryotes. Length = 117

>gnl|CDD|225021 COG2110, COG2110, Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only]

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 36/86 (41%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNS 409
           GDIT+L        + I NAAN +L  GGGGV  AI  AAGP LE   AE A     G  
Sbjct: 10  GDITKLE------ADAIVNAANSQLL-GGGGVAGAIHRAAGPQLEEECAEIAPKRGGGRI 62

Query: 410 VIVPLPSTSPLCGREGVTHVIHVLGP 435
            +     T    GR    +VIH +GP
Sbjct: 63  PVGEAVITEA--GRLPAKYVIHTVGP 86

Length = 179

>gnl|CDD|226986 COG4639, COG4639, Predicted kinase [General function prediction only]

 Score = 54.8 bits (132), Expect = 8e-09
 Identities = 38/147 (25%), Positives = 59/147 (40%), Gaps = 17/147 (11%)

Query: 21  ILVIMVGAPGSGKSTFCE------HVMRSSA--RPWARICQDTINKGKSGTKVQCL-TSA 71
           ILV++ GA GSGKSTF +      +V+                 ++         L    
Sbjct: 3   ILVVLRGASGSGKSTFAKENFLQNYVLSLDDLRLLLGVSASKENSQKNDELVWDILYKQL 62

Query: 72  SSALKKGKSVFLDRCNLEREQRTDFVKLGGP-EVDVHAVVLDLPAKLCISRSVKRIEHEG 130
              L++GK   +D  NL RE R   + L       ++A+V D P +LC++R+  R     
Sbjct: 63  EQRLRRGKFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLRERQ-- 120

Query: 131 NLQGGKAAAVVNRMLQKKELPKLSEGF 157
                    V+ RML++       E F
Sbjct: 121 -----VPEEVIPRMLRETIDLLEKEPF 142

Length = 168

>gnl|CDD|234457 TIGR04075, bacter_Pnkp, polynucleotide kinase-phosphatase

 Score = 56.5 bits (137), Expect = 3e-08
 Identities = 52/162 (32%), Positives = 75/162 (46%), Gaps = 18/162 (11%)

Query: 22  LVIMVGAPGSGKSTFC-EHVMR----SSARPWARICQDTINKGKSGTKVQCL-TSASSAL 75
           LV++VGA GSGKSTF  +H       SS      +  D  ++  S      L   A   L
Sbjct: 10  LVVLVGASGSGKSTFARKHFKPTEVLSSDFCRGLVSDDENDQSASSDAFDVLYYIAGKRL 69

Query: 76  KKGKSVFLDRCNLEREQRTDFVKLGGPEVDVH--AVVLDLPAKLCISRSVKRIEHEGNLQ 133
            +G    +D  N++ E R   V L   E  V   A+VLDLP K+C+ R+  R     +  
Sbjct: 70  ARGLLTVIDATNVQPEDRKGLVALA-REYHVLPVAIVLDLPEKVCLERNAAR----PDRD 124

Query: 134 GGKAAAVVNRMLQ--KKELPKLS-EGFSRITLCQNENDVQAA 172
            G    VV R  Q  ++ L  L  EGF ++ + ++  +V AA
Sbjct: 125 FG--PHVVRRQHQELRRSLKGLKREGFRKVHVLRSPEEVDAA 164

Members of this protein family are the bacterial polynucleotide kinase-phosphatase (Pnkp) whose genes occur paired with genes for the 3' terminal RNA ribose 2'-O-methyltransferase Hen1. All members of the seed alignment belong to a cassette with the Hen1. The pair acts in bacterial RNA repair. This enzyme performs end-healing reactions on broken RNA, preparing from the RNA ligase to close the break. The working hypothesis is that the combination of Pnkp (RNA repair) and Hen1 (RNA modification) serves to first repair RNA damage from ribotoxins and then perform a modification that prevents the damage from recurring [Transcription, RNA processing]. Length = 851

>gnl|CDD|234759 PRK00431, PRK00431, RNase III inhibitor; Provisional

 Score = 52.9 bits (128), Expect = 4e-08
 Identities = 42/114 (36%), Positives = 49/114 (42%), Gaps = 25/114 (21%)

Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPA-LEVATAERAK--SLYP 406
           GDIT L        + I NAAN  L  GGGGV+ AI  AAGP  LE     R +      
Sbjct: 10  GDITELE------VDAIVNAANSSLL-GGGGVDGAIHRAAGPEILEECRELRQQQGPCPT 62

Query: 407 GNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAY 460
           G +VI     TS   GR    +VIH +GP    R             E+L  AY
Sbjct: 63  GEAVI-----TSA--GRLPAKYVIHTVGPVW--RGGED------NEAELLASAY 101

Length = 177

>gnl|CDD|239235 cd02907, Macro_Af1521_BAL_like, Macro domain, Af1521- and BAL-like family

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 36/114 (31%), Positives = 48/114 (42%), Gaps = 26/114 (22%)

Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAE---RAKSLYP 406
           GDITR         + I NAAN  LK  GGG+  AI  A GP ++  + E   +   +  
Sbjct: 9   GDITRFPV------DAIVNAANEDLK-HGGGLALAIVKAGGPEIQEESDEYVRKNGPVPT 61

Query: 407 GNSVIVPLPSTSPLCGREGVTHVIHVLGP-NMNPRRPNCLDGDYVKGCEILRKA 459
           G  V+     TS   G+    +VIH +GP         C         E L+KA
Sbjct: 62  GEVVV-----TSA--GKLPCKYVIHAVGPRWSGGEAEEC--------VEKLKKA 100

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains of BAL (B-aggressive lymphoma) proteins which contain multiple macro domains. Most BAL proteins also contain a C-terminal PARP active site and are also named as PARPs. Human BAL1 (or PARP-9) was originally identified as a risk-related gene in diffuse large B-cell lymphoma that promotes malignant B-cell migration. Some BAL family proteins exhibit PARP activity. Poly (ADP-ribosyl)ation is an immediate DNA-damage-dependent post-translational modification of histones and other nuclear proteins. BAL proteins may also function as transcription repressors. Length = 175

>gnl|CDD|239150 cd02749, Macro, Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases)

 Score = 49.3 bits (118), Expect = 5e-07
 Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 21/117 (17%)

Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLY--PG 407
           GDIT+         + I NAAN   +  GGGVN AI   AG  LE  + +  K L    G
Sbjct: 7   GDITKPLG-----SDAIVNAANSSGR-DGGGVNLAISKKAGKELEEESKKLRKELELQVG 60

Query: 408 NSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLF 464
            +V+            +G  ++IH++GP  N        G+     E+L+ AY +  
Sbjct: 61  EAVLT------KGYNLDGAKYLIHIVGPKYN-------QGNNKAAFELLKNAYENCL 104

Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Length = 147

>gnl|CDD|239231 cd02903, Macro_BAL_like, Macro domain, BAL_like family

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 37/116 (31%), Positives = 48/116 (41%), Gaps = 16/116 (13%)

Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNS 409
           GDI    T      +VI N+ N  L    GGV+ AI   AGP L+    +       G S
Sbjct: 8   GDIEDETT------DVIVNSVNPDLFLLKGGVSKAILRKAGPELQKELDKAKLGQTVG-S 60

Query: 410 VIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGC--EILRKAYTSL 463
           VIV    T    G     +V HV+ PN +      L  D V  C  +    +YTS+
Sbjct: 61  VIV----TKG--GNLPCKYVYHVVLPNWSNGALKIL-KDIVSECLEKCEELSYTSI 109

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-terminal PARP active site and are also named as PARPs. Human BAL1 (or PARP-9) was originally identified as a risk-related gene in diffuse large B-cell lymphoma that promotes malignant B-cell migration. Some BAL family proteins exhibit PARP activity. Poly (ADP-ribosyl)ation is an immediate DNA-damage-dependent post-translational modification of histones and other nuclear proteins. BAL proteins may also function as transcription repressors. Length = 137

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	636
cd02904	186	Macro_H2A_like Macro domain, Macro_H2A_like family	99.96
cd02905	140	Macro_GDAP2_like Macro domain, GDAP2_like family.	99.96
PRK04143	264	hypothetical protein; Provisional	99.94
cd02906	147	Macro_1 Macro domain, Unknown family 1. The macro	99.94
cd02908	165	Macro_Appr_pase_like Macro domain, Appr-1"-pase_li	99.92
cd02907	175	Macro_Af1521_BAL_like Macro domain, Af1521- and BA	99.92
PRK00431	177	RNase III inhibitor; Provisional	99.92
cd02903	137	Macro_BAL_like Macro domain, BAL_like family. The	99.91
COG2110	179	Predicted phosphatase homologous to the C-terminal	99.9
cd03330	133	Macro_2 Macro domain, Unknown family 2. The macro	99.88
PRK04143	264	hypothetical protein; Provisional	99.79
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	99.79
smart00506	133	A1pp Appr-1"-p processing enzyme. Function determi	99.78
cd02749	147	Macro Macro domain, a high-affinity ADP-ribose bin	99.76
cd02900	186	Macro_Appr_pase Macro domain, Appr-1"-pase family.	99.76
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	99.74
COG4639	168	Predicted kinase [General function prediction only	99.7
PF01661	118	Macro: Macro domain; InterPro: IPR002589 The Macro	99.69
PHA02530	300	pseT polynucleotide kinase; Provisional	99.67
KOG2633	200	consensus Hismacro and SEC14 domain-containing pro	99.67
PRK13341	725	recombination factor protein RarA/unknown domain f	99.66
PRK06762	166	hypothetical protein; Provisional	99.62
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	99.59
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	99.58
cd02904	186	Macro_H2A_like Macro domain, Macro_H2A_like family	99.57
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	99.57
PRK14527	191	adenylate kinase; Provisional	99.5
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	99.49
PLN02674	244	adenylate kinase	99.48
PRK14531	183	adenylate kinase; Provisional	99.48
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	99.45
cd02901	140	Macro_Poa1p_like Macro domain, Poa1p_like family.	99.45
KOG3079	195	consensus Uridylate kinase/adenylate kinase [Nucle	99.43
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	99.43
PRK14532	188	adenylate kinase; Provisional	99.43
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	99.38
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	99.37
cd02905	140	Macro_GDAP2_like Macro domain, GDAP2_like family.	99.36
PRK14530	215	adenylate kinase; Provisional	99.36
COG0645	170	Predicted kinase [General function prediction only	99.34
PRK00279	215	adk adenylate kinase; Reviewed	99.34
PLN02459	261	probable adenylate kinase	99.32
PRK14528	186	adenylate kinase; Provisional	99.31
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	99.29
PRK14529	223	adenylate kinase; Provisional	99.29
PLN02200	234	adenylate kinase family protein	99.27
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	99.27
PRK13808	333	adenylate kinase; Provisional	99.27
PRK02496	184	adk adenylate kinase; Provisional	99.26
KOG3354	191	consensus Gluconate kinase [Carbohydrate transport	99.26
cd02906	147	Macro_1 Macro domain, Unknown family 1. The macro	99.26
PRK14526	211	adenylate kinase; Provisional	99.25
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	99.23
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	99.22
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	99.21
PTZ00088	229	adenylate kinase 1; Provisional	99.21
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	99.21
cd02908	165	Macro_Appr_pase_like Macro domain, Appr-1"-pase_li	99.18
PRK09825	176	idnK D-gluconate kinase; Provisional	99.16
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	99.16
PRK11545	163	gntK gluconate kinase 1; Provisional	99.16
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	99.15
KOG2134	422	consensus Polynucleotide kinase 3' phosphatase [Re	99.12
PRK06217	183	hypothetical protein; Validated	99.11
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	99.09
KOG3078	235	consensus Adenylate kinase [Nucleotide transport a	99.07
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	99.06
cd02903	137	Macro_BAL_like Macro domain, BAL_like family. The	99.06
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	99.05
cd02907	175	Macro_Af1521_BAL_like Macro domain, Af1521- and BA	99.05
COG2110	179	Predicted phosphatase homologous to the C-terminal	99.04
PRK08118	167	topology modulation protein; Reviewed	99.04
PRK13948	182	shikimate kinase; Provisional	99.02
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	99.01
PRK07261	171	topology modulation protein; Provisional	99.01
PRK13946	184	shikimate kinase; Provisional	99.0
KOG3062	281	consensus RNA polymerase II elongator associated p	98.99
PLN02842	505	nucleotide kinase	98.98
PRK00431	177	RNase III inhibitor; Provisional	98.97
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.97
PRK05057	172	aroK shikimate kinase I; Reviewed	98.97
KOG0562	184	consensus Predicted hydrolase (HIT family) [Genera	98.96
PRK00131	175	aroK shikimate kinase; Reviewed	98.95
PRK00625	173	shikimate kinase; Provisional	98.95
KOG2134	422	consensus Polynucleotide kinase 3' phosphatase [Re	98.94
PRK13947	171	shikimate kinase; Provisional	98.93
PRK03846	198	adenylylsulfate kinase; Provisional	98.92
PRK13949	169	shikimate kinase; Provisional	98.91
KOG2633	200	consensus Hismacro and SEC14 domain-containing pro	98.89
PRK14737	186	gmk guanylate kinase; Provisional	98.87
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	98.87
PRK01184	184	hypothetical protein; Provisional	98.87
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	98.85
PRK00889	175	adenylylsulfate kinase; Provisional	98.84
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	98.84
PRK06547	172	hypothetical protein; Provisional	98.83
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	98.83
PF01591	222	6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR0130	98.83
PRK05541	176	adenylylsulfate kinase; Provisional	98.83
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.82
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	98.82
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	98.8
PRK03839	180	putative kinase; Provisional	98.79
PHA02595	154	tk.4 hypothetical protein; Provisional	98.73
KOG4622	291	consensus Predicted nucleotide kinase [General fun	98.72
PRK03731	171	aroL shikimate kinase II; Reviewed	98.7
PRK08356	195	hypothetical protein; Provisional	98.7
PRK06696	223	uridine kinase; Validated	98.68
PRK12339	197	2-phosphoglycerate kinase; Provisional	98.68
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.68
PRK14738	206	gmk guanylate kinase; Provisional	98.65
PRK05480	209	uridine/cytidine kinase; Provisional	98.63
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.63
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	98.6
COG4185	187	Uncharacterized protein conserved in bacteria [Fun	98.6
cd03330	133	Macro_2 Macro domain, Unknown family 2. The macro	98.6
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	98.59
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	98.59
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	98.58
PRK00300	205	gmk guanylate kinase; Provisional	98.57
PRK08233	182	hypothetical protein; Provisional	98.56
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	98.55
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	98.55
PTZ00301	210	uridine kinase; Provisional	98.54
PRK04182	180	cytidylate kinase; Provisional	98.53
PRK12338	319	hypothetical protein; Provisional	98.52
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	98.52
PRK04040	188	adenylate kinase; Provisional	98.52
PRK13975	196	thymidylate kinase; Provisional	98.52
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	98.51
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	98.5
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	98.47
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	98.46
PRK13973	213	thymidylate kinase; Provisional	98.46
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	98.45
PLN02199	303	shikimate kinase	98.44
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	98.44
PRK00698	205	tmk thymidylate kinase; Validated	98.43
PRK04220	301	2-phosphoglycerate kinase; Provisional	98.39
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	98.38
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	98.37
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.37
PRK07667	193	uridine kinase; Provisional	98.37
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	98.35
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	98.33
PRK14730	195	coaE dephospho-CoA kinase; Provisional	98.33
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	98.32
PLN02924	220	thymidylate kinase	98.32
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	98.31
cd02900	186	Macro_Appr_pase Macro domain, Appr-1"-pase family.	98.31
PRK12337	475	2-phosphoglycerate kinase; Provisional	98.29
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	98.28
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	98.28
PF11969	116	DcpS_C: Scavenger mRNA decapping enzyme C-term bin	98.26
PRK13341	725	recombination factor protein RarA/unknown domain f	98.25
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	98.2
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	98.18
PLN02348	395	phosphoribulokinase	98.16
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	98.14
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.13
PRK14733	204	coaE dephospho-CoA kinase; Provisional	98.13
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	98.12
PRK14731	208	coaE dephospho-CoA kinase; Provisional	98.12
KOG0635	207	consensus Adenosine 5'-phosphosulfate kinase [Inor	98.11
PRK14732	196	coaE dephospho-CoA kinase; Provisional	98.09
PF01661	118	Macro: Macro domain; InterPro: IPR002589 The Macro	98.08
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.04
PLN02422	232	dephospho-CoA kinase	98.01
PRK07429	327	phosphoribulokinase; Provisional	98.01
PRK05439	311	pantothenate kinase; Provisional	98.0
PRK14734	200	coaE dephospho-CoA kinase; Provisional	98.0
COG3709	192	Uncharacterized component of phosphonate metabolis	97.95
PTZ00451	244	dephospho-CoA kinase; Provisional	97.94
PLN02772	398	guanylate kinase	97.93
PRK06761	282	hypothetical protein; Provisional	97.93
PF00004	132	AAA: ATPase family associated with various cellula	97.89
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	97.89
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	97.89
PRK07933	213	thymidylate kinase; Validated	97.88
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	97.87
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	97.87
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	97.85
PRK13974	212	thymidylate kinase; Provisional	97.82
cd02749	147	Macro Macro domain, a high-affinity ADP-ribose bin	97.81
PLN02318	656	phosphoribulokinase/uridine kinase	97.8
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	97.77
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.74
PRK15453	290	phosphoribulokinase; Provisional	97.73
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	97.7
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	97.68
smart00506	133	A1pp Appr-1"-p processing enzyme. Function determi	97.67
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	97.64
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.64
PLN02165	334	adenylate isopentenyltransferase	97.64
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	97.63
KOG3308	225	consensus Uncharacterized protein of the uridine k	97.63
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	97.6
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	97.6
KOG3877	393	consensus NADH:ubiquinone oxidoreductase, NDUFA10/	97.5
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	97.49
PRK13976	209	thymidylate kinase; Provisional	97.48
COG3896	205	Chloramphenicol 3-O-phosphotransferase [Defense me	97.48
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	97.47
PHA00729	226	NTP-binding motif containing protein	97.45
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	97.35
PRK09087	226	hypothetical protein; Validated	97.34
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	97.32
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	97.3
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	97.26
PF14519	280	Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJ	97.25
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	97.24
smart00382	148	AAA ATPases associated with a variety of cellular	97.22
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.21
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	97.15
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	97.14
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.13
KOG0738	491	consensus AAA+-type ATPase [Posttranslational modi	97.12
KOG1969	877	consensus DNA replication checkpoint protein CHL12	97.09
PRK08084	235	DNA replication initiation factor; Provisional	97.09
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	97.08
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	97.08
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	97.04
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	97.03
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	97.0
CHL00195	489	ycf46 Ycf46; Provisional	97.0
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	96.99
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	96.97
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	96.97
PRK00771	437	signal recognition particle protein Srp54; Provisi	96.97
cd03115	173	SRP The signal recognition particle (SRP) mediates	96.94
COG5324	758	Uncharacterized conserved protein [Function unknow	96.93
PRK03992	389	proteasome-activating nucleotidase; Provisional	96.93
PRK10867	433	signal recognition particle protein; Provisional	96.92
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	96.89
PRK06620	214	hypothetical protein; Validated	96.88
PF13173	128	AAA_14: AAA domain	96.85
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	96.85
cd02901	140	Macro_Poa1p_like Macro domain, Poa1p_like family.	96.84
PHA02544	316	44 clamp loader, small subunit; Provisional	96.84
COG2256	436	MGS1 ATPase related to the helicase subunit of the	96.83
KOG1384	348	consensus tRNA delta(2)-isopentenylpyrophosphate t	96.82
PRK14974	336	cell division protein FtsY; Provisional	96.79
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	96.78
PLN02748	468	tRNA dimethylallyltransferase	96.77
TIGR00064	272	ftsY signal recognition particle-docking protein F	96.76
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	96.75
TIGR00959	428	ffh signal recognition particle protein. This mode	96.75
PHA03132	580	thymidine kinase; Provisional	96.74
PRK10416	318	signal recognition particle-docking protein FtsY;	96.74
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	96.73
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	96.72
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	96.71
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	96.7
CHL00181	287	cbbX CbbX; Provisional	96.69
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	96.68
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.66
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	96.64
KOG0780	483	consensus Signal recognition particle, subunit Srp	96.62
KOG4238	627	consensus Bifunctional ATP sulfurylase/adenosine 5	96.61
PLN02840	421	tRNA dimethylallyltransferase	96.61
PRK04195	482	replication factor C large subunit; Provisional	96.56
PRK12377	248	putative replication protein; Provisional	96.55
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	96.54
PHA02244	383	ATPase-like protein	96.54
KOG3220	225	consensus Similar to bacterial dephospho-CoA kinas	96.53
cd03331	152	Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like fam	96.52
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	96.5
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	96.48
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	96.48
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	96.46
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	96.45
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	96.44
PRK06893	229	DNA replication initiation factor; Validated	96.44
PRK13342	413	recombination factor protein RarA; Reviewed	96.44
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	96.44
PRK00023	225	cmk cytidylate kinase; Provisional	96.42
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	96.41
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	96.41
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	96.36
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	96.36
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	96.36
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	96.34
PRK08116	268	hypothetical protein; Validated	96.34
KOG2702	323	consensus Predicted panthothenate kinase/uridine k	96.3
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	96.3
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	96.26
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	96.26
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	96.23
PRK08727	233	hypothetical protein; Validated	96.22
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	96.21
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	96.17
KOG0234	438	consensus Fructose-6-phosphate 2-kinase/fructose-2	96.16
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	96.11
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	96.06
PRK05642	234	DNA replication initiation factor; Validated	96.03
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	96.01
CHL00176	638	ftsH cell division protein; Validated	96.0
PLN03025	319	replication factor C subunit; Provisional	95.98
COG1660	286	Predicted P-loop-containing kinase [General functi	95.97
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	95.97
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	95.95
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	95.94
PRK07952	244	DNA replication protein DnaC; Validated	95.93
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	95.91
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	95.88
KOG0707	231	consensus Guanylate kinase [Nucleotide transport a	95.88
PRK06921	266	hypothetical protein; Provisional	95.86
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	95.86
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	95.85
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	95.84
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	95.83
KOG4359	166	consensus Protein kinase C inhibitor-like protein	95.79
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	95.76
PRK12402	337	replication factor C small subunit 2; Reviewed	95.76
COG2884	223	FtsE Predicted ATPase involved in cell division [C	95.76
KOG1533	290	consensus Predicted GTPase [General function predi	95.76
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	95.74
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	95.73
PRK12422	445	chromosomal replication initiation protein; Provis	95.73
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	95.72
PRK04296	190	thymidine kinase; Provisional	95.71
KOG0737	386	consensus AAA+-type ATPase [Posttranslational modi	95.71
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	95.71
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	95.64
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	95.63
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	95.62
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	95.62
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	95.62
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	95.6
PRK00149	450	dnaA chromosomal replication initiation protein; R	95.59
PF05729	166	NACHT: NACHT domain	95.59
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	95.59
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	95.58
PLN02796	347	D-glycerate 3-kinase	95.57
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	95.55
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	95.55
PRK09183	259	transposase/IS protein; Provisional	95.54
PLN03046	460	D-glycerate 3-kinase; Provisional	95.51
PRK08099	399	bifunctional DNA-binding transcriptional repressor	95.51
PRK09169	2316	hypothetical protein; Validated	95.49
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	95.49
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	95.47
KOG0651	388	consensus 26S proteasome regulatory complex, ATPas	95.45
PRK08181	269	transposase; Validated	95.44
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	95.43
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	95.43
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	95.41
PRK06835	329	DNA replication protein DnaC; Validated	95.36
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	95.34
PF07726	131	AAA_3: ATPase family associated with various cellu	95.34
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	95.32
PRK00440	319	rfc replication factor C small subunit; Reviewed	95.3
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	95.28
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	95.26
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	95.25
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	95.24
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	95.24
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	95.24
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	95.23
PF13245	76	AAA_19: Part of AAA domain	95.22
PRK06526	254	transposase; Provisional	95.22
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	95.2
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	95.19
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	95.18
PRK14086	617	dnaA chromosomal replication initiation protein; P	95.16
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	95.15
PRK14088	440	dnaA chromosomal replication initiation protein; P	95.1
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	95.1
PRK13768	253	GTPase; Provisional	95.09
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	95.08
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	95.05
PRK08903	227	DnaA regulatory inactivator Hda; Validated	95.05
cd00983	325	recA RecA is a bacterial enzyme which has roles in	95.03
cd01278	104	aprataxin_related aprataxin related: Aprataxin, a	95.02
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	95.02
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	95.02
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	95.01
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	95.01
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	94.98
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	94.98
PRK12269	863	bifunctional cytidylate kinase/ribosomal protein S	94.96
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	94.93
KOG0727	408	consensus 26S proteasome regulatory complex, ATPas	94.92
COG1855	604	ATPase (PilT family) [General function prediction	94.92
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	94.92
PRK09435	332	membrane ATPase/protein kinase; Provisional	94.89
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	94.89
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	94.86
cd03216	163	ABC_Carb_Monos_I This family represents the domain	94.85
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	94.83
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	94.82
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	94.82
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	94.81
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	94.81
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	94.8
KOG0741	744	consensus AAA+-type ATPase [Posttranslational modi	94.78
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	94.76
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	94.76
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	94.75
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	94.74
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	94.7
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	94.63
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	94.63
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	94.58
PRK08939	306	primosomal protein DnaI; Reviewed	94.52
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	94.52
TIGR03707	230	PPK2_P_aer polyphosphate kinase 2, PA0141 family.	94.51
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	94.51
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	94.49
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	94.46
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	94.45
COG1484	254	DnaC DNA replication protein [DNA replication, rec	94.43
KOG0989	346	consensus Replication factor C, subunit RFC4 [Repl	94.4
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	94.4
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	94.4
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	94.37
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	94.36
PRK05564	313	DNA polymerase III subunit delta'; Validated	94.35
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	94.35
PRK15455	644	PrkA family serine protein kinase; Provisional	94.34
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	94.34
TIGR00101	199	ureG urease accessory protein UreG. This model rep	94.33
PF01230	98	HIT: HIT domain; InterPro: IPR001310 The Histidine	94.32
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	94.31
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	94.28
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	94.25
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	94.25
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	94.23
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	94.23
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	94.22
PTZ00202	550	tuzin; Provisional	94.21
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	94.18
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	94.14
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	94.14
PRK05707	328	DNA polymerase III subunit delta'; Validated	94.14
COG4240	300	Predicted kinase [General function prediction only	94.14
CHL00206	2281	ycf2 Ycf2; Provisional	94.11
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	94.11
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	94.1
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	94.1
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	94.09
PRK08533	230	flagellar accessory protein FlaH; Reviewed	94.05
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	94.04
KOG0741	744	consensus AAA+-type ATPase [Posttranslational modi	94.03
PF00005	137	ABC_tran: ABC transporter This structure is on hol	94.01
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	93.98
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	93.98
PRK00089	292	era GTPase Era; Reviewed	93.94
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	93.93
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	93.93
TIGR03709	264	PPK2_rel_1 polyphosphate:nucleotide phosphotransfe	93.93
PF13479	213	AAA_24: AAA domain	93.92
TIGR02237	209	recomb_radB DNA repair and recombination protein R	93.88
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	93.87
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	93.87
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	93.86
PRK04328	249	hypothetical protein; Provisional	93.81
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	93.8
cd01394	218	radB RadB. The archaeal protein radB shares simila	93.8
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	93.78
COG0714	329	MoxR-like ATPases [General function prediction onl	93.78
PF03796	259	DnaB_C: DnaB-like helicase C terminal domain; Inte	93.77
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	93.76
PF01443	234	Viral_helicase1: Viral (Superfamily 1) RNA helicas	93.75
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	93.7
PF13189	179	Cytidylate_kin2: Cytidylate kinase-like family; PD	93.69
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	93.68
CHL00095	821	clpC Clp protease ATP binding subunit	93.67
PRK00411	394	cdc6 cell division control protein 6; Reviewed	93.63
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	93.59
KOG1534	273	consensus Putative transcription factor FET5 [Tran	93.56
KOG2028	554	consensus ATPase related to the helicase subunit o	93.52
cd03114	148	ArgK-like The function of this protein family is u	93.51
TIGR03708	493	poly_P_AMP_trns polyphosphate:AMP phosphotransfera	93.49
KOG4235	244	consensus Mitochondrial thymidine kinase 2/deoxygu	93.49
cd03116	159	MobB Molybdenum is an essential trace element in t	93.46
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	93.46
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	93.41
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	93.41
PRK14087	450	dnaA chromosomal replication initiation protein; P	93.4
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	93.4
PF08298	358	AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi	93.4
COG3911	183	Predicted ATPase [General function prediction only	93.39
PRK13764	602	ATPase; Provisional	93.39
PRK10865	857	protein disaggregation chaperone; Provisional	93.37
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	93.37
PRK09354	349	recA recombinase A; Provisional	93.35
PHA02624	647	large T antigen; Provisional	93.28
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	93.27
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	93.26
KOG0743	457	consensus AAA+-type ATPase [Posttranslational modi	93.26
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	93.23
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	93.2
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	93.18
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	93.18
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	93.17
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	93.16
PRK07940	394	DNA polymerase III subunit delta'; Validated	93.14
PF13555	62	AAA_29: P-loop containing region of AAA domain	93.12
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	93.11

>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family

Probab=99.96  E-value=4.3e-29  Score=243.93  Aligned_cols=123  Identities=18%  Similarity=0.109  Sum_probs=109.0

Q ss_pred             cCCeEEEEEEccc--ceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCcEEEecC
Q 006654          340 INPKKFFTFVGDI--TRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPL  414 (636)
Q Consensus       340 ~~~~~v~v~~GDI--t~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~---~~~~~G~avvT~l  414 (636)
                      +.+.+|.|++|||  |++.      +||||||||++|. ++|||++||+++||++|++||+++.   +++++|++++|+ 
T Consensus        15 ~~~~~i~i~~gDI~~t~~~------vDaIVNaaN~~L~-~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~~~iT~-   86 (186)
T cd02904          15 FLGQKLSLVQSDISIGSID------VEGIVHPTNADID-LKGEVGNALEKKGGKEFVEAVKELRKSNGPLEIAGAAVSQ-   86 (186)
T ss_pred             cCCCEEEEEECCcccccee------ccEEEcCCccccC-CCCcHhHHHHHHcCHHHHHHHHHHHHhcCCCCCCCEEEcc-
Confidence            4568899999999  9997      9999999999999 8999999999999999999998763   789999999998 


Q ss_pred             CCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCcCcc
Q 006654          415 PSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNEDIR  486 (636)
Q Consensus       415 ~~~~~~~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~~~~  486 (636)
                            .+.|+|+||||+|||.|+..          +..++|++||++||++|     .|||||+||++.+-.|.-+
T Consensus        87 ------a~~Lp~k~VIHtVgP~~~~~----------~~~~~L~~~~~~~L~~A~e~~~~SIAfPaIstG~~g~P~~~  147 (186)
T cd02904          87 ------AHGLPAKFVIHCHSPQWGSD----------KCEEQLEKTVKNCLAAAEDKKLKSIAFPSLPSGRNGFPKQT  147 (186)
T ss_pred             ------CCCCCCCEEEEeCCCCCCCC----------chHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHH
Confidence                  24589999999999999653          24789999999999986     5999999999977776543

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r

>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family

Probab=99.96  E-value=1.7e-28  Score=230.57  Aligned_cols=119  Identities=20%  Similarity=0.242  Sum_probs=106.3

Q ss_pred             EEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCcEEEecCCCCCCCCCC
Q 006654          344 KFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGR  423 (636)
Q Consensus       344 ~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~~~~~~G~avvT~l~~~~~~~~~  423 (636)
                      +|.|++||||+++      +|||||+||+.|. ++|||++||+++||++|++||++. +++++|++++|+       ...
T Consensus         2 ki~l~~GdIt~~~------vDaIVNaan~~l~-~~ggv~~aI~~aaG~~l~~e~~~~-~~~~~G~~~~T~-------~~~   66 (140)
T cd02905           2 RIVLWEGDICNLN------VDAIVNSTNETLT-DKNPISDKIFARAGSELREEIQTL-GGCRTGEAKLTK-------GYN   66 (140)
T ss_pred             eEEEEeCccCccc------CCEEEeCCccccC-CCCcHHHHHHHHhCHHHHHHHHHh-CCCCCCcEEEec-------CCC
Confidence            5889999999998      9999999999999 899999999999999999999987 779999999999       245


Q ss_pred             CCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCcC
Q 006654          424 EGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNED  484 (636)
Q Consensus       424 l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~~  484 (636)
                      |+|+||||+|||+|+...+       ..+.++|++||+++|+.|     .|||||+||++....|.
T Consensus        67 L~~k~VIH~vgP~~~~~~~-------~~~~~~L~~~~~~~L~~a~~~~~~SIAfPai~tG~~gfP~  125 (140)
T cd02905          67 LPARFIIHTVGPKYNVKYR-------TAAENALYSCYRNVLQLAKELGLESIALCVISSEKRNYPP  125 (140)
T ss_pred             CCccEEEEecCCccCCCCC-------cHHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCH
Confidence            8899999999999987533       245789999999999986     59999999988776654

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal

>PRK04143 hypothetical protein; Provisional

Probab=99.94  E-value=2.2e-26  Score=236.05  Aligned_cols=126  Identities=27%  Similarity=0.255  Sum_probs=108.6

Q ss_pred             CCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCC-----ChhhHHHHHhhcHHHHHHHHHhc----CCCCCCcEEE
Q 006654          341 NPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGG-----GGVNAAIFSAAGPALEVATAERA----KSLYPGNSVI  411 (636)
Q Consensus       341 ~~~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~g-----gGVa~AI~~aaG~~l~~e~~~~~----~~~~~G~avv  411 (636)
                      .+.+|.||+||||++.      +||||||||+.|. ++     |||++||+++||++|+++|+++.    ..+++|+|++
T Consensus        81 ~~~~i~i~~GDIt~l~------vDAIVNAANs~L~-g~~~p~~ggId~aI~~aAG~~L~~eC~~~~~~~g~~~~~G~a~i  153 (264)
T PRK04143         81 KYDNIFLWQGDITRLK------VDAIVNAANSRLL-GCFQPNHDCIDNAIHTFAGVQLRLDCAEIMTEQGRKEATGQAKI  153 (264)
T ss_pred             CCCEEEEEECCcceee------cCEEEeCcccccc-cCCCCCCCcHHHHHHHHhChHHHHHHHHHHHHcCCCCCCceEEE
Confidence            4678999999999998      9999999999998 54     89999999999999999999873    4689999999


Q ss_pred             ecCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCcCcc
Q 006654          412 VPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNEDIR  486 (636)
Q Consensus       412 T~l~~~~~~~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~~~~  486 (636)
                      |+      + +.|+|+||||||||.|+.+..      .....++|++||++||+.|     .||||||||+|.+..|.-+
T Consensus       154 T~------~-~nLp~kyVIHtVgP~~~~g~~------~~~~~~~L~~cy~s~L~~A~~~~~kSIAfP~IsTGi~gfP~~~  220 (264)
T PRK04143        154 TR------A-YNLPAKYVIHTVGPIIRKQPV------SPIRADLLASCYRSCLKLAEKAGLKSIAFCCISTGVFGFPKEE  220 (264)
T ss_pred             ec------C-CCCCCCEEEEECCCcccCCCC------CcchHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHH
Confidence            99      3 458899999999999977321      1245789999999999986     5999999999987776544

>cd02906 Macro_1 Macro domain, Unknown family 1

Probab=99.94  E-value=2.4e-26  Score=217.79  Aligned_cols=122  Identities=26%  Similarity=0.229  Sum_probs=104.0

Q ss_pred             EEEEEEcccceecccCcccccEEEeCCCCCCcC----CCChhhHHHHHhhcHHHHHHHHHhc----CCCCCCcEEEecCC
Q 006654          344 KFFTFVGDITRLYTGGGLCCNVIANAANWRLKP----GGGGVNAAIFSAAGPALEVATAERA----KSLYPGNSVIVPLP  415 (636)
Q Consensus       344 ~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~----~ggGVa~AI~~aaG~~l~~e~~~~~----~~~~~G~avvT~l~  415 (636)
                      +|+|++|||+++.      +||||||||+.|..    ++|||++||+++||++|++||+++.    +.+++|++++|+  
T Consensus         1 ~i~v~~GdIt~~~------~DaIVNaaN~~l~~~~g~~~ggv~~aI~~~aG~~l~~e~~~~~~~~g~~~~~G~a~~T~--   72 (147)
T cd02906           1 SIYLWKGDITTLK------VDAIVNAANSTLLGCFQPLHRCIDNIIHTFAGPQLRQACFELMTKQGREEPTGQAKITP--   72 (147)
T ss_pred             CeEEEECCcCCcc------CCEEECCCCcccCcCcCCCCCcHHHHHHHHhCHHHHHHHHHHHHhcCCCCCCCeEEEEe--
Confidence            4789999999998      99999999999971    3489999999999999999998873    368999999999  


Q ss_pred             CCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCcC
Q 006654          416 STSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNED  484 (636)
Q Consensus       416 ~~~~~~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~~  484 (636)
                           .+.|+|+||||+|||.|.....+      ..+.++|++||+++|+.|     .|||||+||++.+..+.
T Consensus        73 -----~~~L~~k~VIHavgP~~~~~~~~------~~~~~~L~~~~~~~L~~a~~~~~~sIA~P~i~tG~~g~p~  135 (147)
T cd02906          73 -----GYNLPAKYVIHTVGPIIERGLTT------PIHRDLLAKCYLSCLDLAEKAGLKSIAFCCISTGLFGFPQ  135 (147)
T ss_pred             -----CCCCCCCEEEEECCCcccCCCCC------ccHHHHHHHHHHHHHHHHHHcCCCEEEECcccccCCCCCH
Confidence                 24478999999999999765320      245789999999999987     69999999988766553

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a macro domain, either as a stand-alone domain or in addition to a C-terminal SIR2 (silent information regulator 2) domain.

>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family

Probab=99.92  E-value=2.8e-25  Score=214.48  Aligned_cols=119  Identities=33%  Similarity=0.335  Sum_probs=104.9

Q ss_pred             EEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCcEEEecCCCCCCCCCC
Q 006654          344 KFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGR  423 (636)
Q Consensus       344 ~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~~~~~~G~avvT~l~~~~~~~~~  423 (636)
                      +|+|++|||+++.      +||||||||+.|. ++|||++||+++||++|++||+++ +++++|++++|+       .+.
T Consensus         1 ~i~i~~GdI~~~~------~daIVn~an~~l~-~~ggv~~ai~~~~G~~l~~e~~~~-~~~~~G~~v~T~-------~~~   65 (165)
T cd02908           1 KIEIIQGDITKLE------VDAIVNAANSSLL-GGGGVDGAIHRAAGPELLEECREL-RGCPTGEAVITS-------GYN   65 (165)
T ss_pred             CeEEEecccceee------cCEEEECCCCccc-CCCcHHHHHHHHhCHHHHHHHHHh-CCCCCCCEEEee-------CCC
Confidence            4789999999998      9999999999999 899999999999999999999998 678999999998       245


Q ss_pred             CCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCcCc
Q 006654          424 EGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNEDI  485 (636)
Q Consensus       424 l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~~~  485 (636)
                      |+|+||||+|||.|.....        ...++|++||+++|+.+     .|||||+||.+.+..+.-
T Consensus        66 l~~~~IiH~v~P~~~~~~~--------~~~~~L~~~~~~~L~~a~~~~~~sIa~P~igtG~~g~p~~  124 (165)
T cd02908          66 LPAKYVIHTVGPVWRGGQH--------NEAELLASCYRNSLELARENGLRSIAFPAISTGVYGYPLD  124 (165)
T ss_pred             CCCCEEEEEcCCcccCCCC--------cHHHHHHHHHHHHHHHHHHcCCCEEEECceecCCCCCCHH
Confidence            8899999999999976521        45799999999999975     589999999886665543

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.

>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family

Probab=99.92  E-value=6.1e-25  Score=214.06  Aligned_cols=122  Identities=29%  Similarity=0.318  Sum_probs=107.4

Q ss_pred             CeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHh---cCCCCCCcEEEecCCCCC
Q 006654          342 PKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAER---AKSLYPGNSVIVPLPSTS  418 (636)
Q Consensus       342 ~~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~---~~~~~~G~avvT~l~~~~  418 (636)
                      |++|+|++|||+++.      +||||||||..|. ++|||++||+++||++|++||+++   .+++++|++++|+     
T Consensus         1 ~~~i~i~~GdI~~~~------~DaIVn~an~~~~-~~ggv~~ai~~~~G~~l~~e~~~~~~~~g~~~~G~~~~T~-----   68 (175)
T cd02907           1 GVTLSVIKGDITRFP------VDAIVNAANEDLK-HGGGLALAIVKAGGPEIQEESDEYVRKNGPVPTGEVVVTS-----   68 (175)
T ss_pred             CcEEEEEECCcceee------cCEEEECCCCCcC-CCCCHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCcEEEec-----
Confidence            578999999999997      9999999999999 899999999999999999999876   3789999999998     


Q ss_pred             CCCCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCcC
Q 006654          419 PLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNED  484 (636)
Q Consensus       419 ~~~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~~  484 (636)
                        .+.|+|++|||+|||.|.....       ..+.++|++||++||+.+     .|||||+||.+....+.
T Consensus        69 --~~~L~~k~IiH~v~P~~~~~~~-------~~~~~~L~~~~~~~L~~a~~~~~~SIA~P~lgtG~~g~p~  130 (175)
T cd02907          69 --AGKLPCKYVIHAVGPRWSGGEA-------EECVEKLKKAILNSLRKAEELGLRSIAIPAISSGIFGFPL  130 (175)
T ss_pred             --CCCCCCCEEEEeCCCcCCCCCC-------chHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCH
Confidence              3458899999999999977532       246799999999999986     59999999988655543

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains

>PRK00431 RNase III inhibitor; Provisional

Probab=99.92  E-value=1.5e-24  Score=211.73  Aligned_cols=122  Identities=32%  Similarity=0.341  Sum_probs=107.7

Q ss_pred             CCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCcEEEecCCCC
Q 006654          341 NPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPLPST  417 (636)
Q Consensus       341 ~~~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~---~~~~~G~avvT~l~~~  417 (636)
                      +|++|.|++|||+++.      +||||||||.+|. ++|||++||+++||++|++||+++.   +++++|++++|+    
T Consensus         1 ~~~~i~i~~Gdi~~~~------~daIVn~aN~~~~-~~ggva~aI~~~~G~~l~~e~~~~~~~~~~l~~G~~~~T~----   69 (177)
T PRK00431          1 MGMRIEVVQGDITELE------VDAIVNAANSSLL-GGGGVDGAIHRAAGPEILEECRELRQQQGPCPTGEAVITS----   69 (177)
T ss_pred             CCcEEEEEeCCccccc------CCEEEECCCcccc-CCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEec----
Confidence            4689999999999997      9999999999999 8999999999999999999999873   789999999998    


Q ss_pred             CCCCCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCcC
Q 006654          418 SPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNED  484 (636)
Q Consensus       418 ~~~~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~~  484 (636)
                         .+.|+|++|||+|||.|+....        .+.+.|++||+++|+.+     .|||||+||.+....+-
T Consensus        70 ---~~~l~~~~IiH~v~P~~~~~~~--------~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~  130 (177)
T PRK00431         70 ---AGRLPAKYVIHTVGPVWRGGED--------NEAELLASAYRNSLRLAAELGLRSIAFPAISTGVYGYPL  130 (177)
T ss_pred             ---CCCCCCCEEEEecCCeecCCCC--------cHHHHHHHHHHHHHHHHHHcCCceEEECccccCccCCCH
Confidence               2458899999999999976532        25799999999999875     69999999988655553

>cd02903 Macro_BAL_like Macro domain, BAL_like family

Probab=99.91  E-value=3e-24  Score=201.19  Aligned_cols=115  Identities=25%  Similarity=0.236  Sum_probs=100.5

Q ss_pred             EEEEEEcccceecccCcccccEEEeCCCCC-CcCCCChhhHHHHHhhcHHHHHHHHHhcCCCC-CCcEEEecCCCCCCCC
Q 006654          344 KFFTFVGDITRLYTGGGLCCNVIANAANWR-LKPGGGGVNAAIFSAAGPALEVATAERAKSLY-PGNSVIVPLPSTSPLC  421 (636)
Q Consensus       344 ~v~v~~GDIt~~~~~~~~~~daIVNaaN~~-L~~~ggGVa~AI~~aaG~~l~~e~~~~~~~~~-~G~avvT~l~~~~~~~  421 (636)
                      +|+|++|||++++      +|||||+||+. +. ++|||++||+++||++|++||+++ ..+. +|++++|+       .
T Consensus         2 ~i~i~~GdI~~~~------~DaIVN~an~~~~~-~~ggv~~aI~~~~G~~l~~~~~~~-~~~~~~G~~~vT~-------~   66 (137)
T cd02903           2 TLQVAKGDIEDET------TDVIVNSVNPDLFL-LKGGVSKAILRKAGPELQKELDKA-KLGQTVGSVIVTK-------G   66 (137)
T ss_pred             EEEEEeCccCCcc------CCEEEECCCCccCC-CCCCHHHHHHHhccHHHHHHHHHH-cCCCCCCeEEEec-------C
Confidence            6899999999998      99999999999 66 899999999999999999999998 4444 69999998       2


Q ss_pred             CCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCcC
Q 006654          422 GREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNED  484 (636)
Q Consensus       422 ~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~~  484 (636)
                      +.|+|+||||+++|+|...           ..+.|++||++||+.+     .|||||+||++.+..+.
T Consensus        67 ~~L~~k~IiH~~~p~~~~~-----------~~~~l~~~~~~~L~~a~~~~~~SIAfP~igtG~~g~p~  123 (137)
T cd02903          67 GNLPCKYVYHVVLPNWSNG-----------ALKILKDIVSECLEKCEELSYTSISFPAIGTGNLGFPK  123 (137)
T ss_pred             CCCCCCEEEEecCCCCCCc-----------hHHHHHHHHHHHHHHHHHCCCcEEEECCCcCcCCCCCH
Confidence            4478999999999999643           3689999999999975     69999999988765543

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin

>COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only]

Probab=99.90  E-value=1.2e-23  Score=203.97  Aligned_cols=121  Identities=35%  Similarity=0.394  Sum_probs=105.9

Q ss_pred             CeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc-----CCCCCCcEEEecCCC
Q 006654          342 PKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA-----KSLYPGNSVIVPLPS  416 (636)
Q Consensus       342 ~~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~-----~~~~~G~avvT~l~~  416 (636)
                      +..|.+++||||++.      +|||||+||+.|. +||||+.||++++||+|+++|.+..     +.+++|+|++|+   
T Consensus         2 ~~~i~~v~GDIt~~~------~daIVnaAN~~l~-~gGGVd~AI~~~~g~~l~~~~~~~~~~~~~~~~~~G~Avit~---   71 (179)
T COG2110           2 MTNIRVVQGDITKLE------ADAIVNAANSQLL-GGGGVAGAIHRAAGPQLEEECAEIAPKRGGGRIPVGEAVITE---   71 (179)
T ss_pred             CceEEEEecccceee------hhheeecccccCC-CCCcHHHHHHHHhhHHHHHHHHHHhhhhcCCCCCceEEEEcc---
Confidence            467999999999997      9999999999999 9999999999999999999999974     336789999999   


Q ss_pred             CCCCCCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCcC
Q 006654          417 TSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNED  484 (636)
Q Consensus       417 ~~~~~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~~  484 (636)
                          .++|+.+||||+|||.|....+        ...+.|+.||+++|+++     .|||||+|+++.+-.+-
T Consensus        72 ----~~~l~a~~ViH~vgp~~~~g~~--------~~~e~l~~a~~~~l~~a~~~g~~SiAfPaistGv~G~p~  132 (179)
T COG2110          72 ----AGRLPAKYVIHTVGPSWRGGSK--------DEAELLAAAYRAALRLAKEAGVRSVAFPAISTGVYGFPL  132 (179)
T ss_pred             ----CcCCCCCEEEecCCCcccCCCh--------hHHHHHHHHHHHHHHHHHHcCCceeecccccCcccCCCH
Confidence                3557789999999999877643        35689999999999986     59999999988765543

>cd03330 Macro_2 Macro domain, Unknown family 2

Probab=99.88  E-value=2.2e-22  Score=187.46  Aligned_cols=114  Identities=30%  Similarity=0.309  Sum_probs=100.9

Q ss_pred             EEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCcEEEecCCCCCCCCCCC
Q 006654          345 FFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGRE  424 (636)
Q Consensus       345 v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~~~~~~G~avvT~l~~~~~~~~~l  424 (636)
                      |++++|||+++.      +|||||++|..|. ++|||+++|++++|++++++|.+. +++++|++++|+       .+.|
T Consensus         2 i~i~~GdI~~~~------~DaIVn~~N~~~~-~g~Gva~ai~~~~G~~~~~~~~~~-~~~~~G~~~~t~-------~~~l   66 (133)
T cd03330           2 LEVVQGDITKVD------ADAIVNAANSRLR-MGGGVAGAIKRAGGSVIEREAVRK-APIPVGEAVITG-------AGDL   66 (133)
T ss_pred             EEEEEccccccc------CCEEEeCCCCCCC-CCCcHHHHHHHHhCHHHHHHHHHc-CCCCCCeEEEEe-------CCCC
Confidence            789999999997      9999999999999 899999999999999999999886 789999999997       2457


Q ss_pred             CccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhHH-----HhhccccCCCCCCCc
Q 006654          425 GVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFL-----SIVRSQEKLSKGCNE  483 (636)
Q Consensus       425 ~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~-----siaf~~~~~~~~~~~  483 (636)
                      +|++|||+++|.+.. .         ...+.|++||+++|+.+.     |||||+||.+.+..+
T Consensus        67 ~~k~Iih~~~~~~~~-~---------~~~~~l~~~~~~~l~~a~~~~~~sIA~P~igtG~~g~~  120 (133)
T cd03330          67 PARYVIHAATMEEPG-R---------SSEESVRKATRAALALADELGIESVAFPAMGTGVGGLP  120 (133)
T ss_pred             CCCEEEEeCCCCCCC-C---------CHHHHHHHHHHHHHHHHHHcCCCEEEECcccccCCCCC
Confidence            889999999998654 2         236799999999999874     999999998866554

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.

>PRK04143 hypothetical protein; Provisional

Probab=99.79  E-value=3.6e-20  Score=190.33  Aligned_cols=197  Identities=15%  Similarity=0.123  Sum_probs=148.8

Q ss_pred             EeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCC-----------ccEEEEeCC---hhHHHHHHHHh
Q 006654          111 LDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEG-----------FSRITLCQN---ENDVQAALDTY  176 (636)
Q Consensus       111 Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Eg-----------fd~Viii~~---~~~vdaiv~~~  176 (636)
                      +.+|.+...+|..-|...+.++|..++++.++.+.+.+.......+           -..+.+...   .-++|+++++.
T Consensus        25 ~~~~~~~~~~~~~~r~l~n~r~p~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~i~~GDIt~l~vDAIVNAA  104 (264)
T PRK04143         25 LPLPNDLEEQQDLLRALANVRPALPLSDEYLNLQDAYLQDENAERGVVDLKDLQPIKYDNIFLWQGDITRLKVDAIVNAA  104 (264)
T ss_pred             ccCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHhhcCcccHHhcCccCCCEEEEEECCcceeecCEEEeCc
Confidence            5667777778888888888888888888877765544321110001           123433332   23578888863


Q ss_pred             --ccCCCCcccC-CCccCCCCCchhhHHHHHH----HHhhcCCCCCCCCCCcccCCCCCCcccccccccccCcceecccc
Q 006654          177 --SGLGPLDTLP-HGSFGQKNPDAKIQLGIMK----FLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLS  249 (636)
Q Consensus       177 --~~Lgpfd~~p-hgc~~~~~~~~~v~~~i~k----~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (636)
                        ..+|+|  .| |||.++ ++|.++|.+|+.    +++++|+..++|.. +        .|.++++.|.++-|.+-|.+
T Consensus       105 Ns~L~g~~--~p~~ggId~-aI~~aAG~~L~~eC~~~~~~~g~~~~~G~a-~--------iT~~~nLp~kyVIHtVgP~~  172 (264)
T PRK04143        105 NSRLLGCF--QPNHDCIDN-AIHTFAGVQLRLDCAEIMTEQGRKEATGQA-K--------ITRAYNLPAKYVIHTVGPII  172 (264)
T ss_pred             ccccccCC--CCCCCcHHH-HHHHHhChHHHHHHHHHHHHcCCCCCCceE-E--------EecCCCCCCCEEEEECCCcc
Confidence              366888  77 899999 999999999985    45556777788852 2        36677888888888888877


Q ss_pred             ccc--chhhcccCChhhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCC-eEEEEe
Q 006654          250 DAA--GEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGN-ARLVLV  319 (636)
Q Consensus       250 ~~~--~~~~~~~l~~~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~~-~~~v~~  319 (636)
                      ..+  +....++|..||.+||.+|++++++|||||+||||+||||.++||+|++++|++|+++++. .+++++
T Consensus       173 ~~g~~~~~~~~~L~~cy~s~L~~A~~~~~kSIAfP~IsTGi~gfP~~~aA~ia~~tv~~fl~~~~~~~~Vif~  245 (264)
T PRK04143        173 RKQPVSPIRADLLASCYRSCLKLAEKAGLKSIAFCCISTGVFGFPKEEAAEIAIKTVLSWLKENPSKLKVVFN  245 (264)
T ss_pred             cCCCCCcchHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence            642  3455778999999999999999999999999999999999999999999999999998865 456553

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=99.79  E-value=1.1e-18  Score=195.06  Aligned_cols=142  Identities=26%  Similarity=0.412  Sum_probs=127.0

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHH
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTD   95 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn~~~~~R~~   95 (636)
                      ...+|.||+|+|+|||||||||+++++..+  +.+|++|.+.     .+..+...+.++|++|++||||+||.++++|..
T Consensus       365 ~~~~p~LVil~G~pGSGKST~A~~l~~~~g--~~~vn~D~lg-----~~~~~~~~a~~~L~~G~sVVIDaTn~~~~~R~~  437 (526)
T TIGR01663       365 DDAPCEMVIAVGFPGAGKSHFCKKFFQPAG--YKHVNADTLG-----STQNCLTACERALDQGKRCAIDNTNPDAASRAK  437 (526)
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHHcC--CeEECcHHHH-----HHHHHHHHHHHHHhCCCcEEEECCCCCHHHHHH
Confidence            346799999999999999999999999877  8899999983     567788999999999999999999999999999


Q ss_pred             HHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCccEEEEeCC
Q 006654           96 FVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQN  165 (636)
Q Consensus        96 l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd~Viii~~  165 (636)
                      |+++ ++.++++++++|++|.++|++|+..|...... ...++++++.+|.++|++|...|||..|..++-
T Consensus       438 ~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~~~~s-~~~vp~~v~~~~~k~fE~Pt~~EGF~~I~~v~f  507 (526)
T TIGR01663       438 FLQCARAAGIPCRCFLFNAPLAQAKHNIAFRELSDSA-HIKIKDMVFNGMKKKFEAPALAEGFIAIHEINF  507 (526)
T ss_pred             HHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhccCCcc-cCCCCHHHHHHHHhhCCCCCcccCceEEEEEeC
Confidence            9999 99999999999999999999999999763221 236788999999999999999999999887653

Note that the EC number for the kinase function is: 2.7.1.78

>smart00506 A1pp Appr-1"-p processing enzyme

Probab=99.78  E-value=2.3e-18  Score=159.26  Aligned_cols=116  Identities=32%  Similarity=0.317  Sum_probs=98.3

Q ss_pred             EEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHH-HHHHHHhc-CCCCCCcEEEecCCCCCCCCC
Q 006654          345 FFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPAL-EVATAERA-KSLYPGNSVIVPLPSTSPLCG  422 (636)
Q Consensus       345 v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l-~~e~~~~~-~~~~~G~avvT~l~~~~~~~~  422 (636)
                      +++++|||+++.      +|+|||++|..+. ++||++++|++++|+++ ++++.+.. +.+++|++++|+.       +
T Consensus         2 i~~~~Gdi~~~~------~d~IV~~~n~~~~-~~~g~a~~i~~~~g~~~~~~~~~~~~~~~~~~G~~~~~~~-------~   67 (133)
T smart00506        2 LKVVKGDITKPR------ADAIVNAANSDGA-HGGGVAGAIARAAGKALEKEAFRKLAGGECPVGTAVVTEG-------G   67 (133)
T ss_pred             eEEEeCCCCccc------CCEEEECCCcccC-CCCcHHHHHHHHhChHHHHHHHHHhcCCCcCCccEEEecC-------C
Confidence            678999999997      9999999999999 89999999999999996 66666553 4799999999982       3


Q ss_pred             CCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCC
Q 006654          423 REGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCN  482 (636)
Q Consensus       423 ~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~  482 (636)
                      .+++++|||+++|.|....        ..+.+.|++||++||+.+     .||+||.||.+....
T Consensus        68 ~~~~~~Iih~~~p~~~~~~--------~~~~~~l~~~~~~~l~~~~~~~~~sIa~P~igtG~~g~  124 (133)
T smart00506       68 NLPAKYVIHAVGPRASGHS--------NEGFELLENAYRNCLELAIELGITSVAIPLIGTGIYGV  124 (133)
T ss_pred             CCCCCEEEEeCCCCCCCCC--------ccHHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCC
Confidence            3778999999999997642        246899999999999875     499999999775443

Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji).

>cd02749 Macro Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases)

Probab=99.76  E-value=5.7e-18  Score=159.51  Aligned_cols=117  Identities=31%  Similarity=0.353  Sum_probs=99.6

Q ss_pred             EEEEEcccce-ecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcC--CCCCCcEEEecCCCCCCCC
Q 006654          345 FFTFVGDITR-LYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAK--SLYPGNSVIVPLPSTSPLC  421 (636)
Q Consensus       345 v~v~~GDIt~-~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~~--~~~~G~avvT~l~~~~~~~  421 (636)
                      |.+++|||++ ..      +|+|||++|..+. +|||++.+|++++|+++++++++...  .+++|++++|+.       
T Consensus         2 i~~~~GDi~~~~~------~d~IVn~~n~~~~-~g~gi~~ai~~~~g~~~~~~~~~~~~~~~~~~G~~~~t~~-------   67 (147)
T cd02749           2 IKVVSGDITKPLG------SDAIVNAANSSGR-DGGGVNLAISKKAGKELEEESKKLRKELELQVGEAVLTKG-------   67 (147)
T ss_pred             EEEEECCCCCCCC------CCEEEeCCCCCCC-CCChHHHHHHHHhCHHHHHHHHHHhcccCCCCCCEEECcC-------
Confidence            6789999999 76      9999999999999 89999999999999999999998742  268999999982       


Q ss_pred             CCCC-ccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCC
Q 006654          422 GREG-VTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCN  482 (636)
Q Consensus       422 ~~l~-~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~  482 (636)
                      +.++ +++|||+++|.|....+       ..+.++|++||++||..+     .|||||.||.+....
T Consensus        68 ~~~~~~~~vih~~~p~~~~~~~-------~~~~~~l~~a~~~~L~~~~~~~~~sIa~P~igtG~~g~  127 (147)
T cd02749          68 YNLDGAKYLIHIVGPKYNQGNN-------KAAFELLKNAYENCLKEAEEKGIKSIAFPLIGTGPAGF  127 (147)
T ss_pred             CCCCcCCEEEEeCCCCCCCCCC-------chHHHHHHHHHHHHHHHHHHcCCCEEEECCcccccCCC
Confidence            2344 89999999999976532       245789999999999875     479999999775544

Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes.

>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family

Probab=99.76  E-value=2.5e-18  Score=168.64  Aligned_cols=134  Identities=19%  Similarity=0.125  Sum_probs=99.1

Q ss_pred             eEEEEEEcccceecc----cCcccccEEEeCCCCCCcCCCChhhHHHHHhhc-HHHHHHHHHh-----cCCCCCCcEEEe
Q 006654          343 KKFFTFVGDITRLYT----GGGLCCNVIANAANWRLKPGGGGVNAAIFSAAG-PALEVATAER-----AKSLYPGNSVIV  412 (636)
Q Consensus       343 ~~v~v~~GDIt~~~~----~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG-~~l~~e~~~~-----~~~~~~G~avvT  412 (636)
                      ..+.++.|+++++..    ....++||||||||+.+. +||||++||++++| ++|+++|++.     .+.+++|++++|
T Consensus        19 ~~v~~~~~~~~~i~~~~~~~~~~~~DaIVnpANs~~~-mgGGvD~AI~~~~G~~~le~~~q~~~~~~~~g~lpvG~a~it   97 (186)
T cd02900          19 KYVCIVNGGLETIEDSVRKLHHGHFDSIVSPANSYGY-LDGGFDLAIRNFFGGKPLETWVQNQLLRKYLGYLPVGSATVV   97 (186)
T ss_pred             CCeEEEeCCceecchhhcccccCccCEEEeCCCcccC-CCCcHHHHHHHHcChHHHHHHHHHHHHHhcCCCCCCCcEEEe
Confidence            446667777766541    011128999999999999 99999999999999 6999999664     388999999999


Q ss_pred             cCCC---CCCCCCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-------HHhhccccCCCCCCC
Q 006654          413 PLPS---TSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-------LSIVRSQEKLSKGCN  482 (636)
Q Consensus       413 ~l~~---~~~~~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-------~siaf~~~~~~~~~~  482 (636)
                      +...   ....+++.+++||||++++.+.....        ...+.|++||+++|..+       .|||||+||++.+..
T Consensus        98 ~~~~l~~~~~~~~~~~~~~iIHaPtm~~P~~~~--------~~~~~l~~a~~~~L~~a~~~~~~i~sIa~P~igTGvgg~  169 (186)
T cd02900          98 PLGRALLEKTIYCRWGIPYLIHAPTMRVPSPVI--------TGTEPVFDAMWNALNAIPKENQEINTLVLPGLGTGYGGV  169 (186)
T ss_pred             cCCCCccccccccccCCCEEEEcCcccCCCCCC--------CcHHHHHHHHHHHHHHHHhccCCCCEEEECchhcCCCCC
Confidence            9211   00013344599999998765531111        23689999999999865       489999999998876


Q ss_pred             cCc
Q 006654          483 EDI  485 (636)
Q Consensus       483 ~~~  485 (636)
                      +.-
T Consensus       170 p~~  172 (186)
T cd02900         170 PPE  172 (186)
T ss_pred             CHH
Confidence            643

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. The yeast protein Ymx7 and related proteins in this family contain a stand-alone macro domain and may be specific phosphatases catalyzing the conversion of ADP-ribose-1"-monophosphate (Appr-1"-p) to ADP-ribose. Appr-1"-p is an intermediate in a metabolic pathway involved in pre-tRNA splicing.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=99.74  E-value=1.1e-17  Score=155.73  Aligned_cols=127  Identities=31%  Similarity=0.418  Sum_probs=100.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC--------c-------HHHHHHHHHHHHhCCCeEEEeCC
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG--------T-------KVQCLTSASSALKKGKSVFLDRC   86 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~--------~-------~~~~~~~~~~~L~~G~~VIID~t   86 (636)
                      ||+|+|+|||||||||+.|++.++  +.+|+.|.++....+        .       ...+...+...+..|.++|+|++
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vvd~~   78 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKALRNGNSVVVDNT   78 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHHHTT-EEEEESS
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHHcCCCceeccC
Confidence            689999999999999999999988  889999998632111        0       11234667788899999999999


Q ss_pred             CCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCC
Q 006654           87 NLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELP  151 (636)
Q Consensus        87 n~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P  151 (636)
                      |+..+.|..|.++ +..++.+.+|+|++|.+++.+|+..|..+.. ....++.+++++|++.|++|
T Consensus        79 ~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~~~-~~~~~~~~~~~~~~~~~e~p  143 (143)
T PF13671_consen   79 NLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNREGD-KRFEVPEEVFDRMLARFEPP  143 (143)
T ss_dssp             --SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHCCCT-TS----HHHHHHHHHHHH--
T ss_pred             cCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCCccc-ccccCcHHHHHHHHHhhccC
Confidence            9999999999999 9999999999999999999999999998653 23358999999999999887

...

>COG4639 Predicted kinase [General function prediction only]

Probab=99.70  E-value=1e-16  Score=150.55  Aligned_cols=136  Identities=27%  Similarity=0.351  Sum_probs=110.9

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCC---------CC----cHHHHHHHHHHHHhCCCeEEEeC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK---------SG----TKVQCLTSASSALKKGKSVFLDR   85 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~---------~~----~~~~~~~~~~~~L~~G~~VIID~   85 (636)
                      |+.|++|+|+|||||||||++....    ...++.|+++...         .+    .++.+...+..+|+.|+..|+|+
T Consensus         1 ~~~LvvL~G~~~sGKsT~ak~n~~~----~~~lsld~~r~~lg~~~~~e~sqk~~~~~~~~l~~~l~qrl~~Gk~tiidA   76 (168)
T COG4639           1 MRILVVLRGASGSGKSTFAKENFLQ----NYVLSLDDLRLLLGVSASKENSQKNDELVWDILYKQLEQRLRRGKFTIIDA   76 (168)
T ss_pred             CceEEEEecCCCCchhHHHHHhCCC----cceecHHHHHHHhhhchhhhhccccHHHHHHHHHHHHHHHHHcCCeEEEEc
Confidence            5689999999999999999987654    3468877776421         12    34455688889999999999999


Q ss_pred             CCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCccEEEEeC
Q 006654           86 CNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQ  164 (636)
Q Consensus        86 tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd~Viii~  164 (636)
                      ||..+++|..++++ +.+|+...+|+|++|.++|.+|+..|.+       .+|.+++.+|.+....+...|+|..+....
T Consensus        77 tn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~~R-------qv~~~VI~r~~r~~~~~l~~e~~~~~~~~~  149 (168)
T COG4639          77 TNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLRER-------QVPEEVIPRMLRETIDLLEKEPFRYVWTLS  149 (168)
T ss_pred             ccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhccch-------hCCHHHHHHHHHHHHhhccCCCeEEEEecC
Confidence            99999999999999 9999999999999999999999997776       699999999998744444467766654443


Q ss_pred             C
Q 006654          165 N  165 (636)
Q Consensus       165 ~  165 (636)
                      .
T Consensus       150 s  150 (168)
T COG4639         150 S  150 (168)
T ss_pred             C
Confidence            3

>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands

Probab=99.69  E-value=4.5e-17  Score=147.21  Aligned_cols=100  Identities=35%  Similarity=0.446  Sum_probs=86.7

Q ss_pred             EeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCcEEEecCCCCCCCCCCCCccEEEEecCCCCCCCCCC
Q 006654          367 ANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPN  443 (636)
Q Consensus       367 VNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~---~~~~~G~avvT~l~~~~~~~~~l~~k~VIH~VgP~~~~~~~~  443 (636)
                      ||+||..|. ++|||+++|++++|++++++|+++.   +.+++|++++|+       .+.+++++|||+|||.|..... 
T Consensus         1 Vn~~N~~~~-~g~Gva~ai~~~~g~~~~~~~~~~~~~~~~~~~G~~~~t~-------~~~l~~~~Iih~v~P~~~~~~~-   71 (118)
T PF01661_consen    1 VNAANCFLS-MGGGVAKAIFKAAGPALQEECKEIKKKGGELPVGEVIVTP-------GGNLPCKYIIHAVGPTYNSPGE-   71 (118)
T ss_dssp             EEEEETTSS-BSSHHHHHHHHHHTHHHHHHHHHHHHHHHSSSTTSEEEEE-------ETTSSSSEEEEEEEEETTTSTS-
T ss_pred             CcCCCCCCC-CCchHHHHHHHhchHHHHHHHHHhhcccCcccCCCeeeec-------CCCccccceEEEecceeccccc-
Confidence            899999999 8999999999999999999998873   669999999998       2456789999999999975422 


Q ss_pred             CCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCC
Q 006654          444 CLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGC  481 (636)
Q Consensus       444 ~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~  481 (636)
                            ....+.|++||+++|+.+     .||+||+||.+..-
T Consensus        72 ------~~~~~~L~~~~~~~l~~a~~~~~~sIa~P~ig~G~~g  108 (118)
T PF01661_consen   72 ------KNSYEALESAYRNALQKAEENGIKSIAFPAIGTGIGG  108 (118)
T ss_dssp             ------TTHHHHHHHHHHHHHHHHHHTTTSEEEEESTTSSTTS
T ss_pred             ------cccHHHHHHHHHHHHHHHHHcCCcccccCcccCCCCC
Confidence                  257899999999999975     59999999977543

Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=99.67  E-value=9.1e-16  Score=161.05  Aligned_cols=126  Identities=28%  Similarity=0.398  Sum_probs=104.1

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC---------c--H-----HHHHHHHHHHHhCCCeEE
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG---------T--K-----VQCLTSASSALKKGKSVF   82 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~---------~--~-----~~~~~~~~~~L~~G~~VI   82 (636)
                      |+.+|+|+|+|||||||+|+.|++.++ .+.+++.|.++.....         .  .     ......+.+++..|..||
T Consensus         1 m~~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~vI   79 (300)
T PHA02530          1 MMKIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAALKSGKSVI   79 (300)
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence            578999999999999999999999983 3788999998632111         0  1     112355567778899999


Q ss_pred             EeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCC
Q 006654           83 LDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELP  151 (636)
Q Consensus        83 ID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P  151 (636)
                      +|++++...+|..|..+ +..++.+.+++|++|.+++.+|+..|..+      .++.+++++|+++++.+
T Consensus        80 id~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~~------~~~~~~i~~~~~~~~~~  143 (300)
T PHA02530         80 ISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGER------AVPEDVLRSMFKQMKEY  143 (300)
T ss_pred             EeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCcC------CCCHHHHHHHHHHHHHh
Confidence            99999999999999999 88888888899999999999999999654      58999999999887654

>KOG2633 consensus Hismacro and SEC14 domain-containing proteins [Chromatin structure and dynamics; Transcription]

Probab=99.67  E-value=1.1e-16  Score=156.25  Aligned_cols=114  Identities=25%  Similarity=0.271  Sum_probs=97.9

Q ss_pred             CeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCcEEEecCCCCCCCC
Q 006654          342 PKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLC  421 (636)
Q Consensus       342 ~~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~~~~~~G~avvT~l~~~~~~~  421 (636)
                      .-.+.+|+||++.+.      +||||      |. +|||++.+|+++|||++..||..+ ..|++|.+.+|.       +
T Consensus        32 ~~~i~lwr~d~~~l~------v~avv------l~-~g~~~~~ai~~aagp~l~~e~~~~-~~c~tG~ak~t~-------~   90 (200)
T KOG2633|consen   32 NGGISLWRGDGKTLE------VDAVV------LL-GGKGVDEAIHRAAGPELPLECAYL-HGCRTGAAKSTG-------G   90 (200)
T ss_pred             ccCeeEeeccccccc------ceeee------ec-cCcchhHHHHHhcCCcchHHHHhh-cCCCCCeeEecC-------C
Confidence            356889999999998      99999      66 899999999999999999999998 449999999998       2


Q ss_pred             CCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCcC
Q 006654          422 GREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNED  484 (636)
Q Consensus       422 ~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~~  484 (636)
                      ..|++++|||+|||.|...+-        +...-|..||+|||..|     .+||||+|+.+...++.
T Consensus        91 ~~Lpak~vIHtvgP~~~~d~~--------~~~~~L~~~~rs~L~la~~~~ls~iAf~~I~sg~~gyP~  150 (200)
T KOG2633|consen   91 YGLPAKRVIHTVGPRWKEDKL--------QECYFLHSCYRSCLDLAIEKLLSSIAFPKISSGRVGYPW  150 (200)
T ss_pred             CCCceeEEEEecCchhhccch--------HHHHHHHHHHHHHHHHHHHhccceeeeeeeeccccCccH
Confidence            347889999999999976532        33347999999999986     47999999988777764

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=99.66  E-value=9.1e-18  Score=194.67  Aligned_cols=127  Identities=19%  Similarity=0.088  Sum_probs=108.1

Q ss_pred             hcCCeEEEEEE----cccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHH---HHHHHHh-----------
Q 006654          339 HINPKKFFTFV----GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPAL---EVATAER-----------  400 (636)
Q Consensus       339 ~~~~~~v~v~~----GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l---~~e~~~~-----------  400 (636)
                      ..+|.++.+++    ||||.+.      +|+|||+||..|. +||||++||+++||+++   +++|+++           
T Consensus       471 ~~~~~~~~~~~~~~~~dit~~~------~d~ivnaan~~ll-~~~g~~~ai~~~~g~~~~~~~~~~~~~~~~~~~l~~~~  543 (725)
T PRK13341        471 GQEGERLAILRDRLWSDITWQR------HDRVLNLANRSLL-WALGPLRAVPEGGVTVLCSSQEDSDRLVAQLELLDPLE  543 (725)
T ss_pred             hhcccHHHHHHHHHhccccccc------cceeEEccCccch-hhhhHHHhccCCCeEEecCCHHHHHHHHHHHhhcchhh
Confidence            34678899999    9999997      9999999999999 99999999999999999   8888762           


Q ss_pred             ------------------------cCCCCCCcEEEec---------CCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCC
Q 006654          401 ------------------------AKSLYPGNSVIVP---------LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDG  447 (636)
Q Consensus       401 ------------------------~~~~~~G~avvT~---------l~~~~~~~~~l~~k~VIH~VgP~~~~~~~~~~~~  447 (636)
                                              .|+|++|++++|.         |+    ..++|.|++|||+|||.|....+     
T Consensus       544 rp~~~~~~~~~~~~l~~~~~f~~~~g~~~~g~a~~T~~~~~~l~~~~~----~~g~L~~~~vIh~vGp~~~~~~~-----  614 (725)
T PRK13341        544 RPVLLDGSLEALKTLPANLQFEWIGGRLPTGDAVVTKELWQQLTEKLT----PAGKLKLLYSIPAVGPAWALLSE-----  614 (725)
T ss_pred             CccccccchhhhhhcCcccceeeeeccCcccchhhHHHHHHHHHHhcC----CCCeeEEEEeccccChHhhhcCc-----
Confidence                                    4889999999991         22    14678999999999999977532     


Q ss_pred             CccchHHHHHHHHHHHHHhH-----H----------HhhccccCCCCCCCcCcc
Q 006654          448 DYVKGCEILRKAYTSLFEGF-----L----------SIVRSQEKLSKGCNEDIR  486 (636)
Q Consensus       448 ~~~~~~~~L~~ay~~~L~~a-----~----------siaf~~~~~~~~~~~~~~  486 (636)
                           .+.|.+||+++|..|     .          |||||+|+.+.+-.|.-+
T Consensus       615 -----~~~l~~~~~~~L~~Aee~~~~~~~~~~~~~~sia~p~istgv~~~p~~~  663 (725)
T PRK13341        615 -----DELLYKALYSALLEAEELWLKLQWDQSLLQQSLEMPGWSTGIEQWPEEL  663 (725)
T ss_pred             -----cchhHHHHHHHHHHHHHHhcccccchhHHHHHHHhcCCccceecCCccc
Confidence                 479999999999974     5          999999998877766544

>PRK06762 hypothetical protein; Provisional

Probab=99.62  E-value=1.2e-14  Score=139.49  Aligned_cols=147  Identities=14%  Similarity=0.103  Sum_probs=110.3

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCC--------CcHHHHHHHHHHHHhCCCeEEEeCCCCCH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS--------GTKVQCLTSASSALKKGKSVFLDRCNLER   90 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~--------~~~~~~~~~~~~~L~~G~~VIID~tn~~~   90 (636)
                      ||.+|+|+|+|||||||+|+.|++.++..+.+++.|.++....        .....+...+...+..|..||+|+++...
T Consensus         1 m~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~vild~~~~~~   80 (166)
T PRK06762          1 MTTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRVKDGPGNLSIDLIEQLVRYGLGHCEFVILEGILNSD   80 (166)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhccccCCCCCcCHHHHHHHHHHHHhCCCEEEEchhhccH
Confidence            6899999999999999999999999865577889999874211        12233345555667889999999987777


Q ss_pred             HHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCccEEEEeCChhHH
Q 006654           91 EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDV  169 (636)
Q Consensus        91 ~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd~Viii~~~~~v  169 (636)
                      ..|..+..+ ...+.++..|+|++|.++|.+|+..|...     ...+++.+++++..++.+.   .++.+ +.++...+
T Consensus        81 ~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~-----~~~~~~~l~~~~~~~~~~~---~~~~~-~~~~~~~~  151 (166)
T PRK06762         81 RYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKS-----HEFGEDDMRRWWNPHDTLG---VIGET-IFTDNLSL  151 (166)
T ss_pred             hHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhccccc-----ccCCHHHHHHHHhhcCCcC---CCCeE-EecCCCCH
Confidence            778778778 77787888999999999999999999762     1467888999988876653   23444 33343455


Q ss_pred             HHHHH
Q 006654          170 QAALD  174 (636)
Q Consensus       170 daiv~  174 (636)
                      ++++.
T Consensus       152 ~~v~~  156 (166)
T PRK06762        152 KDIFD  156 (166)
T ss_pred             HHHHH
Confidence            55554

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=99.59  E-value=9.8e-15  Score=142.79  Aligned_cols=133  Identities=21%  Similarity=0.270  Sum_probs=102.7

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcC-C--CeEEeehhhhc---C-CCCC----cHHH-----HHHHHHHHHhCCCeEEEe
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSA-R--PWARICQDTIN---K-GKSG----TKVQ-----CLTSASSALKKGKSVFLD   84 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~-~--~~~~Is~D~ir---~-~~~~----~~~~-----~~~~~~~~L~~G~~VIID   84 (636)
                      .||++.|+|||||||||+.|++.+. .  ...++..|..+   . +..+    ....     ....+..+++ ..-||+|
T Consensus         2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~~ks~~rlldSalk-n~~VIvD   80 (261)
T COG4088           2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESFLKSVERLLDSALK-NYLVIVD   80 (261)
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHHHHHHHHHHHHHhc-ceEEEEe
Confidence            4789999999999999999998875 1  23444544332   1 1111    1111     1133334444 4679999


Q ss_pred             CCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCccEEE
Q 006654           85 RCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRIT  161 (636)
Q Consensus        85 ~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd~Vi  161 (636)
                      ++|+....|..+... ++..+.+++|++.+|.++|.+|+..|+.       +.|++++++++.+|++|.....|+...
T Consensus        81 dtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~erge-------pip~Evl~qly~RfEePn~~~rWDspl  151 (261)
T COG4088          81 DTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERGE-------PIPEEVLRQLYDRFEEPNPDRRWDSPL  151 (261)
T ss_pred             cccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCCC-------CCCHHHHHHHHHhhcCCCCCccccCce
Confidence            999999999999999 9999999999999999999999987766       799999999999999999877788644

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=99.58  E-value=1.9e-14  Score=147.73  Aligned_cols=130  Identities=24%  Similarity=0.332  Sum_probs=104.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhcCCC---CCc-----HHHHHHHHHHHHhCCCeEEEeCCCCCH
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGK---SGT-----KVQCLTSASSALKKGKSVFLDRCNLER   90 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir~~~---~~~-----~~~~~~~~~~~L~~G~~VIID~tn~~~   90 (636)
                      ||+|+|+|||||||+|++|++.+.   ..+.+++.|.++...   ...     .......+.+++..|..||+|++|+..
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~~~~~~e~~~~~~~~~~i~~~l~~~~~VI~D~~~~~~   80 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPVWKEKYEEFIRDSTLYLIKTALKNKYSVIVDDTNYYN   80 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHHhhHHhHHHHHHHHHHHHHHHHhCCCeEEEeccchHH
Confidence            589999999999999999998763   456788888875432   111     112235677788889999999999999


Q ss_pred             HHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCcc
Q 006654           91 EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFS  158 (636)
Q Consensus        91 ~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd  158 (636)
                      ..|..+..+ +..+..+.+|++++|.++|.+|+..|..       .+++++++++..+|++|.....|+
T Consensus        81 ~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~-------~~~~~~i~~l~~r~e~p~~~~~wd  142 (249)
T TIGR03574        81 SMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGE-------KIPNEVIKDMYEKFDEPGTKYSWD  142 (249)
T ss_pred             HHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCC-------CCCHHHHHHHHHhhCCCCCCCCcc
Confidence            999999888 8888888999999999999999998854       367889999999999998654443

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family

Probab=99.57  E-value=5e-16  Score=152.23  Aligned_cols=128  Identities=14%  Similarity=0.163  Sum_probs=100.2

Q ss_pred             HHHHHHHHhccCCCCcccCCCccCCCCCchhhHHHHHHHHhhcC---CCCCCCCCCcccCCCCCCcccccccccccCcce
Q 006654          168 DVQAALDTYSGLGPLDTLPHGSFGQKNPDAKIQLGIMKFLKKVD---APSNTGSTASSTQDPVPPQITEEKNSCLEGQEI  244 (636)
Q Consensus       168 ~vdaiv~~~~~Lgpfd~~phgc~~~~~~~~~v~~~i~k~l~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (636)
                      ++|+++++.+..-    ..+|+.+. +++.++|.+|++-.++..   ..-.+|. ++        .|.+.++.|.++.|.
T Consensus        33 ~vDaIVNaaN~~L----~~ggGV~~-AI~~aaG~~l~~ec~~~~~~~g~~~~G~-~~--------iT~a~~Lp~k~VIHt   98 (186)
T cd02904          33 DVEGIVHPTNADI----DLKGEVGN-ALEKKGGKEFVEAVKELRKSNGPLEIAG-AA--------VSQAHGLPAKFVIHC   98 (186)
T ss_pred             eccEEEcCCcccc----CCCCcHhH-HHHHHcCHHHHHHHHHHHHhcCCCCCCC-EE--------EccCCCCCCCEEEEe
Confidence            5777887643221    22567777 999999999998765431   1223443 11        255677888888888


Q ss_pred             ecccccccchhhcccCChhhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhc
Q 006654          245 TSLLSDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKL  311 (636)
Q Consensus       245 ~~~~~~~~~~~~~~~l~~~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~  311 (636)
                      +.|.|..  ...+++|..||.+||.+|++++++|||||+||||+||||.++||+|++++|++|+.++
T Consensus        99 VgP~~~~--~~~~~~L~~~~~~~L~~A~e~~~~SIAfPaIstG~~g~P~~~aA~i~~~~i~~~l~~~  163 (186)
T cd02904          99 HSPQWGS--DKCEEQLEKTVKNCLAAAEDKKLKSIAFPSLPSGRNGFPKQTAAQLILKAISSYFVST  163 (186)
T ss_pred             CCCCCCC--CchHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            8888864  3446789999999999999999999999999999999999999999999999999985

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=99.57  E-value=2.1e-14  Score=149.23  Aligned_cols=134  Identities=23%  Similarity=0.325  Sum_probs=93.3

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhcCC--CCC-------cHHHHHHHHHHHHhCCCeEEEeCCCC
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKG--KSG-------TKVQCLTSASSALKKGKSVFLDRCNL   88 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir~~--~~~-------~~~~~~~~~~~~L~~G~~VIID~tn~   88 (636)
                      .||+|+|+|||||||+|++|.+.+.   ..+.+++.|.+.-.  ...       .+..+...+.+.|.....||+|+.|+
T Consensus         2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nY   81 (270)
T PF08433_consen    2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNY   81 (270)
T ss_dssp             -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCch
Confidence            4799999999999999999987643   34667787666511  111       12345578888898888999999999


Q ss_pred             CHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCccE
Q 006654           89 EREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSR  159 (636)
Q Consensus        89 ~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd~  159 (636)
                      .+..|.++..+ +..+..+++|++++|.+.|++|+.+|....     .+++++++.|..+||+|.....|+.
T Consensus        82 iKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~-----~~~~e~i~~m~~RfE~P~~~nrWD~  148 (270)
T PF08433_consen   82 IKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPE-----RYPEETIDDMIQRFEEPDPKNRWDS  148 (270)
T ss_dssp             SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S-------S-HHHHHHHHHH---TTSS-GGGS
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCC-----CCCHHHHHHHHHHhcCCCCCCCccC
Confidence            99999999999 999999999999999999999999998732     4899999999999999998666774

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PRK14527 adenylate kinase; Provisional

Probab=99.50  E-value=5.7e-13  Score=131.31  Aligned_cols=128  Identities=23%  Similarity=0.275  Sum_probs=92.4

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-cCC------------------CCCcHHHHHHHHHHHHhC
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NKG------------------KSGTKVQCLTSASSALKK   77 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r~~------------------~~~~~~~~~~~~~~~L~~   77 (636)
                      .+++.+|+++|+|||||||+|+.|+++++  +.+++.|++ +..                  ...+...+...+...+..
T Consensus         3 ~~~~~~i~i~G~pGsGKsT~a~~La~~~~--~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~   80 (191)
T PRK14527          3 QTKNKVVIFLGPPGAGKGTQAERLAQELG--LKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAG   80 (191)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHhC--CCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Confidence            35788999999999999999999999998  667776444 321                  111233345666666654


Q ss_pred             --CCeEEEeCCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhh
Q 006654           78 --GKSVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK  148 (636)
Q Consensus        78 --G~~VIID~tn~~~~~R~~l~~l-~~~g~~v-~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~f  148 (636)
                        +.+||+|+++.+..++..|..+ ...+..+ .+++|++|.+++.+|+..|....+ +.++ .++++++-.+.|
T Consensus        81 ~~~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~-r~dd-~~~~~~~R~~~y  153 (191)
T PRK14527         81 MEPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEG-RSDD-NEETVRRRQQVY  153 (191)
T ss_pred             CCCCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCC-CCCC-CHHHHHHHHHHH
Confidence              4579999999999999888877 6666666 578999999999999999986443 2333 344444444333

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=99.49  E-value=5.8e-13  Score=125.61  Aligned_cols=126  Identities=21%  Similarity=0.217  Sum_probs=95.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC---------CCCc---HHH----HHHHHHHHH-hCCCeEEEe
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG---------KSGT---KVQ----CLTSASSAL-KKGKSVFLD   84 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~---------~~~~---~~~----~~~~~~~~L-~~G~~VIID   84 (636)
                      ||+|+|+|||||||+|+.|++.++  +.+++.|.++..         ....   ...    +...+...+ ..|.++|+|
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~~--~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~vVid   78 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERLG--APFIDGDDLHPPANIAKMAAGIPLNDEDRWPWLQALTDALLAKLASAGEGVVVA   78 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhcC--CEEEeCcccccHHHHHHHHcCCCCCccchhhHHHHHHHHHHHHHHhCCCCEEEE
Confidence            589999999999999999999987  667888888752         1000   111    112223333 478899999


Q ss_pred             CCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCC
Q 006654           85 RCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEG  156 (636)
Q Consensus        85 ~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Eg  156 (636)
                      .++.....|..+..+. .+..+.+|++.+|.+++.+|+..|..+      ..+.+.+..+...|+.|...++
T Consensus        79 ~~~~~~~~r~~~~~~~-~~~~~~~v~l~~~~~~~~~R~~~R~~~------~~~~~~~~~~~~~~~~p~~~~~  143 (150)
T cd02021          79 CSALKRIYRDILRGGA-ANPRVRFVHLDGPREVLAERLAARKGH------FMPADLLDSQFETLEPPGEDEE  143 (150)
T ss_pred             eccccHHHHHHHHhcC-CCCCEEEEEEECCHHHHHHHHHhcccC------CCCHHHHHHHHHHhcCCCCCCC
Confidence            9998888887775554 466788999999999999999999764      3558889999999999986554

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PLN02674 adenylate kinase

Probab=99.48  E-value=4e-13  Score=137.43  Aligned_cols=175  Identities=15%  Similarity=0.222  Sum_probs=118.4

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-cCC------------------CCCcHHHHHHHHHHHHhC---
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NKG------------------KSGTKVQCLTSASSALKK---   77 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r~~------------------~~~~~~~~~~~~~~~L~~---   77 (636)
                      +..|+|+|+|||||||+|+.|++.++  +.||+.+++ |..                  ...+...+...+.++|..   
T Consensus        31 ~~~i~l~G~PGsGKgT~a~~La~~~~--~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~  108 (244)
T PLN02674         31 DKRLILIGPPGSGKGTQSPIIKDEYC--LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC  108 (244)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHcC--CcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCc
Confidence            45688999999999999999999998  888987444 321                  122334445666777744   


Q ss_pred             CCeEEEeCCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccC
Q 006654           78 GKSVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSE  155 (636)
Q Consensus        78 G~~VIID~tn~~~~~R~~l~~l-~~~g~~v-~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~E  155 (636)
                      +++||+|+++++..|.+.|..+ ...+..+ .+++|++|.+++.+|+..|..++..         .+.++..|.+|. .+
T Consensus       109 ~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~---------g~~yn~~~~pp~-~~  178 (244)
T PLN02674        109 QKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSS---------GRTYHTKFAPPK-VP  178 (244)
T ss_pred             CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcccccccc---------CCccccccCCCc-cc
Confidence            3579999999999999999877 6656555 6889999999999999999765432         233444566665 34


Q ss_pred             CccEE----EEeCChhHHHHHHHH---hc-cCCCC-c---ccC--CCccCCCCCchhhHHHHHHHH
Q 006654          156 GFSRI----TLCQNENDVQAALDT---YS-GLGPL-D---TLP--HGSFGQKNPDAKIQLGIMKFL  207 (636)
Q Consensus       156 gfd~V----iii~~~~~vdaiv~~---~~-~Lgpf-d---~~p--hgc~~~~~~~~~v~~~i~k~l  207 (636)
                      +.+++    .+.+.++..+.+.++   |+ ...|. +   ..+  +...++ .....|+..|.++|
T Consensus       179 ~~~~~~g~~L~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~-~~~~eV~~~i~~~l  243 (244)
T PLN02674        179 GVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAE-KPPKEVTAEVQKAL  243 (244)
T ss_pred             CcccccCCccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECC-CCHHHHHHHHHHHh
Confidence            44332    234556666666655   32 33333 1   112  444555 66777778887766

>PRK14531 adenylate kinase; Provisional

Probab=99.48  E-value=1.2e-12  Score=128.24  Aligned_cols=107  Identities=20%  Similarity=0.253  Sum_probs=80.7

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh-hhhcCCC------------------CCcHHHHHHHHHHHHh--C
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINKGK------------------SGTKVQCLTSASSALK--K   77 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~-D~ir~~~------------------~~~~~~~~~~~~~~L~--~   77 (636)
                      |+..|+++|+|||||||+|+.|++.++  +.+|+. |.++...                  ..+...+...+...|.  .
T Consensus         1 ~~~~i~i~G~pGsGKsT~~~~la~~~g--~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~   78 (183)
T PRK14531          1 MKQRLLFLGPPGAGKGTQAARLCAAHG--LRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALN   78 (183)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhC--CCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcc
Confidence            345689999999999999999999998  677887 5555321                  1122223344454554  3


Q ss_pred             CCeEEEeCCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhccc
Q 006654           78 GKSVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        78 G~~VIID~tn~~~~~R~~l~~l-~~~g~~v-~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      +.++|||+++.+..++..|..+ ...+..+ .+++|++|.+++.+|+..|.+
T Consensus        79 ~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r  130 (183)
T PRK14531         79 SGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARGR  130 (183)
T ss_pred             CCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCC
Confidence            5679999999999999998877 6555544 588999999999999999964

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=99.45  E-value=1e-12  Score=125.76  Aligned_cols=139  Identities=18%  Similarity=0.201  Sum_probs=99.3

Q ss_pred             EEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC---------CC-C-----cH-HHHHHHHHHHHhCCCeEEEeCC
Q 006654           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG---------KS-G-----TK-VQCLTSASSALKKGKSVFLDRC   86 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~---------~~-~-----~~-~~~~~~~~~~L~~G~~VIID~t   86 (636)
                      |+|+|+|||||||+|+.|++.++  +.+++.|.+...         .. .     .+ ..+...+...+..|..+|+|.+
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~--~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Vi~~t   78 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLG--AKFIEGDDLHPAANIEKMSAGIPLNDDDRWPWLQNLNDASTAAAAKNKVGIITCS   78 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcC--CeEEeCccccChHHHHHHHcCCCCChhhHHHHHHHHHHHHHHHHhcCCCEEEEec
Confidence            57899999999999999999988  666888886321         10 0     11 1233556667777887899999


Q ss_pred             CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCccEEEEeCCh
Q 006654           87 NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNE  166 (636)
Q Consensus        87 n~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd~Viii~~~  166 (636)
                      ++....|..+   +..+..+.+++|++|.+++.+|+..|..+      ..+.+.+++++..++.|...+.  ++.+++..
T Consensus        79 ~~~~~~r~~~---~~~~~~~~~i~l~~~~e~~~~R~~~R~~~------~~~~~~i~~~~~~~~~~~~~e~--~~~~id~~  147 (163)
T TIGR01313        79 ALKRHYRDIL---REAEPNLHFIYLSGDKDVILERMKARKGH------FMKADMLESQFAALEEPLADET--DVLRVDID  147 (163)
T ss_pred             ccHHHHHHHH---HhcCCCEEEEEEeCCHHHHHHHHHhccCC------CCCHHHHHHHHHHhCCCCCCCC--ceEEEECC
Confidence            8877777655   45566778899999999999999999753      3456778888888888765542  34556655


Q ss_pred             hHHHHHHH
Q 006654          167 NDVQAALD  174 (636)
Q Consensus       167 ~~vdaiv~  174 (636)
                      ...+.+.+
T Consensus       148 ~~~~~~~~  155 (163)
T TIGR01313       148 QPLEGVEE  155 (163)
T ss_pred             CCHHHHHH
Confidence            45554444

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family

Probab=99.45  E-value=5.5e-13  Score=125.12  Aligned_cols=112  Identities=13%  Similarity=0.067  Sum_probs=90.7

Q ss_pred             EEEEEccccee-cccCcccccEEEeCCCCCCcCCCChhhHHHHHh--hcH-HHHHHHHHhcCCCCCCcEEEecCCCCCCC
Q 006654          345 FFTFVGDITRL-YTGGGLCCNVIANAANWRLKPGGGGVNAAIFSA--AGP-ALEVATAERAKSLYPGNSVIVPLPSTSPL  420 (636)
Q Consensus       345 v~v~~GDIt~~-~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~a--aG~-~l~~e~~~~~~~~~~G~avvT~l~~~~~~  420 (636)
                      |.+++|||++. .      +|+|||++|..+. +|+|++.+|.++  +++ ++++.|++.  .+.+|++++++.      
T Consensus         2 i~~v~GDi~~~~~------~d~Iv~~~N~~~~-mG~Gia~~i~~~~p~~~~~~~~~~~~~--~~~~G~~~~~~~------   66 (140)
T cd02901           2 ITYVKGDLLHAPE------AAALAHAVNCDGV-MGKGIALQFKEKFPEFVEEYRAACKKK--ELLLGGVAVLER------   66 (140)
T ss_pred             eEEEcCccccCCC------CCEEEEEEcCCCc-cChHHHHHHHHHCcHHHHHHHHHHHhc--CCCCCcEEEEec------
Confidence            67899999999 6      9999999999999 999999999997  443 777777764  466888877662      


Q ss_pred             CCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhHH-----HhhccccCCCCC
Q 006654          421 CGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFL-----SIVRSQEKLSKG  480 (636)
Q Consensus       421 ~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~-----siaf~~~~~~~~  480 (636)
                      .+.+++++|+|+++|.|....+         ..+.|++|++++++.+.     |||||.||.+-+
T Consensus        67 ~~~~~~~~I~~~~t~~~~~~~~---------~~~~l~~~l~~~~~~a~~~~~~sva~P~iG~G~~  122 (140)
T cd02901          67 GSSLVSRYIYNLPTKVHYGPKS---------RYEAIEKSLRELRAHARDNGIKSVAMPRIGCGLG  122 (140)
T ss_pred             CCCCCceEEEEeeccCCCCCCC---------cHHHHHHHHHHHHHHHHHcCCCEEeeCCCCCcCC
Confidence            2335679999999998865322         36899999999999874     999999997643

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.

>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=99.43  E-value=3.4e-12  Score=123.31  Aligned_cols=153  Identities=18%  Similarity=0.332  Sum_probs=106.1

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh-hhhcCCC-------------------CCcHHHHHHHHHHHH
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINKGK-------------------SGTKVQCLTSASSAL   75 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~-D~ir~~~-------------------~~~~~~~~~~~~~~L   75 (636)
                      ...++.+|++.|.|||||.|++.+++++++  |.|++. |.+|++.                   ..+.+.+..++.++|
T Consensus         4 ~~~~~~IifVlGGPGsgKgTqC~kiv~ky~--ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am   81 (195)
T KOG3079|consen    4 KLDKPPIIFVLGGPGSGKGTQCEKIVEKYG--FTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAM   81 (195)
T ss_pred             cccCCCEEEEEcCCCCCcchHHHHHHHHcC--ceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHH
Confidence            456788999999999999999999999999  999997 5555321                   112334456666666


Q ss_pred             hCC---CeEEEeCCCCCHHHHHHHHHh-C-CCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhh--
Q 006654           76 KKG---KSVFLDRCNLEREQRTDFVKL-G-GPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK--  148 (636)
Q Consensus        76 ~~G---~~VIID~tn~~~~~R~~l~~l-~-~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~f--  148 (636)
                      .+-   ..++||+++++..|+..|... . ....   +++|+++.++|++|+..|...+. +.++..+.+-.|+.-..  
T Consensus        82 ~~~~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~f---vl~fdc~ee~~l~Rll~R~q~~~-R~DDn~esikkR~et~~~~  157 (195)
T KOG3079|consen   82 RSSGDSNGFLIDGYPRNVDQLVEFERKIQGDPDF---VLFFDCPEETMLKRLLHRGQSNS-RSDDNEESIKKRLETYNKS  157 (195)
T ss_pred             HhcCCCCeEEecCCCCChHHHHHHHHHhcCCCCE---EEEEeCCHHHHHHHHHhhcccCC-CCCCchHHHHHHHHHHHHc
Confidence            443   239999999999999999877 5 3443   88999999999999999988644 45555544444433221  


Q ss_pred             cCCCc--cCCccEEEEeCChhHHHHHHH
Q 006654          149 ELPKL--SEGFSRITLCQNENDVQAALD  174 (636)
Q Consensus       149 e~P~~--~Egfd~Viii~~~~~vdaiv~  174 (636)
                      ..|-.  ++.-..+.-++.+.+++++..
T Consensus       158 t~Pvi~~~e~kg~l~~i~a~~~~d~Vf~  185 (195)
T KOG3079|consen  158 TLPVIEYYEKKGKLLKINAERSVDDVFE  185 (195)
T ss_pred             chHHHHHHHccCcEEEecCCCCHHHHHH
Confidence            22222  444345555665555655544

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=99.43  E-value=2.4e-12  Score=125.34  Aligned_cols=105  Identities=22%  Similarity=0.358  Sum_probs=78.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh-hhhcCC------------------CCCcHHHHHHHHHHHHhC--CCe
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINKG------------------KSGTKVQCLTSASSALKK--GKS   80 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~-D~ir~~------------------~~~~~~~~~~~~~~~L~~--G~~   80 (636)
                      +|+++|+|||||||+|+.|+++++  +.+|+. |.++..                  ...+.......+.+++..  +++
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~--~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~   78 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFG--FTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADGSKK   78 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcC--CeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccCCCc
Confidence            489999999999999999999998  788987 455422                  111222233445555543  568


Q ss_pred             EEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654           81 VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (636)
Q Consensus        81 VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~  128 (636)
                      ||||+++.+..++..|..+ ......-.+++|++|.+++.+|+..|...
T Consensus        79 ~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~  127 (183)
T TIGR01359        79 FLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQS  127 (183)
T ss_pred             EEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCcc
Confidence            9999999999999999877 43222224889999999999999999764

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK14532 adenylate kinase; Provisional

Probab=99.43  E-value=2.7e-12  Score=125.83  Aligned_cols=123  Identities=16%  Similarity=0.249  Sum_probs=87.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehh-hhcCC------------------CCCcHHHHHHHHHHHH---hCCC
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQD-TINKG------------------KSGTKVQCLTSASSAL---KKGK   79 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D-~ir~~------------------~~~~~~~~~~~~~~~L---~~G~   79 (636)
                      .|+|+|+|||||||+|+.|++.++  +.+|+.| .+++.                  ...+...+...+.+.+   ..+.
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~g--~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   79 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEERG--MVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEAAG   79 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC--CeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccC
Confidence            378999999999999999999998  7889884 44421                  1112222334444444   3457


Q ss_pred             eEEEeCCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhh
Q 006654           80 SVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQK  147 (636)
Q Consensus        80 ~VIID~tn~~~~~R~~l~~l-~~~g~~v-~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~  147 (636)
                      ++|+|+++.+..|+..+.++ ...+..+ .+++|++|.+++.+|+..|..... +++...+.+.+++...
T Consensus        80 g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~-r~dd~~~~~~~Rl~~~  148 (188)
T PRK14532         80 GAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQG-RPDDNPEVFVTRLDAY  148 (188)
T ss_pred             cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCC-CCCCCHHHHHHHHHHH
Confidence            89999999999999998877 6666555 689999999999999999964322 3444555555555443

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=99.38  E-value=6.1e-12  Score=122.27  Aligned_cols=105  Identities=19%  Similarity=0.304  Sum_probs=80.3

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCC-------------CC------------cHHHHHHHHHHHH
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK-------------SG------------TKVQCLTSASSAL   75 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~-------------~~------------~~~~~~~~~~~~L   75 (636)
                      .+|+|+|+|||||||+|+.|++.++.++.+++.|.++...             .+            ........+.+.+
T Consensus         3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l   82 (175)
T cd00227           3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEAVAAMA   82 (175)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999987667888888764210             00            0112336677888


Q ss_pred             hCCCeEEEeCCCC-CHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           76 KKGKSVFLDRCNL-EREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        76 ~~G~~VIID~tn~-~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      ..|..||+|.++. ....|..+..+  .+.++..|++.+|.++|.+|+.+|..
T Consensus        83 ~~G~~VIvD~~~~~~~~~r~~~~~~--~~~~~~~v~l~~~~~~l~~R~~~R~~  133 (175)
T cd00227          83 RAGANVIADDVFLGRAALQDCWRSF--VGLDVLWVGVRCPGEVAEGRETARGD  133 (175)
T ss_pred             hCCCcEEEeeeccCCHHHHHHHHHh--cCCCEEEEEEECCHHHHHHHHHhcCC
Confidence            9999999999877 55666656555  23567889999999999999999975

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>TIGR01351 adk adenylate kinases

Probab=99.37  E-value=1.8e-11  Score=122.46  Aligned_cols=103  Identities=18%  Similarity=0.207  Sum_probs=79.0

Q ss_pred             EEEEccCCCcHHHHHHHHHHHcCCCeEEeeh-hhhcCC------------------CCCcHHHHHHHHHHHHhC----CC
Q 006654           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINKG------------------KSGTKVQCLTSASSALKK----GK   79 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~-D~ir~~------------------~~~~~~~~~~~~~~~L~~----G~   79 (636)
                      |+++|+|||||||+|+.|++.++  +.+|+. |.++..                  ...+...+...+...|..    ++
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g--~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~~~   79 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYG--LPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDNEN   79 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC--CCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccCC
Confidence            78999999999999999999998  778887 444421                  112333445666677755    56


Q ss_pred             eEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccccc
Q 006654           80 SVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHE  129 (636)
Q Consensus        80 ~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~  129 (636)
                      +||||+++.+..++..|... ..  ....+|+|++|.+++.+|+..|...+
T Consensus        80 ~~ilDGfPrt~~Qa~~l~~~~~~--~~~~vi~L~~~~~~~~~Rl~~R~~~~  128 (210)
T TIGR01351        80 GFILDGFPRTLSQAEALDALLKE--KIDAVIELDVPDEELVERLSGRRICP  128 (210)
T ss_pred             cEEEeCCCCCHHHHHHHHHHhcc--CCCEEEEEECCHHHHHHHHHCCCccC
Confidence            89999999999999888776 42  12258999999999999999997643

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family

Probab=99.36  E-value=2.4e-13  Score=128.05  Aligned_cols=105  Identities=10%  Similarity=0.051  Sum_probs=88.2

Q ss_pred             CCchhhHHHHHHHHhhcCCCCCCCCCCcccCCCCCCcccccccccccCcceecccccccc-hhhcccCChhhhhhhcccC
Q 006654          194 NPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAG-EEVKGTENPEVASVNQNGS  272 (636)
Q Consensus       194 ~~~~~v~~~i~k~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~s~l~~~~  272 (636)
                      +++.++|.+|+.-+++.+. -.+|.. .        .|.++++.|.++-|.+.|.|.... .+.++.|..||.+||.+|.
T Consensus        35 aI~~aaG~~l~~e~~~~~~-~~~G~~-~--------~T~~~~L~~k~VIH~vgP~~~~~~~~~~~~~L~~~~~~~L~~a~  104 (140)
T cd02905          35 KIFARAGSELREEIQTLGG-CRTGEA-K--------LTKGYNLPARFIIHTVGPKYNVKYRTAAENALYSCYRNVLQLAK  104 (140)
T ss_pred             HHHHHhCHHHHHHHHHhCC-CCCCcE-E--------EecCCCCCccEEEEecCCccCCCCCcHHHHHHHHHHHHHHHHHH
Confidence            8899999999988887765 345531 1        356778888888888888887532 2346788999999999999


Q ss_pred             CCCCCccccccCccCCCCCChHHHHHHHHHHHHHHH
Q 006654          273 SSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFV  308 (636)
Q Consensus       273 ~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~  308 (636)
                      +++++|||||+||||+||||.++||+|+++++++|+
T Consensus       105 ~~~~~SIAfPai~tG~~gfP~~~aa~i~l~~v~~~l  140 (140)
T cd02905         105 ELGLESIALCVISSEKRNYPPEAAAHIALRTVRRFL  140 (140)
T ss_pred             HcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999985

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal

>PRK14530 adenylate kinase; Provisional

Probab=99.36  E-value=4.4e-12  Score=127.35  Aligned_cols=173  Identities=13%  Similarity=0.154  Sum_probs=108.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-cCCC------CC----------------cHHHHHHHHHHHHhCC
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NKGK------SG----------------TKVQCLTSASSALKKG   78 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r~~~------~~----------------~~~~~~~~~~~~L~~G   78 (636)
                      .|+++|+|||||||+|+.|++.++  +.+|+.+++ +...      ..                ........+...+...
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~~~~--~~~i~~g~~lr~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~~~l~~~   82 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAEEFG--VEHVTTGDALRANKQMDISDMDTEYDTPGEYMDAGELVPDAVVNEIVEEALSDA   82 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC--CeEEeccHHHHHhccCCcccccchHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Confidence            588999999999999999999998  677876444 3211      01                1122334455566667


Q ss_pred             CeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCcc
Q 006654           79 KSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFS  158 (636)
Q Consensus        79 ~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd  158 (636)
                      .++|+|+++.+..++..+..+...+   .+|+|++|.+++.+|+..|...+..         ...++..+.+|...+..+
T Consensus        83 ~~~IldG~pr~~~q~~~l~~~~~~d---~vI~Ld~~~~~l~~Rl~~R~~~~~~---------g~~~~~~~~~p~~~~~~~  150 (215)
T PRK14530         83 DGFVLDGYPRNLEQAEYLESITDLD---VVLYLDVSEEELVDRLTGRRVCPDC---------GANYHVEFNQPEEEGVCD  150 (215)
T ss_pred             CCEEEcCCCCCHHHHHHHHHhcCCC---EEEEEeCCHHHHHHHHhCCCcCccc---------CCccccCCCCCcccccCc
Confidence            7899999999998887775542222   3889999999999999999764321         223444455665332212


Q ss_pred             E---EEEeCChhHHHHHHHH---hc-cCCCC----cccC--CCccCCCCCchhhHHHHHHHHhh
Q 006654          159 R---ITLCQNENDVQAALDT---YS-GLGPL----DTLP--HGSFGQKNPDAKIQLGIMKFLKK  209 (636)
Q Consensus       159 ~---Viii~~~~~vdaiv~~---~~-~Lgpf----d~~p--hgc~~~~~~~~~v~~~i~k~l~~  209 (636)
                      .   -...+.++..+.+.++   |+ ...|.    ...+  +...++ .+...|+..|..+|.+
T Consensus       151 ~~~~rl~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~-~~~~~v~~~i~~~l~~  213 (215)
T PRK14530        151 ECGGELIQRDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGE-QTPDEVWADIQDAIDD  213 (215)
T ss_pred             ccCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECC-CCHHHHHHHHHHHHhc
Confidence            0   1133444445555544   32 22222    1112  334455 6778888888888864

>COG0645 Predicted kinase [General function prediction only]

Probab=99.34  E-value=1.5e-11  Score=117.88  Aligned_cols=127  Identities=25%  Similarity=0.238  Sum_probs=107.8

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC-------------------cHHHHHHHHHHHHhCCCe
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-------------------TKVQCLTSASSALKKGKS   80 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~-------------------~~~~~~~~~~~~L~~G~~   80 (636)
                      ++++++.|.|||||||+|+.|++.++  ..+|.+|.++...++                   .+..+...+...|..|.+
T Consensus         1 ~~l~l~~Gl~GsGKstlA~~l~~~lg--A~~lrsD~irk~L~g~p~~~r~~~g~ys~~~~~~vy~~l~~~A~l~l~~G~~   78 (170)
T COG0645           1 GRLVLVGGLPGSGKSTLARGLAELLG--AIRLRSDVIRKRLFGVPEETRGPAGLYSPAATAAVYDELLGRAELLLSSGHS   78 (170)
T ss_pred             CeEEEEecCCCccHhHHHHHHHhhcC--ceEEehHHHHHHhcCCcccccCCCCCCcHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            36899999999999999999999998  788999999754333                   123456788899999999


Q ss_pred             EEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCC
Q 006654           81 VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPK  152 (636)
Q Consensus        81 VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~  152 (636)
                      ||+|.++..+.+|..+..+ +..+..+..|.+..|.+++..|+..|...+    .+-.-.+++.+...+++..
T Consensus        79 VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~d~----sDA~~~il~~q~~~~~~~~  147 (170)
T COG0645          79 VVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKGDA----SDATFDILRVQLAEDEPWT  147 (170)
T ss_pred             EEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCCCc----ccchHHHHHHHHhhhCCcc
Confidence            9999999999999999999 999999999999999999999999998722    1445677888888887655

>PRK00279 adk adenylate kinase; Reviewed

Probab=99.34  E-value=3.8e-11  Score=120.63  Aligned_cols=106  Identities=15%  Similarity=0.223  Sum_probs=80.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehh-hhcCC------------------CCCcHHHHHHHHHHHHhC---CC
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQD-TINKG------------------KSGTKVQCLTSASSALKK---GK   79 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D-~ir~~------------------~~~~~~~~~~~~~~~L~~---G~   79 (636)
                      .|++.|+|||||||+|+.|++.++  +.+++.+ .++..                  ...+.......+.+.+..   +.
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~~--~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~~~   79 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKYG--IPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDCKN   79 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC--CcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCccC
Confidence            488999999999999999999998  7788874 44321                  111223344556666654   34


Q ss_pred             eEEEeCCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhccccc
Q 006654           80 SVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEHE  129 (636)
Q Consensus        80 ~VIID~tn~~~~~R~~l~~l-~~~g~~v-~vV~Ld~p~e~l~~R~~~R~~~~  129 (636)
                      +||||+++.+..++..|.+. ...+..+ .+|+|++|.+++.+|+..|...+
T Consensus        80 g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~  131 (215)
T PRK00279         80 GFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICP  131 (215)
T ss_pred             CEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccC
Confidence            79999999999998888766 5555444 68999999999999999997654

>PLN02459 probable adenylate kinase

Probab=99.32  E-value=6.6e-11  Score=121.98  Aligned_cols=184  Identities=14%  Similarity=0.096  Sum_probs=112.0

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh-hhhcC------------------CCCCcHHHHHHHHHHHHhC---
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINK------------------GKSGTKVQCLTSASSALKK---   77 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~-D~ir~------------------~~~~~~~~~~~~~~~~L~~---   77 (636)
                      +..|+++|+|||||||+|+.|++.++  +.||+. |.+|.                  +...+...+...+.+.|..   
T Consensus        29 ~~~ii~~G~PGsGK~T~a~~la~~~~--~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~  106 (261)
T PLN02459         29 NVNWVFLGCPGVGKGTYASRLSKLLG--VPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEE  106 (261)
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhC--CcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc
Confidence            34578899999999999999999998  788886 44432                  2222445556777777754   


Q ss_pred             --CCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHH--H---HhhhcC
Q 006654           78 --GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNR--M---LQKKEL  150 (636)
Q Consensus        78 --G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~r--m---~~~fe~  150 (636)
                        .++||||+++++..|...|..+...   -.+|+|++|.+++.+|+..|...+..... .....+..  +   -..+.+
T Consensus       107 ~~~~g~iLDGFPRt~~Qa~~Le~~~~i---d~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~-Yn~~~~~~~~~~~~~~~~~~  182 (261)
T PLN02459        107 EGESGFILDGFPRTVRQAEILEGVTDI---DLVVNLKLREEVLVEKCLGRRICSECGKN-FNVADIDLKGEDGRPGIVMP  182 (261)
T ss_pred             cCCceEEEeCCCCCHHHHHHHHhcCCC---CEEEEEECCHHHHHHHhhccccccccCcc-ccccccccccccccccccCC
Confidence              2579999999999999988655211   24889999999999999999765432000 00000000  0   000223


Q ss_pred             CCcc-CCccEEEEeCChhHHHHHHHH---hc-cCCCC----cccC--CCccCCCCCchhhHHHHHHHHhhc
Q 006654          151 PKLS-EGFSRITLCQNENDVQAALDT---YS-GLGPL----DTLP--HGSFGQKNPDAKIQLGIMKFLKKV  210 (636)
Q Consensus       151 P~~~-Egfd~Viii~~~~~vdaiv~~---~~-~Lgpf----d~~p--hgc~~~~~~~~~v~~~i~k~l~~~  210 (636)
                      |... +....-.+.+.++..+.+.++   |+ ...|.    ...+  |...++ .....|+.+|.+.|+.+
T Consensus       183 p~~~~~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~-~~~~eV~~~i~~~l~~~  252 (261)
T PLN02459        183 PLLPPPECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELP-GGIPETWPRLLQALNLD  252 (261)
T ss_pred             CCCCCcccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCC-CCHHHHHHHHHHHhchh
Confidence            3211 111111234555566666554   32 22333    1222  445555 67788999999998654

>PRK14528 adenylate kinase; Provisional

Probab=99.31  E-value=7.6e-11  Score=116.09  Aligned_cols=121  Identities=21%  Similarity=0.295  Sum_probs=85.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-cCC------------------CCCcHHHHHHHHHHHHhC---CC
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NKG------------------KSGTKVQCLTSASSALKK---GK   79 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r~~------------------~~~~~~~~~~~~~~~L~~---G~   79 (636)
                      .|++.|+|||||||+|+.|++.++  +.+++.+++ +..                  ...+.......+.+.+.+   ..
T Consensus         3 ~i~i~G~pGsGKtt~a~~la~~~~--~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~~~   80 (186)
T PRK14528          3 NIIFMGPPGAGKGTQAKILCERLS--IPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCKN   80 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC--CCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCccC
Confidence            478999999999999999999998  667776555 321                  011122223445555543   35


Q ss_pred             eEEEeCCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHH
Q 006654           80 SVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRML  145 (636)
Q Consensus        80 ~VIID~tn~~~~~R~~l~~l-~~~g~~v-~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~  145 (636)
                      .+|||+++.+..+...+..+ ...+..+ .+|+|++|.+++.+|+..|....+ +.++.++.+.+|+.
T Consensus        81 g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~g-r~dd~~e~i~~Rl~  147 (186)
T PRK14528         81 GFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEG-RADDNEATIKNRLD  147 (186)
T ss_pred             cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccC-CCCCCHHHHHHHHH
Confidence            69999999999999988777 5444444 688999999999999999976544 34445555555543

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=99.29  E-value=2.6e-11  Score=129.55  Aligned_cols=132  Identities=20%  Similarity=0.230  Sum_probs=101.3

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcC----CCeEEeehhhhcC-----CCCC------------------------------
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSA----RPWARICQDTINK-----GKSG------------------------------   62 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~----~~~~~Is~D~ir~-----~~~~------------------------------   62 (636)
                      +.+|+|+|||||||+++.|+..+.    ....+++.|++..     ...+                              
T Consensus         1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~k~~R~~i~~~le~~v~a~~~g~~   80 (340)
T TIGR03575         1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQWKQFRQELLKYLEHFLVAVINGSE   80 (340)
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            468999999999999999886543    3466788877641     1110                              


Q ss_pred             ----------cHHHH---------------------HHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEE
Q 006654           63 ----------TKVQC---------------------LTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVV  110 (636)
Q Consensus        63 ----------~~~~~---------------------~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~  110 (636)
                                .+...                     ...+...+..+..+|+|++|+.+..|..+..+ +..+..+.+||
T Consensus        81 ~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~V~  160 (340)
T TIGR03575        81 LSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQLF  160 (340)
T ss_pred             ccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHHhCCCEEEEE
Confidence                      01000                     01122333445569999999999999999999 99999999999


Q ss_pred             EeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCc-cCCccEE
Q 006654          111 LDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKL-SEGFSRI  160 (636)
Q Consensus       111 Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~-~Egfd~V  160 (636)
                      +++|.++|.+|+.+|..       .+++++++.|..+||.|.. ...|+.-
T Consensus       161 ld~ple~~l~RN~~R~~-------~v~devie~m~~r~E~P~~~~nrWd~p  204 (340)
T TIGR03575       161 LDCPVESCLLRNKQRPV-------PLPDETIQLMGRKIEKPNPEKNAWEHN  204 (340)
T ss_pred             EeCCHHHHHHHHhcCCC-------CCCHHHHHHHHHHhcCCCCCCCCCCCC
Confidence            99999999999999964       6899999999999999996 6777754

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>PRK14529 adenylate kinase; Provisional

Probab=99.29  E-value=3.2e-11  Score=122.07  Aligned_cols=105  Identities=17%  Similarity=0.171  Sum_probs=81.0

Q ss_pred             EEEEccCCCcHHHHHHHHHHHcCCCeEEeeh-hhhcCCC------------------CCcHHHHHHHHHHHHhC--CCeE
Q 006654           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINKGK------------------SGTKVQCLTSASSALKK--GKSV   81 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~-D~ir~~~------------------~~~~~~~~~~~~~~L~~--G~~V   81 (636)
                      |+|.|+|||||||+|+.|++.++  +.+++. |.+++..                  ..+.+.+...+.+.|..  .+++
T Consensus         3 I~l~G~PGsGK~T~a~~La~~~~--~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~~~g~   80 (223)
T PRK14529          3 ILIFGPNGSGKGTQGALVKKKYD--LAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDGKNGW   80 (223)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC--CCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccCCCcE
Confidence            78899999999999999999998  666764 4444321                  11233445666677744  4679


Q ss_pred             EEeCCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhccccc
Q 006654           82 FLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEHE  129 (636)
Q Consensus        82 IID~tn~~~~~R~~l~~l-~~~g~~v-~vV~Ld~p~e~l~~R~~~R~~~~  129 (636)
                      |||+++++..|.+.|..+ ...+..+ .+++|++|++++.+|+..|..++
T Consensus        81 iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~  130 (223)
T PRK14529         81 LLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCK  130 (223)
T ss_pred             EEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCcccc
Confidence            999999999999998776 5555444 68999999999999999997654

>PLN02200 adenylate kinase family protein

Probab=99.27  E-value=8.3e-11  Score=120.07  Aligned_cols=105  Identities=19%  Similarity=0.403  Sum_probs=78.1

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh-hhhcCC------------------CCCcHHHHHHHHHHHHhC--
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINKG------------------KSGTKVQCLTSASSALKK--   77 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~-D~ir~~------------------~~~~~~~~~~~~~~~L~~--   77 (636)
                      .|.+|+++|+|||||||+|+.|++.++  +.||+. |.++..                  ...+.+.....+.+.+..  
T Consensus        42 ~~~ii~I~G~PGSGKsT~a~~La~~~g--~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~~  119 (234)
T PLN02200         42 TPFITFVLGGPGSGKGTQCEKIVETFG--FKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESSD  119 (234)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhC--CeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Confidence            468999999999999999999999998  778887 555421                  111223333445555542  


Q ss_pred             CCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           78 GKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        78 G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      +.++|||+++.+..++..|..+ ...  .-.+++|++|.+++.+|+..|..
T Consensus       120 ~~~~ILDG~Prt~~q~~~l~~~~~~~--pd~vi~Ld~~~e~~~~Rl~~R~~  168 (234)
T PLN02200        120 NNKFLIDGFPRTEENRIAFERIIGAE--PNVVLFFDCPEEEMVKRVLNRNQ  168 (234)
T ss_pred             CCeEEecCCcccHHHHHHHHHHhccC--CCEEEEEECCHHHHHHHHHcCcC
Confidence            4579999999999999888766 321  12478999999999999999864

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=99.27  E-value=9.1e-11  Score=114.88  Aligned_cols=104  Identities=23%  Similarity=0.304  Sum_probs=80.4

Q ss_pred             EEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-cCC------------------CCCcHHHHHHHHHHHHhC---CCe
Q 006654           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NKG------------------KSGTKVQCLTSASSALKK---GKS   80 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r~~------------------~~~~~~~~~~~~~~~L~~---G~~   80 (636)
                      |+++|+|||||||+|+.|++.++  +.+++.|++ +..                  .......+...+...|..   ++.
T Consensus         2 I~i~G~pGsGKst~a~~La~~~~--~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~   79 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKYG--LPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDCKKG   79 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC--CeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCC
Confidence            78999999999999999999998  778887554 321                  111223344566666654   578


Q ss_pred             EEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654           81 VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (636)
Q Consensus        81 VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~  128 (636)
                      +|+|+++.+..++..|... ...+....+|+|++|.+++.+|+..|...
T Consensus        80 ~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~  128 (194)
T cd01428          80 FILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRIC  128 (194)
T ss_pred             EEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcC
Confidence            9999999999999888777 54445557899999999999999999864

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK13808 adenylate kinase; Provisional

Probab=99.27  E-value=6.9e-11  Score=125.78  Aligned_cols=102  Identities=17%  Similarity=0.274  Sum_probs=78.3

Q ss_pred             EEEEccCCCcHHHHHHHHHHHcCCCeEEeeh-hhhcCC------------------CCCcHHHHHHHHHHHHhC---CCe
Q 006654           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINKG------------------KSGTKVQCLTSASSALKK---GKS   80 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~-D~ir~~------------------~~~~~~~~~~~~~~~L~~---G~~   80 (636)
                      |+|+|+|||||||+|+.|++.++  +.||+. |.|+..                  ...+.+.+..++.+.|..   ..+
T Consensus         3 Iiv~GpPGSGK~T~a~~LA~~yg--l~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~~G   80 (333)
T PRK13808          3 LILLGPPGAGKGTQAQRLVQQYG--IVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAANG   80 (333)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC--CceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccccCC
Confidence            78899999999999999999998  678886 444421                  112334444566666643   357


Q ss_pred             EEEeCCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhcc
Q 006654           81 VFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRI  126 (636)
Q Consensus        81 VIID~tn~~~~~R~~l~~l-~~~g~~v-~vV~Ld~p~e~l~~R~~~R~  126 (636)
                      ||||+++.+..|.+.|..+ ...+..+ .+|+|++|.+++++|+..|.
T Consensus        81 ~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~  128 (333)
T PRK13808         81 FILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRV  128 (333)
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCc
Confidence            9999999999999988777 5555544 68899999999999999884

>PRK02496 adk adenylate kinase; Provisional

Probab=99.26  E-value=8.1e-11  Score=115.06  Aligned_cols=119  Identities=21%  Similarity=0.261  Sum_probs=81.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-cC------------------CCCCcHHHHHHHHHHHHhC---CC
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALKK---GK   79 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r~------------------~~~~~~~~~~~~~~~~L~~---G~   79 (636)
                      .|++.|+|||||||+|+.|++.++  +.+++.+++ +.                  +...........+.+.+..   ..
T Consensus         3 ~i~i~G~pGsGKst~a~~la~~~~--~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~   80 (184)
T PRK02496          3 RLIFLGPPGAGKGTQAVVLAEHLH--IPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDAAN   80 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC--CcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccC
Confidence            478899999999999999999998  667876443 22                  1111223333555555542   35


Q ss_pred             eEEEeCCCCCHHHHHHHHHh-CCCCC-eEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhh
Q 006654           80 SVFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK  148 (636)
Q Consensus        80 ~VIID~tn~~~~~R~~l~~l-~~~g~-~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~f  148 (636)
                      +||||+++.+..+...+..+ ...+. ...+++|++|.+++.+|+..|.+.      ...++.+++....|
T Consensus        81 g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~------dd~~~~~~~r~~~y  145 (184)
T PRK02496         81 GWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGRK------DDTEEVIRRRLEVY  145 (184)
T ss_pred             CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCCC------CCCHHHHHHHHHHH
Confidence            69999999999888777665 44433 236789999999999999999652      22445555544444

>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.26  E-value=1.3e-10  Score=109.25  Aligned_cols=131  Identities=22%  Similarity=0.283  Sum_probs=103.0

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC---------C------CCCcHH-HHHHHHHHHHhCCCe
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------G------KSGTKV-QCLTSASSALKKGKS   80 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~---------~------~~~~~~-~~~~~~~~~L~~G~~   80 (636)
                      ++-+.+|+++|++||||||+++.|.++++  +..++.|++..         +      .+-.|- .+...++.++..|..
T Consensus         9 ~~~k~~i~vmGvsGsGKSTigk~L~~~l~--~~F~dgDd~Hp~~NveKM~~GipLnD~DR~pWL~~i~~~~~~~l~~~q~   86 (191)
T KOG3354|consen    9 GPFKYVIVVMGVSGSGKSTIGKALSEELG--LKFIDGDDLHPPANVEKMTQGIPLNDDDRWPWLKKIAVELRKALASGQG   86 (191)
T ss_pred             CCCceeEEEEecCCCChhhHHHHHHHHhC--CcccccccCCCHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHhhcCCe
Confidence            34566899999999999999999999999  55589888842         1      111222 233566677778999


Q ss_pred             EEEeCCCCCHHHHHHHHHh-C-----C-CCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCc
Q 006654           81 VFLDRCNLEREQRTDFVKL-G-----G-PEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKL  153 (636)
Q Consensus        81 VIID~tn~~~~~R~~l~~l-~-----~-~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~  153 (636)
                      ||+-+..+.+..|.-+..- +     . ...++++|++..+.+++.+|+..|..|      -.|.+.+.+|.+.+|+|..
T Consensus        87 vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gH------FMp~~lleSQf~~LE~p~~  160 (191)
T KOG3354|consen   87 VVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGH------FMPADLLESQFATLEAPDA  160 (191)
T ss_pred             EEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcccc------cCCHHHHHHHHHhccCCCC
Confidence            9999988888888766552 2     1 224678999999999999999999997      7899999999999999997


Q ss_pred             cC
Q 006654          154 SE  155 (636)
Q Consensus       154 ~E  155 (636)
                      .|
T Consensus       161 ~e  162 (191)
T KOG3354|consen  161 DE  162 (191)
T ss_pred             Cc
Confidence            55

>cd02906 Macro_1 Macro domain, Unknown family 1

Probab=99.26  E-value=1.5e-12  Score=123.66  Aligned_cols=108  Identities=12%  Similarity=0.015  Sum_probs=87.7

Q ss_pred             CccCCCCCchhhHHHHHHHHhh----cCCCCCCCCCCcccCCCCCCcccccccccccCcceecccccccc--hhhcccCC
Q 006654          188 GSFGQKNPDAKIQLGIMKFLKK----VDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAG--EEVKGTEN  261 (636)
Q Consensus       188 gc~~~~~~~~~v~~~i~k~l~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~  261 (636)
                      |+.+. .++.++|.+|+..+++    .+...++|.- .        .|...++.|.++-|.+.+.|....  ...++.|.
T Consensus        34 ggv~~-aI~~~aG~~l~~e~~~~~~~~g~~~~~G~a-~--------~T~~~~L~~k~VIHavgP~~~~~~~~~~~~~~L~  103 (147)
T cd02906          34 RCIDN-IIHTFAGPQLRQACFELMTKQGREEPTGQA-K--------ITPGYNLPAKYVIHTVGPIIERGLTTPIHRDLLA  103 (147)
T ss_pred             CcHHH-HHHHHhCHHHHHHHHHHHHhcCCCCCCCeE-E--------EEeCCCCCCCEEEEECCCcccCCCCCccHHHHHH
Confidence            56767 8999999999976544    3444566641 1        355677888899998888876532  34577899


Q ss_pred             hhhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHH
Q 006654          262 PEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVE  305 (636)
Q Consensus       262 ~~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~  305 (636)
                      .||.+||.++.+++++|||||+||||+||||.++||+|++++|+
T Consensus       104 ~~~~~~L~~a~~~~~~sIA~P~i~tG~~g~p~~~aA~i~~~~v~  147 (147)
T cd02906         104 KCYLSCLDLAEKAGLKSIAFCCISTGLFGFPQEEAAQIAIKTVL  147 (147)
T ss_pred             HHHHHHHHHHHHcCCCEEEECcccccCCCCCHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999984

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a macro domain, either as a stand-alone domain or in addition to a C-terminal SIR2 (silent information regulator 2) domain.

>PRK14526 adenylate kinase; Provisional

Probab=99.25  E-value=2.2e-10  Score=115.18  Aligned_cols=171  Identities=13%  Similarity=0.183  Sum_probs=110.5

Q ss_pred             EEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-cCC------------------CCCcHHHHHHHHHHHHhC---CCe
Q 006654           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NKG------------------KSGTKVQCLTSASSALKK---GKS   80 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r~~------------------~~~~~~~~~~~~~~~L~~---G~~   80 (636)
                      |+|+|+|||||||+|+.|++.++  +.+++.+.+ ++.                  ...+.......+.+.|..   ..+
T Consensus         3 i~l~G~pGsGKsT~a~~La~~~~--~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~~~g   80 (211)
T PRK14526          3 LVFLGPPGSGKGTIAKILSNELN--YYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKNNDN   80 (211)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC--CceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccccCc
Confidence            77899999999999999999988  667875444 322                  111222334556666643   457


Q ss_pred             EEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCccE
Q 006654           81 VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSR  159 (636)
Q Consensus        81 VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd~  159 (636)
                      ||||+++++..|...|... ..    ..+++|++|.+++.+|+..|...+..         ...++..|.+|.. ++..+
T Consensus        81 ~ilDGfPR~~~Qa~~l~~~~~~----~~vi~l~~~~~~~~~Rl~~R~~~~~~---------g~~y~~~~~pp~~-~~~~~  146 (211)
T PRK14526         81 FILDGFPRNINQAKALDKFLPN----IKIINFLIDEELLIKRLSGRRICKSC---------NNIFNIYTLPTKE-KGICD  146 (211)
T ss_pred             EEEECCCCCHHHHHHHHHhcCC----CEEEEEECCHHHHHHHHHCCCccccc---------CCccccccCCCCc-cCcCC
Confidence            9999999999999888665 32    24678899999999999999875432         2223334555543 22111


Q ss_pred             ----EEEeCChhHHHHHHHH---hc-cCCCC-c---ccC--CCccCCCCCchhhHHHHHHHHhhc
Q 006654          160 ----ITLCQNENDVQAALDT---YS-GLGPL-D---TLP--HGSFGQKNPDAKIQLGIMKFLKKV  210 (636)
Q Consensus       160 ----Viii~~~~~vdaiv~~---~~-~Lgpf-d---~~p--hgc~~~~~~~~~v~~~i~k~l~~~  210 (636)
                          -...+.++..+.+.++   |+ ...|. +   ..+  +...++ .+...|+..|.+.|++.
T Consensus       147 ~~~~~l~~R~DD~~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~-~~~~~V~~~i~~~l~~~  210 (211)
T PRK14526        147 VCKGDLYQRKDDKEESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDAS-KDIDEVKKKLIEIISKK  210 (211)
T ss_pred             CCCCeeeccCCCCHHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECC-CCHHHHHHHHHHHHccc
Confidence                1234555556666554   33 33333 1   112  445555 67788899999998763

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=99.23  E-value=4.5e-11  Score=118.72  Aligned_cols=114  Identities=18%  Similarity=0.252  Sum_probs=80.5

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHc-CCCeEEeehhhhcCCCCCc---------------H----HHHHHHHHHHH
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSS-ARPWARICQDTINKGKSGT---------------K----VQCLTSASSAL   75 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~-~~~~~~Is~D~ir~~~~~~---------------~----~~~~~~~~~~L   75 (636)
                      ....|.+++|.|+|||||||++..+...+ ...+++|+.|.++......               .    ......+..++
T Consensus        11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a~   90 (199)
T PF06414_consen   11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIEYAI   90 (199)
T ss_dssp             --SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            44789999999999999999999999987 4468899999997542210               0    11225566777


Q ss_pred             hCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccccc
Q 006654           76 KKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHE  129 (636)
Q Consensus        76 ~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~  129 (636)
                      ..+.++|+|++.........+++. ++.||.+.++++.+|.++.+.|+..|....
T Consensus        91 ~~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv~~R~~~~  145 (199)
T PF06414_consen   91 ENRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIERVRQRYEEG  145 (199)
T ss_dssp             HCT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHHHHHHHHHHH
T ss_pred             HcCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHHHHHHHHHcc
Confidence            889999999998888777777777 889999999999999999999999997654

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=99.22  E-value=1.6e-10  Score=113.14  Aligned_cols=145  Identities=18%  Similarity=0.272  Sum_probs=95.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-cCCCCC------------------cHHHHHHHHHHHHhCC---C
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NKGKSG------------------TKVQCLTSASSALKKG---K   79 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r~~~~~------------------~~~~~~~~~~~~L~~G---~   79 (636)
                      .|+++|+|||||||+|++|++.++  ..||+++++ +.+...                  +.......+...+...   .
T Consensus         2 riiilG~pGaGK~T~A~~La~~~~--i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~   79 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKLG--LPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKA   79 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC--CcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccC
Confidence            478999999999999999999987  889997555 322111                  1222224455555443   2


Q ss_pred             eEEEeCCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhh--cCCCccC
Q 006654           80 SVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK--ELPKLSE  155 (636)
Q Consensus        80 ~VIID~tn~~~~~R~~l~~l-~~~g~~v-~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~f--e~P~~~E  155 (636)
                      .||+|+++.+..+...+.++ .+.+.+. .++.++++.+.+..|...|..    +.++.++.+.+|+....  ..|.. +
T Consensus        80 ~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~----r~dd~~~~~~~R~~~y~~~~~pli-~  154 (178)
T COG0563          80 GFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV----REDDNEETVKKRLKVYHEQTAPLI-E  154 (178)
T ss_pred             eEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc----cccCCHHHHHHHHHHHHhcccchh-h
Confidence            79999999999999888877 6666444 788999999999999999975    22345555555544322  23332 1


Q ss_pred             CccEEEEeCChhHHHHHHHH
Q 006654          156 GFSRITLCQNENDVQAALDT  175 (636)
Q Consensus       156 gfd~Viii~~~~~vdaiv~~  175 (636)
                      -+.  ..++...+++.+.+.
T Consensus       155 ~y~--~~id~~~~i~~v~~~  172 (178)
T COG0563         155 YYS--VTIDGSGEIEEVLAD  172 (178)
T ss_pred             hhe--eeccCCCCHHHHHHH
Confidence            111  334455555655543

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=99.21  E-value=3.7e-10  Score=109.92  Aligned_cols=122  Identities=20%  Similarity=0.318  Sum_probs=80.2

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-cCC------------------CCCcHHHHHHH----HHHHHh
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NKG------------------KSGTKVQCLTS----ASSALK   76 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r~~------------------~~~~~~~~~~~----~~~~L~   76 (636)
                      ..+|+++|+|||||||+|+.|++.++  +.+++.+++ +..                  ...+...+...    +...+.
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~g--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   80 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKYG--FTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALG   80 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhC--CcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccC
Confidence            45789999999999999999999998  677877443 221                  01111122222    333345


Q ss_pred             CCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHh
Q 006654           77 KGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ  146 (636)
Q Consensus        77 ~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~  146 (636)
                      .+.+||+|+++.+..+...+...  ......+++|++|.+++.+|+..|..... +.+...+.+.+++..
T Consensus        81 ~~~~~i~dg~~~~~~q~~~~~~~--~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~-r~d~~~~~~~~r~~~  147 (188)
T TIGR01360        81 TSKGFLIDGYPREVKQGEEFERR--IGPPTLVLYFDCSEDTMVKRLLKRAETSG-RVDDNEKTIKKRLET  147 (188)
T ss_pred             cCCeEEEeCCCCCHHHHHHHHHc--CCCCCEEEEEECCHHHHHHHHHcccccCC-CCCCCHHHHHHHHHH
Confidence            67889999998887666655333  12233589999999999999999975322 333444444455543

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PTZ00088 adenylate kinase 1; Provisional

Probab=99.21  E-value=2.9e-10  Score=115.75  Aligned_cols=106  Identities=21%  Similarity=0.235  Sum_probs=79.1

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc-CC------------------CCCcHHHHHHHHHHHHhC--
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-KG------------------KSGTKVQCLTSASSALKK--   77 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir-~~------------------~~~~~~~~~~~~~~~L~~--   77 (636)
                      .|..|+|+|+|||||||+|+.|++.++  +.+|+.|++. +.                  ...+.+.+...+.+.+.+  
T Consensus         5 ~~mrIvl~G~PGsGK~T~a~~La~~~g--~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~   82 (229)
T PTZ00088          5 GPLKIVLFGAPGVGKGTFAEILSKKEN--LKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVT   82 (229)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhC--CcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhc
Confidence            345589999999999999999999998  7788876653 21                  111233444555566543  


Q ss_pred             ---CCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccccc
Q 006654           78 ---GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHE  129 (636)
Q Consensus        78 ---G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~  129 (636)
                         +.+||+|+++.+..|+..+....   ..-.+++|++|.+++.+|+..|..++
T Consensus        83 ~~~~~g~iLDGfPRt~~Qa~~l~~~~---~~~~vi~l~~~~~~~~~Rl~~Rr~~~  134 (229)
T PTZ00088         83 DDCFKGFILDGFPRNLKQCKELGKIT---NIDLFVNIYLPRNILIKKLLGRRICN  134 (229)
T ss_pred             cccCceEEEecCCCCHHHHHHHHhcC---CCCEEEEEeCCHHHHHHHHHcCcCCC
Confidence               46799999999999998875442   12247899999999999999997654

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.21  E-value=1.8e-10  Score=107.94  Aligned_cols=134  Identities=22%  Similarity=0.231  Sum_probs=98.1

Q ss_pred             EccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC---------CC------CCcHHHHH-HHHHHHHhCCCeEEEeCCCCC
Q 006654           26 VGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------GK------SGTKVQCL-TSASSALKKGKSVFLDRCNLE   89 (636)
Q Consensus        26 vG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~---------~~------~~~~~~~~-~~~~~~L~~G~~VIID~tn~~   89 (636)
                      +|..||||||+++.|+++++  +..|+.|++..         +.      +-.|-+.+ ..+......++.+||-+..+.
T Consensus         1 MGVsG~GKStvg~~lA~~lg--~~fidGDdlHp~aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~vi~CSALK   78 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLG--AKFIDGDDLHPPANIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHVVIACSALK   78 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcC--CceecccccCCHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCceEEecHHHH
Confidence            49999999999999999999  56699888742         11      11232222 333333455666788887888


Q ss_pred             HHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCccEEEEeCChhHH
Q 006654           90 REQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDV  169 (636)
Q Consensus        90 ~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd~Viii~~~~~v  169 (636)
                      +.+|..+   +.....+.+|||+.+.+++.+|...|..|      -.+...+++|...+|+|...|   +++.++....+
T Consensus        79 r~YRD~L---R~~~~~~~Fv~L~g~~~~i~~Rm~~R~gH------FM~~~ll~SQfa~LE~P~~de---~vi~idi~~~~  146 (161)
T COG3265          79 RSYRDLL---REANPGLRFVYLDGDFDLILERMKARKGH------FMPASLLDSQFATLEEPGADE---DVLTIDIDQPP  146 (161)
T ss_pred             HHHHHHH---hccCCCeEEEEecCCHHHHHHHHHhcccC------CCCHHHHHHHHHHhcCCCCCC---CEEEeeCCCCH
Confidence            8888766   44444578999999999999999999998      789999999999999999766   34444443344


Q ss_pred             HHHH
Q 006654          170 QAAL  173 (636)
Q Consensus       170 daiv  173 (636)
                      +.++
T Consensus       147 e~vv  150 (161)
T COG3265         147 EEVV  150 (161)
T ss_pred             HHHH
Confidence            4444

>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family

Probab=99.18  E-value=1.3e-11  Score=119.26  Aligned_cols=112  Identities=10%  Similarity=0.102  Sum_probs=92.4

Q ss_pred             cCCCCCchhhHHHHHHHHhhcCCCCCCCCCCcccCCCCCCcccccccccccCcceecccccccchhhcccCChhhhhhhc
Q 006654          190 FGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQ  269 (636)
Q Consensus       190 ~~~~~~~~~v~~~i~k~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~l~  269 (636)
                      .+. ++....|.+|++.+++.+.. .+|.- .        .|...++.|.+.-|++.|.|........+.|..++.+||.
T Consensus        31 v~~-ai~~~~G~~l~~e~~~~~~~-~~G~~-v--------~T~~~~l~~~~IiH~v~P~~~~~~~~~~~~L~~~~~~~L~   99 (165)
T cd02908          31 VDG-AIHRAAGPELLEECRELRGC-PTGEA-V--------ITSGYNLPAKYVIHTVGPVWRGGQHNEAELLASCYRNSLE   99 (165)
T ss_pred             HHH-HHHHHhCHHHHHHHHHhCCC-CCCCE-E--------EeeCCCCCCCEEEEEcCCcccCCCCcHHHHHHHHHHHHHH
Confidence            444 78999999999999876654 44531 1        2455677788999988888875434557788999999999


Q ss_pred             ccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcC
Q 006654          270 NGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG  312 (636)
Q Consensus       270 ~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~  312 (636)
                      .+.+.+++|||||+||||+||||.++||+++++++++|+++..
T Consensus       100 ~a~~~~~~sIa~P~igtG~~g~p~~~~a~~~~~ai~~fl~~~~  142 (165)
T cd02908         100 LARENGLRSIAFPAISTGVYGYPLDEAARIALKTVREFLEEHD  142 (165)
T ss_pred             HHHHcCCCEEEECceecCCCCCCHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999998743

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=99.16  E-value=7e-10  Score=108.47  Aligned_cols=135  Identities=20%  Similarity=0.202  Sum_probs=92.9

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC---------CCC------cHHHHH-HHHHHHHhC-CCeEEE
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG---------KSG------TKVQCL-TSASSALKK-GKSVFL   83 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~---------~~~------~~~~~~-~~~~~~L~~-G~~VII   83 (636)
                      .+++++|++||||||+++.++..++  ..+++.|.+...         ...      .+.... ..+...+.. ..++|+
T Consensus         4 e~i~l~G~sGsGKSTl~~~la~~l~--~~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv   81 (176)
T PRK09825          4 ESYILMGVSGSGKSLIGSKIAALFS--AKFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYSLYKKNETGFIV   81 (176)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcC--CEEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHHHHhcCCCEEEE
Confidence            5789999999999999999999887  457887764321         000      121222 222222232 345666


Q ss_pred             eCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCccEEEEe
Q 006654           84 DRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLC  163 (636)
Q Consensus        84 D~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd~Viii  163 (636)
                       .+++....|..+   ++.+..+.+|+|++|.+++.+|+..|..+      ..+.+++.+|...+++|...|.  .++.+
T Consensus        82 -~s~~~~~~R~~~---r~~~~~~~~v~l~a~~~~l~~Rl~~R~~~------~~~~~vl~~Q~~~~e~~~~~e~--~~~~~  149 (176)
T PRK09825         82 -CSSLKKQYRDIL---RKSSPNVHFLWLDGDYETILARMQRRAGH------FMPPDLLQSQFDALERPCADEH--DIARI  149 (176)
T ss_pred             -EEecCHHHHHHH---HhhCCCEEEEEEeCCHHHHHHHHhcccCC------CCCHHHHHHHHHHcCCCCCCcC--CeEEE
Confidence             667877777655   55566788999999999999999999764      4688999999999998876553  24444


Q ss_pred             CChhHH
Q 006654          164 QNENDV  169 (636)
Q Consensus       164 ~~~~~v  169 (636)
                      +....+
T Consensus       150 d~~~~~  155 (176)
T PRK09825        150 DVNHDI  155 (176)
T ss_pred             ECCCCH
Confidence            444333

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=99.16  E-value=3.9e-10  Score=106.84  Aligned_cols=98  Identities=19%  Similarity=0.304  Sum_probs=72.5

Q ss_pred             EEccCCCcHHHHHHHHHHHcCCCeEEeehhh-hc------------------CCCCCcHHHHHHHHHHHHhC---CCeEE
Q 006654           25 MVGAPGSGKSTFCEHVMRSSARPWARICQDT-IN------------------KGKSGTKVQCLTSASSALKK---GKSVF   82 (636)
Q Consensus        25 LvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~-ir------------------~~~~~~~~~~~~~~~~~L~~---G~~VI   82 (636)
                      ++|+|||||||+|+.|+++++  +.||+..+ ++                  ++...+.+.+...+...|..   .+++|
T Consensus         1 i~G~PgsGK~t~~~~la~~~~--~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g~i   78 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYG--LVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRGFI   78 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHT--SEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTEEE
T ss_pred             CcCCCCCChHHHHHHHHHhcC--cceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccceee
Confidence            689999999999999999998  88998633 33                  22222344455666666654   47899


Q ss_pred             EeCCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHh
Q 006654           83 LDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVK  124 (636)
Q Consensus        83 ID~tn~~~~~R~~l~~l-~~~g~~v-~vV~Ld~p~e~l~~R~~~  124 (636)
                      ||+++.+..+...|..+ ...+..+ .+|+|++|.+.+.+|+..
T Consensus        79 ldGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~  122 (151)
T PF00406_consen   79 LDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ  122 (151)
T ss_dssp             EESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred             eeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc
Confidence            99999999999998875 4344444 789999999999999887

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=99.16  E-value=6.1e-10  Score=107.46  Aligned_cols=134  Identities=19%  Similarity=0.189  Sum_probs=89.4

Q ss_pred             EccCCCcHHHHHHHHHHHcCCCeEEeehhhhc------CCCCC---------cHHHHH-HHHHHHHhC-CCeEEEeCCCC
Q 006654           26 VGAPGSGKSTFCEHVMRSSARPWARICQDTIN------KGKSG---------TKVQCL-TSASSALKK-GKSVFLDRCNL   88 (636)
Q Consensus        26 vG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir------~~~~~---------~~~~~~-~~~~~~L~~-G~~VIID~tn~   88 (636)
                      +|+|||||||+++.|+..++  ..+++.|.+.      ....+         .+.... ..+...+.. |..||+ .+++
T Consensus         1 ~G~sGsGKSTla~~la~~l~--~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv-~s~~   77 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQLH--AAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIV-CSAL   77 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHhC--CeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHHHHHHcCCceEEE-Eecc
Confidence            59999999999999999998  5678887742      11111         111111 222222333 444555 7788


Q ss_pred             CHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCccEEEEeCChhH
Q 006654           89 EREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNEND  168 (636)
Q Consensus        89 ~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd~Viii~~~~~  168 (636)
                      ....|..+   ++.+.++.+|++++|.++|.+|+..|..+      ..+.+++..|...+++|...|.  .++.++....
T Consensus        78 ~~~~r~~~---~~~~~~~~~v~l~a~~~~l~~Rl~~R~~~------~a~~~vl~~Q~~~~ep~~~~e~--~~~~id~~~~  146 (163)
T PRK11545         78 KKHYRDLL---REGNPNLSFIYLKGDFDVIESRLKARKGH------FFKTQMLVTQFETLQEPGADET--DVLVVDIDQP  146 (163)
T ss_pred             hHHHHHHH---HccCCCEEEEEEECCHHHHHHHHHhccCC------CCCHHHHHHHHHHcCCCCCCCC--CEEEEeCCCC
Confidence            77777555   55667789999999999999999999764      2377889999999998876552  3445554444


Q ss_pred             HHHHH
Q 006654          169 VQAAL  173 (636)
Q Consensus       169 vdaiv  173 (636)
                      ++.++
T Consensus       147 ~~~~~  151 (163)
T PRK11545        147 LEGVV  151 (163)
T ss_pred             HHHHH
Confidence            33333

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=99.15  E-value=2.7e-10  Score=108.27  Aligned_cols=101  Identities=27%  Similarity=0.351  Sum_probs=77.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCC---CC----cHHH----HHHHHHHHHhCCCeEEEeCCC
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGK---SG----TKVQ----CLTSASSALKKGKSVFLDRCN   87 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~---~~----~~~~----~~~~~~~~L~~G~~VIID~tn   87 (636)
                      +|+|+|+|||||||+|+.|++.+   +..+.+++.|.++...   .+    ....    ....+...++.|..||+|.++
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~~VIid~~~   80 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFSREDREENIRRIAEVAKLLADAGLIVIAAFIS   80 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCEEEEccCC
Confidence            47899999999999999999887   4446678888886421   11    1111    123344456789999999999


Q ss_pred             CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHh
Q 006654           88 LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVK  124 (636)
Q Consensus        88 ~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~  124 (636)
                      .....|..+..+ .  +..+.+++|++|.++|.+|..+
T Consensus        81 ~~~~~R~~~~~l~~--~~~~~~i~l~~~~e~~~~R~~~  116 (149)
T cd02027          81 PYREDREAARKIIG--GGDFLEVFVDTPLEVCEQRDPK  116 (149)
T ss_pred             CCHHHHHHHHHhcC--CCCEEEEEEeCCHHHHHHhCch
Confidence            999999888887 5  6788899999999999999654

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]

Probab=99.12  E-value=6.7e-14  Score=147.40  Aligned_cols=413  Identities=23%  Similarity=0.185  Sum_probs=249.1

Q ss_pred             eCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCccEEEEe
Q 006654           84 DRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLC  163 (636)
Q Consensus        84 D~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd~Viii  163 (636)
                      |.++..+. +..++.......+++..+...+.+.+..+...|..|.......-......-|+..++.+....++..+.+.
T Consensus         3 ~~~~~~~~-~~~~i~~g~~~~~~~~~~~~~~~q~~ds~~~~~~v~~~~~~~~~w~~~~ng~L~i~~~~~v~~~~K~i~FD   81 (422)
T KOG2134|consen    3 DRERLLRE-DSEFISYGLHEFEVHKKVTPEPAQSKDSDLVGTLVHLPQKIGGRWSSTENGMLQIFTLPKVNGGSKIIMFD   81 (422)
T ss_pred             cccccccc-chhHHhcCCcccceeecccCCccccccCcccccccccccccCCCcccccCcceEEeeccccCCCcceEEEe
Confidence            44555555 55665553344455666667788888888888775543333334445556667777888877787887776


Q ss_pred             CChhHHHHHHHHhccCCCCcccCCCccCCCCCchhhHHHHHHHHhhcCCCCCCCCCCcccCCCCCCcccccccccccCcc
Q 006654          164 QNENDVQAALDTYSGLGPLDTLPHGSFGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQE  243 (636)
Q Consensus       164 ~~~~~vdaiv~~~~~Lgpfd~~phgc~~~~~~~~~v~~~i~k~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (636)
                      -+...+++....+-.++|-|+..-.|....+..+..+.+|+.|+........-+.   -..+..                
T Consensus        82 ~dgtlI~t~sg~vf~~~~~dw~~l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~---~~~~~f----------------  142 (422)
T KOG2134|consen   82 YDGTLIDTKSGKVFPKGSMDWRILFPEVPSKLKTLYQDGIKLFIFTNQNGIARGK---LELEEF----------------  142 (422)
T ss_pred             cCCceeecCCcceeeccCccceeeccccchhhhhhccCCeEEEEEecccccccCc---chHHHH----------------
Confidence            6655666555555567888777655665556777777888888866444333222   000000                


Q ss_pred             eecccccccchhhc---ccCChhhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCCeEEE-Ee
Q 006654          244 ITSLLSDAAGEEVK---GTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLV-LV  319 (636)
Q Consensus       244 ~~~~~~~~~~~~~~---~~l~~~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~~~~~v-~~  319 (636)
                               +...+   ..+.+-..    +-.+..--..++|.+|.-.|.+-...++..|.+-+..|+-+...-... ..
T Consensus       143 ---------~~Ki~~i~anl~vPi~----~~~A~~~~~yRKP~tGMwe~~~~~~nd~~~Isek~s~fvgdaagr~~~~~~  209 (422)
T KOG2134|consen  143 ---------KKKIKAIVANLGVPIQ----LLAAIIKGKYRKPSTGMWEFLKRLENDSVEISEKASIFVGDAAGRPLDALR  209 (422)
T ss_pred             ---------HHHHHHHHHhcCCceE----EeeeccCCcccCcchhHHHHHHHHhhccceeeechhhhhhhhccCcccccc
Confidence                     00000   00111100    000111124566666555555555555555555555555543221111 22


Q ss_pred             ccCcchhhhhhhhHHhhhhhcCCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCCh--hhHHHHHhhcHHHHHHH
Q 006654          320 DLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGG--VNAAIFSAAGPALEVAT  397 (636)
Q Consensus       320 ~~~~~s~~Ls~vs~~~~~~~~~~~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggG--Va~AI~~aaG~~l~~e~  397 (636)
                      +....+.....+...+-.+-.....++...++++ +...+...+.+|+|++|+.|.+.++|  |..+++.++|+....+.
T Consensus       210 ~kkd~S~~D~~FAaN~gvkF~tPeefF~g~~~~~-~~~~~fdp~n~i~~~t~~~~~~~~~~eiV~~vgfp~sGks~f~a~  288 (422)
T KOG2134|consen  210 RKKDHSSADRKFAANAGVKFKTPEEFFLGVGVVT-WNSPGFDPKNVISRATSLCLKLDGHGEIVVAVGFPGSGKSTFAAK  288 (422)
T ss_pred             CcccccHHHHHHHHhcCCccCCHHHHhccccccc-cCCCCCCchhHHhhhcchhcccCCCCcEEEEEecCCCCcchhhhh
Confidence            2333333332222222122223445677788888 76677777899999999999988888  99999999999988876


Q ss_pred             HHhcCCCCCCcEEEecCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhHHHhhccccCC
Q 006654          398 AERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKL  477 (636)
Q Consensus       398 ~~~~~~~~~G~avvT~l~~~~~~~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~siaf~~~~~  477 (636)
                      .=......++++.+.+.|++|++.+....++++|+|+   ++.+|+-..++|--.+..++.+|-+||++..|...-+-..
T Consensus       289 ~~~~~~y~~vn~d~lg~~~~C~~~~~e~l~~~~sVvi---dnt~pd~~sr~~~~~~a~e~~~p~rcf~~~~s~eq~~hn~  365 (422)
T KOG2134|consen  289 RVVPNGYKIVNADTLGTPQNCLLANAEALKHGKSVVI---DNTNPDAESRKYYLDCATEREIPIRCFEMNSSVEQAQHNN  365 (422)
T ss_pred             hcccCceeEeecccCCCchhhHHHHHHHhhcccEEee---CCCCcchHHHHHHhhhHHHhCccceeeeeccHHHhhhccc
Confidence            6555666777887777888899999899999999998   3334443333333445677788888887776665532221


Q ss_pred             CCCCCcCcccCCCccCCCCccccCCcccCCCccccCCCccccccccccccccccccccccccccccccccccCcccccch
Q 006654          478 SKGCNEDIRLEPSVSQDHSEDVHGNYISTGDKIKRDGGHEYEQSKKCKTQNEVGTDINLSRAANLSADNEKIGVSTSKAW  557 (636)
Q Consensus       478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  557 (636)
                      .          ..++||       ++-+.+.+|    ...++|+|++|++++.+++.+...+-.   +....+..+.|.|
T Consensus       366 ~----------fR~~~~-------~~~~~~~dm----~~~~~k~kf~~ptl~egft~i~ev~f~---~~~~~~ekl~k~~  421 (422)
T KOG2134|consen  366 R----------FRELSD-------SVKDSGSDM----VFNSEKSKFQKPTLDEGFTNILEVPFK---DTRESGEKLYKMW  421 (422)
T ss_pred             c----------chhhcc-------chhcccccc----eeehhhccccCchHhhhhhhhhccchh---hhhhhhhhHhhcc
Confidence            1          111222       111223344    678999999999999999988887755   3555566666766

>PRK06217 hypothetical protein; Validated

Probab=99.11  E-value=1e-09  Score=107.48  Aligned_cols=99  Identities=17%  Similarity=0.130  Sum_probs=71.3

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCC-------CCcHHHHHHHHHHHHhCCCeEEEeCCCCCHHHH
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK-------SGTKVQCLTSASSALKKGKSVFLDRCNLEREQR   93 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~-------~~~~~~~~~~~~~~L~~G~~VIID~tn~~~~~R   93 (636)
                      ..|+|+|.|||||||+|++|++.++  +.+++.|.+....       ..+.+.....+.+.+..+..+|||++... . +
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~l~--~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~G~~~~-~-~   77 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAERLD--IPHLDTDDYFWLPTDPPFTTKRPPEERLRLLLEDLRPREGWVLSGSALG-W-G   77 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC--CcEEEcCceeeccCCCCccccCCHHHHHHHHHHHHhcCCCEEEEccHHH-H-H
Confidence            3589999999999999999999998  5578888775321       22344445666677777788999985432 1 1


Q ss_pred             HHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654           94 TDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (636)
Q Consensus        94 ~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~  128 (636)
                      ..+.  ...+.   +|+|++|.++|.+|+..|...
T Consensus        78 ~~~~--~~~d~---~i~Ld~~~~~~~~Rl~~R~~~  107 (183)
T PRK06217         78 DPLE--PLFDL---VVFLTIPPELRLERLRLREFQ  107 (183)
T ss_pred             HHHH--hhCCE---EEEEECCHHHHHHHHHcCccc
Confidence            1111  33343   789999999999999999753

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=99.09  E-value=1.9e-09  Score=103.09  Aligned_cols=139  Identities=17%  Similarity=0.277  Sum_probs=100.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHH--hCCCeEEEeCCCCCHHHHHHHHHh
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSAL--KKGKSVFLDRCNLEREQRTDFVKL   99 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L--~~G~~VIID~tn~~~~~R~~l~~l   99 (636)
                      +|+-++.+||||||+|..|..-+|. |.|+..|.+...   ....+.+.+.+.|  .....||+|..|.....|+.+.+.
T Consensus         1 vlvPIAtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~k---~~~~f~~~~l~~L~~~~~~vViaDRNNh~~reR~ql~~~   76 (168)
T PF08303_consen    1 VLVPIATIGCGKTTVALALSNLFGE-WGHVQNDNITGK---RKPKFIKAVLELLAKDTHPVVIADRNNHQKRERKQLFED   76 (168)
T ss_pred             CEeeecCCCcCHHHHHHHHHHHcCC-CCccccCCCCCC---CHHHHHHHHHHHHhhCCCCEEEEeCCCchHHHHHHHHHH
Confidence            4678999999999999999999874 889999999433   4555677888888  555679999999999999987766


Q ss_pred             -CC--C-------CCeEEEEEEeCC--H----HHHHHHHHhcccccCC-CCCC----ChHHHHHHHHhhhcCCCc----c
Q 006654          100 -GG--P-------EVDVHAVVLDLP--A----KLCISRSVKRIEHEGN-LQGG----KAAAVVNRMLQKKELPKL----S  154 (636)
Q Consensus       100 -~~--~-------g~~v~vV~Ld~p--~----e~l~~R~~~R~~~~~~-~~~~----vp~evi~rm~~~fe~P~~----~  154 (636)
                       ..  .       +..+.++.+..+  .    +++.+|+.+|+..... +.+.    ....+++.+.++|++...    -
T Consensus        77 ~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~rfep~~~~~~pD  156 (168)
T PF08303_consen   77 VSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIKRFEPVDPDREPD  156 (168)
T ss_pred             HHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHHhcCCCCCCCCCc
Confidence             32  2       333333333322  2    5789999999964333 3322    235688888999987554    4


Q ss_pred             CCccEEEEeC
Q 006654          155 EGFSRITLCQ  164 (636)
Q Consensus       155 Egfd~Viii~  164 (636)
                      .+|+.|+.++
T Consensus       157 ~~FD~vI~L~  166 (168)
T PF08303_consen  157 SGFDHVIDLD  166 (168)
T ss_pred             cccCEeEeCc
Confidence            5788887654

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]

Probab=99.07  E-value=6.9e-10  Score=112.04  Aligned_cols=175  Identities=19%  Similarity=0.265  Sum_probs=122.5

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh-hhhcCC------------------CCCcHHHHHHHHHHHHhCC-
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINKG------------------KSGTKVQCLTSASSALKKG-   78 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~-D~ir~~------------------~~~~~~~~~~~~~~~L~~G-   78 (636)
                      ++.-++++|+|||||+|+|+.+.+.++  .+||.+ |.+|+.                  ...+.+.+..++...|..+ 
T Consensus        14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~--~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~   91 (235)
T KOG3078|consen   14 KGVRAVLLGAPGSGKGTQAPRLTKNFG--VIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPR   91 (235)
T ss_pred             cceEEEEEeCCCCCCCccCHHHHHhcC--CccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhccccc
Confidence            567789999999999999999999998  667775 555531                  2223444455555567666 


Q ss_pred             --CeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccC
Q 006654           79 --KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSE  155 (636)
Q Consensus        79 --~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~E  155 (636)
                        +++|+|+++.+..+...+.+. ...+   .++.|.+|++.+.+|+..|..|+..         .+.++..|.+|.. .
T Consensus        92 ~~~~~ildg~Prt~~qa~~l~~~~~~~d---~Vi~l~vp~~~L~~ri~~r~ihp~s---------G~~Yh~~~~pPk~-~  158 (235)
T KOG3078|consen   92 CQKGFILDGFPRTVQQAEELLDRIAQID---LVINLKVPEEVLVDRITGRRIHPAS---------GRVYHLEFNPPKV-P  158 (235)
T ss_pred             cccccccCCCCcchHHHHHHHHccCCcc---eEEEecCCHHHHHHHHhcccccCcc---------cceecccccCCcc-c
Confidence              679999999999888776555 4444   4889999999999999999998754         5666677878774 4


Q ss_pred             CccEEE----EeCChhHHHHHHHH---hc-cCCCC-c---ccC--CCccCCCCCchhhHHHHHHHHhhc
Q 006654          156 GFSRIT----LCQNENDVQAALDT---YS-GLGPL-D---TLP--HGSFGQKNPDAKIQLGIMKFLKKV  210 (636)
Q Consensus       156 gfd~Vi----ii~~~~~vdaiv~~---~~-~Lgpf-d---~~p--hgc~~~~~~~~~v~~~i~k~l~~~  210 (636)
                      +.++++    +.+.++..+++..+   |. ...|. +   ..+  ....+.  ....+|..++.+|.+.
T Consensus       159 ~~dDitgepL~qr~dD~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~~~~~~--~~~~v~~~v~~~l~~~  225 (235)
T KOG3078|consen  159 GKDDITGEPLIQREDDKPEVVKKRLKAYKEQTKPVLEYYKKKGVLIEFSGE--KPEEVFPNVYAFLSKK  225 (235)
T ss_pred             cccccccChhhcCccccHHHHHHHHHHHhhcchHHHHHHHhcCeeeeccCc--chhHhHHHHHHHHHhh
Confidence            667765    44555555555544   44 33443 2   222  122222  3688999999999874

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.06  E-value=1.8e-09  Score=103.45  Aligned_cols=103  Identities=22%  Similarity=0.265  Sum_probs=75.2

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCCCC----cH-------HHHHHHHHHHHhCCCeEEEe
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSG----TK-------VQCLTSASSALKKGKSVFLD   84 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~~~----~~-------~~~~~~~~~~L~~G~~VIID   84 (636)
                      ++.+|+|+|+|||||||+|++|.+++   +.....++.|.+|.+...    +.       .++...+.....+|..||++
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~G~ivIva   80 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLADQGIIVIVA   80 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence            46789999999999999999998776   456789999999975322    11       12234555556889999999


Q ss_pred             CCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHH
Q 006654           85 RCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSV  123 (636)
Q Consensus        85 ~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~  123 (636)
                      .....++.|....++ ...  .+.-||+++|.++|.+|..
T Consensus        81 ~isp~~~~R~~~R~~~~~~--~f~eVyv~~~~e~~~~RD~  118 (156)
T PF01583_consen   81 FISPYREDREWARELIPNE--RFIEVYVDCPLEVCRKRDP  118 (156)
T ss_dssp             ----SHHHHHHHHHHHHTT--EEEEEEEES-HHHHHHHTT
T ss_pred             eccCchHHHHHHHHhCCcC--ceEEEEeCCCHHHHHHhCc
Confidence            999999999888877 543  5678999999999999953

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>cd02903 Macro_BAL_like Macro domain, BAL_like family

Probab=99.06  E-value=7.1e-11  Score=110.87  Aligned_cols=102  Identities=14%  Similarity=0.138  Sum_probs=83.1

Q ss_pred             CCchhhHHHHHHHHhhcCCCCCCCCCCcccCCCCCCcccccccccccCcceecccccccchhhcccCChhhhhhhcccCC
Q 006654          194 NPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSS  273 (636)
Q Consensus       194 ~~~~~v~~~i~k~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~l~~~~~  273 (636)
                      +++.++|.++++.+++......+|.  ..       .|.+.++.|.+.-|.+.+.+..  . ....+..++.+||.++.+
T Consensus        36 aI~~~~G~~l~~~~~~~~~~~~~G~--~~-------vT~~~~L~~k~IiH~~~p~~~~--~-~~~~l~~~~~~~L~~a~~  103 (137)
T cd02903          36 AILRKAGPELQKELDKAKLGQTVGS--VI-------VTKGGNLPCKYVYHVVLPNWSN--G-ALKILKDIVSECLEKCEE  103 (137)
T ss_pred             HHHHhccHHHHHHHHHHcCCCCCCe--EE-------EecCCCCCCCEEEEecCCCCCC--c-hHHHHHHHHHHHHHHHHH
Confidence            7889999999999887655544443  21       1344566788888887777765  2 456788899999999999


Q ss_pred             CCCCccccccCccCCCCCChHHHHHHHHHHHHHH
Q 006654          274 SDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEF  307 (636)
Q Consensus       274 ~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f  307 (636)
                      .+++|||||+||||+||||.++||+++++++.+|
T Consensus       104 ~~~~SIAfP~igtG~~g~p~~~~A~~~~~~i~~f  137 (137)
T cd02903         104 LSYTSISFPAIGTGNLGFPKDVVAKIMFDEVFKF  137 (137)
T ss_pred             CCCcEEEECCCcCcCCCCCHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999876

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=99.05  E-value=1.2e-09  Score=105.80  Aligned_cols=115  Identities=19%  Similarity=0.242  Sum_probs=75.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC-------------cHHHHHHHHHH-HHhCCCeEEEeC--
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-------------TKVQCLTSASS-ALKKGKSVFLDR--   85 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~-------------~~~~~~~~~~~-~L~~G~~VIID~--   85 (636)
                      -|+|+|+|||||||+++.|++.++.+|  +|.|.+.+...+             .++.+...+.. .+..+ +.||..  
T Consensus         4 ~IvLiG~mGaGKSTIGr~LAk~L~~~F--~D~D~~Ie~~~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~-~~ViaTGG   80 (172)
T COG0703           4 NIVLIGFMGAGKSTIGRALAKALNLPF--IDTDQEIEKRTGMSIAEIFEEEGEEGFRRLETEVLKELLEED-NAVIATGG   80 (172)
T ss_pred             cEEEEcCCCCCHhHHHHHHHHHcCCCc--ccchHHHHHHHCcCHHHHHHHHhHHHHHHHHHHHHHHHhhcC-CeEEECCC
Confidence            489999999999999999999999554  777777433222             11223344444 44444 444443  


Q ss_pred             -CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHh
Q 006654           86 -CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ  146 (636)
Q Consensus        86 -tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~  146 (636)
                       ...+++.|..+   +..+.   +|||++|.+++.+|+.....+|.. ....+.+.++..++
T Consensus        81 G~v~~~enr~~l---~~~g~---vv~L~~~~e~l~~Rl~~~~~RPll-~~~~~~~~l~~L~~  135 (172)
T COG0703          81 GAVLSEENRNLL---KKRGI---VVYLDAPFETLYERLQRDRKRPLL-QTEDPREELEELLE  135 (172)
T ss_pred             ccccCHHHHHHH---HhCCe---EEEEeCCHHHHHHHhccccCCCcc-cCCChHHHHHHHHH
Confidence             56777888777   55554   899999999999999955554442 23444444555444

>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family

Probab=99.05  E-value=1.3e-10  Score=113.54  Aligned_cols=114  Identities=18%  Similarity=0.189  Sum_probs=89.6

Q ss_pred             CccCCCCCchhhHHHHHHHHhhc----CCCCCCCCCCcccCCCCCCcccccccccccCcceecccccccc-hhhcccCCh
Q 006654          188 GSFGQKNPDAKIQLGIMKFLKKV----DAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAG-EEVKGTENP  262 (636)
Q Consensus       188 gc~~~~~~~~~v~~~i~k~l~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~  262 (636)
                      |..+. +++.+.|.++++.++..    |. -++|.  ..       .|.+.++.|.++-|.+.|.|.... ....+.+..
T Consensus        31 ggv~~-ai~~~~G~~l~~e~~~~~~~~g~-~~~G~--~~-------~T~~~~L~~k~IiH~v~P~~~~~~~~~~~~~L~~   99 (175)
T cd02907          31 GGLAL-AIVKAGGPEIQEESDEYVRKNGP-VPTGE--VV-------VTSAGKLPCKYVIHAVGPRWSGGEAEECVEKLKK   99 (175)
T ss_pred             CCHHH-HHHHHHhHHHHHHHHHHHHhcCC-CCCCc--EE-------EecCCCCCCCEEEEeCCCcCCCCCCchHHHHHHH
Confidence            45555 78899999998776542    32 24554  11       133446678888888888776532 345678889


Q ss_pred             hhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcC
Q 006654          263 EVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG  312 (636)
Q Consensus       263 ~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~  312 (636)
                      ++.+||..+.+++++|||||+||||+||||.++||+++++++.+|+.+++
T Consensus       100 ~~~~~L~~a~~~~~~SIA~P~lgtG~~g~p~~~~a~~~~~~i~~fl~~~~  149 (175)
T cd02907         100 AILNSLRKAEELGLRSIAIPAISSGIFGFPLERCVETIVEAVKEFLETKG  149 (175)
T ss_pred             HHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999863

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains

>COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only]

Probab=99.04  E-value=8.1e-11  Score=114.65  Aligned_cols=129  Identities=13%  Similarity=0.136  Sum_probs=92.7

Q ss_pred             HHHHHHHHhccCCCCcccCCCccCCCCCchhhHHHHHHHHhhc-----CCCCCCCCCCcccCCCCCCcccccccccccCc
Q 006654          168 DVQAALDTYSGLGPLDTLPHGSFGQKNPDAKIQLGIMKFLKKV-----DAPSNTGSTASSTQDPVPPQITEEKNSCLEGQ  242 (636)
Q Consensus       168 ~vdaiv~~~~~Lgpfd~~phgc~~~~~~~~~v~~~i~k~l~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (636)
                      .+|+++++-+   |+. ..+|+.|. +++...+++|.+-....     +-..++|. ++        -|...+++...+-
T Consensus        16 ~~daIVnaAN---~~l-~~gGGVd~-AI~~~~g~~l~~~~~~~~~~~~~~~~~~G~-Av--------it~~~~l~a~~Vi   81 (179)
T COG2110          16 EADAIVNAAN---SQL-LGGGGVAG-AIHRAAGPQLEEECAEIAPKRGGGRIPVGE-AV--------ITEAGRLPAKYVI   81 (179)
T ss_pred             ehhheeeccc---ccC-CCCCcHHH-HHHHHhhHHHHHHHHHHhhhhcCCCCCceE-EE--------EccCcCCCCCEEE
Confidence            6777776533   221 11578878 89999999999666653     22234443 11        1122233333444


Q ss_pred             ceecccccccchhhcccCChhhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHh
Q 006654          243 EITSLLSDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNK  310 (636)
Q Consensus       243 ~~~~~~~~~~~~~~~~~l~~~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~  310 (636)
                      |.+.+.|..+++...+.+..++..||.++.+++++|||||+||||+||||.+++++|+++++.+|+..
T Consensus        82 H~vgp~~~~g~~~~~e~l~~a~~~~l~~a~~~g~~SiAfPaistGv~G~p~~~aa~i~~~~v~~~~~~  149 (179)
T COG2110          82 HTVGPSWRGGSKDEAELLAAAYRAALRLAKEAGVRSVAFPAISTGVYGFPLEEAARIAVEAVKDFLPE  149 (179)
T ss_pred             ecCCCcccCCChhHHHHHHHHHHHHHHHHHHcCCceeecccccCcccCCCHHHHHHHHHHHHHHhccc
Confidence            44445555456777789999999999999999999999999999999999999999999999999975

>PRK08118 topology modulation protein; Reviewed

Probab=99.04  E-value=1.3e-09  Score=105.63  Aligned_cols=96  Identities=22%  Similarity=0.347  Sum_probs=64.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc--CCCCC-cHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN--KGKSG-TKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVK   98 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir--~~~~~-~~~~~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~   98 (636)
                      .|+++|+|||||||+|++|++.++.  .+++.|.+.  .++.. +.+.....+.+.+ .+..+|+|+. +.......+  
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l~~--~~~~lD~l~~~~~w~~~~~~~~~~~~~~~~-~~~~wVidG~-~~~~~~~~l--   76 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKLNI--PVHHLDALFWKPNWEGVPKEEQITVQNELV-KEDEWIIDGN-YGGTMDIRL--   76 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC--CceecchhhcccCCcCCCHHHHHHHHHHHh-cCCCEEEeCC-cchHHHHHH--
Confidence            4889999999999999999999984  446666554  22322 3333334444444 4567999994 332221112  


Q ss_pred             hCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           99 LGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        99 l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                       ...+   .+|+|++|.++|..|+..|..
T Consensus        77 -~~~d---~vi~Ld~p~~~~~~R~~~R~~  101 (167)
T PRK08118         77 -NAAD---TIIFLDIPRTICLYRAFKRRV  101 (167)
T ss_pred             -HhCC---EEEEEeCCHHHHHHHHHHHHH
Confidence             2222   289999999999999999965

>PRK13948 shikimate kinase; Provisional

Probab=99.02  E-value=2.5e-09  Score=105.14  Aligned_cols=101  Identities=18%  Similarity=0.110  Sum_probs=68.6

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC-------------cHHHHHHH-HHHHHhCCCeE
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-------------TKVQCLTS-ASSALKKGKSV   81 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~-------------~~~~~~~~-~~~~L~~G~~V   81 (636)
                      ...++.+|+|+|+|||||||+++.|++.++  +..+|.|.+.....+             .+.++... +.+.+..+..|
T Consensus         6 ~~~~~~~I~LiG~~GsGKSTvg~~La~~lg--~~~iD~D~~ie~~~g~si~~if~~~Ge~~fR~~E~~~l~~l~~~~~~V   83 (182)
T PRK13948          6 IERPVTWVALAGFMGTGKSRIGWELSRALM--LHFIDTDRYIERVTGKSIPEIFRHLGEAYFRRCEAEVVRRLTRLDYAV   83 (182)
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHHHHcC--CCEEECCHHHHHHHhCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCeE
Confidence            345678999999999999999999999998  455788876543222             12222233 33333444444


Q ss_pred             EEe--CCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHh
Q 006654           82 FLD--RCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVK  124 (636)
Q Consensus        82 IID--~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~  124 (636)
                      |.-  ++...+..|..+   ++.+.   +|||++|.+++.+|+..
T Consensus        84 Ia~GgG~v~~~~n~~~l---~~~g~---vV~L~~~~e~l~~Rl~~  122 (182)
T PRK13948         84 ISLGGGTFMHEENRRKL---LSRGP---VVVLWASPETIYERTRP  122 (182)
T ss_pred             EECCCcEEcCHHHHHHH---HcCCe---EEEEECCHHHHHHHhcC
Confidence            432  466777777766   44444   78999999999999843

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=99.01  E-value=3.8e-09  Score=103.33  Aligned_cols=106  Identities=19%  Similarity=0.248  Sum_probs=80.6

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhcCCCC-----CcH------HHHHHHHHHHHhCCCeE
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKS-----GTK------VQCLTSASSALKKGKSV   81 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir~~~~-----~~~------~~~~~~~~~~L~~G~~V   81 (636)
                      ...++.+|+|+|+|||||||+|+.|...+.   ....+++.|.++....     ...      ..+...+...+..|..|
T Consensus        14 ~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V   93 (184)
T TIGR00455        14 NGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLGFSEEDRKENIRRIGEVAKLFVRNGIIV   93 (184)
T ss_pred             hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence            446788999999999999999999998763   2356788888864311     111      11224455667889999


Q ss_pred             EEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHH
Q 006654           82 FLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSV  123 (636)
Q Consensus        82 IID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~  123 (636)
                      |+|.++....+|..+..+ ...  .+.++++++|.+++.+|..
T Consensus        94 I~d~~~~~~~~r~~~~~~~~~~--~~~~v~l~~~~e~~~~R~~  134 (184)
T TIGR00455        94 ITSFISPYRADRQMVRELIEKG--EFIEVFVDCPLEVCEQRDP  134 (184)
T ss_pred             EEecCCCCHHHHHHHHHhCcCC--CeEEEEEeCCHHHHHHhCc
Confidence            999999999999888887 544  5678999999999999943

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PRK07261 topology modulation protein; Provisional

Probab=99.01  E-value=1.4e-09  Score=105.77  Aligned_cols=98  Identities=18%  Similarity=0.211  Sum_probs=70.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC--CCC-cHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG--KSG-TKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVK   98 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~--~~~-~~~~~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~   98 (636)
                      .|+++|+|||||||||+.|++.++.  .+++.|.++..  +.. +.+.....+.+.+..+. +|+|++.........+  
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~~--~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-wIidg~~~~~~~~~~l--   76 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYNC--PVLHLDTLHFQPNWQERDDDDMIADISNFLLKHD-WIIDGNYSWCLYEERM--   76 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCC--CeEecCCEEeccccccCCHHHHHHHHHHHHhCCC-EEEcCcchhhhHHHHH--
Confidence            4889999999999999999999884  45666766532  222 34455677777777665 9999975443323333  


Q ss_pred             hCCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654           99 LGGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (636)
Q Consensus        99 l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~  128 (636)
                       ....   .+|+|++|..+|..|+.+|..+
T Consensus        77 -~~ad---~vI~Ld~p~~~~~~R~lkR~~~  102 (171)
T PRK07261         77 -QEAD---QIIFLNFSRFNCLYRAFKRYLK  102 (171)
T ss_pred             -HHCC---EEEEEcCCHHHHHHHHHHHHHH
Confidence             2222   2889999999999999999754

>PRK13946 shikimate kinase; Provisional

Probab=99.00  E-value=3.6e-09  Score=103.91  Aligned_cols=122  Identities=17%  Similarity=0.169  Sum_probs=79.9

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCc-------------HHHH-HHHHHHHHhCCCeEEEe
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT-------------KVQC-LTSASSALKKGKSVFLD   84 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~-------------~~~~-~~~~~~~L~~G~~VIID   84 (636)
                      .+..|+|+|+|||||||+++.|++.++  +.+++.|.+.....+.             .... ...+.+.+..+..||..
T Consensus         9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg--~~~id~D~~~~~~~g~~~~e~~~~~ge~~~~~~e~~~l~~l~~~~~~Vi~~   86 (184)
T PRK13946          9 GKRTVVLVGLMGAGKSTVGRRLATMLG--LPFLDADTEIERAARMTIAEIFAAYGEPEFRDLERRVIARLLKGGPLVLAT   86 (184)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcC--CCeECcCHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCeEEEC
Confidence            456899999999999999999999999  4557877654322220             0111 13333344455556655


Q ss_pred             C--CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhc
Q 006654           85 R--CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKE  149 (636)
Q Consensus        85 ~--tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe  149 (636)
                      +  +.+.+..|..+   +..+.   .|||++|.+++.+|+..|..++.. ....+.+.++++.+.+.
T Consensus        87 ggg~~~~~~~r~~l---~~~~~---~v~L~a~~e~~~~Rl~~r~~rp~~-~~~~~~~~i~~~~~~R~  146 (184)
T PRK13946         87 GGGAFMNEETRAAI---AEKGI---SVWLKADLDVLWERVSRRDTRPLL-RTADPKETLARLMEERY  146 (184)
T ss_pred             CCCCcCCHHHHHHH---HcCCE---EEEEECCHHHHHHHhcCCCCCCcC-CCCChHHHHHHHHHHHH
Confidence            4  45666666655   33333   689999999999999988765421 12345567777776664

>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]

Probab=98.99  E-value=2.1e-09  Score=106.79  Aligned_cols=138  Identities=21%  Similarity=0.294  Sum_probs=107.4

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcC----CCeEEeehhh-hcCC---CCCc-------HHHHHHHHHHHHhCCCeEEEeC
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSA----RPWARICQDT-INKG---KSGT-------KVQCLTSASSALKKGKSVFLDR   85 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~----~~~~~Is~D~-ir~~---~~~~-------~~~~~~~~~~~L~~G~~VIID~   85 (636)
                      .||+++|.|.|||||.|+.|.+.+.    +..+.|..|. +.-+   ..+.       +..+...+.+.|..+..||+|.
T Consensus         2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~deslg~~~ns~y~~s~~EK~lRg~L~S~v~R~Lsk~~iVI~Ds   81 (281)
T KOG3062|consen    2 PLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDESLGIEKNSNYGDSQAEKALRGKLRSAVDRSLSKGDIVIVDS   81 (281)
T ss_pred             CeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhhcCCCCcccccccHHHHHHHHHHHHHHHhhcccCcEEEEec
Confidence            3789999999999999999886653    2133333222 2211   1221       2235578888999999999999


Q ss_pred             CCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCccEEE
Q 006654           86 CNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRIT  161 (636)
Q Consensus        86 tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd~Vi  161 (636)
                      -|+-+-.|.++-.+ +..++..++|+..+|.++|.+.+..|.....   ++.++++++.+..+||+|.....||.-.
T Consensus        82 lNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~~~p~e---~gy~~e~le~L~~RyEeP~s~NRWDsPL  155 (281)
T KOG3062|consen   82 LNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWNSEREDPGE---DGYDDELLEALVQRYEEPNSRNRWDSPL  155 (281)
T ss_pred             ccccccceeeeeeehhccceeEEEEEecCCHHHHHHhcccCCCCCC---CCCCHHHHHHHHHHhhCCCccccccCcc
Confidence            99999999999888 8888888999999999999999988876322   3588999999999999999988888643

>PLN02842 nucleotide kinase

Probab=98.98  E-value=3.9e-09  Score=117.67  Aligned_cols=170  Identities=21%  Similarity=0.261  Sum_probs=103.2

Q ss_pred             EEEccCCCcHHHHHHHHHHHcCCCeEEeehhh-hcCC------------------CCCcHHHHHHHHHHHHhC----CCe
Q 006654           24 IMVGAPGSGKSTFCEHVMRSSARPWARICQDT-INKG------------------KSGTKVQCLTSASSALKK----GKS   80 (636)
Q Consensus        24 vLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~-ir~~------------------~~~~~~~~~~~~~~~L~~----G~~   80 (636)
                      ++.|+|||||||+|+.|++.++  +.||+.++ ++..                  ...+...+...+..++..    ..+
T Consensus         1 ~I~G~PGSGKSTqa~~Lak~lg--~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G   78 (505)
T PLN02842          1 MISGAPASGKGTQCELIVHKFG--LVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKG   78 (505)
T ss_pred             CeeCCCCCCHHHHHHHHHHHhC--CCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCc
Confidence            4789999999999999999998  67777543 3321                  122333444555555532    346


Q ss_pred             EEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCccE
Q 006654           81 VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSR  159 (636)
Q Consensus        81 VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd~  159 (636)
                      +|||+++++..+.+.+... ....   .+|+|++|.+++.+|+..|...+..         ...++..+.+|...+.-.+
T Consensus        79 ~ILDGfPRt~~Qa~~Le~~~~~PD---lVI~LDvpdevlleRl~gR~~dp~t---------G~iYh~~~~pP~~~~~~~r  146 (505)
T PLN02842         79 WLLDGYPRSFAQAQSLEKLKIRPD---IFILLDVPDEILIDRCVGRRLDPVT---------GKIYHIKNFPPESEEIKAR  146 (505)
T ss_pred             EEEeCCCCcHHHHHHHHhcCCCCC---EEEEEeCCHHHHHHHHhcccccccc---------CCccccccCCCCccccccc
Confidence            9999999998877666444 2222   4899999999999999998765332         1122223334432221112


Q ss_pred             EEEeCChhHHHHHHHH---hc-cCCCC-cccC---CCccCCCCCchhhHHHHHHHHhh
Q 006654          160 ITLCQNENDVQAALDT---YS-GLGPL-DTLP---HGSFGQKNPDAKIQLGIMKFLKK  209 (636)
Q Consensus       160 Viii~~~~~vdaiv~~---~~-~Lgpf-d~~p---hgc~~~~~~~~~v~~~i~k~l~~  209 (636)
                       ...+.++..+.+.++   |+ ...|. +.-+   +.+.++ .+...|..+|.++|.+
T Consensus       147 -L~~R~DD~eE~IkkRL~~Y~~~t~pIl~~Y~~rl~~IDAs-qs~EeVfeeI~~iL~~  202 (505)
T PLN02842        147 -LITRPDDTEEKVKARLQIYKKNAEAILSTYSDIMVKIDGN-RPKEVVFEEISSLLSQ  202 (505)
T ss_pred             -cccCCCCCHHHHHHHHHHHHHHhhhHHHhcCcEEEEEECC-CCHHHHHHHHHHHHHH
Confidence             123445555656555   44 33443 2122   445555 6677777788877765

>PRK00431 RNase III inhibitor; Provisional

Probab=98.97  E-value=3.9e-10  Score=110.24  Aligned_cols=111  Identities=13%  Similarity=0.175  Sum_probs=87.1

Q ss_pred             CCchhhHHHHHHHHhhc--C-CCCCCCCCCcccCCCCCCcccccccccccCcceecccccccchhhcccCChhhhhhhcc
Q 006654          194 NPDAKIQLGIMKFLKKV--D-APSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQN  270 (636)
Q Consensus       194 ~~~~~v~~~i~k~l~~~--g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~l~~  270 (636)
                      ++....|.++++.+++.  + ..-.+|.  ..       .|...++.|.+..|++.|.|........+.|..++.+||..
T Consensus        37 aI~~~~G~~l~~e~~~~~~~~~~l~~G~--~~-------~T~~~~l~~~~IiH~v~P~~~~~~~~~~~~L~~~~~~~L~~  107 (177)
T PRK00431         37 AIHRAAGPEILEECRELRQQQGPCPTGE--AV-------ITSAGRLPAKYVIHTVGPVWRGGEDNEAELLASAYRNSLRL  107 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCe--EE-------EecCCCCCCCEEEEecCCeecCCCCcHHHHHHHHHHHHHHH
Confidence            78888888988877654  1 2223443  11       13445677888888888877653333567888999999999


Q ss_pred             cCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCC
Q 006654          271 GSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGN  313 (636)
Q Consensus       271 ~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~~  313 (636)
                      +.+.+++|||||+||||+||||.++||+++++++.+|++....
T Consensus       108 a~~~~~~sIa~P~lgtG~~g~p~~~~A~~~~~~i~~f~~~~~~  150 (177)
T PRK00431        108 AAELGLRSIAFPAISTGVYGYPLEDAARIAVKTVREFLTRHKS  150 (177)
T ss_pred             HHHcCCceEEECccccCccCCCHHHHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999999999999999876544

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.97  E-value=1.8e-08  Score=99.06  Aligned_cols=102  Identities=14%  Similarity=0.188  Sum_probs=64.7

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC------CCC-cHHHHH----------------------HH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG------KSG-TKVQCL----------------------TS   70 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~------~~~-~~~~~~----------------------~~   70 (636)
                      ..+++|+||+||||||+++.|+...+..+...+...-+..      ... ..+...                      ..
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~~   81 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGIE   81 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcHH
Confidence            4579999999999999999998876633322221111100      000 000000                      23


Q ss_pred             HHHHHhCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           71 ASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        71 ~~~~L~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      +.+.+..|..||++++      +..+..+ +..+....+|++++|.+++.+|+..|.+
T Consensus        82 ~~~~l~~g~~VI~~G~------~~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~  133 (186)
T PRK10078         82 IDLWLHAGFDVLVNGS------RAHLPQARARYQSALLPVCLQVSPEILRQRLENRGR  133 (186)
T ss_pred             HHHHHhCCCEEEEeCh------HHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCC
Confidence            5567788999999884      3333333 3344456688999999999999998854

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=98.97  E-value=6.3e-09  Score=101.26  Aligned_cols=143  Identities=16%  Similarity=0.210  Sum_probs=82.5

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCc-------------HHHHHHHHHHHHhCCCeEEEeC-
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT-------------KVQCLTSASSALKKGKSVFLDR-   85 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~-------------~~~~~~~~~~~L~~G~~VIID~-   85 (636)
                      +..|+|+|++||||||+++.|++.++  +..++.|.......+.             +......+...+.....+|+.. 
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l~--~~~vd~D~~i~~~~g~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vi~~g   81 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQLN--MEFYDSDQEIEKRTGADIGWVFDVEGEEGFRDREEKVINELTEKQGIVLATG   81 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHcC--CcEEECCchHHHHhCcCHhHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence            44689999999999999999999988  4557777543221110             0111223333344344555553 


Q ss_pred             --CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCccEEEEe
Q 006654           86 --CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLC  163 (636)
Q Consensus        86 --tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd~Viii  163 (636)
                        ...++..|..+   +..+.   +|||++|.++|.+|+..|..+|.. .+.-+.+.+..++... .|. ++.+.++.+-
T Consensus        82 gg~v~~~~~~~~l---~~~~~---vv~L~~~~e~~~~Ri~~~~~rP~~-~~~~~~~~~~~l~~~R-~~~-Y~~~Ad~~id  152 (172)
T PRK05057         82 GGSVKSRETRNRL---SARGV---VVYLETTIEKQLARTQRDKKRPLL-QVDDPREVLEALANER-NPL-YEEIADVTIR  152 (172)
T ss_pred             CchhCCHHHHHHH---HhCCE---EEEEeCCHHHHHHHHhCCCCCCCC-CCCCHHHHHHHHHHHH-HHH-HHhhCCEEEE
Confidence              34455655444   34443   889999999999999876655432 1223345565555544 333 3443444443


Q ss_pred             CChhHHHHHH
Q 006654          164 QNENDVQAAL  173 (636)
Q Consensus       164 ~~~~~vdaiv  173 (636)
                      .+...+++++
T Consensus       153 t~~~s~~ei~  162 (172)
T PRK05057        153 TDDQSAKVVA  162 (172)
T ss_pred             CCCCCHHHHH
Confidence            3333344433

>KOG0562 consensus Predicted hydrolase (HIT family) [General function prediction only]

Probab=98.96  E-value=2e-10  Score=107.93  Aligned_cols=55  Identities=31%  Similarity=0.383  Sum_probs=44.4

Q ss_pred             HHHHHHHHHhcCccCCCCCeEEEcCcEEEeccCCCCCcccccccCCCCccchhccccc
Q 006654          559 SWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKVHPSDNLPPGTLLCICLSSINK  616 (636)
Q Consensus       559 ~~~~a~~~~~~~p~~~~~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~~~~~~~~~~~~  616 (636)
                      ||+.||..++-.||+   .++..-|+||||+|+||||++|+|||||...+|+|-++.+
T Consensus         2 sw~~~i~~~i~k~e~---V~~es~d~vvvIrD~fPKa~~H~LvLpr~s~i~~l~~~~q   56 (184)
T KOG0562|consen    2 SWHEAIVMDIPKPEN---VYIESPDDVVVIRDKFPKARMHLLVLPRRSSIDSLFSVVQ   56 (184)
T ss_pred             chhhhhhhcCCccce---eeccCcccEEEEcccCccceeEEEEecccchhHHHHHHHH
Confidence            688666655555554   4555558999999999999999999999999999988764

>PRK00131 aroK shikimate kinase; Reviewed

Probab=98.95  E-value=6.4e-09  Score=99.60  Aligned_cols=122  Identities=16%  Similarity=0.149  Sum_probs=71.3

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCc-------------HHHHHHHHHHHHhCCC-eEEE
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT-------------KVQCLTSASSALKKGK-SVFL   83 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~-------------~~~~~~~~~~~L~~G~-~VII   83 (636)
                      .++.+|+|+|+|||||||+|+.|++.++  +..++.|.+.....+.             +.+....+...+..+. .||.
T Consensus         2 ~~~~~i~l~G~~GsGKstla~~La~~l~--~~~~d~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~   79 (175)
T PRK00131          2 LKGPNIVLIGFMGAGKSTIGRLLAKRLG--YDFIDTDHLIEARAGKSIPEIFEEEGEAAFRELEEEVLAELLARHNLVIS   79 (175)
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHHHhC--CCEEEChHHHHHHcCCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCCEEE
Confidence            3567899999999999999999999998  5567777764332220             1111122233333333 3444


Q ss_pred             eCC--CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhh
Q 006654           84 DRC--NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK  148 (636)
Q Consensus        84 D~t--n~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~f  148 (636)
                      .+.  .+....|..+   +..+   .+|++++|.+.+.+|+..|..++... ..-..+.+..++...
T Consensus        80 ~g~~~~~~~~~r~~l---~~~~---~~v~l~~~~~~~~~R~~~~~~r~~~~-~~~~~~~~~~~~~~~  139 (175)
T PRK00131         80 TGGGAVLREENRALL---RERG---TVVYLDASFEELLRRLRRDRNRPLLQ-TNDPKEKLRDLYEER  139 (175)
T ss_pred             eCCCEeecHHHHHHH---HhCC---EEEEEECCHHHHHHHhcCCCCCCcCC-CCChHHHHHHHHHHH
Confidence            332  2333444333   2222   47899999999999999876533211 122334455555444

>PRK00625 shikimate kinase; Provisional

Probab=98.95  E-value=5.7e-09  Score=101.85  Aligned_cols=98  Identities=16%  Similarity=0.120  Sum_probs=63.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC-----cHH------------HHHHHHHHHHhCCCeEEEe
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-----TKV------------QCLTSASSALKKGKSVFLD   84 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~-----~~~------------~~~~~~~~~L~~G~~VIID   84 (636)
                      .|+|+|+|||||||+|+.|++.++  +.+++.|.+-....+     +..            .....+.+.+.....||..
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~--~~~id~D~~I~~~~g~~~~~~i~eif~~~Ge~~fr~~E~~~l~~l~~~~~VIs~   79 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLS--LPFFDTDDLIVSNYHGALYSSPKEIYQAYGEEGFCREEFLALTSLPVIPSIVAL   79 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC--CCEEEhhHHHHHHhCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHhccCCeEEEC
Confidence            489999999999999999999998  566888765322111     211            1223334445444445544


Q ss_pred             C--CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           85 R--CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        85 ~--tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      +  +....+.+..   ++..+.   +|||++|.+++.+|+..|..
T Consensus        80 GGg~~~~~e~~~~---l~~~~~---Vv~L~~~~e~l~~Rl~~R~~  118 (173)
T PRK00625         80 GGGTLMIEPSYAH---IRNRGL---LVLLSLPIATIYQRLQKRGL  118 (173)
T ss_pred             CCCccCCHHHHHH---HhcCCE---EEEEECCHHHHHHHHhcCCC
Confidence            4  3344444433   333443   89999999999999998865

>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]

Probab=98.94  E-value=1.2e-09  Score=115.61  Aligned_cols=145  Identities=27%  Similarity=0.389  Sum_probs=122.2

Q ss_pred             ccccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCCCCHHHH
Q 006654           14 EEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQR   93 (636)
Q Consensus        14 ~~~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn~~~~~R   93 (636)
                      ++..+.+.+|+++|.|||||||++.......+  +.++++|.+     +++..|.....++|..|+.||+|.||.....|
T Consensus       263 ~~~~~~~eiV~~vgfp~sGks~f~a~~~~~~~--y~~vn~d~l-----g~~~~C~~~~~e~l~~~~sVvidnt~pd~~sr  335 (422)
T KOG2134|consen  263 LKLDGHGEIVVAVGFPGSGKSTFAAKRVVPNG--YKIVNADTL-----GTPQNCLLANAEALKHGKSVVIDNTNPDAESR  335 (422)
T ss_pred             cccCCCCcEEEEEecCCCCcchhhhhhcccCc--eeEeecccC-----CCchhhHHHHHHHhhcccEEeeCCCCcchHHH
Confidence            34556669999999999999999999887766  888899887     78889999999999999999999999999999


Q ss_pred             HHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCccEEEEeCCh
Q 006654           94 TDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNE  166 (636)
Q Consensus        94 ~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd~Viii~~~  166 (636)
                      ..|++. .+.+.++.++.+..+.+.....+..|..+.. ..+..++-++..+..+|+.|.+.|||-.+..++..
T Consensus       336 ~~~~~~a~e~~~p~rcf~~~~s~eq~~hn~~fR~~~~~-~~~~~~dm~~~~~k~kf~~ptl~egft~i~ev~f~  408 (422)
T KOG2134|consen  336 KYYLDCATEREIPIRCFEMNSSVEQAQHNNRFRELSDS-VKDSGSDMVFNSEKSKFQKPTLDEGFTNILEVPFK  408 (422)
T ss_pred             HHHhhhHHHhCccceeeeeccHHHhhhccccchhhccc-hhcccccceeehhhccccCchHhhhhhhhhccchh
Confidence            999999 8888999999999999887777777765321 12345566778888899999999999988766654

>PRK13947 shikimate kinase; Provisional

Probab=98.93  E-value=6.7e-09  Score=99.97  Aligned_cols=100  Identities=17%  Similarity=0.200  Sum_probs=65.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCc-------------HHHHHHHHHHHHhCCCeEEEeC---
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT-------------KVQCLTSASSALKKGKSVFLDR---   85 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~-------------~~~~~~~~~~~L~~G~~VIID~---   85 (636)
                      .|+|+|+|||||||+|+.|++.++  +.+++.|.+.....+.             +......+.+.+.....+|+..   
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg--~~~id~d~~~~~~~g~~~~~~~~~~ge~~~~~~e~~~~~~l~~~~~~vi~~g~g   80 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLS--FGFIDTDKEIEKMTGMTVAEIFEKDGEVRFRSEEKLLVKKLARLKNLVIATGGG   80 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhC--CCEEECchhhhhhcCCcHHHHHHHhChHHHHHHHHHHHHHHhhcCCeEEECCCC
Confidence            389999999999999999999999  5568887765443221             1122233444454444455543   


Q ss_pred             CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccccc
Q 006654           86 CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHE  129 (636)
Q Consensus        86 tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~  129 (636)
                      ..+....+..+   ++.+.   +|+|++|.+.+.+|+..|..++
T Consensus        81 ~vl~~~~~~~l---~~~~~---vv~L~~~~~~l~~Rl~~r~~rp  118 (171)
T PRK13947         81 VVLNPENVVQL---RKNGV---VICLKARPEVILRRVGKKKSRP  118 (171)
T ss_pred             CcCCHHHHHHH---HhCCE---EEEEECCHHHHHHHhcCCCCCC
Confidence            23444443332   44443   8899999999999999886543

>PRK03846 adenylylsulfate kinase; Provisional

Probab=98.92  E-value=1.5e-08  Score=100.52  Aligned_cols=106  Identities=22%  Similarity=0.268  Sum_probs=78.7

Q ss_pred             ccccCccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCC---CC----cH----HHHHHHHHHHHhCCC
Q 006654           14 EEKKWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGK---SG----TK----VQCLTSASSALKKGK   79 (636)
Q Consensus        14 ~~~~~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~---~~----~~----~~~~~~~~~~L~~G~   79 (636)
                      ...+++|.+|+|+|+|||||||+|+.|+..+   +.....++.|.++...   .+    ..    ..+...+...+..|.
T Consensus        18 ~~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~G~   97 (198)
T PRK03846         18 QLHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVAKLMVDAGL   97 (198)
T ss_pred             HhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCCcCcccHHHHHHHHHHHHHHHhhCCC
Confidence            3556788999999999999999999999875   2346778888776431   11    11    122244555667888


Q ss_pred             eEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHH
Q 006654           80 SVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISR  121 (636)
Q Consensus        80 ~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R  121 (636)
                      .||.+..+.....|..+.++ ...+  +.+|||++|.+++.+|
T Consensus        98 ~VI~~~~~~~~~~R~~~r~~l~~~~--~i~V~L~~~~e~~~~R  138 (198)
T PRK03846         98 VVLTAFISPHRAERQMVRERLGEGE--FIEVFVDTPLAICEAR  138 (198)
T ss_pred             EEEEEeCCCCHHHHHHHHHHcccCC--EEEEEEcCCHHHHHhc
Confidence            88877777788999999888 6553  4578999999999999

>PRK13949 shikimate kinase; Provisional

Probab=98.91  E-value=1.2e-08  Score=99.09  Aligned_cols=96  Identities=15%  Similarity=0.107  Sum_probs=61.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC-c------------HHHHHHHHHHHHhCCCeEEE-eC--
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-T------------KVQCLTSASSALKKGKSVFL-DR--   85 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~-~------------~~~~~~~~~~~L~~G~~VII-D~--   85 (636)
                      -|+|+|+|||||||+++.|++.++  +.+++.|.+.....+ +            +.++...+...+.....+|| ++  
T Consensus         3 ~I~liG~~GsGKstl~~~La~~l~--~~~id~D~~i~~~~~~~~~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vis~Ggg   80 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARELG--LSFIDLDFFIENRFHKTVGDIFAERGEAVFRELERNMLHEVAEFEDVVISTGGG   80 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC--CCeecccHHHHHHHCccHHHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence            389999999999999999999998  555777766422111 1            11222333333443344555 44  


Q ss_pred             CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhc
Q 006654           86 CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKR  125 (636)
Q Consensus        86 tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R  125 (636)
                      ......++..+   ++.+.   +|||++|.+.+.+|+..+
T Consensus        81 ~~~~~~~~~~l---~~~~~---vi~L~~~~~~~~~Ri~~~  114 (169)
T PRK13949         81 APCFFDNMELM---NASGT---TVYLKVSPEVLFVRLRLA  114 (169)
T ss_pred             ccCCHHHHHHH---HhCCe---EEEEECCHHHHHHHHhcC
Confidence            23344455444   34454   789999999999999854

>KOG2633 consensus Hismacro and SEC14 domain-containing proteins [Chromatin structure and dynamics; Transcription]

Probab=98.89  E-value=7.2e-10  Score=108.79  Aligned_cols=101  Identities=15%  Similarity=0.088  Sum_probs=76.2

Q ss_pred             CCchhhHHHHHHHHhhcCC-----CCCCCC---CCcccCCCCCCcccccccccccCcceecccccc-cchhhcccCChhh
Q 006654          194 NPDAKIQLGIMKFLKKVDA-----PSNTGS---TASSTQDPVPPQITEEKNSCLEGQEITSLLSDA-AGEEVKGTENPEV  264 (636)
Q Consensus       194 ~~~~~v~~~i~k~l~~~g~-----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~  264 (636)
                      ++|..+++++.--+..+..     .-.++.   |+++++|+++                  |.|.. ..++.. .|..||
T Consensus        61 ai~~aagp~l~~e~~~~~~c~tG~ak~t~~~~Lpak~vIHtvg------------------P~~~~d~~~~~~-~L~~~~  121 (200)
T KOG2633|consen   61 AIHRAAGPELPLECAYLHGCRTGAAKSTGGYGLPAKRVIHTVG------------------PRWKEDKLQECY-FLHSCY  121 (200)
T ss_pred             HHHHhcCCcchHHHHhhcCCCCCeeEecCCCCCceeEEEEecC------------------chhhccchHHHH-HHHHHH
Confidence            5566666666655554322     222332   7888888776                  34443 123333 588899


Q ss_pred             hhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCC
Q 006654          265 ASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGN  313 (636)
Q Consensus       265 ~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~~  313 (636)
                      .|||.+|...++.+||||+||+|+||||.+.||++++++++.|++.++.
T Consensus       122 rs~L~la~~~~ls~iAf~~I~sg~~gyP~e~aa~~~l~ti~~~f~~~~d  170 (200)
T KOG2633|consen  122 RSCLDLAIEKLLSSIAFPKISSGRVGYPWEDAAKIELETIRVFFVKNKD  170 (200)
T ss_pred             HHHHHHHHHhccceeeeeeeeccccCccHHHHHHHHHHHHHHHHhhCCC
Confidence            9999999999999999999999999999999999999999999999866

>PRK14737 gmk guanylate kinase; Provisional

Probab=98.87  E-value=4.8e-08  Score=96.39  Aligned_cols=134  Identities=13%  Similarity=0.097  Sum_probs=79.5

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeE--------------------Eeehhhhc----CCCCCcH--------H
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWA--------------------RICQDTIN----KGKSGTK--------V   65 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~--------------------~Is~D~ir----~~~~~~~--------~   65 (636)
                      .+|.+|+|+|||||||||++++|.+.++..+.                    .++.+.+.    .+.+..+        -
T Consensus         2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YG   81 (186)
T PRK14737          2 ASPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYG   81 (186)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeec
Confidence            46889999999999999999999987642111                    11111111    1100000        0


Q ss_pred             HHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeC-CHHHHHHHHHhcccccCCCCCCChHHHHHH
Q 006654           66 QCLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDL-PAKLCISRSVKRIEHEGNLQGGKAAAVVNR  143 (636)
Q Consensus        66 ~~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~-p~e~l~~R~~~R~~~~~~~~~~vp~evi~r  143 (636)
                      .-...+.+.+.+|+.+|+|-      .+..+..+ ...+..+.+|++.+ +.+++.+|+..|..       ...+++-.+
T Consensus        82 t~~~~i~~~~~~g~~~i~d~------~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~-------~s~e~i~~R  148 (186)
T PRK14737         82 TPKAFIEDAFKEGRSAIMDI------DVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGT-------DSEESIEKR  148 (186)
T ss_pred             CcHHHHHHHHHcCCeEEEEc------CHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCC-------CCHHHHHHH
Confidence            11244677889999999998      44555555 43333335677766 46889999998865       233455555


Q ss_pred             HHhhhcCCCccCCccEEEEeC
Q 006654          144 MLQKKELPKLSEGFSRITLCQ  164 (636)
Q Consensus       144 m~~~fe~P~~~Egfd~Viii~  164 (636)
                      +.++..+-.....||.++.-+
T Consensus       149 l~~~~~e~~~~~~~D~vI~N~  169 (186)
T PRK14737        149 IENGIIELDEANEFDYKIIND  169 (186)
T ss_pred             HHHHHHHHhhhccCCEEEECc
Confidence            555432222234566664443

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=98.87  E-value=1.8e-08  Score=115.13  Aligned_cols=104  Identities=22%  Similarity=0.248  Sum_probs=81.0

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCC----CeEEeehhhhcCCCCC----cH---H----HHHHHHHHHHhCCCeEE
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR----PWARICQDTINKGKSG----TK---V----QCLTSASSALKKGKSVF   82 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~----~~~~Is~D~ir~~~~~----~~---~----~~~~~~~~~L~~G~~VI   82 (636)
                      ..+.+|+|+|+|||||||+|+.|++.++.    .+..++.|.++.+..+    +.   .    .+...+...++.|..+|
T Consensus       390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~ge~~f~~~er~~~~~~l~~~a~~v~~~Gg~vI  469 (568)
T PRK05537        390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSELGFSKEDRDLNILRIGFVASEITKNGGIAI  469 (568)
T ss_pred             CCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence            35679999999999999999999998872    3477899998754322    11   1    11234455678899999


Q ss_pred             EeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHH
Q 006654           83 LDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRS  122 (636)
Q Consensus        83 ID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~  122 (636)
                      +|.++.....|..+.++ ++.+ .+.+|+|++|.++|.+|+
T Consensus       470 ~~~~~p~~~~R~~nr~llk~~g-~fivV~L~~p~e~l~~R~  509 (568)
T PRK05537        470 CAPIAPYRATRREVREMIEAYG-GFIEVHVATPLEVCEQRD  509 (568)
T ss_pred             EEeCCchHHHHHHHHHHHhhcC-CEEEEEEcCCHHHHHHhc
Confidence            99999999999999888 7655 356789999999999996

>PRK01184 hypothetical protein; Provisional

Probab=98.87  E-value=3.7e-08  Score=96.22  Aligned_cols=100  Identities=21%  Similarity=0.306  Sum_probs=68.3

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh-hhhcCC-----CC------CcH----------HHHHHHHHHHHhC-
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINKG-----KS------GTK----------VQCLTSASSALKK-   77 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~-D~ir~~-----~~------~~~----------~~~~~~~~~~L~~-   77 (636)
                      .+|+|+|+|||||||+|+ ++++++  +.+++. |.+++.     ..      +..          ......+...+.. 
T Consensus         2 ~~i~l~G~~GsGKsT~a~-~~~~~g--~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~   78 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSK-IAREMG--IPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKELGMDAVAKRTVPKIREK   78 (184)
T ss_pred             cEEEEECCCCCCHHHHHH-HHHHcC--CcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHChHHHHHHHHHHHHhc
Confidence            479999999999999987 788888  667876 555432     11      000          0111232334433 


Q ss_pred             -CCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           78 -GKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        78 -G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                       +..||+|++ +...++..|.+. .   ..+.+|++++|.+++.+|+..|..
T Consensus        79 ~~~~vvidg~-r~~~e~~~~~~~~~---~~~~~i~v~~~~~~~~~Rl~~R~~  126 (184)
T PRK01184         79 GDEVVVIDGV-RGDAEVEYFRKEFP---EDFILIAIHAPPEVRFERLKKRGR  126 (184)
T ss_pred             CCCcEEEeCC-CCHHHHHHHHHhCC---cccEEEEEECCHHHHHHHHHHcCC
Confidence             567999997 677777766555 3   234688999999999999998864

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=98.85  E-value=2e-08  Score=94.60  Aligned_cols=98  Identities=15%  Similarity=0.186  Sum_probs=62.6

Q ss_pred             EEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC-c------------HHHHHHHHHHHHhCCCeEEEeCCC--
Q 006654           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-T------------KVQCLTSASSALKKGKSVFLDRCN--   87 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~-~------------~~~~~~~~~~~L~~G~~VIID~tn--   87 (636)
                      |+|+|+|||||||+|+.|++.++  +..++.|.+.....+ .            +......+...+.....+||+...  
T Consensus         2 i~l~G~~GsGKstla~~la~~l~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~vi~~g~~~   79 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKALG--LPFVDLDELIEQRAGMSIPEIFAEEGEEGFRELEREVLLLLLTKENAVIATGGGA   79 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhC--CCEEEchHHHHHHcCCCHHHHHHHHCHHHHHHHHHHHHHHHhccCCcEEECCCCc
Confidence            78999999999999999999998  556788776533222 1            011112233344444455555322  


Q ss_pred             -CCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654           88 -LEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (636)
Q Consensus        88 -~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~  128 (636)
                       .....|..+   ...+   .+||+++|.+++.+|+..|..+
T Consensus        80 i~~~~~~~~~---~~~~---~~i~l~~~~e~~~~R~~~r~~r  115 (154)
T cd00464          80 VLREENRRLL---LENG---IVVWLDASPEELLERLARDKTR  115 (154)
T ss_pred             cCcHHHHHHH---HcCC---eEEEEeCCHHHHHHHhccCCCC
Confidence             333332222   3333   3889999999999999998744

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PRK00889 adenylylsulfate kinase; Provisional

Probab=98.84  E-value=1.9e-08  Score=97.52  Aligned_cols=102  Identities=20%  Similarity=0.231  Sum_probs=70.8

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhcCCCC----C---cHH----HHHHHHHHHHhCCCeEEE
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKS----G---TKV----QCLTSASSALKKGKSVFL   83 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir~~~~----~---~~~----~~~~~~~~~L~~G~~VII   83 (636)
                      +++.+|+|+|+|||||||+|+.|+..+.   ..+.+++.|.++....    .   ...    .+...+...+..|..||+
T Consensus         2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~~~~~~~~~r~~~~~~~~~~a~~~~~~g~~vi~   81 (175)
T PRK00889          2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSKGLGFSKEDRDTNIRRIGFVANLLTRHGVIVLV   81 (175)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHhCCCEEEE
Confidence            3567999999999999999999998763   2356788887753211    1   111    111233333467888999


Q ss_pred             eCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHH
Q 006654           84 DRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRS  122 (636)
Q Consensus        84 D~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~  122 (636)
                      |+++.....|..+..+.   ..+.+|++++|.+++.+|.
T Consensus        82 ~~~~~~~~~~~~l~~~~---~~~~~v~l~~~~e~~~~R~  117 (175)
T PRK00889         82 SAISPYRETREEVRANI---GNFLEVFVDAPLEVCEQRD  117 (175)
T ss_pred             ecCCCCHHHHHHHHhhc---CCeEEEEEcCCHHHHHHhC
Confidence            99877667776665541   2456899999999999995

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=98.84  E-value=3.3e-08  Score=95.43  Aligned_cols=107  Identities=23%  Similarity=0.274  Sum_probs=78.4

Q ss_pred             cccCccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCCC---C-cHH-------HHHHHHHHHHhCCCe
Q 006654           15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKS---G-TKV-------QCLTSASSALKKGKS   80 (636)
Q Consensus        15 ~~~~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~~---~-~~~-------~~~~~~~~~L~~G~~   80 (636)
                      ....++.+|+|.|++||||||+|.+|.+++   |.....+|.|.+|.+..   + +.+       ++...+.....+|--
T Consensus        18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevAkll~daG~i   97 (197)
T COG0529          18 LKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVAKLLADAGLI   97 (197)
T ss_pred             HhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHCCeE
Confidence            455678899999999999999999998775   45567899999986532   2 111       122333344466777


Q ss_pred             EEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHH
Q 006654           81 VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSV  123 (636)
Q Consensus        81 VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~  123 (636)
                      +|+.......+.|+.-.++ .+.  .+.-||+++|.++|.+|--
T Consensus        98 viva~ISP~r~~R~~aR~~~~~~--~FiEVyV~~pl~vce~RDp  139 (197)
T COG0529          98 VIVAFISPYREDRQMARELLGEG--EFIEVYVDTPLEVCERRDP  139 (197)
T ss_pred             EEEEeeCccHHHHHHHHHHhCcC--ceEEEEeCCCHHHHHhcCc
Confidence            7777777888888888777 443  4567899999999998854

>PRK06547 hypothetical protein; Provisional

Probab=98.83  E-value=2.2e-08  Score=97.59  Aligned_cols=106  Identities=21%  Similarity=0.258  Sum_probs=70.5

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHH---HHHHHHHH--------------------
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKV---QCLTSASS--------------------   73 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~---~~~~~~~~--------------------   73 (636)
                      ...+.+|++.|+|||||||+|+.|++.++  +..++.|.+...+.+...   .+...+.+                    
T Consensus        12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~--~~~~~~d~~~~~~~~~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~~~~~   89 (172)
T PRK06547         12 GGGMITVLIDGRSGSGKTTLAGALAARTG--FQLVHLDDLYPGWHGLAAASEHVAEAVLDEGRPGRWRWDWANNRPGDWV   89 (172)
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHhC--CCeecccceecccccCChHHHHHHHHHHhCCCCceecCCCCCCCCCCcE
Confidence            45678889999999999999999999987  556888888765433211   11111111                    


Q ss_pred             HHhCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654           74 ALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (636)
Q Consensus        74 ~L~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~  128 (636)
                      .+..+..+|++++......   +.++ .+ +..+..|++++|.+++.+|...|..+
T Consensus        90 ~l~~~~vVIvEG~~al~~~---~r~~~d~-~g~v~~I~ld~~~~vr~~R~~~Rd~~  141 (172)
T PRK06547         90 SVEPGRRLIIEGVGSLTAA---NVALASL-LGEVLTVWLDGPEALRKERALARDPD  141 (172)
T ss_pred             EeCCCCeEEEEehhhccHH---HHHHhcc-CCCEEEEEEECCHHHHHHHHHhcCch
Confidence            0112345888996443222   3333 33 33356899999999999999999864

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=98.83  E-value=3.3e-08  Score=96.55  Aligned_cols=108  Identities=19%  Similarity=0.294  Sum_probs=75.9

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC----C----CC-----------c-----HHHHHHHHHHHHh
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG----K----SG-----------T-----KVQCLTSASSALK   76 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~----~----~~-----------~-----~~~~~~~~~~~L~   76 (636)
                      .+|+|-|+|.|||||+|+.|...+..+|.++.-|.+...    .    .+           .     .......+....+
T Consensus         2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~iaa~a~   81 (174)
T PF07931_consen    2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIAAMAR   81 (174)
T ss_dssp             -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHHHHHHHh
Confidence            579999999999999999999999999999999888531    0    01           1     1123356667778


Q ss_pred             CCCeEEEeCCCCCHHH-HHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 006654           77 KGKSVFLDRCNLEREQ-RTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEG  130 (636)
Q Consensus        77 ~G~~VIID~tn~~~~~-R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~  130 (636)
                      .|.+||+|+....... ...|.++ .  ++++..|-+.||.+++.+|...|+.+..
T Consensus        82 aG~~VIvD~v~~~~~~l~d~l~~~L~--~~~vl~VgV~Cpleil~~RE~~RgDR~~  135 (174)
T PF07931_consen   82 AGNNVIVDDVFLGPRWLQDCLRRLLA--GLPVLFVGVRCPLEILERRERARGDRPI  135 (174)
T ss_dssp             TT-EEEEEE--TTTHHHHHHHHHHHT--TS-EEEEEEE--HHHHHHHHHHHTSSST
T ss_pred             CCCCEEEecCccCcHHHHHHHHHHhC--CCceEEEEEECCHHHHHHHHHhcCCcch
Confidence            9999999997777664 4555455 4  4667788889999999999999998643

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2

Probab=98.83  E-value=4.2e-08  Score=99.28  Aligned_cols=131  Identities=17%  Similarity=0.221  Sum_probs=79.6

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhcCCCC---------C--c----------HHHHHHHHH
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKS---------G--T----------KVQCLTSAS   72 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir~~~~---------~--~----------~~~~~~~~~   72 (636)
                      ...+.+|+|+|+||.|||++|++|.+-+.   ....+++...+|....         .  .          ...+++.+.
T Consensus         9 ~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a~~~l~dl~   88 (222)
T PF01591_consen    9 HAGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIAKEALEDLI   88 (222)
T ss_dssp             ----EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHHHHHHHHHH
Confidence            45678999999999999999999997653   4455666555542110         0  0          112345566


Q ss_pred             HHHh--CCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccccc-CCCCCCChHHHHHHHHhh
Q 006654           73 SALK--KGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHE-GNLQGGKAAAVVNRMLQK  147 (636)
Q Consensus        73 ~~L~--~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~-~~~~~~vp~evi~rm~~~  147 (636)
                      ..|.  .|..-|+|+||.+.+.|+.+.+. .+.+..+.+|..-++++.+++++..+.... ....+-.++++++.+.++
T Consensus        89 ~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~spDY~~~~~e~A~~Df~~R  167 (222)
T PF01591_consen   89 EWLQEEGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNIREKKQNSPDYKGMDPEEAIEDFKKR  167 (222)
T ss_dssp             HHHHTS--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHHHTTSGGGTTS-HHHHHHHHHHH
T ss_pred             HHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHH
Confidence            6776  34567999999999999999999 877877666666788888898888776542 112234556666665544

7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....

>PRK05541 adenylylsulfate kinase; Provisional

Probab=98.83  E-value=1.5e-08  Score=98.27  Aligned_cols=104  Identities=16%  Similarity=0.116  Sum_probs=69.7

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhcCCC--CC--cHHH-----HHHHHHH-HHhCCCeEEEe
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGK--SG--TKVQ-----CLTSASS-ALKKGKSVFLD   84 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir~~~--~~--~~~~-----~~~~~~~-~L~~G~~VIID   84 (636)
                      .+|.+|+++|+|||||||+|+.|++.+.   ..+..++.|.++...  .+  ....     ....+.+ ....|..||+|
T Consensus         5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~VI~~   84 (176)
T PRK05541          5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILGHYGYDKQSRIEMALKRAKLAKFLADQGMIVIVT   84 (176)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            4677999999999999999999998775   235678888886421  11  1111     1122222 33678899999


Q ss_pred             CCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHh
Q 006654           85 RCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVK  124 (636)
Q Consensus        85 ~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~  124 (636)
                      +++...+.+..+..+   .....+|||++|.+++.+|...
T Consensus        85 ~~~~~~~~~~~~~~~---~~~~~~v~l~~~~e~~~~R~~~  121 (176)
T PRK05541         85 TISMFDEIYAYNRKH---LPNYFEVYLKCDMEELIRRDQK  121 (176)
T ss_pred             eCCcHHHHHHHHHhh---cCCeEEEEEeCCHHHHHHhchh
Confidence            987655444444333   1123578999999999999753

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.82  E-value=4.1e-08  Score=113.97  Aligned_cols=105  Identities=27%  Similarity=0.293  Sum_probs=81.3

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCCCC----cH-------HHHHHHHHHHHhCCCeE
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSG----TK-------VQCLTSASSALKKGKSV   81 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~~~----~~-------~~~~~~~~~~L~~G~~V   81 (636)
                      ...+|.+|+|+|+|||||||+|+.|++.+   +..+.+++.|.++.....    +.       ..+...+...+..|..|
T Consensus       456 ~~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~~~~~~~~r~~~~~~l~~~a~~~~~~G~~V  535 (632)
T PRK05506        456 KGQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDLGFSDADRVENIRRVAEVARLMADAGLIV  535 (632)
T ss_pred             hCCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence            34468999999999999999999999886   334688999999864321    11       12224455566889999


Q ss_pred             EEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHH
Q 006654           82 FLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRS  122 (636)
Q Consensus        82 IID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~  122 (636)
                      |+|.++..+..|..+.++ ...  .+.++||++|.++|.+|.
T Consensus       536 ivda~~~~~~~R~~~r~l~~~~--~~~~v~L~~~~e~~~~R~  575 (632)
T PRK05506        536 LVSFISPFREERELARALHGEG--EFVEVFVDTPLEVCEARD  575 (632)
T ss_pred             EEECCCCCHHHHHHHHHhcccC--CeEEEEECCCHHHHHhhC
Confidence            999999999999888777 543  567899999999999995

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=98.82  E-value=3.9e-08  Score=95.95  Aligned_cols=136  Identities=15%  Similarity=0.220  Sum_probs=90.0

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEee--------------------hhhhc----CCCCCcHH--------H
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARIC--------------------QDTIN----KGKSGTKV--------Q   66 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is--------------------~D~ir----~~~~~~~~--------~   66 (636)
                      +..|++|.||+|+||||+.++|.+..+ ....|+                    .+.+.    .+.+..|.        .
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~-l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYGT   81 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDDK-LRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYGT   81 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhcC-eEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCcccC
Confidence            578999999999999999999998874 222233                    12111    11111111        1


Q ss_pred             HHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEE-eCCHHHHHHHHHhcccccCCCCCCChHHHHHHH
Q 006654           67 CLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVL-DLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRM  144 (636)
Q Consensus        67 ~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~L-d~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm  144 (636)
                      ....+...+..|+.||+|-      ..+....+ +..+ .+..|++ .++.+++.+|+..|+.       +..+.+-+||
T Consensus        82 ~~~~ve~~~~~G~~vildI------d~qGa~qvk~~~p-~~v~IFi~pPs~eeL~~RL~~Rgt-------ds~e~I~~Rl  147 (191)
T COG0194          82 SREPVEQALAEGKDVILDI------DVQGALQVKKKMP-NAVSIFILPPSLEELERRLKGRGT-------DSEEVIARRL  147 (191)
T ss_pred             cHHHHHHHHhcCCeEEEEE------ehHHHHHHHHhCC-CeEEEEEcCCCHHHHHHHHHccCC-------CCHHHHHHHH
Confidence            2356778899999999998      55555556 4554 4444555 5667999999999987       4666777777


Q ss_pred             HhhhcCCCccCCccEEEEeCChhHH
Q 006654          145 LQKKELPKLSEGFSRITLCQNENDV  169 (636)
Q Consensus       145 ~~~fe~P~~~Egfd~Viii~~~~~v  169 (636)
                      .+...+-.....|+.+++-++.+.+
T Consensus       148 ~~a~~Ei~~~~~fdyvivNdd~e~a  172 (191)
T COG0194         148 ENAKKEISHADEFDYVIVNDDLEKA  172 (191)
T ss_pred             HHHHHHHHHHHhCCEEEECccHHHH
Confidence            7766555555668988666554443

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=98.80  E-value=3.4e-08  Score=112.54  Aligned_cols=137  Identities=12%  Similarity=0.122  Sum_probs=84.4

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC-c------------HHHHHHHHHHHHhCCCeEEEe
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-T------------KVQCLTSASSALKKGKSVFLD   84 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~-~------------~~~~~~~~~~~L~~G~~VIID   84 (636)
                      .....|+|+|+|||||||+++.|++.++.+  .+|.|.+.+...+ +            ++++...+.+.+....+.||.
T Consensus         4 ~~~~~i~LiG~~GaGKttvg~~LA~~L~~~--fiD~D~~ie~~~g~si~eif~~~Ge~~FR~~E~~~l~~~~~~~~~VIs   81 (542)
T PRK14021          4 TRRPQAVIIGMMGAGKTRVGKEVAQMMRLP--FADADVEIEREIGMSIPSYFEEYGEPAFREVEADVVADMLEDFDGIFS   81 (542)
T ss_pred             CCCccEEEECCCCCCHHHHHHHHHHHhCCC--EEEchHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence            345679999999999999999999999944  5777766433222 1            122223333333322344554


Q ss_pred             C---CCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCccEE
Q 006654           85 R---CNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRI  160 (636)
Q Consensus        85 ~---tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd~V  160 (636)
                      .   ....++.|..+.++ ++.+.   +|||+.|.+.+.+|+..+..+|...  ..+.+.++.++++. .|. ++.+.++
T Consensus        82 ~GGG~v~~~~n~~~L~~~~~~~g~---vv~L~~~~~~l~~Rl~~~~~RPll~--~~~~~~~~~l~~~R-~~~-Y~~~Ad~  154 (542)
T PRK14021         82 LGGGAPMTPSTQHALASYIAHGGR---VVYLDADPKEAMERANRGGGRPMLN--GDANKRWKKLFKQR-DPV-FRQVANV  154 (542)
T ss_pred             CCCchhCCHHHHHHHHHHHhcCCE---EEEEECCHHHHHHHHhCCCCCCCCC--CCcHHHHHHHHHHH-HHH-HHhhCCE
Confidence            3   46677788877666 66665   8899999999999987655444321  12234445554432 333 3444455


Q ss_pred             EEe
Q 006654          161 TLC  163 (636)
Q Consensus       161 iii  163 (636)
                      .+.
T Consensus       155 ~i~  157 (542)
T PRK14021        155 HVH  157 (542)
T ss_pred             EEE
Confidence            443

>PRK03839 putative kinase; Provisional

Probab=98.79  E-value=2.3e-08  Score=97.46  Aligned_cols=91  Identities=21%  Similarity=0.192  Sum_probs=60.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCC-CC----c-----HHHHHHHHHHHHhCCCeEEEeCCCCCHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK-SG----T-----KVQCLTSASSALKKGKSVFLDRCNLERE   91 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~-~~----~-----~~~~~~~~~~~L~~G~~VIID~tn~~~~   91 (636)
                      +|+|+|+|||||||+|+.|++.++  +.+++.|.+.... .+    .     ...+...+.+. ..+..+|+|+.+.   
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~--~~~id~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~vIidG~~~---   75 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLG--YEYVDLTEFALKKGIGEEKDDEMEIDFDKLAYFIEEE-FKEKNVVLDGHLS---   75 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC--CcEEehhhhhhhcCCcccCChhhhcCHHHHHHHHHHh-ccCCCEEEEeccc---
Confidence            589999999999999999999998  6667776653211 11    1     11222233222 2356799999421   


Q ss_pred             HHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           92 QRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        92 ~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                         .   +...+.   +++|+++.+++.+|+..|..
T Consensus        76 ---~---l~~~~~---vi~L~~~~~~~~~Rl~~R~~  102 (180)
T PRK03839         76 ---H---LLPVDY---VIVLRAHPKIIKERLKERGY  102 (180)
T ss_pred             ---c---ccCCCE---EEEEECCHHHHHHHHHHcCC
Confidence               1   122232   78999999999999998853

>PHA02595 tk

Probab=98.73  E-value=6.2e-08  Score=92.86  Aligned_cols=117  Identities=15%  Similarity=0.072  Sum_probs=84.8

Q ss_pred             EEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc--CCCCCCcEEEecCCCCCCCC
Q 006654          344 KFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA--KSLYPGNSVIVPLPSTSPLC  421 (636)
Q Consensus       344 ~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~--~~~~~G~avvT~l~~~~~~~  421 (636)
                      .+..++|||++...   ...++|||++|..+. +|+|||.+|.++.+ ++.++.++..  +..+.|++.+.+.      .
T Consensus         2 ~i~~v~GDl~~~~~---~~~~~i~h~~N~~g~-mG~GIA~~~k~~~P-~~~~~y~~~~~~~~~~lG~~~~~~~------~   70 (154)
T PHA02595          2 IVDYIKGDIVALFL---QGKGNIAHGCNCFHT-MGSGIAGQLAKAFP-QILEADKLTTEGDVEKLGTFSVWEK------Y   70 (154)
T ss_pred             eEEEECCccccccc---CCCceEEEeeCCCCc-CChHHHHHHHHHcC-hHHHHHHHHhcCCccccceEEEEEe------e
Confidence            37789999988731   125699999999999 99999999999995 5666655542  4567899977431      1


Q ss_pred             CCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH------HHhhccccCCCCC
Q 006654          422 GREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF------LSIVRSQEKLSKG  480 (636)
Q Consensus       422 ~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a------~siaf~~~~~~~~  480 (636)
                      +..+-++|+|..+- |+...+        -..+.|++|++++.+.+      .|||+|.||.+.+
T Consensus        71 ~~~~~~~I~nl~tq-~~~~~~--------~~y~ai~~~l~~l~~~~~~~~~~~sIa~P~IG~Glg  126 (154)
T PHA02595         71 VGGHKAYCFNLYTQ-FDPGPN--------LEYSALMNCFEELNEVFEGTLFKPTIYIPRIGAGIA  126 (154)
T ss_pred             ccCCCEEEEEEecc-CCCCCC--------CcHHHHHHHHHHHHHHHHhcCCCcEEeeCCCCccCC
Confidence            22334799999776 755432        12567888888887765      5899999997743

4 hypothetical protein; Provisional

>KOG4622 consensus Predicted nucleotide kinase [General function prediction only]

Probab=98.72  E-value=1.8e-08  Score=98.09  Aligned_cols=133  Identities=20%  Similarity=0.364  Sum_probs=98.3

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcC----CCeEEeehhhhcCCCC-----------CcHHHHHHHHHHHHh---------
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSA----RPWARICQDTINKGKS-----------GTKVQCLTSASSALK---------   76 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~----~~~~~Is~D~ir~~~~-----------~~~~~~~~~~~~~L~---------   76 (636)
                      .++.++|.|+||||||++++.-...    +...|++-|++.-...           +..+-.++.+..+..         
T Consensus         2 ~LlaliGiPAaGKSs~c~~ilga~aaLrvrhi~hlcfDDFlmdaTpSaD~a~keqRgr~~~~iEk~ISaiqedtdwppqv   81 (291)
T KOG4622|consen    2 ALLALIGIPAAGKSSFCRKILGAHAALRVRHIEHLCFDDFLMDATPSADKAAKEQRGRFECHIEKCISAIQEDTDWPPQV   81 (291)
T ss_pred             ceeeeecCcccchhHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcCcchhhhHHHHhchHHHHHHHHHHHHhcccCCCchh
Confidence            3688999999999999999864322    2245667777752211           111112233333333         


Q ss_pred             ----------CCCe-EEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHH
Q 006654           77 ----------KGKS-VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRM  144 (636)
Q Consensus        77 ----------~G~~-VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm  144 (636)
                                .|+. +++|+..+.+..|..+.++ +.+|+.+-.||+......|++|+..|....     ..+.++++.|
T Consensus        82 rrisssgdynsgrhiilcdD~FY~kSMR~k~~ki~kd~GciFG~Iflas~ide~LqaNS~Rsda~-----k~~~dtiRki  156 (291)
T KOG4622|consen   82 RRISSSGDYNSGRHIILCDDIFYLKSMRHKFQKIAKDHGCIFGIIFLASGIDEALQANSHRSDAE-----KQKNDTIRKI  156 (291)
T ss_pred             eeccccCCcCCCceEEEechHHHHHHhhhHHHHHHHHcCCeeeeeehhhhHHHHHHhccccccch-----hCccHHHHHH
Confidence                      2333 6778878888999999999 999999999999999999999999998743     4778999999


Q ss_pred             HhhhcCCCccCCcc
Q 006654          145 LQKKELPKLSEGFS  158 (636)
Q Consensus       145 ~~~fe~P~~~Egfd  158 (636)
                      .+++|.|...|.|.
T Consensus       157 ~EklE~PD~~ea~e  170 (291)
T KOG4622|consen  157 FEKLEDPDEIEALE  170 (291)
T ss_pred             HHhccCccHHHHHH
Confidence            99999999877663

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=98.70  E-value=1.6e-07  Score=90.63  Aligned_cols=99  Identities=19%  Similarity=0.174  Sum_probs=64.3

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCc----------H---HHHHHHHHHHHhCCCeEEEeCC-
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT----------K---VQCLTSASSALKKGKSVFLDRC-   86 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~----------~---~~~~~~~~~~L~~G~~VIID~t-   86 (636)
                      ..|+|+|+|||||||+|+.|++.++  +.+++.|.+.....+.          +   ......+.+.+..+..||.-+. 
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~lg--~~~~d~D~~~~~~~g~~~~~~~~~~g~~~~~~~e~~~~~~~~~~~~vi~~ggg   80 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQALG--YRFVDTDQWLQSTSNMTVAEIVEREGWAGFRARESAALEAVTAPSTVIATGGG   80 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC--CCEEEccHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHhcCCCeEEECCCC
Confidence            4588999999999999999999998  5567887765322211          1   1112333345555444444332 


Q ss_pred             -CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           87 -NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        87 -n~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                       .+....|..+   +..+.   +|||++|.+++.+|+..|..
T Consensus        81 ~vl~~~~~~~l---~~~~~---~v~l~~~~~~~~~Rl~~r~~  116 (171)
T PRK03731         81 IILTEENRHFM---RNNGI---VIYLCAPVSVLANRLEANPE  116 (171)
T ss_pred             ccCCHHHHHHH---HhCCE---EEEEECCHHHHHHHHccccc
Confidence             3445555433   33343   88999999999999998754

>PRK08356 hypothetical protein; Provisional

Probab=98.70  E-value=5.3e-07  Score=89.28  Aligned_cols=99  Identities=13%  Similarity=0.203  Sum_probs=66.6

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhh-h----cCC-----C-------C----Cc---H----------H
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT-I----NKG-----K-------S----GT---K----------V   65 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~-i----r~~-----~-------~----~~---~----------~   65 (636)
                      ..+|+++|+|||||||+|+.|. +++  +.+|+..+ +    +..     +       .    ..   +          .
T Consensus         5 ~~~i~~~G~~gsGK~t~a~~l~-~~g--~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~   81 (195)
T PRK08356          5 KMIVGVVGKIAAGKTTVAKFFE-EKG--FCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGED   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHH-HCC--CcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcH
Confidence            3578999999999999999995 566  55666532 1    111     0       0    00   0          1


Q ss_pred             HHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           66 QCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        66 ~~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      ...+.+.+.+.....|++|+. .+..++..+...   +  ..+|++++|.+++.+|+..|..
T Consensus        82 ~~~~~~~~~~~~~~~ividG~-r~~~q~~~l~~~---~--~~vi~l~~~~~~~~~Rl~~R~~  137 (195)
T PRK08356         82 ILIRLAVDKKRNCKNIAIDGV-RSRGEVEAIKRM---G--GKVIYVEAKPEIRFERLRRRGA  137 (195)
T ss_pred             HHHHHHHHHhccCCeEEEcCc-CCHHHHHHHHhc---C--CEEEEEECCHHHHHHHHHhcCC
Confidence            112344455544557999997 888888776433   1  1478999999999999999875

>PRK06696 uridine kinase; Validated

Probab=98.68  E-value=1.8e-07  Score=94.67  Aligned_cols=103  Identities=21%  Similarity=0.259  Sum_probs=66.4

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCC-----------CC------cHHHHHHHHHHHH-
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGK-----------SG------TKVQCLTSASSAL-   75 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~-----------~~------~~~~~~~~~~~~L-   75 (636)
                      .+.|.+|.+.|+|||||||+|++|++.+   +..+.+++.|.+...+           .+      .+..+...+...+ 
T Consensus        19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~~l~   98 (223)
T PRK06696         19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPLG   98 (223)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHHHcCCCChhhcCccccCHHHHHHHHHhhcc
Confidence            4578999999999999999999999988   4456777887774221           00      0111111111111 


Q ss_pred             ---------------------------hCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           76 ---------------------------KKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        76 ---------------------------~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                                                 ..+..||+|+..+.......+.+        ..|++++|.+++.+|...|..
T Consensus        99 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~~~~~~~~d--------~~i~v~~~~e~~~~R~~~Rd~  169 (223)
T PRK06696         99 PNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLRPELRDLWD--------YKIFLDTDFEVSRRRGAKRDT  169 (223)
T ss_pred             CCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhhhhHHhhCC--------EEEEEECCHHHHHHHHHHhhh
Confidence                                       11234777885544333322222        378999999999999999974

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=98.68  E-value=2.7e-07  Score=92.01  Aligned_cols=105  Identities=20%  Similarity=0.238  Sum_probs=72.6

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCC--------------------C--cH------------
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS--------------------G--TK------------   64 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~--------------------~--~~------------   64 (636)
                      .+.+|++.|+|||||||+|+.|+.+++.. ..+..|.+|+...                    +  ..            
T Consensus         2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~-~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~   80 (197)
T PRK12339          2 ESTIHFIGGIPGVGKTSISGYIARHRAID-IVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQAR   80 (197)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCe-EEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHH
Confidence            46799999999999999999999998832 3566676652100                    0  00            


Q ss_pred             ---HHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeC-CHHHHHHHHHhccccc
Q 006654           65 ---VQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDL-PAKLCISRSVKRIEHE  129 (636)
Q Consensus        65 ---~~~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~-p~e~l~~R~~~R~~~~  129 (636)
                         ..+...+.+.+.+|.++|+|++++.+..+...   ...+  +.++++.+ +.+++.+|+..|....
T Consensus        81 ~v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~---~~~~--v~~i~l~v~d~e~lr~Rl~~R~~~~  144 (197)
T PRK12339         81 AIMPGINRVIRRALLNGEDLVIESLYFHPPMIDEN---RTNN--IRAFYLYIRDAELHRSRLADRINYT  144 (197)
T ss_pred             HHHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHH---HhcC--eEEEEEEeCCHHHHHHHHHHHhhcc
Confidence               01224567788999999999999888777432   1122  23445544 6788889999998653

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.68  E-value=5.9e-07  Score=87.24  Aligned_cols=113  Identities=15%  Similarity=0.173  Sum_probs=66.4

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcCCC--eEEeeh------------------hhhc----CCCCCcH-------HHHHH
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSARP--WARICQ------------------DTIN----KGKSGTK-------VQCLT   69 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~--~~~Is~------------------D~ir----~~~~~~~-------~~~~~   69 (636)
                      .+++++|+|||||||+++.|+..++..  ..++..                  +.+.    .+.+...       .-...
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIPA   81 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccChH
Confidence            478999999999999999998876521  111111                  1110    1101000       00112


Q ss_pred             HHHHHHhCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHh
Q 006654           70 SASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ  146 (636)
Q Consensus        70 ~~~~~L~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~  146 (636)
                      .+...+..|..||+|+.   ...+..+.+.   ...+.+|+|++|.+++.+|+..|..       ..++.+..++.+
T Consensus        82 ~i~~~~~~g~~vv~~g~---~~~~~~~~~~---~~~~~~i~l~~~~~~~~~Rl~~R~~-------~~~~~~~~rl~~  145 (179)
T TIGR02322        82 EIDQWLEAGDVVVVNGS---RAVLPEARQR---YPNLLVVNITASPDVLAQRLAARGR-------ESREEIEERLAR  145 (179)
T ss_pred             HHHHHHhcCCEEEEECC---HHHHHHHHHH---CCCcEEEEEECCHHHHHHHHHHcCC-------CCHHHHHHHHHH
Confidence            34456678889999984   2222222222   1134688999999999999999854       234455555543

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK14738 gmk guanylate kinase; Provisional

Probab=98.65  E-value=1.5e-07  Score=94.24  Aligned_cols=122  Identities=13%  Similarity=0.105  Sum_probs=69.6

Q ss_pred             ccccCccEEEEEEccCCCcHHHHHHHHHHHcCCC--------------------eEEeehhhhc----CCCCCcH----H
Q 006654           14 EEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARP--------------------WARICQDTIN----KGKSGTK----V   65 (636)
Q Consensus        14 ~~~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~--------------------~~~Is~D~ir----~~~~~~~----~   65 (636)
                      +..+..+.+|+|+|||||||||+++.|.+.....                    +..++.+.+.    .+.+..+    .
T Consensus         7 ~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g   86 (206)
T PRK14738          7 FNKPAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYG   86 (206)
T ss_pred             cCCCCCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcC
Confidence            3467789999999999999999999997643210                    1111222211    1111100    0


Q ss_pred             ----HHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEE-eCCHHHHHHHHHhcccccCCCCCCChHHH
Q 006654           66 ----QCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVL-DLPAKLCISRSVKRIEHEGNLQGGKAAAV  140 (636)
Q Consensus        66 ----~~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~L-d~p~e~l~~R~~~R~~~~~~~~~~vp~ev  140 (636)
                          .-...+...+++|+.+|+|...   ..+..   +++....+.++++ .++.+++.+|+..|..+       ...++
T Consensus        87 ~~YGt~~~~i~~~~~~g~~vi~~~~~---~g~~~---l~~~~pd~~~if~~pps~e~l~~Rl~~R~~~-------~~~~~  153 (206)
T PRK14738         87 NYYGVPKAPVRQALASGRDVIVKVDV---QGAAS---IKRLVPEAVFIFLAPPSMDELTRRLELRRTE-------SPEEL  153 (206)
T ss_pred             ceecCCHHHHHHHHHcCCcEEEEcCH---HHHHH---HHHhCCCeEEEEEeCCCHHHHHHHHHHcCCC-------CHHHH
Confidence                0114567788999999998722   22222   2222223333333 35577899999998753       23455


Q ss_pred             HHHHHhhh
Q 006654          141 VNRMLQKK  148 (636)
Q Consensus       141 i~rm~~~f  148 (636)
                      .+++...+
T Consensus       154 ~~Rl~~~~  161 (206)
T PRK14738        154 ERRLATAP  161 (206)
T ss_pred             HHHHHHHH
Confidence            56665544

>PRK05480 uridine/cytidine kinase; Provisional

Probab=98.63  E-value=7.2e-07  Score=89.03  Aligned_cols=119  Identities=26%  Similarity=0.370  Sum_probs=74.1

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcC-CCeEEeehhhhcCCC------------CC-----cHHHHHHHHHHHHhCC-
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA-RPWARICQDTINKGK------------SG-----TKVQCLTSASSALKKG-   78 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~-~~~~~Is~D~ir~~~------------~~-----~~~~~~~~~~~~L~~G-   78 (636)
                      .++.+|.|+|++|||||||++.|.+.++ ..+..+++|.+....            ..     ....+.+.+ ..+..| 
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~l~~~~   82 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEHL-KALKAGK   82 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHHH-HHHHcCC
Confidence            4688999999999999999999999884 235667887764211            00     112222222 222222 


Q ss_pred             ------------------------CeEEEeCCCCCH-HHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCC
Q 006654           79 ------------------------KSVFLDRCNLER-EQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQ  133 (636)
Q Consensus        79 ------------------------~~VIID~tn~~~-~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~  133 (636)
                                              ..+|+|+..+.. .....+.++        .|++++|.+++++|...|..+..   
T Consensus        83 ~v~~p~~d~~~~~~~~~~~~~~~~~~vivEg~~l~~~~~~~~~~d~--------~I~v~~~~~~~~~R~~~Rd~~~r---  151 (209)
T PRK05480         83 AIEIPVYDYTEHTRSKETIRVEPKDVIILEGILLLEDERLRDLMDI--------KIFVDTPLDIRLIRRLKRDVNER---  151 (209)
T ss_pred             ccccCcccccccccCCCeEEeCCCCEEEEEeehhcCchhHhhhhce--------eEEEeCChhHHHHHHHhhcchhc---
Confidence                                    137778754432 222223222        78999999999999999975332   


Q ss_pred             CCChHHHHHHHHhhh
Q 006654          134 GGKAAAVVNRMLQKK  148 (636)
Q Consensus       134 ~~vp~evi~rm~~~f  148 (636)
                      +...++++.++.++.
T Consensus       152 g~~~e~~~~~~~~~~  166 (209)
T PRK05480        152 GRSLESVINQYLSTV  166 (209)
T ss_pred             CCCHHHHHHHHHHhh
Confidence            135566666665543

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.63  E-value=8.7e-07  Score=85.95  Aligned_cols=101  Identities=19%  Similarity=0.184  Sum_probs=61.2

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcCCCeEE--------------------eehhhhc----CCCCC--------cHHHHH
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWAR--------------------ICQDTIN----KGKSG--------TKVQCL   68 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~--------------------Is~D~ir----~~~~~--------~~~~~~   68 (636)
                      .+|+|+|++||||||+++.|++.++..+..                    ++.+.+.    .+...        ......
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~   81 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTPK   81 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCcH
Confidence            478999999999999999999875421111                    1111111    00000        001113


Q ss_pred             HHHHHHHhCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           69 TSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        69 ~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      ..+...+.+|+.+|+|..      ...+..+ ...+..+.++++..+.+.+.+|+..|..
T Consensus        82 ~~i~~~~~~g~~vi~d~~------~~~~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~~  135 (180)
T TIGR03263        82 SPVEEALAAGKDVLLEID------VQGARQVKKKFPDAVSIFILPPSLEELERRLRKRGT  135 (180)
T ss_pred             HHHHHHHHCCCeEEEECC------HHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCC
Confidence            557788899999999973      2222233 3333334455557788999999998865

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=98.60  E-value=5.2e-08  Score=90.72  Aligned_cols=95  Identities=16%  Similarity=0.235  Sum_probs=60.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCC----------CcHHHHHHHHHHHHhCCCeEEEeCCCCCHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS----------GTKVQCLTSASSALKKGKSVFLDRCNLERE   91 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~----------~~~~~~~~~~~~~L~~G~~VIID~tn~~~~   91 (636)
                      +|+++|+|||||||+|+.|++.++  +.+++.|.+.....          ......+......+..+..+|+|+......
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~~--~~~~~~~~i~~e~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~Vidg~~~~~~   78 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKLG--LPYLDTGGIRTEEVGKLASEVAAIPEVRKALDERQRELAKKPGIVLEGRDIGTV   78 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC--CceeccccCCHHHHHHHHHHhcccHhHHHHHHHHHHHHhhCCCEEEEeeeeeeE
Confidence            478999999999999999999998  44567664432110          011111223333355556799999432110


Q ss_pred             HHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           92 QRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        92 ~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                            .....   ..+|+|.+|.++..+|+.+|..
T Consensus        79 ------~~~~~---~~~i~l~~~~~~r~~R~~~r~~  105 (147)
T cd02020          79 ------VFPDA---DLKIFLTASPEVRAKRRAKQLQ  105 (147)
T ss_pred             ------EcCCC---CEEEEEECCHHHHHHHHHHHHH
Confidence                  01111   1378999999999999999754

>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.60  E-value=2.1e-07  Score=88.51  Aligned_cols=143  Identities=17%  Similarity=0.184  Sum_probs=99.0

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC---CCCc------HHHHHHHHHHHHhCCCeEEEeCCCCC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG---KSGT------KVQCLTSASSALKKGKSVFLDRCNLE   89 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~---~~~~------~~~~~~~~~~~L~~G~~VIID~tn~~   89 (636)
                      ||.+.++.|+.||||||+...+...+...+..+|.|.+..+   +..+      .+.....+...++.|.+++.+.|--.
T Consensus         1 m~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~i~p~~p~~~~i~A~r~ai~~i~~~I~~~~~F~~ETtLS~   80 (187)
T COG4185           1 MKRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQISPDNPTSAAIQAARVAIDRIARLIDLGRPFIAETTLSG   80 (187)
T ss_pred             CceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHcCCCcceEEeecc
Confidence            67899999999999999988766555545788999999633   1111      12234566677789999999986655


Q ss_pred             HHHHHHHHHh-CCCCCeEEEEEEeCCH-HHHHHHHHhcccccCCCCCCChHHHHHHHHh-hhcC-CCccCCccEEEEeCC
Q 006654           90 REQRTDFVKL-GGPEVDVHAVVLDLPA-KLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ-KKEL-PKLSEGFSRITLCQN  165 (636)
Q Consensus        90 ~~~R~~l~~l-~~~g~~v~vV~Ld~p~-e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~-~fe~-P~~~Egfd~Viii~~  165 (636)
                      ...++ +++. +..|+-+...|+-++. |+.++|+..|-...|+   .+|++.+++-+. ..+. +...+-.++..+.++
T Consensus        81 ~s~~~-~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GGH---~IpED~Ir~RY~rsle~l~~~l~l~dr~~IydN  156 (187)
T COG4185          81 PSILE-LIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGGH---DIPEDKIRRRYRRSLELLAQALTLADRATIYDN  156 (187)
T ss_pred             chHHH-HHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCCC---CCcHHHHHHHHHHHHHHHHHHHhhcceeEEecC
Confidence            55554 4455 8889988777776654 6889999999887776   899988876554 3332 222333455555444

>cd03330 Macro_2 Macro domain, Unknown family 2

Probab=98.60  E-value=1.3e-08  Score=94.83  Aligned_cols=104  Identities=9%  Similarity=0.037  Sum_probs=76.4

Q ss_pred             ccCCCCCchhhHHHHHHHHhhcCCCCCCCCCCcccCCCCCCcccccccccccCcceecccccccchhhcccCChhhhhhh
Q 006654          189 SFGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVN  268 (636)
Q Consensus       189 c~~~~~~~~~v~~~i~k~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~l  268 (636)
                      ..+. +++..++.++++-+.+.+. ..+|.. .        .|.+.++.|.+..|.+.+..+.  ....+.+..++.+|+
T Consensus        30 Gva~-ai~~~~G~~~~~~~~~~~~-~~~G~~-~--------~t~~~~l~~k~Iih~~~~~~~~--~~~~~~l~~~~~~~l   96 (133)
T cd03330          30 GVAG-AIKRAGGSVIEREAVRKAP-IPVGEA-V--------ITGAGDLPARYVIHAATMEEPG--RSSEESVRKATRAAL   96 (133)
T ss_pred             cHHH-HHHHHhCHHHHHHHHHcCC-CCCCeE-E--------EEeCCCCCCCEEEEeCCCCCCC--CCHHHHHHHHHHHHH
Confidence            3444 6777777777776665543 334541 1        1344566677777776554433  333457888999999


Q ss_pred             cccCCCCCCccccccCccCCCCCChHHHHHHHHHHHH
Q 006654          269 QNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVE  305 (636)
Q Consensus       269 ~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~  305 (636)
                      ..+++++++|||||+|+||++|||.++|+++|.++++
T Consensus        97 ~~a~~~~~~sIA~P~igtG~~g~~~~~~a~i~~~~i~  133 (133)
T cd03330          97 ALADELGIESVAFPAMGTGVGGLPKEDVARLMVEVIE  133 (133)
T ss_pred             HHHHHcCCCEEEECcccccCCCCCHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999873

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=98.59  E-value=8.9e-07  Score=86.37  Aligned_cols=151  Identities=17%  Similarity=0.186  Sum_probs=81.1

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeeh-------hhhc---CCC----CCcH-H---------H-HHHHHH
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ-------DTIN---KGK----SGTK-V---------Q-CLTSAS   72 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~-------D~ir---~~~----~~~~-~---------~-~~~~~~   72 (636)
                      .+|++.|++||||||+++.|++.+   |..+..+..       ..++   ...    .... .         . ....+.
T Consensus         1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~   80 (200)
T cd01672           1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQHVEEVIK   80 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            378999999999999999999887   322322221       1221   111    1111 0         0 112233


Q ss_pred             HHHhCCCeEEEeCCCCCH------------HHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHH
Q 006654           73 SALKKGKSVFLDRCNLER------------EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAA  139 (636)
Q Consensus        73 ~~L~~G~~VIID~tn~~~------------~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~e  139 (636)
                      ..+..|..||+|...+..            .....+..+ .....+..+++|++|.+++.+|+..|......  .....+
T Consensus        81 ~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~--~~~~~~  158 (200)
T cd01672          81 PALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDDRD--EQEGLE  158 (200)
T ss_pred             HHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchh--hhhhHH
Confidence            456788899999644332            222223333 33223446899999999999999999763210  022344


Q ss_pred             HHHHHHhhhcCCCccCCccEEEEeCChhHHHHHHH
Q 006654          140 VVNRMLQKKELPKLSEGFSRITLCQNENDVQAALD  174 (636)
Q Consensus       140 vi~rm~~~fe~P~~~Egfd~Viii~~~~~vdaiv~  174 (636)
                      ..+++...++......+. .+.+++....++.+..
T Consensus       159 ~~~~~~~~y~~~~~~~~~-~~~~id~~~~~e~i~~  192 (200)
T cd01672         159 FHERVREGYLELAAQEPE-RIIVIDASQPLEEVLA  192 (200)
T ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEeCCCCHHHHHH
Confidence            444444444332211122 3445555444554443

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>smart00072 GuKc Guanylate kinase homologues

Probab=98.59  E-value=4.2e-07  Score=89.22  Aligned_cols=133  Identities=12%  Similarity=0.146  Sum_probs=75.5

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCe--EEee-------------------hhhhc----CCCCCc--------HHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPW--ARIC-------------------QDTIN----KGKSGT--------KVQ   66 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~--~~Is-------------------~D~ir----~~~~~~--------~~~   66 (636)
                      +++|+|+||+||||+|+++.|.+.++..+  ++..                   .+.+.    .+.+..        .-.
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt   81 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT   81 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence            46899999999999999999998863112  1111                   11110    110000        001


Q ss_pred             HHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEe-CCHHHHHHHHHhcccccCCCCCCChHHHHHHHH
Q 006654           67 CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLD-LPAKLCISRSVKRIEHEGNLQGGKAAAVVNRML  145 (636)
Q Consensus        67 ~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld-~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~  145 (636)
                      ....+.+.+..|+.+|+|..      ...+..+++......+|++. .+.+++.+|+..|..       ..++.+-+|+.
T Consensus        82 ~~~~i~~~~~~~~~~ild~~------~~~~~~l~~~~~~~~vIfi~~~s~~~l~~rl~~R~~-------~~~~~i~~rl~  148 (184)
T smart00072       82 SKETIRQVAEQGKHCLLDID------PQGVKQLRKAQLYPIVIFIAPPSSEELERRLRGRGT-------ETAERIQKRLA  148 (184)
T ss_pred             CHHHHHHHHHcCCeEEEEEC------HHHHHHHHHhCCCcEEEEEeCcCHHHHHHHHHhcCC-------CCHHHHHHHHH
Confidence            12456777888999999994      22223331112334577886 556779999998865       23444555555


Q ss_pred             hhhcCCCccCCccEEEEeCC
Q 006654          146 QKKELPKLSEGFSRITLCQN  165 (636)
Q Consensus       146 ~~fe~P~~~Egfd~Viii~~  165 (636)
                      ........+..|+.++..++
T Consensus       149 ~a~~~~~~~~~fd~~I~n~~  168 (184)
T smart00072      149 AAQKEAQEYHLFDYVIVNDD  168 (184)
T ss_pred             HHHHHHhhhccCCEEEECcC
Confidence            32222222345777655443

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=98.58  E-value=1.1e-07  Score=85.97  Aligned_cols=94  Identities=27%  Similarity=0.394  Sum_probs=54.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-c-CCCC----Cc---HH---HHHHHHHHHHh---CCCeEEEeCC
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-N-KGKS----GT---KV---QCLTSASSALK---KGKSVFLDRC   86 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r-~~~~----~~---~~---~~~~~~~~~L~---~G~~VIID~t   86 (636)
                      +|+++|+|||||||+|+.|++.++  +.+++.|++ . ..+.    ..   ..   .........+.   .+..+|+|+.
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~--~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ii~g~   78 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLG--FPVISMDDLIREPGWIERDDDEREYIDADIDLLDDILEQLQNKPDNDNWIIDGS   78 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT--CEEEEEHHHHCCGTHCHGCTTCCHHHHHHHHHHHHHHHHHHETTT--EEEEECC
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHC--CeEEEecceEEeccccccCcchhhHHHHHHHHHHHHHHhhhccCCCCeEEEeCC
Confidence            589999999999999999999998  677787774 2 1111    11   11   12233333332   4567999994


Q ss_pred             CCCHHH--HHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 006654           87 NLEREQ--RTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRI  126 (636)
Q Consensus        87 n~~~~~--R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~  126 (636)
                      .. ...  +..+.        ..++++..|.+.+..|..+|.
T Consensus        79 ~~-~~~~~~~~~~--------~~~i~l~~~~~~~~~~~~~R~  111 (121)
T PF13207_consen   79 YE-SEMEIRLPEF--------DHVIYLDAPDEECRERRLKRR  111 (121)
T ss_dssp             SC-HCCHSCCHHG--------GCEEEEEEEEHHHHHHHHHHH
T ss_pred             Cc-cchhhhhhcC--------CEEEEEECCCHHHHHHHHHHH
Confidence            32 211  11111        136777777765555555553

...

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.57  E-value=6.2e-07  Score=88.90  Aligned_cols=104  Identities=19%  Similarity=0.241  Sum_probs=62.6

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEE--------------------eehhhhcC----CCC-------Cc-HHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWAR--------------------ICQDTINK----GKS-------GT-KVQ   66 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~--------------------Is~D~ir~----~~~-------~~-~~~   66 (636)
                      +..+|+|+|++||||||+++.|+..++..+..                    ++.+.+..    +.+       +. ...
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~   83 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYGT   83 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCccccC
Confidence            56789999999999999999999886511111                    11111110    000       00 001


Q ss_pred             HHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           67 CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        67 ~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      ....+...+..|..+|+|...   .....+.+.  .+..+.++++..+.+++.+|+..|..
T Consensus        84 ~~~~i~~~l~~g~~vi~dl~~---~g~~~l~~~--~~~~~~I~i~~~s~~~l~~Rl~~R~~  139 (205)
T PRK00300         84 PRSPVEEALAAGKDVLLEIDW---QGARQVKKK--MPDAVSIFILPPSLEELERRLRGRGT  139 (205)
T ss_pred             cHHHHHHHHHcCCeEEEeCCH---HHHHHHHHh--CCCcEEEEEECcCHHHHHHHHHhcCC
Confidence            135577888999999999732   222222222  22233455556778999999999865

>PRK08233 hypothetical protein; Provisional

Probab=98.56  E-value=3.4e-07  Score=88.59  Aligned_cols=97  Identities=12%  Similarity=0.209  Sum_probs=57.6

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCC-CeEEeehhhhcCC--------CC---C-----cHHHHHHHHHHHHhCC--Ce
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSAR-PWARICQDTINKG--------KS---G-----TKVQCLTSASSALKKG--KS   80 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~-~~~~Is~D~ir~~--------~~---~-----~~~~~~~~~~~~L~~G--~~   80 (636)
                      +.+|++.|+|||||||+|+.|++.++. ...+.+  .++..        +.   .     ....+...+...+...  ..
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   80 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHKLKNSKALYFD--RYDFDNCPEDICKWIDKGANYSEWVLTPLIKDIQELIAKSNVDY   80 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhCCCCceEEEC--CEEcccCchhhhhhhhccCChhhhhhHHHHHHHHHHHcCCCceE
Confidence            578999999999999999999998862 233333  33211        10   0     1112223444434333  23


Q ss_pred             EEEeCCCCCHH--HHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           81 VFLDRCNLERE--QRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        81 VIID~tn~~~~--~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      ||+|+ ++...  ....+.+        .+|+|++|.+++.+|...|..
T Consensus        81 vivd~-~~~~~~~~~~~~~d--------~~i~l~~~~~~~~~R~~~R~~  120 (182)
T PRK08233         81 IIVDY-PFAYLNSEMRQFID--------VTIFIDTPLDIAMARRILRDF  120 (182)
T ss_pred             EEEee-ehhhccHHHHHHcC--------EEEEEcCCHHHHHHHHHHHHh
Confidence            55565 43321  1222212        388999999999999888864

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=98.55  E-value=5.6e-07  Score=95.67  Aligned_cols=126  Identities=13%  Similarity=0.129  Sum_probs=72.4

Q ss_pred             cccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCc-------------HHHHH-HHHHHHHhCCCe
Q 006654           15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT-------------KVQCL-TSASSALKKGKS   80 (636)
Q Consensus        15 ~~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~-------------~~~~~-~~~~~~L~~G~~   80 (636)
                      .+..+...|+|+|+|||||||+++.|++.++.++  ++.|.......+.             ..... ..+.+.+.....
T Consensus       128 ~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~--id~D~~i~~~~G~~i~ei~~~~G~~~fr~~e~~~l~~ll~~~~~  205 (309)
T PRK08154        128 RRAARRRRIALIGLRGAGKSTLGRMLAARLGVPF--VELNREIEREAGLSVSEIFALYGQEGYRRLERRALERLIAEHEE  205 (309)
T ss_pred             hhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCE--EeHHHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHHHhhCCC
Confidence            4556778899999999999999999999999544  5766654322221             01111 223333443334


Q ss_pred             EEEeCC-C--CCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhh
Q 006654           81 VFLDRC-N--LEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK  148 (636)
Q Consensus        81 VIID~t-n--~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~f  148 (636)
                      +||... .  .....+.   .+...+   .+|||++|.+++.+|+..|..........-..+.++.+++..
T Consensus       206 ~VI~~Ggg~v~~~~~~~---~l~~~~---~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R  270 (309)
T PRK08154        206 MVLATGGGIVSEPATFD---LLLSHC---YTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILASR  270 (309)
T ss_pred             EEEECCCchhCCHHHHH---HHHhCC---EEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHH
Confidence            555442 2  1222222   231222   488999999999999998864211011122334555555444

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=98.55  E-value=2.7e-07  Score=86.81  Aligned_cols=112  Identities=21%  Similarity=0.333  Sum_probs=75.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh-hhhcCC-----C-------CCcHHHHHHHHHHHHhCCCeEEEeC--C
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINKG-----K-------SGTKVQCLTSASSALKKGKSVFLDR--C   86 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~-D~ir~~-----~-------~~~~~~~~~~~~~~L~~G~~VIID~--t   86 (636)
                      -|+++|-||+||||+|.+|++.++..  +|+- |.++++     +       ....+.+++.+...|..| +.|+|-  |
T Consensus         9 NILvtGTPG~GKstl~~~lae~~~~~--~i~isd~vkEn~l~~gyDE~y~c~i~DEdkv~D~Le~~m~~G-g~IVDyHgC   85 (176)
T KOG3347|consen    9 NILVTGTPGTGKSTLAERLAEKTGLE--YIEISDLVKENNLYEGYDEEYKCHILDEDKVLDELEPLMIEG-GNIVDYHGC   85 (176)
T ss_pred             CEEEeCCCCCCchhHHHHHHHHhCCc--eEehhhHHhhhcchhcccccccCccccHHHHHHHHHHHHhcC-CcEEeeccc
Confidence            47899999999999999999999944  4553 333221     1       112445677888888775 566776  3


Q ss_pred             CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhh
Q 006654           87 NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQK  147 (636)
Q Consensus        87 n~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~  147 (636)
                      .+-+   ++|.++        +++|.+|.+.|.+|+..|+-+.......+..+++.-..+.
T Consensus        86 d~Fp---erwfdl--------VvVLr~~~s~LY~RL~sRgY~e~Ki~eNiecEIfgv~~ee  135 (176)
T KOG3347|consen   86 DFFP---ERWFDL--------VVVLRTPNSVLYDRLKSRGYSEKKIKENIECEIFGVVLEE  135 (176)
T ss_pred             Cccc---hhheeE--------EEEEecCchHHHHHHHHcCCCHHHHhhhcchHHHHHHHHH
Confidence            3332   345444        8899999999999999998754333334445555555543

>PTZ00301 uridine kinase; Provisional

Probab=98.54  E-value=1.4e-06  Score=87.76  Aligned_cols=132  Identities=19%  Similarity=0.276  Sum_probs=77.2

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc----CCC-eEEeehhhhcCCC------------CC-----cHHHHHHHHHHHHh
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS----ARP-WARICQDTINKGK------------SG-----TKVQCLTSASSALK   76 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~----~~~-~~~Is~D~ir~~~------------~~-----~~~~~~~~~~~~L~   76 (636)
                      ++.+|.+.|+|||||||||+.|++.+    +.. ...++.|.+....            +.     ....+.+.+ ..|+
T Consensus         2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l-~~L~   80 (210)
T PTZ00301          2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHL-RELK   80 (210)
T ss_pred             CCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHH-HHHH
Confidence            45789999999999999999988665    322 3467777774211            01     122222333 4444


Q ss_pred             CC-------------------------CeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCC
Q 006654           77 KG-------------------------KSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGN  131 (636)
Q Consensus        77 ~G-------------------------~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~  131 (636)
                      +|                         .-+|++|......  ..+.++  .+.   .+|+++|.+++..|...|.....+
T Consensus        81 ~g~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l~~--~~l~~l--~D~---~ifvd~~~d~~~~Rr~~Rd~~~rG  153 (210)
T PTZ00301         81 SGKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFTN--AELRNE--MDC---LIFVDTPLDICLIRRAKRDMRERG  153 (210)
T ss_pred             cCCcccCCCcccccCCcCCceEEeCCCcEEEEechhhhCC--HHHHHh--CCE---EEEEeCChhHHHHHHHhhhHHhcC
Confidence            43                         1367788544211  122222  122   589999999999999999875432


Q ss_pred             CCCCChHHHHHHHHh-------hhcCCCccCCccEEEEe
Q 006654          132 LQGGKAAAVVNRMLQ-------KKELPKLSEGFSRITLC  163 (636)
Q Consensus       132 ~~~~vp~evi~rm~~-------~fe~P~~~Egfd~Viii  163 (636)
                         ..++.++.++..       .|..|..  ...++++-
T Consensus       154 ---~~~e~v~~~~~~~v~~~~~~~I~p~k--~~ADiIi~  187 (210)
T PTZ00301        154 ---RTFESVIEQYEATVRPMYYAYVEPSK--VYADIIVP  187 (210)
T ss_pred             ---CCHHHHHHHHHHhhcccHHHHcCccc--cCCcEEEc
Confidence               345666654443       3556653  23455443

>PRK04182 cytidylate kinase; Provisional

Probab=98.53  E-value=1.2e-06  Score=84.43  Aligned_cols=94  Identities=17%  Similarity=0.260  Sum_probs=59.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-cC--CCCC-------------c-HHHHHHHHHHHHh-CCCeEEE
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK--GKSG-------------T-KVQCLTSASSALK-KGKSVFL   83 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r~--~~~~-------------~-~~~~~~~~~~~L~-~G~~VII   83 (636)
                      +|+|+|+|||||||+|+.|++.++  +.+++.|++ +.  ...+             . ...........+. .+.++|+
T Consensus         2 ~I~i~G~~GsGKstia~~la~~lg--~~~id~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi   79 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKLG--LKHVSAGEIFRELAKERGMSLEEFNKYAEEDPEIDKEIDRRQLEIAEKEDNVVL   79 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC--CcEecHHHHHHHHHHHcCCCHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCEEE
Confidence            689999999999999999999998  556775443 21  0001             0 0111122222333 5667888


Q ss_pred             eCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           84 DRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        84 D~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      |+...      .|  + ...  ....|+|++|.+++.+|+..|..
T Consensus        80 ~g~~~------~~--~~~~~--~~~~V~l~a~~e~~~~Rl~~r~~  114 (180)
T PRK04182         80 EGRLA------GW--MAKDY--ADLKIWLKAPLEVRAERIAEREG  114 (180)
T ss_pred             EEeec------ce--EecCC--CCEEEEEECCHHHHHHHHHhccC
Confidence            88321      11  2 211  23478999999999999998864

>PRK12338 hypothetical protein; Provisional

Probab=98.52  E-value=1.4e-06  Score=92.48  Aligned_cols=106  Identities=18%  Similarity=0.205  Sum_probs=73.2

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEe-ehhhhcCCCCC------------c----H-----------------
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARI-CQDTINKGKSG------------T----K-----------------   64 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~I-s~D~ir~~~~~------------~----~-----------------   64 (636)
                      +|.+|++.|+|||||||+|+.|++.++  +.++ +.|.++.-..+            .    |                 
T Consensus         3 ~p~ii~i~G~sGsGKST~a~~la~~l~--~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~   80 (319)
T PRK12338          3 KPYVILIGSASGIGKSTIASELARTLN--IKHLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELIC   80 (319)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHCC--CeEEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHH
Confidence            578999999999999999999999998  4445 66666421000            0    0                 


Q ss_pred             ----HHH-------HHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654           65 ----VQC-------LTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (636)
Q Consensus        65 ----~~~-------~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~  128 (636)
                          .++       ...+.++++.|.++||+|..+.+...... . ......+.++++..+.+..++|...|...
T Consensus        81 ~gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~-~-~~~~~~v~~~vl~~dee~h~~Rf~~R~~~  153 (319)
T PRK12338         81 AGFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDIE-Q-FEENASIHFFILSADEEVHKERFVKRAME  153 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhhh-h-hcccCceEEEEEECCHHHHHHHHHHhhhc
Confidence                011       13445567788999999998888655432 1 11223456667778889999999998864

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=98.52  E-value=6.4e-07  Score=88.84  Aligned_cols=111  Identities=19%  Similarity=0.167  Sum_probs=68.8

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCC--------------C--------C--c------------
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK--------------S--------G--T------------   63 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~--------------~--------~--~------------   63 (636)
                      +.+|.|+|++||||||+++.|.+ +|  +.+++.|.+....              +        +  .            
T Consensus         2 ~~~i~ltG~~gsGKst~~~~l~~-~g--~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~   78 (194)
T PRK00081          2 MLIIGLTGGIGSGKSTVANLFAE-LG--APVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDP   78 (194)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH-cC--CEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCH
Confidence            46899999999999999999988 77  6778877763110              0        1  0            


Q ss_pred             ----------HHHHHHHHHHHHhCC---CeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 006654           64 ----------KVQCLTSASSALKKG---KSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEG  130 (636)
Q Consensus        64 ----------~~~~~~~~~~~L~~G---~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~  130 (636)
                                +..+...+.+.+...   ..+|+|..-+.......+     .+   .++++.+|.++..+|+.+|..   
T Consensus        79 ~~~~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~pll~e~~~~~~-----~D---~vi~V~a~~e~~~~Rl~~R~~---  147 (194)
T PRK00081         79 EARKKLEAILHPLIREEILEQLQEAESSPYVVLDIPLLFENGLEKL-----VD---RVLVVDAPPETQLERLMARDG---  147 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccCCEEEEEehHhhcCCchhh-----CC---eEEEEECCHHHHHHHHHHcCC---
Confidence                      001113333333332   467888843333222222     11   378899999999999999854   


Q ss_pred             CCCCCChHHHHHHHHhhh
Q 006654          131 NLQGGKAAAVVNRMLQKK  148 (636)
Q Consensus       131 ~~~~~vp~evi~rm~~~f  148 (636)
                          ...+++..++..++
T Consensus       148 ----~s~e~~~~ri~~Q~  161 (194)
T PRK00081        148 ----LSEEEAEAIIASQM  161 (194)
T ss_pred             ----CCHHHHHHHHHHhC
Confidence                23345556665543

>PRK04040 adenylate kinase; Provisional

Probab=98.52  E-value=1.6e-06  Score=85.86  Aligned_cols=102  Identities=15%  Similarity=0.212  Sum_probs=58.6

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc------CCCCCcH-----------HHHHHHHHHH---HhCC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN------KGKSGTK-----------VQCLTSASSA---LKKG   78 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir------~~~~~~~-----------~~~~~~~~~~---L~~G   78 (636)
                      +|.+|+++|+|||||||+++.|++.++..+.+++.+.+.      .+...+.           ......+.+.   +..+
T Consensus         1 ~~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~l~~~~~~~~~~~a~~~i~~~~~~   80 (188)
T PRK04040          1 MMKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRKLPPEEQKELQREAAERIAEMAGE   80 (188)
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhhCChhhhHHHHHHHHHHHHHhhcC
Confidence            467899999999999999999999983125556655542      1111111           1111223322   3445


Q ss_pred             CeEEEeCC--------CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHh
Q 006654           79 KSVFLDRC--------NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVK  124 (636)
Q Consensus        79 ~~VIID~t--------n~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~  124 (636)
                      ..+|+|+-        .+....+.-+..+   . +-.+++|.+|.++..+|...
T Consensus        81 ~~~~~~~h~~i~~~~g~~~~~~~~~~~~l---~-pd~ii~l~a~p~~i~~Rrl~  130 (188)
T PRK04040         81 GPVIVDTHATIKTPAGYLPGLPEWVLEEL---N-PDVIVLIEADPDEILMRRLR  130 (188)
T ss_pred             CCEEEeeeeeeccCCCCcCCCCHHHHhhc---C-CCEEEEEeCCHHHHHHHHhc
Confidence            66999991        1111122222222   1 22467888888887777664

>PRK13975 thymidylate kinase; Provisional

Probab=98.52  E-value=1.5e-06  Score=85.51  Aligned_cols=107  Identities=21%  Similarity=0.289  Sum_probs=60.7

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhh-----hcC----CCCCc----------HHHHHHHHHHHHhCCC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT-----INK----GKSGT----------KVQCLTSASSALKKGK   79 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~-----ir~----~~~~~----------~~~~~~~~~~~L~~G~   79 (636)
                      |..+|++.|++||||||+++.|++.++..+.....|.     +++    .....          ..+.+..+...+.. .
T Consensus         1 m~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~~~~~~~g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~~~i~~~~~~-~   79 (196)
T PRK13975          1 MNKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCEPTDGKIGKLIREILSGSKCDKETLALLFAADRVEHVKEIEEDLKK-R   79 (196)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCeeECCCCChHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-C
Confidence            3578999999999999999999999873222222211     111    10010          01112333444444 6


Q ss_pred             eEEEeCCCCCHHHH-------HHHH-Hh-CCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 006654           80 SVFLDRCNLEREQR-------TDFV-KL-GGPEVDVHAVVLDLPAKLCISRSVKRI  126 (636)
Q Consensus        80 ~VIID~tn~~~~~R-------~~l~-~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~  126 (636)
                      .||+|...+..-..       ..|. .+ .....+-.+++|++|.+++.+|+..|.
T Consensus        80 ~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~  135 (196)
T PRK13975         80 DVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRD  135 (196)
T ss_pred             EEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccC
Confidence            78999743321000       0111 11 111112258899999999999999886

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=98.51  E-value=5.2e-07  Score=86.13  Aligned_cols=94  Identities=20%  Similarity=0.281  Sum_probs=62.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC---CCC--------------cHHHHH-HHHHHHHhCCCeEEE
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG---KSG--------------TKVQCL-TSASSALKKGKSVFL   83 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~---~~~--------------~~~~~~-~~~~~~L~~G~~VII   83 (636)
                      +|.+.|+|||||||+|+.|++.+|  +.+++...++.+   ..+              ..+..+ +...+... ..++|+
T Consensus         2 ~ItIsG~pGsG~TTva~~lAe~~g--l~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~iD~rq~e~a~-~~nvVl   78 (179)
T COG1102           2 VITISGLPGSGKTTVARELAEHLG--LKLVSAGTIFREMARERGMSLEEFSRYAEEDPEIDKEIDRRQKELAK-EGNVVL   78 (179)
T ss_pred             EEEeccCCCCChhHHHHHHHHHhC--CceeeccHHHHHHHHHcCCCHHHHHHHHhcCchhhHHHHHHHHHHHH-cCCeEE
Confidence            578999999999999999999999  677886444321   111              111222 23333334 567898


Q ss_pred             eCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           84 DRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        84 D~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      ++      .-..|+- +  .+.-..|||..|.++-.+|++.|..
T Consensus        79 eg------rLA~Wi~-k--~~adlkI~L~Apl~vRa~Ria~REg  113 (179)
T COG1102          79 EG------RLAGWIV-R--EYADLKIWLKAPLEVRAERIAKREG  113 (179)
T ss_pred             hh------hhHHHHh-c--cccceEEEEeCcHHHHHHHHHHhcC
Confidence            88      2233322 2  1222368999999999999999986

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=98.50  E-value=1.5e-07  Score=90.12  Aligned_cols=93  Identities=20%  Similarity=0.144  Sum_probs=61.7

Q ss_pred             CCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCc-------------HHHHHHHHHHHHhCCCeEEEeC---CCCCHHH
Q 006654           29 PGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT-------------KVQCLTSASSALKKGKSVFLDR---CNLEREQ   92 (636)
Q Consensus        29 PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~-------------~~~~~~~~~~~L~~G~~VIID~---tn~~~~~   92 (636)
                      |||||||+++.|++.++  +..+|.|.+.....+.             +......+...+....+.||..   .....+.
T Consensus         1 ~GsGKStvg~~lA~~L~--~~fiD~D~~i~~~~g~si~~i~~~~G~~~fr~~E~~~l~~l~~~~~~VIa~GGG~~~~~~~   78 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLG--RPFIDLDDEIEERTGMSISEIFAEEGEEAFRELESEALRELLKENNCVIACGGGIVLKEEN   78 (158)
T ss_dssp             TTSSHHHHHHHHHHHHT--SEEEEHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEE-TTGGGSHHH
T ss_pred             CCCcHHHHHHHHHHHhC--CCccccCHHHHHHhCCcHHHHHHcCChHHHHHHHHHHHHHHhccCcEEEeCCCCCcCcHHH
Confidence            79999999999999999  6668888875433331             1223344444444443555555   5566666


Q ss_pred             HHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccccc
Q 006654           93 RTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHE  129 (636)
Q Consensus        93 R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~  129 (636)
                      +..+.   +.+.   +|||+.+.+.+.+|+..+..+|
T Consensus        79 ~~~L~---~~g~---vI~L~~~~~~l~~Rl~~~~~Rp  109 (158)
T PF01202_consen   79 RELLK---ENGL---VIYLDADPEELAERLRARDNRP  109 (158)
T ss_dssp             HHHHH---HHSE---EEEEE--HHHHHHHHHHHCTSG
T ss_pred             HHHHH---hCCE---EEEEeCCHHHHHHHHhCCCCCC
Confidence            66653   2333   8999999999999998887744

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=98.47  E-value=7.6e-07  Score=85.96  Aligned_cols=94  Identities=19%  Similarity=0.227  Sum_probs=60.3

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC--------CCCc----HHHHHHHHHHHHhCCCeEEEeCCCCC
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG--------KSGT----KVQCLTSASSALKKGKSVFLDRCNLE   89 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~--------~~~~----~~~~~~~~~~~L~~G~~VIID~tn~~   89 (636)
                      +|++.|.||.||||+|+.|. .++..+.+++ +.....        ...+    .+.+...+...+ ...+.|+|+    
T Consensus         2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~-el~~e~~~~~~~de~r~s~~vD~d~~~~~le~~~-~~~~~Ivd~----   74 (180)
T COG1936           2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN-ELAKENGLYTEYDELRKSVIVDVDKLRKRLEELL-REGSGIVDS----   74 (180)
T ss_pred             eEEEeCCCCCchHHHHHHHH-HhCCceeeHH-HHHHhcCCeeccCCccceEEeeHHHHHHHHHHHh-ccCCeEeec----
Confidence            68999999999999999999 8884444444 322211        1111    122223333333 446788898    


Q ss_pred             HHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 006654           90 REQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEG  130 (636)
Q Consensus        90 ~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~  130 (636)
                           .+.-+ ....   .+|+|.++.+.+.+|+..|+-.+.
T Consensus        75 -----H~~hl~~~~d---lVvVLR~~p~~L~~RLk~RGy~~e  108 (180)
T COG1936          75 -----HLSHLLPDCD---LVVVLRADPEVLYERLKGRGYSEE  108 (180)
T ss_pred             -----hhhhcCCCCC---EEEEEcCCHHHHHHHHHHcCCCHH
Confidence                 22223 2222   388999999999999999987543

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=98.46  E-value=8.4e-07  Score=87.71  Aligned_cols=35  Identities=29%  Similarity=0.332  Sum_probs=29.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir   57 (636)
                      +|.+.|+|||||||+|+.|++.++ .+.+|+.|.+.
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~-~~~~i~~Ddf~   35 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILP-NCCVIHQDDFF   35 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcC-CCeEEcccccc
Confidence            478999999999999999999984 26678888774

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PRK13973 thymidylate kinase; Provisional

Probab=98.46  E-value=5.9e-06  Score=83.14  Aligned_cols=108  Identities=21%  Similarity=0.250  Sum_probs=67.7

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEee-------hhhhcC----C---CCCcH-----------HHHHHHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARIC-------QDTINK----G---KSGTK-----------VQCLTSA   71 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is-------~D~ir~----~---~~~~~-----------~~~~~~~   71 (636)
                      ..+|++-|++||||||+++.|++.+   |..+..+.       .+.+|+    .   .....           +.+...+
T Consensus         3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a~r~~~~~~~i   82 (213)
T PRK13973          3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAAARDDHVEEVI   82 (213)
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999987   43332231       123321    1   11111           1122456


Q ss_pred             HHHHhCCCeEEEeCCCCCH------------HHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           72 SSALKKGKSVFLDRCNLER------------EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        72 ~~~L~~G~~VIID~tn~~~------------~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      ..+|.+|..||.|..-++.            .+...+... .....+=.+++|++|.+++.+|+.+|..
T Consensus        83 ~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~  151 (213)
T PRK13973         83 RPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRG  151 (213)
T ss_pred             HHHHHCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccC
Confidence            6788899999999955222            122222222 1111233689999999999999999964

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=98.45  E-value=2.3e-06  Score=86.05  Aligned_cols=132  Identities=23%  Similarity=0.322  Sum_probs=82.3

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCC-CeEEeehhhhcCCCCC-----------------cHHHHHHHHHHHHhCC-
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR-PWARICQDTINKGKSG-----------------TKVQCLTSASSALKKG-   78 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~-~~~~Is~D~ir~~~~~-----------------~~~~~~~~~~~~L~~G-   78 (636)
                      .++.+|-+.|++||||||+|+.|.+.++. ....|++|.+......                 .+ .++..-...|.+| 
T Consensus         6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~-dLl~~~L~~L~~g~   84 (218)
T COG0572           6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDL-DLLIEHLKDLKQGK   84 (218)
T ss_pred             CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcH-HHHHHHHHHHHcCC
Confidence            35689999999999999999999999983 3467898888532110                 11 1222223334433 


Q ss_pred             ------------------------CeEEEeCCCCCHHHH-HHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCC
Q 006654           79 ------------------------KSVFLDRCNLEREQR-TDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQ  133 (636)
Q Consensus        79 ------------------------~~VIID~tn~~~~~R-~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~  133 (636)
                                              +-|||+|...-...| ..+.++        -||+++|.+++..|...|.....+  
T Consensus        85 ~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d~~lr~~~d~--------kIfvdtd~D~RliRri~RD~~~rg--  154 (218)
T COG0572          85 PVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYDERLRDLMDL--------KIFVDTDADVRLIRRIKRDVQERG--  154 (218)
T ss_pred             cccccccchhcccccCCccccCCCcEEEEecccccccHHHHhhcCE--------EEEEeCCccHHHHHHHHHHHHHhC--
Confidence                                    237778865433322 223222        679999999999999988865332  


Q ss_pred             CCChHHHHHH-------HHhhhcCCCccCCccEEEEe
Q 006654          134 GGKAAAVVNR-------MLQKKELPKLSEGFSRITLC  163 (636)
Q Consensus       134 ~~vp~evi~r-------m~~~fe~P~~~Egfd~Viii  163 (636)
                       ..++.++.+       |+.+|-+|.  ..+.++++-
T Consensus       155 -~~~e~vi~qy~~~vkp~~~~fIept--k~~ADiiip  188 (218)
T COG0572         155 -RDLESVIEQYVKTVRPMYEQFIEPT--KKYADIIIP  188 (218)
T ss_pred             -CCHHHHHHHHHHhhChhhhhccCcc--cccceEEee
Confidence             345555554       445566665  234555443

>PLN02199 shikimate kinase

Probab=98.44  E-value=2.3e-06  Score=89.76  Aligned_cols=96  Identities=20%  Similarity=0.183  Sum_probs=65.5

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCC-CCc-------------HHHHHHHHHHHHhCCCeEEEeC
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK-SGT-------------KVQCLTSASSALKKGKSVFLDR   85 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~-~~~-------------~~~~~~~~~~~L~~G~~VIID~   85 (636)
                      ...|+|+|+|||||||+++.|++.++  +..||.|.+.+.. .+.             +.+....+...+.....+||..
T Consensus       102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg--~~fIDtD~lIe~~~~G~sI~eIf~~~GE~~FR~~E~e~L~~L~~~~~~VISt  179 (303)
T PLN02199        102 GRSMYLVGMMGSGKTTVGKLMSKVLG--YTFFDCDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRYQVVVST  179 (303)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC--CCEEehHHHHHHHhcCCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCEEEEC
Confidence            45789999999999999999999998  5568888765432 121             1122334444444444556654


Q ss_pred             ---CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHh
Q 006654           86 ---CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVK  124 (636)
Q Consensus        86 ---tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~  124 (636)
                         ....+..|..+   + .|.   +|||++|.+.+.+|+..
T Consensus       180 GGG~V~~~~n~~~L---~-~G~---vV~Ldas~E~l~~RL~~  214 (303)
T PLN02199        180 GGGAVIRPINWKYM---H-KGI---SIWLDVPLEALAHRIAA  214 (303)
T ss_pred             CCcccCCHHHHHHH---h-CCe---EEEEECCHHHHHHHHhh
Confidence               34555555533   3 354   89999999999999985

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=98.44  E-value=8.8e-07  Score=84.80  Aligned_cols=95  Identities=22%  Similarity=0.264  Sum_probs=60.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC---CCC-c-------------HHHHH-HHHHHHHhCCCeEEE
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG---KSG-T-------------KVQCL-TSASSALKKGKSVFL   83 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~---~~~-~-------------~~~~~-~~~~~~L~~G~~VII   83 (636)
                      +|++.|+|||||||+|+.|++.++  +.+++.|.+...   ..+ .             ....+ ..+......+..+|+
T Consensus         2 iI~i~G~~GSGKstia~~la~~lg--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Vi   79 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAEKLS--LKLISAGDIFRELAAKMGLDLIEFLNYAEENPEIDKKIDRRIHEIALKEKNVVL   79 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC--CceecHHHHHHHHHHHcCCCHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCCEEE
Confidence            689999999999999999999998  566887543211   000 0             01111 222223335667899


Q ss_pred             eCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           84 DRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        84 D~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      |+....      | .+... .. ..|++.+|.+++.+|+.+|..
T Consensus        80 ~g~~~~------~-~~~~~-~d-~~v~v~a~~~~r~~R~~~R~~  114 (171)
T TIGR02173        80 ESRLAG------W-IVREY-AD-VKIWLKAPLEVRARRIAKREG  114 (171)
T ss_pred             Eecccc------e-eecCC-cC-EEEEEECCHHHHHHHHHHccC
Confidence            984321      1 01111 11 368999999999999999965

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>PRK00698 tmk thymidylate kinase; Validated

Probab=98.43  E-value=2.3e-06  Score=84.41  Aligned_cols=108  Identities=21%  Similarity=0.194  Sum_probs=63.3

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeeh-----------hhhcC--CCCCcHH-----------HHHHHHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQ-----------DTINK--GKSGTKV-----------QCLTSAS   72 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~-----------D~ir~--~~~~~~~-----------~~~~~~~   72 (636)
                      ..+|++.|++||||||+++.|++.+.   ..+.....           ..+..  .....+.           .....+.
T Consensus         3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~i~   82 (205)
T PRK00698          3 GMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFTREPGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQHLEEVIK   82 (205)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEeeCCCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            56899999999999999999998753   11221110           11111  1111111           1113344


Q ss_pred             HHHhCCCeEEEeCCCCCH------------HHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           73 SALKKGKSVFLDRCNLER------------EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        73 ~~L~~G~~VIID~tn~~~------------~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      ..+..|..||+|...+..            .+-..+... .....+-.+|+|++|.+++.+|+.+|..
T Consensus        83 ~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~~  150 (205)
T PRK00698         83 PALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARGE  150 (205)
T ss_pred             HHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence            566789999999633332            111122222 2212233689999999999999999974

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=98.39  E-value=3e-06  Score=89.27  Aligned_cols=110  Identities=20%  Similarity=0.185  Sum_probs=76.3

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC--------------------CCC------CcH-----
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK--------------------GKS------GTK-----   64 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~--------------------~~~------~~~-----   64 (636)
                      ...+|.+|++.|++||||||+|.+|++.++.+ ..+++|.+++                    .|.      ...     
T Consensus        88 ~~~~p~iIlI~G~sgsGKStlA~~La~~l~~~-~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l~  166 (301)
T PRK04220         88 KSKEPIIILIGGASGVGTSTIAFELASRLGIR-SVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVIY  166 (301)
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCC-EEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhhh
Confidence            33578999999999999999999999999844 3678888861                    111      000     


Q ss_pred             ---HH-------HHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEe-CCHHHHHHHHHhccccc
Q 006654           65 ---VQ-------CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLD-LPAKLCISRSVKRIEHE  129 (636)
Q Consensus        65 ---~~-------~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld-~p~e~l~~R~~~R~~~~  129 (636)
                         .+       +...+.+++.+|.++|+.|.++.+.....+...  . ..+..+++. .+.+...+|...|....
T Consensus       167 g~~~~~~~v~~gi~~~I~~~~~~g~s~IiEGvhl~P~~i~~~~~~--~-~~~i~~~l~i~~ee~h~~RF~~R~~~~  239 (301)
T PRK04220        167 GFERHVEPVSVGVEAVIERALKEGISVIIEGVHIVPGFIKEKYLE--N-PNVFMFVLTLSDEEAHKARFYARARVS  239 (301)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCcEEEecCCCCHHHHHHhhhc--C-CCEEEEEEEECCHHHHHHHHHHHHhhh
Confidence               01       225566778899999999999988765543211  1 123344555 45588899999998865

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=98.38  E-value=1.3e-06  Score=85.49  Aligned_cols=109  Identities=24%  Similarity=0.250  Sum_probs=67.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCC--------------CC--------c--H-------------
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK--------------SG--------T--K-------------   64 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~--------------~~--------~--~-------------   64 (636)
                      +|.|+|.|||||||+++.|.+ +|  +.+++.|.+....              ++        .  +             
T Consensus         1 ii~itG~~gsGKst~~~~l~~-~g--~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~   77 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE-LG--IPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEK   77 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH-CC--CCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHH
Confidence            478999999999999999998 77  6678877763210              00        0  0             


Q ss_pred             ---------HHHHHHHHHHHhC---CCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCC
Q 006654           65 ---------VQCLTSASSALKK---GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNL  132 (636)
Q Consensus        65 ---------~~~~~~~~~~L~~---G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~  132 (636)
                               ..+...+.+.+..   ...+|+|..-+.......+.+        .++++++|.++..+|+..|..     
T Consensus        78 ~~~l~~i~hp~i~~~~~~~~~~~~~~~~vive~plL~e~~~~~~~D--------~vv~V~a~~~~ri~Rl~~Rd~-----  144 (179)
T cd02022          78 RKKLEAITHPLIRKEIEEQLAEARKEKVVVLDIPLLFETGLEKLVD--------RVIVVDAPPEIQIERLMKRDG-----  144 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCCCEEEEEehHhhcCCcHHhCC--------eEEEEECCHHHHHHHHHHcCC-----
Confidence                     0111222222222   235677763332222122211        278999999999999999965     


Q ss_pred             CCCChHHHHHHHHhhh
Q 006654          133 QGGKAAAVVNRMLQKK  148 (636)
Q Consensus       133 ~~~vp~evi~rm~~~f  148 (636)
                        ...+++..++..++
T Consensus       145 --~s~~~~~~r~~~Q~  158 (179)
T cd02022         145 --LSEEEAEARIASQM  158 (179)
T ss_pred             --CCHHHHHHHHHhcC
Confidence              24467777777765

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=98.37  E-value=5.5e-06  Score=87.28  Aligned_cols=105  Identities=18%  Similarity=0.153  Sum_probs=64.5

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHH-HhCCCeEEEeCCCCC--HHHHH
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSA-LKKGKSVFLDRCNLE--REQRT   94 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~-L~~G~~VIID~tn~~--~~~R~   94 (636)
                      .+..+|++.|++||||||+++.|.. .|  +..++.-..     .....+...+... ....-.+++|..+..  ...+.
T Consensus         4 ~~~~~i~i~G~~GsGKtt~~~~l~~-~g--~~~~d~~~~-----~L~~~l~~~~~~~~~~~~~av~iD~r~~~~~~~~~~   75 (288)
T PRK05416          4 APMRLVIVTGLSGAGKSVALRALED-LG--YYCVDNLPP-----SLLPKLVELLAQSGGIRKVAVVIDVRSRPFFDDLPE   75 (288)
T ss_pred             CCceEEEEECCCCCcHHHHHHHHHH-cC--CeEECCcCH-----HHHHHHHHHHHhcCCCCCeEEEEccCchhhHHHHHH
Confidence            4557899999999999999999964 45  444432110     0111222222211 112236888987542  23444


Q ss_pred             HHHHhCCCCCeEEEEEEeCCHHHHHHHHHh-cccccC
Q 006654           95 DFVKLGGPEVDVHAVVLDLPAKLCISRSVK-RIEHEG  130 (636)
Q Consensus        95 ~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~-R~~~~~  130 (636)
                      .+..++..+..+.+|||+++.+++.+|+.. |..|+.
T Consensus        76 ~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~~rr~RPL  112 (288)
T PRK05416         76 ALDELRERGIDVRVLFLDASDEVLIRRYSETRRRHPL  112 (288)
T ss_pred             HHHHHHHcCCcEEEEEEECCHHHHHHHHhhcccCCCc
Confidence            455554447778889999999999999975 334543

>TIGR00235 udk uridine kinase

Probab=98.37  E-value=3.6e-06  Score=84.08  Aligned_cols=105  Identities=23%  Similarity=0.275  Sum_probs=63.3

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcCC-CeEEeehhhhcCC------------CCC---cH-HHHHHHHHHHHhCC-
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSAR-PWARICQDTINKG------------KSG---TK-VQCLTSASSALKKG-   78 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~-~~~~Is~D~ir~~------------~~~---~~-~~~~~~~~~~L~~G-   78 (636)
                      ++++.+|.++|++|||||||++.|+..++. ....+++|.+...            .+.   .. ...+......|..| 
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~   82 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKNGS   82 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHCCC
Confidence            456789999999999999999999987652 3456777665311            000   01 11222233334433 


Q ss_pred             ------------------------CeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654           79 ------------------------KSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (636)
Q Consensus        79 ------------------------~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~  128 (636)
                                              ..||+|+.......  .+..+  .+   .+|++++|.+++..|...|...
T Consensus        83 ~v~~p~yd~~~~~~~~~~~~~~~~~~vIieG~~~~~~~--~~~~~--~d---~~I~v~~~~~~~l~R~~~R~~~  149 (207)
T TIGR00235        83 PIDVPVYDYVNHTRPKETVHIEPKDVVILEGIMPLFDE--RLRDL--MD---LKIFVDTPLDIRLIRRIERDIN  149 (207)
T ss_pred             CEecccceeecCCCCCceEEeCCCCEEEEEehhhhchH--hHHHh--CC---EEEEEECChhHHHHHHHHHHHH
Confidence                                    23667764332111  11111  12   3789999999999999998754

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK07667 uridine kinase; Provisional

Probab=98.37  E-value=3.1e-06  Score=83.83  Aligned_cols=102  Identities=18%  Similarity=0.174  Sum_probs=64.3

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhcCC--------CC------Cc-H--HHHHHHHHHHHhC
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKG--------KS------GT-K--VQCLTSASSALKK   77 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir~~--------~~------~~-~--~~~~~~~~~~L~~   77 (636)
                      +.+.+|.|.|+|||||||+|+.|++.++   .+...++.|.+...        ..      .. +  ..+...+...|+.
T Consensus        15 ~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~~   94 (193)
T PRK07667         15 ENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQN   94 (193)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhcC
Confidence            4558999999999999999999998763   45667888775321        10      00 1  1111223233333


Q ss_pred             C-------------------------CeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           78 G-------------------------KSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        78 G-------------------------~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      +                         ..+|+|+..+.......+.+        .+|++++|.++..+|..+|..
T Consensus        95 ~~~i~~P~~d~~~~~~~~~~~~~~~~~vvIvEG~~l~~~~~~~~~d--------~~v~V~~~~~~~~~R~~~r~~  161 (193)
T PRK07667         95 ETKLTLPFYHDETDTCEMKKVQIPIVGVIVIEGVFLQRKEWRDFFH--------YMVYLDCPRETRFLRESEETQ  161 (193)
T ss_pred             CCeEEEeeeccccccccccceecCCCCEEEEEehhhhhhhHHhhce--------EEEEEECCHHHHHHHHhcccH
Confidence            3                         34677885543322222222        378999999999999998764

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=98.35  E-value=4.6e-06  Score=81.92  Aligned_cols=108  Identities=19%  Similarity=0.235  Sum_probs=63.0

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCC---CeEEeeh-------hhhcC----CC---CCc--H---------HHHHHHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSAR---PWARICQ-------DTINK----GK---SGT--K---------VQCLTSA   71 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~---~~~~Is~-------D~ir~----~~---~~~--~---------~~~~~~~   71 (636)
                      ..+|++.|+|||||||+++.|++.++.   ....+..       +.++.    ..   ...  .         ......+
T Consensus         3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~~i   82 (195)
T TIGR00041         3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHEHLEDKI   82 (195)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999988752   1222210       11111    10   110  0         0112345


Q ss_pred             HHHHhCCCeEEEeCCCCCHH---------HHHHHHHh-CCC-C-CeEEEEEEeCCHHHHHHHHHhccc
Q 006654           72 SSALKKGKSVFLDRCNLERE---------QRTDFVKL-GGP-E-VDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        72 ~~~L~~G~~VIID~tn~~~~---------~R~~l~~l-~~~-g-~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      ...+..|..||+|...++..         .+..+..+ ... . .+-.+|+|++|.+++.+|+..|..
T Consensus        83 ~~~l~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~~  150 (195)
T TIGR00041        83 KPALAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRGE  150 (195)
T ss_pred             HHHHhCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence            56677888899997432221         01111111 111 1 123589999999999999999865

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=98.33  E-value=1.4e-05  Score=78.14  Aligned_cols=134  Identities=15%  Similarity=0.255  Sum_probs=75.7

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeE-Eee--------------------hhhhc----CCCCCc--------HH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWA-RIC--------------------QDTIN----KGKSGT--------KV   65 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~-~Is--------------------~D~ir----~~~~~~--------~~   65 (636)
                      ++++|+|+||+||||+|+++.|.+.++..+. .+.                    .+.+.    .+.+-.        .-
T Consensus         1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YG   80 (183)
T PF00625_consen    1 KRRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYG   80 (183)
T ss_dssp             SSSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhh
Confidence            3568999999999999999999998763231 111                    11110    000000        00


Q ss_pred             HHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeC-CHHHHHHHHHhcccccCCCCCCChHHHHHHH
Q 006654           66 QCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDL-PAKLCISRSVKRIEHEGNLQGGKAAAVVNRM  144 (636)
Q Consensus        66 ~~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~-p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm  144 (636)
                      .....+...+..|+.+|+|.      ....+..++..+....+|++.+ +.+.+.+|+..|..       ....++.+++
T Consensus        81 t~~~~i~~~~~~gk~~il~~------~~~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~~-------~~~~~i~~r~  147 (183)
T PF00625_consen   81 TSKSAIDKVLEEGKHCILDV------DPEGVKQLKKAGFNPIVIFIKPPSPEVLKRRLRRRGD-------ESEEEIEERL  147 (183)
T ss_dssp             EEHHHHHHHHHTTTEEEEEE------THHHHHHHHHCTTTEEEEEEEESSHHHHHHHHHTTTH-------CHHHHHHHHH
T ss_pred             hccchhhHhhhcCCcEEEEc------cHHHHHHHHhcccCceEEEEEccchHHHHHHHhcccc-------ccHHHHHHHH
Confidence            01256677889999999997      2344444522255566777765 46888888877765       2233444443


Q ss_pred             HhhhcCCCccCCccEEEEeCC
Q 006654          145 LQKKELPKLSEGFSRITLCQN  165 (636)
Q Consensus       145 ~~~fe~P~~~Egfd~Viii~~  165 (636)
                      ...-..-.....|+.++.-++
T Consensus       148 ~~~~~~~~~~~~fd~vi~n~~  168 (183)
T PF00625_consen  148 ERAEKEFEHYNEFDYVIVNDD  168 (183)
T ss_dssp             HHHHHHHGGGGGSSEEEECSS
T ss_pred             HHHHHHHhHhhcCCEEEECcC
Confidence            332111111222888766443

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=98.33  E-value=3.2e-06  Score=84.02  Aligned_cols=35  Identities=20%  Similarity=0.167  Sum_probs=30.4

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir   57 (636)
                      .+|.++|++||||||+++.|++.+|  +.++|.|.+.
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~g--~~~i~~D~~~   36 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQKG--IPILDADIYA   36 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhC--CeEeeCcHHH
Confidence            4689999999999999999999888  6678887773

>TIGR00152 dephospho-CoA kinase

Probab=98.32  E-value=2.2e-06  Score=84.25  Aligned_cols=110  Identities=22%  Similarity=0.244  Sum_probs=67.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC-----C-----------------CCc----------------
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG-----K-----------------SGT----------------   63 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~-----~-----------------~~~----------------   63 (636)
                      +|.++|.+||||||+++.|++..+  +.+++.|.+...     .                 .|.                
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~~--~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~   78 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKYH--FPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEE   78 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcC--CeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHH
Confidence            378999999999999999998865  667888777210     0                 010                


Q ss_pred             --------HHHHHHHHHHHH----hCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCC
Q 006654           64 --------KVQCLTSASSAL----KKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGN  131 (636)
Q Consensus        64 --------~~~~~~~~~~~L----~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~  131 (636)
                              +..+...+.+.+    ..|..||++...+.......+     .+   .++++++|.+++.+|+..|..    
T Consensus        79 ~~~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~-----~D---~vv~V~~~~~~~~~Rl~~R~~----  146 (188)
T TIGR00152        79 LKWLNNLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSL-----CD---RVIVVDVSPQLQLERLMQRDN----  146 (188)
T ss_pred             HHHHHHhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHh-----CC---EEEEEECCHHHHHHHHHHcCC----
Confidence                    001112222222    234467777743332211112     11   278899999999999999974    


Q ss_pred             CCCCChHHHHHHHHhhh
Q 006654          132 LQGGKAAAVVNRMLQKK  148 (636)
Q Consensus       132 ~~~~vp~evi~rm~~~f  148 (636)
                         ...+++.+++..++
T Consensus       147 ---~s~~~~~~r~~~q~  160 (188)
T TIGR00152       147 ---LTEEEVQKRLASQM  160 (188)
T ss_pred             ---CCHHHHHHHHHhcC
Confidence               23466667776664

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PLN02924 thymidylate kinase

Probab=98.32  E-value=6.6e-06  Score=83.43  Aligned_cols=107  Identities=19%  Similarity=0.212  Sum_probs=66.2

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcCC---CeEEee-hh-------hhc----CC-CCCc----------HHHHHHH
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSAR---PWARIC-QD-------TIN----KG-KSGT----------KVQCLTS   70 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~---~~~~Is-~D-------~ir----~~-~~~~----------~~~~~~~   70 (636)
                      ..+..+|++.|++||||||+++.|++.+..   ....+. .+       .++    .. ....          +.+....
T Consensus        13 ~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~~~   92 (220)
T PLN02924         13 ESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEKRSL   92 (220)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            356789999999999999999999988752   121111 00       111    11 0111          1112245


Q ss_pred             HHHHHhCCCeEEEeCCCCCHHHH-------HHHHH-h-CCCCCeEEEEEEeCCHHHHHHHHH
Q 006654           71 ASSALKKGKSVFLDRCNLEREQR-------TDFVK-L-GGPEVDVHAVVLDLPAKLCISRSV  123 (636)
Q Consensus        71 ~~~~L~~G~~VIID~tn~~~~~R-------~~l~~-l-~~~g~~v~vV~Ld~p~e~l~~R~~  123 (636)
                      +..+|..|..||+|...++.-..       ..|.. + .....+=.+++|++|.+++.+|..
T Consensus        93 I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~  154 (220)
T PLN02924         93 MERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGG  154 (220)
T ss_pred             HHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhc
Confidence            67788899999999977643211       23333 2 222223368999999999999864

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=98.31  E-value=3.8e-06  Score=82.56  Aligned_cols=104  Identities=19%  Similarity=0.277  Sum_probs=61.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhh---------h---cCCC--CCcHHHH------HHHHHHH---HhCC
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT---------I---NKGK--SGTKVQC------LTSASSA---LKKG   78 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~---------i---r~~~--~~~~~~~------~~~~~~~---L~~G   78 (636)
                      +|++.|++||||||+++.|++..+  +..+....         +   ..+.  .....+.      .+...+.   +..|
T Consensus         1 ~I~ieG~~GsGKSTl~~~L~~~~~--~~~~~Ep~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~r~~~~~~~~~~~~~~   78 (193)
T cd01673           1 VIVVEGNIGAGKSTLAKELAEHLG--YEVVPEPVEPDVEGNPFLEKFYEDPKRWAFPFQLYFLLSRLKQYKDALEHLSTG   78 (193)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC--CccccccccccCCCCCCHHHHHhCHHhccHHHHHHHHHHHHHHHHHHHhhcccC
Confidence            478999999999999999998766  22232211         1   0110  0000110      1111222   3478


Q ss_pred             CeEEEeCCCCCHHH---------------H---HHHHHh--CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           79 KSVFLDRCNLEREQ---------------R---TDFVKL--GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        79 ~~VIID~tn~~~~~---------------R---~~l~~l--~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      ..||+|...+....               .   ..|...  .....+-.+|+|++|.+++.+|+.+|.+
T Consensus        79 ~~vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri~~R~r  147 (193)
T cd01673          79 QGVILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKRGR  147 (193)
T ss_pred             CceEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHHHhcCc
Confidence            89999996554211               1   112222  2223344789999999999999999875

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family

Probab=98.31  E-value=2.3e-07  Score=91.46  Aligned_cols=52  Identities=15%  Similarity=0.075  Sum_probs=48.0

Q ss_pred             cccCChhhhhhhcccCCC--CCCccccccCccCCCCCChHHHHHHHHHHHHHHH
Q 006654          257 KGTENPEVASVNQNGSSS--DVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFV  308 (636)
Q Consensus       257 ~~~l~~~~~s~l~~~~~~--~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~  308 (636)
                      .+.+..|+.++|..++.+  +++|||||+||||+||||.++||+++..++++|+
T Consensus       133 ~~~l~~a~~~~L~~a~~~~~~i~sIa~P~igTGvgg~p~~~aA~~m~~ai~~f~  186 (186)
T cd02900         133 TEPVFDAMWNALNAIPKENQEINTLVLPGLGTGYGGVPPEIAAKQMAFAIRLFN  186 (186)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCEEEECchhcCCCCCCHHHHHHHHHHHHHHhC
Confidence            467888999999998887  8999999999999999999999999999999883

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. The yeast protein Ymx7 and related proteins in this family contain a stand-alone macro domain and may be specific phosphatases catalyzing the conversion of ADP-ribose-1"-monophosphate (Appr-1"-p) to ADP-ribose. Appr-1"-p is an intermediate in a metabolic pathway involved in pre-tRNA splicing.

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=98.29  E-value=1.3e-05  Score=88.68  Aligned_cols=108  Identities=17%  Similarity=0.137  Sum_probs=74.9

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC--------C------------C-------CC-----cH-
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK--------G------------K-------SG-----TK-   64 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~--------~------------~-------~~-----~~-   64 (636)
                      ..|.+|+++|+||+||||+|.+|+..++.. ..|+.|.++.        +            |       .+     .. 
T Consensus       253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~-~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~~~~~~~~~~~  331 (475)
T PRK12337        253 PRPLHVLIGGVSGVGKSVLASALAYRLGIT-RIVSTDAVREVLRAMVSKDLLPTLHASTFNAWRALLPPGEGLPAEPTRA  331 (475)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCc-EEeehhHHHHHHHhhcchhhccchhhchhhHHhhccCcccccccccchH
Confidence            469999999999999999999999999832 2567777642        0            0       00     00 


Q ss_pred             -------HH-------HHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEe-CCHHHHHHHHHhccccc
Q 006654           65 -------VQ-------CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLD-LPAKLCISRSVKRIEHE  129 (636)
Q Consensus        65 -------~~-------~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld-~p~e~l~~R~~~R~~~~  129 (636)
                             .+       +...+.+.+..|.++|||+.++.+..+...   ...+..+..+.+. -+.++..+|...|....
T Consensus       332 ~vi~Gf~~q~~~V~~gi~~vI~r~l~eG~SvIIEGVHl~P~~i~~~---~~~~~~~i~flv~isdeeeH~~Rf~~Ra~~~  408 (475)
T PRK12337        332 EVLRGFRDQVQQVAVGLGAIQERSAQEGTSLVLEGVHLVPGYLRHP---YQAGALVVPMLVTLPDEALHRRRFELRDRET  408 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCCHHHHHHH---HhcCCceEEEEEEECCHHHHHHHHHHHhhhc
Confidence                   11       225667888999999999999999876522   2223333323333 46678899999998753

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=98.28  E-value=3.6e-06  Score=94.81  Aligned_cols=95  Identities=20%  Similarity=0.203  Sum_probs=61.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCc-------------HHHHHHHHHHHHhCCCeEEEe-C--
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT-------------KVQCLTSASSALKKGKSVFLD-R--   85 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~-------------~~~~~~~~~~~L~~G~~VIID-~--   85 (636)
                      .|+|+|+|||||||+++.|++.++  +.+++.|.+.....+.             ..+....+.+.+......||. +  
T Consensus         2 ~I~l~G~~GsGKSTv~~~La~~lg--~~~id~D~~i~~~~g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~~~Vis~Ggg   79 (488)
T PRK13951          2 RIFLVGMMGSGKSTIGKRVSEVLD--LQFIDMDEEIERREGRSVRRIFEEDGEEYFRLKEKELLRELVERDNVVVATGGG   79 (488)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcC--CeEEECcHHHHHHcCCCHHHHHHHhhhHHHHHHHHHHHHHHhhcCCEEEECCCc
Confidence            489999999999999999999998  6668888775433221             111222333333323334443 3  


Q ss_pred             CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhc
Q 006654           86 CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKR  125 (636)
Q Consensus        86 tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R  125 (636)
                      ..+...+|..+   ++.    .+|||++|.+++.+|+..|
T Consensus        80 vv~~~~~r~~l---~~~----~vI~L~as~e~l~~Rl~~~  112 (488)
T PRK13951         80 VVIDPENRELL---KKE----KTLFLYAPPEVLMERVTTE  112 (488)
T ss_pred             cccChHHHHHH---hcC----eEEEEECCHHHHHHHhccC
Confidence            23445556544   322    2789999999999999765

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=98.28  E-value=3.6e-06  Score=98.42  Aligned_cols=127  Identities=20%  Similarity=0.249  Sum_probs=78.6

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhcCCCC----------CcHH---HHH----HHHHHHH-hCC
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKS----------GTKV---QCL----TSASSAL-KKG   78 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir~~~~----------~~~~---~~~----~~~~~~L-~~G   78 (636)
                      ..+++|+|+||+||||+|++|++.++   .....++.+.++....          ....   ++.    ..+...+ ..|
T Consensus       215 ~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~v~~~G  294 (664)
T PTZ00322        215 SLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLERRGGAVSSPTGAAEVEFRIAKAIAHDMTTFICKTD  294 (664)
T ss_pred             ceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            45899999999999999999999874   2233444444442111          1111   111    1122223 357


Q ss_pred             CeEEEeCCCCCHHHHHHHHHh-CCCCC----eEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhc
Q 006654           79 KSVFLDRCNLEREQRTDFVKL-GGPEV----DVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKE  149 (636)
Q Consensus        79 ~~VIID~tn~~~~~R~~l~~l-~~~g~----~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe  149 (636)
                      ..+|+|++|.+...|..+.+. ++.+.    .+.++..-+.+...++|+..|.....  + +.++++..+++++++
T Consensus       295 gvaI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~vc~~~~~i~~ni~r~~~~~--~-~~~e~~~~~~~~~~~  367 (664)
T PTZ00322        295 GVAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEVVNNNSETIRRNVLRAKEMF--P-GAPEDFVDRYYEVIE  367 (664)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEEeCCCHHHHHHHHHHHHhcC--C-CCHHHHHHHHHHHHH
Confidence            789999999999999888777 65553    44444444555566777776654321  1 356677677666553

>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B

Probab=98.26  E-value=5.7e-07  Score=82.16  Aligned_cols=50  Identities=24%  Similarity=0.285  Sum_probs=38.6

Q ss_pred             HHhcCccCCCCCeEEEcCcEEEeccCCCCCcccccccCCCCccchhccccc
Q 006654          566 RTAMYPERHKDDLLEISDDVVVLNDLYPKVHPSDNLPPGTLLCICLSSINK  616 (636)
Q Consensus       566 ~~~~~p~~~~~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~~~~~~~~~~~~  616 (636)
                      .+|..+|. +..|||.||++|+|+|.||||..|+|||||...+.++.++++
T Consensus         5 ~~i~~~~~-~~~vly~d~~~v~~~D~~P~a~~H~LviPk~~~i~sl~~L~~   54 (116)
T PF11969_consen    5 CIIIRGEE-PERVLYEDDDFVVFKDIYPKAPVHLLVIPKDPHIRSLRDLTP   54 (116)
T ss_dssp             HHHTTSSS-GGGESEEETSEEEEE-TT-SCCEEEEEEESSSS-SSGGG--G
T ss_pred             eEeEcCCC-CCcEEEEeCCEEEeeCCCCCcCcEEEEEeecCCCCChHHcCH
Confidence            34555555 567999999999999999999999999999999999988864

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=98.25  E-value=1.8e-07  Score=109.53  Aligned_cols=80  Identities=14%  Similarity=0.012  Sum_probs=72.4

Q ss_pred             cccccccccCcceecccccccchhhcccCChhhhhhhcccCCCCCC----------ccccccCccCCCCCChHHHHHHHH
Q 006654          232 TEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSSSDVP----------TLAFPSLSTSDFQFNNEKASDVII  301 (636)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~l~~~~~~~~~----------SiAfPaIStG~~gfP~~~aa~Iiv  301 (636)
                      .+.++.|.++-|.+-++|..+.+  .+.++.||.+||.+|++++++          |||||+||||+||||.++|+.|++
T Consensus       592 ~~g~L~~~~vIh~vGp~~~~~~~--~~~l~~~~~~~L~~Aee~~~~~~~~~~~~~~sia~p~istgv~~~p~~~a~~i~~  669 (725)
T PRK13341        592 PAGKLKLLYSIPAVGPAWALLSE--DELLYKALYSALLEAEELWLKLQWDQSLLQQSLEMPGWSTGIEQWPEELALGIDS  669 (725)
T ss_pred             CCCeeEEEEeccccChHhhhcCc--cchhHHHHHHHHHHHHHHhcccccchhHHHHHHHhcCCccceecCCcccccccCH
Confidence            67788899988988888876433  678999999999999999999          999999999999999999999999


Q ss_pred             HHHHHHHHhcCC
Q 006654          302 EKVEEFVNKLGN  313 (636)
Q Consensus       302 ~tv~~f~~~~~~  313 (636)
                      +++++|+.+++.
T Consensus       670 ~~i~~~~~~~~~  681 (725)
T PRK13341        670 KLIKRWLAQGPD  681 (725)
T ss_pred             HHHHHHHhcCCc
Confidence            999999998765

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=98.20  E-value=2.4e-05  Score=79.12  Aligned_cols=150  Identities=15%  Similarity=0.187  Sum_probs=80.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEee-------h-------h----------hhcCC-C----CCcHHH------
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARIC-------Q-------D----------TINKG-K----SGTKVQ------   66 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is-------~-------D----------~ir~~-~----~~~~~~------   66 (636)
                      +|++-|.-||||||+++.|++.++.....-.       .       +          .+..+ .    .....+      
T Consensus         1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~   80 (219)
T cd02030           1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMYSS   80 (219)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccchhccccccccccccccccCCCcCHHHHhcCCcccCCcchHHHHHHHHH
Confidence            4789999999999999999998762111000       0       0          01111 1    111111      


Q ss_pred             ----HHHHHHHHHhCCCeEEEeCCCCCH---------------HHHHHHHHh-----CCCCCeEEEEEEeCCHHHHHHHH
Q 006654           67 ----CLTSASSALKKGKSVFLDRCNLER---------------EQRTDFVKL-----GGPEVDVHAVVLDLPAKLCISRS  122 (636)
Q Consensus        67 ----~~~~~~~~L~~G~~VIID~tn~~~---------------~~R~~l~~l-----~~~g~~v~vV~Ld~p~e~l~~R~  122 (636)
                          ....+...+..|..||+|...+..               .....+..+     .....+-.+|+|++|.+.+.+|+
T Consensus        81 R~~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~~~Ri  160 (219)
T cd02030          81 RLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEVQKRI  160 (219)
T ss_pred             HHHHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHH
Confidence                112223345678899999963332               111112222     11122236899999999999999


Q ss_pred             HhcccccCCCCCCChHHHHHHHHhhhcC---CCccCCccEEEEeCCh--hHHHHHHHH
Q 006654          123 VKRIEHEGNLQGGKAAAVVNRMLQKKEL---PKLSEGFSRITLCQNE--NDVQAALDT  175 (636)
Q Consensus       123 ~~R~~~~~~~~~~vp~evi~rm~~~fe~---P~~~Egfd~Viii~~~--~~vdaiv~~  175 (636)
                      .+|.+...   ..++.+.+++....|+.   +. ++...+++.++..  ..++.++..
T Consensus       161 ~~R~~~~e---~~~~~~yl~~l~~~y~~~~~~~-~~~~~~~i~id~~~~~~~e~i~~~  214 (219)
T cd02030         161 KKRGDPHE---MKVTSAYLQDIENAYKKTFLPE-ISEHSEVLQYDWTEAGDTEKVVED  214 (219)
T ss_pred             HHcCCchh---hcccHHHHHHHHHHHHHHHHHh-hccCCCEEEEeCCChhhHHHHHHH
Confidence            99875321   13555555444443322   21 1122456666544  566666654

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=98.18  E-value=1.2e-05  Score=78.88  Aligned_cols=111  Identities=21%  Similarity=0.185  Sum_probs=67.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhcCCC------CCc-------HHHHHHHHHHHHhCC-------
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGK------SGT-------KVQCLTSASSALKKG-------   78 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir~~~------~~~-------~~~~~~~~~~~L~~G-------   78 (636)
                      +|.+.|+|||||||||+.|++.+.   .+...|+.|.+....      .+.       ....+......|.+|       
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~~p~   80 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDLDLLNKNLHDLLNGKEVELPI   80 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCCCCCCCccccHHHHHHHHHHHHCCCeeeccc
Confidence            478999999999999999998863   457789998886411      111       111222222334433       


Q ss_pred             -------------------CeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHH-HHHHHHhcccccCCCCCCChH
Q 006654           79 -------------------KSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKL-CISRSVKRIEHEGNLQGGKAA  138 (636)
Q Consensus        79 -------------------~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~-l~~R~~~R~~~~~~~~~~vp~  138 (636)
                                         .-+|++|.......-..+.+        ..|++++|.++ ++.|-..|....++   ...+
T Consensus        81 yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~~l~~~~d--------~~I~vd~~~~~~rl~rri~RD~~~rg---~~~~  149 (179)
T cd02028          81 YDFRTGKRRGYRKLKLPPSGVVILEGIYALNERLRSLLD--------IRVAVSGGVHLNRLLRRVVRDIQFRG---YSAE  149 (179)
T ss_pred             ceeECCccCCCceEEeCCCCEEEEecHHhcCHhHHhhcC--------EEEEEeCCccHHHHHHHHHHhHHhhC---CCHH
Confidence                               23777885543322222212        27899999998 77777777754332   3455


Q ss_pred             HHHHH
Q 006654          139 AVVNR  143 (636)
Q Consensus       139 evi~r  143 (636)
                      +++.+
T Consensus       150 ~~i~~  154 (179)
T cd02028         150 LTILM  154 (179)
T ss_pred             HHhhh
Confidence            55554

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PLN02348 phosphoribulokinase

Probab=98.16  E-value=1.6e-05  Score=86.44  Aligned_cols=120  Identities=16%  Similarity=0.230  Sum_probs=74.1

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcCC------------------CeEEeehhhhcC-CC-----CC---------c
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSAR------------------PWARICQDTINK-GK-----SG---------T   63 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~------------------~~~~Is~D~ir~-~~-----~~---------~   63 (636)
                      ...|.+|-+.|++||||||||+.|+..++.                  ....|+.|++.. ..     .+         .
T Consensus        46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t~ldP~a~d  125 (395)
T PLN02348         46 DDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANN  125 (395)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCccCCccccc
Confidence            356889999999999999999999998752                  246788888741 10     01         1


Q ss_pred             HHHHHHHHHHHHhCCC------------------------eEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHH
Q 006654           64 KVQCLTSASSALKKGK------------------------SVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCI  119 (636)
Q Consensus        64 ~~~~~~~~~~~L~~G~------------------------~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~  119 (636)
                      .+ .+......|++|+                        .+|++|.......  .+.  ...+   ..||+++|.++..
T Consensus       126 fD-ll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~e~I~p~~VVIVEGlh~L~~e--~lr--~l~D---~~IyVd~~~dvrl  197 (395)
T PLN02348        126 FD-LMYEQVKALKEGKAVEKPIYNHVTGLLDPPELIEPPKILVIEGLHPMYDE--RVR--DLLD---FSIYLDISDDVKF  197 (395)
T ss_pred             HH-HHHHHHHHHHCCCcEEeeccccCCCCcCCcEEcCCCcEEEEechhhccCc--ccc--ccCc---EEEEEECCHHHHH
Confidence            22 2344455666663                        3566763321111  110  1111   3789999999998


Q ss_pred             HHHHhcccccCCCCCCChHHHHHHHHhh
Q 006654          120 SRSVKRIEHEGNLQGGKAAAVVNRMLQK  147 (636)
Q Consensus       120 ~R~~~R~~~~~~~~~~vp~evi~rm~~~  147 (636)
                      .|..+|.....+   ...+++..++.++
T Consensus       198 ~RRI~RD~~eRG---~S~EeV~~~i~ar  222 (395)
T PLN02348        198 AWKIQRDMAERG---HSLESIKASIEAR  222 (395)
T ss_pred             HHHHHhhHhhcC---CCHHHHHHHHHhc
Confidence            888888754221   3456666665443

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=98.14  E-value=1.4e-05  Score=79.10  Aligned_cols=112  Identities=21%  Similarity=0.282  Sum_probs=66.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCC---C----eEEeehhhhcC------------CC--CC-----cHHHHHHHHHHHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSAR---P----WARICQDTINK------------GK--SG-----TKVQCLTSASSAL   75 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~---~----~~~Is~D~ir~------------~~--~~-----~~~~~~~~~~~~L   75 (636)
                      +|.+.|+|||||||||++|+..++.   .    ...++.|.+..            ..  +.     ..+.+ ......|
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l-~~~l~~L   79 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLL-KEDLKAL   79 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHH-HHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHH-HHHHHHH
Confidence            5889999999999999999998862   2    23455554420            00  01     12233 3344456


Q ss_pred             hCC-------------------------CeEEEeCCCC-CHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccccc
Q 006654           76 KKG-------------------------KSVFLDRCNL-EREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHE  129 (636)
Q Consensus        76 ~~G-------------------------~~VIID~tn~-~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~  129 (636)
                      ++|                         .-||++|... ..+.-..+.++        .||++++.++++.|...|....
T Consensus        80 ~~g~~i~~p~yd~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~l~~l~D~--------~ifld~~~~~~l~Rri~RD~~~  151 (194)
T PF00485_consen   80 KNGGSIEIPIYDFSTGDRDPWIIIISPSDIVIVEGIYALYDEELRDLFDL--------KIFLDADEDLRLERRIQRDVAE  151 (194)
T ss_dssp             HTTSCEEEEEEETTTTEEEEEEEEEES-SEEEEEETTTTSSHCHGGG-SE--------EEEEEE-HHHHHHHHHHHHHHH
T ss_pred             hCCCcccccccccccccceeeeeecCCCCEEEEcccceeeeeeeccccee--------EEEecccHHHHHHHHhhhhccc
Confidence            544                         2378888552 22221222222        6799999999999999997643


Q ss_pred             CCCCCCChHHHHHHHH
Q 006654          130 GNLQGGKAAAVVNRML  145 (636)
Q Consensus       130 ~~~~~~vp~evi~rm~  145 (636)
                      .+   ..+++++.++.
T Consensus       152 rG---~~~~~~~~~~~  164 (194)
T PF00485_consen  152 RG---RSPEEVIAQYE  164 (194)
T ss_dssp             S----S-HHHHHHHHH
T ss_pred             cC---CcceeEEEEee
Confidence            22   35566665544

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.13  E-value=3.9e-05  Score=75.86  Aligned_cols=36  Identities=28%  Similarity=0.444  Sum_probs=29.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcC-CCeEEeehhhhc
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSA-RPWARICQDTIN   57 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~-~~~~~Is~D~ir   57 (636)
                      +|.|+|++||||||+++.|...++ .....++.|.+.
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~   37 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYY   37 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccc
Confidence            478999999999999999998863 235667777764

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=98.13  E-value=1.9e-05  Score=79.19  Aligned_cols=113  Identities=18%  Similarity=0.153  Sum_probs=69.7

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCC-------------C-------Cc---------------
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK-------------S-------GT---------------   63 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~-------------~-------~~---------------   63 (636)
                      .|..|.|+|.+||||||+++.|++.+|  +.+++.|.+....             +       +.               
T Consensus         5 ~~~~IglTG~iGsGKStv~~~l~~~lg--~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~   82 (204)
T PRK14733          5 NTYPIGITGGIASGKSTATRILKEKLN--LNVVCADTISREITKKPSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKE   82 (204)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHcC--CeEEeccHHHHHHHCchHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHH
Confidence            467899999999999999999998888  4567766653110             0       00               


Q ss_pred             ---------HHHHHHHHHHHHhCC--CeEEEeCCCCCHHHH--HHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 006654           64 ---------KVQCLTSASSALKKG--KSVFLDRCNLEREQR--TDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEG  130 (636)
Q Consensus        64 ---------~~~~~~~~~~~L~~G--~~VIID~tn~~~~~R--~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~  130 (636)
                               +..+...+.+.+...  ..+|+|..-+-+...  ..+.+        .++++.+|.++..+|+.+|...  
T Consensus        83 ~~~~Le~i~HP~V~~~~~~~~~~~~~~~vv~eipLL~E~~~~~~~~~D--------~vi~V~a~~e~ri~Rl~~Rd~~--  152 (204)
T PRK14733         83 AKKWLEDYLHPVINKEIKKQVKESDTVMTIVDIPLLGPYNFRHYDYLK--------KVIVIKADLETRIRRLMERDGK--  152 (204)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHhcCCCeEEEEechhhhccCchhhhCC--------EEEEEECCHHHHHHHHHHcCCC--
Confidence                     011112333333322  356777733322111  11111        2778899999999999999652  


Q ss_pred             CCCCCChHHHHHHHHhhh
Q 006654          131 NLQGGKAAAVVNRMLQKK  148 (636)
Q Consensus       131 ~~~~~vp~evi~rm~~~f  148 (636)
                           ..+++..++..++
T Consensus       153 -----s~~~a~~ri~~Q~  165 (204)
T PRK14733        153 -----NRQQAVAFINLQI  165 (204)
T ss_pred             -----CHHHHHHHHHhCC
Confidence                 3466677777665

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=98.12  E-value=2.1e-06  Score=77.64  Aligned_cols=95  Identities=23%  Similarity=0.197  Sum_probs=55.0

Q ss_pred             EEEEccCCCcHHHHHHHHHHHcCCCeEEeeh-----------hhhc-CC-CCCcH---HHHHHHHHHH---HhCCCeEEE
Q 006654           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQ-----------DTIN-KG-KSGTK---VQCLTSASSA---LKKGKSVFL   83 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~-----------D~ir-~~-~~~~~---~~~~~~~~~~---L~~G~~VII   83 (636)
                      |+|.|+|||||||+|+.|++.++  ..+.+.           +... .. .....   ......+...   ...+..+|+
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii   78 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERLG--DIIRDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIRRMNKGRNIII   78 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHC--HHHHHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHHHHTTTSCEEE
T ss_pred             CEEECCCCCCHHHHHHHHHHHHC--cHHHHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhcccccCCcEEE
Confidence            68999999999999999999863  111110           0000 00 11111   1223333332   456778999


Q ss_pred             eCCCCCHHHHHHHHHhCCCCCeEEE-EEEeCCHHHHHHHHHhcccc
Q 006654           84 DRCNLEREQRTDFVKLGGPEVDVHA-VVLDLPAKLCISRSVKRIEH  128 (636)
Q Consensus        84 D~tn~~~~~R~~l~~l~~~g~~v~v-V~Ld~p~e~l~~R~~~R~~~  128 (636)
                      |+.......         ....... |+|++|.+++.+|+..|...
T Consensus        79 d~~~~~~~~---------~~~~~~~~i~L~~~~e~~~~R~~~R~~~  115 (129)
T PF13238_consen   79 DGILSNLEL---------ERLFDIKFIFLDCSPEELRKRLKKRGRK  115 (129)
T ss_dssp             EESSEEECE---------TTEEEESSEEEE--HHHHHHHHHCTTTS
T ss_pred             ecccchhcc---------cccceeeEEEEECCHHHHHHHHHhCCCC
Confidence            995432211         1111223 89999999999999999875

...

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=98.12  E-value=1.7e-05  Score=79.56  Aligned_cols=36  Identities=31%  Similarity=0.394  Sum_probs=28.9

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i   56 (636)
                      ..+.+|.++|.+||||||+++.|.. +|  +..++.|.+
T Consensus         3 ~~~~~igitG~igsGKSt~~~~l~~-~g--~~v~d~D~i   38 (208)
T PRK14731          3 SLPFLVGVTGGIGSGKSTVCRFLAE-MG--CELFEADRV   38 (208)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH-CC--CeEEeccHH
Confidence            3467899999999999999999986 56  566776644

>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]

Probab=98.11  E-value=1.5e-05  Score=75.22  Aligned_cols=105  Identities=20%  Similarity=0.277  Sum_probs=68.1

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhcCCCCC-------cHHH---HHHHHHHHH-hCCCeE
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKSG-------TKVQ---CLTSASSAL-KKGKSV   81 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir~~~~~-------~~~~---~~~~~~~~L-~~G~~V   81 (636)
                      ..++..+|+|.|++||||||+|-+|.+.+.   .....+|.|.+|.+...       .+.+   .+..+.... ..|--.
T Consensus        27 ~~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F~a~dR~ENIRRigeVaKLFADag~ic  106 (207)
T KOG0635|consen   27 LKQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFKAEDRNENIRRIGEVAKLFADAGVIC  106 (207)
T ss_pred             hcCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCcchhhhhhhHHHHHHHHHHHhccceee
Confidence            345667899999999999999999987653   34567899998865322       1111   122333333 333333


Q ss_pred             EEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHH
Q 006654           82 FLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRS  122 (636)
Q Consensus        82 IID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~  122 (636)
                      |.+-...++..|..-..+ .+.  .+.-||+++|.++|.+|-
T Consensus       107 iaSlISPYR~dRdacRel~~~~--~FiEvfmdvpl~vcE~RD  146 (207)
T KOG0635|consen  107 IASLISPYRKDRDACRELLPEG--DFIEVFMDVPLEVCEARD  146 (207)
T ss_pred             eehhcCchhccHHHHHHhccCC--CeEEEEecCcHHHhhccC
Confidence            434444555667666666 443  566789999999999874

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=98.09  E-value=1.4e-05  Score=79.53  Aligned_cols=109  Identities=22%  Similarity=0.197  Sum_probs=66.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC--------------CC--------Cc----------------
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG--------------KS--------GT----------------   63 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~--------------~~--------~~----------------   63 (636)
                      +|.++|.+||||||+++.+.+ .|  +..++.|.+...              .+        +.                
T Consensus         1 ~i~itG~~gsGKst~~~~l~~-~g--~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~   77 (196)
T PRK14732          1 LIGITGMIGGGKSTALKILEE-LG--AFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEK   77 (196)
T ss_pred             CEEEECCCCccHHHHHHHHHH-CC--CEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHH
Confidence            478999999999999998864 56  667887776211              00        10                


Q ss_pred             --------HHHHHHHHHHHH---hCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCC
Q 006654           64 --------KVQCLTSASSAL---KKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNL  132 (636)
Q Consensus        64 --------~~~~~~~~~~~L---~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~  132 (636)
                              +..+...+.+.+   ..+..+|+|..-+.+.....+.+        .++++.+|.++..+|+.+|..     
T Consensus        78 ~~~L~~i~hP~v~~~~~~~~~~~~~~~~vi~e~pLL~E~~~~~~~D--------~vi~V~a~~e~r~~RL~~R~g-----  144 (196)
T PRK14732         78 LKALNELIHPLVRKDFQKILQTTAEGKLVIWEVPLLFETDAYTLCD--------ATVTVDSDPEESILRTISRDG-----  144 (196)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHhcCCcEEEEeeeeeEcCchhhCC--------EEEEEECCHHHHHHHHHHcCC-----
Confidence                    001112222222   23445677774443333233322        278899999999999999954     


Q ss_pred             CCCChHHHHHHHHhhh
Q 006654          133 QGGKAAAVVNRMLQKK  148 (636)
Q Consensus       133 ~~~vp~evi~rm~~~f  148 (636)
                        ...+++..++..++
T Consensus       145 --~s~e~a~~ri~~Q~  158 (196)
T PRK14732        145 --MKKEDVLARIASQL  158 (196)
T ss_pred             --CCHHHHHHHHHHcC
Confidence              23466777776654

>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands

Probab=98.08  E-value=1.1e-06  Score=79.21  Aligned_cols=98  Identities=9%  Similarity=0.086  Sum_probs=71.5

Q ss_pred             CCchhhHHHHHHHHhhc---CCCCCCCCCCcccCCCCCCcccccccccccCcceecccccc-cchhhcccCChhhhhhhc
Q 006654          194 NPDAKIQLGIMKFLKKV---DAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDA-AGEEVKGTENPEVASVNQ  269 (636)
Q Consensus       194 ~~~~~v~~~i~k~l~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~s~l~  269 (636)
                      .+...++..+.+..++.   .....+|.-.         .+...++.+.+..|.+.+.+.. ......+.+..++..|++
T Consensus        17 ai~~~~g~~~~~~~~~~~~~~~~~~~G~~~---------~t~~~~l~~~~Iih~v~P~~~~~~~~~~~~~L~~~~~~~l~   87 (118)
T PF01661_consen   17 AIFKAAGPALQEECKEIKKKGGELPVGEVI---------VTPGGNLPCKYIIHAVGPTYNSPGEKNSYEALESAYRNALQ   87 (118)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHSSSTTSEE---------EEEETTSSSSEEEEEEEEETTTSTSTTHHHHHHHHHHHHHH
T ss_pred             HHHHhchHHHHHHHHHhhcccCcccCCCee---------eecCCCccccceEEEecceeccccccccHHHHHHHHHHHHH
Confidence            45556666666555542   1234555411         1344566688888887776642 225567788889999999


Q ss_pred             ccCCCCCCccccccCccCCCCCChHHHHHHH
Q 006654          270 NGSSSDVPTLAFPSLSTSDFQFNNEKASDVI  300 (636)
Q Consensus       270 ~~~~~~~~SiAfPaIStG~~gfP~~~aa~Ii  300 (636)
                      .+++++++|||||+|+||++|||.+++++|+
T Consensus        88 ~a~~~~~~sIa~P~ig~G~~g~~~~~~a~i~  118 (118)
T PF01661_consen   88 KAEENGIKSIAFPAIGTGIGGFPWDEVAEIM  118 (118)
T ss_dssp             HHHHTTTSEEEEESTTSSTTSBTHHHHHHHH
T ss_pred             HHHHcCCcccccCcccCCCCCCCHHHHHhhC
Confidence            9999999999999999999999999999986

Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.04  E-value=3.6e-05  Score=78.25  Aligned_cols=122  Identities=22%  Similarity=0.246  Sum_probs=69.7

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcCC---CeEE-eehhhhcCC--------C------CC--cHHHHHHHHHHHH
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSAR---PWAR-ICQDTINKG--------K------SG--TKVQCLTSASSAL   75 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~---~~~~-Is~D~ir~~--------~------~~--~~~~~~~~~~~~L   75 (636)
                      ...++.++.|.|++|||||||++.|+..+..   .... +..|.+...        .      ..  ....+. .+...|
T Consensus        29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~-~~l~~l  107 (229)
T PRK09270         29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAPETFDVAGLA-ALLRRL  107 (229)
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccCCCCCCCHHHHH-HHHHHH
Confidence            3467899999999999999999999877652   1222 554443210        0      00  111221 222222


Q ss_pred             hCC---------------------------CeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           76 KKG---------------------------KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        76 ~~G---------------------------~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      ..|                           ..+|+|+...... ...|..+ ...+   .++++++|.+++++|...|..
T Consensus       108 ~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~-~~~~~~l~~~~D---~vi~v~~~~~~~~~R~~~R~~  183 (229)
T PRK09270        108 RAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLD-EEPWRRLAGLFD---FTIFLDAPAEVLRERLVARKL  183 (229)
T ss_pred             HcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeec-cccHHHHHhhCC---EEEEEECCHHHHHHHHHHHHH
Confidence            211                           2367788544321 1233223 2222   378999999999999999964


Q ss_pred             ccCCCCCCChHHHHHHHHh
Q 006654          128 HEGNLQGGKAAAVVNRMLQ  146 (636)
Q Consensus       128 ~~~~~~~~vp~evi~rm~~  146 (636)
                      ..+    ...+++..++.+
T Consensus       184 ~~g----~s~~~~~~~~~~  198 (229)
T PRK09270        184 AGG----LSPEAAEAFVLR  198 (229)
T ss_pred             hcC----CCHHHHHHHHHh
Confidence            222    244556666653

>PLN02422 dephospho-CoA kinase

Probab=98.01  E-value=2.9e-05  Score=79.31  Aligned_cols=109  Identities=22%  Similarity=0.183  Sum_probs=67.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC--------------CC--------Cc----------------
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG--------------KS--------GT----------------   63 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~--------------~~--------~~----------------   63 (636)
                      +|.+.|.+||||||+++.|+ ++|  +.++|.|.+...              .+        +.                
T Consensus         3 ~igltG~igsGKstv~~~l~-~~g--~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~   79 (232)
T PLN02422          3 VVGLTGGIASGKSTVSNLFK-SSG--IPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSK   79 (232)
T ss_pred             EEEEECCCCCCHHHHHHHHH-HCC--CeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHH
Confidence            68999999999999999998 567  677888776211              00        10                


Q ss_pred             --------HHHHHHHHHHHH----hCC-CeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 006654           64 --------KVQCLTSASSAL----KKG-KSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEG  130 (636)
Q Consensus        64 --------~~~~~~~~~~~L----~~G-~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~  130 (636)
                              +..+...+.+.+    ..+ ..+|+|..-+-+.....+.+        .++++++|.++..+|+.+|..   
T Consensus        80 ~~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~eipLL~E~~~~~~~D--------~vI~V~a~~e~ri~RL~~R~g---  148 (232)
T PLN02422         80 RQLLNRLLAPYISSGIFWEILKLWLKGCKVIVLDIPLLFETKMDKWTK--------PVVVVWVDPETQLERLMARDG---  148 (232)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEehhhhhcchhhhCC--------EEEEEECCHHHHHHHHHHcCC---
Confidence                    011112221111    123 45777874333322222211        278899999999999999964   


Q ss_pred             CCCCCChHHHHHHHHhhh
Q 006654          131 NLQGGKAAAVVNRMLQKK  148 (636)
Q Consensus       131 ~~~~~vp~evi~rm~~~f  148 (636)
                          -..+++.+++..++
T Consensus       149 ----~s~eea~~Ri~~Q~  162 (232)
T PLN02422        149 ----LSEEQARNRINAQM  162 (232)
T ss_pred             ----CCHHHHHHHHHHcC
Confidence                24466777776655

>PRK07429 phosphoribulokinase; Provisional

Probab=98.01  E-value=7.3e-05  Score=80.21  Aligned_cols=119  Identities=23%  Similarity=0.322  Sum_probs=72.1

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcCC-CeEEeehhhhcC---------CCC-----CcHHHHHHHHHHHHhCC---
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSAR-PWARICQDTINK---------GKS-----GTKVQCLTSASSALKKG---   78 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~-~~~~Is~D~ir~---------~~~-----~~~~~~~~~~~~~L~~G---   78 (636)
                      ..+|.+|.+.|++||||||+++.|+..++. ....++.|.+..         +..     ......+....+.|..|   
T Consensus         5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~l~p~~~~~d~l~~~l~~L~~g~~I   84 (327)
T PRK07429          5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHSYDRKQRKELGITALDPRANNLDIMYEHLKALKTGQPI   84 (327)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccccCCHHHHHhcCCcccCccchHHHHHHHHHHHHHCCCce
Confidence            357889999999999999999999988763 245667776631         100     01112223233444443   


Q ss_pred             ---------------------CeEEEeCCC-CCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCC
Q 006654           79 ---------------------KSVFLDRCN-LEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGK  136 (636)
Q Consensus        79 ---------------------~~VIID~tn-~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~v  136 (636)
                                           ..||+|+.. +.......+.++        .||+++|.++...|..+|......   ..
T Consensus        85 ~~P~yd~~~g~~~~~~~i~p~~iVIvEG~~~l~~~~lr~~~D~--------~I~Vda~~evr~~Rri~Rd~~rrG---~s  153 (327)
T PRK07429         85 LKPIYNHETGTFDPPEYIEPNKIVVVEGLHPLYDERVRELYDF--------KVYLDPPEEVKIAWKIKRDMAKRG---HT  153 (327)
T ss_pred             ecceeecCCCCcCCcEecCCCcEEEEechhhcCcHhHHhhCCE--------EEEEECCHHHHHHHHHHHHHhhcC---CC
Confidence                                 247778853 332222233233        789999999998887777754221   34


Q ss_pred             hHHHHHHHHh
Q 006654          137 AAAVVNRMLQ  146 (636)
Q Consensus       137 p~evi~rm~~  146 (636)
                      .+++..++.+
T Consensus       154 ~eei~~~i~~  163 (327)
T PRK07429        154 YEQVLAEIEA  163 (327)
T ss_pred             HHHHHHHHHH
Confidence            4556665544

>PRK05439 pantothenate kinase; Provisional

Probab=98.00  E-value=2e-05  Score=83.71  Aligned_cols=110  Identities=15%  Similarity=0.146  Sum_probs=66.6

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcC-----CCeEEeehhhhcCC-----------CCC---cH-HHHHHHHHHHH
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTINKG-----------KSG---TK-VQCLTSASSAL   75 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~-----~~~~~Is~D~ir~~-----------~~~---~~-~~~~~~~~~~L   75 (636)
                      ..+.|.+|.+.|+|||||||+|+.|+..++     .....|+.|.+...           ..+   +. ...+......|
T Consensus        82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~Pes~D~~~l~~~L~~L  161 (311)
T PRK05439         82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGFPESYDMRALLRFLSDV  161 (311)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCCCcccccHHHHHHHHHHH
Confidence            456789999999999999999999987553     23567787776311           111   11 12233334444


Q ss_pred             hCCC---------------------------eEEEeCCCCCHHHHH-HHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 006654           76 KKGK---------------------------SVFLDRCNLEREQRT-DFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI  126 (636)
Q Consensus        76 ~~G~---------------------------~VIID~tn~~~~~R~-~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~  126 (636)
                      ++|+                           -+|++|.+.-...+. .|..+ .-.+   ..||+++|.+++.+|..+|.
T Consensus       162 k~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D---~~IfVda~~~~~~~w~i~R~  238 (311)
T PRK05439        162 KSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFD---FSIYVDADEDLIEKWYIERF  238 (311)
T ss_pred             HcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCC---EEEEEECCHHHHHHHHHHHH
Confidence            4432                           256677553322221 22222 1122   26899999999999888886


Q ss_pred             cc
Q 006654          127 EH  128 (636)
Q Consensus       127 ~~  128 (636)
                      .+
T Consensus       239 ~~  240 (311)
T PRK05439        239 LK  240 (311)
T ss_pred             HH
Confidence            53

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=98.00  E-value=2.3e-05  Score=78.28  Aligned_cols=33  Identities=24%  Similarity=0.401  Sum_probs=28.6

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i   56 (636)
                      .+|.++|.+||||||+++.|+. +|  +.+++.|.+
T Consensus         2 ~~igitG~igsGKst~~~~l~~-~g--~~vid~D~i   34 (200)
T PRK14734          2 LRIGLTGGIGSGKSTVADLLSS-EG--FLIVDADQV   34 (200)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CC--CeEEeCcHH
Confidence            4689999999999999999987 66  678998865

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=97.95  E-value=0.00016  Score=69.39  Aligned_cols=140  Identities=17%  Similarity=0.253  Sum_probs=90.0

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC-CCeEEe-----eh--hh------------hc----CC-CCCcHHH------H
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA-RPWARI-----CQ--DT------------IN----KG-KSGTKVQ------C   67 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~-~~~~~I-----s~--D~------------ir----~~-~~~~~~~------~   67 (636)
                      |..+|+++||+|+||-|+.......+. .+-.++     ..  |.            +.    ++ ...+|..      +
T Consensus         4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Ygi   83 (192)
T COG3709           4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAGGEDHDALSEAEFNTRAGQGAFALSWQAHGLSYGI   83 (192)
T ss_pred             CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCCcccccccCHHHHHHHhhcCceeEEehhcCccccC
Confidence            678999999999999999888776654 221222     11  11            10    00 0012221      1


Q ss_pred             HHHHHHHHhCCCeEEEeCC-CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHh
Q 006654           68 LTSASSALKKGKSVFLDRC-NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ  146 (636)
Q Consensus        68 ~~~~~~~L~~G~~VIID~t-n~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~  146 (636)
                      -..+...|..|..||+.+. ..-+..|..|-       ...++.+.++.+++.+|+.+|++       +..+++..|+.+
T Consensus        84 p~eId~wl~~G~vvl~NgSRa~Lp~arrry~-------~Llvv~ita~p~VLaqRL~~RGR-------Es~eeI~aRL~R  149 (192)
T COG3709          84 PAEIDLWLAAGDVVLVNGSRAVLPQARRRYP-------QLLVVCITASPEVLAQRLAERGR-------ESREEILARLAR  149 (192)
T ss_pred             chhHHHHHhCCCEEEEeccHhhhHHHHHhhh-------cceeEEEecCHHHHHHHHHHhcc-------CCHHHHHHHHHh
Confidence            2667788999999998883 22334444442       34578889999999999999998       467888888876


Q ss_pred             hhcCCCccCCccEEEEeCChhHHHHHHHH
Q 006654          147 KKELPKLSEGFSRITLCQNENDVQAALDT  175 (636)
Q Consensus       147 ~fe~P~~~Egfd~Viii~~~~~vdaiv~~  175 (636)
                      .-..-.  .+ .+|+.+++..+.+...+.
T Consensus       150 ~a~~~~--~~-~dv~~idNsG~l~~ag~~  175 (192)
T COG3709         150 AARYTA--GP-GDVTTIDNSGELEDAGER  175 (192)
T ss_pred             hccccc--CC-CCeEEEcCCCcHHHHHHH
Confidence            543321  23 356677777777666655

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=97.94  E-value=6.1e-05  Score=77.58  Aligned_cols=34  Identities=26%  Similarity=0.300  Sum_probs=29.8

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i   56 (636)
                      .+|.|.|..||||||+++.|.+.+|  +..||.|.+
T Consensus         2 ~iIGlTGgIgSGKStVs~~L~~~~G--~~viDaD~i   35 (244)
T PTZ00451          2 ILIGLTGGIACGKSTVSRILREEHH--IEVIDADLV   35 (244)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC--CeEEehHHH
Confidence            4689999999999999999998877  667888776

>PLN02772 guanylate kinase

Probab=97.93  E-value=0.00014  Score=79.28  Aligned_cols=134  Identities=16%  Similarity=0.173  Sum_probs=74.0

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCe----EEe-----------------ehhhhc----CCCCCcH--------H
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPW----ARI-----------------CQDTIN----KGKSGTK--------V   65 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~----~~I-----------------s~D~ir----~~~~~~~--------~   65 (636)
                      ...+++|+||+|+||+|+.++|.+.++..+    .+.                 +.+.+.    .+.+..+        -
T Consensus       134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~YG  213 (398)
T PLN02772        134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYG  213 (398)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCcccc
Confidence            456899999999999999999988653111    111                 111110    1111100        0


Q ss_pred             HHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHH
Q 006654           66 QCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRML  145 (636)
Q Consensus        66 ~~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~  145 (636)
                      .-...+...+++|+.+|+|-   ...-+..+.+..  -..+.++....+.+++.+|+..|...       ..+.+.+|+.
T Consensus       214 Tsk~~V~~vl~~Gk~vILdL---D~qGar~Lr~~~--l~~v~IFI~PPSlEeLe~RL~~RGte-------seE~I~kRL~  281 (398)
T PLN02772        214 TSIEAVEVVTDSGKRCILDI---DVQGARSVRASS--LEAIFIFICPPSMEELEKRLRARGTE-------TEEQIQKRLR  281 (398)
T ss_pred             ccHHHHHHHHHhCCcEEEeC---CHHHHHHHHHhc--CCeEEEEEeCCCHHHHHHHHHhcCCC-------CHHHHHHHHH
Confidence            11255677789999999986   333333332221  11233444456689999999999762       3445555554


Q ss_pred             hhh-cCC--CccCCccEEEEeC
Q 006654          146 QKK-ELP--KLSEGFSRITLCQ  164 (636)
Q Consensus       146 ~~f-e~P--~~~Egfd~Viii~  164 (636)
                      ... +..  .....|+.+++-+
T Consensus       282 ~A~~Ei~~~~~~~~fD~vIvND  303 (398)
T PLN02772        282 NAEAELEQGKSSGIFDHILYND  303 (398)
T ss_pred             HHHHHHhhccccCCCCEEEECC
Confidence            431 221  1123467765543

>PRK06761 hypothetical protein; Provisional

Probab=97.93  E-value=3.4e-05  Score=81.00  Aligned_cols=106  Identities=22%  Similarity=0.219  Sum_probs=66.4

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEe----ehhhhcC----CCC-CcHH---HH--------HHHHHHHHhCCC
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARI----CQDTINK----GKS-GTKV---QC--------LTSASSALKKGK   79 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~I----s~D~ir~----~~~-~~~~---~~--------~~~~~~~L~~G~   79 (636)
                      ..+|++.|+|||||||+++.+++.+......+    +.|....    +.. .+..   ..        .....+.+..|.
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d~~~~~~~~~eer~~~l~~~~~f~~~l~~~~~~~g~   82 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPADYDGVACFTKEEFDRLLSNYPDFKEVLLKNVLKKGD   82 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchhhccccCCCHHHHHHHHHhhhHHHHHHHHHHHHcCC
Confidence            46899999999999999999999886321111    1121110    000 0111   11        124445667788


Q ss_pred             eEEEeCCCCCHHHHHHHHH-h-CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654           80 SVFLDRCNLEREQRTDFVK-L-GGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (636)
Q Consensus        80 ~VIID~tn~~~~~R~~l~~-l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~  128 (636)
                      .+|+-..-+...+|..+.. + ...  .+..++ .+|.+.+.+|...|..|
T Consensus        83 ~~i~~~~~l~~~yr~~~~~~~~~~~--~v~~~h-~~p~e~i~~R~~~rw~~  130 (282)
T PRK06761         83 YYLLPYRKIKNEFGDQFSDELFNDI--SKNDIY-ELPFDKNTELITDRWND  130 (282)
T ss_pred             eEEEEehhhhHHHhhhhhhhhcccc--eeeeee-cCCHHHHHHHHHHHHHH
Confidence            8888877777777776653 1 111  233344 99999999999999875

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.89  E-value=6.2e-05  Score=68.27  Aligned_cols=64  Identities=22%  Similarity=0.366  Sum_probs=45.0

Q ss_pred             EEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHH-HHHHHHHhCC--CeEEEeCC
Q 006654           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCL-TSASSALKKG--KSVFLDRC   86 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~-~~~~~~L~~G--~~VIID~t   86 (636)
                      |+|.|+||+||||+++.+++.++.++..++...+.....+...+.+ ..+..+-..+  .-+++|..
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~   67 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEI   67 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETG
T ss_pred             CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccc
Confidence            6899999999999999999999977788888777654444433333 3333333333  34778884

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=97.89  E-value=0.00024  Score=70.95  Aligned_cols=109  Identities=19%  Similarity=0.199  Sum_probs=64.0

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCe--EEeeh----hhhcCCC--CCcHHH------HHHHHHHHHhCC-----Ce
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPW--ARICQ----DTINKGK--SGTKVQ------CLTSASSALKKG-----KS   80 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~--~~Is~----D~ir~~~--~~~~~~------~~~~~~~~L~~G-----~~   80 (636)
                      ..+|++.|+=|+||||+|+.|+++++...  ..+..    |.+.+..  .....|      .++....++..+     ++
T Consensus         4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~~E~vednp~L~~FY~d~~~yaf~~QiyFL~~Rfk~~k~~~~~~~~i~drs   83 (216)
T COG1428           4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVFYELVEDNPFLDLFYEDPERYAFLLQIYFLLNRFKKIKKALSDKNNILDRS   83 (216)
T ss_pred             ccEEEEecccccCHHHHHHHHHHHhCCceeeecccCChHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHhcccccccCcc
Confidence            45799999999999999999999998321  11221    3332221  111111      113334444443     23


Q ss_pred             EEEeC----------CCCCHHHHHHHHHh---------CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654           81 VFLDR----------CNLEREQRTDFVKL---------GGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (636)
Q Consensus        81 VIID~----------tn~~~~~R~~l~~l---------~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~  128 (636)
                      |+-|.          -++.+....-+.++         ...+.+=.+|+|+++.+++++|+.+|++.
T Consensus        84 I~eD~~lf~~~~~~~g~~~~~e~~~Y~~L~~~~~~~l~~~p~~PdllIyLd~~~e~~l~RI~~RgR~  150 (216)
T COG1428          84 IFEDYFLFAKLNFAKGTLSPSEFKYYDDLYDNMLEELPYLPGRPDLLIYLDASLETLLRRIAKRGRP  150 (216)
T ss_pred             hhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHHhCCC
Confidence            33333          33444444333333         22334447899999999999999999874

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=97.89  E-value=0.00016  Score=81.76  Aligned_cols=37  Identities=22%  Similarity=0.341  Sum_probs=32.6

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir   57 (636)
                      .+.+|.+.|++||||||+|+.|++.++  +.+++.|.++
T Consensus       283 ~~~ii~i~G~sgsGKst~a~~la~~l~--~~~~d~g~~Y  319 (512)
T PRK13477        283 RQPIIAIDGPAGAGKSTVTRAVAKKLG--LLYLDTGAMY  319 (512)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcC--CeEecCCcee
Confidence            567899999999999999999999998  7788876654

>PRK07933 thymidylate kinase; Validated

Probab=97.88  E-value=0.00025  Score=71.54  Aligned_cols=106  Identities=23%  Similarity=0.289  Sum_probs=64.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcC---CCeEEeeh---------hhhc----CC--CC--Cc----------HHHHHHHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQ---------DTIN----KG--KS--GT----------KVQCLTSA   71 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~---------D~ir----~~--~~--~~----------~~~~~~~~   71 (636)
                      +|++-|+-||||||+++.|++.+.   ..+..+..         +.++    ..  ..  ..          +.+....+
T Consensus         2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~~~~~I   81 (213)
T PRK07933          2 LIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRAGARDEL   81 (213)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhhhhHHHH
Confidence            789999999999999999998764   12222211         1111    10  00  00          01112446


Q ss_pred             HHHHhCCCeEEEeCCCCCHH-------------HHHHHHHh-C--CCC--CeEEEEEEeCCHHHHHHHHHhccc
Q 006654           72 SSALKKGKSVFLDRCNLERE-------------QRTDFVKL-G--GPE--VDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        72 ~~~L~~G~~VIID~tn~~~~-------------~R~~l~~l-~--~~g--~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      ..+|..|..||.|...++.-             .-..|+.. .  ..+  .+=.+|+|++|.++..+|+.+|..
T Consensus        82 ~p~l~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~  155 (213)
T PRK07933         82 AGLLAAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRRAA  155 (213)
T ss_pred             HHHHhCCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhhcc
Confidence            66778899999999554432             11233332 2  112  233689999999999999999864

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=97.87  E-value=5.4e-05  Score=76.75  Aligned_cols=36  Identities=19%  Similarity=0.152  Sum_probs=28.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcC-----CCeEEeehhhhc
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTIN   57 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~-----~~~~~Is~D~ir   57 (636)
                      +|.+.|++||||||+|+.|+..+.     .....|+.|.+.
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~   41 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL   41 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence            477999999999999999998763     234567777663

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=97.87  E-value=3.9e-05  Score=75.47  Aligned_cols=110  Identities=19%  Similarity=0.223  Sum_probs=65.9

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCC----------------------CCc---------------
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK----------------------SGT---------------   63 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~----------------------~~~---------------   63 (636)
                      .+|.++|..||||||+++.|.+ +|  +..+|.|.+....                      .+.               
T Consensus         1 ~iIglTG~igsGKStv~~~l~~-~G--~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~   77 (180)
T PF01121_consen    1 MIIGLTGGIGSGKSTVSKILAE-LG--FPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPE   77 (180)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH-TT---EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHH-CC--CCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHH
Confidence            3689999999999999999988 77  7789987773110                      010               


Q ss_pred             ---------HHHHHHHHHHHHh---CCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCC
Q 006654           64 ---------KVQCLTSASSALK---KGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGN  131 (636)
Q Consensus        64 ---------~~~~~~~~~~~L~---~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~  131 (636)
                               +..+...+.+.+.   ....+|+|..-+.+.....+     .+   .++++.+|.++..+|+.+|...   
T Consensus        78 ~~~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e~pLL~E~~~~~~-----~D---~vi~V~a~~e~ri~Rl~~R~~~---  146 (180)
T PF01121_consen   78 KLKKLENIIHPLIREEIEKFIKRNKSEKVVVVEIPLLFESGLEKL-----CD---EVIVVYAPEEIRIKRLMERDGL---  146 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE-TTTTTTTGGGG-----SS---EEEEEE--HHHHHHHHHHHHTS---
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHhccCCCEEEEEcchhhhhhHhhh-----hc---eEEEEECCHHHHHHHHHhhCCC---
Confidence                     0111233333332   22568888855554422222     12   2778899999999999999752   


Q ss_pred             CCCCChHHHHHHHHhhh
Q 006654          132 LQGGKAAAVVNRMLQKK  148 (636)
Q Consensus       132 ~~~~vp~evi~rm~~~f  148 (636)
                          ..+++..++..++
T Consensus       147 ----~~~~~~~ri~~Q~  159 (180)
T PF01121_consen  147 ----SEEEAEARIASQM  159 (180)
T ss_dssp             ----THHHHHHHHHTS-
T ss_pred             ----cHHHHHHHHHhCC
Confidence                3455566666554

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>TIGR00017 cmk cytidylate kinase

Probab=97.85  E-value=0.00036  Score=70.71  Aligned_cols=35  Identities=23%  Similarity=0.410  Sum_probs=29.2

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhh
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT   55 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~   55 (636)
                      |+.+|.+.|++||||||+++.|+++++  +.+++.+.
T Consensus         1 ~~~~i~i~G~~GsGKst~~~~la~~~~--~~~~~~g~   35 (217)
T TIGR00017         1 MAMIIAIDGPSGAGKSTVAKAVAEKLG--YAYLDSGA   35 (217)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhC--CceeeCch
Confidence            456899999999999999999999988  55566543

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>PRK13974 thymidylate kinase; Provisional

Probab=97.82  E-value=0.00049  Score=69.22  Aligned_cols=108  Identities=16%  Similarity=0.168  Sum_probs=62.8

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCC--------CeEEee-----------hhhhcCCC----CCcH-----------H
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSAR--------PWARIC-----------QDTINKGK----SGTK-----------V   65 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~--------~~~~Is-----------~D~ir~~~----~~~~-----------~   65 (636)
                      ..+|++.|++||||||+++.|++.+..        .+....           ++.+....    ....           .
T Consensus         3 g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~~   82 (212)
T PRK13974          3 GKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRAQ   82 (212)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHH
Confidence            468999999999999999999987641        111111           01111110    0111           0


Q ss_pred             HHHHHHHHHHhCCCeEEEeCCCCCH------------HHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           66 QCLTSASSALKKGKSVFLDRCNLER------------EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        66 ~~~~~~~~~L~~G~~VIID~tn~~~------------~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      .+...+..+|..|..||.|....+.            .+-..+..+ ...-.+-.+++|++|.+++.+|+..|..
T Consensus        83 ~~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~d  157 (212)
T PRK13974         83 HVSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRKP  157 (212)
T ss_pred             HHHHHHHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccc
Confidence            1112356677888888888743322            112223222 2111233689999999999999987743

>cd02749 Macro Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases)

Probab=97.81  E-value=8.5e-06  Score=76.64  Aligned_cols=102  Identities=13%  Similarity=0.072  Sum_probs=74.8

Q ss_pred             CCchhhHHHHHHHHhhcCCCC--CCCCCCcccCCCCCCcccccccc-cccCcceecccccccc-hhhcccCChhhhhhhc
Q 006654          194 NPDAKIQLGIMKFLKKVDAPS--NTGSTASSTQDPVPPQITEEKNS-CLEGQEITSLLSDAAG-EEVKGTENPEVASVNQ  269 (636)
Q Consensus       194 ~~~~~v~~~i~k~l~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~l~~~~~s~l~  269 (636)
                      ++....+.++.+.+++.....  ++|.  ..+       +...+.+ +...-|.+.+.+.... ....+.+..++.+||.
T Consensus        35 ai~~~~g~~~~~~~~~~~~~~~~~~G~--~~~-------t~~~~~~~~~~vih~~~p~~~~~~~~~~~~~l~~a~~~~L~  105 (147)
T cd02749          35 AISKKAGKELEEESKKLRKELELQVGE--AVL-------TKGYNLDGAKYLIHIVGPKYNQGNNKAAFELLKNAYENCLK  105 (147)
T ss_pred             HHHHHhCHHHHHHHHHHhcccCCCCCC--EEE-------CcCCCCCcCCEEEEeCCCCCCCCCCchHHHHHHHHHHHHHH
Confidence            566666777777776644332  4554  111       2234555 7788887777666532 2345678889999999


Q ss_pred             ccCCCCCCccccccCccCCCCC------ChHHHHHHHHHHH
Q 006654          270 NGSSSDVPTLAFPSLSTSDFQF------NNEKASDVIIEKV  304 (636)
Q Consensus       270 ~~~~~~~~SiAfPaIStG~~gf------P~~~aa~Iiv~tv  304 (636)
                      .+...++.|||||.|+||++||      |.+.+++|+..++
T Consensus       106 ~~~~~~~~sIa~P~igtG~~g~~~~~~~~~~~~~~i~~~~~  146 (147)
T cd02749         106 EAEEKGIKSIAFPLIGTGPAGFPKDEREPWEDAIKIALEAA  146 (147)
T ss_pred             HHHHcCCCEEEECCcccccCCCCccccCCHHHHHHHHHHHh
Confidence            9999999999999999999999      9999999998875

Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes.

>PLN02318 phosphoribulokinase/uridine kinase

Probab=97.80  E-value=0.00013  Score=82.90  Aligned_cols=40  Identities=35%  Similarity=0.428  Sum_probs=31.9

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir   57 (636)
                      ...+.+|.+.|++||||||||+.|+..++ ....|+.|.+.
T Consensus        62 ~~~riIIGIaGpSGSGKTTLAk~LaglLp-~vgvIsmDdy~  101 (656)
T PLN02318         62 NDGIILVGVAGPSGAGKTVFTEKVLNFMP-SIAVISMDNYN  101 (656)
T ss_pred             CCCeEEEEEECCCCCcHHHHHHHHHhhCC-CcEEEEEccee
Confidence            34578999999999999999999998874 24567766653

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=97.77  E-value=0.00032  Score=68.58  Aligned_cols=144  Identities=17%  Similarity=0.112  Sum_probs=76.0

Q ss_pred             EccCCCcHHHHHHHHHHHcCC-CeE-Eeeh------------hhhcCCCCCcH------------HHHHHHHHHHHhCCC
Q 006654           26 VGAPGSGKSTFCEHVMRSSAR-PWA-RICQ------------DTINKGKSGTK------------VQCLTSASSALKKGK   79 (636)
Q Consensus        26 vG~PGSGKSTlAr~Lak~~~~-~~~-~Is~------------D~ir~~~~~~~------------~~~~~~~~~~L~~G~   79 (636)
                      =|+.||||||+++.|.+.+.. ... .+..            +.+........            ..+...+..+|..|.
T Consensus         2 EGiDGsGKtT~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~l~~g~   81 (186)
T PF02223_consen    2 EGIDGSGKTTQIRLLAEALKEKGYKVIITFPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPALKRGK   81 (186)
T ss_dssp             EESTTSSHHHHHHHHHHHHHHTTEEEEEEESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHHHHTTS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHcCCcccccCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            499999999999999987651 121 1210            11121111110            112245567889999


Q ss_pred             eEEEeCCCCC------------HHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHh
Q 006654           80 SVFLDRCNLE------------REQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ  146 (636)
Q Consensus        80 ~VIID~tn~~------------~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~  146 (636)
                      .||+|..-++            ...-..+... -.. .+=.+++|++|.+++.+|+..|....  ....-..+.++++..
T Consensus        82 ~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~-~PDl~~~Ldv~pe~~~~R~~~r~~~~--~~~~~~~~~~~~~~~  158 (186)
T PF02223_consen   82 IVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLP-KPDLTFFLDVDPEEALKRIAKRGEKD--DEEEEDLEYLRRVRE  158 (186)
T ss_dssp             EEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTT-E-SEEEEEECCHHHHHHHHHHTSSTT--TTTTHHHHHHHHHHH
T ss_pred             EEEEechhHHHHHhCccccCCcchhhhHHHHHhcCC-CCCEEEEEecCHHHHHHHHHcCCccc--hHHHHHHHHHHHHHH
Confidence            9999982111            1122222222 101 22258899999999999999998811  111223344444444


Q ss_pred             hhcCCCccCCccEEEEeCChhHHHHHHH
Q 006654          147 KKELPKLSEGFSRITLCQNENDVQAALD  174 (636)
Q Consensus       147 ~fe~P~~~Egfd~Viii~~~~~vdaiv~  174 (636)
                      .|..-..  ......+++....++++.+
T Consensus       159 ~y~~l~~--~~~~~~iid~~~~~e~v~~  184 (186)
T PF02223_consen  159 AYLELAK--DPNNWVIIDASRSIEEVHE  184 (186)
T ss_dssp             HHHHHHH--TTTTEEEEETTS-HHHHHH
T ss_pred             HHHHHHc--CCCCEEEEECCCCHHHHHh
Confidence            4322111  1123445555555666554

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.74  E-value=8.5e-05  Score=61.34  Aligned_cols=61  Identities=21%  Similarity=0.366  Sum_probs=41.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcC-CCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHh-
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSA-RPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-   99 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~-~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l-   99 (636)
                      +|+++|+|||||||+++.|++.++ ..+.+++.                          .+|+|+......+|.  ..+ 
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~--------------------------~~I~eg~~~~~~~~~--~~~~   52 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE--------------------------IVILEGLYASYKSRD--ARIR   52 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE--------------------------EEEecchhhhhhhHH--hhcc
Confidence            378899999999999999999852 23444543                          789999777666544  222 


Q ss_pred             CCCCCeEEEEEEeC
Q 006654          100 GGPEVDVHAVVLDL  113 (636)
Q Consensus       100 ~~~g~~v~vV~Ld~  113 (636)
                      ...+.   .+|+++
T Consensus        53 ~~~d~---~Iyld~   63 (69)
T cd02019          53 DLADL---KIYLDA   63 (69)
T ss_pred             ccccE---EEEEEe
Confidence            33333   566665

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK15453 phosphoribulokinase; Provisional

Probab=97.73  E-value=0.00037  Score=72.98  Aligned_cols=40  Identities=18%  Similarity=0.209  Sum_probs=32.5

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhc
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTIN   57 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir   57 (636)
                      .++.+|.++|.|||||||+|+.+++.++   .....++.|.+.
T Consensus         3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh   45 (290)
T PRK15453          3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFH   45 (290)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEeccccc
Confidence            3567899999999999999999988764   235678888775

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=97.70  E-value=0.00024  Score=74.43  Aligned_cols=114  Identities=22%  Similarity=0.338  Sum_probs=64.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCC-CeEEeehhhhcCC------CCC-----cH---HHHHHHHHHHHhCC--------
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSAR-PWARICQDTINKG------KSG-----TK---VQCLTSASSALKKG--------   78 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~-~~~~Is~D~ir~~------~~~-----~~---~~~~~~~~~~L~~G--------   78 (636)
                      +|.++|++||||||+++.|+..++. ....++.|.+..-      ..+     ..   ...+......|+.|        
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~~~p~~~~~d~l~~~l~~Lk~g~~i~~P~y   80 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGRKETGITALDPRANNFDLMYEQLKALKEGQAIEKPIY   80 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccccCCHHHHHHhhcccccccchhHHHHHHHHHHHHCCCCcccccc
Confidence            4789999999999999999987652 2456777765310      000     00   11122233344443        


Q ss_pred             ----------------CeEEEeCCC-CCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHH
Q 006654           79 ----------------KSVFLDRCN-LEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV  141 (636)
Q Consensus        79 ----------------~~VIID~tn-~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi  141 (636)
                                      ..+|+++.. +.......+.++        .||+++|.++...|..+|.....+   ...+++.
T Consensus        81 ~~~~~~~~~~~~i~~~~ivIvEG~~~l~~~~l~~~~D~--------~I~vd~~~e~r~~r~i~Rd~~rrG---~s~e~v~  149 (273)
T cd02026          81 NHVTGLIDPPELIKPTKIVVIEGLHPLYDERVRELLDF--------SVYLDISDEVKFAWKIQRDMAERG---HSLEDVL  149 (273)
T ss_pred             cccCCCcCCcEEcCCCCEEEEeeehhhCchhhhhhccE--------EEEEECChhHHHHHHHHHHHHHhC---CCHHHHH
Confidence                            236677743 222222222222        789999999997766666543221   2445566


Q ss_pred             HHHHh
Q 006654          142 NRMLQ  146 (636)
Q Consensus       142 ~rm~~  146 (636)
                      .++..
T Consensus       150 ~~i~~  154 (273)
T cd02026         150 ASIEA  154 (273)
T ss_pred             HHHHh
Confidence            65543

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=97.68  E-value=0.00015  Score=76.53  Aligned_cols=40  Identities=20%  Similarity=0.175  Sum_probs=30.1

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcC-----CCeEEeehhhh
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTI   56 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~-----~~~~~Is~D~i   56 (636)
                      ...|.+|.+.|++||||||+|+.|...+.     .....++.|.+
T Consensus        59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f  103 (290)
T TIGR00554        59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGF  103 (290)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccc
Confidence            35689999999999999999998765542     13455676665

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>smart00506 A1pp Appr-1"-p processing enzyme

Probab=97.67  E-value=1.3e-05  Score=73.86  Aligned_cols=66  Identities=6%  Similarity=0.022  Sum_probs=54.5

Q ss_pred             ccccccCcceecccccccchhhcccCChhhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHH
Q 006654          235 KNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVI  300 (636)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Ii  300 (636)
                      ++.+....|.+.+.+........+.+..++.+|+..+.+.+++|||||+|+||.+|||.+++++++
T Consensus        68 ~~~~~~Iih~~~p~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~sIa~P~igtG~~g~~~~~~~~~~  133 (133)
T smart00506       68 NLPAKYVIHAVGPRASGHSNEGFELLENAYRNCLELAIELGITSVAIPLIGTGIYGVPKDRSAQAL  133 (133)
T ss_pred             CCCCCEEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHhhC
Confidence            456677777777666653235567888899999999999999999999999999999999999874

Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji).

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=97.64  E-value=0.00037  Score=74.23  Aligned_cols=37  Identities=22%  Similarity=0.389  Sum_probs=31.2

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i   56 (636)
                      .++.+|+++||+||||||+|..|++.++  ..+|+.|.+
T Consensus         2 ~~~~~i~i~GptgsGKt~la~~la~~~~--~~iis~Ds~   38 (307)
T PRK00091          2 MKPKVIVIVGPTASGKTALAIELAKRLN--GEIISADSM   38 (307)
T ss_pred             CCceEEEEECCCCcCHHHHHHHHHHhCC--CcEEecccc
Confidence            3567999999999999999999999987  456777663

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.64  E-value=0.00016  Score=67.79  Aligned_cols=88  Identities=19%  Similarity=0.319  Sum_probs=52.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEE-e--------------------ehhhhc----CCCC-------C-cHHHHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWAR-I--------------------CQDTIN----KGKS-------G-TKVQCL   68 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~-I--------------------s~D~ir----~~~~-------~-~~~~~~   68 (636)
                      +|+|+||+||||||+++.|++.++..+.. +                    +.+.+.    .+.+       + ......
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~~~~yg~~~   80 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYYGTSK   80 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEcCEEecCcH
Confidence            47899999999999999999875422111 1                    111110    0000       0 000123


Q ss_pred             HHHHHHHhCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCH
Q 006654           69 TSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPA  115 (636)
Q Consensus        69 ~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~  115 (636)
                      ..+.+.++.|+.+|+|.      .+.....++.......+|++.+|+
T Consensus        81 ~~i~~~~~~g~~~il~~------~~~~~~~l~~~~~~~~~I~i~~~~  121 (137)
T cd00071          81 AAVEEALAEGKIVILEI------DVQGARQVKKSYPDAVSIFILPPD  121 (137)
T ss_pred             HHHHHHHhCCCeEEEEe------cHHHHHHHHHcCCCeEEEEEECCC
Confidence            55677788999999998      444444443344566788888883

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PLN02165 adenylate isopentenyltransferase

Probab=97.64  E-value=0.00048  Score=73.81  Aligned_cols=108  Identities=20%  Similarity=0.216  Sum_probs=65.4

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc--C---------------CC-----------CC--cHHHH-
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN--K---------------GK-----------SG--TKVQC-   67 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir--~---------------~~-----------~~--~~~~~-   67 (636)
                      +..+|+|+||+||||||+|..|++.++  ..+|+.|.+.  .               +.           .+  +.... 
T Consensus        42 ~g~iivIiGPTGSGKStLA~~LA~~l~--~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli~~~~~~~~~~sv~~F~  119 (334)
T PLN02165         42 KDKVVVIMGATGSGKSRLSVDLATRFP--SEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLLGELNPDDGELTASEFR  119 (334)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHcC--CceecCChheeECCcccccCCCCHHHHcCCChhhhheeccccceeeHHHHH
Confidence            455899999999999999999999987  4557766551  0               00           00  11111 


Q ss_pred             ---HHHHHHHHhCCCe-EEEeCCCCCHHHHHH-H-------HHh-CC-----CCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654           68 ---LTSASSALKKGKS-VFLDRCNLEREQRTD-F-------VKL-GG-----PEVDVHAVVLDLPAKLCISRSVKRIEH  128 (636)
Q Consensus        68 ---~~~~~~~L~~G~~-VIID~tn~~~~~R~~-l-------~~l-~~-----~g~~v~vV~Ld~p~e~l~~R~~~R~~~  128 (636)
                         ...+.+....|+. |++-+|.++-..-.. +       ..- +.     ..+.+.+++++.+.+++.+|+.+|-..
T Consensus       120 ~~a~~~I~~i~~~~~~PI~vGGTglYi~aLl~g~~dpe~~p~~tg~~~~s~~~~~~~~~i~l~~dr~~L~~RI~~Rvd~  198 (334)
T PLN02165        120 SLASLSISEITSRQKLPIVAGGSNSFIHALLADRFDPEIYPFSSGSSLISSDLRYDCCFIWVDVSEPVLFEYLSKRVDE  198 (334)
T ss_pred             HHHHHHHHHHHHCCCcEEEECChHHHHHHHHcCCCCCccChhhcCCCccccccCCCeEEEEECCCHHHHHHHHHHHHHH
Confidence               2333444556664 555556543322211 0       000 11     124456788999999999999999763

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=97.63  E-value=0.00018  Score=72.05  Aligned_cols=35  Identities=26%  Similarity=0.403  Sum_probs=30.3

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i   56 (636)
                      ++.+|.|+|.|||||||+|+.+.+ +|  +..++.|.+
T Consensus         1 ~~~iIglTG~igsGKStva~~~~~-~G--~~vidaD~v   35 (201)
T COG0237           1 MMLIIGLTGGIGSGKSTVAKILAE-LG--FPVIDADDV   35 (201)
T ss_pred             CceEEEEecCCCCCHHHHHHHHHH-cC--CeEEEccHH
Confidence            467899999999999999999988 77  677887776

>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]

Probab=97.63  E-value=0.00018  Score=71.22  Aligned_cols=37  Identities=27%  Similarity=0.353  Sum_probs=32.2

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir   57 (636)
                      -.+|-|.|+..|||||||+.|.+.++ ....|++|+++
T Consensus         4 ~~ivgiSG~TnsGKTTLak~l~~~f~-~~~lIhqDDFy   40 (225)
T KOG3308|consen    4 TLIVGISGCTNSGKTTLAKSLHRFFP-GCSLIHQDDFY   40 (225)
T ss_pred             EEEEEeecccCCCHhHHHHHHHHHcc-CCeeecccccc
Confidence            36788999999999999999999887 45689999985

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=97.60  E-value=0.00025  Score=78.06  Aligned_cols=33  Identities=21%  Similarity=0.288  Sum_probs=28.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir   57 (636)
                      .|.|+|.+||||||+++.|++ +|  +..||.|.+.
T Consensus         3 ~IgltG~igsGKStv~~~L~~-~G--~~vidaD~i~   35 (395)
T PRK03333          3 RIGLTGGIGAGKSTVAARLAE-LG--AVVVDADVLA   35 (395)
T ss_pred             EEEEECCCCCCHHHHHHHHHH-CC--CeEEehHHHH
Confidence            589999999999999999987 67  6778888773

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=97.60  E-value=0.0014  Score=66.04  Aligned_cols=110  Identities=25%  Similarity=0.314  Sum_probs=69.2

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCC---CeEEee-------hhhhc----CC--CCCc----------H-HHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSAR---PWARIC-------QDTIN----KG--KSGT----------K-VQCLTSA   71 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~---~~~~Is-------~D~ir----~~--~~~~----------~-~~~~~~~   71 (636)
                      +..+|++=|+=||||||+++.|.+.+..   .+...-       ...+|    ++  ....          + +.+...+
T Consensus         2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~~~i   81 (208)
T COG0125           2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLEEVI   81 (208)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4578999999999999999999877642   111111       02222    21  1111          1 1134666


Q ss_pred             HHHHhCCCeEEEeCCCCCHHHHH--------HHH----Hh-CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654           72 SSALKKGKSVFLDRCNLEREQRT--------DFV----KL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (636)
Q Consensus        72 ~~~L~~G~~VIID~tn~~~~~R~--------~l~----~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~  128 (636)
                      ..++..|..||+|.+..+.-..+        .|.    .. ...-.+-.+++|++|.++..+|+.+|...
T Consensus        82 ~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~  151 (208)
T COG0125          82 KPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGEL  151 (208)
T ss_pred             HHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCc
Confidence            77788999999999655443222        122    22 21002336899999999999999999775

>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]

Probab=97.50  E-value=0.00074  Score=69.68  Aligned_cols=111  Identities=17%  Similarity=0.209  Sum_probs=72.7

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcCC-CeEEeehhhhcCCCC------------C----------------c----
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSAR-PWARICQDTINKGKS------------G----------------T----   63 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~-~~~~Is~D~ir~~~~------------~----------------~----   63 (636)
                      ...-++|++-|+-|||||+||++|+++++. .|..+..|++.-...            +                .    
T Consensus        68 ~enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~dlsa~  147 (393)
T KOG3877|consen   68 HENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGDLSAA  147 (393)
T ss_pred             cccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCccHHHH
Confidence            344579999999999999999999999982 222234444421100            0                0    


Q ss_pred             ---------HHHHHHHHHHHHhCCCeEEEeCCCCCH---------------HHHHHHHHh-C----CCCCeEEEEEEeCC
Q 006654           64 ---------KVQCLTSASSALKKGKSVFLDRCNLER---------------EQRTDFVKL-G----GPEVDVHAVVLDLP  114 (636)
Q Consensus        64 ---------~~~~~~~~~~~L~~G~~VIID~tn~~~---------------~~R~~l~~l-~----~~g~~v~vV~Ld~p  114 (636)
                               ..+....+.-.|..|.+||++.+++..               ..+.-+-.+ +    +.-.+..+|||++|
T Consensus       148 ~Q~r~y~~R~~QY~dAL~HiL~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~P  227 (393)
T KOG3877|consen  148 MQDRIYNCRFDQYLDALAHILNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDTP  227 (393)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcCC
Confidence                     123335566677889999999977654               122222222 1    11223468999999


Q ss_pred             HHHHHHHHHhccc
Q 006654          115 AKLCISRSVKRIE  127 (636)
Q Consensus       115 ~e~l~~R~~~R~~  127 (636)
                      ...+.+|+.+|+.
T Consensus       228 v~~v~~~Ik~rg~  240 (393)
T KOG3877|consen  228 VNKVLENIKRRGN  240 (393)
T ss_pred             cHHHHHHHHhcCC
Confidence            9999999999986

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=97.49  E-value=0.0005  Score=70.28  Aligned_cols=110  Identities=20%  Similarity=0.221  Sum_probs=75.7

Q ss_pred             ccccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC--------------------C-------------
Q 006654           14 EEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG--------------------K-------------   60 (636)
Q Consensus        14 ~~~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~--------------------~-------------   60 (636)
                      +.+...|.+|++-|+||.||||+|..++.++|.. ..|++|.+|+-                    |             
T Consensus        83 ir~~~~p~IILIGGasGVGkStIA~ElA~rLgI~-~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~pii  161 (299)
T COG2074          83 IRKMKRPLIILIGGASGVGKSTIAGELARRLGIR-SVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPII  161 (299)
T ss_pred             HhccCCCeEEEecCCCCCChhHHHHHHHHHcCCc-eeecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchh
Confidence            3566679999999999999999999999999954 45888888621                    0             


Q ss_pred             CCcHHH-------HHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHhCCCCCeE-EEEEEeCCHHHHHHHHHhcccc
Q 006654           61 SGTKVQ-------CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDV-HAVVLDLPAKLCISRSVKRIEH  128 (636)
Q Consensus        61 ~~~~~~-------~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v-~vV~Ld~p~e~l~~R~~~R~~~  128 (636)
                      .|..++       +-..+.+++.+|.++||.+.++-+..-..-   .. +..+ .++..-.+.++...|.-.|.+.
T Consensus       162 aGF~dqa~~V~~GI~~VI~RAi~eG~~lIIEGvHlVPg~i~~~---~~-~~n~~~~~l~i~dee~Hr~RF~~R~~~  233 (299)
T COG2074         162 AGFEDQASAVMVGIEAVIERAIEEGEDLIIEGVHLVPGLIKEE---AL-GNNVFMFMLYIADEELHRERFYDRIRY  233 (299)
T ss_pred             hhHHHHhHHHHHHHHHHHHHHHhcCcceEEEeeeeccccccHh---hh-ccceEEEEEEeCCHHHHHHHHHHHHHH
Confidence            000111       125667899999999999988777433221   11 1222 3333345677888899999763

>PRK13976 thymidylate kinase; Provisional

Probab=97.48  E-value=0.00098  Score=67.14  Aligned_cols=104  Identities=20%  Similarity=0.213  Sum_probs=61.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCC--C--eEEeeh--------hhhcC---C--CCCcH-----------HHHHHHHHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSAR--P--WARICQ--------DTINK---G--KSGTK-----------VQCLTSASS   73 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~--~--~~~Is~--------D~ir~---~--~~~~~-----------~~~~~~~~~   73 (636)
                      +|++-|+-||||||+++.|++.+..  +  -+++..        ..++.   +  .....           +.+...+..
T Consensus         2 fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~~~~~I~p   81 (209)
T PRK13976          2 FITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREHFVKVILP   81 (209)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999877642  1  111111        11221   0  11110           111244667


Q ss_pred             HHhCCCeEEEeCCCCCHHHHH--------HHH-Hh-C--CCCCeEEEEEEeCCHHHHHHHHHhc
Q 006654           74 ALKKGKSVFLDRCNLEREQRT--------DFV-KL-G--GPEVDVHAVVLDLPAKLCISRSVKR  125 (636)
Q Consensus        74 ~L~~G~~VIID~tn~~~~~R~--------~l~-~l-~--~~g~~v~vV~Ld~p~e~l~~R~~~R  125 (636)
                      +|.+|..||.|....+.-..+        .|. .+ .  ....+=.+|+|++|.+++.+|+..|
T Consensus        82 ~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~  145 (209)
T PRK13976         82 ALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKN  145 (209)
T ss_pred             HHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhccc
Confidence            888999999999655432211        122 22 1  1112336889999999999998644

>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]

Probab=97.48  E-value=0.00098  Score=63.72  Aligned_cols=113  Identities=19%  Similarity=0.205  Sum_probs=77.2

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC-------------CCC---------------c-HHH
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG-------------KSG---------------T-KVQ   66 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~-------------~~~---------------~-~~~   66 (636)
                      ...+.++|+|-|.|-||||++|.++...+..+|.||.-|.+.+.             +.+               . .+.
T Consensus        19 g~~~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e~   98 (205)
T COG3896          19 GMPEGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILEL   98 (205)
T ss_pred             CCCCceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeechhHHHH
Confidence            44566899999999999999999999888778999987776311             000               0 011


Q ss_pred             H---HH-HHHHHHhCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccccc
Q 006654           67 C---LT-SASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHE  129 (636)
Q Consensus        67 ~---~~-~~~~~L~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~  129 (636)
                      .   .. .+...+.+|.++|.|+.--++..--.-.+ .-.++.+..|-+.+|+|+..+|-..|..+.
T Consensus        99 ~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r-~l~g~~v~~VGV~~p~E~~~~Re~rr~dR~  164 (205)
T COG3896          99 AMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLR-VLEGCRVWMVGVHVPDEEGARRELRRGDRH  164 (205)
T ss_pred             HHHHHHHHHHHHhccCcceeehhcccchhhHHHHHH-HHhCCceEEEEeeccHHHHHHHHhhcCCcC
Confidence            1   12 23334467889999995544333222222 346778888889999999999988887643

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=97.47  E-value=0.0006  Score=70.94  Aligned_cols=37  Identities=19%  Similarity=0.251  Sum_probs=30.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhcC
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINK   58 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir~   58 (636)
                      +|.++|.+||||||+++++.+.++   .....|+.|.+..
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr   40 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR   40 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence            478899999999999999987764   3467889888753

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PHA00729 NTP-binding motif containing protein

Probab=97.45  E-value=0.00088  Score=68.13  Aligned_cols=105  Identities=11%  Similarity=0.038  Sum_probs=59.9

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh--cCC---CCCcHHHHHHHHHHHHhCC---CeEEEeCCCCCH-
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI--NKG---KSGTKVQCLTSASSALKKG---KSVFLDRCNLER-   90 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i--r~~---~~~~~~~~~~~~~~~L~~G---~~VIID~tn~~~-   90 (636)
                      ...|++.|+||+||||+|.+++...+.....+..+..  ..+   ...+...+...+..++...   .-+|||+.-.-. 
T Consensus        17 f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~   96 (226)
T PHA00729         17 FVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLS   96 (226)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhc
Confidence            3578999999999999999999886522222322211  111   1123344445555444432   236999922111 


Q ss_pred             ---HHHH------HHHHh-C-CCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           91 ---EQRT------DFVKL-G-GPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        91 ---~~R~------~l~~l-~-~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                         +.+.      .+..+ . ...   .+++..+..+.|.+|+.+|+-
T Consensus        97 ~~~wh~~~~~~yf~L~~aLrSR~~---l~il~~ls~edL~~~Lr~Rg~  141 (226)
T PHA00729         97 KYVWYEDYMKTFYKIYALIRTRVS---AVIFTTPSPEDLAFYLREKGW  141 (226)
T ss_pred             ccchhhhccchHHHHHHHHHhhCc---EEEEecCCHHHHHHHHHhCCC
Confidence               1211      12222 2 222   366778889999999999875

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.35  E-value=0.00084  Score=75.78  Aligned_cols=67  Identities=24%  Similarity=0.357  Sum_probs=49.9

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHH-HHHHHHhC-CCeEEEeC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLT-SASSALKK-GKSVFLDR   85 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~-~~~~~L~~-G~~VIID~   85 (636)
                      +|+=|+|-||||||||.||++++.+++.++.-|+.-.+-.+..|..++-++ ....+... ...++||.
T Consensus       222 PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFiDe  290 (802)
T KOG0733|consen  222 PPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDE  290 (802)
T ss_pred             CCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEeec
Confidence            466789999999999999999999999999889888887777776555443 33333333 23466666

>PRK09087 hypothetical protein; Validated

Probab=97.34  E-value=0.0014  Score=66.84  Aligned_cols=120  Identities=16%  Similarity=0.166  Sum_probs=66.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc--------------CC---CCCcHHHHHHHHHHHHhCCCeEEEe
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN--------------KG---KSGTKVQCLTSASSALKKGKSVFLD   84 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir--------------~~---~~~~~~~~~~~~~~~L~~G~~VIID   84 (636)
                      .++|+|++|||||++++.+++..+  ...++.+.+.              ++   ...+...++..+-....+|+.+|+-
T Consensus        46 ~l~l~G~~GsGKThLl~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilit  123 (226)
T PRK09087         46 VVVLAGPVGSGKTHLASIWREKSD--ALLIHPNEIGSDAANAAAEGPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMT  123 (226)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhcC--CEEecHHHcchHHHHhhhcCeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEE
Confidence            479999999999999999988766  3334432111              00   1123444556666666778888877


Q ss_pred             CCCCCHHHHHHHHHh-C--CCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhh
Q 006654           85 RCNLEREQRTDFVKL-G--GPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK  148 (636)
Q Consensus        85 ~tn~~~~~R~~l~~l-~--~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~f  148 (636)
                      ++..........-++ .  ..+.   ++.+..|.+..+..+.+|.-...  .-.++++++.-+.+++
T Consensus       124 s~~~p~~~~~~~~dL~SRl~~gl---~~~l~~pd~e~~~~iL~~~~~~~--~~~l~~ev~~~La~~~  185 (226)
T PRK09087        124 SRLWPSSWNVKLPDLKSRLKAAT---VVEIGEPDDALLSQVIFKLFADR--QLYVDPHVVYYLVSRM  185 (226)
T ss_pred             CCCChHHhccccccHHHHHhCCc---eeecCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHh
Confidence            643222222212222 1  2232   55666666544433333322111  1257778777777765

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=97.32  E-value=0.0051  Score=61.83  Aligned_cols=32  Identities=25%  Similarity=0.413  Sum_probs=28.4

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehh
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQD   54 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D   54 (636)
                      .+|.+=||.||||||+|+.++++++  |.++++.
T Consensus         5 ~~IAIDGPagsGKsTvak~lA~~Lg--~~yldTG   36 (222)
T COG0283           5 IIIAIDGPAGSGKSTVAKILAEKLG--FHYLDTG   36 (222)
T ss_pred             eEEEEeCCCccChHHHHHHHHHHhC--CCeeccc
Confidence            6788999999999999999999999  6668753

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=97.30  E-value=0.00076  Score=72.97  Aligned_cols=52  Identities=17%  Similarity=0.245  Sum_probs=46.2

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHH
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCL   68 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~   68 (636)
                      -..|..+.|.||||+|||.+|+.++++++..+..++...+...+.|..+..+
T Consensus       145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~I  196 (413)
T PLN00020        145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLI  196 (413)
T ss_pred             CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHH
Confidence            3568899999999999999999999999988899999999999999876544

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=97.26  E-value=0.0057  Score=64.12  Aligned_cols=115  Identities=20%  Similarity=0.223  Sum_probs=68.8

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhC------CCeEEEeCCCCCH--HH
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKK------GKSVFLDRCNLER--EQ   92 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~------G~~VIID~tn~~~--~~   92 (636)
                      .+|++.|++||||||-.+.|-. +|  |..||  .+      +. .++....+.+..      .-.+++|.-+..-  .-
T Consensus         2 ~~vIiTGlSGaGKs~Al~~lED-~G--y~cvD--Nl------P~-~Ll~~l~~~~~~~~~~~~~~Ai~iD~R~~~~~~~~   69 (284)
T PF03668_consen    2 ELVIITGLSGAGKSTALRALED-LG--YYCVD--NL------PP-SLLPQLIELLAQSNSKIEKVAIVIDIRSREFFEDL   69 (284)
T ss_pred             eEEEEeCCCcCCHHHHHHHHHh-cC--eeEEc--CC------cH-HHHHHHHHHHHhcCCCCceEEEEEeCCChHHHHHH
Confidence            5799999999999998887754 45  54443  22      11 122222233331      1147888854332  22


Q ss_pred             HHHHHHhCCCCCeEEEEEEeCCHHHHHHHHH-hcccccCCCCCCChHHHHHHHHhhh
Q 006654           93 RTDFVKLGGPEVDVHAVVLDLPAKLCISRSV-KRIEHEGNLQGGKAAAVVNRMLQKK  148 (636)
Q Consensus        93 R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~-~R~~~~~~~~~~vp~evi~rm~~~f  148 (636)
                      ...+..+++.+..+.++||+++++++++|-. .|..||....+... +.+.+-.+.+
T Consensus        70 ~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~l-e~I~~Er~~L  125 (284)
T PF03668_consen   70 FEALDELRKKGIDVRILFLDASDEVLIRRYSETRRRHPLSSDGSLL-EAIEKERELL  125 (284)
T ss_pred             HHHHHHHHhcCCceEEEEEECChHHHHHHHHhccCCCCCCCCCCcH-HHHHHHHHHH
Confidence            2233333555888999999999999999876 56677765333333 4454444444

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>PF14519 Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJR_A

Probab=97.25  E-value=0.0012  Score=68.57  Aligned_cols=162  Identities=18%  Similarity=0.183  Sum_probs=83.5

Q ss_pred             eEEEEeccCcc-hhhhhhhhHHhhhhhc-CCeEEEEEEcccceecc-------cCcccccEEEeCCCCCCcCCCChhhHH
Q 006654          314 ARLVLVDLTQG-SKILSLVRAKAAQKHI-NPKKFFTFVGDITRLYT-------GGGLCCNVIANAANWRLKPGGGGVNAA  384 (636)
Q Consensus       314 ~~~v~~~~~~~-s~~Ls~vs~~~~~~~~-~~~~v~v~~GDIt~~~~-------~~~~~~daIVNaaN~~L~~~ggGVa~A  384 (636)
                      .++++.|.+.- .+.+   +..-...-+ ++..+.+..|++..+..       .....+++||.|||+-.. +|||.+.|
T Consensus        14 mkiil~D~N~~v~k~W---~~~l~~~~~~~~~~~~ih~~~~e~l~~~~~~~~~~~~~~~~aIVSPaNSfGy-MgGGFDLa   89 (280)
T PF14519_consen   14 MKIILCDTNPIVCKCW---KKHLPKALISSSNYVCIHNGKFESLNHTLRKSNKNHSTKKDAIVSPANSFGY-MGGGFDLA   89 (280)
T ss_dssp             -EEEEEES-HHHHHHH---HHH-----------EEEEES-HHHHHHHTTSS--------EEEEEEEETT-----SHHHHH
T ss_pred             ceEEEEcCCHHHHHHH---HHHccHhhhccCceeeeecCcHHHHHHHHhhccccCCCCcceEECCchhccc-CCCchhHH
Confidence            68888877642 1222   111111111 23348888998877641       123458999999999999 89999999


Q ss_pred             HHHhhc-HHHHHHHHHhc--CCCCCCcEEEecCCC---CCCCCCCCCccEEEEecC---CC---CCCCCCCCCCCCccch
Q 006654          385 IFSAAG-PALEVATAERA--KSLYPGNSVIVPLPS---TSPLCGREGVTHVIHVLG---PN---MNPRRPNCLDGDYVKG  452 (636)
Q Consensus       385 I~~aaG-~~l~~e~~~~~--~~~~~G~avvT~l~~---~~~~~~~l~~k~VIH~Vg---P~---~~~~~~~~~~~~~~~~  452 (636)
                      |.+.-| ..++..+++..  ...++|.+-+..++-   .+-.++.-+++||||+=.   |.   |....      .+...
T Consensus        90 i~~~fggk~~E~~~r~~l~~~y~pvGs~tvIdL~~~~~~~~~~~~~~i~yIi~~PTMv~P~~~~~d~~~------~~~t~  163 (280)
T PF14519_consen   90 ISEYFGGKPFENWFRAQLGERYHPVGSCTVIDLPKCFEPSSIYNNWGIRYIIHVPTMVVPEKPVWDREV------PYETG  163 (280)
T ss_dssp             HHHHHTSHHHHHHHHHHTTTS---TT--EEEEGGGGG--------TTEEEEEEEEEES-TTS-S--TT-------TTTTT
T ss_pred             HHHHhCCchhHHHHHHHHhccccCCCeeEEEECchhhhhhhcccccCceEEEECCccccCCCcccchhH------HHHHH
Confidence            999976 45666566542  337899988877432   111235578999999832   22   22221      23345


Q ss_pred             HHHHHHHHHHHHHhH----HHhhccccCCCCCCCcCc
Q 006654          453 CEILRKAYTSLFEGF----LSIVRSQEKLSKGCNEDI  485 (636)
Q Consensus       453 ~~~L~~ay~~~L~~a----~siaf~~~~~~~~~~~~~  485 (636)
                      .+.+.++.++.|..+    .+|..|-+|+|-+.-+.-
T Consensus       164 ~~~vfn~~WN~l~~~p~~IdtLiiPGLgTGyGgV~p~  200 (280)
T PF14519_consen  164 WSLVFNAMWNALRHAPEDIDTLIIPGLGTGYGGVPPE  200 (280)
T ss_dssp             HHHHHHHHHHHHHTS-TT-SEEEE--SSSSTT---HH
T ss_pred             HHHHHHHHHHhhccCCCCCCeEEECCcccccCCCCHH
Confidence            677888899988753    589999999887665443

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=97.24  E-value=0.00067  Score=68.80  Aligned_cols=71  Identities=20%  Similarity=0.335  Sum_probs=42.3

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDF   96 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn~~~~~R~~l   96 (636)
                      ..-++|.||||.||||+|+.++.+++..+..++...+..    . .. +..+...++.+.-++||-.+.-....+++
T Consensus        50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k----~-~d-l~~il~~l~~~~ILFIDEIHRlnk~~qe~  120 (233)
T PF05496_consen   50 LDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK----A-GD-LAAILTNLKEGDILFIDEIHRLNKAQQEI  120 (233)
T ss_dssp             --EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S----C-HH-HHHHHHT--TT-EEEECTCCC--HHHHHH
T ss_pred             cceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh----H-HH-HHHHHHhcCCCcEEEEechhhccHHHHHH
Confidence            345789999999999999999999997776666533321    1 11 13334456777788899987555444433

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.22  E-value=0.00089  Score=59.75  Aligned_cols=36  Identities=31%  Similarity=0.533  Sum_probs=28.4

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCC---eEEeehhh
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARP---WARICQDT   55 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~---~~~Is~D~   55 (636)
                      +..++++|+|||||||+++.++..+...   +..++.+.
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~   40 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGED   40 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEE
Confidence            3568999999999999999999988743   55555443

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.21  E-value=0.0012  Score=65.73  Aligned_cols=39  Identities=26%  Similarity=0.332  Sum_probs=31.3

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcC
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINK   58 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~   58 (636)
                      |.+|+|+||+|+||||.+.+|+..+   +.....++.|.+|.
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~   42 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRI   42 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSST
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCc
Confidence            7899999999999999998888654   45577888888874

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=97.15  E-value=0.00047  Score=67.23  Aligned_cols=32  Identities=31%  Similarity=0.454  Sum_probs=27.3

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQ   53 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~   53 (636)
                      ++++.|+|||||||||..++..++.++.++.+
T Consensus         3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat   34 (170)
T PRK05800          3 LILVTGGARSGKSRFAERLAAQSGLQVLYIAT   34 (170)
T ss_pred             EEEEECCCCccHHHHHHHHHHHcCCCcEeCcC
Confidence            58999999999999999999987755556665

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=97.14  E-value=0.0018  Score=67.29  Aligned_cols=111  Identities=19%  Similarity=0.240  Sum_probs=67.1

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcCC----C-eEEeehhhh--------------cCCCCCcHH-HHHHHHHHHH
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSAR----P-WARICQDTI--------------NKGKSGTKV-QCLTSASSAL   75 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~----~-~~~Is~D~i--------------r~~~~~~~~-~~~~~~~~~L   75 (636)
                      ..+.|.+|.++|+||+||||+|+.|...+.+    + ...+-+|-+              |.|...+.+ ..+-.....+
T Consensus        78 ~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~~v  157 (283)
T COG1072          78 NQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLSDV  157 (283)
T ss_pred             CCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCccccHHHHHHHHHHH
Confidence            3567899999999999999999998866541    1 222333332              122222222 1122222333


Q ss_pred             hCC---------------------------CeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           76 KKG---------------------------KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        76 ~~G---------------------------~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      ++|                           +-+|+.|.|+-.... .|..+ .-.+.   .||+|++.+.+.+|...|..
T Consensus       158 K~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~-p~~~~sdffDf---SIyvDa~~~~le~wyi~Rfl  233 (283)
T COG1072         158 KAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGE-PWLFLSDFFDF---SIYVDADEELLEERYIERFL  233 (283)
T ss_pred             hcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCC-ccccccccceE---EEEecCCHHHHHHHHHHHHH
Confidence            322                           247778865544333 44444 33333   78999999999999999987


Q ss_pred             ccC
Q 006654          128 HEG  130 (636)
Q Consensus       128 ~~~  130 (636)
                      ..+
T Consensus       234 ~~g  236 (283)
T COG1072         234 KFG  236 (283)
T ss_pred             hcc
Confidence            543

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.13  E-value=0.0023  Score=57.86  Aligned_cols=81  Identities=16%  Similarity=0.296  Sum_probs=45.2

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCCCCcHHH-----HHHHHHHHHhCCCeEEEeCCCCC-
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTKVQ-----CLTSASSALKKGKSVFLDRCNLE-   89 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~~~~~~~-----~~~~~~~~L~~G~~VIID~tn~~-   89 (636)
                      ....+++.|+||+||||+++.++..+   +..+..++..............     ..............+|+|..+.. 
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~   97 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS   97 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence            34578899999999999999999886   4445555544333221111100     01111222234456899997643 


Q ss_pred             HHHHHHHHHh
Q 006654           90 REQRTDFVKL   99 (636)
Q Consensus        90 ~~~R~~l~~l   99 (636)
                      ......+..+
T Consensus        98 ~~~~~~~~~~  107 (151)
T cd00009          98 RGAQNALLRV  107 (151)
T ss_pred             HHHHHHHHHH
Confidence            2334444444

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.12  E-value=0.0041  Score=67.20  Aligned_cols=64  Identities=20%  Similarity=0.360  Sum_probs=48.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHH--hCCCeEEEeC
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSAL--KKGKSVFLDR   85 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L--~~G~~VIID~   85 (636)
                      =|+|+||||+|||-||++++.+.+-.|..|+.-.+-..|.|..+.+++.+-+..  .+...++||-
T Consensus       247 gvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDE  312 (491)
T KOG0738|consen  247 GVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDE  312 (491)
T ss_pred             eeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhh
Confidence            578999999999999999999998777788888888888888776554443222  3344456654

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.09  E-value=0.0043  Score=71.53  Aligned_cols=38  Identities=21%  Similarity=0.431  Sum_probs=32.1

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ   53 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~   53 (636)
                      ..++.++++|+||||-||||+|+.+|+..|..++.||.
T Consensus       322 ~RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINA  359 (877)
T KOG1969|consen  322 KRPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINA  359 (877)
T ss_pred             CCCccceEEeecCCCCChhHHHHHHHHhcCceEEEecc
Confidence            45567899999999999999999999999955566664

>PRK08084 DNA replication initiation factor; Provisional

Probab=97.09  E-value=0.0028  Score=64.77  Aligned_cols=24  Identities=13%  Similarity=0.184  Sum_probs=20.9

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHc
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      ..++|.||||+|||++++.++...
T Consensus        46 ~~l~l~Gp~G~GKThLl~a~~~~~   69 (235)
T PRK08084         46 GYIYLWSREGAGRSHLLHAACAEL   69 (235)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            468999999999999999988654

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=97.08  E-value=0.0041  Score=68.99  Aligned_cols=40  Identities=33%  Similarity=0.480  Sum_probs=33.4

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhc
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir   57 (636)
                      .+|.+|+|+|++||||||.+.+|+..+   +.....++.|.+|
T Consensus        98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R  140 (429)
T TIGR01425        98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR  140 (429)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence            458999999999999999999998655   4556778888876

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.08  E-value=0.0025  Score=67.44  Aligned_cols=26  Identities=27%  Similarity=0.769  Sum_probs=23.7

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      -++|+|-||||.|||++|++|++++-
T Consensus       177 NRliLlhGPPGTGKTSLCKaLaQkLS  202 (423)
T KOG0744|consen  177 NRLILLHGPPGTGKTSLCKALAQKLS  202 (423)
T ss_pred             eeEEEEeCCCCCChhHHHHHHHHhhe
Confidence            36899999999999999999999874

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=97.04  E-value=0.0051  Score=61.88  Aligned_cols=129  Identities=16%  Similarity=0.232  Sum_probs=70.2

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc--C------C------CCC----------------cHHHHHHH
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN--K------G------KSG----------------TKVQCLTS   70 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir--~------~------~~~----------------~~~~~~~~   70 (636)
                      .+++++||+|+|||.+|-.++++++  +..|+.|.+.  .      +      ..+                +..+..+.
T Consensus         2 ~v~~i~GpT~tGKt~~ai~lA~~~g--~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~i~a~ea~~~   79 (233)
T PF01745_consen    2 KVYLIVGPTGTGKTALAIALAQKTG--APVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGIINAEEAHER   79 (233)
T ss_dssp             EEEEEE-STTSSHHHHHHHHHHHH----EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S--HHHHHHH
T ss_pred             cEEEEECCCCCChhHHHHHHHHHhC--CCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCCcCHHHHHHH
Confidence            4789999999999999999999999  5556655542  0      0      000                11222222


Q ss_pred             HHH---HHhCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHH-HHHHHHHhcccccCCCCCCChHHHHHHHH
Q 006654           71 ASS---ALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAK-LCISRSVKRIEHEGNLQGGKAAAVVNRML  145 (636)
Q Consensus        71 ~~~---~L~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e-~l~~R~~~R~~~~~~~~~~vp~evi~rm~  145 (636)
                      +..   .+..++.+|+.+-..+.-.+- +.+. -..++.+++.++.+|++ .-..|..+|...... |+.-....+....
T Consensus        80 Li~~v~~~~~~~~~IlEGGSISLl~~m-~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ML~-p~~~~~Sll~EL~  157 (233)
T PF01745_consen   80 LISEVNSYSAHGGLILEGGSISLLNCM-AQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQMLR-PDSSGPSLLEELV  157 (233)
T ss_dssp             HHHHHHTTTTSSEEEEEE--HHHHHHH-HH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHHHHS---SSS--HHHHHH
T ss_pred             HHHHHHhccccCceEEeCchHHHHHHH-HhcccccCCCeEEEEEEECCChHHHHHHHHHHHHHhcC-CCCCCCcHHHHHH
Confidence            222   224477899999544432222 2333 45778899999988775 456788777654322 2334456777777


Q ss_pred             hhhcCCCc
Q 006654          146 QKKELPKL  153 (636)
Q Consensus       146 ~~fe~P~~  153 (636)
                      ..+..|..
T Consensus       158 ~lW~~p~~  165 (233)
T PF01745_consen  158 ALWNDPAL  165 (233)
T ss_dssp             HHHTSTTH
T ss_pred             HHHhCccc
Confidence            77777664

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=97.03  E-value=0.0087  Score=70.30  Aligned_cols=36  Identities=17%  Similarity=0.269  Sum_probs=31.0

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir   57 (636)
                      ..+|.+.||+||||||+|+.|+++++  +.+++.+.++
T Consensus       442 ~~~i~i~g~~~~gks~~~~~l~~~~~--~~~~~~~~~~  477 (661)
T PRK11860        442 VPVICIDGPTASGKGTVAARVAEALG--YHYLDSGALY  477 (661)
T ss_pred             cceEEeeCCCCCCHHHHHHHHHHHhC--CeEecHHHhh
Confidence            34788899999999999999999999  6678877664

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=97.00  E-value=0.0064  Score=64.17  Aligned_cols=33  Identities=18%  Similarity=0.368  Sum_probs=27.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i   56 (636)
                      +|+++||+|||||++|..|++.++  ..+|+.|.+
T Consensus         1 vi~i~G~t~~GKs~la~~l~~~~~--~~iis~Ds~   33 (287)
T TIGR00174         1 VIFIMGPTAVGKSQLAIQLAKKLN--AEIISVDSM   33 (287)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhCC--CcEEEechh
Confidence            479999999999999999999987  445666554

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>CHL00195 ycf46 Ycf46; Provisional

Probab=97.00  E-value=0.0017  Score=73.45  Aligned_cols=51  Identities=20%  Similarity=0.236  Sum_probs=41.6

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHH
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCL   68 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~   68 (636)
                      ..|.=|+|.||||+|||.+|+.++.+.+.++..++...+..++.+..+..+
T Consensus       257 ~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l  307 (489)
T CHL00195        257 PTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRM  307 (489)
T ss_pred             CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHH
Confidence            356678999999999999999999999988888888777777766654433

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=96.99  E-value=0.0045  Score=56.26  Aligned_cols=95  Identities=21%  Similarity=0.266  Sum_probs=52.2

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc--------CCCeEEeehhhh--------------cCC-CC-CcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS--------ARPWARICQDTI--------------NKG-KS-GTKVQCLTSASSA   74 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~--------~~~~~~Is~D~i--------------r~~-~~-~~~~~~~~~~~~~   74 (636)
                      ...++++.|+||+|||++++.+++.+        ...+..++....              ... .. .+...+...+.+.
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~   82 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA   82 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence            45679999999999999999999876        333444442111              111 11 2445566777777


Q ss_pred             HhCCC--eEEEeCCCC--CHHHHHHHHHhCCCCCeEEEEEEeCC
Q 006654           75 LKKGK--SVFLDRCNL--EREQRTDFVKLGGPEVDVHAVVLDLP  114 (636)
Q Consensus        75 L~~G~--~VIID~tn~--~~~~R~~l~~l~~~g~~v~vV~Ld~p  114 (636)
                      +....  -+|||....  ....-..+..+.+ ...+.+|++-.|
T Consensus        83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~-~~~~~vvl~G~~  125 (131)
T PF13401_consen   83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN-ESNIKVVLVGTP  125 (131)
T ss_dssp             HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC-SCBEEEEEEESS
T ss_pred             HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh-CCCCeEEEEECh
Confidence            76665  488898543  2233333333422 445555555544

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=96.97  E-value=0.0089  Score=57.91  Aligned_cols=33  Identities=21%  Similarity=0.391  Sum_probs=26.1

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ   53 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~   53 (636)
                      +.+++++|.||+||||+.+...+.+ ..+..+|.
T Consensus         4 ~kvvvitGVpGvGKTTVl~~~~~~l-~~~~ivNy   36 (189)
T COG2019           4 RKVVVITGVPGVGKTTVLKIALKEL-VKHKIVNY   36 (189)
T ss_pred             ceEEEEEcCCCCChHHHHHHHHHHH-hhceeeeH
Confidence            5789999999999999999988877 12444554

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=96.97  E-value=0.0072  Score=62.63  Aligned_cols=66  Identities=18%  Similarity=0.246  Sum_probs=38.0

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcC-------CCeEEeehhhhcCCCCCcHHHH-HHHHHHHHhCCCeEEEeCCC
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSA-------RPWARICQDTINKGKSGTKVQC-LTSASSALKKGKSVFLDRCN   87 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~-------~~~~~Is~D~ir~~~~~~~~~~-~~~~~~~L~~G~~VIID~tn   87 (636)
                      ..-++|.|+||+||||+|+.+++.+.       ..+..++...+...+.+..... ...+..  ..|..++||...
T Consensus        42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~--a~~~VL~IDE~~  115 (261)
T TIGR02881        42 VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKK--ALGGVLFIDEAY  115 (261)
T ss_pred             cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHh--ccCCEEEEechh
Confidence            44578999999999999999987642       1233344433433333332221 122221  135567888754

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=96.97  E-value=0.0053  Score=68.49  Aligned_cols=41  Identities=27%  Similarity=0.340  Sum_probs=32.9

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcC
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINK   58 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~   58 (636)
                      .+|.+|+|+|++|+||||.+.+|+..+   +.....++.|.++.
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~  136 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP  136 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence            468999999999999999999998655   34466678777653

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=96.94  E-value=0.0092  Score=57.57  Aligned_cols=36  Identities=22%  Similarity=0.363  Sum_probs=28.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhc
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir   57 (636)
                      ++++.|+|||||||++..++..+   +.....++.|.++
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~   40 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR   40 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence            68899999999999999988664   4446667777553

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>COG5324 Uncharacterized conserved protein [Function unknown]

Probab=96.93  E-value=0.0092  Score=65.72  Aligned_cols=154  Identities=18%  Similarity=0.301  Sum_probs=98.0

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCe-EEEeCCCCCHHHHHHHHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKS-VFLDRCNLEREQRTDFVK   98 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~-VIID~tn~~~~~R~~l~~   98 (636)
                      .+|++-+..-||||||.|+.|.+-++  |.++..|.+ .+.-++. .+.+.+.+..+.|.. |++|..|.....|..+..
T Consensus       374 ~tll~pia~igcgktt~ak~l~~lf~--w~~vqnd~l-sgk~~~k-~~~kai~~~~r~~~~~v~~drnnh~~~~r~~lq~  449 (758)
T COG5324         374 FTLLVPIATIGCGKTTVAKILEKLFG--WPVVQNDNL-SGKGGPK-RFAKAIIEEFRNGHSVVFADRNNHISNMRSTLQT  449 (758)
T ss_pred             eEEEEEEEEeccCcccHHHHHHHHcC--CcccccCCC-CCCCchh-HHHHHHHHHhccCceEEEEcccchhhhhhhhhhc
Confidence            45889999999999999999999998  999998888 4443333 334555666677765 677888877778866633


Q ss_pred             h---CCCCCeEEEEEEe-CCH--HHHHHHHHhcccccCCCCC--CC--hHHHHHHHHhhhcCCCc----cCCccEEEEeC
Q 006654           99 L---GGPEVDVHAVVLD-LPA--KLCISRSVKRIEHEGNLQG--GK--AAAVVNRMLQKKELPKL----SEGFSRITLCQ  164 (636)
Q Consensus        99 l---~~~g~~v~vV~Ld-~p~--e~l~~R~~~R~~~~~~~~~--~v--p~evi~rm~~~fe~P~~----~Egfd~Viii~  164 (636)
                      -   -.-|..+..+-++ .|.  +...+|+.+|+.+..+..-  ++  ...++..+++++.+-..    ...|++++.++
T Consensus       450 d~l~~~~~vr~v~~p~~~~~ev~e~~~~rvlqrg~~hqsik~~eg~~kv~~imn~f~k~ykp~~~~~~~d~~~d~~ield  529 (758)
T COG5324         450 DILALIDGVRFVALPFKHTPEVPEFVQNRVLQRGDRHQSIKVSEGVDKVKAIMNTFYKQYKPFDAGNKHDANYDDIIELD  529 (758)
T ss_pred             ceEEEecCcEEEecccccCcccHHHHHHHHHhccCCccceeeccchHHHHHHHHHHHHhcCCCCCCCCccccccceeecc
Confidence            2   2233333333232 222  6678899999986544211  11  12456667777766443    34577777665


Q ss_pred             C----hhHHHHHHHHhc
Q 006654          165 N----ENDVQAALDTYS  177 (636)
Q Consensus       165 ~----~~~vdaiv~~~~  177 (636)
                      .    .+.+..+++.++
T Consensus       530 ~~~~sl~nar~i~n~~~  546 (758)
T COG5324         530 PLIGSLENARRIVNYFK  546 (758)
T ss_pred             cccchhhhHHHHHHHHH
Confidence            3    334555555554

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=96.93  E-value=0.0017  Score=71.38  Aligned_cols=46  Identities=20%  Similarity=0.352  Sum_probs=36.0

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCc
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT   63 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~   63 (636)
                      ..|.-|+|.|+||+|||++|+.++...+.++..++...+...+.+.
T Consensus       163 ~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~  208 (389)
T PRK03992        163 EPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGE  208 (389)
T ss_pred             CCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccc
Confidence            3466789999999999999999999998777777765554444443

>PRK10867 signal recognition particle protein; Provisional

Probab=96.92  E-value=0.0087  Score=66.66  Aligned_cols=41  Identities=20%  Similarity=0.307  Sum_probs=32.7

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHc----CCCeEEeehhhhcC
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTINK   58 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~----~~~~~~Is~D~ir~   58 (636)
                      .+|.+|+++|++||||||++.+|+..+    +.....++.|.+|.
T Consensus        98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~  142 (433)
T PRK10867         98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP  142 (433)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence            468999999999999999888877543    55567788887763

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.89  E-value=0.0015  Score=68.29  Aligned_cols=69  Identities=19%  Similarity=0.348  Sum_probs=52.0

Q ss_pred             cCcc-EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCe--EEEeC
Q 006654           17 KWKQ-ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKS--VFLDR   85 (636)
Q Consensus        17 ~~~p-~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~--VIID~   85 (636)
                      ..+| +=|+|.||||.|||+||++++-+.+-.|..++..++-..|.|..+.+++.+-+..++.++  +.||-
T Consensus       162 kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDE  233 (439)
T KOG0739|consen  162 KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDE  233 (439)
T ss_pred             CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeeh
Confidence            3344 468999999999999999999888766667777777788999888877666666666554  44453

>PRK06620 hypothetical protein; Validated

Probab=96.88  E-value=0.0074  Score=60.98  Aligned_cols=25  Identities=20%  Similarity=0.287  Sum_probs=22.0

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ..++|.|+||||||++++.+++..+
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~   69 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSN   69 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccC
Confidence            4579999999999999999887765

>PF13173 AAA_14: AAA domain

Probab=96.85  E-value=0.0029  Score=58.30  Aligned_cols=78  Identities=18%  Similarity=0.211  Sum_probs=47.8

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcC--CCeEEeehhhhcCCCCCcHHHHHHHHHHHHh-CCCeEEEeCCCCCHHHHHHHH
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQDTINKGKSGTKVQCLTSASSALK-KGKSVFLDRCNLEREQRTDFV   97 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~--~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~-~G~~VIID~tn~~~~~R~~l~   97 (636)
                      .+++|.|+.|+||||+++++++.+.  ..+..++.|+.+........ +.+.+.+... ....++||-....+.....+.
T Consensus         3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~iDEiq~~~~~~~~lk   81 (128)
T PF13173_consen    3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD-LLEYFLELIKPGKKYIFIDEIQYLPDWEDALK   81 (128)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh-hHHHHHHhhccCCcEEEEehhhhhccHHHHHH
Confidence            4689999999999999999998765  44556666555432111111 2233333332 335689999776665444444


Q ss_pred             Hh
Q 006654           98 KL   99 (636)
Q Consensus        98 ~l   99 (636)
                      .+
T Consensus        82 ~l   83 (128)
T PF13173_consen   82 FL   83 (128)
T ss_pred             HH
Confidence            44

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=96.85  E-value=0.007  Score=71.70  Aligned_cols=33  Identities=21%  Similarity=0.382  Sum_probs=28.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i   56 (636)
                      +|.+.|+|||||||+|+.|++.++  |.++++..+
T Consensus         3 ~i~I~G~~GsGKST~ak~la~~l~--~~~~~~g~~   35 (712)
T PRK09518          3 IVAIDGPAGVGKSSVSRALAQYLG--YAYLDTGAM   35 (712)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC--CcEeecCcE
Confidence            688999999999999999999998  666776554

>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family

Probab=96.84  E-value=0.00046  Score=64.64  Aligned_cols=49  Identities=8%  Similarity=0.156  Sum_probs=43.4

Q ss_pred             cccCChhhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHH
Q 006654          257 KGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVE  305 (636)
Q Consensus       257 ~~~l~~~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~  305 (636)
                      .+.++.+..++++.+.++++.|||||.|++|++|||.+++++||.+...
T Consensus        90 ~~~l~~~l~~~~~~a~~~~~~sva~P~iG~G~~G~~w~~v~~ii~~~~~  138 (140)
T cd02901          90 YEAIEKSLRELRAHARDNGIKSVAMPRIGCGLGGLDWEEVEPLIEKALA  138 (140)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCEEeeCCCCCcCCCCCHHHHHHHHHHHhc
Confidence            4567778888888898899999999999999999999999999988764

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=96.84  E-value=0.0082  Score=63.60  Aligned_cols=108  Identities=13%  Similarity=0.124  Sum_probs=57.0

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHH---hCCCeEEEeCCCCC--H
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSAL---KKGKSVFLDRCNLE--R   90 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L---~~G~~VIID~tn~~--~   90 (636)
                      .+..|.++++.|+||+||||+++.+++..+..+..++... .  ................   ...+.+|||.....  .
T Consensus        39 ~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~--~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~  115 (316)
T PHA02544         39 KGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-C--RIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA  115 (316)
T ss_pred             cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-c--cHHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH
Confidence            3445778888999999999999999998775555555433 1  1000001111111111   23456899986433  3


Q ss_pred             HHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 006654           91 EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI  126 (636)
Q Consensus        91 ~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~  126 (636)
                      .....+..+ ........+|...-....+...+..|.
T Consensus       116 ~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~  152 (316)
T PHA02544        116 DAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC  152 (316)
T ss_pred             HHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence            344445554 433222333333223334445555554

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=96.83  E-value=0.0034  Score=68.18  Aligned_cols=80  Identities=19%  Similarity=0.323  Sum_probs=50.0

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCe--EEEeCCC-CCHHHHHHHH
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKS--VFLDRCN-LEREQRTDFV   97 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~--VIID~tn-~~~~~R~~l~   97 (636)
                      .-.||.||||+||||+|+.|+...+..|..+|.-.-  +. ..-+.+++.++..+..|+.  ++||-.+ +++.|...++
T Consensus        49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~--gv-kdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lL  125 (436)
T COG2256          49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS--GV-KDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALL  125 (436)
T ss_pred             ceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc--cH-HHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhh
Confidence            346899999999999999999999877766663111  00 0122345666555655654  5678765 4555555554


Q ss_pred             HhCCCC
Q 006654           98 KLGGPE  103 (636)
Q Consensus        98 ~l~~~g  103 (636)
                      -.-+.|
T Consensus       126 p~vE~G  131 (436)
T COG2256         126 PHVENG  131 (436)
T ss_pred             hhhcCC
Confidence            443344

>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=96.82  E-value=0.0084  Score=63.60  Aligned_cols=108  Identities=22%  Similarity=0.297  Sum_probs=73.9

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc--CC------------CCC---------------cHHH---
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN--KG------------KSG---------------TKVQ---   66 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir--~~------------~~~---------------~~~~---   66 (636)
                      +-.+|+++|+.|||||.||-.||.+++  ...|+.|-+.  .+            ..+               +..+   
T Consensus         6 k~KVvvI~G~TGsGKSrLaVdLA~rf~--~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~   83 (348)
T KOG1384|consen    6 KDKVVVIMGATGAGKSRLAVDLATRFP--GEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFED   83 (348)
T ss_pred             CceEEEEecCCCCChhhhHHHHHHhCC--ceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHH
Confidence            567999999999999999999999987  6678876652  11            000               1111   


Q ss_pred             -HHHHHHHHHhCCC-eEEEeCCCCCHHHHHHH-H--H----------h-CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654           67 -CLTSASSALKKGK-SVFLDRCNLEREQRTDF-V--K----------L-GGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (636)
Q Consensus        67 -~~~~~~~~L~~G~-~VIID~tn~~~~~R~~l-~--~----------l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~  128 (636)
                       ....+.+..++|+ ++|+-|+|+.-..-..- .  +          + .+..|..++++++++..++-+|+.+|-..
T Consensus        84 ~a~~aie~I~~rgk~PIv~GGs~~yi~al~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda~~~VL~~~l~~RVD~  161 (348)
T KOG1384|consen   84 DASRAIEEIHSRGKLPIVVGGSNSYLQALLSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDADQAVLFERLDKRVDD  161 (348)
T ss_pred             HHHHHHHHHHhCCCCCEEeCCchhhHHHHhhcCCCcccCcccccCCCCCcccccceEEEEEecchHHHHHHHHHHHHH
Confidence             2245556667777 58888888664322110 0  0          1 12236678999999999999999999763

>PRK14974 cell division protein FtsY; Provisional

Probab=96.79  E-value=0.009  Score=64.49  Aligned_cols=40  Identities=23%  Similarity=0.297  Sum_probs=30.5

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhc
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir   57 (636)
                      .+|.+|+++|+||+||||.+.+++..+   +.....++.|.+|
T Consensus       138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R  180 (336)
T PRK14974        138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFR  180 (336)
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCc
Confidence            458899999999999999888877543   3345567777665

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=96.78  E-value=0.0028  Score=69.97  Aligned_cols=39  Identities=21%  Similarity=0.403  Sum_probs=31.7

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i   56 (636)
                      ..|.-++|.||||+|||++|+.++...+.++..+..-.+
T Consensus       177 ~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l  215 (398)
T PTZ00454        177 DPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEF  215 (398)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHH
Confidence            356778999999999999999999998877766654333

>PLN02748 tRNA dimethylallyltransferase

Probab=96.77  E-value=0.003  Score=70.86  Aligned_cols=37  Identities=30%  Similarity=0.379  Sum_probs=31.8

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhh
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT   55 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~   55 (636)
                      ..++.+|+++||+||||||||..|++.++  ..+|+.|.
T Consensus        19 ~~~~~~i~i~GptgsGKs~la~~la~~~~--~eii~~Ds   55 (468)
T PLN02748         19 KGKAKVVVVMGPTGSGKSKLAVDLASHFP--VEIINADS   55 (468)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHhcC--eeEEcCch
Confidence            34567999999999999999999999987  66788774

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=96.76  E-value=0.0076  Score=63.20  Aligned_cols=41  Identities=22%  Similarity=0.304  Sum_probs=32.1

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhc
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir   57 (636)
                      ..++.+|+++|+||+||||.+.+|+..+   +.....++.|.+|
T Consensus        69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r  112 (272)
T TIGR00064        69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR  112 (272)
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence            3457899999999999999999988655   3445678888764

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=96.75  E-value=0.0024  Score=70.35  Aligned_cols=43  Identities=19%  Similarity=0.482  Sum_probs=36.8

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC-CCCC
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-GKSG   62 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~-~~~~   62 (636)
                      |.-|+|+||||+||||+|+.|++.++.++.+++...+.. +|.+
T Consensus        50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG   93 (443)
T PRK05201         50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG   93 (443)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCccc
Confidence            577899999999999999999999998888888766664 5655

>TIGR00959 ffh signal recognition particle protein

Probab=96.75  E-value=0.011  Score=65.66  Aligned_cols=41  Identities=24%  Similarity=0.350  Sum_probs=33.2

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHc----CCCeEEeehhhhcC
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTINK   58 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~----~~~~~~Is~D~ir~   58 (636)
                      .+|.+++++|+|||||||.+.+|+..+    +.....++.|.+|.
T Consensus        97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~  141 (428)
T TIGR00959        97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP  141 (428)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence            468999999999999999988887653    44567788887753

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PHA03132 thymidine kinase; Provisional

Probab=96.74  E-value=0.012  Score=67.44  Aligned_cols=26  Identities=23%  Similarity=0.399  Sum_probs=23.7

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ..+|++-|+-||||||+++.|++.++
T Consensus       257 ~~fIv~EGidGsGKTTlik~L~e~lg  282 (580)
T PHA03132        257 ACFLFLEGVMGVGKTTLLNHMRGILG  282 (580)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            57899999999999999999998874

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=96.74  E-value=0.0041  Score=66.62  Aligned_cols=40  Identities=23%  Similarity=0.323  Sum_probs=31.8

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhc
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir   57 (636)
                      .++.+++++||+||||||++..|+..+   +.....++.|.++
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r  154 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR  154 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence            467899999999999999999998655   3345667778765

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=96.73  E-value=0.0027  Score=69.11  Aligned_cols=38  Identities=21%  Similarity=0.467  Sum_probs=30.7

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i   56 (636)
                      .|.-++|.|+||+|||++|+.++..++.++..+....+
T Consensus       155 ~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l  192 (364)
T TIGR01242       155 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL  192 (364)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHH
Confidence            35568999999999999999999998877666654433

Many proteins may score above the trusted cutoff because an internal

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=96.72  E-value=0.0032  Score=70.17  Aligned_cols=44  Identities=23%  Similarity=0.418  Sum_probs=33.4

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG   62 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~   62 (636)
                      .|.-++|.|+||+|||++|+.++..++.++..+....+...+.+
T Consensus       216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~G  259 (438)
T PTZ00361        216 PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLG  259 (438)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcc
Confidence            56678899999999999999999998866766665444333333

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=96.71  E-value=0.017  Score=55.83  Aligned_cols=26  Identities=23%  Similarity=0.501  Sum_probs=22.9

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      ++.-|++.|+||+||||++.+++..+
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L   29 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKL   29 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHH
Confidence            45678999999999999999998665

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=96.70  E-value=0.016  Score=63.81  Aligned_cols=42  Identities=26%  Similarity=0.363  Sum_probs=34.0

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcC
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINK   58 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~   58 (636)
                      ..+|.+|+|+|+-||||||.|-+|+..+   +.....++.|.+|.
T Consensus        97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~Rp  141 (451)
T COG0541          97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRP  141 (451)
T ss_pred             CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCCh
Confidence            4578999999999999999999887554   44566788888873

>CHL00181 cbbX CbbX; Provisional

Probab=96.69  E-value=0.02  Score=60.45  Aligned_cols=66  Identities=17%  Similarity=0.266  Sum_probs=39.5

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcC-------CCeEEeehhhhcCCCCCcHH-HHHHHHHHHHhCCCeEEEeCCC
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSA-------RPWARICQDTINKGKSGTKV-QCLTSASSALKKGKSVFLDRCN   87 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~-------~~~~~Is~D~ir~~~~~~~~-~~~~~~~~~L~~G~~VIID~tn   87 (636)
                      ..-++|.|+||+||||+|+.+++.+.       .++..++.+.+.....+... .....+.+  ..|.-++||...
T Consensus        59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~--a~ggVLfIDE~~  132 (287)
T CHL00181         59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKK--AMGGVLFIDEAY  132 (287)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHH--ccCCEEEEEccc
Confidence            34588999999999999999987642       13556666655433333211 11122221  235567888753

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.68  E-value=0.011  Score=67.80  Aligned_cols=39  Identities=15%  Similarity=0.305  Sum_probs=32.1

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i   56 (636)
                      ..|+=|+|-|||||||||+|++++.+.+.+|.-|..-++
T Consensus       466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL  504 (693)
T KOG0730|consen  466 SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPEL  504 (693)
T ss_pred             CCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHH
Confidence            467789999999999999999999998877766654333

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.66  E-value=0.0018  Score=60.03  Aligned_cols=30  Identities=40%  Similarity=0.719  Sum_probs=26.0

Q ss_pred             EEEEccCCCcHHHHHHHHHHHcCCCeEEee
Q 006654           23 VIMVGAPGSGKSTFCEHVMRSSARPWARIC   52 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~~~~~~~~Is   52 (636)
                      |+|+|+||+|||++++.+++.++.++..+.
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~~~~~~~i~   31 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALLGRPVIRIN   31 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHTCEEEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhhcceEEEE
Confidence            689999999999999999999986665554

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=96.64  E-value=0.0035  Score=69.14  Aligned_cols=44  Identities=18%  Similarity=0.450  Sum_probs=35.8

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc-CCCCC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-KGKSG   62 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir-~~~~~   62 (636)
                      .|.-|+|+||||+||||+|+.|++.++.++.+++.-.+. .++.+
T Consensus        46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG   90 (441)
T TIGR00390        46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG   90 (441)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCccc
Confidence            467899999999999999999999999888777754454 35555

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.62  E-value=0.0084  Score=64.75  Aligned_cols=101  Identities=23%  Similarity=0.316  Sum_probs=64.5

Q ss_pred             cccCccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhcCCCC---------------Cc------HHHHHHH
Q 006654           15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKS---------------GT------KVQCLTS   70 (636)
Q Consensus        15 ~~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir~~~~---------------~~------~~~~~~~   70 (636)
                      ...++|.+|+++|+.||||||.+-+++..+.   .....++.|.+|.+.+               ++      .....+-
T Consensus        96 ~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~eg  175 (483)
T KOG0780|consen   96 PKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEG  175 (483)
T ss_pred             cccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHH
Confidence            5567899999999999999999999986653   3457889999975421               11      1112244


Q ss_pred             HHHHHhCCCe-EEEeCCCCCHHHHHHHHHh----CCCCCeEEEEEEeCCH
Q 006654           71 ASSALKKGKS-VFLDRCNLEREQRTDFVKL----GGPEVDVHAVVLDLPA  115 (636)
Q Consensus        71 ~~~~L~~G~~-VIID~tn~~~~~R~~l~~l----~~~g~~v~vV~Ld~p~  115 (636)
                      +.++-+++.. ||+|+.-+.+.+...+.++    +.....-.++++|.+.
T Consensus       176 v~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasi  225 (483)
T KOG0780|consen  176 VDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASI  225 (483)
T ss_pred             HHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccc
Confidence            4555556654 5667665555444444333    4444445667777765

>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]

Probab=96.61  E-value=0.0034  Score=66.77  Aligned_cols=104  Identities=20%  Similarity=0.310  Sum_probs=72.2

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHH---cCCCeEEeehhhhcCCCC---C----cHHHHH---HHHHHHH-hCCCeEEEeCC
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQDTINKGKS---G----TKVQCL---TSASSAL-KKGKSVFLDRC   86 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~---~~~~~~~Is~D~ir~~~~---~----~~~~~~---~~~~~~L-~~G~~VIID~t   86 (636)
                      .-|++.|++|+||||++-+|.+.   .|.++.-++.|.||.+..   +    .+++.+   ..+.... .+|-..|-.-.
T Consensus        51 ctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~knlgfs~edreenirriaevaklfadaglvcitsfi  130 (627)
T KOG4238|consen   51 CTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNKNLGFSPEDREENIRRIAEVAKLFADAGLVCITSFI  130 (627)
T ss_pred             eeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhhccCCCchhHHHHHHHHHHHHHHHhcCCceeeehhc
Confidence            45789999999999998887654   456777889999986521   1    122222   2333333 34433343434


Q ss_pred             CCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHh
Q 006654           87 NLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVK  124 (636)
Q Consensus        87 n~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~  124 (636)
                      ....+.|....++ ...+.++.-|+++.|.++|.+|..+
T Consensus       131 spf~~dr~~arkihe~~~l~f~ev~v~a~l~vceqrd~k  169 (627)
T KOG4238|consen  131 SPFAKDRENARKIHESAGLPFFEVFVDAPLNVCEQRDVK  169 (627)
T ss_pred             ChhhhhhhhhhhhhcccCCceEEEEecCchhhhhhcChH
Confidence            4455788888888 8888888888999999999998654

>PLN02840 tRNA dimethylallyltransferase

Probab=96.61  E-value=0.0053  Score=67.83  Aligned_cols=38  Identities=24%  Similarity=0.410  Sum_probs=30.1

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhh
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT   55 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~   55 (636)
                      +..+..+|+++||+||||||+|..|++.++.  ..|+.|.
T Consensus        17 ~~~~~~vi~I~GptgsGKTtla~~La~~~~~--~iis~Ds   54 (421)
T PLN02840         17 KTKKEKVIVISGPTGAGKSRLALELAKRLNG--EIISADS   54 (421)
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHHCCC--CeEeccc
Confidence            3345668999999999999999999999884  3455544

>PRK04195 replication factor C large subunit; Provisional

Probab=96.56  E-value=0.012  Score=66.53  Aligned_cols=37  Identities=14%  Similarity=0.291  Sum_probs=30.4

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehh
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQD   54 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D   54 (636)
                      ..+..++|.||||+||||+|+.+++.++..+..++..
T Consensus        37 ~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnas   73 (482)
T PRK04195         37 KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNAS   73 (482)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccc
Confidence            3467889999999999999999999998555556543

>PRK12377 putative replication protein; Provisional

Probab=96.55  E-value=0.0076  Score=62.38  Aligned_cols=104  Identities=12%  Similarity=0.081  Sum_probs=60.1

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCCCCcHH--HHHHHHHHHHhCCCeEEEeCC---CCCHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTKV--QCLTSASSALKKGKSVFLDRC---NLERE   91 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~~~~~~--~~~~~~~~~L~~G~~VIID~t---n~~~~   91 (636)
                      ..-++|.|+||+|||++|.+++..+   +..+..++..++.........  .....+.+.+..-..+|||..   ..+.+
T Consensus       101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~~s~~  180 (248)
T PRK12377        101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRETKN  180 (248)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCCCHH
Confidence            3568999999999999999998765   333444554333221100000  012344566777778999996   44556


Q ss_pred             HHHHHHHh--CCCCC-eEEEEEEeCCHHHHHHHHH
Q 006654           92 QRTDFVKL--GGPEV-DVHAVVLDLPAKLCISRSV  123 (636)
Q Consensus        92 ~R~~l~~l--~~~g~-~v~vV~Ld~p~e~l~~R~~  123 (636)
                      ....+..+  ..+.. ...+|-=+.+.+.+.+++.
T Consensus       181 ~~~~l~~ii~~R~~~~~ptiitSNl~~~~l~~~~~  215 (248)
T PRK12377        181 EQVVLNQIIDRRTASMRSVGMLTNLNHEAMSTLLG  215 (248)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHhh
Confidence            55555555  33321 2234444667776655433

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=96.54  E-value=0.0057  Score=63.58  Aligned_cols=31  Identities=39%  Similarity=0.552  Sum_probs=27.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEee
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARIC   52 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is   52 (636)
                      -++|.|+||+|||++|+.+++.++.++..++
T Consensus        23 ~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~   53 (262)
T TIGR02640        23 PVHLRGPAGTGKTTLAMHVARKRDRPVMLIN   53 (262)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence            4678999999999999999998887777664

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PHA02244 ATPase-like protein

Probab=96.54  E-value=0.0072  Score=65.71  Aligned_cols=68  Identities=24%  Similarity=0.314  Sum_probs=46.6

Q ss_pred             EEEEccCCCcHHHHHHHHHHHcCCCeEEeehh--hhc-C---CCCCcHHHHHHHHHHHHhCCCeEEEeCCCCCHHH
Q 006654           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQD--TIN-K---GKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQ   92 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D--~ir-~---~~~~~~~~~~~~~~~~L~~G~~VIID~tn~~~~~   92 (636)
                      |+|.|+||+|||++|+.++..++.++..++..  .+. .   ...+.+  ....+.++++.|..+|||..+.....
T Consensus       122 VLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~--~dgpLl~A~~~GgvLiLDEId~a~p~  195 (383)
T PHA02244        122 VFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKF--HETPFYEAFKKGGLFFIDEIDASIPE  195 (383)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccc--cchHHHHHhhcCCEEEEeCcCcCCHH
Confidence            67899999999999999999999888777631  110 0   111111  11344566788999999998755433

>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]

Probab=96.53  E-value=0.022  Score=56.78  Aligned_cols=110  Identities=24%  Similarity=0.279  Sum_probs=68.5

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC--------------CCC------------------------
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG--------------KSG------------------------   62 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~--------------~~~------------------------   62 (636)
                      .+|-|.|--||||||+++.+. .+|  +..||.|.+...              .+|                        
T Consensus         2 ~iVGLTGgiatGKStVs~~f~-~~G--~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~   78 (225)
T KOG3220|consen    2 LIVGLTGGIATGKSTVSQVFK-ALG--IPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPK   78 (225)
T ss_pred             eEEEeecccccChHHHHHHHH-HcC--CcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHH
Confidence            467899999999999999887 667  566887766310              000                        


Q ss_pred             --------c----HHHHHHHHHHHHhCCCe-EEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccccc
Q 006654           63 --------T----KVQCLTSASSALKKGKS-VFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHE  129 (636)
Q Consensus        63 --------~----~~~~~~~~~~~L~~G~~-VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~  129 (636)
                              +    +..+++.+...+-.|.. +|+|. ++--+.  .|..+     -...|.+-|+.++.++|+.+|..  
T Consensus        79 ~r~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDi-PLLFE~--~~~~~-----~~~tvvV~cd~~~Ql~Rl~~Rd~--  148 (225)
T KOG3220|consen   79 KRQALNKITHPAIRKEMFKEILKLLLRGYRVIVLDI-PLLFEA--KLLKI-----CHKTVVVTCDEELQLERLVERDE--  148 (225)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEec-hHHHHH--hHHhh-----eeeEEEEEECcHHHHHHHHHhcc--
Confidence                    0    11234555666677876 55666 433333  23222     12366777899999999999974  


Q ss_pred             CCCCCCChHHHHHHHHhhh
Q 006654          130 GNLQGGKAAAVVNRMLQKK  148 (636)
Q Consensus       130 ~~~~~~vp~evi~rm~~~f  148 (636)
                           -..+++-.|...++
T Consensus       149 -----lse~dAe~Rl~sQm  162 (225)
T KOG3220|consen  149 -----LSEEDAENRLQSQM  162 (225)
T ss_pred             -----ccHHHHHHHHHhcC
Confidence                 12344455555554

>cd03331 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like family, SNF2 subfamily

Probab=96.52  E-value=0.029  Score=53.86  Aligned_cols=124  Identities=15%  Similarity=0.110  Sum_probs=81.5

Q ss_pred             EEEEEcccceecccCcccccEEEeCCCCCCcCCC-ChhhHHHHHhhcH--HHHHHHHHhcCCCCCCcEEEecCCCCCCCC
Q 006654          345 FFTFVGDITRLYTGGGLCCNVIANAANWRLKPGG-GGVNAAIFSAAGP--ALEVATAERAKSLYPGNSVIVPLPSTSPLC  421 (636)
Q Consensus       345 v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~g-gGVa~AI~~aaG~--~l~~e~~~~~~~~~~G~avvT~l~~~~~~~  421 (636)
                      |..++||+++.... +.+..+|++..|..-. .| ||+++||.++.-.  ...+.|.+. +.+.-|++.+++....... 
T Consensus         2 I~yv~GD~~~p~~~-~~~~~iI~H~cN~~G~-WG~gGia~al~~k~p~~~~~Y~~~~~~-~dl~LG~~~li~v~~~~~~-   77 (152)
T cd03331           2 VRYVYGDVTHPSAV-CAEDAIIVHCVDDSGH-WGRGGLFTALEKRSDQPRKAYELAGKM-KDLHLGDLHLFPIDDKNSR-   77 (152)
T ss_pred             eEEEeCccCCCCcc-CCCCeEEEEEECCCCC-CCcchHHHHHHHhCCcHHHHHHHHHhc-CCCccccEEEEEeccccCC-
Confidence            67899999998621 0124599999999998 77 7999999998742  222234443 5677999999884221111 


Q ss_pred             CCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH----HHhhccccCCC
Q 006654          422 GREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF----LSIVRSQEKLS  478 (636)
Q Consensus       422 ~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a----~siaf~~~~~~  478 (636)
                       .-+-.+|...++....+..+.     ..-+...|++|...+-..+    .||.+|-||.+
T Consensus        78 -~~~~~~va~l~~q~~~~~~~~-----~~~~~~aL~~~L~~~~~~a~~~~~sVhmPrIg~G  132 (152)
T cd03331          78 -LKGPDWVALIVAQHRDKSNPL-----SGIKLSALEKGLKKIYFAAKQKSASVHLPRIGHS  132 (152)
T ss_pred             -CCCCeEEEEEEeEccCCCCCC-----CccCHHHHHHHHHHHHHHHHcCCCEEEeCCCCCC
Confidence             122368999999887655221     1234566666666655543    47899988854

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this subfamily contain a C-terminal macro domain that show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. In addition, they also contain an SNF2 domain, defined by the presence of seven

>smart00763 AAA_PrkA PrkA AAA domain

Probab=96.50  E-value=0.0021  Score=69.67  Aligned_cols=29  Identities=24%  Similarity=0.472  Sum_probs=25.8

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      .....+++|+|||||||||+|+.|++.++
T Consensus        75 ~~~r~il~L~GPPGsGKStla~~La~~l~  103 (361)
T smart00763       75 EERKQILYLLGPVGGGKSSLVECLKRGLE  103 (361)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            34568899999999999999999998876

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.48  E-value=0.004  Score=70.52  Aligned_cols=49  Identities=16%  Similarity=0.314  Sum_probs=40.4

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCL   68 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~   68 (636)
                      |.=|+|+||||||||-+|++++.+.+..|..|-.-++.+.+.|..+..+
T Consensus       545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAV  593 (802)
T KOG0733|consen  545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAV  593 (802)
T ss_pred             CCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHH
Confidence            6668999999999999999999999988888877777777766655433

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.48  E-value=0.0099  Score=65.74  Aligned_cols=40  Identities=23%  Similarity=0.322  Sum_probs=31.5

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc----CCCeEEeehhhhcC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTINK   58 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~----~~~~~~Is~D~ir~   58 (636)
                      ++.+++++|++||||||++.+|+..+    +.....++.|.+|.
T Consensus       222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~  265 (432)
T PRK12724        222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI  265 (432)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh
Confidence            46789999999999999999998654    33456677787663

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.46  E-value=0.021  Score=62.31  Aligned_cols=110  Identities=15%  Similarity=0.197  Sum_probs=59.4

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcCCCe---------EEeeh--------hhhc-CCC-CCcHHHHHHHHHHHHh-
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPW---------ARICQ--------DTIN-KGK-SGTKVQCLTSASSALK-   76 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~---------~~Is~--------D~ir-~~~-~~~~~~~~~~~~~~L~-   76 (636)
                      ...+..+++.||||+||||+|+.+++.+....         +..+.        |.+. +.. ...... ++.+.+.+. 
T Consensus        35 ~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~~~v~~-ir~i~~~~~~  113 (363)
T PRK14961         35 GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASRTKVEE-MREILDNIYY  113 (363)
T ss_pred             CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccccCCHHH-HHHHHHHHhc
Confidence            34577889999999999999999999875210         00000        1111 110 011122 233333322 


Q ss_pred             -----CCCeEEEeCCCC-CHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           77 -----KGKSVFLDRCNL-EREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        77 -----~G~~VIID~tn~-~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                           ..+-+|||.... +......+++. .+....+.+|......+.+.+++..|..
T Consensus       114 ~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~  171 (363)
T PRK14961        114 SPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCL  171 (363)
T ss_pred             CcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhce
Confidence                 124689998653 33344456555 5444444455554455566677777764

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=96.45  E-value=0.0073  Score=64.72  Aligned_cols=64  Identities=20%  Similarity=0.315  Sum_probs=42.4

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCCC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNL   88 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn~   88 (636)
                      .+..+++.||||+||||+|+.++..++..+..++...+..     . ..+..+...+..+..++||....
T Consensus        50 ~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~-----~-~~l~~~l~~l~~~~vl~IDEi~~  113 (328)
T PRK00080         50 ALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK-----P-GDLAAILTNLEEGDVLFIDEIHR  113 (328)
T ss_pred             CCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC-----h-HHHHHHHHhcccCCEEEEecHhh
Confidence            3456789999999999999999999885444343322211     1 11233344566777889998653

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.44  E-value=0.011  Score=66.77  Aligned_cols=30  Identities=27%  Similarity=0.338  Sum_probs=25.5

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      .+..|..+++.||||+||||+|+.+++.++
T Consensus        32 ~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~   61 (472)
T PRK14962         32 KNSISHAYIFAGPRGTGKTTVARILAKSLN   61 (472)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            344566789999999999999999999875

>PRK06893 DNA replication initiation factor; Validated

Probab=96.44  E-value=0.023  Score=57.88  Aligned_cols=24  Identities=25%  Similarity=0.288  Sum_probs=21.2

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHc
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      ..++|.|+||+|||++++.++..+
T Consensus        40 ~~l~l~G~~G~GKThL~~ai~~~~   63 (229)
T PRK06893         40 PFFYIWGGKSSGKSHLLKAVSNHY   63 (229)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            367999999999999999998764

>PRK13342 recombination factor protein RarA; Reviewed

Probab=96.44  E-value=0.016  Score=64.15  Aligned_cols=77  Identities=17%  Similarity=0.338  Sum_probs=46.5

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHh--CCCeEEEeCCC-CCHHHHHHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK--KGKSVFLDRCN-LEREQRTDF   96 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~--~G~~VIID~tn-~~~~~R~~l   96 (636)
                      +.-++|.|+||+||||+|+.+++..+..+..++.....   .......+..+.....  .+..++||... ++..+...+
T Consensus        36 ~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~---~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~L  112 (413)
T PRK13342         36 LSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSG---VKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDAL  112 (413)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccc---HHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHH
Confidence            33577899999999999999999888667666542110   0011122333332233  33457888864 455555555


Q ss_pred             HHh
Q 006654           97 VKL   99 (636)
Q Consensus        97 ~~l   99 (636)
                      +..
T Consensus       113 L~~  115 (413)
T PRK13342        113 LPH  115 (413)
T ss_pred             HHH
Confidence            555

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=96.44  E-value=0.0045  Score=70.22  Aligned_cols=40  Identities=25%  Similarity=0.403  Sum_probs=32.7

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir   57 (636)
                      ..|.-++|.||||+|||++|+.++...+.++..++...+.
T Consensus        86 ~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~  125 (495)
T TIGR01241        86 KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV  125 (495)
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH
Confidence            3455689999999999999999999998777777765543

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>PRK00023 cmk cytidylate kinase; Provisional

Probab=96.42  E-value=0.0026  Score=64.76  Aligned_cols=35  Identities=20%  Similarity=0.400  Sum_probs=30.1

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i   56 (636)
                      +.+|.+.|+|||||||+|+.|++.++  +.+++.+.+
T Consensus         4 ~~~i~i~g~~gsGksti~~~la~~~~--~~~~~~~~~   38 (225)
T PRK00023          4 AIVIAIDGPAGSGKGTVAKILAKKLG--FHYLDTGAM   38 (225)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC--CCcccCchh
Confidence            46899999999999999999999998  556776553

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=96.41  E-value=0.0071  Score=71.85  Aligned_cols=50  Identities=20%  Similarity=0.318  Sum_probs=39.6

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCL   68 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~   68 (636)
                      .|.-++|.||||+|||++|+.++...+.++..++..++...+.+..+..+
T Consensus       486 ~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i  535 (733)
T TIGR01243       486 PPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAI  535 (733)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHH
Confidence            45568899999999999999999999988877877666666666554433

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.41  E-value=0.018  Score=64.79  Aligned_cols=110  Identities=14%  Similarity=0.178  Sum_probs=59.7

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcCCCe------EEe---eh--------hhhc-CC-CCCcHHHHHHHHHHHH--
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPW------ARI---CQ--------DTIN-KG-KSGTKVQCLTSASSAL--   75 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~------~~I---s~--------D~ir-~~-~~~~~~~~~~~~~~~L--   75 (636)
                      ...+..+++.|+||+||||+|+.+++.++...      +..   +.        |.+. +. .....+. ++.+.+.+  
T Consensus        37 ~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas~~gVd~-IReL~e~l~~  115 (484)
T PRK14956         37 GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRGIEN-IRELRDNVKF  115 (484)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhhcccHHH-HHHHHHHHHh
Confidence            33466789999999999999999999876310      000   10        1110 00 0000111 12222222  


Q ss_pred             --hCC--CeEEEeCCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           76 --KKG--KSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        76 --~~G--~~VIID~tn-~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                        ..|  +.+|||-.. ++......+++. .+....+.+|........+..++..|..
T Consensus       116 ~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq  173 (484)
T PRK14956        116 APMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQ  173 (484)
T ss_pred             hhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhh
Confidence              122  368999865 555566666666 5544444444444455566677777754

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=96.36  E-value=0.0086  Score=63.08  Aligned_cols=64  Identities=17%  Similarity=0.304  Sum_probs=40.8

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCCC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNL   88 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn~   88 (636)
                      .+..++|.||||+|||++|+.++..++..+..++...+.     .... +......+..+..++||....
T Consensus        29 ~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~-----~~~~-l~~~l~~~~~~~vl~iDEi~~   92 (305)
T TIGR00635        29 ALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALE-----KPGD-LAAILTNLEEGDVLFIDEIHR   92 (305)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhc-----Cchh-HHHHHHhcccCCEEEEehHhh
Confidence            345588999999999999999999987544333322111     1111 222334456677789998653

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=96.36  E-value=0.036  Score=58.47  Aligned_cols=65  Identities=17%  Similarity=0.256  Sum_probs=38.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcC-------CCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCC
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSA-------RPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN   87 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~-------~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn   87 (636)
                      -+++.|+||+||||+|+.+++.+.       .++..++.+.+.....+........+.+. ..|..++||...
T Consensus        60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~-a~~gvL~iDEi~  131 (284)
T TIGR02880        60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKR-AMGGVLFIDEAY  131 (284)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHH-ccCcEEEEechh
Confidence            588999999999999988876542       13556666555433333222111111111 134567888753

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=96.36  E-value=0.0064  Score=70.19  Aligned_cols=40  Identities=25%  Similarity=0.548  Sum_probs=35.1

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK   58 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~   58 (636)
                      +..++.|+||||.|||++++.+|+.+++.|++++..=+|+
T Consensus       349 kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrD  388 (782)
T COG0466         349 KGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRD  388 (782)
T ss_pred             CCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCcccc
Confidence            4468899999999999999999999999999999755554

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=96.34  E-value=0.0078  Score=68.13  Aligned_cols=56  Identities=16%  Similarity=0.201  Sum_probs=44.5

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHH
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSAS   72 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~   72 (636)
                      -..+.-++|.||||+|||.+|++++...+.++..++.-.+...|.+..+..++.+-
T Consensus       273 ~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F  328 (494)
T COG0464         273 LRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELF  328 (494)
T ss_pred             CCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHH
Confidence            34566899999999999999999999888777777766777888887766554433

>PRK08116 hypothetical protein; Validated

Probab=96.34  E-value=0.012  Score=61.59  Aligned_cols=102  Identities=11%  Similarity=0.100  Sum_probs=58.5

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCC----CCCcHHHHHHHHHHHHhCCCeEEEeCCC---CC
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKG----KSGTKVQCLTSASSALKKGKSVFLDRCN---LE   89 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~----~~~~~~~~~~~~~~~L~~G~~VIID~tn---~~   89 (636)
                      ..-++|.|+||+|||.||..++..+   +.++..++...+...    .......-...+.+.+.....+|||+..   .+
T Consensus       114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~~t  193 (268)
T PRK08116        114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGAERDT  193 (268)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccCCCCC
Confidence            3458999999999999999998764   445555665443211    1000011123345566666778999952   34


Q ss_pred             HHHHHHHHHh--CC--CCCeEEEEEEeCCHHHHHHHH
Q 006654           90 REQRTDFVKL--GG--PEVDVHAVVLDLPAKLCISRS  122 (636)
Q Consensus        90 ~~~R~~l~~l--~~--~g~~v~vV~Ld~p~e~l~~R~  122 (636)
                      .+....+..+  ..  .+. ..++--+.+.+.+..+.
T Consensus       194 ~~~~~~l~~iin~r~~~~~-~~IiTsN~~~~eL~~~~  229 (268)
T PRK08116        194 EWAREKVYNIIDSRYRKGL-PTIVTTNLSLEELKNQY  229 (268)
T ss_pred             HHHHHHHHHHHHHHHHCCC-CEEEECCCCHHHHHHHH
Confidence            4555555554  22  222 23444567776665543

>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]

Probab=96.30  E-value=0.0074  Score=61.14  Aligned_cols=28  Identities=32%  Similarity=0.379  Sum_probs=23.8

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      .+....++-|+|+||+||||.+..+.+.
T Consensus       115 ~~n~~~l~glag~pGtgkst~~a~v~~a  142 (323)
T KOG2702|consen  115 TSNNEELTGLAGRPGTGKSTRIAAVDNA  142 (323)
T ss_pred             cccchheeeeecCCCCcchhHHHHHHhh
Confidence            3455679999999999999999998764

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=96.30  E-value=0.0088  Score=71.09  Aligned_cols=69  Identities=20%  Similarity=0.264  Sum_probs=46.5

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHH-HHHHHHhCC-CeEEEeCC
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLT-SASSALKKG-KSVFLDRC   86 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~-~~~~~L~~G-~~VIID~t   86 (636)
                      ..|.-|+|.|+||+||||+++.++..++.++..++...+.....+.....+. ....+.... ..++||..
T Consensus       210 ~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEi  280 (733)
T TIGR01243       210 EPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEI  280 (733)
T ss_pred             CCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehh
Confidence            3456789999999999999999999998777778766665555454433332 333333322 34777873

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=96.26  E-value=0.0075  Score=63.49  Aligned_cols=39  Identities=26%  Similarity=0.323  Sum_probs=31.6

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc----C-CCeEEeehhhhc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS----A-RPWARICQDTIN   57 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~----~-~~~~~Is~D~ir   57 (636)
                      .+.+|+|+||+|+||||++.+|+..+    + .....|+.|.++
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r  236 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR  236 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence            57799999999999999999988654    3 456778888765

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.26  E-value=0.023  Score=62.49  Aligned_cols=39  Identities=18%  Similarity=0.243  Sum_probs=31.4

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir   57 (636)
                      +|.+|+|+|++|+||||++.+|+..+   +.....++.|.+|
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R  281 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR  281 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence            46789999999999999999998654   2345677888775

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.23  E-value=0.02  Score=62.58  Aligned_cols=71  Identities=18%  Similarity=0.270  Sum_probs=46.0

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc----C-CCeEEeehhhhcCCCCC-----------------cHHHHHHHHHHHHh
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS----A-RPWARICQDTINKGKSG-----------------TKVQCLTSASSALK   76 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~----~-~~~~~Is~D~ir~~~~~-----------------~~~~~~~~~~~~L~   76 (636)
                      ...+++|+||+|+||||++.+|+..+    + .....+..|.++.+...                 +... +..+...+.
T Consensus       136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~-l~~~l~~l~  214 (374)
T PRK14722        136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGD-LQLALAELR  214 (374)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCccc-HHHHHHHhc
Confidence            45689999999999999999998653    3 24556777777532110                 0111 123344556


Q ss_pred             CCCeEEEeCCCCCH
Q 006654           77 KGKSVFLDRCNLER   90 (636)
Q Consensus        77 ~G~~VIID~tn~~~   90 (636)
                      ....++||..-+.+
T Consensus       215 ~~DlVLIDTaG~~~  228 (374)
T PRK14722        215 NKHMVLIDTIGMSQ  228 (374)
T ss_pred             CCCEEEEcCCCCCc
Confidence            66778999976654

>PRK08727 hypothetical protein; Validated

Probab=96.22  E-value=0.047  Score=55.75  Aligned_cols=23  Identities=17%  Similarity=0.364  Sum_probs=20.1

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHH
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ..++|.|++|+|||++++.++..
T Consensus        42 ~~l~l~G~~G~GKThL~~a~~~~   64 (233)
T PRK08727         42 DWLYLSGPAGTGKTHLALALCAA   64 (233)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            45899999999999999998654

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.21  E-value=0.029  Score=61.41  Aligned_cols=41  Identities=22%  Similarity=0.272  Sum_probs=32.9

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcC
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINK   58 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~   58 (636)
                      ..+.+++++||.|+||||++.+|+..+   +.....++.|.+|.
T Consensus       204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~  247 (407)
T PRK12726        204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS  247 (407)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence            457899999999999999999998654   34466788888764

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.17  E-value=0.011  Score=64.97  Aligned_cols=40  Identities=25%  Similarity=0.285  Sum_probs=32.0

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHc-------CCCeEEeehhhhc
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSS-------ARPWARICQDTIN   57 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~-------~~~~~~Is~D~ir   57 (636)
                      ..|.+|+++|++|+||||.+.+|+..+       +.....++.|.+|
T Consensus       172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R  218 (388)
T PRK12723        172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYR  218 (388)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCcc
Confidence            357899999999999999999998754       2345667888775

>KOG0234 consensus Fructose-6-phosphate 2-kinase/fructose-2,6-biphosphatase [Carbohydrate transport and metabolism]

Probab=96.16  E-value=0.04  Score=60.70  Aligned_cols=130  Identities=15%  Similarity=0.201  Sum_probs=79.6

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhcCC---------CC----C----cHHH----HHHHH
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKG---------KS----G----TKVQ----CLTSA   71 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir~~---------~~----~----~~~~----~~~~~   71 (636)
                      ....+.+|+|+|+|++|||.++.++-+-+.   .+....+...+++.         .+    .    .+.+    ....+
T Consensus        24 ~~~~~~~ivmvglpA~gKt~is~kl~ryl~w~~~~tk~fn~g~yrr~~~~~~~s~~ff~p~n~~~~~lr~~~a~~~l~D~  103 (438)
T KOG0234|consen   24 FMGSKLVIVMVGLPARGKTYISSKLTRYLNWLGVNTKVFNVGEYRREAVKKVDSEPFFLPDNAEASKLRKQLALLALNDL  103 (438)
T ss_pred             ccCCceEEEEecCCccCcchhhhhHHHHHHhhccccccccHHHHHHHHhcccccccccccCChhhhhhhHHHHHHHhhhH
Confidence            345678999999999999999999987654   11122222222210         00    0    1112    22333


Q ss_pred             HHHH--hCCCeEEEeCCCCCHHHHHHHHHh-C-CCCCeEEEEEEeCCHHHHHHHHHh-cccccCCCCCCChHHHHHHHH
Q 006654           72 SSAL--KKGKSVFLDRCNLEREQRTDFVKL-G-GPEVDVHAVVLDLPAKLCISRSVK-RIEHEGNLQGGKAAAVVNRML  145 (636)
Q Consensus        72 ~~~L--~~G~~VIID~tn~~~~~R~~l~~l-~-~~g~~v~vV~Ld~p~e~l~~R~~~-R~~~~~~~~~~vp~evi~rm~  145 (636)
                      ...+  ..|...|.|.||-++..|..+... + +.+..+..+.--+.+..++.++.. +........+-..+++.+-+.
T Consensus       104 ~~~l~~~~g~vai~Datnttr~rrk~i~~~~~~~~~~kv~FiEs~c~D~~ii~~NI~~~~~~spdy~~~~~e~a~~dfl  182 (438)
T KOG0234|consen  104 LHFLIKENGQVAIFDATNTTRERRKRIIDFAEREAGFKVFFIESVCNDPNLINNNIREVKHVSPDYKGKDQEEALKDFL  182 (438)
T ss_pred             HHHhhccCCceEEecCCCCCHHHHHHHHHHHhhcCCceEEEEEeecCCchhHHhhhhhhhhcCCCcCCCCHHHHHHHHH
Confidence            3444  356678999999999999999999 6 677777666666777777777776 443322222333444444433

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=96.11  E-value=0.012  Score=65.18  Aligned_cols=37  Identities=24%  Similarity=0.443  Sum_probs=31.5

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir   57 (636)
                      .-++|+||||+|||++|+.|++.++.++..++...+.
T Consensus       109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~  145 (412)
T PRK05342        109 SNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLT  145 (412)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence            4588999999999999999999998888777765553

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=96.06  E-value=0.0051  Score=63.19  Aligned_cols=30  Identities=33%  Similarity=0.550  Sum_probs=21.6

Q ss_pred             EEccCCCcHHHHHHHHHHHcC---CCeEEeehh
Q 006654           25 MVGAPGSGKSTFCEHVMRSSA---RPWARICQD   54 (636)
Q Consensus        25 LvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D   54 (636)
                      ++|||||||||+++.+.+-+.   ++...||.|
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLD   33 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLD   33 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcc
Confidence            479999999999999887654   556667643

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PRK05642 DNA replication initiation factor; Validated

Probab=96.03  E-value=0.027  Score=57.55  Aligned_cols=36  Identities=17%  Similarity=0.244  Sum_probs=26.3

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhh
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI   56 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~i   56 (636)
                      ..++|.|++|+|||.|++.++...   +..+..++.+.+
T Consensus        46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~   84 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAEL   84 (234)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHH
Confidence            467899999999999999987542   334555665544

>TIGR03689 pup_AAA proteasome ATPase

Probab=96.01  E-value=0.014  Score=66.33  Aligned_cols=27  Identities=33%  Similarity=0.485  Sum_probs=24.0

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      .|.-++|.||||+|||++|+.++..++
T Consensus       215 ~p~GILLyGPPGTGKT~LAKAlA~eL~  241 (512)
T TIGR03689       215 PPKGVLLYGPPGCGKTLIAKAVANSLA  241 (512)
T ss_pred             CCcceEEECCCCCcHHHHHHHHHHhhc
Confidence            456689999999999999999999876

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>CHL00176 ftsH cell division protein; Validated

Probab=96.00  E-value=0.011  Score=69.01  Aligned_cols=39  Identities=23%  Similarity=0.435  Sum_probs=32.3

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir   57 (636)
                      .|.-++|.||||+|||++|+.++.+.+.++..++...+.
T Consensus       215 ~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~  253 (638)
T CHL00176        215 IPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFV  253 (638)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHH
Confidence            356689999999999999999999988777777655543

>PLN03025 replication factor C subunit; Provisional

Probab=95.98  E-value=0.03  Score=59.80  Aligned_cols=26  Identities=27%  Similarity=0.364  Sum_probs=22.2

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      ..|. +++.||||+||||+|+.+++.+
T Consensus        33 ~~~~-lll~Gp~G~GKTtla~~la~~l   58 (319)
T PLN03025         33 NMPN-LILSGPPGTGKTTSILALAHEL   58 (319)
T ss_pred             CCce-EEEECCCCCCHHHHHHHHHHHH
Confidence            3454 6789999999999999999886

>COG1660 Predicted P-loop-containing kinase [General function prediction only]

Probab=95.97  E-value=0.026  Score=58.23  Aligned_cols=102  Identities=18%  Similarity=0.189  Sum_probs=60.3

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhC---CCeEEEeCCCCCH-HHHHHH
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKK---GKSVFLDRCNLER-EQRTDF   96 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~---G~~VIID~tn~~~-~~R~~l   96 (636)
                      .+|++.|++|||||+-.+.|-. +|  |..+  |.+-.   .....+.+.+. ....   .-.|++|--++.- ..-..+
T Consensus         2 ~lvIVTGlSGAGKsvAl~~lED-lG--yycv--DNLPp---~Llp~~~~~~~-~~~~~~~kvAv~iDiRs~~~~~~l~~~   72 (286)
T COG1660           2 RLVIVTGLSGAGKSVALRVLED-LG--YYCV--DNLPP---QLLPKLADLML-TLESRITKVAVVIDVRSREFFGDLEEV   72 (286)
T ss_pred             cEEEEecCCCCcHHHHHHHHHh-cC--eeee--cCCCH---HHHHHHHHHHh-hcccCCceEEEEEecccchhHHHHHHH
Confidence            4789999999999998887754 45  5333  33310   01111222221 1111   1248889866532 222333


Q ss_pred             HHh-CCC-CCeEEEEEEeCCHHHHHHHHH-hcccccCC
Q 006654           97 VKL-GGP-EVDVHAVVLDLPAKLCISRSV-KRIEHEGN  131 (636)
Q Consensus        97 ~~l-~~~-g~~v~vV~Ld~p~e~l~~R~~-~R~~~~~~  131 (636)
                      +.. ++. ++.+.+++|+++.+++++|-. .|..||..
T Consensus        73 l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~etRR~HPL~  110 (286)
T COG1660          73 LDELKDNGDIDPRVLFLEADDETLVRRYSETRRSHPLS  110 (286)
T ss_pred             HHHHHhcCCCCceEEEEECchhHHHHHHhhhhhcCCCC
Confidence            333 444 456789999999999999976 45566654

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.97  E-value=0.045  Score=63.58  Aligned_cols=113  Identities=18%  Similarity=0.227  Sum_probs=63.5

Q ss_pred             cccCccEEEEEEccCCCcHHHHHHHHHHHcCCCe--------------EEeeh--------hhhc-CC-CCCcHHHHHHH
Q 006654           15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPW--------------ARICQ--------DTIN-KG-KSGTKVQCLTS   70 (636)
Q Consensus        15 ~~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~--------------~~Is~--------D~ir-~~-~~~~~~~~~~~   70 (636)
                      .....+..++|.|++|.||||+|+.|++.+.+.-              +..|.        |.+. +. ....-+++.+.
T Consensus        33 ~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReL  112 (700)
T PRK12323         33 EQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQL  112 (700)
T ss_pred             HhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccccCCHHHHHHH
Confidence            3445678899999999999999999999876310              00010        1111 00 00111222122


Q ss_pred             HHHHH---hCC--CeEEEeCCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           71 ASSAL---KKG--KSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        71 ~~~~L---~~G--~~VIID~tn-~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      +....   ..|  +.+|||... ++......+++. .+....+.+|........+...+..|..
T Consensus       113 ie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq  176 (700)
T PRK12323        113 LDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCL  176 (700)
T ss_pred             HHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHH
Confidence            22111   122  468999865 555566666666 6654445566666666666666666654

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=95.95  E-value=0.013  Score=58.65  Aligned_cols=63  Identities=16%  Similarity=0.224  Sum_probs=40.3

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCC
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN   87 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn   87 (636)
                      ...+..++|.|+||+||||+|+.++....   ..+..++.+.+....        ..+...+.....+|||...
T Consensus        35 ~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~lLvIDdi~  100 (226)
T TIGR03420        35 GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--------PEVLEGLEQADLVCLDDVE  100 (226)
T ss_pred             cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------HHHHhhcccCCEEEEeChh
Confidence            34566889999999999999999987653   345556554442110        1222334445568888854

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.94  E-value=0.059  Score=61.82  Aligned_cols=111  Identities=15%  Similarity=0.194  Sum_probs=58.6

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcCCCe------EEee-----------hhhhc-CC--CCCcH--HHHHHHHHHH
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPW------ARIC-----------QDTIN-KG--KSGTK--VQCLTSASSA   74 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~------~~Is-----------~D~ir-~~--~~~~~--~~~~~~~~~~   74 (636)
                      ...+..+++.|+||+||||+|+.+++.+.+..      +..+           .|.+. +.  ..+-.  ..+...+...
T Consensus        35 ~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~  114 (546)
T PRK14957         35 QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYM  114 (546)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhh
Confidence            34566789999999999999999998765210      0000           01111 10  11111  1122222211


Q ss_pred             Hh--CCCeEEEeCCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           75 LK--KGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        75 L~--~G~~VIID~tn-~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      -.  ..+-+|||... ++......+++. .+....+.+|........+..-+..|..
T Consensus       115 p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~  171 (546)
T PRK14957        115 PSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCI  171 (546)
T ss_pred             hhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHhee
Confidence            11  23468888854 555566667666 6543334455555555544444666653

>PRK07952 DNA replication protein DnaC; Validated

Probab=95.93  E-value=0.026  Score=58.26  Aligned_cols=102  Identities=12%  Similarity=0.098  Sum_probs=57.0

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCCCCcH---HHHHHHHHHHHhCCCeEEEeCCC---CCHH
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTK---VQCLTSASSALKKGKSVFLDRCN---LERE   91 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~~~~~---~~~~~~~~~~L~~G~~VIID~tn---~~~~   91 (636)
                      ..++|.|+||+|||+++.+++..+   +..+..++..++......+.   ..-...+.+.+..-..+|||+..   .+.+
T Consensus       100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~~~s~~  179 (244)
T PRK07952        100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQTESRY  179 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCCCCCHH
Confidence            468999999999999999998776   33455555433321110000   01112344556666678999953   3334


Q ss_pred             HHHHHHHh--CCCC-CeEEEEEEeCCHHHHHHHH
Q 006654           92 QRTDFVKL--GGPE-VDVHAVVLDLPAKLCISRS  122 (636)
Q Consensus        92 ~R~~l~~l--~~~g-~~v~vV~Ld~p~e~l~~R~  122 (636)
                      ....+..+  .++. ....++-=+.+.+.+.+++
T Consensus       180 ~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~~  213 (244)
T PRK07952        180 EKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLL  213 (244)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHHh
Confidence            44444444  2222 2223444467777766544

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=95.91  E-value=0.027  Score=61.69  Aligned_cols=81  Identities=21%  Similarity=0.284  Sum_probs=57.1

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC-----CCeEEeehhhhcCCCCC----------------cHHHHHHHHHHHHhC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTINKGKSG----------------TKVQCLTSASSALKK   77 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~-----~~~~~Is~D~ir~~~~~----------------~~~~~~~~~~~~L~~   77 (636)
                      +..+|+|+||.|.||||--.+||.++.     .....|.+|.+|-+...                ...+-+..+...|+.
T Consensus       202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~  281 (407)
T COG1419         202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD  281 (407)
T ss_pred             cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence            478999999999999998888887654     34678899999865322                112234666777787


Q ss_pred             CCeEEEeCCCCCHH---HHHHHHHh
Q 006654           78 GKSVFLDRCNLERE---QRTDFVKL   99 (636)
Q Consensus        78 G~~VIID~tn~~~~---~R~~l~~l   99 (636)
                      -+.|.||..-++..   ...++..+
T Consensus       282 ~d~ILVDTaGrs~~D~~~i~el~~~  306 (407)
T COG1419         282 CDVILVDTAGRSQYDKEKIEELKEL  306 (407)
T ss_pred             CCEEEEeCCCCCccCHHHHHHHHHH
Confidence            78899999766654   44444444

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=95.88  E-value=0.11  Score=57.50  Aligned_cols=67  Identities=7%  Similarity=0.105  Sum_probs=37.9

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHc-----CCCeEEeehhhhcCCCCCcHH-HHHHHHHHHHhCCCeEEEeCCC
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSS-----ARPWARICQDTINKGKSGTKV-QCLTSASSALKKGKSVFLDRCN   87 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~-----~~~~~~Is~D~ir~~~~~~~~-~~~~~~~~~L~~G~~VIID~tn   87 (636)
                      ..++|.|+||+|||+++++++..+     +..+..++.+.+......... .......+.++.-..+|||...
T Consensus       137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~  209 (405)
T TIGR00362       137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQ  209 (405)
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhh
Confidence            357899999999999999988654     334555665444211000000 0012223344445567778754

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]

Probab=95.88  E-value=0.11  Score=52.80  Aligned_cols=117  Identities=14%  Similarity=0.160  Sum_probs=67.8

Q ss_pred             cCcc-EEEEEEccCCCcHHHHHHHHHHHcCCCe-EEeehhhh--c----------------------CCCCCcHH-----
Q 006654           17 KWKQ-ILVIMVGAPGSGKSTFCEHVMRSSARPW-ARICQDTI--N----------------------KGKSGTKV-----   65 (636)
Q Consensus        17 ~~~p-~LIvLvG~PGSGKSTlAr~Lak~~~~~~-~~Is~D~i--r----------------------~~~~~~~~-----   65 (636)
                      ++++ .-++|+|+.|+||+|+...|.++++..+ +.++.+.-  |                      ++.+..+.     
T Consensus        33 ~p~~~~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~gn  112 (231)
T KOG0707|consen   33 PPGDFKPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSGN  112 (231)
T ss_pred             CCCCCceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhhhhcc
Confidence            3344 6789999999999999999999987322 22221110  0                      00000000     


Q ss_pred             ---HHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEe-CCHHHHHHHHHhcccccCCCCCCChHHHH
Q 006654           66 ---QCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLD-LPAKLCISRSVKRIEHEGNLQGGKAAAVV  141 (636)
Q Consensus        66 ---~~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld-~p~e~l~~R~~~R~~~~~~~~~~vp~evi  141 (636)
                         .....+++....|+..|+|--      .+.-..++......+.+++. ++..++.+|+..|..       +.-.+.+
T Consensus       113 ~yGtsi~av~~~~~~gk~~ildId------~qg~~~i~~~~~~~i~i~~~pps~~~~e~rl~~rgt-------e~~~~l~  179 (231)
T KOG0707|consen  113 KYGTSIAAVQRLMLSGKVCILDID------LQGVQPIRATSLDAIYIFIKPPSIKILEERLRARGT-------ETEESLL  179 (231)
T ss_pred             cCCchHHHHHHHHhcCCcceeehh------hcCceeeecCCCceEEEEecCCcchhHHHHhhccCc-------chHHHHH
Confidence               112455566677777777661      11111112233344555655 667899999999955       4667777


Q ss_pred             HHHHh
Q 006654          142 NRMLQ  146 (636)
Q Consensus       142 ~rm~~  146 (636)
                      +++..
T Consensus       180 ~r~~s  184 (231)
T KOG0707|consen  180 KRLKS  184 (231)
T ss_pred             HHHHh
Confidence            77773

>PRK06921 hypothetical protein; Provisional

Probab=95.86  E-value=0.031  Score=58.46  Aligned_cols=98  Identities=14%  Similarity=0.072  Sum_probs=52.6

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHc----CCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCC--------
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN--------   87 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~----~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn--------   87 (636)
                      ..-++|.|+||+|||+++.+++..+    +..+..+....+......... ......+.+..-..+|||+..        
T Consensus       117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~-~~~~~~~~~~~~dlLiIDDl~~~~~g~e~  195 (266)
T PRK06921        117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFD-LLEAKLNRMKKVEVLFIDDLFKPVNGKPR  195 (266)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHH-HHHHHHHHhcCCCEEEEeccccccCCCcc
Confidence            4568999999999999999998764    323333443222111000111 112234455666779999962        


Q ss_pred             CCHHHHHHHHHh--CC--CCCeEEEEEEeCCHHHHH
Q 006654           88 LEREQRTDFVKL--GG--PEVDVHAVVLDLPAKLCI  119 (636)
Q Consensus        88 ~~~~~R~~l~~l--~~--~g~~v~vV~Ld~p~e~l~  119 (636)
                      .+.+....+..+  ..  .+. ..+|--+.+.+.+.
T Consensus       196 ~t~~~~~~lf~iin~R~~~~k-~tIitsn~~~~el~  230 (266)
T PRK06921        196 ATEWQIEQMYSVLNYRYLNHK-PILISSELTIDELL  230 (266)
T ss_pred             CCHHHHHHHHHHHHHHHHCCC-CEEEECCCCHHHHh
Confidence            234444444444  22  122 23444466666554

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=95.86  E-value=0.011  Score=60.10  Aligned_cols=35  Identities=20%  Similarity=0.278  Sum_probs=25.9

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhh
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT   55 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~   55 (636)
                      +..|.++++.|+||+||||+|+.+..+    ..+++.|.
T Consensus         9 ~~~~~~~liyG~~G~GKtt~a~~~~~~----~~~~~~d~   43 (220)
T TIGR01618         9 KRIPNMYLIYGKPGTGKTSTIKYLPGK----TLVLSFDM   43 (220)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHhcCCC----CEEEeccc
Confidence            344678999999999999999998522    34455544

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.85  E-value=0.056  Score=59.67  Aligned_cols=30  Identities=20%  Similarity=0.141  Sum_probs=25.7

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ....|.-+++.||||+||||+|+.+++.+.
T Consensus        34 ~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~   63 (397)
T PRK14955         34 MGRVGHGYIFSGLRGVGKTTAARVFAKAVN   63 (397)
T ss_pred             hCCcceeEEEECCCCCCHHHHHHHHHHHhc
Confidence            344567789999999999999999999875

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.84  E-value=0.012  Score=63.18  Aligned_cols=53  Identities=17%  Similarity=0.336  Sum_probs=39.8

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSA   71 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~   71 (636)
                      +|.=|+|-||||.|||-+|++.|.+.++.|.++..-.+-+...|.-.++++.+
T Consensus       184 PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRel  236 (406)
T COG1222         184 PPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVREL  236 (406)
T ss_pred             CCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHH
Confidence            46668999999999999999999999888877776666555555444444333

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=95.83  E-value=0.045  Score=51.60  Aligned_cols=85  Identities=20%  Similarity=0.150  Sum_probs=52.7

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCC--CeEEeehh-hh-c-CCCCCcHHHHHHHHHHHHhCCCeEEEeC--CCCCHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSAR--PWARICQD-TI-N-KGKSGTKVQCLTSASSALKKGKSVFLDR--CNLERE   91 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~--~~~~Is~D-~i-r-~~~~~~~~~~~~~~~~~L~~G~~VIID~--tn~~~~   91 (636)
                      +..++.++|++|||||||.+.++.....  .-+.++.. .+ . ....+-..+.+..++..+.+..-+|+|.  .++...
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~  104 (144)
T cd03221          25 PGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLE  104 (144)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence            4467899999999999999999865431  11222210 00 0 0011112234456666667777889998  457778


Q ss_pred             HHHHHHHh-CCCC
Q 006654           92 QRTDFVKL-GGPE  103 (636)
Q Consensus        92 ~R~~l~~l-~~~g  103 (636)
                      .+..+.++ ++.+
T Consensus       105 ~~~~l~~~l~~~~  117 (144)
T cd03221         105 SIEALEEALKEYP  117 (144)
T ss_pred             HHHHHHHHHHHcC
Confidence            88888777 5544

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>KOG4359 consensus Protein kinase C inhibitor-like protein [General function prediction only]

Probab=95.79  E-value=0.0056  Score=56.80  Aligned_cols=40  Identities=18%  Similarity=0.169  Sum_probs=31.9

Q ss_pred             CCeEEEcCcEEEeccCCCCCcccccccCCCCccchhccccc
Q 006654          576 DDLLEISDDVVVLNDLYPKVHPSDNLPPGTLLCICLSSINK  616 (636)
Q Consensus       576 ~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~~~~~~~~~~~~  616 (636)
                      ..++-.+++.||+||.+|+|+-||||||+. -++++-+++|
T Consensus        47 ell~~En~~~V~fkDikPaA~~HYLvipK~-Hi~~~~~L~k   86 (166)
T KOG4359|consen   47 ELLHCENEDLVCFKDIKPAATHHYLVVPKK-HIGNCRTLRK   86 (166)
T ss_pred             ceeEecCCcEEEEecCCccccceEEEechH-HcCChhhcch
Confidence            457778899999999999999999999985 3455555444

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=95.76  E-value=0.0096  Score=63.81  Aligned_cols=32  Identities=31%  Similarity=0.430  Sum_probs=28.3

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcCCCeEEee
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARIC   52 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is   52 (636)
                      .-|+|.|+||+||||+++.+++.++.++..|+
T Consensus        65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~   96 (327)
T TIGR01650        65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVN   96 (327)
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEE
Confidence            34899999999999999999999997777665

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=95.76  E-value=0.063  Score=57.05  Aligned_cols=24  Identities=29%  Similarity=0.515  Sum_probs=21.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcC
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      .+++.||||+||||+|+.+++.+.
T Consensus        38 ~lll~Gp~GtGKT~la~~~~~~l~   61 (337)
T PRK12402         38 HLLVQGPPGSGKTAAVRALARELY   61 (337)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhc
Confidence            478999999999999999998764

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=95.76  E-value=0.12  Score=51.47  Aligned_cols=56  Identities=14%  Similarity=0.201  Sum_probs=35.2

Q ss_pred             HHHHHHHhCCCeEEEeC--CCCCHHHHHHHHHh----CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           69 TSASSALKKGKSVFLDR--CNLEREQRTDFVKL----GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        69 ~~~~~~L~~G~~VIID~--tn~~~~~R~~l~~l----~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      ..++....+....+.|-  -|+.+....+..++    ...|+   .|.+.+-+..+..+...|..
T Consensus       147 aIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~Gt---TVl~ATHd~~lv~~~~~rvl  208 (223)
T COG2884         147 AIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGT---TVLMATHDLELVNRMRHRVL  208 (223)
T ss_pred             HHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCc---EEEEEeccHHHHHhccCcEE
Confidence            33333344444555554  47888766666555    44555   67778888888888777754

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=95.76  E-value=0.007  Score=61.48  Aligned_cols=35  Identities=40%  Similarity=0.779  Sum_probs=27.3

Q ss_pred             EEEEccCCCcHHHHHHHH---HHHcCCCeEEeehhhhc
Q 006654           23 VIMVGAPGSGKSTFCEHV---MRSSARPWARICQDTIN   57 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~L---ak~~~~~~~~Is~D~ir   57 (636)
                      -+++|||||||||++.-.   ....|+++..+|.|--.
T Consensus         5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaN   42 (290)
T KOG1533|consen    5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPAN   42 (290)
T ss_pred             eEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcc
Confidence            478999999999998764   45667778888876543

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.74  E-value=0.087  Score=63.18  Aligned_cols=31  Identities=13%  Similarity=0.282  Sum_probs=26.8

Q ss_pred             cccCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        15 ~~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ..+..+..++|.|+||+||||+|+.+++.+.
T Consensus        33 ~~~rl~HAyLFtGPpGtGKTTLARiLAk~Ln   63 (944)
T PRK14949         33 TQQRLHHAYLFTGTRGVGKTSLARLFAKGLN   63 (944)
T ss_pred             HhCCCCeEEEEECCCCCCHHHHHHHHHHhcc
Confidence            3445678889999999999999999999876

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=95.73  E-value=0.0098  Score=55.78  Aligned_cols=27  Identities=22%  Similarity=0.457  Sum_probs=24.6

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ...+|+|.|.+|||||||++.+++.++
T Consensus        21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg   47 (133)
T TIGR00150        21 FGTVVLLKGDLGAGKTTLVQGLLQGLG   47 (133)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            456899999999999999999999987

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=95.73  E-value=0.12  Score=58.03  Aligned_cols=35  Identities=14%  Similarity=0.288  Sum_probs=25.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhh
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI   56 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~i   56 (636)
                      -++|.|+||+|||+|++.++..+   +..+..++.+.+
T Consensus       143 pl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f  180 (445)
T PRK12422        143 PIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELF  180 (445)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHH
Confidence            36789999999999999998754   334455555443

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.72  E-value=0.066  Score=62.33  Aligned_cols=30  Identities=17%  Similarity=0.289  Sum_probs=26.1

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ....+..+++.|+||+||||+|+.+++.+.
T Consensus        33 ~grl~HAyLF~GPpGvGKTTlAriLAK~Ln   62 (702)
T PRK14960         33 RGRLHHAYLFTGTRGVGKTTIARILAKCLN   62 (702)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            344577899999999999999999999876

>PRK04296 thymidine kinase; Provisional

Probab=95.71  E-value=0.093  Score=51.90  Aligned_cols=91  Identities=18%  Similarity=0.135  Sum_probs=52.1

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeeh--hhh---c---CCC--------CCcHHHHHHHHHHHHhCC--
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ--DTI---N---KGK--------SGTKVQCLTSASSALKKG--   78 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~--D~i---r---~~~--------~~~~~~~~~~~~~~L~~G--   78 (636)
                      ..++++.|+||+||||++..++.++   +..+..+..  |.-   .   ...        .......+..+.+  ..+  
T Consensus         2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~~~~   79 (190)
T PRK04296          2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EGEKI   79 (190)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hCCCC
Confidence            4688999999999999999988765   333444422  211   0   000        0011222333333  233  


Q ss_pred             CeEEEeCCCCC-HHHHHHHHHh-CCCCCeEEEEEEe
Q 006654           79 KSVFLDRCNLE-REQRTDFVKL-GGPEVDVHAVVLD  112 (636)
Q Consensus        79 ~~VIID~tn~~-~~~R~~l~~l-~~~g~~v~vV~Ld  112 (636)
                      .-||||-..+- .++-..+.+. +..+..+.+.-++
T Consensus        80 dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~  115 (190)
T PRK04296         80 DCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLD  115 (190)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecC
Confidence            34899997654 4555667666 7777765554444

>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=95.71  E-value=0.013  Score=63.20  Aligned_cols=52  Identities=12%  Similarity=0.299  Sum_probs=42.4

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHH
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCL   68 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~   68 (636)
                      -.+|.-|+|.||||+|||-+|++++++.+.++.-++...+...|++....+.
T Consensus       124 l~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfgE~eKlv  175 (386)
T KOG0737|consen  124 LRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLV  175 (386)
T ss_pred             ccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHHHHHHHH
Confidence            3467889999999999999999999999987877776677677777665543

>cd01131 PilT Pilus retraction ATPase PilT

Probab=95.71  E-value=0.096  Score=52.09  Aligned_cols=24  Identities=38%  Similarity=0.520  Sum_probs=21.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcC
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      +|+++|++||||||+.+.++....
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            689999999999999999887664

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.64  E-value=0.057  Score=61.48  Aligned_cols=30  Identities=17%  Similarity=0.194  Sum_probs=26.2

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ....+..+++.|+||+||||+|+.+++.+.
T Consensus        32 ~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~   61 (504)
T PRK14963         32 QGRLGHAYLFSGPRGVGKTTTARLIAMAVN   61 (504)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            445678899999999999999999998864

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=95.63  E-value=0.091  Score=59.85  Aligned_cols=30  Identities=17%  Similarity=0.203  Sum_probs=25.8

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ....+..++|.|+||+||||+|+.+++.++
T Consensus        39 ~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln   68 (507)
T PRK06645         39 NDRLAGGYLLTGIRGVGKTTSARIIAKAVN   68 (507)
T ss_pred             cCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence            344467789999999999999999999876

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=95.62  E-value=0.053  Score=63.89  Aligned_cols=112  Identities=14%  Similarity=0.169  Sum_probs=59.5

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcCCCe---------EEeeh--------hhhc-CC-CCCcHHHHHHHHHHHH-
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPW---------ARICQ--------DTIN-KG-KSGTKVQCLTSASSAL-   75 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~---------~~Is~--------D~ir-~~-~~~~~~~~~~~~~~~L-   75 (636)
                      ....+..++|.|++|+||||+++.|++.+.+..         +..|.        |.+. +. .....+++...+.... 
T Consensus        34 ~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~  113 (830)
T PRK07003         34 GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVY  113 (830)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHh
Confidence            344577889999999999999999999875210         00111        1111 00 0001112212222111 


Q ss_pred             ----hCCCeEEEeCCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           76 ----KKGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        76 ----~~G~~VIID~tn-~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                          ...+.+|||... ++......+++. .+....+.+|+.......+..-+..|..
T Consensus       114 ~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq  171 (830)
T PRK07003        114 APVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCL  171 (830)
T ss_pred             ccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheE
Confidence                123568999865 444444556666 5544344555555555555555666654

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=95.62  E-value=0.016  Score=62.83  Aligned_cols=43  Identities=19%  Similarity=0.440  Sum_probs=32.8

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcC--CCeEEeehhhhcCCCCC
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQDTINKGKSG   62 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~--~~~~~Is~D~ir~~~~~   62 (636)
                      .+.|+|+||||+|||.+|-.+++++|  .||+.++.-+++.....
T Consensus        50 Gr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~k   94 (398)
T PF06068_consen   50 GRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVK   94 (398)
T ss_dssp             T-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-
T ss_pred             CcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccC
Confidence            46788999999999999999999998  58999998887654433

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=95.62  E-value=0.07  Score=64.11  Aligned_cols=112  Identities=14%  Similarity=0.161  Sum_probs=62.1

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcCCC---------eEEee----------hhhhc-CC-CCCcHHHHHHHHHHH
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARP---------WARIC----------QDTIN-KG-KSGTKVQCLTSASSA   74 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~---------~~~Is----------~D~ir-~~-~~~~~~~~~~~~~~~   74 (636)
                      ....+..++|.|++|+||||+|+.|++.+.+.         .+..|          .|.+. +. ....-+++.....+.
T Consensus        33 ~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~  112 (824)
T PRK07764         33 SGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERA  112 (824)
T ss_pred             hCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHH
Confidence            34456678999999999999999999987521         00001          11111 11 111122222211111


Q ss_pred             ----H-hCCCeEEEeCCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           75 ----L-KKGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        75 ----L-~~G~~VIID~tn-~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                          + ...+.+|||... ++......++++ .+....+++|++....+.+..-+..|..
T Consensus       113 ~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~  172 (824)
T PRK07764        113 FFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTH  172 (824)
T ss_pred             HhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhee
Confidence                1 233468999864 555666667777 6655555566555555556666666654

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=95.60  E-value=0.012  Score=56.37  Aligned_cols=26  Identities=23%  Similarity=0.630  Sum_probs=20.2

Q ss_pred             EEEEccCCCcHHHHHHHHHHHcCCCeEEe
Q 006654           23 VIMVGAPGSGKSTFCEHVMRSSARPWARI   51 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~~~~~~~~I   51 (636)
                      |+|+|.||+||||+++.|++. +  +..+
T Consensus         2 I~i~G~~stGKTTL~~~L~~~-g--~~~v   27 (163)
T PF13521_consen    2 IVITGGPSTGKTTLIEALAAR-G--YPVV   27 (163)
T ss_dssp             EEEE--TTSHHHHHHHHHHHH-T---EEE
T ss_pred             EEEECCCCCCHHHHHHHHHHc-C--CeEE
Confidence            789999999999999999988 6  4444

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=95.59  E-value=0.14  Score=57.38  Aligned_cols=65  Identities=8%  Similarity=0.122  Sum_probs=36.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHc-----CCCeEEeehhhhcCCCCCcHH-HHHHHHHHHHhCCCeEEEeCC
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSS-----ARPWARICQDTINKGKSGTKV-QCLTSASSALKKGKSVFLDRC   86 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~-----~~~~~~Is~D~ir~~~~~~~~-~~~~~~~~~L~~G~~VIID~t   86 (636)
                      -++|.|+||+|||+|++.++...     +..+..++.+.+......... .......+.++.-..+|||..
T Consensus       150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi  220 (450)
T PRK00149        150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDI  220 (450)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehh
Confidence            47899999999999999998765     223445555443211100000 011223344455556777774

>PF05729 NACHT: NACHT domain

Probab=95.59  E-value=0.0095  Score=55.89  Aligned_cols=24  Identities=33%  Similarity=0.564  Sum_probs=21.2

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHc
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +++++.|.||+||||+++.++...
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~   24 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQL   24 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHH
Confidence            368999999999999999988664

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.59  E-value=0.062  Score=61.26  Aligned_cols=111  Identities=14%  Similarity=0.213  Sum_probs=59.5

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcCCCe---------EEeeh--------hhhc-CC-CCCcHHHHHHHHHHHH-
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPW---------ARICQ--------DTIN-KG-KSGTKVQCLTSASSAL-   75 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~---------~~Is~--------D~ir-~~-~~~~~~~~~~~~~~~L-   75 (636)
                      ....+..+++.|+||+||||+|+.+++.+.+.-         +..+.        |.+. +. .....+.+ +.+.+.+ 
T Consensus        34 ~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~i-R~l~~~~~  112 (509)
T PRK14958         34 QQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDT-RELLDNIP  112 (509)
T ss_pred             hCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccCCHHHH-HHHHHHHh
Confidence            345577889999999999999999999875210         00010        1111 00 00111111 2222222 


Q ss_pred             ---hCC--CeEEEeCCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           76 ---KKG--KSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        76 ---~~G--~~VIID~tn-~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                         ..|  +.+|||... ++......+++. .+....+.+|....+...+..-+..|..
T Consensus       113 ~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~  171 (509)
T PRK14958        113 YAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCL  171 (509)
T ss_pred             hccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhh
Confidence               122  468999975 455555666666 5544444555555555444444555543

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=95.58  E-value=0.057  Score=60.23  Aligned_cols=38  Identities=29%  Similarity=0.307  Sum_probs=29.5

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHc-----CCCeEEeehhhhc
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSS-----ARPWARICQDTIN   57 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~-----~~~~~~Is~D~ir   57 (636)
                      ..+++++||+|+||||.+.+|+..+     +.....|+.|.++
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r  263 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR  263 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH
Confidence            4589999999999999998887543     2346678888764

>PLN02796 D-glycerate 3-kinase

Probab=95.57  E-value=0.015  Score=62.81  Aligned_cols=39  Identities=15%  Similarity=0.179  Sum_probs=30.0

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCC---CeEEeehhhh
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR---PWARICQDTI   56 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~---~~~~Is~D~i   56 (636)
                      ..|.+|.++|++||||||+++.|...+..   ....|+.|.+
T Consensus        98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdf  139 (347)
T PLN02796         98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDF  139 (347)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCc
Confidence            46889999999999999999999877642   2345555544

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.55  E-value=0.088  Score=62.35  Aligned_cols=71  Identities=21%  Similarity=0.301  Sum_probs=46.6

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc----C-CCeEEeehhhhcCCC----------C-------CcHHHHHHHHHHHHh
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS----A-RPWARICQDTINKGK----------S-------GTKVQCLTSASSALK   76 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~----~-~~~~~Is~D~ir~~~----------~-------~~~~~~~~~~~~~L~   76 (636)
                      .+.+|+|+||.|+||||.+.+|+..+    + .....++.|.+|.+.          .       .+... +..+.+.++
T Consensus       184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~-l~~al~~~~  262 (767)
T PRK14723        184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAAD-LRFALAALG  262 (767)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHH-HHHHHHHhc
Confidence            36799999999999999999988654    2 245567777765221          0       01222 234445556


Q ss_pred             CCCeEEEeCCCCCH
Q 006654           77 KGKSVFLDRCNLER   90 (636)
Q Consensus        77 ~G~~VIID~tn~~~   90 (636)
                      ....||||+..+.+
T Consensus       263 ~~D~VLIDTAGRs~  276 (767)
T PRK14723        263 DKHLVLIDTVGMSQ  276 (767)
T ss_pred             CCCEEEEeCCCCCc
Confidence            66679999976554

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=95.55  E-value=0.014  Score=56.98  Aligned_cols=32  Identities=28%  Similarity=0.509  Sum_probs=25.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQ   53 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~   53 (636)
                      ++++.|+||||||+||.+++...+.+...+.+
T Consensus         1 ~~li~G~~~sGKS~~a~~~~~~~~~~~~y~at   32 (169)
T cd00544           1 IILVTGGARSGKSRFAERLAAELGGPVTYIAT   32 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCeEEEEc
Confidence            47899999999999999999876645555543

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>PRK09183 transposase/IS protein; Provisional

Probab=95.54  E-value=0.045  Score=56.94  Aligned_cols=103  Identities=12%  Similarity=0.109  Sum_probs=51.9

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCCCCcHH--HHHHHHHHHHhCCCeEEEeCCC---CCHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTKV--QCLTSASSALKKGKSVFLDRCN---LERE   91 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~~~~~~--~~~~~~~~~L~~G~~VIID~tn---~~~~   91 (636)
                      ...++|+|+||+|||++|..++...   +..+..++...+.........  .........+.....+|||...   ++.+
T Consensus       102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~~~~~~  181 (259)
T PRK09183        102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQE  181 (259)
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccCCCChH
Confidence            4568899999999999999996542   323333443222111000000  0111222224444568999954   4444


Q ss_pred             HHHHHHHh--CCCCCeEEEEEEeCCHHHHHHHH
Q 006654           92 QRTDFVKL--GGPEVDVHAVVLDLPAKLCISRS  122 (636)
Q Consensus        92 ~R~~l~~l--~~~g~~v~vV~Ld~p~e~l~~R~  122 (636)
                      ....+..+  ..+.....++-=+.+.+.+.++.
T Consensus       182 ~~~~lf~li~~r~~~~s~iiTsn~~~~~w~~~~  214 (259)
T PRK09183        182 EANLFFQVIAKRYEKGSMILTSNLPFGQWDQTF  214 (259)
T ss_pred             HHHHHHHHHHHHHhcCcEEEecCCCHHHHHHHh
Confidence            44445454  22221223444466666655443

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=95.51  E-value=0.016  Score=63.96  Aligned_cols=40  Identities=18%  Similarity=0.179  Sum_probs=30.9

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhh
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTI   56 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~i   56 (636)
                      ..+|.+|.+.|++||||||+++.|...+.   .....|+.|++
T Consensus       209 ~~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDf  251 (460)
T PLN03046        209 DIPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDF  251 (460)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCc
Confidence            34789999999999999999999976653   22556676665

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=95.51  E-value=0.034  Score=61.49  Aligned_cols=39  Identities=18%  Similarity=0.131  Sum_probs=30.5

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCe-EEeehhhhc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPW-ARICQDTIN   57 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~-~~Is~D~ir   57 (636)
                      ....|+++|.+|||||||+++|++.++..+ ..+.++.+.
T Consensus       218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~~  257 (399)
T PRK08099        218 FVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVF  257 (399)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHHH
Confidence            356799999999999999999999988543 334555554

>PRK09169 hypothetical protein; Validated

Probab=95.49  E-value=0.028  Score=71.79  Aligned_cols=98  Identities=10%  Similarity=-0.052  Sum_probs=64.1

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCC-----------C-CcHHHHHHHHHHHHhCCCeEEEeCC--
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK-----------S-GTKVQCLTSASSALKKGKSVFLDRC--   86 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~-----------~-~~~~~~~~~~~~~L~~G~~VIID~t--   86 (636)
                      .-|+|+|++|+||||+++.|+..++..+  ++.|......           . ...+.....+.+.++  ..+||..-  
T Consensus      2111 ~aIvLIG~MGaGKTTIGr~LA~~Lg~~F--iDtD~kIeks~GrkI~rIFa~eG~FRe~Eaa~V~Dllr--~~vVLSTGGG 2186 (2316)
T PRK09169       2111 QARRIEREVGPLLQALLQKLAGGLRVDK--PHSVRKIAKKIGKKIARIQALRGLSPEQAAARVRDALR--WEVVLPAEGF 2186 (2316)
T ss_pred             cccceeeCCCCCHhHHHHHHHHHhCCCc--cccHHHHHHHhCCCHHHHHHhcCchHHHHHHHHHHHhc--CCeEEeCCCC
Confidence            3589999999999999999999998444  5655443211           1 122233355555554  45666653  


Q ss_pred             -CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654           87 -NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (636)
Q Consensus        87 -n~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~  128 (636)
                       ....+.|..+   +..|+   +||+..+.+.+.+|......+
T Consensus      2187 av~~~enr~~L---~~~Gl---vV~L~an~~tl~~Rty~g~NR 2223 (2316)
T PRK09169       2187 GAAVEQARQAL---GAKGL---RVMRINNGFAAPDTTYAGLNV 2223 (2316)
T ss_pred             cccCHHHHHHH---HHCCE---EEEEECCHHHHHHHhccCCCC
Confidence             3444555444   55666   889999999998888655443

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=95.49  E-value=0.014  Score=57.22  Aligned_cols=103  Identities=16%  Similarity=0.174  Sum_probs=53.7

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhc----CCC-CCcHHHHHHHHHHHHhCCCeEEEeCCCCC-
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN----KGK-SGTKVQCLTSASSALKKGKSVFLDRCNLE-   89 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir----~~~-~~~~~~~~~~~~~~L~~G~~VIID~tn~~-   89 (636)
                      ...-++|.|+||+|||.+|..++.+.   +.....++...+.    ... .+..    ......+..-..+|||+.-.. 
T Consensus        46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~----~~~~~~l~~~dlLilDDlG~~~  121 (178)
T PF01695_consen   46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSY----EELLKRLKRVDLLILDDLGYEP  121 (178)
T ss_dssp             C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTH----CHHHHHHHTSSCEEEETCTSS-
T ss_pred             cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccch----hhhcCccccccEecccccceee
Confidence            34568999999999999999987653   4445556654442    221 1111    223455666678999995443 


Q ss_pred             --HHHHHHHHHh--CCCCCeEEEEEEeCCHHHHHHHHHhc
Q 006654           90 --REQRTDFVKL--GGPEVDVHAVVLDLPAKLCISRSVKR  125 (636)
Q Consensus        90 --~~~R~~l~~l--~~~g~~v~vV~Ld~p~e~l~~R~~~R  125 (636)
                        .+.+..+.++  .+++....+|-=+.+.+.+.+....|
T Consensus       122 ~~~~~~~~l~~ii~~R~~~~~tIiTSN~~~~~l~~~~~d~  161 (178)
T PF01695_consen  122 LSEWEAELLFEIIDERYERKPTIITSNLSPSELEEVLGDR  161 (178)
T ss_dssp             --HHHHHCTHHHHHHHHHT-EEEEEESS-HHHHHT-----
T ss_pred             ecccccccchhhhhHhhcccCeEeeCCCchhhHhhccccc
Confidence              3344333333  22222233444466666666555544

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=95.47  E-value=0.035  Score=54.50  Aligned_cols=81  Identities=19%  Similarity=0.160  Sum_probs=49.9

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCC--CeEEeehhhh---cCCCCCc--HHHHHHHHHHHHhCCCeEEEeC--CCCC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSAR--PWARICQDTI---NKGKSGT--KVQCLTSASSALKKGKSVFLDR--CNLE   89 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~--~~~~Is~D~i---r~~~~~~--~~~~~~~~~~~L~~G~~VIID~--tn~~   89 (636)
                      +..++.|+|+.|||||||.+.++.....  ..+.++.-.+   .+...-+  ..+.+..++..+.....+++|-  ..+.
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~LD  103 (177)
T cd03222          24 EGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLD  103 (177)
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence            4568899999999999999998865431  1233332111   1111011  2334566666667778889998  3577


Q ss_pred             HHHHHHHHHh
Q 006654           90 REQRTDFVKL   99 (636)
Q Consensus        90 ~~~R~~l~~l   99 (636)
                      ...+..+.++
T Consensus       104 ~~~~~~l~~~  113 (177)
T cd03222         104 IEQRLNAARA  113 (177)
T ss_pred             HHHHHHHHHH
Confidence            7777665555

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]

Probab=95.45  E-value=0.04  Score=58.29  Aligned_cols=57  Identities=12%  Similarity=0.246  Sum_probs=44.5

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSAL   75 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L   75 (636)
                      .|..+.|.||||.|||-+|+.+++..+..+..+....+-.+..|...++++..-+..
T Consensus       165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA  221 (388)
T KOG0651|consen  165 PPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYA  221 (388)
T ss_pred             CCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHH
Confidence            577889999999999999999999999878777777777777776655544333333

>PRK08181 transposase; Validated

Probab=95.44  E-value=0.036  Score=58.12  Aligned_cols=102  Identities=16%  Similarity=0.112  Sum_probs=55.1

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCCCCcHH-HHHHHHHHHHhCCCeEEEeCCC---CCHHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTKV-QCLTSASSALKKGKSVFLDRCN---LEREQ   92 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~~~~~~-~~~~~~~~~L~~G~~VIID~tn---~~~~~   92 (636)
                      ..-++|+|+||+|||.+|..++...   +..+..++...+.+....... .-.....+.+..-..+|||...   .+.+.
T Consensus       106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~~~~~  185 (269)
T PRK08181        106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQAE  185 (269)
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccCCHHH
Confidence            3458999999999999999998543   333444454333221100000 0112234455666779999853   34455


Q ss_pred             HHHHHHh--CCCCCeEEEEEEeCCHHHHHHH
Q 006654           93 RTDFVKL--GGPEVDVHAVVLDLPAKLCISR  121 (636)
Q Consensus        93 R~~l~~l--~~~g~~v~vV~Ld~p~e~l~~R  121 (636)
                      ...+..+  ..++....+|--+.+...+..+
T Consensus       186 ~~~Lf~lin~R~~~~s~IiTSN~~~~~w~~~  216 (269)
T PRK08181        186 TSVLFELISARYERRSILITANQPFGEWNRV  216 (269)
T ss_pred             HHHHHHHHHHHHhCCCEEEEcCCCHHHHHHh
Confidence            5555555  2222223344446666655543

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=95.43  E-value=0.044  Score=62.31  Aligned_cols=39  Identities=26%  Similarity=0.369  Sum_probs=30.3

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc-----CCCeEEeehhhhc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS-----ARPWARICQDTIN   57 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~-----~~~~~~Is~D~ir   57 (636)
                      ...+|+|+|++|+||||++.+|+..+     +.....++.|.++
T Consensus       349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyR  392 (559)
T PRK12727        349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQR  392 (559)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccccc
Confidence            35789999999999999999988643     2345677887765

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.43  E-value=0.097  Score=59.33  Aligned_cols=112  Identities=17%  Similarity=0.175  Sum_probs=61.5

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcCCC---------eEEee--------hhhhc-CCC-CCcHHHHHHHHHHHH-
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARP---------WARIC--------QDTIN-KGK-SGTKVQCLTSASSAL-   75 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~---------~~~Is--------~D~ir-~~~-~~~~~~~~~~~~~~L-   75 (636)
                      ...-+.-+++.|+||+||||+|+.+++.+.+.         .+..|        .|.+. +.. ...-+++ +.+.+.. 
T Consensus        31 ~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~vddI-R~Iie~~~  109 (491)
T PRK14964         31 LNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDDI-KVILENSC  109 (491)
T ss_pred             cCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCCCHHHH-HHHHHHHH
Confidence            34456678999999999999999999865310         00001        11111 110 0111221 2222222 


Q ss_pred             -----hCCCeEEEeCCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654           76 -----KKGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (636)
Q Consensus        76 -----~~G~~VIID~tn-~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~  128 (636)
                           ...+-+|||... ++......+++. .+....+.+|+.....+-+...+..|...
T Consensus       110 ~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~  169 (491)
T PRK14964        110 YLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQR  169 (491)
T ss_pred             hccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhhee
Confidence                 233568999864 455555566666 55444445555555555666777777653

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.41  E-value=0.14  Score=59.24  Aligned_cols=113  Identities=13%  Similarity=0.166  Sum_probs=62.1

Q ss_pred             cccCccEEEEEEccCCCcHHHHHHHHHHHcCCC---------eEEee----------hhhhc-CC-CCCcHHH---HHHH
Q 006654           15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSARP---------WARIC----------QDTIN-KG-KSGTKVQ---CLTS   70 (636)
Q Consensus        15 ~~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~---------~~~Is----------~D~ir-~~-~~~~~~~---~~~~   70 (636)
                      .....+..+++.|++|+||||+|+.+++.+.+.         .+..+          .|.+. ++ ....-++   +...
T Consensus        30 ~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~  109 (584)
T PRK14952         30 DAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDR  109 (584)
T ss_pred             HcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccccccCHHHHHHHHHH
Confidence            344567788999999999999999999886521         00001          11111 11 0111112   1122


Q ss_pred             HHHH--HhCCCeEEEeCCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           71 ASSA--LKKGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        71 ~~~~--L~~G~~VIID~tn-~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      +...  ....+.+|||... ++......+++. .+....+.+|.+....+.+..-+..|..
T Consensus       110 ~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~  170 (584)
T PRK14952        110 AFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTH  170 (584)
T ss_pred             HHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhce
Confidence            2111  1234578999875 455555566666 6554455555555555555666666654

>PRK06835 DNA replication protein DnaC; Validated

Probab=95.36  E-value=0.04  Score=59.40  Aligned_cols=101  Identities=9%  Similarity=0.103  Sum_probs=56.4

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCC----CCcHHHHHHHHHHHHhCCCeEEEeCC---CCCH
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGK----SGTKVQCLTSASSALKKGKSVFLDRC---NLER   90 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~----~~~~~~~~~~~~~~L~~G~~VIID~t---n~~~   90 (636)
                      .-++|.|+||+|||+||.+++..+   +..+..++.+++....    ....... ....+.+..-..+|||+.   ..+.
T Consensus       184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~-~~~~~~l~~~DLLIIDDlG~e~~t~  262 (329)
T PRK06835        184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKEL-EEVYDLLINCDLLIIDDLGTEKITE  262 (329)
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhH-HHHHHHhccCCEEEEeccCCCCCCH
Confidence            568999999999999999998765   3334445554442211    0000111 111455566677899994   3445


Q ss_pred             HHHHHHHHh--CCCC-CeEEEEEEeCCHHHHHHHH
Q 006654           91 EQRTDFVKL--GGPE-VDVHAVVLDLPAKLCISRS  122 (636)
Q Consensus        91 ~~R~~l~~l--~~~g-~~v~vV~Ld~p~e~l~~R~  122 (636)
                      +....+..+  .... ....+|--+.+.+.+..+.
T Consensus       263 ~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~  297 (329)
T PRK06835        263 FSKSELFNLINKRLLRQKKMIISTNLSLEELLKTY  297 (329)
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHH
Confidence            555555555  2211 1223444566666665443

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=95.34  E-value=0.19  Score=50.90  Aligned_cols=122  Identities=14%  Similarity=0.181  Sum_probs=58.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHc-----CCCeEEeehhhhc--------CC----------------------CCC---c
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSS-----ARPWARICQDTIN--------KG----------------------KSG---T   63 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~-----~~~~~~Is~D~ir--------~~----------------------~~~---~   63 (636)
                      .++|.|++|+|||.|.++++.+.     +..+..++.+.+.        .+                      ..+   .
T Consensus        36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~~~~  115 (219)
T PF00308_consen   36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGKQRT  115 (219)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCchHH
Confidence            36899999999999999986542     2334556543321        00                      000   1


Q ss_pred             HHHHHHHHHHHHhCCCeEEEeC-CCCCH-H-HHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHH
Q 006654           64 KVQCLTSASSALKKGKSVFLDR-CNLER-E-QRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAV  140 (636)
Q Consensus        64 ~~~~~~~~~~~L~~G~~VIID~-tn~~~-~-~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~ev  140 (636)
                      ...++.........|+.+|+.+ ..... . ...++...-..|.   ++-+..|.+....++..+......  -.+++++
T Consensus       116 q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl---~~~l~~pd~~~r~~il~~~a~~~~--~~l~~~v  190 (219)
T PF00308_consen  116 QEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGL---VVELQPPDDEDRRRILQKKAKERG--IELPEEV  190 (219)
T ss_dssp             HHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSE---EEEE----HHHHHHHHHHHHHHTT----S-HHH
T ss_pred             HHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcc---hhhcCCCCHHHHHHHHHHHHHHhC--CCCcHHH
Confidence            1234455556667777777655 11111 0 1111211112233   455666665544444443322111  1578888


Q ss_pred             HHHHHhhh
Q 006654          141 VNRMLQKK  148 (636)
Q Consensus       141 i~rm~~~f  148 (636)
                      ++-+.+++
T Consensus       191 ~~~l~~~~  198 (219)
T PF00308_consen  191 IEYLARRF  198 (219)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            88877765

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=95.34  E-value=0.013  Score=54.51  Aligned_cols=30  Identities=37%  Similarity=0.643  Sum_probs=22.3

Q ss_pred             EEEEccCCCcHHHHHHHHHHHcCCCeEEee
Q 006654           23 VIMVGAPGSGKSTFCEHVMRSSARPWARIC   52 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~~~~~~~~Is   52 (636)
                      ++|.|+||.||||+++.+++..+..+.+|.
T Consensus         2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq   31 (131)
T PF07726_consen    2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQ   31 (131)
T ss_dssp             EEEES---HHHHHHHHHHHHHTT--EEEEE
T ss_pred             EeeECCCccHHHHHHHHHHHHcCCceeEEE
Confidence            689999999999999999999987776663

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.32  E-value=0.078  Score=58.94  Aligned_cols=71  Identities=18%  Similarity=0.291  Sum_probs=44.4

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc----C-CCeEEeehhhhcCCCC----------C-------cHHHHHHHHHHHHh
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS----A-RPWARICQDTINKGKS----------G-------TKVQCLTSASSALK   76 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~----~-~~~~~Is~D~ir~~~~----------~-------~~~~~~~~~~~~L~   76 (636)
                      ++.++.|+|++|+||||+..+|+..+    + .....+..|.++-+..          +       .... ...+...++
T Consensus       190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~d-l~~al~~l~  268 (420)
T PRK14721        190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIAD-LQLMLHELR  268 (420)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHH-HHHHHHHhc
Confidence            45789999999999999999998653    2 2334455566542210          0       1112 234444566


Q ss_pred             CCCeEEEeCCCCCH
Q 006654           77 KGKSVFLDRCNLER   90 (636)
Q Consensus        77 ~G~~VIID~tn~~~   90 (636)
                      ....++||..-+.+
T Consensus       269 ~~d~VLIDTaGrsq  282 (420)
T PRK14721        269 GKHMVLIDTVGMSQ  282 (420)
T ss_pred             CCCEEEecCCCCCc
Confidence            66778999865554

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=95.30  E-value=0.11  Score=54.84  Aligned_cols=22  Identities=32%  Similarity=0.625  Sum_probs=20.5

Q ss_pred             EEEEccCCCcHHHHHHHHHHHc
Q 006654           23 VIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +++.|+||+||||+++.+++.+
T Consensus        41 ~ll~G~~G~GKt~~~~~l~~~l   62 (319)
T PRK00440         41 LLFAGPPGTGKTTAALALAREL   62 (319)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6999999999999999999875

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=95.28  E-value=0.026  Score=66.28  Aligned_cols=40  Identities=20%  Similarity=0.419  Sum_probs=34.3

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG   59 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~   59 (636)
                      |+=++|+||||+|||-||+++|.+.+.||..++.-++-+.
T Consensus       344 PkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~  383 (774)
T KOG0731|consen  344 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM  383 (774)
T ss_pred             cCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence            6668999999999999999999999999988887665443

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=95.26  E-value=0.1  Score=59.04  Aligned_cols=39  Identities=18%  Similarity=0.282  Sum_probs=30.4

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc----C-CCeEEeehhhhc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS----A-RPWARICQDTIN   57 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~----~-~~~~~Is~D~ir   57 (636)
                      ++.+++|+||+|+||||.+.+|+..+    + ..+..++.|.+|
T Consensus       255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~R  298 (484)
T PRK06995        255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYR  298 (484)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccc
Confidence            45799999999999999999998654    2 245567777764

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=95.25  E-value=0.035  Score=58.08  Aligned_cols=70  Identities=19%  Similarity=0.275  Sum_probs=46.8

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTD   95 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn~~~~~R~~   95 (636)
                      .--++|.||||-||||+|..++.+++..+...+.-.+.      ..--+..+...|+.|..+.||-.+.-...-++
T Consensus        52 lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le------K~gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE  121 (332)
T COG2255          52 LDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE------KPGDLAAILTNLEEGDVLFIDEIHRLSPAVEE  121 (332)
T ss_pred             cCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc------ChhhHHHHHhcCCcCCeEEEehhhhcChhHHH
Confidence            34689999999999999999999999555444433221      11112444566788888888886655544443

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=95.24  E-value=0.014  Score=58.93  Aligned_cols=25  Identities=36%  Similarity=0.506  Sum_probs=21.6

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHH
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMR   42 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak   42 (636)
                      .+..+++++||+|||||||.|.+-.
T Consensus        26 ~~Gevv~iiGpSGSGKSTlLRclN~   50 (240)
T COG1126          26 EKGEVVVIIGPSGSGKSTLLRCLNG   50 (240)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHC
Confidence            3567899999999999999999863

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=95.24  E-value=0.28  Score=48.10  Aligned_cols=109  Identities=13%  Similarity=0.056  Sum_probs=59.5

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCC--CeEEee-hhhhcC---CCC-----------CcHHHHHHHHHHHHhCCCeE
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSAR--PWARIC-QDTINK---GKS-----------GTKVQCLTSASSALKKGKSV   81 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~--~~~~Is-~D~ir~---~~~-----------~~~~~~~~~~~~~L~~G~~V   81 (636)
                      ....++++|++||||||+.+.|......  ....+. ...+..   .+.           .........+...++....+
T Consensus        24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~  103 (186)
T cd01130          24 ARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDR  103 (186)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCE
Confidence            4568999999999999999999876542  222221 122211   000           00112335555667766666


Q ss_pred             EEeCCCCCHHHHHHHHHhCCCCCeEEEEEEe-CCHHHHHHHHHhcccc
Q 006654           82 FLDRCNLEREQRTDFVKLGGPEVDVHAVVLD-LPAKLCISRSVKRIEH  128 (636)
Q Consensus        82 IID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld-~p~e~l~~R~~~R~~~  128 (636)
                      |+=+.-+..+.+. +++....|..-.+-.+. -+.....+|+..+...
T Consensus       104 i~igEir~~ea~~-~~~a~~tGh~g~~~T~Ha~s~~~~~~Rl~~~~~~  150 (186)
T cd01130         104 IIVGEVRGGEALD-LLQAMNTGHPGGMTTIHANSAEEALTRLELLPSN  150 (186)
T ss_pred             EEEEccCcHHHHH-HHHHHhcCCCCceeeecCCCHHHHHHHHHHHHhh
Confidence            6666566666543 33331222220122232 3456677888877664

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=95.24  E-value=0.019  Score=56.33  Aligned_cols=27  Identities=19%  Similarity=0.324  Sum_probs=23.8

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ++.++.++|++|||||||++++...+.
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~l~   31 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPALC   31 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHHHh
Confidence            566899999999999999999987764

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=95.23  E-value=0.022  Score=52.73  Aligned_cols=28  Identities=25%  Similarity=0.446  Sum_probs=24.8

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      +...+|+|.|.-|||||||+|.+++.++
T Consensus        13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg   40 (123)
T PF02367_consen   13 KPGDVILLSGDLGAGKTTFVRGLARALG   40 (123)
T ss_dssp             SS-EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence            4567899999999999999999999887

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>PF13245 AAA_19: Part of AAA domain

Probab=95.22  E-value=0.018  Score=48.72  Aligned_cols=23  Identities=30%  Similarity=0.533  Sum_probs=17.0

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMR   42 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak   42 (636)
                      ..++++.|+|||||||.+..++.
T Consensus        10 ~~~~vv~g~pGtGKT~~~~~~i~   32 (76)
T PF13245_consen   10 SPLFVVQGPPGTGKTTTLAARIA   32 (76)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            45678899999999955555443

>PRK06526 transposase; Provisional

Probab=95.22  E-value=0.03  Score=58.11  Aligned_cols=101  Identities=16%  Similarity=0.119  Sum_probs=50.5

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCCCCcH-HHHHHHHHHHHhCCCeEEEeCCCC---CHHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTK-VQCLTSASSALKKGKSVFLDRCNL---EREQ   92 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~~~~~-~~~~~~~~~~L~~G~~VIID~tn~---~~~~   92 (636)
                      +.-++|+|+||+|||++|..++...   +..+..++...+.+...... ..........+..-..+|||....   ..+.
T Consensus        98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~~~~~~  177 (254)
T PRK06526         98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIPFEPEA  177 (254)
T ss_pred             CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCCCCHHH
Confidence            4568999999999999999987653   32222222222211000000 000111223344445689999653   3455


Q ss_pred             HHHHHHh--CCCCCeEEEEEEeCCHHHHHH
Q 006654           93 RTDFVKL--GGPEVDVHAVVLDLPAKLCIS  120 (636)
Q Consensus        93 R~~l~~l--~~~g~~v~vV~Ld~p~e~l~~  120 (636)
                      +..+..+  ..+.....++.-+.|...+.+
T Consensus       178 ~~~L~~li~~r~~~~s~IitSn~~~~~w~~  207 (254)
T PRK06526        178 ANLFFQLVSSRYERASLIVTSNKPFGRWGE  207 (254)
T ss_pred             HHHHHHHHHHHHhcCCEEEEcCCCHHHHHH
Confidence            5444444  222222234445667665443

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=95.20  E-value=0.03  Score=60.24  Aligned_cols=56  Identities=20%  Similarity=0.316  Sum_probs=40.7

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcC--CCeEEeehhhhcCCCCCcHHHHHHHHHHHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQDTINKGKSGTKVQCLTSASSAL   75 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~--~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L   75 (636)
                      .+-|+++||||+|||-+|-.+++++|  .||+-++...++.....-.+.+.+.+++++
T Consensus        65 GrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKTE~L~qa~RraI  122 (450)
T COG1224          65 GRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEALTQALRRAI  122 (450)
T ss_pred             ccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccHHHHHHHHHHHhh
Confidence            35689999999999999999999998  578888877776544333333444444444

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=95.19  E-value=0.019  Score=63.70  Aligned_cols=33  Identities=24%  Similarity=0.438  Sum_probs=28.1

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ   53 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~   53 (636)
                      .-++|.||||+|||++|+.|++.++.++..++.
T Consensus       117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da  149 (413)
T TIGR00382       117 SNILLIGPTGSGKTLLAQTLARILNVPFAIADA  149 (413)
T ss_pred             ceEEEECCCCcCHHHHHHHHHHhcCCCeEEech
Confidence            468999999999999999999998866755554

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=95.18  E-value=0.033  Score=65.25  Aligned_cols=39  Identities=26%  Similarity=0.474  Sum_probs=32.3

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK   58 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~   58 (636)
                      |.=|+|+|+||+||||+++.++.+.+.++..++...+..
T Consensus       185 ~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~  223 (644)
T PRK10733        185 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE  223 (644)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHH
Confidence            344899999999999999999999998887777655543

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=95.16  E-value=0.16  Score=58.95  Aligned_cols=34  Identities=12%  Similarity=0.272  Sum_probs=25.2

Q ss_pred             EEEEccCCCcHHHHHHHHHHHc-----CCCeEEeehhhh
Q 006654           23 VIMVGAPGSGKSTFCEHVMRSS-----ARPWARICQDTI   56 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~~-----~~~~~~Is~D~i   56 (636)
                      ++|.|.+|+|||.|+..++...     +..+..++.+.+
T Consensus       317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef  355 (617)
T PRK14086        317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEF  355 (617)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence            7999999999999999998754     223445555443

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=95.15  E-value=0.092  Score=61.36  Aligned_cols=30  Identities=17%  Similarity=0.232  Sum_probs=25.8

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ....+..+++.|++|+||||+|+.+++.+.
T Consensus        34 ~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~   63 (647)
T PRK07994         34 LGRLHHAYLFSGTRGVGKTTIARLLAKGLN   63 (647)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence            344567789999999999999999999876

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=95.10  E-value=0.23  Score=55.70  Aligned_cols=23  Identities=17%  Similarity=0.316  Sum_probs=20.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHc
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      -++|.|+||+|||++++.++..+
T Consensus       132 ~l~lyG~~G~GKTHLl~ai~~~l  154 (440)
T PRK14088        132 PLFIYGGVGLGKTHLLQSIGNYV  154 (440)
T ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Confidence            48999999999999999988753

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=95.10  E-value=0.22  Score=53.47  Aligned_cols=29  Identities=14%  Similarity=0.247  Sum_probs=25.0

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      +..+..++|.|+||+||||+|+.+++.+.
T Consensus        33 ~~~~~~~Ll~G~~G~GKt~~a~~la~~l~   61 (355)
T TIGR02397        33 GRIAHAYLFSGPRGTGKTSIARIFAKALN   61 (355)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            34567889999999999999999998864

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK13768 GTPase; Provisional

Probab=95.09  E-value=0.024  Score=58.68  Aligned_cols=37  Identities=24%  Similarity=0.309  Sum_probs=28.7

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhh
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDT   55 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~   55 (636)
                      |+.++++.|++||||||++..++..+   |.+...++.|-
T Consensus         1 ~~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~   40 (253)
T PRK13768          1 MMYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP   40 (253)
T ss_pred             CcEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence            56789999999999999998887544   45566676553

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=95.08  E-value=0.23  Score=50.27  Aligned_cols=36  Identities=19%  Similarity=0.326  Sum_probs=27.2

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHc----CCCeEEeeh
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQ   53 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~----~~~~~~Is~   53 (636)
                      .+..++++.|+||+|||||+.+++...    +.+...++.
T Consensus        11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~   50 (242)
T cd00984          11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL   50 (242)
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence            355799999999999999999886543    445555663

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=95.05  E-value=0.022  Score=52.90  Aligned_cols=23  Identities=30%  Similarity=0.582  Sum_probs=20.3

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHc
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      ++++.|+||+||||++..++...
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~   23 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNI   23 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHH
Confidence            36899999999999999998765

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=95.05  E-value=0.15  Score=51.50  Aligned_cols=34  Identities=18%  Similarity=0.300  Sum_probs=26.0

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeeh
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ   53 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~   53 (636)
                      ...++|.|+||+|||++|+.++...   +..+..++.
T Consensus        42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~   78 (227)
T PRK08903         42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA   78 (227)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh
Confidence            4568999999999999999998764   234555554

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=95.03  E-value=0.083  Score=56.79  Aligned_cols=36  Identities=25%  Similarity=0.261  Sum_probs=27.3

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeeh
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ   53 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~   53 (636)
                      +...++.+.|+|||||||||-+++...   +..+..|+.
T Consensus        53 p~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~   91 (325)
T cd00983          53 PKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDA   91 (325)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECc
Confidence            345689999999999999999987543   444556664

RecA couples ATP hydrolysis to DNA strand exchange.

>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome

Probab=95.02  E-value=0.022  Score=50.48  Aligned_cols=32  Identities=31%  Similarity=0.448  Sum_probs=29.3

Q ss_pred             CCCeEEEcCcEEEeccCCCCCcccccccCCCC
Q 006654          575 KDDLLEISDDVVVLNDLYPKVHPSDNLPPGTL  606 (636)
Q Consensus       575 ~~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~~  606 (636)
                      +..++|.+++++++.|.||++..|+||+||.-
T Consensus        15 ~~~iv~~~~~~~a~~~~~p~~~~h~lIiPk~h   46 (104)
T cd01278          15 PEDQVYEDDRVVVFKDIYPKARHHYLVIPKEH   46 (104)
T ss_pred             CccEEEeCCCEEEEECCCCCCCceEEEEecCC
Confidence            34599999999999999999999999999974

All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=95.02  E-value=0.18  Score=49.40  Aligned_cols=30  Identities=17%  Similarity=0.217  Sum_probs=25.3

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ...-+..+++.|+||+||||+|+.+++.+.
T Consensus        10 ~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~   39 (188)
T TIGR00678        10 KGRLAHAYLFAGPEGVGKELLALALAKALL   39 (188)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHc
Confidence            334567899999999999999999998863

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=95.02  E-value=0.023  Score=58.76  Aligned_cols=70  Identities=19%  Similarity=0.258  Sum_probs=41.5

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCC
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN   87 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn   87 (636)
                      ++..++++.|+||||||+|+.+++...   |.+...++.+.-.........+.--........|...|+|...
T Consensus        21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~~~~g~l~i~d~~~   93 (260)
T COG0467          21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSFGWDLEVYIEKGKLAILDAFL   93 (260)
T ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHHHcCCCHHHHhhcCCEEEEEccc
Confidence            566789999999999999999987543   3445556554321110001111101112556777888888843

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=95.01  E-value=0.069  Score=56.83  Aligned_cols=36  Identities=22%  Similarity=0.382  Sum_probs=31.1

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i   56 (636)
                      ++.+|+++||.|||||-+|-.|+++++  ..+||.|..
T Consensus         2 ~~~~i~I~GPTAsGKT~lai~LAk~~~--~eIIs~DSm   37 (308)
T COG0324           2 KPKLIVIAGPTASGKTALAIALAKRLG--GEIISLDSM   37 (308)
T ss_pred             CccEEEEECCCCcCHHHHHHHHHHHcC--CcEEecchh
Confidence            467899999999999999999999998  556776654

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=95.01  E-value=0.029  Score=50.64  Aligned_cols=33  Identities=21%  Similarity=0.401  Sum_probs=24.8

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i   56 (636)
                      ...+.|+|++||||||+++.+.  .+  ...++.|++
T Consensus        15 ge~v~I~GpSGsGKSTLl~~l~--~G--~i~~~g~di   47 (107)
T cd00820          15 KVGVLITGDSGIGKTELALELI--KR--KHRLVGDDN   47 (107)
T ss_pred             CEEEEEEcCCCCCHHHHHHHhh--CC--eEEEeeEeH
Confidence            4678999999999999999987  23  344554443

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=94.98  E-value=0.24  Score=51.45  Aligned_cols=40  Identities=20%  Similarity=0.458  Sum_probs=34.0

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir   57 (636)
                      ..|+-|++-||||.|||-+|++|+.+...++.++..-.+.
T Consensus       149 WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~li  188 (368)
T COG1223         149 WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELI  188 (368)
T ss_pred             cCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHH
Confidence            4688899999999999999999999988778777765543

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=94.98  E-value=0.019  Score=55.20  Aligned_cols=30  Identities=20%  Similarity=0.363  Sum_probs=19.3

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ....+.++++.|++|+||||+.+++.+...
T Consensus        20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~   49 (185)
T PF13191_consen   20 QSGSPRNLLLTGESGSGKTSLLRALLDRLA   49 (185)
T ss_dssp             SS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred             HcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            344578899999999999999999876654

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional

Probab=94.96  E-value=0.023  Score=68.38  Aligned_cols=36  Identities=19%  Similarity=0.399  Sum_probs=31.2

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir   57 (636)
                      ..+|.+-|||||||||+|+.|++.++  +.+++++.++
T Consensus        34 ~~~i~idG~~gsGKst~~~~la~~l~--~~~~~~g~~y   69 (863)
T PRK12269         34 TVIIALDGPAGSGKSSVCRLLASRLG--AQCLNTGSFY   69 (863)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC--CcEEeHHHHH
Confidence            35899999999999999999999999  6678876653

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=94.93  E-value=0.021  Score=58.74  Aligned_cols=28  Identities=18%  Similarity=0.490  Sum_probs=24.1

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ..+.+++++|++||||||+++.++..+.
T Consensus        41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        41 QREGFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            3455789999999999999999998765

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]

Probab=94.92  E-value=0.028  Score=57.79  Aligned_cols=44  Identities=20%  Similarity=0.400  Sum_probs=33.6

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG   62 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~   62 (636)
                      +|+=++|.||||+|||-++++.+......|.++....+-....|
T Consensus       188 pprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylg  231 (408)
T KOG0727|consen  188 PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLG  231 (408)
T ss_pred             CCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhc
Confidence            56778999999999999999999877666766665555443333

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=94.92  E-value=0.018  Score=63.47  Aligned_cols=26  Identities=38%  Similarity=0.611  Sum_probs=22.2

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ..=|++.|+||+||||||++|++-+.
T Consensus       263 aeGILIAG~PGaGKsTFaqAlAefy~  288 (604)
T COG1855         263 AEGILIAGAPGAGKSTFAQALAEFYA  288 (604)
T ss_pred             hcceEEecCCCCChhHHHHHHHHHHH
Confidence            34488999999999999999997654

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=94.92  E-value=0.073  Score=56.63  Aligned_cols=34  Identities=29%  Similarity=0.401  Sum_probs=28.6

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i   56 (636)
                      +.+|+++||.|||||.+|-.|++..+   ..||.|..
T Consensus         4 ~~ii~I~GpTasGKS~LAl~LA~~~~---eIIsaDS~   37 (300)
T PRK14729          4 NKIVFIFGPTAVGKSNILFHFPKGKA---EIINVDSI   37 (300)
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhCC---cEEeccHH
Confidence            44899999999999999999999943   56777665

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=94.89  E-value=0.027  Score=60.66  Aligned_cols=39  Identities=28%  Similarity=0.349  Sum_probs=29.6

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhh
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDT   55 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~   55 (636)
                      .+++.+|.+.|+||||||||+..|...+   +.....++.|.
T Consensus        53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp   94 (332)
T PRK09435         53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDP   94 (332)
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            4578899999999999999999977554   33455555443

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=94.89  E-value=0.035  Score=62.30  Aligned_cols=38  Identities=24%  Similarity=0.447  Sum_probs=32.5

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir   57 (636)
                      |+=|+|+||||.|||-|||+++-+.+.||.+.+..++.
T Consensus       337 PKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFd  374 (752)
T KOG0734|consen  337 PKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFD  374 (752)
T ss_pred             CCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchh
Confidence            67789999999999999999999999888777654443

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=94.86  E-value=0.14  Score=60.12  Aligned_cols=31  Identities=19%  Similarity=0.328  Sum_probs=26.6

Q ss_pred             cccCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        15 ~~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      .....+..++|.|++|+||||+|+.|++.+.
T Consensus        33 ~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln   63 (709)
T PRK08691         33 DEGRLHHAYLLTGTRGVGKTTIARILAKSLN   63 (709)
T ss_pred             HcCCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence            3445678899999999999999999999865

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=94.85  E-value=0.1  Score=50.10  Aligned_cols=81  Identities=15%  Similarity=0.185  Sum_probs=48.5

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCC--CeEEeehhhhc--------CCCC-----Cc--HHHHHHHHHHHHhCCCeE
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSAR--PWARICQDTIN--------KGKS-----GT--KVQCLTSASSALKKGKSV   81 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~--~~~~Is~D~ir--------~~~~-----~~--~~~~~~~~~~~L~~G~~V   81 (636)
                      +..++.|+|++|||||||.+.++.....  .-+.++...+.        ....     -+  ..+.+..++..+...+-+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~il  104 (163)
T cd03216          25 RGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLL  104 (163)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEE
Confidence            4467899999999999999999865431  12333321111        0000     01  123345555556666778


Q ss_pred             EEeC--CCCCHHHHHHHHHh
Q 006654           82 FLDR--CNLEREQRTDFVKL   99 (636)
Q Consensus        82 IID~--tn~~~~~R~~l~~l   99 (636)
                      ++|-  ..+....+..+.++
T Consensus       105 llDEP~~~LD~~~~~~l~~~  124 (163)
T cd03216         105 ILDEPTAALTPAEVERLFKV  124 (163)
T ss_pred             EEECCCcCCCHHHHHHHHHH
Confidence            8888  34677777776665

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=94.83  E-value=0.18  Score=48.51  Aligned_cols=85  Identities=22%  Similarity=0.188  Sum_probs=49.9

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCC--CeEEe---------ehhhhcC------C----CC--Cc--HHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSAR--PWARI---------CQDTINK------G----KS--GT--KVQCLTSASS   73 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~--~~~~I---------s~D~ir~------~----~~--~~--~~~~~~~~~~   73 (636)
                      +..++.++|++|||||||.+.++.....  ..+.+         .++....      .    ..  -+  ..+.+..++.
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~lara  105 (166)
T cd03223          26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARL  105 (166)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHHH
Confidence            4568899999999999999999865431  11112         1221100      0    00  01  1233455555


Q ss_pred             HHhCCCeEEEeC--CCCCHHHHHHHHHh-CCCC
Q 006654           74 ALKKGKSVFLDR--CNLEREQRTDFVKL-GGPE  103 (636)
Q Consensus        74 ~L~~G~~VIID~--tn~~~~~R~~l~~l-~~~g  103 (636)
                      .+...+-+|+|-  ..+....+..+.++ .+.+
T Consensus       106 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~  138 (166)
T cd03223         106 LLHKPKFVFLDEATSALDEESEDRLYQLLKELG  138 (166)
T ss_pred             HHcCCCEEEEECCccccCHHHHHHHHHHHHHhC
Confidence            566667788887  35667777777777 5443

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=94.82  E-value=0.02  Score=51.22  Aligned_cols=23  Identities=30%  Similarity=0.603  Sum_probs=20.4

Q ss_pred             EEEEccCCCcHHHHHHHHHHHcC
Q 006654           23 VIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      |+|.|+||.|||++|+.|++.+.
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~   23 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLL   23 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHH
Confidence            57999999999999999987754

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>TIGR00763 lon ATP-dependent protease La

Probab=94.82  E-value=0.061  Score=64.46  Aligned_cols=34  Identities=24%  Similarity=0.548  Sum_probs=29.6

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ   53 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~   53 (636)
                      ...++|+||||+||||+|+.+++.++.++..++.
T Consensus       347 ~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~  380 (775)
T TIGR00763       347 GPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSL  380 (775)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeC
Confidence            3478999999999999999999999877877763

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=94.81  E-value=0.058  Score=54.43  Aligned_cols=36  Identities=28%  Similarity=0.575  Sum_probs=26.1

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHH---cCCCeEEeeh
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQ   53 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~---~~~~~~~Is~   53 (636)
                      ++..++++.|+||+|||||+.+++..   .+.....++.
T Consensus        18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~   56 (229)
T TIGR03881        18 PRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT   56 (229)
T ss_pred             cCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence            35678999999999999999987643   2333445554

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=94.81  E-value=0.055  Score=64.41  Aligned_cols=25  Identities=28%  Similarity=0.470  Sum_probs=21.7

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +.-++|+|+||+|||++++.++++.
T Consensus       203 ~~n~lL~G~pG~GKT~l~~~la~~~  227 (731)
T TIGR02639       203 KNNPLLVGEPGVGKTAIAEGLALRI  227 (731)
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            3357899999999999999999876

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=94.80  E-value=0.043  Score=53.58  Aligned_cols=39  Identities=18%  Similarity=0.300  Sum_probs=31.2

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCC----CeEEeehhhhcC
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSAR----PWARICQDTINK   58 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~----~~~~Is~D~ir~   58 (636)
                      ...++|+||+|+|||.+|+.|++.+..    ++..+|...+..
T Consensus         3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~   45 (171)
T PF07724_consen    3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE   45 (171)
T ss_dssp             SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc
Confidence            356899999999999999999998873    567777666644

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=94.78  E-value=0.083  Score=59.37  Aligned_cols=103  Identities=17%  Similarity=0.293  Sum_probs=64.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCC-eEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHh-
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARP-WARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-   99 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~-~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l-   99 (636)
                      =|+|.||||+|||-+||++-+.++.+ --.++.-.+-+...|..+..   ++...+              ..-++|..+ 
T Consensus       258 GiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~N---vR~LFa--------------DAEeE~r~~g  320 (744)
T KOG0741|consen  258 GILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEEN---VRKLFA--------------DAEEEQRRLG  320 (744)
T ss_pred             eEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHH---HHHHHH--------------hHHHHHHhhC
Confidence            47899999999999999999988732 23455444444333433221   111111              123345555 


Q ss_pred             CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhc
Q 006654          100 GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKE  149 (636)
Q Consensus       100 ~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe  149 (636)
                      ...+  .++|.||-=+.+|.+|=..+...      .|.+.++.+++..+.
T Consensus       321 ~~Sg--LHIIIFDEiDAICKqRGS~~g~T------GVhD~VVNQLLsKmD  362 (744)
T KOG0741|consen  321 ANSG--LHIIIFDEIDAICKQRGSMAGST------GVHDTVVNQLLSKMD  362 (744)
T ss_pred             ccCC--ceEEEehhhHHHHHhcCCCCCCC------CccHHHHHHHHHhcc
Confidence            4443  46778887778888775544432      688888888887663

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=94.76  E-value=0.094  Score=54.32  Aligned_cols=26  Identities=35%  Similarity=0.500  Sum_probs=23.9

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ....+|.+.|++|+||||+|.++++.
T Consensus        17 ~~~~~v~I~G~~G~GKT~LA~~~~~~   42 (287)
T PF00931_consen   17 NEVRVVAIVGMGGIGKTTLARQVARD   42 (287)
T ss_dssp             TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred             CCeEEEEEEcCCcCCcceeeeecccc
Confidence            67889999999999999999999866

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.76  E-value=0.14  Score=55.65  Aligned_cols=30  Identities=20%  Similarity=0.320  Sum_probs=25.5

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      .+..+..+++.|+||+||||+|+.+++...
T Consensus        35 ~~~~~~~~L~~G~~G~GKt~~a~~la~~l~   64 (367)
T PRK14970         35 NNHLAQALLFCGPRGVGKTTCARILARKIN   64 (367)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            344567899999999999999999998765

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=94.75  E-value=0.21  Score=57.77  Aligned_cols=29  Identities=17%  Similarity=0.238  Sum_probs=24.9

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ...+.-+++.||||+||||+|+.+++.+.
T Consensus        35 ~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~   63 (605)
T PRK05896         35 NKLTHAYIFSGPRGIGKTSIAKIFAKAIN   63 (605)
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence            34466789999999999999999999864

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=94.74  E-value=0.06  Score=55.00  Aligned_cols=63  Identities=22%  Similarity=0.377  Sum_probs=39.2

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHH---cCCCeEEeehhhhcCCCCCcHHHHHHH-------HHHHHhCCCeEEEeCCC
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQDTINKGKSGTKVQCLTS-------ASSALKKGKSVFLDRCN   87 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~---~~~~~~~Is~D~ir~~~~~~~~~~~~~-------~~~~L~~G~~VIID~tn   87 (636)
                      ++..++++.|+||||||+||.+++..   .+.+...++.++       +..++.+.       +.+....|+..++|...
T Consensus        19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee-------~~~~i~~~~~~~g~~~~~~~~~g~l~~~d~~~   91 (237)
T TIGR03877        19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE-------HPVQVRRNMAQFGWDVRKYEEEGKFAIVDAFT   91 (237)
T ss_pred             cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC-------CHHHHHHHHHHhCCCHHHHhhcCCEEEEeccc
Confidence            35679999999999999999987654   233445555432       11122211       12344667778888743

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.70  E-value=0.22  Score=57.14  Aligned_cols=29  Identities=21%  Similarity=0.334  Sum_probs=25.3

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ...+..+++.|+||+||||+|+.+++.+.
T Consensus        35 ~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~   63 (527)
T PRK14969         35 QRLHHAYLFTGTRGVGKTTLARILAKSLN   63 (527)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            34567789999999999999999999875

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=94.63  E-value=0.054  Score=54.58  Aligned_cols=54  Identities=26%  Similarity=0.427  Sum_probs=35.5

Q ss_pred             CCCccchhhhhhhcc---ccCccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehh
Q 006654            1 MDTDIDDTCKAKDEE---KKWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD   54 (636)
Q Consensus         1 ~~~~~~~~~~~~~~~---~~~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D   54 (636)
                      ||+.+...+..-...   .-+...++.+.|+||+|||++|.+++...   +.....++.+
T Consensus         1 ~~~~i~tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e   60 (225)
T PRK09361          1 MDERLPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE   60 (225)
T ss_pred             CCccccCCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence            455555544443321   22456799999999999999999998643   3445556655

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=94.63  E-value=0.023  Score=57.35  Aligned_cols=36  Identities=25%  Similarity=0.377  Sum_probs=26.4

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHc----CCCeEEeeh
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQ   53 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~----~~~~~~Is~   53 (636)
                      ++..++++.|+||||||+||.+++...    +.+...++.
T Consensus        17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~   56 (226)
T PF06745_consen   17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF   56 (226)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES
T ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe
Confidence            456789999999999999999976432    545555654

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=94.58  E-value=0.17  Score=58.68  Aligned_cols=63  Identities=14%  Similarity=0.238  Sum_probs=40.8

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEE
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVF   82 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VI   82 (636)
                      +.=|+|-||||+|||.+|.+++...+..+..+-.-++-....|..++.++.+-+..+.-++.|
T Consensus       701 ~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCi  763 (952)
T KOG0735|consen  701 RTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCI  763 (952)
T ss_pred             ccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeE
Confidence            345899999999999999999999884454444444444445555554444444444444443

>PRK08939 primosomal protein DnaI; Reviewed

Probab=94.52  E-value=0.16  Score=54.30  Aligned_cols=105  Identities=11%  Similarity=0.032  Sum_probs=61.6

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCCCCcH-HHHHHHHHHHHhCCCeEEEeCC---CCCHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTK-VQCLTSASSALKKGKSVFLDRC---NLERE   91 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~~~~~-~~~~~~~~~~L~~G~~VIID~t---n~~~~   91 (636)
                      ...-++|.|+||+|||+++.+++..+   +..+..+....+........ ..-.....+.+..-..+|||+.   +.+.+
T Consensus       155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e~~s~~  234 (306)
T PRK08939        155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVKEAPVLMLDDIGAEQMSSW  234 (306)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcCCCEEEEecCCCccccHH
Confidence            34568999999999999999998775   33344444333211100000 0011233455667778999994   46677


Q ss_pred             HHHHHHH-h--CC-CCCeEEEEEEeCCHHHHHHHHH
Q 006654           92 QRTDFVK-L--GG-PEVDVHAVVLDLPAKLCISRSV  123 (636)
Q Consensus        92 ~R~~l~~-l--~~-~g~~v~vV~Ld~p~e~l~~R~~  123 (636)
                      .|..++. +  .+ ......++-=+.+.+.+.++..
T Consensus       235 ~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~~~~  270 (306)
T PRK08939        235 VRDEVLGVILQYRMQEELPTFFTSNFDFDELEHHLA  270 (306)
T ss_pred             HHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHh
Confidence            7754433 2  22 1223345555788888887764

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.52  E-value=0.29  Score=57.08  Aligned_cols=30  Identities=20%  Similarity=0.314  Sum_probs=26.2

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ....+..+++.|++|+||||+|+.+++.+.
T Consensus        34 ~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~Ln   63 (618)
T PRK14951         34 QQRLHHAYLFTGTRGVGKTTVSRILAKSLN   63 (618)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            445677899999999999999999998875

>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family

Probab=94.51  E-value=0.23  Score=50.85  Aligned_cols=108  Identities=17%  Similarity=0.230  Sum_probs=72.7

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHH----HHHHHHHHHH-hCCCeEEEeCCCCCHH-
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKV----QCLTSASSAL-KKGKSVFLDRCNLERE-   91 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~----~~~~~~~~~L-~~G~~VIID~tn~~~~-   91 (636)
                      ..|.||+|-|..||||+...+.|...+......+..  +..   .+..    -.+-..-+.| ..|.-.|.|+.-+... 
T Consensus        29 ~~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~--~~~---pt~eE~~~p~lwRfw~~lP~~G~i~IF~rSwY~~~l  103 (230)
T TIGR03707        29 GARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVA--LPK---PSDRERTQWYFQRYVQHLPAAGEIVLFDRSWYNRAG  103 (230)
T ss_pred             CCCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEe--CCC---CCHHHHcChHHHHHHHhCCCCCeEEEEeCchhhhHH
Confidence            469999999999999999999999988754444432  100   0000    1223333444 5666677777433331 


Q ss_pred             ------------------HHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 006654           92 ------------------QRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEG  130 (636)
Q Consensus        92 ------------------~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~  130 (636)
                                        +-..|.+. ...|+.+.-++|.++.++..+|+.+|...+.
T Consensus       104 v~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflhIsk~eQ~kRl~~r~~~p~  161 (230)
T TIGR03707       104 VERVMGFCTDEEYEEFLRQVPEFERMLVRDGIHLFKYWLSVSREEQLRRFKARIDDPL  161 (230)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCc
Confidence                              11234455 6789988889999999999999999987654

Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.51  E-value=0.23  Score=57.68  Aligned_cols=29  Identities=14%  Similarity=0.230  Sum_probs=25.2

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ...+..++|.|+||+||||+|+.+++.+.
T Consensus        35 ~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~   63 (585)
T PRK14950         35 GRVAHAYLFTGPRGVGKTSTARILAKAVN   63 (585)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence            34567789999999999999999998875

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.49  E-value=0.27  Score=57.36  Aligned_cols=29  Identities=21%  Similarity=0.180  Sum_probs=25.3

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ..-+.-+++.|+||+||||+|+.+++.+.
T Consensus        35 ~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~   63 (620)
T PRK14954         35 DRVGHGYIFSGLRGVGKTTAARVFAKAVN   63 (620)
T ss_pred             CCCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence            34566789999999999999999999876

>TIGR02012 tigrfam_recA protein RecA

Probab=94.46  E-value=0.1  Score=55.96  Aligned_cols=35  Identities=23%  Similarity=0.301  Sum_probs=26.4

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeeh
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ   53 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~   53 (636)
                      +..++.+.|+|||||||||-+++...   +..+..|+.
T Consensus        54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~   91 (321)
T TIGR02012        54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDA   91 (321)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcc
Confidence            45789999999999999999876543   334555654

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=94.45  E-value=0.2  Score=47.46  Aligned_cols=80  Identities=24%  Similarity=0.250  Sum_probs=46.3

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCC--CeEEeehhhhc--------CCC-----CCc-HHHHHHHHHHHHhCCCeEEE
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSAR--PWARICQDTIN--------KGK-----SGT-KVQCLTSASSALKKGKSVFL   83 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~--~~~~Is~D~ir--------~~~-----~~~-~~~~~~~~~~~L~~G~~VII   83 (636)
                      ..++.++|++|||||||.+.++.....  ..+.++...+.        ...     ... ..+....+...+.....+|+
T Consensus        25 g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~il  104 (157)
T cd00267          25 GEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLLLL  104 (157)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            368899999999999999999865431  12223221111        000     001 12233455555566677888


Q ss_pred             eC--CCCCHHHHHHHHHh
Q 006654           84 DR--CNLEREQRTDFVKL   99 (636)
Q Consensus        84 D~--tn~~~~~R~~l~~l   99 (636)
                      |-  ..+....+..+.++
T Consensus       105 DEp~~~lD~~~~~~l~~~  122 (157)
T cd00267         105 DEPTSGLDPASRERLLEL  122 (157)
T ss_pred             eCCCcCCCHHHHHHHHHH
Confidence            88  34666666666555

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=94.43  E-value=0.098  Score=54.33  Aligned_cols=81  Identities=15%  Similarity=0.161  Sum_probs=49.9

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCCCCcHH--HHHHHHHHHHhCCCeEEEeCC---CCCH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTKV--QCLTSASSALKKGKSVFLDRC---NLER   90 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~~~~~~--~~~~~~~~~L~~G~~VIID~t---n~~~   90 (636)
                      .+.-+++.|+||+|||.+|-+++.++   |..+..+..-++.......+.  .....+.+.+..-...|||..   +.+.
T Consensus       104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~~~~~  183 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYEPFSQ  183 (254)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhhcCCEEEEecccCccCCH
Confidence            45568999999999999999987654   333444443222211111111  123444555777778999994   4566


Q ss_pred             HHHHHHHHh
Q 006654           91 EQRTDFVKL   99 (636)
Q Consensus        91 ~~R~~l~~l   99 (636)
                      +.+..|..+
T Consensus       184 ~~~~~~~q~  192 (254)
T COG1484         184 EEADLLFQL  192 (254)
T ss_pred             HHHHHHHHH
Confidence            777777665

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]

Probab=94.40  E-value=0.16  Score=53.88  Aligned_cols=107  Identities=16%  Similarity=0.220  Sum_probs=56.5

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCC------CeEEeehhhhcCCCCCcHHHH--HHHHHHHH--hCC------CeEEE
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSAR------PWARICQDTINKGKSGTKVQC--LTSASSAL--KKG------KSVFL   83 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~------~~~~Is~D~ir~~~~~~~~~~--~~~~~~~L--~~G------~~VII   83 (636)
                      -..+++-||||.|||+.|+.+++.+..      ++..+|..+.+ +...-+...  +....-..  ..|      +.+|+
T Consensus        57 lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSder-Gisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIl  135 (346)
T KOG0989|consen   57 LPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDER-GISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIIL  135 (346)
T ss_pred             CceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccc-cccchhhhhcCHHHHhhccccccCCCCCcceEEEE
Confidence            345789999999999999999988752      11222322221 110011111  11111111  011      45899


Q ss_pred             eCCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           84 DRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        84 D~tn-~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      |.+. ++.+.+..+.+. ..+....+++.+.-..+.+..=+..|-.
T Consensus       136 DEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~  181 (346)
T KOG0989|consen  136 DECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQ  181 (346)
T ss_pred             echhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHH
Confidence            9874 666666666666 5544444555555455555554555543

>TIGR00750 lao LAO/AO transport system ATPase

Probab=94.40  E-value=0.049  Score=57.78  Aligned_cols=39  Identities=31%  Similarity=0.275  Sum_probs=29.2

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhh
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDT   55 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~   55 (636)
                      ...+.+|.++|+|||||||++..++..+   +..+..++.|.
T Consensus        31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~   72 (300)
T TIGR00750        31 TGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDP   72 (300)
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence            3467888999999999999999987654   33455566553

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=94.40  E-value=0.23  Score=52.30  Aligned_cols=28  Identities=21%  Similarity=0.323  Sum_probs=24.8

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ..|.-+++.||||+||||.|..+++.+.
T Consensus        22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~   49 (325)
T COG0470          22 RLPHALLFYGPPGVGKTTAALALAKELL   49 (325)
T ss_pred             CCCceeeeeCCCCCCHHHHHHHHHHHHh
Confidence            4566789999999999999999998875

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=94.37  E-value=0.042  Score=59.11  Aligned_cols=29  Identities=21%  Similarity=0.249  Sum_probs=25.4

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCe
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPW   48 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~   48 (636)
                      ...|+++|+|||||||+++.|+..++.++
T Consensus       162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~  190 (325)
T TIGR01526       162 VKTVAILGGESTGKSTLVNKLAAVFNTTS  190 (325)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhCCCE
Confidence            34789999999999999999999988554

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=94.36  E-value=0.033  Score=54.24  Aligned_cols=22  Identities=32%  Similarity=0.715  Sum_probs=19.5

Q ss_pred             EEEEccCCCcHHHHHHHHHHHc
Q 006654           23 VIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      |+|.|.||+||||+.+++++.+
T Consensus         2 i~iTG~pG~GKTTll~k~i~~l   23 (168)
T PF03266_consen    2 IFITGPPGVGKTTLLKKVIEEL   23 (168)
T ss_dssp             EEEES-TTSSHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHh
Confidence            7899999999999999998876

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=94.35  E-value=0.27  Score=52.31  Aligned_cols=112  Identities=18%  Similarity=0.152  Sum_probs=62.9

Q ss_pred             cccCccEEEEEEccCCCcHHHHHHHHHHHcCCCe-EEeehhhh--c--CCCCCcHHHHHHHHHHHH------hCCCeEEE
Q 006654           15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPW-ARICQDTI--N--KGKSGTKVQCLTSASSAL------KKGKSVFL   83 (636)
Q Consensus        15 ~~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~-~~Is~D~i--r--~~~~~~~~~~~~~~~~~L------~~G~~VII   83 (636)
                      ..+..+..+++.|++|+||+|+|+.+++.+-+.. .....|.+  .  ++.....+++...+ +.+      ...+-+||
T Consensus        21 ~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~-~~~~~~p~~~~~kv~iI   99 (313)
T PRK05564         21 IKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNII-EEVNKKPYEGDKKVIII   99 (313)
T ss_pred             HcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHH-HHHhcCcccCCceEEEE
Confidence            3456678899999999999999999998753110 00011211  0  12212223322222 222      12245788


Q ss_pred             eC-CCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           84 DR-CNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        84 D~-tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      |. -.++......+++. .+......+|.+.-..+.+..-+..|..
T Consensus       100 ~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~  145 (313)
T PRK05564        100 YNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQ  145 (313)
T ss_pred             echhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhce
Confidence            87 45677677777777 6554444444444445556566666665

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=94.35  E-value=0.2  Score=52.57  Aligned_cols=39  Identities=18%  Similarity=0.243  Sum_probs=29.3

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir   57 (636)
                      ++..++++|++|+||||+++.++..+   +.....++.|..+
T Consensus        74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r  115 (270)
T PRK06731         74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR  115 (270)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            44689999999999999999988664   2234556766553

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=94.34  E-value=0.03  Score=64.08  Aligned_cols=28  Identities=25%  Similarity=0.430  Sum_probs=24.5

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      .+..+++|+||||+||||||+.|++.+.
T Consensus       101 ~~~~IL~LvGPpG~GKSsLa~~la~~le  128 (644)
T PRK15455        101 EKKQILYLLGPVGGGKSSLAERLKSLME  128 (644)
T ss_pred             CCCceEEEecCCCCCchHHHHHHHHHHH
Confidence            3556899999999999999999998765

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.34  E-value=0.042  Score=58.31  Aligned_cols=55  Identities=20%  Similarity=0.349  Sum_probs=39.3

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC-CCCCcHHHHHHHHHHHHh
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-GKSGTKVQCLTSASSALK   76 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~-~~~~~~~~~~~~~~~~L~   76 (636)
                      ..-|+|+||.|||||-+|+-|++.++.||..-|.-.+-+ +..|..  +...+.+.|.
T Consensus        97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGED--VENillkLlq  152 (408)
T COG1219          97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGED--VENILLKLLQ  152 (408)
T ss_pred             eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchh--HHHHHHHHHH
Confidence            356899999999999999999999998887777655543 333433  2244444444

>TIGR00101 ureG urease accessory protein UreG

Probab=94.33  E-value=0.04  Score=55.00  Aligned_cols=26  Identities=27%  Similarity=0.445  Sum_probs=22.8

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      |..|.++|++||||||+.+.+...+.
T Consensus         1 ~~~i~i~G~~GsGKTTll~~l~~~l~   26 (199)
T TIGR00101         1 PLKIGVAGPVGSGKTALIEALTRALR   26 (199)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhhC
Confidence            56789999999999999999988754

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []

Probab=94.32  E-value=0.027  Score=49.43  Aligned_cols=38  Identities=18%  Similarity=0.208  Sum_probs=31.8

Q ss_pred             CCeEEEcCcEEEeccCCCCCcccccccCCCCccchhccc
Q 006654          576 DDLLEISDDVVVLNDLYPKVHPSDNLPPGTLLCICLSSI  614 (636)
Q Consensus       576 ~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~~~~~~~~~~  614 (636)
                      ..++|.||+++++-|.+|.+.-|+||+||. -..+|.|+
T Consensus         6 ~~vv~e~~~~~~~~~~~p~~~gh~LVipk~-H~~~l~dl   43 (98)
T PF01230_consen    6 ARVVYEDDHFVAFLDIFPISPGHLLVIPKR-HVESLSDL   43 (98)
T ss_dssp             CEEEEE-SSEEEEEESSTSSTTEEEEEESS-TGSSGGGS
T ss_pred             eeEEEECCCEEEEEcCCCCCCeEEEEEecc-cccchhcC
Confidence            459999999999999999999999999998 55555554

Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=94.31  E-value=0.043  Score=57.11  Aligned_cols=39  Identities=28%  Similarity=0.438  Sum_probs=28.9

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehh
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQD   54 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D   54 (636)
                      ...+|.+|+++|+.|||||||.++|...+.   .+-..||.|
T Consensus        15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLD   56 (366)
T KOG1532|consen   15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLD   56 (366)
T ss_pred             cccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCC
Confidence            455788999999999999999999875543   222346654

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=94.28  E-value=0.038  Score=49.23  Aligned_cols=22  Identities=18%  Similarity=0.563  Sum_probs=19.9

Q ss_pred             EEEEccCCCcHHHHHHHHHHHc
Q 006654           23 VIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      |+++|.+|||||||.+.|....
T Consensus         2 I~V~G~~g~GKTsLi~~l~~~~   23 (119)
T PF08477_consen    2 IVVLGDSGVGKTSLIRRLCGGE   23 (119)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEECcCCCCHHHHHHHHhcCC
Confidence            7899999999999999998654

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=94.25  E-value=0.28  Score=57.92  Aligned_cols=30  Identities=13%  Similarity=0.216  Sum_probs=26.0

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ....+..+++.||+|+||||+|+.+++.+.
T Consensus        36 ~~rl~HAYLF~GP~GtGKTt~AriLAk~Ln   65 (725)
T PRK07133         36 SNKISHAYLFSGPRGTGKTSVAKIFANALN   65 (725)
T ss_pred             cCCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence            445577889999999999999999998875

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=94.25  E-value=0.039  Score=62.97  Aligned_cols=29  Identities=17%  Similarity=0.339  Sum_probs=25.8

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCC
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR   46 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~   46 (636)
                      ..+.+++|.|||||||||..+.|+++++.
T Consensus        43 ~~~~iLlLtGP~G~GKtttv~~La~elg~   71 (519)
T PF03215_consen   43 SPKRILLLTGPSGCGKTTTVKVLAKELGF   71 (519)
T ss_pred             CCcceEEEECCCCCCHHHHHHHHHHHhCC
Confidence            34569999999999999999999999983

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=94.23  E-value=0.37  Score=55.71  Aligned_cols=112  Identities=14%  Similarity=0.136  Sum_probs=59.4

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcCCC-------e--EEee--------hhhhc-CCCC-CcHHHHHHHHHHH--
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARP-------W--ARIC--------QDTIN-KGKS-GTKVQCLTSASSA--   74 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~-------~--~~Is--------~D~ir-~~~~-~~~~~~~~~~~~~--   74 (636)
                      ....+..+++.|+||.||||+|+.+++.+...       +  +..+        .|.+. ++.. ...+.+.......  
T Consensus        34 ~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~  113 (563)
T PRK06647         34 SNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMF  113 (563)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHh
Confidence            34457789999999999999999999987521       0  0000        11111 1111 1112222221111  


Q ss_pred             ---HhCCCeEEEeCCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           75 ---LKKGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        75 ---L~~G~~VIID~tn-~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                         ....+-+|||... ++......+++. .+....+.+|+......-+...+..|..
T Consensus       114 ~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~  171 (563)
T PRK06647        114 PPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQ  171 (563)
T ss_pred             chhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhce
Confidence               1233468888854 455555666666 5544444444444444455556666654

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=94.23  E-value=0.043  Score=54.80  Aligned_cols=29  Identities=28%  Similarity=0.530  Sum_probs=25.3

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      .+.+.+|.++|++|||||||.+++++.++
T Consensus        19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~   47 (207)
T TIGR00073        19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLK   47 (207)
T ss_pred             hcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            34688899999999999999999998754

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=94.22  E-value=0.034  Score=52.75  Aligned_cols=22  Identities=27%  Similarity=0.628  Sum_probs=19.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      .|+|+|+.|||||||+++|...
T Consensus         3 rimliG~~g~GKTTL~q~L~~~   24 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGE   24 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCC
Confidence            4899999999999999999754

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PTZ00202 tuzin; Provisional

Probab=94.21  E-value=0.26  Score=55.06  Aligned_cols=34  Identities=26%  Similarity=0.515  Sum_probs=27.6

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEee
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARIC   52 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is   52 (636)
                      .|.+++|+|++|+||||+++.+....+.....+|
T Consensus       285 ~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vN  318 (550)
T PTZ00202        285 HPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVD  318 (550)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhcCCceEEEEC
Confidence            5679999999999999999999988774433344

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=94.18  E-value=0.28  Score=56.19  Aligned_cols=30  Identities=20%  Similarity=0.244  Sum_probs=25.9

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ...-+..+++.|+||+||||+|+.+++.+.
T Consensus        32 ~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~   61 (535)
T PRK08451         32 NNRLAHAYLFSGLRGSGKTSSARIFARALV   61 (535)
T ss_pred             cCCCCeeEEEECCCCCcHHHHHHHHHHHhc
Confidence            445677889999999999999999998863

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=94.14  E-value=0.046  Score=52.30  Aligned_cols=33  Identities=24%  Similarity=0.488  Sum_probs=25.8

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i   56 (636)
                      .=++++|++|+||||+|..|.++ +  +..++.|..
T Consensus        15 ~gvLi~G~sG~GKStlal~L~~~-g--~~lvaDD~v   47 (149)
T cd01918          15 IGVLITGPSGIGKSELALELIKR-G--HRLVADDRV   47 (149)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc-C--CeEEECCEE
Confidence            34789999999999999999876 2  455665554

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.14  E-value=0.29  Score=57.23  Aligned_cols=26  Identities=19%  Similarity=0.331  Sum_probs=23.1

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      +.-+++.|+||+||||+|+.+++.+.
T Consensus        38 ~~a~Lf~Gp~G~GKttlA~~lAk~L~   63 (620)
T PRK14948         38 APAYLFTGPRGTGKTSSARILAKSLN   63 (620)
T ss_pred             CceEEEECCCCCChHHHHHHHHHHhc
Confidence            44578999999999999999999876

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=94.14  E-value=0.62  Score=50.26  Aligned_cols=123  Identities=13%  Similarity=0.152  Sum_probs=70.1

Q ss_pred             ccchhhhhhhccccCccEEEEEEccCCCcHHHHHHHHHHHcCCCe---------EEee--------hhhhc--CCC---C
Q 006654            4 DIDDTCKAKDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPW---------ARIC--------QDTIN--KGK---S   61 (636)
Q Consensus         4 ~~~~~~~~~~~~~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~---------~~Is--------~D~ir--~~~---~   61 (636)
                      -|.+..|......+..+.-+++.|++|.||+|+|+.+++.+.+..         ++.+        .|.+.  .+.   .
T Consensus         6 PWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~   85 (328)
T PRK05707          6 PWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKT   85 (328)
T ss_pred             CCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCC
Confidence            345555555555566788899999999999999999998864210         0000        12211  111   1


Q ss_pred             CcHHHHHHHHHHHHh-----C-CCeEEEeCCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           62 GTKVQCLTSASSALK-----K-GKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        62 ~~~~~~~~~~~~~L~-----~-G~~VIID~tn-~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      ..-+++ +.+.+.+.     . .+.+|||... ++......+++. .+......+|.+.-..+.+..-+..|-.
T Consensus        86 i~id~i-R~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~  158 (328)
T PRK05707         86 IKVDQV-RELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQ  158 (328)
T ss_pred             CCHHHH-HHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhce
Confidence            112232 22333332     1 2357888754 677777788888 6655445555555455555555555554

>COG4240 Predicted kinase [General function prediction only]

Probab=94.14  E-value=0.11  Score=52.93  Aligned_cols=68  Identities=28%  Similarity=0.356  Sum_probs=45.5

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHc----CCCeEEeehhhhc-------------------CCCCCcHH-HHHHHHHH
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTIN-------------------KGKSGTKV-QCLTSASS   73 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~----~~~~~~Is~D~ir-------------------~~~~~~~~-~~~~~~~~   73 (636)
                      ..|-++.++||-||||||++-.|...+    +-+...++.|++.                   .+..|+.+ .+...+.+
T Consensus        48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVLn  127 (300)
T COG4240          48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVLN  127 (300)
T ss_pred             CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHHH
Confidence            458999999999999999998865433    2234556777763                   12334433 45677788


Q ss_pred             HHhCCCe-EEEeC
Q 006654           74 ALKKGKS-VFLDR   85 (636)
Q Consensus        74 ~L~~G~~-VIID~   85 (636)
                      ++.+|.. |++-.
T Consensus       128 ai~~g~~~V~lPr  140 (300)
T COG4240         128 AIARGGPTVPLPR  140 (300)
T ss_pred             HHhcCCCCccccc
Confidence            8877764 55543

>CHL00206 ycf2 Ycf2; Provisional

Probab=94.11  E-value=0.049  Score=69.21  Aligned_cols=41  Identities=15%  Similarity=0.289  Sum_probs=35.4

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK   58 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~   58 (636)
                      ..|+=|+|+||||+|||.+|+++|.+.+.|+..|+...+..
T Consensus      1628 ~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206       1628 SPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence            34667899999999999999999999999998888766653

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.11  E-value=0.39  Score=55.75  Aligned_cols=111  Identities=14%  Similarity=0.182  Sum_probs=60.5

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcCCCe---------EEee--------hhhhc-CCCC-CcHHHHHHHHHHHH-
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPW---------ARIC--------QDTIN-KGKS-GTKVQCLTSASSAL-   75 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~---------~~Is--------~D~ir-~~~~-~~~~~~~~~~~~~L-   75 (636)
                      ....+..+++.|++|+||||+|+.+++.+.+.-         +..|        .|.+. ++.. ..-++ ++.+.+.+ 
T Consensus        34 ~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s~~~v~~-ir~l~~~~~  112 (576)
T PRK14965         34 TGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGASNTGVDD-IRELRENVK  112 (576)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccCccCHHH-HHHHHHHHH
Confidence            344577889999999999999999998865210         0011        11111 1110 01111 12222222 


Q ss_pred             -----hCCCeEEEeCCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           76 -----KKGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        76 -----~~G~~VIID~tn-~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                           ...+.+|||... ++......+++. .+....+.+|+.....+-+..-+..|..
T Consensus       113 ~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~  171 (576)
T PRK14965        113 YLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQ  171 (576)
T ss_pred             hccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhh
Confidence                 223468999854 555555666666 5544444555555555556666666654

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=94.10  E-value=0.41  Score=46.18  Aligned_cols=26  Identities=38%  Similarity=0.485  Sum_probs=22.6

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +..++.++|++|||||||.+.++-..
T Consensus        27 ~G~~~~l~G~nGsGKstLl~~i~G~~   52 (171)
T cd03228          27 PGEKVAIVGPSGSGKSTLLKLLLRLY   52 (171)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            45688999999999999999998654

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.10  E-value=0.36  Score=56.16  Aligned_cols=27  Identities=19%  Similarity=0.283  Sum_probs=24.2

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      -+..++|.|+||+||||+|+.|++.+.
T Consensus        37 i~ha~Lf~GPpG~GKTtiArilAk~L~   63 (624)
T PRK14959         37 VAPAYLFSGTRGVGKTTIARIFAKALN   63 (624)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhcc
Confidence            356789999999999999999999875

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=94.09  E-value=0.057  Score=52.24  Aligned_cols=31  Identities=26%  Similarity=0.555  Sum_probs=23.5

Q ss_pred             EEEEccCCCcHHHHHHHHHHH---cCCCeEEeeh
Q 006654           23 VIMVGAPGSGKSTFCEHVMRS---SARPWARICQ   53 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~---~~~~~~~Is~   53 (636)
                      +++.|+||+|||+++.+++..   .+.++..++.
T Consensus         2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~   35 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL   35 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence            689999999999999998654   2444555554

A related protein is found in archaea.

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=94.05  E-value=0.087  Score=53.78  Aligned_cols=25  Identities=20%  Similarity=0.408  Sum_probs=21.0

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      +..++++.|+||+||||+|.+++..
T Consensus        23 ~g~~~~i~G~~G~GKTtl~~~~~~~   47 (230)
T PRK08533         23 AGSLILIEGDESTGKSILSQRLAYG   47 (230)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4568999999999999999776653

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=94.04  E-value=0.32  Score=54.76  Aligned_cols=29  Identities=17%  Similarity=0.298  Sum_probs=25.0

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ..-+..+++.|+||+||||+|+.+++.+.
T Consensus        36 ~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~   64 (451)
T PRK06305         36 NRAAHAYLFSGIRGTGKTTLARIFAKALN   64 (451)
T ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            34567789999999999999999998864

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=94.03  E-value=0.1  Score=58.65  Aligned_cols=64  Identities=30%  Similarity=0.480  Sum_probs=42.4

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEee-h-hhhcCCCCCcHHHH---HHHHHHHHhCCCe-EEEeC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARIC-Q-DTINKGKSGTKVQC---LTSASSALKKGKS-VFLDR   85 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is-~-D~ir~~~~~~~~~~---~~~~~~~L~~G~~-VIID~   85 (636)
                      .-.-++|.||||||||+||.+++.....||+.|. . |++.  .. ....|   .+....+.++.-+ +|+|.
T Consensus       537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG--~s-EsaKc~~i~k~F~DAYkS~lsiivvDd  606 (744)
T KOG0741|consen  537 PLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIG--LS-ESAKCAHIKKIFEDAYKSPLSIIVVDD  606 (744)
T ss_pred             cceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccC--cc-HHHHHHHHHHHHHHhhcCcceEEEEcc
Confidence            4456899999999999999999999887776654 3 3331  11 12222   2455555666555 56666

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=94.01  E-value=0.037  Score=50.87  Aligned_cols=26  Identities=35%  Similarity=0.425  Sum_probs=22.1

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +..++.++|++|||||||.+.|+...
T Consensus        10 ~g~~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   10 PGEIVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEEccCCCccccceeeecccc
Confidence            34678999999999999999987654

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=93.98  E-value=0.054  Score=55.83  Aligned_cols=29  Identities=21%  Similarity=0.413  Sum_probs=24.6

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCC
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR   46 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~   46 (636)
                      ..|-.++++|++||||||+...|...+..
T Consensus        11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~   39 (241)
T PF04665_consen   11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRH   39 (241)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhhcc
Confidence            45667899999999999999999877653

This is thought to be an ATPase involved in viral DNA packaging [].

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=93.98  E-value=0.044  Score=49.02  Aligned_cols=21  Identities=33%  Similarity=0.588  Sum_probs=19.2

Q ss_pred             EEEEccCCCcHHHHHHHHHHH
Q 006654           23 VIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~   43 (636)
                      |+++|.||+|||||.+.|...
T Consensus         2 V~iiG~~~~GKSTlin~l~~~   22 (116)
T PF01926_consen    2 VAIIGRPNVGKSTLINALTGK   22 (116)
T ss_dssp             EEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhcc
Confidence            789999999999999999853

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK00089 era GTPase Era; Reviewed

Probab=93.94  E-value=0.32  Score=51.03  Aligned_cols=24  Identities=38%  Similarity=0.555  Sum_probs=21.0

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMR   42 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak   42 (636)
                      +.-.|.++|.||||||||...|..
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g   27 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVG   27 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhC
Confidence            456799999999999999999874

>cd04163 Era Era subfamily

Probab=93.93  E-value=0.049  Score=50.31  Aligned_cols=24  Identities=33%  Similarity=0.513  Sum_probs=20.6

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ...|+++|+|||||||+...+...
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~   26 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQ   26 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            346899999999999999998753

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=93.93  E-value=0.086  Score=58.91  Aligned_cols=26  Identities=23%  Similarity=0.402  Sum_probs=22.4

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ..-|++.|+||+||||+|++++..+.
T Consensus       194 ~~~iil~GppGtGKT~lA~~la~~l~  219 (459)
T PRK11331        194 KKNIILQGPPGVGKTFVARRLAYLLT  219 (459)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhc
Confidence            34578899999999999999998764

>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family

Probab=93.93  E-value=0.27  Score=51.37  Aligned_cols=108  Identities=16%  Similarity=0.232  Sum_probs=72.0

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHH----HHHHHHHHHH-hCCCeEEEeCCCCCH--
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKV----QCLTSASSAL-KKGKSVFLDRCNLER--   90 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~----~~~~~~~~~L-~~G~~VIID~tn~~~--   90 (636)
                      ..|.||++-|.-||||+...+.|.+.+..+..++..-  .   ..+..    ..+-..-+.| ..|.-.|.|+.-+..  
T Consensus        54 ~~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~--~---~Pt~eE~~~p~lWRfw~~lP~~G~i~IF~RSWY~~vl  128 (264)
T TIGR03709        54 RRSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSF--K---APSAEELDHDFLWRIHKALPERGEIGIFNRSHYEDVL  128 (264)
T ss_pred             CCcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeC--C---CCCHHHHcCchHHHHHHhCCCCCeEEEEcCccccchh
Confidence            3589999999999999999999999887544433321  0   00111    1122333444 567777777743332  


Q ss_pred             -----------HHH------HHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 006654           91 -----------EQR------TDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEG  130 (636)
Q Consensus        91 -----------~~R------~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~  130 (636)
                                 ..+      ..|.+. ...|+.+.-++|.++.++..+|+.+|...+.
T Consensus       129 ~~rv~g~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKffLhIsk~eQ~kRl~~r~~~p~  186 (264)
T TIGR03709       129 VVRVHGLIPKAIWERRYEDINDFERYLTENGTTILKFFLHISKEEQKKRFLARLDDPT  186 (264)
T ss_pred             hhhhcCCCCHHHHHHHHHHHHHHHHHHHHCCcEEEEEEEeCCHHHHHHHHHHHhcCCc
Confidence                       111      134444 6788988889999999999999999977543

Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.

>PF13479 AAA_24: AAA domain

Probab=93.92  E-value=0.1  Score=52.51  Aligned_cols=22  Identities=41%  Similarity=0.809  Sum_probs=19.7

Q ss_pred             ccEEEEEEccCCCcHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHV   40 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~L   40 (636)
                      .+..++|.|+||+||||+|..+
T Consensus         2 ~~~~~lIyG~~G~GKTt~a~~~   23 (213)
T PF13479_consen    2 KPIKILIYGPPGSGKTTLAASL   23 (213)
T ss_pred             CceEEEEECCCCCCHHHHHHhC
Confidence            4567899999999999999988

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=93.88  E-value=0.059  Score=53.53  Aligned_cols=37  Identities=22%  Similarity=0.410  Sum_probs=28.3

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehh
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD   54 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D   54 (636)
                      ++..++.+.|+||||||++|.+++...   +.....++.+
T Consensus        10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e   49 (209)
T TIGR02237        10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE   49 (209)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence            456899999999999999999987543   3345556654

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=93.87  E-value=0.42  Score=49.92  Aligned_cols=81  Identities=14%  Similarity=0.164  Sum_probs=47.3

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCC---eEEee-hhhhc-CCCC------CcHHHHHHHHHHHHhCCCeEEEeCCC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARP---WARIC-QDTIN-KGKS------GTKVQCLTSASSALKKGKSVFLDRCN   87 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~---~~~Is-~D~ir-~~~~------~~~~~~~~~~~~~L~~G~~VIID~tn   87 (636)
                      ...+++++|++||||||+.+.+......+   ...|. ..++. .+..      .........+..+|+.+-.+|+=+--
T Consensus        79 ~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEi  158 (264)
T cd01129          79 PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEI  158 (264)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccC
Confidence            34589999999999999999987765421   22221 11211 0100      00011335566677777777766656


Q ss_pred             CCHHHHHHHHHh
Q 006654           88 LEREQRTDFVKL   99 (636)
Q Consensus        88 ~~~~~R~~l~~l   99 (636)
                      ...+....+++.
T Consensus       159 R~~e~a~~~~~a  170 (264)
T cd01129         159 RDAETAEIAVQA  170 (264)
T ss_pred             CCHHHHHHHHHH
Confidence            666665555555

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=93.87  E-value=0.048  Score=55.55  Aligned_cols=37  Identities=22%  Similarity=0.316  Sum_probs=27.2

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir   57 (636)
                      ...+..++||.||||||+|..|+-.-.  |.+...+.+.
T Consensus        29 ~GEvhaiMGPNGsGKSTLa~~i~G~p~--Y~Vt~G~I~~   65 (251)
T COG0396          29 EGEVHAIMGPNGSGKSTLAYTIMGHPK--YEVTEGEILF   65 (251)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC--ceEecceEEE
Confidence            456889999999999999999986543  4444444443

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=93.86  E-value=0.041  Score=55.30  Aligned_cols=26  Identities=19%  Similarity=0.482  Sum_probs=20.1

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ..-++|.|+||+|||++|+.+...++
T Consensus        22 ~h~lLl~GppGtGKTmlA~~l~~lLP   47 (206)
T PF01078_consen   22 GHHLLLIGPPGTGKTMLARRLPSLLP   47 (206)
T ss_dssp             C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence            35689999999999999999998765

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>PRK04328 hypothetical protein; Provisional

Probab=93.81  E-value=0.12  Score=53.39  Aligned_cols=62  Identities=23%  Similarity=0.385  Sum_probs=38.7

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHH---cCCCeEEeehhhhcCCCCCcHHHHHHH-------HHHHHhCCCeEEEeCC
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQDTINKGKSGTKVQCLTS-------ASSALKKGKSVFLDRC   86 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~---~~~~~~~Is~D~ir~~~~~~~~~~~~~-------~~~~L~~G~~VIID~t   86 (636)
                      ++..++++.|+||||||+||.+++..   .+.+...++.+.       +..++.+.       +.+.+..|.-.|+|..
T Consensus        21 p~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee-------~~~~i~~~~~~~g~d~~~~~~~~~l~iid~~   92 (249)
T PRK04328         21 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE-------HPVQVRRNMRQFGWDVRKYEEEGKFAIVDAF   92 (249)
T ss_pred             cCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC-------CHHHHHHHHHHcCCCHHHHhhcCCEEEEecc
Confidence            35678999999999999999997754   233444555432       11111111       2344566777888874

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=93.80  E-value=0.4  Score=55.80  Aligned_cols=31  Identities=23%  Similarity=0.294  Sum_probs=26.5

Q ss_pred             cccCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        15 ~~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      .....+.-++|.|++|+||||+|+.+++.+.
T Consensus        41 ~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~   71 (598)
T PRK09111         41 ETGRIAQAFMLTGVRGVGKTTTARILARALN   71 (598)
T ss_pred             HcCCCCceEEEECCCCCCHHHHHHHHHHhhC
Confidence            3445577889999999999999999999875

>cd01394 radB RadB

Probab=93.80  E-value=0.061  Score=53.86  Aligned_cols=37  Identities=19%  Similarity=0.330  Sum_probs=28.3

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehh
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD   54 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D   54 (636)
                      ++..++.+.|+|||||||||-+++...   +.+...++.+
T Consensus        17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e   56 (218)
T cd01394          17 ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE   56 (218)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence            456789999999999999999998654   3345556654

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=93.78  E-value=0.058  Score=50.92  Aligned_cols=23  Identities=30%  Similarity=0.517  Sum_probs=20.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHc
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +|.++|+.+||||||++.|...+
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~l   24 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINEL   24 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999998665

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=93.78  E-value=0.066  Score=57.47  Aligned_cols=31  Identities=32%  Similarity=0.625  Sum_probs=27.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEee
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARIC   52 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is   52 (636)
                      -++|.|+||.|||++++.+++.++.++.+|.
T Consensus        45 ~vll~G~PG~gKT~la~~lA~~l~~~~~~i~   75 (329)
T COG0714          45 HVLLEGPPGVGKTLLARALARALGLPFVRIQ   75 (329)
T ss_pred             CEEEECCCCccHHHHHHHHHHHhCCCeEEEe
Confidence            4789999999999999999999997777765

>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork

Probab=93.77  E-value=0.29  Score=50.46  Aligned_cols=95  Identities=17%  Similarity=0.239  Sum_probs=50.9

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHc----CCCeEEeehhh----h----------------cCCCCCcH-HHHHHHHH
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDT----I----------------NKGKSGTK-VQCLTSAS   72 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~----~~~~~~Is~D~----i----------------r~~~~~~~-~~~~~~~~   72 (636)
                      .+..|++|.|.||+|||+|+-.++...    +.++..++.++    +                +.+..... ......+.
T Consensus        17 ~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s~v~~~~i~~g~l~~~e~~~~~~~~   96 (259)
T PF03796_consen   17 RPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLSGVPYNKIRSGDLSDEEFERLQAAA   96 (259)
T ss_dssp             -TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHHTSTHHHHHCCGCHHHHHHHHHHHH
T ss_pred             CcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhhcchhhhhhccccCHHHHHHHHHHH
Confidence            345799999999999999999987643    33455566421    1                11111111 11223444


Q ss_pred             HHHhCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEe
Q 006654           73 SALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLD  112 (636)
Q Consensus        73 ~~L~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld  112 (636)
                      ..|.....+|.|...++...-...+.. +.....+.+|++|
T Consensus        97 ~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~ID  137 (259)
T PF03796_consen   97 EKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFID  137 (259)
T ss_dssp             HHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEE
T ss_pred             HHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEec
Confidence            556665556666666676655544443 2221334455555

Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=93.76  E-value=0.53  Score=48.64  Aligned_cols=35  Identities=26%  Similarity=0.310  Sum_probs=26.3

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc----CCCeEEeeh
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQ   53 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~----~~~~~~Is~   53 (636)
                      ...++++.|+||+|||||+.+++...    +.....++.
T Consensus        29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~   67 (271)
T cd01122          29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL   67 (271)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence            45689999999999999999886542    434555554

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases

Probab=93.75  E-value=0.041  Score=55.22  Aligned_cols=21  Identities=38%  Similarity=0.855  Sum_probs=19.5

Q ss_pred             EEEEccCCCcHHHHHHHHHHH
Q 006654           23 VIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~   43 (636)
                      |++.|+|||||||+.++++..
T Consensus         1 ~vv~G~pGsGKSt~i~~~~~~   21 (234)
T PF01443_consen    1 IVVHGVPGSGKSTLIKKLLKD   21 (234)
T ss_pred             CEEEcCCCCCHHHHHHHHHHh
Confidence            578999999999999999987

Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=93.70  E-value=0.089  Score=60.57  Aligned_cols=41  Identities=24%  Similarity=0.403  Sum_probs=35.5

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK   58 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~   58 (636)
                      ..|+-++|+||||+|||.+|++.+-+.+.|+..++.-++-+
T Consensus       181 kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe  221 (596)
T COG0465         181 KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE  221 (596)
T ss_pred             ccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh
Confidence            46888999999999999999999999998988888655533

>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A

Probab=93.69  E-value=0.74  Score=45.04  Aligned_cols=33  Identities=15%  Similarity=0.289  Sum_probs=25.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i   56 (636)
                      +|-+.+..|||++|+|++|++++|  +..+|.+.+
T Consensus         1 IITIsr~~Gsgg~~Ia~~LA~~Lg--~~~~d~~ii   33 (179)
T PF13189_consen    1 IITISRQYGSGGREIAERLAEKLG--YPYYDREII   33 (179)
T ss_dssp             EEEEEE-TTSSHHHHHHHHHHHCT----EE-HHHH
T ss_pred             CEEECCCCCCChHHHHHHHHHHcC--CccCCHHHH
Confidence            577899999999999999999999  555776544

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=93.68  E-value=0.87  Score=48.54  Aligned_cols=125  Identities=15%  Similarity=0.092  Sum_probs=61.8

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCC--CeEEee-hhhhc--C-CC-------C--Cc-HHHHHHHHHHHHhCCCeEE
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSAR--PWARIC-QDTIN--K-GK-------S--GT-KVQCLTSASSALKKGKSVF   82 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~--~~~~Is-~D~ir--~-~~-------~--~~-~~~~~~~~~~~L~~G~~VI   82 (636)
                      ....++++|++||||||+.+.|...++.  ....|. ...+.  . .+       .  +. .....+.+...|+..-.+|
T Consensus       143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~i  222 (308)
T TIGR02788       143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRI  222 (308)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCeE
Confidence            3468999999999999999999877652  222232 11211  0 00       0  00 0112345555666655544


Q ss_pred             EeCCCCCHHHHHHHHHhCCCCCeEEEEEE-eCCHHHHHHHHHhcccccCCCCCCChHHHHHHHH
Q 006654           83 LDRCNLEREQRTDFVKLGGPEVDVHAVVL-DLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRML  145 (636)
Q Consensus        83 ID~tn~~~~~R~~l~~l~~~g~~v~vV~L-d~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~  145 (636)
                      +=+-....+....+..+. .|....+..+ ..+......|+........ .....+.+++.++.
T Consensus       223 i~gE~r~~e~~~~l~a~~-~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~-~~~g~~~~~~~~~i  284 (308)
T TIGR02788       223 ILGELRGDEAFDFIRAVN-TGHPGSITTLHAGSPEEAFEQLALMVKSSQ-AGLGLDFAYIVKLV  284 (308)
T ss_pred             EEeccCCHHHHHHHHHHh-cCCCeEEEEEeCCCHHHHHHHHHHHhhccc-cccCCCHHHHHHHH
Confidence            444455655443333332 2222112233 3445566778876643100 01245666664433

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>CHL00095 clpC Clp protease ATP binding subunit

Probab=93.67  E-value=0.12  Score=62.23  Aligned_cols=65  Identities=15%  Similarity=0.227  Sum_probs=39.5

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcC----------CCeEEeehhhhcC--CCCCcHHHHHHHHHHHHhC-CCe-EEEeC
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSA----------RPWARICQDTINK--GKSGTKVQCLTSASSALKK-GKS-VFLDR   85 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~----------~~~~~Is~D~ir~--~~~~~~~~~~~~~~~~L~~-G~~-VIID~   85 (636)
                      .-++|+|+||+|||++++.|+....          ..+..++...+..  ...+.+++.++.+.+.+.. +.. ++||.
T Consensus       201 ~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDE  279 (821)
T CHL00095        201 NNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDE  279 (821)
T ss_pred             CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEec
Confidence            3568999999999999999988752          2333455433332  2345555545444444433 333 56676

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=93.63  E-value=0.19  Score=54.88  Aligned_cols=27  Identities=30%  Similarity=0.570  Sum_probs=23.1

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      ..+..+++.|+||+||||+++.+++.+
T Consensus        53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l   79 (394)
T PRK00411         53 SRPLNVLIYGPPGTGKTTTVKKVFEEL   79 (394)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            345668899999999999999998765

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=93.59  E-value=0.75  Score=49.72  Aligned_cols=108  Identities=16%  Similarity=0.159  Sum_probs=58.0

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCC--eEEee-hhhhcC----C-------C--CCc-HHHHHHHHHHHHhCCCeE
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARP--WARIC-QDTINK----G-------K--SGT-KVQCLTSASSALKKGKSV   81 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~--~~~Is-~D~ir~----~-------~--~~~-~~~~~~~~~~~L~~G~~V   81 (636)
                      ....|+++|++||||||+.+.|....+..  ...|. ..++.-    +       .  .+. .....+.+..+|+..-.+
T Consensus       159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~  238 (332)
T PRK13900        159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDR  238 (332)
T ss_pred             cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCe
Confidence            35679999999999999999999877632  22221 112210    0       0  000 111335667777776666


Q ss_pred             EEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           82 FLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        82 IID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      |+=+.-+..+....+..+ ..+...+..+.-+ +.....+|+.....
T Consensus       239 IivGEiR~~ea~~~l~a~~tGh~G~~tTiHa~-s~~~ai~Rl~~~~~  284 (332)
T PRK13900        239 IIVGELRGAEAFSFLRAINTGHPGSISTLHAD-SPAMAIEQLKLMVM  284 (332)
T ss_pred             EEEEecCCHHHHHHHHHHHcCCCcEEEEEecC-CHHHHHHHHHHHHH
Confidence            655556666544433333 3332123333322 33456678775543

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=93.56  E-value=0.07  Score=53.64  Aligned_cols=35  Identities=29%  Similarity=0.541  Sum_probs=27.0

Q ss_pred             EEEEEEccCCCcHHHHHHHHHH---HcCCCeEEeehhh
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMR---SSARPWARICQDT   55 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak---~~~~~~~~Is~D~   55 (636)
                      .-.+++||.||||||++..+..   ..||.+..++.|-
T Consensus         4 ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDP   41 (273)
T KOG1534|consen    4 YAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDP   41 (273)
T ss_pred             eeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCH
Confidence            4568899999999999999764   4566666677654

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=93.52  E-value=0.15  Score=55.21  Aligned_cols=23  Identities=35%  Similarity=0.706  Sum_probs=20.8

Q ss_pred             EEEEccCCCcHHHHHHHHHHHcC
Q 006654           23 VIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ++|+||||+||||+|+.|+....
T Consensus       165 mIlWGppG~GKTtlArlia~tsk  187 (554)
T KOG2028|consen  165 MILWGPPGTGKTTLARLIASTSK  187 (554)
T ss_pred             eEEecCCCCchHHHHHHHHhhcC
Confidence            68999999999999999997765

>cd03114 ArgK-like The function of this protein family is unkown

Probab=93.51  E-value=0.075  Score=50.54  Aligned_cols=33  Identities=27%  Similarity=0.504  Sum_probs=25.6

Q ss_pred             EEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhh
Q 006654           23 VIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDT   55 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~   55 (636)
                      +.++|++||||||++..++..+   +.++.+++.|.
T Consensus         2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~   37 (148)
T cd03114           2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDP   37 (148)
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence            6789999999999999988654   34456666663

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase

Probab=93.49  E-value=0.64  Score=52.74  Aligned_cols=112  Identities=13%  Similarity=0.026  Sum_probs=72.3

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-cCCCCCcHHHHHHHHHHHH-hCCCeEEEeCCCCCH----
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NKGKSGTKVQCLTSASSAL-KKGKSVFLDRCNLER----   90 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r~~~~~~~~~~~~~~~~~L-~~G~~VIID~tn~~~----   90 (636)
                      ...|.+|+|-|.-||||++..+.|...+......+..-.. ....  .....+-..-..| ..|.-.|.|..-+..    
T Consensus        37 ~~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~~eE--~~~~flwRfw~~lP~~G~I~IFdRSWY~~vlve  114 (493)
T TIGR03708        37 AGFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPSDEE--RERPPMWRFWRRLPPKGKIGIFFGSWYTRPLIE  114 (493)
T ss_pred             cCCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCCCHHH--hcCcHHHHHHHhCCCCCeEEEEcCcccchhhHH
Confidence            4578999999999999999999999987743322221000 0000  0001223333344 567777777744333    


Q ss_pred             ---------HHH------HHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 006654           91 ---------EQR------TDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEG  130 (636)
Q Consensus        91 ---------~~R------~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~  130 (636)
                               ..+      ..|.++ ...|+.+.-++|.++.++..+|+.+|...+.
T Consensus       115 rv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~IlKffLhIsk~EQ~kRl~~r~~~P~  170 (493)
T TIGR03708       115 RLEGRIDEAKLDSHIEDINRFERMLADDGALILKFWLHLSKKQQKERLKKLEKDPE  170 (493)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCc
Confidence                     111      134444 6788988889999999999999999988654

Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).

>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]

Probab=93.49  E-value=1.1  Score=44.85  Aligned_cols=47  Identities=17%  Similarity=0.258  Sum_probs=34.6

Q ss_pred             CCCCCeE-EEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhc
Q 006654          100 GGPEVDV-HAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKE  149 (636)
Q Consensus       100 ~~~g~~v-~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe  149 (636)
                      ......+ -+|||.++.++|.+|+..|.+....   .+|-+.+..++...|
T Consensus       148 ~~~~v~~dgiIYLrasPetc~~Ri~~R~R~EE~---gipL~YLe~LH~~HE  195 (244)
T KOG4235|consen  148 RSMDVSLDGIIYLRASPETCYKRIYLRAREEEK---GIPLKYLEALHELHE  195 (244)
T ss_pred             hccccccceEEEeecChHHHHHHHHHHhhhhhc---CCcHHHHHHHHHHHH
Confidence            3333444 5899999999999999999986543   688777777665543

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=93.46  E-value=0.073  Score=51.40  Aligned_cols=25  Identities=32%  Similarity=0.519  Sum_probs=22.2

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      .++.++|++||||||++++|...+.
T Consensus         2 ~vi~i~G~~gsGKTTli~~L~~~l~   26 (159)
T cd03116           2 KVIGFVGYSGSGKTTLLEKLIPALS   26 (159)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4689999999999999999998764

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=93.46  E-value=0.086  Score=63.13  Aligned_cols=38  Identities=24%  Similarity=0.601  Sum_probs=31.6

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i   56 (636)
                      +..+++|+||||+||||+++.+++.++.++..++....
T Consensus       348 ~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~  385 (784)
T PRK10787        348 KGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGV  385 (784)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            34578999999999999999999999987877775443

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=93.41  E-value=0.059  Score=51.71  Aligned_cols=23  Identities=30%  Similarity=0.587  Sum_probs=20.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHc
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      ++.++|++||||||++.+|.+.+
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l   23 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKAL   23 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998764

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=93.41  E-value=0.34  Score=51.99  Aligned_cols=41  Identities=22%  Similarity=0.339  Sum_probs=31.8

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhc
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir   57 (636)
                      ..+|.+|+++|..|+||||-..+|+..+   |........|.+|
T Consensus       136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFR  179 (340)
T COG0552         136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFR  179 (340)
T ss_pred             CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHH
Confidence            4569999999999999999888888665   3344445568876

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=93.40  E-value=0.23  Score=55.79  Aligned_cols=104  Identities=11%  Similarity=0.145  Sum_probs=55.4

Q ss_pred             EEEEccCCCcHHHHHHHHHHHc-----CCCeEEeehhhhcCCCCCcHH---HHHHHHHHHHhCCCeEEEeCCCCC---HH
Q 006654           23 VIMVGAPGSGKSTFCEHVMRSS-----ARPWARICQDTINKGKSGTKV---QCLTSASSALKKGKSVFLDRCNLE---RE   91 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~~-----~~~~~~Is~D~ir~~~~~~~~---~~~~~~~~~L~~G~~VIID~tn~~---~~   91 (636)
                      ++|.|++|+|||+++++++..+     +..+..++.+.+.........   .......+.++.-..+|||...+-   ..
T Consensus       144 l~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~k~~  223 (450)
T PRK14087        144 LFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSYKEK  223 (450)
T ss_pred             eEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccCCHH
Confidence            7899999999999999987643     233445665544322111000   112334444555667899996432   23


Q ss_pred             HHHHHHHh----CCCCCeEEEEEEeCCHHHH---HHHHHhccc
Q 006654           92 QRTDFVKL----GGPEVDVHAVVLDLPAKLC---ISRSVKRIE  127 (636)
Q Consensus        92 ~R~~l~~l----~~~g~~v~vV~Ld~p~e~l---~~R~~~R~~  127 (636)
                      ....+..+    ...+.. .++.-+.+.+.+   .+|+..|-.
T Consensus       224 ~~e~lf~l~N~~~~~~k~-iIltsd~~P~~l~~l~~rL~SR~~  265 (450)
T PRK14087        224 TNEIFFTIFNNFIENDKQ-LFFSSDKSPELLNGFDNRLITRFN  265 (450)
T ss_pred             HHHHHHHHHHHHHHcCCc-EEEECCCCHHHHhhccHHHHHHHh
Confidence            33344333    233322 222324444433   467777754

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=93.40  E-value=0.67  Score=50.19  Aligned_cols=106  Identities=21%  Similarity=0.190  Sum_probs=55.6

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCC---eEEeehhhh-----------cCCCCCc-HHHHHHHHHHHHhCCCeEEEe
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARP---WARICQDTI-----------NKGKSGT-KVQCLTSASSALKKGKSVFLD   84 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~---~~~Is~D~i-----------r~~~~~~-~~~~~~~~~~~L~~G~~VIID   84 (636)
                      ..+++++|++||||||+.+.+......+   .+..-.|.+           .....+. .......+..+|+.+-.+|+=
T Consensus       122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~v  201 (343)
T TIGR01420       122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILI  201 (343)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEE
Confidence            4689999999999999999988765421   111111211           0101111 111234556667666555444


Q ss_pred             CCCCCHHHHHHHHHhCCCCCeEEEEEEe-CCHHHHHHHHHhcc
Q 006654           85 RCNLEREQRTDFVKLGGPEVDVHAVVLD-LPAKLCISRSVKRI  126 (636)
Q Consensus        85 ~tn~~~~~R~~l~~l~~~g~~v~vV~Ld-~p~e~l~~R~~~R~  126 (636)
                      +-....+.....+.....|..+. -.+. .+......|+..-.
T Consensus       202 gEird~~~~~~~l~aa~tGh~v~-~T~Ha~~~~~~~~Rl~~~~  243 (343)
T TIGR01420       202 GEMRDLETVELALTAAETGHLVF-GTLHTNSAAQTIERIIDVF  243 (343)
T ss_pred             eCCCCHHHHHHHHHHHHcCCcEE-EEEcCCCHHHHHHHHHHhc
Confidence            43556655554444423343332 2233 34455677877543

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length

Probab=93.40  E-value=0.073  Score=57.54  Aligned_cols=30  Identities=23%  Similarity=0.465  Sum_probs=25.9

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      .....++++|.||+|+||||+++.|.+.+.
T Consensus        84 ~~~~krIl~L~GPvg~GKSsl~~~Lk~~le  113 (358)
T PF08298_consen   84 LEERKRILLLLGPVGGGKSSLAELLKRGLE  113 (358)
T ss_pred             cCccceEEEEECCCCCCHHHHHHHHHHHhh
Confidence            445678899999999999999999988765

PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.

>COG3911 Predicted ATPase [General function prediction only]

Probab=93.39  E-value=0.071  Score=50.88  Aligned_cols=37  Identities=27%  Similarity=0.427  Sum_probs=27.3

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir   57 (636)
                      .+++|.|.||+|||||.++|++.--..+...-+|.+.
T Consensus        10 ~~fIltGgpGaGKTtLL~aLa~~Gfatvee~~r~ii~   46 (183)
T COG3911          10 KRFILTGGPGAGKTTLLAALARAGFATVEEAGRDIIA   46 (183)
T ss_pred             eEEEEeCCCCCcHHHHHHHHHHcCceeeccchhhHHH
Confidence            5789999999999999999987633223334456554

>PRK13764 ATPase; Provisional

Probab=93.39  E-value=0.36  Score=56.06  Aligned_cols=27  Identities=37%  Similarity=0.621  Sum_probs=23.5

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ....|+++|+|||||||+++.++..+.
T Consensus       256 ~~~~ILIsG~TGSGKTTll~AL~~~i~  282 (602)
T PRK13764        256 RAEGILIAGAPGAGKSTFAQALAEFYA  282 (602)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            356789999999999999999987765

>PRK10865 protein disaggregation chaperone; Provisional

Probab=93.37  E-value=0.16  Score=61.44  Aligned_cols=25  Identities=24%  Similarity=0.513  Sum_probs=22.0

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      ...++|+|+||+|||++++.|+...
T Consensus       199 ~~n~lL~G~pGvGKT~l~~~la~~i  223 (857)
T PRK10865        199 KNNPVLIGEPGVGKTAIVEGLAQRI  223 (857)
T ss_pred             cCceEEECCCCCCHHHHHHHHHHHh
Confidence            3357899999999999999999886

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=93.37  E-value=0.46  Score=54.91  Aligned_cols=29  Identities=14%  Similarity=0.213  Sum_probs=25.2

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ...+..+++.|++|+||||+|+.+++.+.
T Consensus        35 ~~~~hayLf~Gp~GtGKTt~Ak~lAkal~   63 (559)
T PRK05563         35 GKISHAYLFSGPRGTGKTSAAKIFAKAVN   63 (559)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            44577889999999999999999998865

>PRK09354 recA recombinase A; Provisional

Probab=93.35  E-value=0.29  Score=53.16  Aligned_cols=36  Identities=25%  Similarity=0.250  Sum_probs=26.9

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeeh
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ   53 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~   53 (636)
                      +...++.+.|+|||||||||-+++...   +..+..|+.
T Consensus        58 p~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~   96 (349)
T PRK09354         58 PRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDA   96 (349)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECC
Confidence            345789999999999999999987543   334555654

>PHA02624 large T antigen; Provisional

Probab=93.28  E-value=0.1  Score=60.12  Aligned_cols=30  Identities=20%  Similarity=0.252  Sum_probs=26.6

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      .-++...+++.||||||||||+..|++.++
T Consensus       427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~  456 (647)
T PHA02624        427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCG  456 (647)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            345677999999999999999999999994

>TIGR00436 era GTP-binding protein Era

Probab=93.27  E-value=0.43  Score=49.68  Aligned_cols=22  Identities=32%  Similarity=0.587  Sum_probs=19.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      .|.++|.||+|||||..+|...
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~   23 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQ   23 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999854

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=93.26  E-value=0.1  Score=55.13  Aligned_cols=35  Identities=34%  Similarity=0.487  Sum_probs=26.9

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcC--CCeEEee
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA--RPWARIC   52 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~--~~~~~Is   52 (636)
                      ..-.+|.|+|+||||||||.+++...+.  .....|.
T Consensus       102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~  138 (290)
T PRK10463        102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIE  138 (290)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEEC
Confidence            3467899999999999999999988753  2344554

>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=93.26  E-value=0.14  Score=56.63  Aligned_cols=32  Identities=22%  Similarity=0.298  Sum_probs=26.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQ   53 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~   53 (636)
                      =.+|-||||+||||+..++|..++...+.++.
T Consensus       237 GYLLYGPPGTGKSS~IaAmAn~L~ydIydLeL  268 (457)
T KOG0743|consen  237 GYLLYGPPGTGKSSFIAAMANYLNYDIYDLEL  268 (457)
T ss_pred             cceeeCCCCCCHHHHHHHHHhhcCCceEEeee
Confidence            47899999999999999999998844444544

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=93.23  E-value=0.069  Score=53.99  Aligned_cols=28  Identities=29%  Similarity=0.421  Sum_probs=23.2

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ++..+..|+||+|||||||-|.+-+...
T Consensus        31 ~~~~VTAlIGPSGcGKST~LR~lNRmnd   58 (253)
T COG1117          31 PKNKVTALIGPSGCGKSTLLRCLNRMND   58 (253)
T ss_pred             cCCceEEEECCCCcCHHHHHHHHHhhcc
Confidence            3457889999999999999999876543

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=93.20  E-value=0.084  Score=59.37  Aligned_cols=29  Identities=34%  Similarity=0.545  Sum_probs=24.9

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      .++|.++.++||||+|||||.+.|++++-
T Consensus        66 ~PPPfIvavvGPpGtGKsTLirSlVrr~t   94 (1077)
T COG5192          66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFT   94 (1077)
T ss_pred             CCCCeEEEeecCCCCChhHHHHHHHHHHH
Confidence            35677777999999999999999998864

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=93.18  E-value=0.073  Score=52.17  Aligned_cols=26  Identities=31%  Similarity=0.447  Sum_probs=22.0

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +..++.|+|++||||||+.+.++...
T Consensus        17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        17 RGEVLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44678999999999999999987543

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=93.18  E-value=0.81  Score=52.03  Aligned_cols=29  Identities=21%  Similarity=0.319  Sum_probs=25.0

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ...+..+++.|+||+||||+|+.+++.+.
T Consensus        35 ~~i~hayLf~Gp~G~GKTtlAr~lAk~L~   63 (486)
T PRK14953         35 QRVSHAYIFAGPRGTGKTTIARILAKVLN   63 (486)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            34567788999999999999999999865

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=93.17  E-value=0.071  Score=53.06  Aligned_cols=26  Identities=31%  Similarity=0.562  Sum_probs=22.4

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +..++.|+|++|||||||.+.++..+
T Consensus        26 ~G~~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          26 AGEFVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45678999999999999999998654

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=93.16  E-value=0.073  Score=53.22  Aligned_cols=26  Identities=38%  Similarity=0.456  Sum_probs=22.3

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +..++.|+|++|||||||.+.++...
T Consensus        29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          29 KGEFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence            44678999999999999999998654

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=93.14  E-value=1.1  Score=49.52  Aligned_cols=27  Identities=22%  Similarity=0.337  Sum_probs=24.0

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      .+.-+++.||||+||||+|+.+++.+.
T Consensus        35 l~ha~Lf~Gp~G~GKt~lA~~lA~~l~   61 (394)
T PRK07940         35 MTHAWLFTGPPGSGRSVAARAFAAALQ   61 (394)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            467789999999999999999998764

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=93.12  E-value=0.092  Score=42.76  Aligned_cols=22  Identities=32%  Similarity=0.560  Sum_probs=19.4

Q ss_pred             EEEEEEccCCCcHHHHHHHHHH
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMR   42 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak   42 (636)
                      .+.++.|+.||||||+-.++.-
T Consensus        24 ~~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   24 DVTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3789999999999999998764

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=93.11  E-value=0.078  Score=52.73  Aligned_cols=26  Identities=38%  Similarity=0.466  Sum_probs=22.5

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +..++.|+|++|||||||.+.++...
T Consensus        26 ~G~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          26 KGEFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            45689999999999999999998654

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	636
3zvn_A	416	The Structural Basis For Substrate Recognition By M		4e-06
3zvl_A	416	The Structural Basis For Substrate Recognition By M		4e-06
3u7e_B	381	Crystal Structure Of Mpnkp Catalytic Fragment (D170		5e-06
3zvm_A	416	The Structural Basis For Substrate Recognition By M		7e-06
1yj5_A	383	Molecular Architecture Of Mammalian Polynucleotide		1e-05
3u7g_A	379	Crystal Structure Of Mpnkp Catalytic Fragment (D170		1e-05
4gp6_A	171	Polynucleotide Kinase Length = 171		6e-04

>pdb|3ZVN|A Chain A, The Structural Basis For Substrate Recognition By Mammalian Polynucleotide Kinase 3' Phosphatase Length = 416

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSV 81
           +V+ VG PG+GKSTF +  + S+   +  + +DT+     G+  +C++S  +AL++GK V
Sbjct: 260 VVVAVGFPGAGKSTFIQEHLVSAG--YVHVNRDTL-----GSWQRCVSSCQAALRQGKRV 312
Query: 82  FLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141
            +D  N +   R  +++    +  V     +  A +  +R   R     +      + +V
Sbjct: 313 VIDNTNPDVPSRARYIQCAK-DAGVPCRCFNFXATIEQARHNNRFREMTDPSHAPVSDMV 371
Query: 142 NRMLQKK-ELPKLSEGFSRI 160
               +K+ E P L+EGF  I
Sbjct: 372 MFSYRKQFEPPTLAEGFLEI 391

>pdb|3ZVL|A Chain A, The Structural Basis For Substrate Recognition By Mammalian Polynucleotide Kinase 3' Phosphatase Length = 416

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSV 81
           +V+ VG PG+GKSTF +  + S+   +  + +DT+     G+  +C++S  +AL++GK V
Sbjct: 260 VVVAVGFPGAGKSTFIQEHLVSAG--YVHVNRDTL-----GSWQRCVSSCQAALRQGKRV 312
Query: 82  FLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141
            +D  N +   R  +++    +  V     +  A +  +R   R     +      + +V
Sbjct: 313 VIDNTNPDVPSRARYIQCAK-DAGVPCRCFNFXATIEQARHNNRFREMTDPSHAPVSDMV 371
Query: 142 NRMLQKK-ELPKLSEGFSRI 160
               +K+ E P L+EGF  I
Sbjct: 372 MFSYRKQFEPPTLAEGFLEI 391

>pdb|3U7E|B Chain B, Crystal Structure Of Mpnkp Catalytic Fragment (D170a) Length = 381

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 9/140 (6%)
Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSV 81
           +V+ VG PG+GKSTF +  + S+   +  + +DT+     G+  +C++S  +AL++GK V
Sbjct: 225 VVVAVGFPGAGKSTFIQEHLVSAG--YVHVNRDTL-----GSWQRCVSSCQAALRQGKRV 277
Query: 82  FLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141
            +D  N +   R  +++    +  V     +  A +  +R   R     +      +  V
Sbjct: 278 VIDNTNPDVPSRARYIQCAK-DAGVPCRCFNFXATIEQARHNNRFREXTDPSHAPVSDXV 336
Query: 142 NRMLQKK-ELPKLSEGFSRI 160
               +K+ E P L+EGF  I
Sbjct: 337 XFSYRKQFEPPTLAEGFLEI 356

>pdb|3ZVM|A Chain A, The Structural Basis For Substrate Recognition By Mammalian Polynucleotide Kinase 3' Phosphatase Length = 416

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSV 81
           +V+ VG PG+GKSTF +  + S+   +  + +DT+     G+  +C++S  +AL++GK V
Sbjct: 260 VVVAVGFPGAGKSTFIQEHLVSAG--YVHVNRDTL-----GSWQRCVSSCQAALRQGKRV 312
Query: 82  FLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141
            +D  N +   R  +++    +  V     +  A +  +R   R     +      + +V
Sbjct: 313 VIDNTNPDVPSRARYIQCAK-DAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMV 371
Query: 142 NRMLQKK-ELPKLSEGFSRI 160
               +K+ E P L+EGF  I
Sbjct: 372 MFSYRKQFEPPTLAEGFLEI 391

>pdb|1YJ5|A Chain A, Molecular Architecture Of Mammalian Polynucleotide Kinase, A Dna Repair Enzyme Length = 383

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 9/140 (6%)
Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSV 81
           +V+ VG PG+GKSTF +  + S+   +  + +DT+     G+  +C++S  +AL++GK V
Sbjct: 227 VVVAVGFPGAGKSTFIQEHLVSAG--YVHVNRDTL-----GSWQRCVSSCQAALRQGKRV 279
Query: 82  FLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141
            +D  N +   R  +++    +  V     +  A +  +R   R     +      +  V
Sbjct: 280 VIDNTNPDVPSRARYIQCAK-DAGVPCRCFNFCATIEQARHNNRFREXTDPSHAPVSDXV 338
Query: 142 NRMLQKK-ELPKLSEGFSRI 160
               +K+ E P L+EGF  I
Sbjct: 339 XFSYRKQFEPPTLAEGFLEI 358

>pdb|3U7G|A Chain A, Crystal Structure Of Mpnkp Catalytic Fragment (D170a) Bound To Single- Stranded Dna (Tcctap) Length = 379

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 9/140 (6%)
Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSV 81
           +V+ VG PG+GKSTF +  + S+   +  + +DT+     G+  +C++S  +AL++GK V
Sbjct: 223 VVVAVGFPGAGKSTFIQEHLVSAG--YVHVNRDTL-----GSWQRCVSSCQAALRQGKRV 275
Query: 82  FLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141
            +D  N +   R  +++    +  V     +  A +  +R   R     +      +  V
Sbjct: 276 VIDNTNPDVPSRARYIQCAK-DAGVPCRCFNFCATIEQARHNNRFREXTDPSHAPVSDXV 334
Query: 142 NRMLQKK-ELPKLSEGFSRI 160
               +K+ E P L+EGF  I
Sbjct: 335 XFSYRKQFEPPTLAEGFLEI 354

>pdb|4GP6|A Chain A, Polynucleotide Kinase Length = 171

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 13/118 (11%)
Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-----DTINKGKSGTKVQCLTS-ASSAL 75
           LV+++G+ GSGKSTF +   + +    +  C+     D  ++  +G     L    S  L
Sbjct: 11  LVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLVSDDENDQTVTGAAFDVLHYIVSKRL 70
Query: 76  KKGKSVFLDRCNLEREQRTDFVKLGGPEVDVH----AVVLDLPAKLCISRSVKRIEHE 129
           + GK   +D  N++   R   +++     D H    AVV +LP K+C  R+  R + +
Sbjct: 71  QLGKLTVVDATNVQESARKPLIEIAK---DYHCFPVAVVFNLPEKVCQERNKNRTDRQ 125

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	636
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	9e-23
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	5e-21
3ejf_A	176	Non-structural protein 3; IBV, coronavirus, X-doma	1e-18
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	3e-17
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	2e-16
3ejg_A	193	Non-structural protein 3; HCOV 229E, X-domain, mac	8e-16
3gqe_A	168	Non-structural protein 3; macro domain, X domain,	1e-15
2vri_A	174	Non-structural protein 3; RNA replication, nucleot	2e-15
3q71_A	221	Poly [ADP-ribose] polymerase 14; structural genomi	2e-15
1vhu_A	211	Hypothetical protein AF1521; structural genomics,	4e-15
3eti_A	168	X (ADRP) domain, macro domain of non-structural pr	2e-13
1spv_A	184	Putative polyprotein/phosphatase; structural genom	2e-13
2acf_A	182	Replicase polyprotein 1AB; ADRP domain, SARS NSP-3	3e-13
2dx6_A	159	Hypothetical protein TTHA0132; conserved hypotheti	4e-13
3gpg_A	168	NSP3, non-structural protein 3; macro domain, X do	4e-13
3q6z_A	214	Poly [ADP-ribose] polymerase 14; structural genomi	5e-13
3kh6_A	199	Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3	2e-12
2xd7_A	193	Core histone macro-H2A.2; chromosomal protein, nuc	3e-12
1yd9_A	193	Core histone macro-H2A.1; alpha-beta structure, A1	6e-12
2x47_A	235	Macro domain-containing protein 1; signaling prote	9e-12
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	7e-10
1njr_A	284	32.1 kDa protein in ADH3-RCA1 intergenic region; s	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	1e-07
3sp4_A	204	Aprataxin-like protein; HIT domain, zinc finger, D	1e-05
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	2e-05
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	5e-05
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	1e-04
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	8e-04

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* Length = 416

 Score =  100 bits (249), Expect = 9e-23
 Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 9/146 (6%)

Query: 19  KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKG 78
              +V+ VG PG+GKSTF +  + S    +  + +DT+     G+  +C++S  +AL++G
Sbjct: 257 NPEVVVAVGFPGAGKSTFIQEHLVS--AGYVHVNRDTL-----GSWQRCVSSCQAALRQG 309

Query: 79  KSVFLDRCNLEREQRTDFVKLG-GPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKA 137
           K V +D  N +   R  +++      V           +     +  R E         +
Sbjct: 310 KRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFR-EMTDPSHAPVS 368

Query: 138 AAVVNRMLQKKELPKLSEGFSRITLC 163
             V+    ++ E P L+EGF  I   
Sbjct: 369 DMVMFSYRKQFEPPTLAEGFLEILEI 394

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Length = 181

 Score = 89.8 bits (223), Expect = 5e-21
 Identities = 26/156 (16%), Positives = 46/156 (29%), Gaps = 27/156 (17%)

Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKV---------------- 65
           +++ +G PGSGKST+    +  +   +  I +D   +     +                 
Sbjct: 4   IILTIGCPGSGKSTWAREFIAKNPG-FYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTG 62

Query: 66  ---QCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPE-VDVHAVVLDLPAKLCISR 121
                  S        K V +   NL  E+R  +          V   V D+P    + R
Sbjct: 63  MQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKR 122

Query: 122 SVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGF 157
           + KR              V+  M +          +
Sbjct: 123 NSKRGTKAVP------IDVLRSMYKSMREYLGLPVY 152

>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A* Length = 176

 Score = 82.7 bits (205), Expect = 1e-18
 Identities = 32/140 (22%), Positives = 49/140 (35%), Gaps = 21/140 (15%)

Query: 335 AAQKHINPKKFFTFVGDITRLYTGG--GLCCNVIANAANWRLKPGGGGVNAAIFSAAGPA 392
           A  +     ++ T VGD+T +            I NAAN  +   G GV  AI    G  
Sbjct: 6   ATCEKPKFLEYKTCVGDLTVVIAKALDEFKEFCIVNAANEHMT-HGSGVAKAIADFCGLD 64

Query: 393 LEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKG 452
                 +  K   P   ++     T      +G+  V +V+GP       +         
Sbjct: 65  FVEYCEDYVKKHGPQQRLV-----TPS--FVKGIQCVNNVVGPRHGDNNLH--------- 108

Query: 453 CEILRKAYT-SLFEGFLSIV 471
            E L  AY   L +G ++ V
Sbjct: 109 -EKLVAAYKNVLVDGVVNYV 127

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A Length = 301

 Score = 81.7 bits (201), Expect = 3e-17
 Identities = 24/127 (18%), Positives = 41/127 (32%), Gaps = 21/127 (16%)

Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTK----------------- 64
           +++ +G PGSGKST+    +  +   +  I +D   +     +                 
Sbjct: 4   IILTIGCPGSGKSTWAREFIAKNPG-FYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTG 62

Query: 65  --VQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPE-VDVHAVVLDLPAKLCISR 121
                  S        K V +   NL  E+R  +          V   V D+P    + R
Sbjct: 63  MQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKR 122

Query: 122 SVKRIEH 128
           + KR   
Sbjct: 123 NSKRGTK 129

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* Length = 260

 Score = 78.4 bits (193), Expect = 2e-16
 Identities = 34/194 (17%), Positives = 65/194 (33%), Gaps = 29/194 (14%)

Query: 22  LVIMVGAPGSGKSTFC---EHVMRSSARPWARICQDTINKGKSGTK-------VQCLTSA 71
           L+I+ G PG GKSTF      ++  +      +  D I +     K        +     
Sbjct: 6   LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYRL 65

Query: 72  SSALKKGKSVFLDRCNLEREQRTDFVKLG-GPEVDVHAVVLDLPAKLCISRSVKRIEHEG 130
             +  K   V +D  N     R D + +      +   + L     + I R+++R E   
Sbjct: 66  IDSALKNYWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGEKIP 125

Query: 131 NLQGGKAAAVVNRMLQKKELPKLSEGFSRITL------CQNENDVQAALDTYSGLGPLDT 184
           N        V+ +M +K + P     +    L        + N++   L     +     
Sbjct: 126 N-------EVIKKMYEKFDEPGKKYKWDEPFLIIDTTKDIDFNEIAKKL-----IEKSKE 173

Query: 185 LPHGSFGQKNPDAK 198
           +P     ++N +  
Sbjct: 174 IPKFYVLEENKNKN 187

>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A* Length = 193

 Score = 75.1 bits (185), Expect = 8e-16
 Identities = 27/153 (17%), Positives = 50/153 (32%), Gaps = 27/153 (17%)

Query: 322 TQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGV 381
           T  +       A+     +       + GD+  +  G  +  + I NAAN  L   GGG+
Sbjct: 17  TTENLYFQGAMAEKLNAFLVHDNVAFYQGDVDTVVNG--VDFDFIVNAANENLA-HGGGL 73

Query: 382 NAAIFSAAGPALEVATAERAK---SLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMN 438
             A+       L+  + E       +  G  V+V                + +V+GP   
Sbjct: 74  AKALDVYTKGKLQRLSKEHIGLAGKVKVGTGVMVEC----------DSLRIFNVVGPRKG 123

Query: 439 PRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIV 471
                          ++L KAY ++     + +
Sbjct: 124 KHER-----------DLLIKAYNTINNEQGTPL 145

>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A* Length = 168

 Score = 74.2 bits (183), Expect = 1e-15
 Identities = 30/123 (24%), Positives = 47/123 (38%), Gaps = 30/123 (24%)

Query: 340 INPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAE 399
           +    +    GDI            VI NAAN + +  GGGV  A++     + ++   E
Sbjct: 1   MKAPSYHVVRGDIATA------TEGVIINAANSKGQ-PGGGVCGALYKKFPESFDLQPIE 53

Query: 400 RAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKA 459
                  G + +V   +           H+IH +GPN N           V+G + L +A
Sbjct: 54  ------VGKARLVKGAA----------KHIIHAVGPNFN-------KVSEVEGDKQLAEA 90

Query: 460 YTS 462
           Y S
Sbjct: 91  YES 93

>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63} Length = 174

 Score = 73.9 bits (182), Expect = 2e-15
 Identities = 29/132 (21%), Positives = 46/132 (34%), Gaps = 27/132 (20%)

Query: 343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAK 402
           K    ++GDI+ L        + + NAAN  L   GGGV  AI       L+  + +   
Sbjct: 17  KNVKFYLGDISHLVNCVS--FDFVVNAANENLL-HGGGVARAIDILTEGQLQSLSKDYIS 73

Query: 403 S---LYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKA 459
           S   L  G  V++               +V +V+GP                   +L +A
Sbjct: 74  SNGPLKVGAGVMLE----------CEKFNVFNVVGPRTGKHEH-----------SLLVEA 112

Query: 460 YTSLFEGFLSIV 471
           Y S+       +
Sbjct: 113 YNSILFENGIPL 124

>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens} Length = 221

 Score = 74.7 bits (184), Expect = 2e-15
 Identities = 18/128 (14%), Positives = 38/128 (29%), Gaps = 29/128 (22%)

Query: 340 INPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPAL--EVAT 397
               +       +    T      +V+ N+    L    G ++ ++   AGP L  E+ T
Sbjct: 36  PGGLQMLLVKEGVQNAKT------DVVVNSVPLDLVLSRGPLSKSLLEKAGPELQEELDT 89

Query: 398 AERAKSLYPGNSVIVP---LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCE 454
             +  ++  G  +      L             +V+HV+ P       +          +
Sbjct: 90  VGQGVAVSMGTVLKTSSWNLDC----------RYVLHVVAPEWRNGSTSS--------LK 131

Query: 455 ILRKAYTS 462
           I+      
Sbjct: 132 IMEDIIRE 139

>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A* Length = 211

 Score = 73.9 bits (182), Expect = 4e-15
 Identities = 33/139 (23%), Positives = 47/139 (33%), Gaps = 33/139 (23%)

Query: 336 AQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEV 395
            +  +         GDIT+           I NAAN RL+  GGGV  AI  A      +
Sbjct: 14  FEAKVGDITLKLAQGDITQY------PAKAIVNAANKRLE-HGGGVAYAIAKACAGDAGL 66

Query: 396 ATAERAKSLY---------PGNSVIVP---LPSTSPLCGREGVTHVIHVLGPNMNPRRPN 443
            T    K++           G  V+ P   L          G+ +V H +GP  +     
Sbjct: 67  YTEISKKAMREQFGRDYIDHGEVVVTPAMNLEE-------RGIKYVFHTVGPICS----- 114

Query: 444 CLDGDYVKGCEILRKAYTS 462
                  +  E L KA+  
Sbjct: 115 --GMWSEELKEKLYKAFLG 131

>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A* Length = 168

 Score = 67.7 bits (166), Expect = 2e-13
 Identities = 31/132 (23%), Positives = 46/132 (34%), Gaps = 24/132 (18%)

Query: 343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAK 402
            K   + GD+  L     L  +V+ NAAN  L+   GGV  AI    G  L   + E  K
Sbjct: 10  GKVSFYQGDLDVLINF--LEPDVLVNAANGDLR-HVGGVARAIDVFTGGKLTKRSKEYLK 66

Query: 403 SLYP---GNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKA 459
           S      GN+V+                 V++ +GP     R              L   
Sbjct: 67  SSKAIAPGNAVLFE--------NVLEHLSVMNAVGPRNGDSRVE----------GKLCNV 108

Query: 460 YTSLFEGFLSIV 471
           Y ++ +    I+
Sbjct: 109 YKAIAKCDGKIL 120

>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2 Length = 184

 Score = 68.0 bits (167), Expect = 2e-13
 Identities = 39/119 (32%), Positives = 53/119 (44%), Gaps = 31/119 (26%)

Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLY---P 406
           GDIT+L        +VI NAAN  L  GGGGV+ AI  AAGPAL  A  +  +       
Sbjct: 10  GDITKL------AVDVIVNAANPSLM-GGGGVDGAIHRAAGPALLDACLKVRQQQGDCPT 62

Query: 407 GNSVIVP---LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTS 462
           G++VI     LP+            V+H +GP       N          ++L+ AY +
Sbjct: 63  GHAVITLAGDLPA----------KAVVHTVGPVWRGGEQNE--------DQLLQDAYLN 103

>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A* Length = 182

 Score = 67.7 bits (166), Expect = 3e-13
 Identities = 32/118 (27%), Positives = 46/118 (38%), Gaps = 28/118 (23%)

Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYP--- 406
            DI +          VI NAAN  LK  GGGV  A+  A   A++  + +  K   P   
Sbjct: 27  VDIVKEAQSAN--PMVIVNAANIHLK-HGGGVAGALNKATNGAMQKESDDYIKLNGPLTV 83

Query: 407 GNSVIVPLPSTSP--LCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTS 462
           G S +      S   L         +HV+GPN+N               ++L+ AY +
Sbjct: 84  GGSCL-----LSGHNLA-----KKCLHVVGPNLN--AGED--------IQLLKAAYEN 121

>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A Length = 159

 Score = 66.4 bits (163), Expect = 4e-13
 Identities = 31/123 (25%), Positives = 41/123 (33%), Gaps = 32/123 (26%)

Query: 343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAK 402
            +     GDIT          + I NAAN  LK  G GV  AI    GP+++       K
Sbjct: 2   ARIRVVQGDITEF------QGDAIVNAANNYLK-LGAGVAGAILRKGGPSIQEECDRIGK 54

Query: 403 SLYPGNSVIVP---LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKA 459
            +  G + +     LP            +VIH       P              E +RKA
Sbjct: 55  -IRVGEAAVTGAGNLPV----------RYVIHAAVLGDEPASL-----------ETVRKA 92

Query: 460 YTS 462
             S
Sbjct: 93  TKS 95

>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A Length = 168

 Score = 66.5 bits (163), Expect = 4e-13
 Identities = 24/116 (20%), Positives = 36/116 (31%), Gaps = 36/116 (31%)

Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNS 409
            DI +           + NAAN R    G GV  A++     + + +          G +
Sbjct: 17  MDIAKN------DEECVVNAANPRGL-PGDGVCKAVYKKWPESFKNSATP------VGTA 63

Query: 410 VIVP---LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTS 462
             V     P             VIH +GPN +       +    +G   L  AY  
Sbjct: 64  KTVMCGTYP-------------VIHAVGPNFS-------NYSESEGDRELAAAYRE 99

>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens} Length = 214

 Score = 67.7 bits (166), Expect = 5e-13
 Identities = 36/119 (30%), Positives = 51/119 (42%), Gaps = 30/119 (25%)

Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAE---RAKSLYP 406
           GD+ RL        +V+ NA+N  LK   GG+ AA+  AAGP L+    +   R   L P
Sbjct: 44  GDLARL------PVDVVVNASNEDLK-HYGGLAAALSKAAGPELQADCDQIVKREGRLLP 96

Query: 407 GNSVIVP---LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTS 462
           GN+ I     LP            HVIH +GP  +         +  +   +LR+A   
Sbjct: 97  GNATISKAGKLPY----------HHVIHAVGPRWS-------GYEAPRCVYLLRRAVQL 138

>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens} Length = 193

 Score = 64.9 bits (159), Expect = 3e-12
 Identities = 17/119 (14%), Positives = 31/119 (26%), Gaps = 30/119 (25%)

Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYP--- 406
            DI+ + +   +    I +     +      +  A+  A G        E  KS  P   
Sbjct: 26  SDISHIGS---MRVEGIVHPTTAEID-LKEDIGKALEKAGGKEFLETVKELRKSQGPLEV 81

Query: 407 GNSVIVP---LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTS 462
             + +     L +            VIH   P     +            E L +   +
Sbjct: 82  AEAAVSQSSGLAA----------KFVIHCHIPQWGSDKCE----------EQLEETIKN 120

>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A Length = 193

 Score = 63.8 bits (156), Expect = 6e-12
 Identities = 21/126 (16%), Positives = 34/126 (26%), Gaps = 33/126 (26%)

Query: 343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAK 402
           +K      DI  +        + + +  N      GG V + +    G     A  E  K
Sbjct: 19  QKLQVVQADIASI------DSDAVVHPTNTDFY-IGGEVGSTLEKKGGKEFVEAVLELRK 71

Query: 403 SLYP---GNSVIVP---LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEIL 456
              P     + +     LP+            VIH   P     +            E+L
Sbjct: 72  KNGPLEVAGAAVSAGHGLPA----------KFVIHCNSPVWGSDKC----------EELL 111

Query: 457 RKAYTS 462
            K   +
Sbjct: 112 EKTVKN 117

>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens} Length = 235

 Score = 64.3 bits (157), Expect = 9e-12
 Identities = 39/147 (26%), Positives = 53/147 (36%), Gaps = 31/147 (21%)

Query: 320 DLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGG 379
           ++ +G  +          K +N +K      DIT+L        + I NAAN  L  GGG
Sbjct: 40  EMAKGVAVKVEEPRYKKDKQLN-EKISLLRSDITKL------EVDAIVNAANSSLL-GGG 91

Query: 380 GVNAAIFSAAGPALEVATAERAKSLYPGNSVIVP---LPSTSPLCGREGVTHVIHVLGPN 436
           GV+  I  AAGP L             G + I     LP+           +VIH +GP 
Sbjct: 92  GVDGCIHRAAGPLLTDECRTLQS-CKTGKAKITGGYRLPA----------KYVIHTVGPI 140

Query: 437 MNPRRPNCLDGDYVKGC-EILRKAYTS 462
                     G+        LR  Y S
Sbjct: 141 AY--------GEPSASQAAELRSCYLS 159

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193

 Score = 58.0 bits (140), Expect = 7e-10
 Identities = 24/179 (13%), Positives = 56/179 (31%), Gaps = 25/179 (13%)

Query: 19  KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG---------------- 62
              L+I+ G P +GK+T  + +          + +D   +                    
Sbjct: 4   TPALIIVTGHPATGKTTLSQALAT--GLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGAT 61

Query: 63  TKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISR 121
             +    +A++ L+ G+S+ ++              L          +       + + R
Sbjct: 62  AIMMLYHTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVER 121

Query: 122 SVKRIEHEGNLQGGKAA---AVVNRMLQKKELPKLSEGFSRITLCQ---NENDVQAALD 174
            + RI       G       A +  +  + ++P L  G   +T+      + D+ A + 
Sbjct: 122 ILSRIAQGARHPGHCDDRSPADLELVRSRGDIPPLPLGGPLLTVDTTFPEQIDMNAIVQ 180

>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A* Length = 284

 Score = 54.7 bits (131), Expect = 3e-08
 Identities = 23/177 (12%), Positives = 49/177 (27%), Gaps = 13/177 (7%)

Query: 309 NKLGNARLVLVDLTQG------SKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLC 362
           N +   R++L D  +         I            I+     + +  + +        
Sbjct: 12  NGVKKMRIILCDTNEVVTNLWQESIPHAYIQNDKYLCIHHGHLQSLMDSMRKGDAIHHGH 71

Query: 363 CNVIANAANWRLKPGGGGVNAAIFSAAGPAL---EVATAERAKSLYPGNSVIVP---LPS 416
              I +  N      GGG + A+++  G              +    G++ +V       
Sbjct: 72  SYAIVSPGNSYGY-LGGGFDKALYNYFGGKPFETWFRNQLGGRYHTVGSATVVDLQRCLE 130

Query: 417 TSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRS 473
              +  R+G+ ++IHV                   G E +  A  +        +  
Sbjct: 131 EKTIECRDGIRYIIHVPTVVAPSAPIFNPQNPLKTGFEPVFNAMWNALMHSPKDIDG 187

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 9e-08
 Identities = 68/388 (17%), Positives = 106/388 (27%), Gaps = 98/388 (25%)

Query: 2   DTDIDDTCKAKDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTIN 57
             +ID    +KD      ++   ++         F E V+R +      P     +    
Sbjct: 48  KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107

Query: 58  KGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKL 117
             +              L     VF    N+ R Q                  L L   L
Sbjct: 108 MTRM------YIEQRDRLYNDNQVFAKY-NVSRLQP----------------YLKLRQAL 144

Query: 118 CISRSVKRIEHEGNLQG-GK---AAAVVNRMLQKKELPKLSEGFSRITL--CQNENDVQA 171
              R  K +  +G + G GK   A  V       K   K+      + L  C +   V  
Sbjct: 145 LELRPAKNVLIDG-VLGSGKTWVALDVCL---SYKVQCKMDFKIFWLNLKNCNSPETVLE 200

Query: 172 ALDT-YSGLGP-LDTLPHGSFGQKNPDAKIQLGIMKFLKKVDAPS--------------- 214
            L      + P   +    S   K     IQ  + + LK     +               
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260

Query: 215 --NTG------STASSTQDPVPPQIT-----EEKNSCLEGQEITSLLSDAAG-------E 254
             N        +      D +    T     +  +  L   E+ SLL             
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 255 EVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDF--QFNNEKASDVIIEKVEEFVNKL- 311
           EV  T NP   S+        +       L+T D     N +K + +I    E  +N L 
Sbjct: 321 EVLTT-NPRRLSI--------IAESIRDGLATWDNWKHVNCDKLTTII----ESSLNVLE 367

Query: 312 -GNARLVLVDLT---QGSKI----LSLV 331
               R +   L+     + I    LSL+
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLI 395

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 6e-05
 Identities = 67/433 (15%), Positives = 119/433 (27%), Gaps = 140/433 (32%)

Query: 23  VIMVGAPGSGKSTFCEHVMRS----SARP----WARICQDTINKGKSGTKVQCLTSASSA 74
           V++ G  GSGK+     V  S            W       +N     +    L      
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW-------LNLKNCNSPETVLEMLQKL 205

Query: 75  LKKGKSVFLDRCN-----------LEREQRTDFVKLGGPEV-----DV----HAVVLDLP 114
           L +    +  R +           ++ E R                +V         +L 
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265

Query: 115 AK-LCISR--SV---------KRI---EHEGNLQGGKAAAVVNRMLQKK--ELPK----- 152
            K L  +R   V           I    H   L   +  +++ + L  +  +LP+     
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325

Query: 153 -----------LSEGFSRIT--LCQNENDVQAALD-TYSGLGPLDTLPHGSFGQKNPDAK 198
                      + +G +        N + +   ++ + + L P +      F        
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM--F-------- 375

Query: 199 IQLGIMKFLKKVDAPSNTGS---TASSTQDPVPPQITEE--KNSCLEGQ------EITSL 247
            +L +  F      P+   S         D     +  +  K S +E Q       I S+
Sbjct: 376 DRLSV--FPPSAHIPTILLSLIWFDVIKSD--VMVVVNKLHKYSLVEKQPKESTISIPSI 431

Query: 248 LSDAAGEEVKGTENPE-----VASVNQNGSSSDVPTLAFPSLSTSDFQF------NNEKA 296
             +    +VK           V   N    + D   L  P L    +        N E  
Sbjct: 432 YLE---LKVKLENEYALHRSIVDHYNIP-KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487

Query: 297 SDVIIEKVEEFVNKLGNARLVLVDL---------------TQGSKILSLVRAKAAQKHI- 340
                E++  F       R+V +D                  GS + +L + K  + +I 
Sbjct: 488 -----ERMTLF-------RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC 535

Query: 341 -NPKKFFTFVGDI 352
            N  K+   V  I
Sbjct: 536 DNDPKYERLVNAI 548

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Length = 191

 Score = 51.2 bits (122), Expect = 1e-07
 Identities = 29/124 (23%), Positives = 42/124 (33%), Gaps = 20/124 (16%)

Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT----INKGKSGTKVQ----------- 66
           ++++ G PGSGKST  E +      P      D     I  G+    +            
Sbjct: 11  ILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQ 70

Query: 67  -CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKR 125
                A    K+G  V LD   +  +    F  L  P   +H +VL   A   I R + R
Sbjct: 71  IAADVAGRYAKEGYFVILDG-VVRPDWLPAFTALARP---LHYIVLRTTAAEAIERCLDR 126

Query: 126 IEHE 129
               
Sbjct: 127 GGDS 130

>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A* Length = 204

 Score = 45.5 bits (107), Expect = 1e-05
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 559 SWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPK--VH 596
           S+   L      PE +K+ ++   DDVV++ D++PK  +H
Sbjct: 5   SFRDNLKVYIESPESYKN-VIYYDDDVVLVRDMFPKSKMH 43

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Length = 189

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 20/127 (15%), Positives = 38/127 (29%), Gaps = 16/127 (12%)

Query: 19  KQILVIMVGAPGSGKSTFCEHVMRSSARP--------WARICQDTI--NKGKSGTKV--- 65
           K++ +I  G  G GKST C+ +                  +        +      +   
Sbjct: 2   KKLYIIT-GPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWK 60

Query: 66  QCLTSASSALKKGKSVFLDRCNLEREQR--TDFVKLGGPEVDVHAVVLDLPAKLCISRSV 123
                  + L     V LD      E       V+    +V++  ++L    +  + R  
Sbjct: 61  NITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDA 120

Query: 124 KRIEHEG 130
            R + E 
Sbjct: 121 LRKKDEQ 127

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} Length = 253

 Score = 44.5 bits (104), Expect = 5e-05
 Identities = 23/179 (12%), Positives = 54/179 (30%), Gaps = 28/179 (15%)

Query: 19  KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------GKSGTKVQCLT 69
           + I +++ G  G+GK+T      +        I  D+             + G      T
Sbjct: 31  QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEYGKDSVEYT 90

Query: 70  SASS----------ALKKGKSVFLDRCNLEREQRTDFVKLGGPE-VDVHAVVLDLPAKLC 118
              +              G ++ ++      +      +L   +  +V   ++    +L 
Sbjct: 91  KDFAGKMVESLVTKLSSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELS 150

Query: 119 ISRSVKRIEHEGNLQGGKAA--------AVVNRMLQKKELPKLSEGFSRITLCQNENDV 169
              ++ R E    +   +A          +VN ++      +    F RI + Q +   
Sbjct: 151 YLSTLIRYEELYIINPNQARATPKEHHDFIVNHLVDNTRKLEELAIFERIQIYQRDRSC 209

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* Length = 178

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 17/129 (13%), Positives = 35/129 (27%), Gaps = 25/129 (19%)

Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-----------NKGKSGTKVQCL-- 68
           ++I+ G   +GKS     +      PW     D++             G        +  
Sbjct: 5   MIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSI 64

Query: 69  ------------TSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAK 116
                           +  + G  + +D   L      +  +    ++DV  V +     
Sbjct: 65  GPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGA 124

Query: 117 LCISRSVKR 125
           +   R   R
Sbjct: 125 VAEGRETAR 133

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* Length = 287

 Score = 40.8 bits (94), Expect = 8e-04
 Identities = 36/256 (14%), Positives = 68/256 (26%), Gaps = 35/256 (13%)

Query: 19  KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------GKSGTKVQCLT 69
                ++ G PGSGK++    +   +      I  DT  +               V    
Sbjct: 32  SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHV 91

Query: 70  SASS----------ALKKGKSVFLDRCNLEREQRTDFVK-LGGPEVDVHAVVLDLPAKLC 118
           +  S             +G ++ ++      +        L     +    V+ +P    
Sbjct: 92  TPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINS 151

Query: 119 ISRSVKRIEHEGNLQGGKA--------AAVVNRMLQKKELPKLSEGFSRITLCQNENDVQ 170
              +++R E         A          VV  +    E    +  FS I L   E    
Sbjct: 152 YLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNLETLHKTGLFSDIRLYNREGVKL 211

Query: 171 AALDTYSGLGPLDTLPHGSFGQKNPDAK-------IQLGIMKFLKKVDAPSNTGSTASST 223
            +      + P +TL      + +            Q  ++   ++            S 
Sbjct: 212 YSSLETPSISPKETLEKELNRKVSGKEIQPTLERIEQKMVLNKHQETPEFKAIQQKLESL 271

Query: 224 QDPVPPQITEEKNSCL 239
           Q P PP     K   +
Sbjct: 272 QPPTPPIPKTPKLPGI 287

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	636
3eti_A	168	X (ADRP) domain, macro domain of non-structural pr	99.95
3q71_A	221	Poly [ADP-ribose] polymerase 14; structural genomi	99.95
3q6z_A	214	Poly [ADP-ribose] polymerase 14; structural genomi	99.95
1spv_A	184	Putative polyprotein/phosphatase; structural genom	99.94
1yd9_A	193	Core histone macro-H2A.1; alpha-beta structure, A1	99.94
2xd7_A	193	Core histone macro-H2A.2; chromosomal protein, nuc	99.94
2x47_A	235	Macro domain-containing protein 1; signaling prote	99.94
4abl_A	183	Poly [ADP-ribose] polymerase 14; transferase, PARP	99.94
3ejg_A	193	Non-structural protein 3; HCOV 229E, X-domain, mac	99.93
2dx6_A	159	Hypothetical protein TTHA0132; conserved hypotheti	99.92
2acf_A	182	Replicase polyprotein 1AB; ADRP domain, SARS NSP-3	99.92
3gpg_A	168	NSP3, non-structural protein 3; macro domain, X do	99.92
3gqe_A	168	Non-structural protein 3; macro domain, X domain,	99.92
3kh6_A	199	Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3	99.92
3ejf_A	176	Non-structural protein 3; IBV, coronavirus, X-doma	99.92
2vri_A	174	Non-structural protein 3; RNA replication, nucleot	99.91
1vhu_A	211	Hypothetical protein AF1521; structural genomics,	99.91
1njr_A	284	32.1 kDa protein in ADH3-RCA1 intergenic region; s	99.88
4gua_A	670	Non-structural polyprotein; viral precursor polypr	99.87
2jyc_A	160	Uncharacterized protein C6ORF130; macro domain, A1	99.74
2eee_A	149	Uncharacterized protein C6ORF130; macro domain, A1	99.73
2fg1_A	158	Conserved hypothetical protein BT1257; structural	99.7
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	99.7
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	99.67
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	99.58
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	99.55
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	99.54
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	99.53
3q71_A	221	Poly [ADP-ribose] polymerase 14; structural genomi	99.46
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	99.44
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	99.37
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	99.37
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	99.37
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	99.36
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	99.35
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	99.35
1spv_A	184	Putative polyprotein/phosphatase; structural genom	99.35
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	99.34
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	99.34
2xd7_A	193	Core histone macro-H2A.2; chromosomal protein, nuc	99.33
3q6z_A	214	Poly [ADP-ribose] polymerase 14; structural genomi	99.31
1yd9_A	193	Core histone macro-H2A.1; alpha-beta structure, A1	99.3
4abl_A	183	Poly [ADP-ribose] polymerase 14; transferase, PARP	99.29
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.29
2x47_A	235	Macro domain-containing protein 1; signaling prote	99.28
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	99.27
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	99.27
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	99.26
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	99.26
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	99.25
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	99.25
2vli_A	183	Antibiotic resistance protein; transferase, tunica	99.24
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	99.24
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	99.24
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	99.23
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	99.22
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	99.22
3kh6_A	199	Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3	99.2
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	99.2
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	99.2
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	99.19
3gpg_A	168	NSP3, non-structural protein 3; macro domain, X do	99.18
2dx6_A	159	Hypothetical protein TTHA0132; conserved hypotheti	99.11
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	99.1
1vhu_A	211	Hypothetical protein AF1521; structural genomics,	99.1
3ejf_A	176	Non-structural protein 3; IBV, coronavirus, X-doma	99.1
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	99.09
3eti_A	168	X (ADRP) domain, macro domain of non-structural pr	99.08
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	99.07
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	99.06
3gqe_A	168	Non-structural protein 3; macro domain, X domain,	99.04
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	99.04
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	99.02
1njr_A	284	32.1 kDa protein in ADH3-RCA1 intergenic region; s	99.01
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	98.97
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.95
3sp4_A	204	Aprataxin-like protein; HIT domain, zinc finger, D	98.94
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	98.93
2acf_A	182	Replicase polyprotein 1AB; ADRP domain, SARS NSP-3	98.91
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	98.91
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	98.91
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	98.89
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.88
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	98.88
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.87
3ejg_A	193	Non-structural protein 3; HCOV 229E, X-domain, mac	98.84
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	98.84
4gua_A	670	Non-structural polyprotein; viral precursor polypr	98.83
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.83
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.83
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.8
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	98.77
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	98.76
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.76
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	98.75
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	98.73
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	98.71
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	98.7
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	98.69
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.68
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	98.68
1via_A	175	Shikimate kinase; structural genomics, transferase	98.65
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	98.65
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	98.65
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	98.62
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	98.62
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.61
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	98.58
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	98.57
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.55
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	98.54
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.53
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	98.51
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.51
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	98.51
2vri_A	174	Non-structural protein 3; RNA replication, nucleot	98.51
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.51
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.47
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.46
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	98.45
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	98.44
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	98.43
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	98.42
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	98.39
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	98.39
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.38
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.34
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	98.32
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	98.31
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	98.27
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	98.26
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	98.25
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	98.23
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	98.21
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.21
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.2
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.19
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.18
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	98.17
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	98.14
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	98.13
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.11
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	98.11
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.1
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	98.08
2jyc_A	160	Uncharacterized protein C6ORF130; macro domain, A1	97.98
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	97.97
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.97
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.97
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.95
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.95
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	97.93
2eee_A	149	Uncharacterized protein C6ORF130; macro domain, A1	97.91
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	97.87
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	97.86
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.79
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.73
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.61
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.6
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.56
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.55
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.55
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	97.5
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.5
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.43
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.42
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.41
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.41
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.4
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.4
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.35
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	97.34
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	97.32
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.32
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.29
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	97.28
2fg1_A	158	Conserved hypothetical protein BT1257; structural	97.26
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.2
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.2
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	97.17
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	97.13
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.07
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.07
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	97.06
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	97.03
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.01
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.94
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.94
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	96.92
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.89
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.75
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.74
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.73
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	96.72
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.7
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.69
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	96.66
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	96.6
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.59
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	96.57
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.57
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.54
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.51
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	96.5
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.47
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.46
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.39
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	96.33
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	96.3
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	96.3
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	96.29
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.29
3bos_A	242	Putative DNA replication factor; P-loop containing	96.27
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	96.26
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.26
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.25
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	96.24
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.22
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.19
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	96.18
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	96.15
3czq_A	304	Putative polyphosphate kinase 2; structural genomi	96.14
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	96.12
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	96.12
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	96.08
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.06
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.04
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	96.02
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	95.99
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.93
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	95.91
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	95.91
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.9
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	95.87
1e2k_A	331	Thymidine kinase; transferase, antiviral drug, enz	95.85
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	95.79
3sig_A	277	PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1	95.76
3co5_A	143	Putative two-component system transcriptional RES	95.75
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	95.74
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.72
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.72
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	95.66
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.65
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.64
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.6
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.56
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	95.53
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.5
2cvh_A	220	DNA repair and recombination protein RADB; filamen	95.47
2chq_A	319	Replication factor C small subunit; DNA-binding pr	95.46
3pvs_A	447	Replication-associated recombination protein A; ma	95.46
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	95.44
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	95.3
2xxa_A	433	Signal recognition particle protein; protein trans	95.28
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	95.25
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	95.25
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.2
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	95.08
4a74_A	231	DNA repair and recombination protein RADA; hydrola	95.08
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	95.08
2r44_A	331	Uncharacterized protein; putative ATPase, structur	95.04
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	95.03
3bl9_A	301	Scavenger mRNA-decapping enzyme DCPS; ligand compl	94.99
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	94.93
1vlr_A	350	MRNA decapping enzyme; 16740816, structural genomi	94.92
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	94.92
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	94.91
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	94.9
1osn_A	341	Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, tra	94.87
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	94.82
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	94.81
1tue_A	212	Replication protein E1; helicase, replication, E1E	94.8
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	94.8
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	94.8
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	94.67
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	94.62
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	94.61
3n1s_A	119	HIT-like protein HINT; histidine triad nucleotide	94.57
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	94.56
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	94.56
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	94.55
3rhf_A	289	Putative polyphosphate kinase 2 family protein; PS	94.52
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	94.48
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	94.48
4egu_A	119	Histidine triad (HIT) protein; structural genomics	94.48
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	94.48
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	94.45
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	94.44
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	94.41
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	94.4
3o1c_A	126	Histidine triad nucleotide-binding protein 1; hydr	94.38
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	94.37
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	94.35
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	94.32
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	94.31
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	94.26
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	94.23
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	94.21
1u94_A	356	RECA protein, recombinase A; homologous recombinat	94.15
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	94.14
1xp8_A	366	RECA protein, recombinase A; recombination, radior	94.09
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	94.04
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	94.03
2og2_A	359	Putative signal recognition particle receptor; nuc	94.02
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	94.01
2eyu_A	261	Twitching motility protein PILT; pilus retraction	93.9
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	93.89
3oj7_A	117	Putative histidine triad family protein; hydrolase	93.89
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	93.88
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	93.87
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	93.87
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	93.83
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	93.78
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	93.78
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	93.77
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	93.75
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	93.73
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	93.66
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	93.57
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	93.52
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	93.52
2r6a_A	454	DNAB helicase, replicative helicase; replication,	93.51
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	93.5
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	93.32
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	93.31
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	93.24
2fna_A	357	Conserved hypothetical protein; structural genomic	93.22
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	93.12
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	93.1
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	93.09
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	93.07
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	93.0
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	92.93
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	92.9
2qgz_A	308	Helicase loader, putative primosome component; str	92.85
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	92.83
1b0u_A	262	Histidine permease; ABC transporter, transport pro	92.82
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	92.81
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	92.74
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	92.73
2wji_A	165	Ferrous iron transport protein B homolog; membrane	92.73
2z43_A	324	DNA repair and recombination protein RADA; archaea	92.72
2ewv_A	372	Twitching motility protein PILT; pilus retraction	92.72
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	92.69
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	92.67
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	92.64
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	92.62
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	92.59
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	92.54
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	92.53
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	92.53
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	92.52
1ji0_A	240	ABC transporter; ATP binding protein, structural g	92.5
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	92.49
3p0t_A	138	Uncharacterized protein; ssgcid, HIT-like protein,	92.47
1fit_A	147	FragIle histidine protein; FHIT, fragIle histidine	92.47
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	92.44
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	92.42
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	92.42
1g6h_A	257	High-affinity branched-chain amino acid transport	92.4
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	92.38
2ghi_A	260	Transport protein; multidrug resistance protein, M	92.37
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	92.36
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	92.34
2hf9_A	226	Probable hydrogenase nickel incorporation protein	92.34
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	92.34
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	92.3
3ksv_A	149	Uncharacterized protein; HIT family, structural ge	92.3
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	92.23
3kta_A	182	Chromosome segregation protein SMC; structural mai	92.22
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	92.2
1sgw_A	214	Putative ABC transporter; structural genomics, P p	92.2
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	92.17
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	92.14
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	92.14
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	92.11
1xqu_A	147	HIT family hydrolase; protein STRU initiative, PSI	92.1
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	92.1
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	92.08
3io5_A	333	Recombination and repair protein; storage dimer, i	92.03
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	92.0
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	91.99
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	91.98
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	91.97
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	91.96
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	91.95
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	91.94
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	91.94
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	91.93
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	91.87
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	91.84
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	91.84
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	91.83
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	91.82
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	91.82
3r6f_A	135	HIT family protein; structural genomics, seattle s	91.74
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	91.74
1nrj_B	218	SR-beta, signal recognition particle receptor beta	91.67
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	91.67
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	91.65
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	91.6
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	91.6
2ged_A	193	SR-beta, signal recognition particle receptor beta	91.59
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	91.59
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	91.58
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	91.53
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	91.52
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	91.49
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	91.45
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	91.45
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	91.44
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	91.44
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	91.44
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	91.43
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	91.42
3lb5_A	161	HIT-like protein involved in cell-cycle regulatio;	91.4
1p9r_A	418	General secretion pathway protein E; bacterial typ	91.32
1y23_A	145	HIT, histidine triad protein; HIT protein, PKCI-1,	91.3
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	91.27
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	91.26
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	91.19
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	91.18
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	91.17
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	91.15
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	91.14
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	91.13
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	91.12
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	91.1
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	91.08
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	91.06
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	91.05
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	91.04
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	91.03
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	91.03
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	91.03
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	91.01
3o0m_A	149	HIT family protein; ssgcid, NIH, niaid, SBRI, UW,	90.99
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	90.98
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	90.98
2eo4_A	149	150AA long hypothetical histidine triad nucleotid	90.97
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	90.93
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	90.91
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	90.9
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	90.86
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	90.82
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	90.78
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	90.78
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	90.76
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	90.72
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	90.69
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	90.68
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	90.68
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	90.66
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	90.64
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	90.64
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	90.63
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	90.6
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	90.59
3imi_A	147	HIT family protein; structural genomics, infectiou	90.58
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	90.57
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	90.47
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	90.35
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	90.3
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	90.22
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	90.21
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	90.2
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	90.19
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	90.15
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	90.11
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	90.1
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	90.08
3l7x_A	173	SMU.412C, putative HIT-like protein involved in ce	90.05
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	89.94
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	89.9
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	89.9
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	89.89
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	89.87
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	89.86
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	89.86
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	89.86
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	89.81
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	89.8
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	89.77
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	89.75
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	89.67
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	89.66
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	89.66
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	89.66
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	89.65
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	89.64
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	89.64
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	89.62
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	89.61
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	89.59
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	89.58
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	89.5
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	89.43
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	89.41
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	89.4
2fh5_B	214	SR-beta, signal recognition particle receptor beta	89.35

>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A*

Probab=99.95  E-value=3.9e-29  Score=240.04  Aligned_cols=118  Identities=25%  Similarity=0.214  Sum_probs=105.7

Q ss_pred             eEEEEEEcccce----ecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCcEEEecCC
Q 006654          343 KKFFTFVGDITR----LYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPLP  415 (636)
Q Consensus       343 ~~v~v~~GDIt~----~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~---~~~~~G~avvT~l~  415 (636)
                      .+|.+++||||+    +.      +||||||||+.|. +||||++||+++||++|++||+++.   +++++|++++|+  
T Consensus        10 ~~i~l~~GDIt~~~~~~~------vDaIVNaAN~~l~-~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~--   80 (168)
T 3eti_A           10 GKVSFYQGDLDVLINFLE------PDVLVNAANGDLR-HVGGVARAIDVFTGGKLTKRSKEYLKSSKAIAPGNAVLFE--   80 (168)
T ss_dssp             TTEEEEESCHHHHHHHHC------CSEEEEEECTTCC-CCSTTHHHHHHHTTTHHHHHHHHHHTTSCCCCTTEEEEEE--
T ss_pred             CeEEEEeCcccccCCCCC------CCEEEeCCCcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEec--
Confidence            468999999999    66      9999999999999 9999999999999999999999973   789999999999  


Q ss_pred             CCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhHHHhhccccCCCCCCCcCc
Q 006654          416 STSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDI  485 (636)
Q Consensus       416 ~~~~~~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~siaf~~~~~~~~~~~~~  485 (636)
                          +|  |+++||||+|||.|+..          ...++|++||++||+.+.|||||+||+|.+-.|.-
T Consensus        81 ----g~--l~~~~VIHtVgP~~~~~----------~~~~~L~~~y~~~L~~~~SIAfP~IstG~~g~P~~  134 (168)
T 3eti_A           81 ----NV--LEHLSVMNAVGPRNGDS----------RVEGKLCNVYKAIAKCDGKILTPLISVGIFKVKLE  134 (168)
T ss_dssp             ----EE--ETTEEEEEEECCCTTST----------THHHHHHHHHHHHHTSCSCEEECCTTBSTTCBCHH
T ss_pred             ----CC--CCccEEEEecCCCCCcc----------hHHHHHHHHHHHHHHhcCceeecccccCCCCCCHH
Confidence                33  67799999999999542          35789999999999998999999999987776643

>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens}

Probab=99.95  E-value=4e-28  Score=242.45  Aligned_cols=128  Identities=13%  Similarity=0.098  Sum_probs=112.4

Q ss_pred             hhcCCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc--CCCCCCcEEEecCC
Q 006654          338 KHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA--KSLYPGNSVIVPLP  415 (636)
Q Consensus       338 ~~~~~~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~--~~~~~G~avvT~l~  415 (636)
                      .+.++.+|.|++||||++.      +||||||||+.|.+++|||++||+++||++|++||+++.  +++++|++++|+  
T Consensus        34 ~t~~g~~I~i~~GDIt~~~------vDAIVNaAN~~l~~~gGGV~~AI~~aaG~~L~~ec~~~~~~~~~~~G~a~iT~--  105 (221)
T 3q71_A           34 VSPGGLQMLLVKEGVQNAK------TDVVVNSVPLDLVLSRGPLSKSLLEKAGPELQEELDTVGQGVAVSMGTVLKTS--  105 (221)
T ss_dssp             ECTTCCEEEEEESCGGGCC------SSEEEEECCTTCCTTSSHHHHHHHHHHCTHHHHHHHHHHHTSCCCTTCEEEEE--
T ss_pred             eecCCcEEEEEeCcccCCc------CCEEEECCCCCCCCCCchHHHHHHHHHhHHHHHHHHHHhccCCCCCCeEEEEc--
Confidence            5778999999999999997      999999999999547899999999999999999999974  479999999999  


Q ss_pred             CCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCcCcc
Q 006654          416 STSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNEDIR  486 (636)
Q Consensus       416 ~~~~~~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~~~~  486 (636)
                          + ++|+|+||||+|||.|+...        ..+.++|++||++||++|     .|||||+||++.+-.+.-+
T Consensus       106 ----g-~~Lp~k~VIHtVgP~~~~~~--------~~~~~~L~~~y~~~L~~A~e~~i~SIAfPaIsTG~~G~P~~~  168 (221)
T 3q71_A          106 ----S-WNLDCRYVLHVVAPEWRNGS--------TSSLKIMEDIIRECMEITESLSLKSIAFPAIGTGNLGFPKNI  168 (221)
T ss_dssp             ----C-TTSSSSEEEEECCCCCTTTC--------HHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTSSTTCCCHHH
T ss_pred             ----C-CCCCCCEEEEeCCCCCcCCC--------chHHHHHHHHHHHHHHHHHHhCCceEeeccccCCCCCCCHHH
Confidence                2 45899999999999997642        235689999999999986     4999999999877666533

>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens}

Probab=99.95  E-value=7.8e-28  Score=239.62  Aligned_cols=126  Identities=29%  Similarity=0.283  Sum_probs=110.8

Q ss_pred             hcCCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCcEEEecCC
Q 006654          339 HINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPLP  415 (636)
Q Consensus       339 ~~~~~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~---~~~~~G~avvT~l~  415 (636)
                      ..++.+|.|++||||++.      +||||||||+.|. +||||++||+++||++|++||+++.   +++++|++++|+  
T Consensus        33 ~~~g~~I~v~~GDIt~~~------vDaIVNaAN~~l~-~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~--  103 (214)
T 3q6z_A           33 LAPGVVLIVQQGDLARLP------VDVVVNASNEDLK-HYGGLAAALSKAAGPELQADCDQIVKREGRLLPGNATISK--  103 (214)
T ss_dssp             EETTEEEEEEECCTTSCS------SSEEEEEECTTCC-CCSHHHHHHHHHHCTHHHHHHHHHHHHHCCCCTTCEEEEE--
T ss_pred             cCCCcEEEEEecccccCc------CCEEEeCCCCCCC-CCchHHHHHHHhhhHHHHHHHHHHHHHcCCCCCCeEEEEc--
Confidence            457899999999999998      9999999999999 8999999999999999999999874   789999999998  


Q ss_pred             CCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCcCc
Q 006654          416 STSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNEDI  485 (636)
Q Consensus       416 ~~~~~~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~~~  485 (636)
                          + ++|+|+||||+|||.|+....       ..+.++|++||++||+.|     .|||||+||+|.+-.+.-
T Consensus       104 ----~-~~L~~k~VIH~VgP~~~~~~~-------~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IstG~~g~P~~  166 (214)
T 3q6z_A          104 ----A-GKLPYHHVIHAVGPRWSGYEA-------PRCVYLLRRAVQLSLCLAEKYKYRSIAIPAISSGVFGFPLG  166 (214)
T ss_dssp             ----C-TTSSSSEEEEEECCCCCGGGH-------HHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHH
T ss_pred             ----C-CCCCCCEEEEecCCcccCCCc-------chHHHHHHHHHHHHHHHHHHcCCcEEEECcccCCCCCCCHH
Confidence                2 458999999999999976421       234689999999999986     499999999987766643

>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2

Probab=99.94  E-value=3.9e-27  Score=229.89  Aligned_cols=121  Identities=31%  Similarity=0.375  Sum_probs=107.4

Q ss_pred             eEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCcEEEecCCCCCC
Q 006654          343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPLPSTSP  419 (636)
Q Consensus       343 ~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~---~~~~~G~avvT~l~~~~~  419 (636)
                      .+|.+++||||++.      +||||||||+.|. +||||++||+++|||+|++||+++.   +++++|++++|+      
T Consensus         3 ~~i~i~~GDIt~~~------~DaIVNaaN~~l~-~ggGv~~aI~~aaG~~l~~e~~~~~~~~g~~~~G~a~iT~------   69 (184)
T 1spv_A            3 TRIHVVQGDITKLA------VDVIVNAANPSLM-GGGGVDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITL------   69 (184)
T ss_dssp             CCEEEEESCGGGCC------CSEEEEECCTTCS-CCSHHHHHHHHHHCHHHHHHHHHHHHHHCSCCTTCEEEEC------
T ss_pred             CeEEEEeCcCCcCC------CCEEEECCCCCCC-CCchHHHHHHHHhCHHHHHHHHHHHHhcCCCCCCCEEEee------
Confidence            56999999999997      9999999999999 9999999999999999999999873   789999999998      


Q ss_pred             CCCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCcCc
Q 006654          420 LCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNEDI  485 (636)
Q Consensus       420 ~~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~~~  485 (636)
                       .++|+|+||||+|||.|+....        ...++|++||++||+.|     .|||||+||+|.+-.+.-
T Consensus        70 -~~~L~~k~VIH~vgP~~~~~~~--------~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~  131 (184)
T 1spv_A           70 -AGDLPAKAVVHTVGPVWRGGEQ--------NEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRA  131 (184)
T ss_dssp             -CTTSSSSEEEEECCCCCSSSSS--------SHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHH
T ss_pred             -CCCCCCCEEEEEcCCcccCCCc--------chHHHHHHHHHHHHHHHHHhCCceEEeccccCCCCCCCHH
Confidence             2458899999999999976532        35789999999999987     499999999887766543

>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A

Probab=99.94  E-value=5.1e-27  Score=230.67  Aligned_cols=121  Identities=17%  Similarity=0.121  Sum_probs=107.8

Q ss_pred             CCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCcEEEecCCCC
Q 006654          341 NPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPLPST  417 (636)
Q Consensus       341 ~~~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~---~~~~~G~avvT~l~~~  417 (636)
                      .+.+|.|++||||++.      +||||||||+.|. +||||++||+++||++|++||+++.   +++++|++++|+    
T Consensus        17 ~~~~i~i~~GDIt~~~------~DaIVNaaN~~l~-~ggGv~~aI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~----   85 (193)
T 1yd9_A           17 LGQKLQVVQADIASID------SDAVVHPTNTDFY-IGGEVGSTLEKKGGKEFVEAVLELRKKNGPLEVAGAAVSA----   85 (193)
T ss_dssp             TSCEEEEECSCGGGCC------CSEEEEECCTTCC-CCSHHHHHHHHHHHHHHHHHHHHHHHHHCSCCTTCEEEEE----
T ss_pred             CCCEEEEEeCccCcCc------CCEEEECCCccCC-CCchHHHHHHHHhhHHHHHHHHHHHHHcCCCCCCCEEEec----
Confidence            4688999999999997      9999999999999 8999999999999999999999863   789999999998    


Q ss_pred             CCCCCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCcCc
Q 006654          418 SPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNEDI  485 (636)
Q Consensus       418 ~~~~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~~~  485 (636)
                         .++|+|+||||+|||.|+..          ...++|++||++||+.|     .|||||+||++.+-.+.-
T Consensus        86 ---~~~L~~k~VIH~vgP~~~~~----------~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~  145 (193)
T 1yd9_A           86 ---GHGLPAKFVIHCNSPVWGSD----------KCEELLEKTVKNCLALADDRKLKSIAFPSIGSGRNGFPKQ  145 (193)
T ss_dssp             ---CTTSSSSEEEEECCCCTTST----------THHHHHHHHHHHHHHHHHHTTCSEEEECCCSBSTTCBCHH
T ss_pred             ---CCCCCCCEEEEeCCCCcCCc----------chHHHHHHHHHHHHHHHHHhCCceEeecccccCCCCCCHH
Confidence               24588999999999999642          35789999999999986     499999999887766643

>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens}

Probab=99.94  E-value=5.3e-27  Score=230.60  Aligned_cols=122  Identities=15%  Similarity=0.122  Sum_probs=108.1

Q ss_pred             cCCeEEEEEEccccee---cccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCcEEEec
Q 006654          340 INPKKFFTFVGDITRL---YTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVP  413 (636)
Q Consensus       340 ~~~~~v~v~~GDIt~~---~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~---~~~~~G~avvT~  413 (636)
                      ..+.+|.+++||||++   .      +||||||||+.|. +||||++||+++||++|++||+++.   +++++|++++|+
T Consensus        16 ~~~~~i~i~~GDIt~~~~~~------~DaIVNaaN~~l~-~ggGv~~aI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~   88 (193)
T 2xd7_A           16 VLGQKLSLTQSDISHIGSMR------VEGIVHPTTAEID-LKEDIGKALEKAGGKEFLETVKELRKSQGPLEVAEAAVSQ   88 (193)
T ss_dssp             TTSCEEEEEECCGGGGGGCC------CSEEEEEECTTCC-CCSHHHHHHHHHHHHHHHHHHHHHHHHTCSCCTTCEEEEE
T ss_pred             CCCCEEEEEeCcccccCCCC------CCEEEECCCccCC-CccHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCCCeEEee
Confidence            3468899999999999   7      9999999999999 8999999999999999999999863   789999999998


Q ss_pred             CCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCcCc
Q 006654          414 LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNEDI  485 (636)
Q Consensus       414 l~~~~~~~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~~~  485 (636)
                             .+.|+|+||||+|||.|+..          ...++|++||++||+.|     .|||||+||.+.+-.+.-
T Consensus        89 -------~~~L~~k~VIH~vgP~~~~~----------~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~  148 (193)
T 2xd7_A           89 -------SSGLAAKFVIHCHIPQWGSD----------KCEEQLEETIKNCLSAAEDKKLKSVAFPPFPSGRNCFPKQ  148 (193)
T ss_dssp             -------CTTSSSSEEEEEECCCTTST----------THHHHHHHHHHHHHHHHHHTTCSEEEECCCCCSTTCCCHH
T ss_pred             -------CCCCCCCEEEEECCCcCCCc----------chHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHH
Confidence                   24588999999999999642          35789999999999986     599999999887766543

>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens}

Probab=99.94  E-value=9.9e-27  Score=234.91  Aligned_cols=121  Identities=30%  Similarity=0.281  Sum_probs=107.0

Q ss_pred             eEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCcEEEecCCCCCCCCC
Q 006654          343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCG  422 (636)
Q Consensus       343 ~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~~~~~~G~avvT~l~~~~~~~~  422 (636)
                      .+|.|++||||++.      +||||||||+.|. +||||++||+++||++|++||+++ +++++|++++|+       .+
T Consensus        62 ~~i~i~~GDIt~~~------vDaIVNaAN~~l~-~ggGV~~AI~~aaG~~l~~ec~~~-g~~~~G~a~iT~-------~~  126 (235)
T 2x47_A           62 EKISLLRSDITKLE------VDAIVNAANSSLL-GGGGVDGCIHRAAGPLLTDECRTL-QSCKTGKAKITG-------GY  126 (235)
T ss_dssp             TTEEEEESCGGGEE------SSEEEEECCTTCS-CCSHHHHHHHHHHCHHHHHHHHTS-CCCCBTCEEEEE-------CT
T ss_pred             CEEEEEeCccCccc------CCEEEEecCcccC-CccHHHHHHHHHhCHHHHHHHHHh-CCCCCCceEEec-------CC
Confidence            56999999999998      9999999999999 999999999999999999999887 789999999998       24


Q ss_pred             CCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCcCc
Q 006654          423 REGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNEDI  485 (636)
Q Consensus       423 ~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~~~  485 (636)
                      .|+|+||||+|||.|.+..       .....++|++||++||+.|     .|||||+||.|.+-.+.-
T Consensus       127 ~L~~k~VIH~vgP~~~~~~-------~~~~~~~L~~~y~~~L~~A~e~~i~SIAfP~IstG~~g~p~~  187 (235)
T 2x47_A          127 RLPAKYVIHTVGPIAYGEP-------SASQAAELRSCYLSSLDLLLEHRLRSVAFPCISTGVFGYPCE  187 (235)
T ss_dssp             TSSSSEEEEEBCCCCTTCC-------CHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTCSTTSCCHH
T ss_pred             CCCCCEEEEecCccccCCC-------CcchHHHHHHHHHHHHHHHHHhCCceEEeccccCCCCCCCHH
Confidence            5889999999999997532       1246789999999999986     499999999887766543

>4abl_A Poly [ADP-ribose] polymerase 14; transferase, PARP14; 1.15A {Homo sapiens} PDB: 4abk_A

Probab=99.94  E-value=7.3e-27  Score=227.44  Aligned_cols=119  Identities=22%  Similarity=0.250  Sum_probs=107.4

Q ss_pred             HhhhhhcCCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCcEEEec
Q 006654          334 KAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVP  413 (636)
Q Consensus       334 ~~~~~~~~~~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~~~~~~G~avvT~  413 (636)
                      ..+++++++.+|++++||||++.      +||||||||+.|. +||||++||+++||++|++||+++ +++++|++++|+
T Consensus        13 ~~~~~~ig~~~i~i~~GDIt~~~------~DaIVNaaN~~l~-~ggGV~~aI~~aaG~~l~~ec~~~-~~~~~G~a~iT~   84 (183)
T 4abl_A           13 GVYEMKIGSIIFQVASGDITKEE------ADVIVNSTSNSFN-LKAGVSKAILECAGQNVERECSQQ-AQQRKNDYIITG   84 (183)
T ss_dssp             TCEEEEETTEEEEEEESCGGGCB------CSEEEEEECTTSC-CCSTHHHHHHHHHCHHHHHHHHHH-HHHSCCSEEEEE
T ss_pred             CceEEEECCEEEEEEeCcccCcc------cCEEEECCCCCCC-CCccHHHHHHHHhhHHHHHHHHHh-cCCCCCceEEec
Confidence            45778899999999999999998      9999999999999 899999999999999999999987 679999999998


Q ss_pred             CCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCcCc
Q 006654          414 LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNEDI  485 (636)
Q Consensus       414 l~~~~~~~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~~~  485 (636)
                            + ++|+|+||||+|||.|                  |++||++||+.|     .|||||+||++.+-.+.-
T Consensus        85 ------~-~~L~~k~VIH~vgP~~------------------L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~  136 (183)
T 4abl_A           85 ------G-GFLRCKNIIHVIGGND------------------VKSSVSSVLQECEKKNYSSICLPAIGTGNAKQHPD  136 (183)
T ss_dssp             ------C-TTSBSSEEEEEETTSC------------------HHHHHHHHHHHHHHTTCCEEEECCTTSSTTCCCHH
T ss_pred             ------C-CCCCCCEEEEeCcHHH------------------HHHHHHHHHHHHHHcCCCeEeeccccCCCCCcCHH
Confidence                  2 4588999999999963                  999999999986     499999999887766643

>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A*

Probab=99.93  E-value=1.4e-26  Score=226.16  Aligned_cols=116  Identities=22%  Similarity=0.219  Sum_probs=102.6

Q ss_pred             CeEEEEEEcccce----ecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHh---cCCCCCCcEEEecC
Q 006654          342 PKKFFTFVGDITR----LYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAER---AKSLYPGNSVIVPL  414 (636)
Q Consensus       342 ~~~v~v~~GDIt~----~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~---~~~~~~G~avvT~l  414 (636)
                      +.+|.+++||||+    +.      +||||||||+.|. +||||++||+++||++|++||+++   .++|++|++++|+ 
T Consensus        37 ~~~i~l~~GDIt~~~~~~~------vDAIVNaAN~~L~-~ggGV~~AI~~aaG~~l~~ec~~l~~~~g~~~~G~a~iT~-  108 (193)
T 3ejg_A           37 HDNVAFYQGDVDTVVNGVD------FDFIVNAANENLA-HGGGLAKALDVYTKGKLQRLSKEHIGLAGKVKVGTGVMVE-  108 (193)
T ss_dssp             ETTEEEEECCHHHHHHHCC------CSEEEEEECTTCC-CCSHHHHHHHHHTTTHHHHHHHHHHHHHCSCCTTCEEEEE-
T ss_pred             CCeEEEEeCcccccCcCCC------cCEEEeCCCcccC-CCchHHHHHHHHhhHHHHHHHHHHHHHcCCCCCCCEEEec-
Confidence            4679999999999    65      9999999999999 999999999999999999999986   3789999999999 


Q ss_pred             CCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhHHHhhccccCCCCCCCcCc
Q 006654          415 PSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDI  485 (636)
Q Consensus       415 ~~~~~~~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~siaf~~~~~~~~~~~~~  485 (636)
                           +++ |   +|||+|||.|+.           ...++|++||++||+...|||||+||+|.+-.+.-
T Consensus       109 -----~~~-L---~VIHtVGP~~~~-----------~~~~~L~~~y~~~L~~~~SIAfPaIstGi~G~P~~  159 (193)
T 3ejg_A          109 -----CDS-L---RIFNVVGPRKGK-----------HERDLLIKAYNTINNEQGTPLTPILSCGIFGIKLE  159 (193)
T ss_dssp             -----ETT-E---EEEEEECCCSST-----------THHHHHHHHHHHHHHSSSCEEECCTTCGGGCCCHH
T ss_pred             -----CCC-e---eEEEecCCCCCc-----------hHHHHHHHHHHHHHHhcCceeecccccCCCCCCHH
Confidence                 333 4   999999999953           24789999999999988999999999887766543

>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A

Probab=99.92  E-value=2.2e-25  Score=212.61  Aligned_cols=116  Identities=27%  Similarity=0.272  Sum_probs=104.1

Q ss_pred             eEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCcEEEecCCCCCCCCC
Q 006654          343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCG  422 (636)
Q Consensus       343 ~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~~~~~~G~avvT~l~~~~~~~~  422 (636)
                      ++|.+++|||+++.      +|||||+||+.|. +||||++||++++|++|+++|++. +++++|++++|+       .+
T Consensus         2 ~~i~i~~GDI~~~~------~daIVnaaN~~l~-~ggGv~~aI~~~~G~~l~~~c~~~-g~~~~G~a~it~-------~~   66 (159)
T 2dx6_A            2 ARIRVVQGDITEFQ------GDAIVNAANNYLK-LGAGVAGAILRKGGPSIQEECDRI-GKIRVGEAAVTG-------AG   66 (159)
T ss_dssp             CEEEEEESCGGGCC------SSEEEEEEETTCC-CCSTTHHHHHHHHCTHHHHHHHHH-CCCCTTCEEEEE-------CT
T ss_pred             eEEEEEECcCCcCC------CCEEEECCCCCCC-CCchHHHHHHHHhCHHHHHHHHhc-CCCCCCcEEEec-------CC
Confidence            57999999999997      9999999999999 999999999999999999999987 789999999998       24


Q ss_pred             CCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCcC
Q 006654          423 REGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNED  484 (636)
Q Consensus       423 ~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~~  484 (636)
                      .|+|+||||+|||.|+ . .         ..++|++||+++|+.+     .|||||+||.+.+-.+.
T Consensus        67 ~L~~~~Vih~vgp~~~-~-~---------~~~~L~~~~~~~L~~a~~~~~~sIa~P~igtG~~g~p~  122 (159)
T 2dx6_A           67 NLPVRYVIHAAVLGDE-P-A---------SLETVRKATKSALEKAVELGLKTVAFPLLGTGVGGLPV  122 (159)
T ss_dssp             TSSSSEEEEEEEESSS-C-C---------CHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCH
T ss_pred             CCCCCEEEEEeCCCCC-C-c---------hHHHHHHHHHHHHHHHHHcCCcEEEECCccCCCCCCCH
Confidence            5788999999999996 2 1         2689999999999986     49999999988766553

>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A*

Probab=99.92  E-value=6.4e-26  Score=220.52  Aligned_cols=117  Identities=25%  Similarity=0.298  Sum_probs=102.4

Q ss_pred             CeEEEEEEccccee----cccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHh---cCCCCCCcEEEecC
Q 006654          342 PKKFFTFVGDITRL----YTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAER---AKSLYPGNSVIVPL  414 (636)
Q Consensus       342 ~~~v~v~~GDIt~~----~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~---~~~~~~G~avvT~l  414 (636)
                      +.+|.|++||||++    .      +||||||||+.|. +||||++||+++||++|++||+++   .+++++|++++|+ 
T Consensus        19 ~~~i~i~~GDIt~~~~~~~------vDAIVNaAN~~l~-~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~-   90 (182)
T 2acf_A           19 TDNVAIKCVDIVKEAQSAN------PMVIVNAANIHLK-HGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLS-   90 (182)
T ss_dssp             SSSEEEEESCHHHHHHHHC------CSEEEEECCTTCC-CCSHHHHHHHHHTTTHHHHHHHHHHHHHCCCCTTCEEEEE-
T ss_pred             CCeEEEEeCcccccccCCC------CCEEEECCCCCCC-CCchHHHHHHHHhCHHHHHHHHHHHHHcCCCCCCcEEEee-
Confidence            35799999999999    7      9999999999999 999999999999999999999986   3889999999998 


Q ss_pred             CCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhHHHhhccccCCCCCCCcC
Q 006654          415 PSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNED  484 (636)
Q Consensus       415 ~~~~~~~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~siaf~~~~~~~~~~~~  484 (636)
                           +++ |+ ++|||+|||.|..+.          ..++|++||+++ ..+.|||||+||+|.+-.+.
T Consensus        91 -----~~~-L~-~~VIH~vgP~~~~~~----------~~~~L~~~y~~~-~~~~SIAfP~IstGi~G~p~  142 (182)
T 2acf_A           91 -----GHN-LA-KKCLHVVGPNLNAGE----------DIQLLKAAYENF-NSQDILLAPLLSAGIFGAKP  142 (182)
T ss_dssp             -----CTT-TC-SEEEEECCCCGGGTC----------CTTHHHHHHHGG-GGSSEEEECCTTCGGGCCCH
T ss_pred             -----CCC-CC-ceEEEECCCCCCCCc----------hHHHHHHHHHHh-cCCCEEEECCcccCCCCCCH
Confidence                 333 54 799999999997532          257999999998 67899999999988776654

>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A

Probab=99.92  E-value=8.7e-26  Score=216.56  Aligned_cols=114  Identities=23%  Similarity=0.196  Sum_probs=97.8

Q ss_pred             eEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCcEEEecCCCCCCCCC
Q 006654          343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCG  422 (636)
Q Consensus       343 ~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~~~~~~G~avvT~l~~~~~~~~  422 (636)
                      ....|++||||++.      +||||||||+.|. +||||++||+++||++++      .+++++|++++|+.        
T Consensus        10 ~~~~~~~GDIt~~~------vDAIVNaAN~~l~-~ggGV~~aI~~aaG~~l~------~~~~~~G~a~iT~~--------   68 (168)
T 3gpg_A           10 PSYRVKRMDIAKND------EECVVNAANPRGL-PGDGVCKAVYKKWPESFK------NSATPVGTAKTVMC--------   68 (168)
T ss_dssp             CCC-CEESCGGGCC------SSCEEEECCTTCC-CCSHHHHHHHHHCGGGGT------TCCCCTTCEEEEEE--------
T ss_pred             CceEEEeCcCCccc------CCEEEeCCCcccC-CCchHHHHHHHHhhHHhh------cCCCCCCCEEEecC--------
Confidence            45679999999998      9999999999999 899999999999999874      37899999999993        


Q ss_pred             CCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCcCcc
Q 006654          423 REGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNEDIR  486 (636)
Q Consensus       423 ~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~~~~  486 (636)
                        +|+||||+|||.|+...       ..++.++|++||++||++|     .|||||+||+|.+-.+.-+
T Consensus        69 --~~k~VIHtVGP~~~~~~-------~~~~~~~L~~~y~~~L~~A~~~~~~SIAfP~IstGi~g~P~~~  128 (168)
T 3gpg_A           69 --GTYPVIHAVGPNFSNYS-------ESEGDRELAAAYREVAKEVTRLGVNSVAIPLLSTGVYSGGKDR  128 (168)
T ss_dssp             --TTEEEEEECCCCTTTSC-------HHHHHHHHHHHHHHHHHHHHHHTCSEEEEECTTSSTTSTTSCC
T ss_pred             --CCCEEEEeCCCCcCCCC-------cchHHHHHHHHHHHHHHHHHHhCCcEEEECccccCCCCCCHHH
Confidence              36999999999998653       1234689999999999986     4999999999877766544

>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A*

Probab=99.92  E-value=1.3e-25  Score=215.38  Aligned_cols=115  Identities=27%  Similarity=0.348  Sum_probs=99.7

Q ss_pred             CeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCcEEEecCCCCCCCC
Q 006654          342 PKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLC  421 (636)
Q Consensus       342 ~~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~~~~~~G~avvT~l~~~~~~~  421 (636)
                      ..+|.+++||||++.      +||||||||+.|. +||||++||+++||++|+      .+.+++|++++|+.       
T Consensus         3 ~~~i~v~~GDIt~~~------vDAIVNaAN~~l~-~ggGV~~aI~~aaG~~l~------~~~~~~G~a~iT~~-------   62 (168)
T 3gqe_A            3 APSYHVVRGDIATAT------EGVIINAANSKGQ-PGGGVCGALYKKFPESFD------LQPIEVGKARLVKG-------   62 (168)
T ss_dssp             CCEEEEEESCGGGCC------SSEEEEEECTTSC-CTTGGGSHHHHHCGGGCC------CCCCCTTCEEEECC-------
T ss_pred             CCeEEEEeCcccCcc------cCEEEeCCCcccC-CCccHHHHHHHHhhHHhc------CCCcCCCcEEEEcC-------
Confidence            468999999999997      9999999999999 899999999999999875      37899999999993       


Q ss_pred             CCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCcCcc
Q 006654          422 GREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNEDIR  486 (636)
Q Consensus       422 ~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~~~~  486 (636)
                         +|+||||+|||.|+...       ..++.++|++||++||++|     .|||||+||+|.+-.+.-+
T Consensus        63 ---~~k~VIH~VgP~~~~~~-------~~~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~  122 (168)
T 3gqe_A           63 ---AAKHIIHAVGPNFNKVS-------EVEGDKQLAEAYESIAKIVNDNNYKSVAIPLLSTGIFSGNKDR  122 (168)
T ss_dssp             ---TTCCEEEEECCCTTTSC-------HHHHHHHHHHHHHHHHHHHHHTTCSEEEEECTTSSTTSCSSCC
T ss_pred             ---CCCEEEEcCCCccCCCC-------chhHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHH
Confidence               36999999999998652       1234689999999999986     5999999999877666544

>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A*

Probab=99.92  E-value=1.5e-25  Score=216.30  Aligned_cols=126  Identities=22%  Similarity=0.192  Sum_probs=104.2

Q ss_pred             hcCCeEEEEEEcccceecccC--cccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCcEEEec
Q 006654          339 HINPKKFFTFVGDITRLYTGG--GLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVP  413 (636)
Q Consensus       339 ~~~~~~v~v~~GDIt~~~~~~--~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~---~~~~~G~avvT~  413 (636)
                      .-++.++++++||||++..+.  +.++||||||||+.|. +||||++||+++||++|++||+++.   ++++   +++|+
T Consensus        10 ~~~~~~i~v~~GDIt~~~vDa~~~~~~DaIVNaAN~~L~-~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~---a~iT~   85 (176)
T 3ejf_A           10 KPKFLEYKTCVGDLTVVIAKALDEFKEFCIVNAANEHMT-HGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQ---RLVTP   85 (176)
T ss_dssp             CCSSCEEEEEESCHHHHHHHHHHHHSSEEEEEECCTTCC-CCSHHHHHHHHHHCHHHHHHHHHHHHHHCCCS---EEEEC
T ss_pred             CCCCceEEEEeeeCeEEeecccccCCCCEEEeCCCcccC-CCchHHHHHHHHhhHHHHHHHHHHHHhcCCCC---eeecc
Confidence            446789999999999996211  2235679999999999 9999999999999999999999873   6676   78887


Q ss_pred             CCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHh-HHHhhccccCCCCCCCcCc
Q 006654          414 LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEG-FLSIVRSQEKLSKGCNEDI  485 (636)
Q Consensus       414 l~~~~~~~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~-a~siaf~~~~~~~~~~~~~  485 (636)
                            | ..+.+++|||+|||.|+..          ...++|++||+++|+. +.|||||+||+|.+-.|.-
T Consensus        86 ------G-~~l~t~~VIHtVGP~~~~~----------~~~~~L~~~y~~~L~~~~~SIAfPaIstGi~g~P~~  141 (176)
T 3ejf_A           86 ------S-FVKGIQCVNNVVGPRHGDN----------NLHEKLVAAYKNVLVDGVVNYVVPVLSLGIFGVDFK  141 (176)
T ss_dssp             ------C-CSTTEEEEEEECCCCTTCS----------CHHHHHHHHHHTTCCTTCCEEEEECCCTTSTTCCHH
T ss_pred             ------c-ccccCCEEEEeCCCCCCCc----------cHHHHHHHHHHHHHHcCCcEEEECccccCCCCCCHH
Confidence                  2 3467799999999999542          2478999999999983 6899999999998777653

>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63}

Probab=99.91  E-value=2.4e-25  Score=215.22  Aligned_cols=119  Identities=24%  Similarity=0.218  Sum_probs=102.1

Q ss_pred             eEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHh---cCCCCCCcEEEecCCCCCC
Q 006654          343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAER---AKSLYPGNSVIVPLPSTSP  419 (636)
Q Consensus       343 ~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~---~~~~~~G~avvT~l~~~~~  419 (636)
                      .+|.+++||||++..  ..++||||||||+.|. +||||++||+++||++|++||+++   .+++++|++++|+      
T Consensus        17 ~~i~i~~GDIt~~~~--~~~~DaIVNaaN~~l~-~ggGv~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~------   87 (174)
T 2vri_A           17 KNVKFYLGDISHLVN--CVSFDFVVNAANENLL-HGGGVARAIDILTEGQLQSLSKDYISSNGPLKVGAGVMLE------   87 (174)
T ss_dssp             TTEEEEESCHHHHTT--TSCCSEEEEEECTTCC-CCSHHHHHHHHHTTTHHHHHHHHHHHHHCSCCTTCEEEEE------
T ss_pred             CeEEEEecccccccc--CCCccEEEECCCccCC-CCCcHhHHHHHHhhHHHHHHHHHHHHhcCCCCCCeEEEEE------
Confidence            569999999999810  1129999999999999 999999999999999999999986   3889999999999      


Q ss_pred             CCCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhHHHhhccccCCCCCCCcCc
Q 006654          420 LCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDI  485 (636)
Q Consensus       420 ~~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~siaf~~~~~~~~~~~~~  485 (636)
                      +++ |   ||||+|||+|+..           ..++|++||+++|+...|||||+||.+.+-.+.-
T Consensus        88 ~~~-l---~VIH~vgP~~~~~-----------~~~~L~~~y~~~L~~~~SIAfP~IstG~~g~p~~  138 (174)
T 2vri_A           88 CEK-F---NVFNVVGPRTGKH-----------EHSLLVEAYNSILFENGIPLMPLLSCGIFGVRIE  138 (174)
T ss_dssp             CSS-C---EEEEEECCCSSTT-----------HHHHHHHHHHHHHHSSSCEEEECSSCGGGCCCHH
T ss_pred             CCC-C---EEEEEcCCCCCcc-----------hHHHHHHHHHHHHhhCCcEEeCccccCCCCCCHH
Confidence            233 3   9999999999421           4789999999999988899999999887766543

>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A*

Probab=99.91  E-value=6e-25  Score=218.71  Aligned_cols=128  Identities=26%  Similarity=0.208  Sum_probs=111.4

Q ss_pred             HHhhhhhcCCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhc----HHHHHHHHHh---cCC--
Q 006654          333 AKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAG----PALEVATAER---AKS--  403 (636)
Q Consensus       333 ~~~~~~~~~~~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG----~~l~~e~~~~---~~~--  403 (636)
                      +..++.++++++|.+++||||++.      +||||||||+.|. +||||++||+++||    ++|++||+++   .++  
T Consensus        11 ~~~~~~~~~~~~i~i~~GDIt~~~------vDaIVNaaN~~l~-~ggGV~~aI~~aaG~~~~~~l~~ec~~~~~~~g~~~   83 (211)
T 1vhu_A           11 EVLFEAKVGDITLKLAQGDITQYP------AKAIVNAANKRLE-HGGGVAYAIAKACAGDAGLYTEISKKAMREQFGRDY   83 (211)
T ss_dssp             EEEEEEEETTEEEEEEESCGGGSC------CSEEEEEECTTCC-CCSHHHHHHHHHHHSSHHHHHHHHHHHHHHHHSSSC
T ss_pred             hhhhheeECCEEEEEEecccCcCC------CCEEEECCCcccc-CccHHHHHHHHHhCCCchHHHHHHHHHHHHHcCCCc
Confidence            344567889999999999999997      9999999999999 89999999999999    9999999985   266  


Q ss_pred             CCCCcEEEecCCCCCCCCCCCCc---cEEEEecCC----CCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhh
Q 006654          404 LYPGNSVIVPLPSTSPLCGREGV---THVIHVLGP----NMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIV  471 (636)
Q Consensus       404 ~~~G~avvT~l~~~~~~~~~l~~---k~VIH~VgP----~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~sia  471 (636)
                      +++|++++|+       .+.|++   +||||+|||    .|+.           ...++|++||++||+.|     .|||
T Consensus        84 ~~~G~a~iT~-------~~~L~~~g~k~VIH~vgP~~~~~~~~-----------~~~~~L~~~y~~~L~~A~~~~i~SIA  145 (211)
T 1vhu_A           84 IDHGEVVVTP-------AMNLEERGIKYVFHTVGPICSGMWSE-----------ELKEKLYKAFLGPLEKAEEMGVESIA  145 (211)
T ss_dssp             CCTTCCEEEE-------CGGGGGGTCCEEEEEECCCCTTCCCH-----------HHHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred             ccCCcEEEEE-------CCCCCccCcCEEEEecCCccccccCc-----------chHHHHHHHHHHHHHHHHHcCCCEEE
Confidence            9999999999       234666   999999999    8842           24789999999999986     4999


Q ss_pred             ccccCCCCCCCcCc
Q 006654          472 RSQEKLSKGCNEDI  485 (636)
Q Consensus       472 f~~~~~~~~~~~~~  485 (636)
                      ||+||.+.+-.+.-
T Consensus       146 fP~IstG~~G~p~~  159 (211)
T 1vhu_A          146 FPAVSAGIYGCDLE  159 (211)
T ss_dssp             ECCTTSSTTCCCHH
T ss_pred             eccccCCCCCCCHH
Confidence            99999887766643

>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A*

Probab=99.88  E-value=2.5e-23  Score=214.69  Aligned_cols=143  Identities=17%  Similarity=0.152  Sum_probs=107.4

Q ss_pred             CeEEEEEEcccceec---ccCcc----cccEEEeCCCCCCcCCCChhhHHHHHhhc-HHHHHHHHHh--cCCCCCCcEEE
Q 006654          342 PKKFFTFVGDITRLY---TGGGL----CCNVIANAANWRLKPGGGGVNAAIFSAAG-PALEVATAER--AKSLYPGNSVI  411 (636)
Q Consensus       342 ~~~v~v~~GDIt~~~---~~~~~----~~daIVNaaN~~L~~~ggGVa~AI~~aaG-~~l~~e~~~~--~~~~~~G~avv  411 (636)
                      ..+|.+++||||++.   .+|++    .+||||||||+.|. +||||++||+++|| +.|+++|+++  .+.+++|++++
T Consensus        44 ~~~i~i~~GDIt~l~~~~~~~~~~~~~~vDAIVNaANs~l~-~gGGVd~AI~raaGg~~l~~ec~~~~~~g~~~~G~a~i  122 (284)
T 1njr_A           44 DKYLCIHHGHLQSLMDSMRKGDAIHHGHSYAIVSPGNSYGY-LGGGFDKALYNYFGGKPFETWFRNQLGGRYHTVGSATV  122 (284)
T ss_dssp             -CCEEEEESCHHHHHHHHHTTCC----CCEEEEECCBTTCC-CCSSHHHHHHHHHTSHHHHHHHHHHTTTSCCCTTCCEE
T ss_pred             CCEEEEEeCCHhhhhhhccccccccCCCccEEEeCCCCCCC-CCchHHHHHHHhhCcHHHHHHHHHHHhcCCCCCCeEEE
Confidence            468999999999991   12222    39999999999999 99999999999975 7889999986  37799999999


Q ss_pred             ecCC---CCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCCccchHHHHHHHHHHHHHh----HHHhhccccCCCCCCCc
Q 006654          412 VPLP---STSPLCGREGVTHVIHVLGPNMNPRR-PNCLDGDYVKGCEILRKAYTSLFEG----FLSIVRSQEKLSKGCNE  483 (636)
Q Consensus       412 T~l~---~~~~~~~~l~~k~VIH~VgP~~~~~~-~~~~~~~~~~~~~~L~~ay~~~L~~----a~siaf~~~~~~~~~~~  483 (636)
                      |+..   ..+-....|+|+||||+|||.|.... .+. .+.+....++|++||++||+.    ..|||||+||+|.+..+
T Consensus       123 T~~~~~~~~~~~~~~L~~k~VIHtvgp~~~~~~~~d~-~~p~~~~~~~L~~~~~~~L~~ae~~i~SIAfPaIsTGv~G~P  201 (284)
T 1njr_A          123 VDLQRCLEEKTIECRDGIRYIIHVPTVVAPSAPIFNP-QNPLKTGFEPVFNAMWNALMHSPKDIDGLIIPGLCTGYAGVP  201 (284)
T ss_dssp             EEGGGGGCC----CCTTEEEEEECCCBSCSSSCSCCT-TCHHHHTHHHHHHHHHHHHHTSCTTCSEEEECCTTCSTTCCC
T ss_pred             EECCcccccccchhcCCCCEEEEeCCCccCCCCCccc-ccccccHHHHHHHHHHHHHHHHHhCCCEEEECcccccCCCCC
Confidence            9921   00000127999999999999996541 000 000012468999999999986    47999999999988776


Q ss_pred             Ccc
Q 006654          484 DIR  486 (636)
Q Consensus       484 ~~~  486 (636)
                      .-+
T Consensus       202 ~~~  204 (284)
T 1njr_A          202 PII  204 (284)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}

Probab=99.87  E-value=7.7e-23  Score=221.69  Aligned_cols=111  Identities=20%  Similarity=0.222  Sum_probs=98.0

Q ss_pred             eEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCcEEEecCCCCCCCCC
Q 006654          343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCG  422 (636)
Q Consensus       343 ~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~~~~~~G~avvT~l~~~~~~~~  422 (636)
                      ..+.|++||||+..      +||||||||..|. +||||++|||++||+++..      +.+++|+|++|+      ++.
T Consensus       344 PsfrIIRgDITk~~------vDAIVNAANtsL~-gGgGVdGAIhraaG~~ll~------~~~~tG~AkIT~------g~a  404 (670)
T 4gua_A          344 PSYRTKRENIADCQ------EEAVVNAANPLGR-PGEGVCRAIYKRWPTSFTD------SATETGTARMTV------CLG  404 (670)
T ss_dssp             CCEEEECSCGGGCC------SSEEEEECCTTCC-CCSSHHHHHHHHCGGGGTT------CCCCTTCEEEEE------ETT
T ss_pred             cceeEEeccccccc------cCEEEeCCCCCCC-CcCCHhHHHHHHhhHHHhc------CCCCcceEEEec------CCC
Confidence            47999999999998      9999999999999 8999999999999998876      569999999999      232


Q ss_pred             CCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCc
Q 006654          423 REGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNE  483 (636)
Q Consensus       423 ~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~  483 (636)
                          +||||+|||+|++...       .+..++|++||+++|++|     .|||||.|++|.+..+
T Consensus       405 ----KyIIHtVGPvw~~g~~-------~E~~~lLascYrnsLkLA~e~~~kSIAFPLISTGIYG~P  459 (670)
T 4gua_A          405 ----KKVIHAVGPDFRKHPE-------AEALKLLQNAYHAVADLVNEHNIKSVAIPLLSTGIYAAG  459 (670)
T ss_dssp             ----EEEEEECCCCTTSSCH-------HHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSSTTTT
T ss_pred             ----ceEEEcCCCCccCCCC-------chHHHHHHHHHHHHHHHHHHcCCcEEEEccccccCCCCC
Confidence                9999999999987642       234579999999999987     4999999999988776

>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A*

Probab=99.73  E-value=3.5e-18  Score=161.09  Aligned_cols=113  Identities=11%  Similarity=0.108  Sum_probs=93.8

Q ss_pred             CCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCcEEEecCCCCCCC
Q 006654          341 NPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPL  420 (636)
Q Consensus       341 ~~~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~~~~~~G~avvT~l~~~~~~  420 (636)
                      ++.+|++++||||+..     .+|+|||+||..|. +||||++||++++| ++ .+|.+  +.+++|++++|+.      
T Consensus         7 ~~~~i~~v~GDIt~~~-----~~daIVnaaN~~~~-~G~Gva~ai~~~~p-~~-~~~~~--~~~~~G~a~it~~------   70 (149)
T 2eee_A            7 GGSRITYVKGDLFACP-----KTDSLAHCISEDCR-MGAGIAVLFKKKFG-GV-QELLN--QQKKSGEVAVLKR------   70 (149)
T ss_dssp             SSCCCEEECSCSSSSC-----SSCEEEEEEETTCC-CCSTTHHHHHHHTC-CH-HHHHT--TCCCTTCEEEEES------
T ss_pred             CCeeEEEEecccccCC-----CCcEEEEEeCCCCC-cCCcHHHHHHHHCc-HH-HHHhc--ccCCCccEEEEEc------
Confidence            4578999999999985     26999999999999 99999999999995 45 56765  6799999999983      


Q ss_pred             CCCCCccEEEEecCCC-CCCCCCCCCCCCccchHHHHHHHHHHHHHhHH-----HhhccccCCCCCCCc
Q 006654          421 CGREGVTHVIHVLGPN-MNPRRPNCLDGDYVKGCEILRKAYTSLFEGFL-----SIVRSQEKLSKGCNE  483 (636)
Q Consensus       421 ~~~l~~k~VIH~VgP~-~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~-----siaf~~~~~~~~~~~  483 (636)
                          +.++|||++||. |.. .+         ..+.|++||+++|+.+.     |||||+||.+.+-.+
T Consensus        71 ----~~~~Vih~v~~~~~~~-~~---------~~~~l~~~l~~~l~~a~~~~~~sIa~P~IgtG~~G~~  125 (149)
T 2eee_A           71 ----DGRYIYYLITKKRASH-KP---------TYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQ  125 (149)
T ss_dssp             ----SSSEEEEEEEESSTTS-CC---------CHHHHHHHHHHHHHHHHHHTCCEEECCCCCCTTTTCC
T ss_pred             ----CCCEEEEEEecCCCCC-CC---------CHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCC
Confidence                238999999998 644 32         26899999999999764     999999998865443

>2fg1_A Conserved hypothetical protein BT1257; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.25A {Bacteroides thetaiotaomicron} SCOP: c.50.1.2 PDB: 2afc_A

Probab=99.70  E-value=1.8e-17  Score=157.63  Aligned_cols=123  Identities=15%  Similarity=0.045  Sum_probs=94.9

Q ss_pred             CeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHh---cCCCCCCcEEEecCCCCC
Q 006654          342 PKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAER---AKSLYPGNSVIVPLPSTS  418 (636)
Q Consensus       342 ~~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~---~~~~~~G~avvT~l~~~~  418 (636)
                      .+.|++++||||+..   ...+|+|||+||..+. +||||++||++++ |++++++++.   .+.+++|++++|+.    
T Consensus         3 ~M~i~~v~GDit~~~---~~~~daIvn~~N~~~~-~G~Gva~ai~~~~-p~~~~~~~~~~~~~~~~~~G~~~i~~~----   73 (158)
T 2fg1_A            3 AMEILYIKGDATAPI---GSGVKVITHICNDIGG-WGKGFVLALSKKW-KMPEEAYRQWYKSQEEFTLGAVQFVNV----   73 (158)
T ss_dssp             CCCCEEEESCTTSCC---SSSCEEEEEEEETTCC-CCSTHHHHHHHHC-SHHHHHHHHHHHHTSSCSTTCEEEEEE----
T ss_pred             ceEEEEEecccCCCC---CCCCeEEEEEecCCCC-cCccHHHHHHHHC-ChHHHHHHHHHhhccCcCCccEEEEec----
Confidence            357899999999931   0127999999999999 9999999999999 6777776653   25799999999982    


Q ss_pred             CCCCCCCccEEEEecCCC-CCCCCCCCCCCCccchHHHHHHHHHHHHHhHH----HhhccccCCCCCCC
Q 006654          419 PLCGREGVTHVIHVLGPN-MNPRRPNCLDGDYVKGCEILRKAYTSLFEGFL----SIVRSQEKLSKGCN  482 (636)
Q Consensus       419 ~~~~~l~~k~VIH~VgP~-~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~----siaf~~~~~~~~~~  482 (636)
                        ++   .++|||++||. |......    ......+.|++||+++++.+.    |||||.||.+.+-.
T Consensus        74 --~~---~~~Vi~~v~~~~~~~~~~~----~~~~~~~~l~~~l~~~~~~a~~~~~sIa~P~Ig~G~~G~  133 (158)
T 2fg1_A           74 --EN---KLYVANMIGQHGIYKDSKG----LPPIRYDAVRQCLKEVALFTIAHKASVHMPRIGCGLAGG  133 (158)
T ss_dssp             --ET---TEEEEEEEEESSSSCCTTC----CCSBCHHHHHHHHHHHHHHHHHHTCEEEECCTTCSTTCC
T ss_pred             --CC---CeEEEEEEEEcccCCCCCC----CccccHHHHHHHHHHHHHHHHHhCCeEEecCcCCCCCCC
Confidence              11   28999999999 7533210    011247899999999999875    99999999775443

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=99.70  E-value=7e-17  Score=176.06  Aligned_cols=141  Identities=23%  Similarity=0.336  Sum_probs=125.5

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHH
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDF   96 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn~~~~~R~~l   96 (636)
                      .++|.+|+|+|+|||||||+|++|++.++  +.+|+.|.++     .+..+...+.+.+..|..||+|++|+...+|..+
T Consensus       255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~--~~~i~~D~~~-----~~~~~~~~~~~~l~~g~~vIiD~~~~~~~~r~~~  327 (416)
T 3zvl_A          255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAG--YVHVNRDTLG-----SWQRCVSSCQAALRQGKRVVIDNTNPDVPSRARY  327 (416)
T ss_dssp             CSSCCEEEEESCTTSSHHHHHHHHTGGGT--CEECCGGGSC-----SHHHHHHHHHHHHHTTCCEEEESCCCSHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHhcC--cEEEccchHH-----HHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHH
Confidence            45688999999999999999999999988  8899999983     5666778888999999999999999999999999


Q ss_pred             HHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCccEEEEeCC
Q 006654           97 VKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQN  165 (636)
Q Consensus        97 ~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd~Viii~~  165 (636)
                      .++ +..++.+.+|+|++|.++|.+|+..|..+.. ....++++++++|.+.|++|...|+|+.|+.++-
T Consensus       328 ~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~~~~-~~~~~~~~~~~~~~~~~e~P~~~E~fd~v~~v~~  396 (416)
T 3zvl_A          328 IQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDP-SHAPVSDMVMFSYRKQFEPPTLAEGFLEILEIPF  396 (416)
T ss_dssp             HHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHHCT-TCCCCCHHHHHHHHHHCCCCCGGGTCSEEEEECC
T ss_pred             HHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcccCC-CcCCCCHHHHHHHHHhcCCCCcccCCcEEEEEec
Confidence            999 8888888999999999999999999987533 2346889999999999999999999999988764

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=99.67  E-value=1.2e-16  Score=151.51  Aligned_cols=129  Identities=22%  Similarity=0.281  Sum_probs=103.3

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHH-HcCCCeEEeehhhhcCCC----------CCcH------HHHHHHHHHHH---hCC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMR-SSARPWARICQDTINKGK----------SGTK------VQCLTSASSAL---KKG   78 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak-~~~~~~~~Is~D~ir~~~----------~~~~------~~~~~~~~~~L---~~G   78 (636)
                      ||.+|+|+|+|||||||+|+.|++ .++  +.+++.|.++...          ....      ..+...+...+   ..|
T Consensus         1 M~~~I~i~G~~GsGKST~a~~L~~~~~~--~~~i~~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g   78 (181)
T 1ly1_A            1 MKKIILTIGCPGSGKSTWAREFIAKNPG--FYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSV   78 (181)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHSTT--EEEECHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSC
T ss_pred             CCeEEEEecCCCCCHHHHHHHHHhhcCC--cEEecHHHHHHHhhCCCccchhhhchhhhhHHHHHHHHHHHHHHhhccCC
Confidence            578999999999999999999998 565  8889998885321          1111      11235566777   789


Q ss_pred             CeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccC
Q 006654           79 KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSE  155 (636)
Q Consensus        79 ~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~E  155 (636)
                      ..||+|++++...+|..|.++ ...++.+.+|+|++|.++|.+|+..|..+      .++.+.+.++++.|+.|...+
T Consensus        79 ~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~------~~~~~~i~~~~~~~~~~~~~~  150 (181)
T 1ly1_A           79 KGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTK------AVPIDVLRSMYKSMREYLGLP  150 (181)
T ss_dssp             CEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGGG------CCCHHHHHHHHHHHHHHHTCC
T ss_pred             CeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhccccC------CCCHHHHHHHHHHhhccCCCC
Confidence            999999999999999999888 66777778899999999999999999864      467889999999988875433

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=99.58  E-value=8.5e-15  Score=151.34  Aligned_cols=180  Identities=19%  Similarity=0.253  Sum_probs=123.9

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc-CCCeEEeehhhhcCC-------C---CCc-H-----HHHHHHHHHHH---hCC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS-ARPWARICQDTINKG-------K---SGT-K-----VQCLTSASSAL---KKG   78 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~-~~~~~~Is~D~ir~~-------~---~~~-~-----~~~~~~~~~~L---~~G   78 (636)
                      ||.+|+|+|+|||||||+|+.|++.+ +  +.+++.|.++..       +   ... .     ..+...+...+   ..|
T Consensus         1 M~~~I~l~G~~GsGKST~a~~L~~~~~~--~~~i~~D~~r~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g   78 (301)
T 1ltq_A            1 MKKIILTIGCPGSGKSTWAREFIAKNPG--FYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSV   78 (301)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHSTT--EEEECHHHHHHHHTTSCCCC---CCHHHHHHHHHHHHHHHHHHTTSCTTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhCCC--cEEecccHHHHHhccCCcccccccchhhhhHHHHHHHHHHHHHHhhccCC
Confidence            57899999999999999999999875 5  788999987532       1   111 0     11235566777   788


Q ss_pred             CeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCc
Q 006654           79 KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGF  157 (636)
Q Consensus        79 ~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egf  157 (636)
                      ..||+|++++...+|..|.++ ...++.+.+|+|++|.+++.+|+..|..|      .++.+.++++++.|+.+...+.|
T Consensus        79 ~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~------~~~~e~i~~~~~~~~~~~~~~~~  152 (301)
T 1ltq_A           79 KGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTK------AVPIDVLRSMYKSMREYLGLPVY  152 (301)
T ss_dssp             CEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGGG------CCCHHHHHHHHHHHHHHHTCCCC
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccCC------CCCHHHHHHHHHHHhcccCCcce
Confidence            999999999999999999888 77788888999999999999999999875      46788999998888765432211


Q ss_pred             ------cEEEEeCChhHHHHHHHHhccCCCCcccCCCccCCCCCchhhHHHHHHHHhhcCCCC
Q 006654          158 ------SRITLCQNENDVQAALDTYSGLGPLDTLPHGSFGQKNPDAKIQLGIMKFLKKVDAPS  214 (636)
Q Consensus       158 ------d~Viii~~~~~vdaiv~~~~~Lgpfd~~phgc~~~~~~~~~v~~~i~k~l~~~g~~~  214 (636)
                            ....+++.+.....    .....|+++.+  |... .+-.-+ .++.+.|++.|+.-
T Consensus       153 ~~~~~~~~~i~iD~dgtl~~----~~~~~~~~~~~--~~~~-~~~~g~-~e~L~~L~~~g~~~  207 (301)
T 1ltq_A          153 NGTPGKPKAVIFDVDGTLAK----MNGRGPYDLEK--CDTD-VINPMV-VELSKMYALMGYQI  207 (301)
T ss_dssp             CCCTTSCEEEEEETBTTTBC----CSSCCTTCGGG--GGGC-CBCHHH-HHHHHHHHHTTCEE
T ss_pred             eccccccceEEEeCCCCccc----ccCCCchhhhh--cccc-CCChHH-HHHHHHHHHCCCeE
Confidence                  12333333222211    12234554443  4432 333333 46667777777754

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=99.55  E-value=5.2e-14  Score=140.54  Aligned_cols=169  Identities=17%  Similarity=0.199  Sum_probs=107.7

Q ss_pred             cccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh-hhhcCC------------------CCCcHHHHHHHHHHHH
Q 006654           15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINKG------------------KSGTKVQCLTSASSAL   75 (636)
Q Consensus        15 ~~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~-D~ir~~------------------~~~~~~~~~~~~~~~L   75 (636)
                      +...+|.+|+|+|||||||||+|+.|++.++  +.||++ |.+|..                  ...+.+.+...+.++|
T Consensus        24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g--~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l  101 (217)
T 3umf_A           24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH--FNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAM  101 (217)
T ss_dssp             CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC--CEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred             hhccCCcEEEEECCCCCCHHHHHHHHHHHHC--CceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence            4456788999999999999999999999999  889997 555532                  1123334445555555


Q ss_pred             h----CCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcC
Q 006654           76 K----KGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKEL  150 (636)
Q Consensus        76 ~----~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~  150 (636)
                      .    ..++||+|+++++..|...|... ....   .+++|++|++++.+|+..|....+ +.++ .++++++-.+.|. 
T Consensus       102 ~~~~~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~---~vi~l~v~~e~~~~Rl~~R~~~~~-R~DD-~~e~i~~Rl~~Y~-  175 (217)
T 3umf_A          102 IKLVDKNCHFLIDGYPRELDQGIKFEKEVCPCL---CVINFDVSEEVMRKRLLKRAETSN-RVDD-NEETIVKRFRTFN-  175 (217)
T ss_dssp             HHHTTTCSEEEEETBCSSHHHHHHHHHHTCCCS---EEEEEECCHHHHHHHHSCC-------CHH-HHHHHHHHHHHHH-
T ss_pred             hhccccccCcccccCCCcHHHHHHHHHhCCccC---EEEeccCCHHHHHHHHhcccccCC-CCCC-CHHHHHHHHHHHH-
Confidence            2    45689999999999999988776 5444   488999999999999999975332 2222 2333333222221 


Q ss_pred             CCccCCccEEEEeCChhHHHHHHHHhccCCCCcccCCCccCCCCCchhhHHHHHHHHhhcCC
Q 006654          151 PKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFGQKNPDAKIQLGIMKFLKKVDA  212 (636)
Q Consensus       151 P~~~Egfd~Viii~~~~~vdaiv~~~~~Lgpfd~~phgc~~~~~~~~~v~~~i~k~l~~~g~  212 (636)
                                      ++...+++-|...|-+    +.+.++ .....|+.+|.+.|++.|.
T Consensus       176 ----------------~~t~pl~~~Y~~~~~l----~~Idg~-~~~eeV~~~I~~~l~k~G~  216 (217)
T 3umf_A          176 ----------------ELTKPVIEHYKQQNKV----ITIDAS-GTVDAIFDKVNHELQKFGV  216 (217)
T ss_dssp             ----------------HHTHHHHHHHHTTTCE----EEEETT-SCHHHHHHHHHHHHHTTTC
T ss_pred             ----------------HHHHHHHHHHHhcCCE----EEEECC-CCHHHHHHHHHHHHHHcCC
Confidence                            1112233334443433    123334 5667777888888877653

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=99.54  E-value=8.7e-14  Score=141.86  Aligned_cols=127  Identities=24%  Similarity=0.311  Sum_probs=100.3

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH---cCCCeEEeehhhhcCCCCC---cHH-----HHHHHHHHHHhCCCeEEEeCCC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQDTINKGKSG---TKV-----QCLTSASSALKKGKSVFLDRCN   87 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~---~~~~~~~Is~D~ir~~~~~---~~~-----~~~~~~~~~L~~G~~VIID~tn   87 (636)
                      ++.+|+|+|+|||||||+|+.|++.   .+..+.+++.|.++....+   ...     .....+...+.. ..||+|+++
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~~~~~~e~~~~~~~~~~i~~~l~~-~~vIiD~~~   81 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYRLIDSALKN-YWVIVDDTN   81 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSSCCGGGHHHHHHHHHHHHHHHHTT-SEEEECSCC
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhC-CEEEEeCCc
Confidence            4678999999999999999999987   5644555699998754322   111     122445566666 889999999


Q ss_pred             CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCc
Q 006654           88 LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKL  153 (636)
Q Consensus        88 ~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~  153 (636)
                      +....|..|..+ ...+.+..+|+|++|.++|.+|+..|..       ..+.+.++++...|+.|..
T Consensus        82 ~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~-------~~~~~~l~~~~~~~e~~~~  141 (260)
T 3a4m_A           82 YYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGE-------KIPNEVIKKMYEKFDEPGK  141 (260)
T ss_dssp             CSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTC-------SSCHHHHHHHHHHCCCTTS
T ss_pred             ccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCC-------CCCHHHHHHHHHHhcCccc
Confidence            999999999888 7777788899999999999999999863       3567889999999988764

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=99.53  E-value=4.1e-14  Score=140.14  Aligned_cols=172  Identities=15%  Similarity=0.259  Sum_probs=119.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh-hhhcC------------------CCCCcHHHHHHHHHHHHhCCCeEE
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINK------------------GKSGTKVQCLTSASSALKKGKSVF   82 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~-D~ir~------------------~~~~~~~~~~~~~~~~L~~G~~VI   82 (636)
                      +|+|.|||||||||+|+.|+++++  +.||++ |.+|+                  +...+.+.+...+.++|....+||
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g--~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~~~~~i   79 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKG--FVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKHGNVI   79 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSSSCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC--CeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhccCCceE
Confidence            588999999999999999999999  889997 55542                  222244556678888888888899


Q ss_pred             EeCCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCccEE
Q 006654           83 LDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRI  160 (636)
Q Consensus        83 ID~tn~~~~~R~~l~~l-~~~g~~v-~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd~V  160 (636)
                      +|+++++..|...|..+ ...+..+ .+++|++|.+++.+|+..|..++..         .+.++..+.+|...+.    
T Consensus        80 lDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~---------g~~y~~~~~pp~~g~~----  146 (206)
T 3sr0_A           80 FDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPET---------GEVYHVKYNPPPPGVK----  146 (206)
T ss_dssp             EESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTT---------CCEEETTTBCCCTTCC----
T ss_pred             ecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCC---------CceeeeeccCCCCCce----
Confidence            99999999999998777 5555555 6889999999999999999876432         1112334555542211    


Q ss_pred             EEeCChhHHHHHHHH---hc-cCCCC-c---ccC--CCccCCCCCchhhHHHHHHHHhh
Q 006654          161 TLCQNENDVQAALDT---YS-GLGPL-D---TLP--HGSFGQKNPDAKIQLGIMKFLKK  209 (636)
Q Consensus       161 iii~~~~~vdaiv~~---~~-~Lgpf-d---~~p--hgc~~~~~~~~~v~~~i~k~l~~  209 (636)
                      ...+.++..+.+.++   |+ ...|+ +   ..+  +...++ .....|+.+|.+.|..
T Consensus       147 l~~r~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~-~~~~eV~~~I~~~l~e  204 (206)
T 3sr0_A          147 VIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDAS-KPVEEVYRQVLEVIGD  204 (206)
T ss_dssp             CBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETT-SCHHHHHHHHHHHHC-
T ss_pred             ecccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECC-CCHHHHHHHHHHHHcc
Confidence            133455555555554   32 33443 1   112  334445 6778888999988853

>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens}

Probab=99.46  E-value=1.2e-14  Score=145.05  Aligned_cols=131  Identities=15%  Similarity=0.185  Sum_probs=103.1

Q ss_pred             HHHHHHHHhc-cCCCCcccCCCccCCCCCchhhHHHHHHHHhhcC--CCCCCCCCCcccCCCCCCcccccccccccCcce
Q 006654          168 DVQAALDTYS-GLGPLDTLPHGSFGQKNPDAKIQLGIMKFLKKVD--APSNTGSTASSTQDPVPPQITEEKNSCLEGQEI  244 (636)
Q Consensus       168 ~vdaiv~~~~-~Lgpfd~~phgc~~~~~~~~~v~~~i~k~l~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (636)
                      ++|+++++.+ .|.    .++|+.+. +++.++|.+|++.+++.+  ...++|. ++        .|.++++.|.++-|.
T Consensus        52 ~vDAIVNaAN~~l~----~~gGGV~~-AI~~aaG~~L~~ec~~~~~~~~~~~G~-a~--------iT~g~~Lp~k~VIHt  117 (221)
T 3q71_A           52 KTDVVVNSVPLDLV----LSRGPLSK-SLLEKAGPELQEELDTVGQGVAVSMGT-VL--------KTSSWNLDCRYVLHV  117 (221)
T ss_dssp             CSSEEEEECCTTCC----TTSSHHHH-HHHHHHCTHHHHHHHHHHHTSCCCTTC-EE--------EEECTTSSSSEEEEE
T ss_pred             cCCEEEECCCCCCC----CCCchHHH-HHHHHHhHHHHHHHHHHhccCCCCCCe-EE--------EEcCCCCCCCEEEEe
Confidence            4566665532 221    12467777 899999999998887753  2445664 22        356678888899998


Q ss_pred             ecccccccchhhcccCChhhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcC
Q 006654          245 TSLLSDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG  312 (636)
Q Consensus       245 ~~~~~~~~~~~~~~~l~~~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~  312 (636)
                      +-|.|........+.|..||.+||.+|++++++|||||+||||+||||.++||+|++++|++|+++++
T Consensus       118 VgP~~~~~~~~~~~~L~~~y~~~L~~A~e~~i~SIAfPaIsTG~~G~P~~~aA~i~~~~v~~fl~~~~  185 (221)
T 3q71_A          118 VAPEWRNGSTSSLKIMEDIIRECMEITESLSLKSIAFPAIGTGNLGFPKNIFAELIISEVFKFSSKNQ  185 (221)
T ss_dssp             CCCCCTTTCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTSSTTCCCHHHHHHHHHHHHHHHHHHCC
T ss_pred             CCCCCcCCCchHHHHHHHHHHHHHHHHHHhCCceEeeccccCCCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence            88888754444567899999999999999999999999999999999999999999999999999873

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=99.44  E-value=1.8e-12  Score=126.17  Aligned_cols=125  Identities=19%  Similarity=0.227  Sum_probs=95.1

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC---------CCCc---HHHHHHHHHHHHhCCCeEEEeC
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG---------KSGT---KVQCLTSASSALKKGKSVFLDR   85 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~---------~~~~---~~~~~~~~~~~L~~G~~VIID~   85 (636)
                      .++.+|+|+|+|||||||+|+.|++.++  +.+++.|.+...         ....   ....+..+...+..|..+|+|+
T Consensus        16 ~~~~~I~l~G~~GsGKSTla~~L~~~lg--~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~vivd~   93 (202)
T 3t61_A           16 RFPGSIVVMGVSGSGKSSVGEAIAEACG--YPFIEGDALHPPENIRKMSEGIPLTDDDRWPWLAAIGERLASREPVVVSC   93 (202)
T ss_dssp             CCSSCEEEECSTTSCHHHHHHHHHHHHT--CCEEEGGGGCCHHHHHHHHHTCCCCHHHHHHHHHHHHHHHTSSSCCEEEC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC--CEEEeCCcCcchhhHHHHhcCCCCCchhhHHHHHHHHHHHhcCCCEEEEC
Confidence            4567899999999999999999999998  667888887421         1111   1123455566667888999999


Q ss_pred             CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCC
Q 006654           86 CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPK  152 (636)
Q Consensus        86 tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~  152 (636)
                      +++....|..+..+.  +.+..+|+|++|.+++.+|+..|..+      ..+.+.++++.+.++++.
T Consensus        94 ~~~~~~~~~~l~~~~--~~~~~vi~l~~~~e~~~~Rl~~R~~~------~~~~~~~~~~~~~~~~~~  152 (202)
T 3t61_A           94 SALKRSYRDKLRESA--PGGLAFVFLHGSESVLAERMHHRTGH------FMPSSLLQTQLETLEDPR  152 (202)
T ss_dssp             CCCSHHHHHHHHHTS--TTCCEEEEEECCHHHHHHHHHHHHSS------CCCHHHHHHHHHHCCCCT
T ss_pred             CCCCHHHHHHHHHhc--CCCeEEEEEeCCHHHHHHHHHHhhcc------CCCHHHHHHHHHhcCCCC
Confidence            999888888776652  22346889999999999999999764      234788888888887764

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=99.37  E-value=4.2e-12  Score=131.61  Aligned_cols=149  Identities=13%  Similarity=0.146  Sum_probs=104.4

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC---------c--------H-HH-HHHHHHHHHhC
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG---------T--------K-VQ-CLTSASSALKK   77 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~---------~--------~-~~-~~~~~~~~L~~   77 (636)
                      ..+|.+|+|+|+|||||||+|+.|++.++..+.+|+.|.++....+         .        + .. ....+.+.+..
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~l~~  109 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQ  109 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTSTTHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHhchhhHHHHHHccchhhhhhhHHHHHHHHHHHHHHHhc
Confidence            3468999999999999999999999988544788999988754321         0        0 01 12445667788


Q ss_pred             CCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHH----HHHHHhcccccCCCCCCChHHHHH----HHHhhh
Q 006654           78 GKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLC----ISRSVKRIEHEGNLQGGKAAAVVN----RMLQKK  148 (636)
Q Consensus        78 G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l----~~R~~~R~~~~~~~~~~vp~evi~----rm~~~f  148 (636)
                      |.+||+|+++....++..+.++ ++.|+.+.+++|.+|.+++    .+|+..|..+.+.....++.+...    ++...+
T Consensus       110 g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~~~g~l~~R~~~~e~~~~i~~rl~~a~  189 (287)
T 1gvn_B          110 GYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNL  189 (287)
T ss_dssp             TCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHHHHHCTTTCCCCCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            9999999999988888888888 8888888889999999999    888887765432111245444443    333333


Q ss_pred             cCCCccCCccEEEEeCC
Q 006654          149 ELPKLSEGFSRITLCQN  165 (636)
Q Consensus       149 e~P~~~Egfd~Viii~~  165 (636)
                      ++......|+.+++.+.
T Consensus       190 ~el~~~~~~d~v~v~d~  206 (287)
T 1gvn_B          190 ETLHKTGLFSDIRLYNR  206 (287)
T ss_dssp             HHHHHHTCCSCEEEECT
T ss_pred             HHHHcCCCCCeEEEEeC
Confidence            32222344677766654

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=99.37  E-value=2.6e-11  Score=115.00  Aligned_cols=122  Identities=16%  Similarity=0.157  Sum_probs=86.1

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC---------CCCCcH-------HHHHHHHHHHHhCCCeEE
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------GKSGTK-------VQCLTSASSALKKGKSVF   82 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~---------~~~~~~-------~~~~~~~~~~L~~G~~VI   82 (636)
                      +..+|+|+|+|||||||+++.|+..++  +.+++.|.+..         +.....       ..+...+...+..|..+|
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g--~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   84 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAHQLH--AAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSL   84 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHT--CEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHCSEEE
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHhhC--cEEEeCccccchHHHHHhhcCcCCCccccccHHHHHHHHHHHHHhcCCcEE
Confidence            457899999999999999999999887  77889888742         111111       112233444556688999


Q ss_pred             EeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCC
Q 006654           83 LDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELP  151 (636)
Q Consensus        83 ID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P  151 (636)
                      +|...+....|..+   ++.+..+.+|+|++|.+++.+|+..|..+.      .....+..+...+++|
T Consensus        85 i~~~~~~~~~~~~l---~~~~~~~~vv~l~~~~e~~~~R~~~R~~~~------~~~~~~~~~~~~~~~~  144 (175)
T 1knq_A           85 IVCSALKKHYRDLL---REGNPNLSFIYLKGDFDVIESRLKARKGHF------FKTQMLVTQFETLQEP  144 (175)
T ss_dssp             EECCCCSHHHHHHH---HTTCTTEEEEEEECCHHHHHHHHHTSTTCC------CCHHHHHHHHHHCCCC
T ss_pred             EEeCchHHHHHHHH---HhcCCCEEEEEEECCHHHHHHHHHhccCCC------CchHHHHHHHHhhhCc
Confidence            99877777666555   333345678999999999999999997542      2355666666666665

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=99.37  E-value=2.7e-12  Score=123.04  Aligned_cols=108  Identities=16%  Similarity=0.203  Sum_probs=78.8

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC------CCC-cHH---------HHHHHHHHHHhCCCeE
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG------KSG-TKV---------QCLTSASSALKKGKSV   81 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~------~~~-~~~---------~~~~~~~~~L~~G~~V   81 (636)
                      .++.+|+|+|+|||||||+|+.|++.++  +.+++.|.++..      ... .+.         .+...+...+..|..|
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~--~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v   80 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGLR--LPLLSKDAFKEVMFDGLGWSDREWSRRVGATAIMMLYHTAATILQSGQSL   80 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHHT--CCEEEHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcC--CeEecHHHHHHHHHHhcCccchHHHHHhhHHHHHHHHHHHHHHHhCCCeE
Confidence            4678999999999999999999999988  567888887532      111 111         1113345567789999


Q ss_pred             EEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           82 FLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        82 IID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      |+|+++.....+..|..+ ...+.+..+|+|++|.+++.+|+..|..
T Consensus        81 i~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~  127 (193)
T 2rhm_A           81 IMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIA  127 (193)
T ss_dssp             EEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHH
T ss_pred             EEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcC
Confidence            999988322233456556 4455667889999999999999999875

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=99.36  E-value=8.9e-12  Score=119.21  Aligned_cols=107  Identities=18%  Similarity=0.349  Sum_probs=76.3

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC--------------------CCCcHHHH----HHHHH--
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG--------------------KSGTKVQC----LTSAS--   72 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~--------------------~~~~~~~~----~~~~~--   72 (636)
                      +|.+|+|+|+|||||||+|+.|++.++  +.+++.|.+...                    ........    ...+.  
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~--~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~   79 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKYG--YTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQT   79 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhC--CeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhh
Confidence            467899999999999999999999998  677888765211                    11111111    11111  


Q ss_pred             -HHHhCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           73 -SALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        73 -~~L~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                       ..+..+..||+|+++++..++..|... ......-.+|+|++|.+++.+|+..|..
T Consensus        80 ~~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~  136 (196)
T 1tev_A           80 MAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGK  136 (196)
T ss_dssp             HHHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred             hccccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccc
Confidence             223357889999999999988888766 4432223688999999999999999865

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=99.35  E-value=1.4e-11  Score=117.58  Aligned_cols=126  Identities=20%  Similarity=0.353  Sum_probs=85.7

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC-------------------CCCcHHHHHHHHHHHHh--
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG-------------------KSGTKVQCLTSASSALK--   76 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~-------------------~~~~~~~~~~~~~~~L~--   76 (636)
                      .|+.+|+|+|+|||||||+|+.|++.++  +.+++.|.+...                   ...........+.+.+.  
T Consensus         4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~--~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~   81 (194)
T 1qf9_A            4 SKPNVVFVLGGPGSGKGTQCANIVRDFG--WVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDAN   81 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTS
T ss_pred             CcCcEEEEECCCCCCHHHHHHHHHHHhC--CeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc
Confidence            4678999999999999999999999988  778888665211                   00111222233334443  


Q ss_pred             CCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHh
Q 006654           77 KGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ  146 (636)
Q Consensus        77 ~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~  146 (636)
                      .+..+|+|+++....++..|... ......-.+|+|++|.+++.+|+..|..... +.+...+.+.+++..
T Consensus        82 ~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~-r~~~~~~~~~~ri~~  151 (194)
T 1qf9_A           82 QGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSG-RSDDNIESIKKRFNT  151 (194)
T ss_dssp             TTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSC-CTTCSHHHHHHHHHH
T ss_pred             CCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCC-CCCCCHHHHHHHHHH
Confidence            56789999999998888888766 4322223588999999999999999865322 222334455444443

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=99.35  E-value=5.5e-12  Score=127.30  Aligned_cols=111  Identities=23%  Similarity=0.343  Sum_probs=84.5

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-cC------------------CCCCcHHHHHHHHHHHHhC
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALKK   77 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r~------------------~~~~~~~~~~~~~~~~L~~   77 (636)
                      ..+|.+|+|.|+|||||||+|+.|++.++  +.+++.|.+ +.                  +...........+...+..
T Consensus        26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~g--~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~  103 (243)
T 3tlx_A           26 SKPDGRYIFLGAPGSGKGTQSLNLKKSHC--YCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKT  103 (243)
T ss_dssp             TSCCEEEEEECCTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTS
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHhC--CeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Confidence            45788999999999999999999999998  778887554 22                  1122333344556666654


Q ss_pred             ---CCeEEEeCCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhccccc
Q 006654           78 ---GKSVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEHE  129 (636)
Q Consensus        78 ---G~~VIID~tn~~~~~R~~l~~l-~~~g~~v-~vV~Ld~p~e~l~~R~~~R~~~~  129 (636)
                         +..+|+|+++.+..+...|..+ ...+..+ .+++|++|.+++++|+..|..++
T Consensus       104 ~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~  160 (243)
T 3tlx_A          104 PQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHK  160 (243)
T ss_dssp             GGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEET
T ss_pred             ccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCc
Confidence               7789999999999888888776 4444333 68899999999999999998654

>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2

Probab=99.35  E-value=2.3e-13  Score=132.56  Aligned_cols=115  Identities=13%  Similarity=0.147  Sum_probs=91.7

Q ss_pred             CccCCCCCchhhHHHHHHHHhhc----CCCCCCCCCCcccCCCCCCcccccccccccCcceecccccccchhhcccCChh
Q 006654          188 GSFGQKNPDAKIQLGIMKFLKKV----DAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPE  263 (636)
Q Consensus       188 gc~~~~~~~~~v~~~i~k~l~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  263 (636)
                      |+.+. +++..+|.+|.+-+++.    | ..++|. ++        .|.+.++.|.++-|.+-+.|...+....+.|..|
T Consensus        32 gGv~~-aI~~aaG~~l~~e~~~~~~~~g-~~~~G~-a~--------iT~~~~L~~k~VIH~vgP~~~~~~~~~~~~L~~~  100 (184)
T 1spv_A           32 GGVDG-AIHRAAGPALLDACLKVRQQQG-DCPTGH-AV--------ITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDA  100 (184)
T ss_dssp             SHHHH-HHHHHHCHHHHHHHHHHHHHHC-SCCTTC-EE--------EECCTTSSSSEEEEECCCCCSSSSSSHHHHHHHH
T ss_pred             chHHH-HHHHHhCHHHHHHHHHHHHhcC-CCCCCC-EE--------EeeCCCCCCCEEEEEcCCcccCCCcchHHHHHHH
Confidence            55656 88999999998777654    4 445664 11        2445566777788877777754334456788999


Q ss_pred             hhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCC
Q 006654          264 VASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGN  313 (636)
Q Consensus       264 ~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~~  313 (636)
                      |.+||.+|.+++++|||||+||||+||||.++||+|+++++++|+++++.
T Consensus       101 y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~~~~  150 (184)
T 1spv_A          101 YLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHAL  150 (184)
T ss_dssp             HHHHHHHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHhCCceEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999998754

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=99.34  E-value=2.4e-11  Score=115.24  Aligned_cols=108  Identities=17%  Similarity=0.267  Sum_probs=78.4

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCC--------------------C-cHHHH----HHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS--------------------G-TKVQC----LTSASS   73 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~--------------------~-~~~~~----~~~~~~   73 (636)
                      ++.+|+|+|+|||||||+|+.|++.++.++.+++.|.++....                    . .+...    ...+..
T Consensus         2 ~~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (178)
T 1qhx_A            2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVA   81 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHHHHH
Confidence            4578999999999999999999999987777778876632100                    0 01121    233556


Q ss_pred             HHhCCCeEEEeCCCCC-HHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654           74 ALKKGKSVFLDRCNLE-REQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (636)
Q Consensus        74 ~L~~G~~VIID~tn~~-~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~  128 (636)
                      .+..|..||+|+..+. ...+..+.++ ...  .+.+|+|++|.+++.+|+..|..+
T Consensus        82 ~~~~g~~vi~~~~~~~~~~~~~~~~~~~~~~--~~~~v~l~~~~e~l~~R~~~r~~~  136 (178)
T 1qhx_A           82 MARAGARIIIDDVFLGGAAAQERWRSFVGDL--DVLWVGVRCDGAVAEGRETARGDR  136 (178)
T ss_dssp             HHHTTCEEEEEECCTTTHHHHHHHHHHHTTC--CEEEEEEECCHHHHHHHHHHTSSS
T ss_pred             HHhcCCeEEEEeccccChHHHHHHHHHhcCC--cEEEEEEECCHHHHHHHHHhhCCc
Confidence            6678889999997753 4556666666 543  456788999999999999998654

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=99.34  E-value=4.7e-12  Score=128.38  Aligned_cols=113  Identities=13%  Similarity=0.157  Sum_probs=89.5

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCC---------CCc---------HHHH-HHHHHHHHh
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK---------SGT---------KVQC-LTSASSALK   76 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~---------~~~---------~~~~-~~~~~~~L~   76 (636)
                      ...+|.+|+|+|+|||||||+|+.|++.++..+.+++.|.++...         .+.         .... ...+...+.
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  107 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEYGKDSVEYTKDFAGKMVESLVTKLSS  107 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTTSTTHHHHHTTCSSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHhchhHHHHHHHcCchHHHHhhHHHHHHHHHHHHHHHh
Confidence            345688999999999999999999999987557789999986531         111         1111 234445567


Q ss_pred             CCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654           77 KGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (636)
Q Consensus        77 ~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~  128 (636)
                      .|.+||+|+++....++..+.++ +..++.+.++++++|.++|.+|+..|...
T Consensus       108 ~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R~~~  160 (253)
T 2p5t_B          108 LGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIRYEE  160 (253)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHHHHH
Confidence            78899999999888888888888 88888888889999999999999988653

>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens}

Probab=99.33  E-value=3.7e-13  Score=131.98  Aligned_cols=113  Identities=9%  Similarity=0.134  Sum_probs=92.9

Q ss_pred             CCccCCCCCchhhHHHHHHHHhhc----CCCCCCCCCCcccCCCCCCcccccccccccCcceecccccccchhhcccCCh
Q 006654          187 HGSFGQKNPDAKIQLGIMKFLKKV----DAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENP  262 (636)
Q Consensus       187 hgc~~~~~~~~~v~~~i~k~l~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  262 (636)
                      +|+.+. +++.++|.+|++-+++.    | .-++|. ++        .|.+.++.|.++-|.+-+.|..  ....+.|..
T Consensus        50 ggGv~~-aI~~aaG~~l~~ec~~~~~~~g-~~~~G~-a~--------iT~~~~L~~k~VIH~vgP~~~~--~~~~~~L~~  116 (193)
T 2xd7_A           50 KEDIGK-ALEKAGGKEFLETVKELRKSQG-PLEVAE-AA--------VSQSSGLAAKFVIHCHIPQWGS--DKCEEQLEE  116 (193)
T ss_dssp             CSHHHH-HHHHHHHHHHHHHHHHHHHHTC-SCCTTC-EE--------EEECTTSSSSEEEEEECCCTTS--TTHHHHHHH
T ss_pred             ccHHHH-HHHHHhhHHHHHHHHHHHHHcC-CCCCCC-eE--------EeeCCCCCCCEEEEECCCcCCC--cchHHHHHH
Confidence            567767 89999999999777653    3 345554 22        2455677788888888888864  455678899


Q ss_pred             hhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcC
Q 006654          263 EVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG  312 (636)
Q Consensus       263 ~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~  312 (636)
                      ||.+||.+|.+++++|||||+||||+||||.++||+++++++++|+++++
T Consensus       117 ~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~~~  166 (193)
T 2xd7_A          117 TIKNCLSAAEDKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDDSS  166 (193)
T ss_dssp             HHHHHHHHHHHTTCSEEEECCCCCSTTCCCHHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999998853

>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens}

Probab=99.31  E-value=2.4e-13  Score=135.28  Aligned_cols=129  Identities=10%  Similarity=-0.000  Sum_probs=99.5

Q ss_pred             HHHHHHHHhccCCCCcccCCCccCCCCCchhhHHHHHHHHhhc----CCCCCCCCCCcccCCCCCCcccccccccccCcc
Q 006654          168 DVQAALDTYSGLGPLDTLPHGSFGQKNPDAKIQLGIMKFLKKV----DAPSNTGSTASSTQDPVPPQITEEKNSCLEGQE  243 (636)
Q Consensus       168 ~vdaiv~~~~~Lgpfd~~phgc~~~~~~~~~v~~~i~k~l~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (636)
                      ++|++++..+..+    .+.|+.+. +++.++|.+|++.+++.    | .-++|. ++        .|.++++.|.++-|
T Consensus        50 ~vDaIVNaAN~~l----~~ggGV~~-AI~~aaG~~l~~ec~~~~~~~g-~~~~G~-a~--------iT~~~~L~~k~VIH  114 (214)
T 3q6z_A           50 PVDVVVNASNEDL----KHYGGLAA-ALSKAAGPELQADCDQIVKREG-RLLPGN-AT--------ISKAGKLPYHHVIH  114 (214)
T ss_dssp             SSSEEEEEECTTC----CCCSHHHH-HHHHHHCTHHHHHHHHHHHHHC-CCCTTC-EE--------EEECTTSSSSEEEE
T ss_pred             cCCEEEeCCCCCC----CCCchHHH-HHHHhhhHHHHHHHHHHHHHcC-CCCCCe-EE--------EEcCCCCCCCEEEE
Confidence            5666666533111    12467767 89999999999776653    3 334554 22        25567788888889


Q ss_pred             eecccccccc-hhhcccCChhhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhc
Q 006654          244 ITSLLSDAAG-EEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKL  311 (636)
Q Consensus       244 ~~~~~~~~~~-~~~~~~l~~~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~  311 (636)
                      .+-|.|.... .+..+.|..||.+||.+|++++++|||||+||||+||||.++||+++++++++|++++
T Consensus       115 ~VgP~~~~~~~~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IstG~~g~P~~~aA~i~~~av~~fl~~~  183 (214)
T 3q6z_A          115 AVGPRWSGYEAPRCVYLLRRAVQLSLCLAEKYKYRSIAIPAISSGVFGFPLGRCVETIVSAIKENFQFK  183 (214)
T ss_dssp             EECCCCCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHHHHTSSC
T ss_pred             ecCCcccCCCcchHHHHHHHHHHHHHHHHHHcCCcEEEECcccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            8888887532 2346789999999999999999999999999999999999999999999999999876

>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A

Probab=99.30  E-value=4.7e-13  Score=131.25  Aligned_cols=112  Identities=13%  Similarity=0.174  Sum_probs=91.5

Q ss_pred             CCccCCCCCchhhHHHHHHHHhhc----CCCCCCCCCCcccCCCCCCcccccccccccCcceecccccccchhhcccCCh
Q 006654          187 HGSFGQKNPDAKIQLGIMKFLKKV----DAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENP  262 (636)
Q Consensus       187 hgc~~~~~~~~~v~~~i~k~l~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  262 (636)
                      +|+.+. +++.++|.+|++-+++.    | .-++|. ++        .|.+.++.|.++-|.+-|.|..  ....+.|..
T Consensus        47 ggGv~~-aI~~aaG~~l~~ec~~~~~~~g-~~~~G~-a~--------iT~~~~L~~k~VIH~vgP~~~~--~~~~~~L~~  113 (193)
T 1yd9_A           47 GGEVGS-TLEKKGGKEFVEAVLELRKKNG-PLEVAG-AA--------VSAGHGLPAKFVIHCNSPVWGS--DKCEELLEK  113 (193)
T ss_dssp             CSHHHH-HHHHHHHHHHHHHHHHHHHHHC-SCCTTC-EE--------EEECTTSSSSEEEEECCCCTTS--TTHHHHHHH
T ss_pred             CchHHH-HHHHHhhHHHHHHHHHHHHHcC-CCCCCC-EE--------EecCCCCCCCEEEEeCCCCcCC--cchHHHHHH
Confidence            467777 89999999999777653    3 334554 22        2455677778888887777764  555678899


Q ss_pred             hhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhc
Q 006654          263 EVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKL  311 (636)
Q Consensus       263 ~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~  311 (636)
                      ||.+||.+|++++++|||||+||||+||||.++||+++++++++|++++
T Consensus       114 ~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~~  162 (193)
T 1yd9_A          114 TVKNCLALADDRKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVST  162 (193)
T ss_dssp             HHHHHHHHHHHTTCSEEEECCCSBSTTCBCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhCCceEeecccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999875

>4abl_A Poly [ADP-ribose] polymerase 14; transferase, PARP14; 1.15A {Homo sapiens} PDB: 4abk_A

Probab=99.29  E-value=5.1e-13  Score=129.85  Aligned_cols=105  Identities=13%  Similarity=0.147  Sum_probs=85.0

Q ss_pred             CCccCCCCCchhhHHHHHHHHhhcCCCCCCCCCCcccCCCCCCcccccccccccCcceecccccccchhhcccCChhhhh
Q 006654          187 HGSFGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVAS  266 (636)
Q Consensus       187 hgc~~~~~~~~~v~~~i~k~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s  266 (636)
                      +|+.+. +++.++|.+|++-+++.+. .++|. ++        .|.++++.|.++-|.+-+.+          |..||.+
T Consensus        50 ggGV~~-aI~~aaG~~l~~ec~~~~~-~~~G~-a~--------iT~~~~L~~k~VIH~vgP~~----------L~~~y~~  108 (183)
T 4abl_A           50 KAGVSK-AILECAGQNVERECSQQAQ-QRKND-YI--------ITGGGFLRCKNIIHVIGGND----------VKSSVSS  108 (183)
T ss_dssp             CSTHHH-HHHHHHCHHHHHHHHHHHH-HSCCS-EE--------EEECTTSBSSEEEEEETTSC----------HHHHHHH
T ss_pred             CccHHH-HHHHHhhHHHHHHHHHhcC-CCCCc-eE--------EecCCCCCCCEEEEeCcHHH----------HHHHHHH
Confidence            456666 8999999999988877642 34443 11        24556677777777654422          8889999


Q ss_pred             hhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcC
Q 006654          267 VNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG  312 (636)
Q Consensus       267 ~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~  312 (636)
                      ||.+|++++++|||||+||||+||||.++||+++++++++|+++++
T Consensus       109 ~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~fl~~~~  154 (183)
T 4abl_A          109 VLQECEKKNYSSICLPAIGTGNAKQHPDKVAEAIIDAIEDFVQKGS  154 (183)
T ss_dssp             HHHHHHHTTCCEEEECCTTSSTTCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCCeEeeccccCCCCCcCHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999874

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.29  E-value=6e-11  Score=115.55  Aligned_cols=126  Identities=22%  Similarity=0.201  Sum_probs=89.6

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC---------CCCCcH-------HHHHHHHHHHHhCCC
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------GKSGTK-------VQCLTSASSALKKGK   79 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~---------~~~~~~-------~~~~~~~~~~L~~G~   79 (636)
                      ...++.+|+|+|+|||||||+++.|+..+|  +.+++.|.+..         +.....       ..+...+...+..|.
T Consensus        25 ~~~~g~~i~l~G~~GsGKSTl~~~L~~~~g--~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~  102 (200)
T 4eun_A           25 TGEPTRHVVVMGVSGSGKTTIAHGVADETG--LEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMDARADAGV  102 (200)
T ss_dssp             ---CCCEEEEECCTTSCHHHHHHHHHHHHC--CEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cCCCCcEEEEECCCCCCHHHHHHHHHHhhC--CeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHHhcCC
Confidence            344567999999999999999999999887  77888887642         111111       112244555667888


Q ss_pred             eEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCC
Q 006654           80 SVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPK  152 (636)
Q Consensus        80 ~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~  152 (636)
                      .+|+|...+....|..+.++   ...+.+|+|++|.+++.+|+..|..+.      .+.+.++.+++.++++.
T Consensus       103 ~viid~~~~~~~~~~~l~~~---~~~~~vv~l~~~~e~l~~Rl~~R~~~~------~~~~~l~~~~~~~~~~~  166 (200)
T 4eun_A          103 STIITCSALKRTYRDVLREG---PPSVDFLHLDGPAEVIKGRMSKREGHF------MPASLLQSQLATLEALE  166 (200)
T ss_dssp             CEEEEECCCCHHHHHHHTTS---SSCCEEEEEECCHHHHHHHHTTCSCCS------SCGGGHHHHHHHCCCCC
T ss_pred             CEEEEchhhhHHHHHHHHHh---CCceEEEEEeCCHHHHHHHHHhcccCC------CCHHHHHHHHHHhCCCC
Confidence            99999988887777766433   224468899999999999999987642      23566777777776554

>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens}

Probab=99.28  E-value=4.8e-13  Score=134.96  Aligned_cols=115  Identities=12%  Similarity=0.117  Sum_probs=92.7

Q ss_pred             CccCCCCCchhhHHHHHHHHhhcCCCCCCCCCCcccCCCCCCcccccccccccCcceecccccc-cchhhcccCChhhhh
Q 006654          188 GSFGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDA-AGEEVKGTENPEVAS  266 (636)
Q Consensus       188 gc~~~~~~~~~v~~~i~k~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~s  266 (636)
                      |+.+. ++|.++|.+|.+-+++.|. -++|. ++        .|.+.++.|.++-|.+-+.+.. ......+.|..||.+
T Consensus        91 gGV~~-AI~~aaG~~l~~ec~~~g~-~~~G~-a~--------iT~~~~L~~k~VIH~vgP~~~~~~~~~~~~~L~~~y~~  159 (235)
T 2x47_A           91 GGVDG-CIHRAAGPLLTDECRTLQS-CKTGK-AK--------ITGGYRLPAKYVIHTVGPIAYGEPSASQAAELRSCYLS  159 (235)
T ss_dssp             SHHHH-HHHHHHCHHHHHHHHTSCC-CCBTC-EE--------EEECTTSSSSEEEEEBCCCCTTCCCHHHHHHHHHHHHH
T ss_pred             cHHHH-HHHHHhCHHHHHHHHHhCC-CCCCc-eE--------EecCCCCCCCEEEEecCccccCCCCcchHHHHHHHHHH
Confidence            56666 8999999999988877543 35554 11        2455667777888877777642 235567889999999


Q ss_pred             hhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCC
Q 006654          267 VNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGN  313 (636)
Q Consensus       267 ~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~~  313 (636)
                      ||.+|.+++++|||||+||||+||||.++||+|+++++++|+++++.
T Consensus       160 ~L~~A~e~~i~SIAfP~IstG~~g~p~~~aa~i~~~~v~~fl~~~~~  206 (235)
T 2x47_A          160 SLDLLLEHRLRSVAFPCISTGVFGYPCEAAAEIVLATLREWLEQHKD  206 (235)
T ss_dssp             HHHHHHHTTCCEEEECCTTCSTTSCCHHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHhCCceEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999987643

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=99.27  E-value=2.6e-11  Score=119.62  Aligned_cols=108  Identities=18%  Similarity=0.264  Sum_probs=77.9

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-cC------------------CCCCcHHHHHHHHHHHHh---
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALK---   76 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r~------------------~~~~~~~~~~~~~~~~L~---   76 (636)
                      ++.+|+|+|+|||||||+|+.|++.++  +.+++.|++ +.                  +...........+...+.   
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l~--~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~   80 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERFH--AAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNP   80 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcC--ceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhcc
Confidence            456899999999999999999999998  677887554 21                  111122233344445554   


Q ss_pred             -CCCeEEEeCCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhcccc
Q 006654           77 -KGKSVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEH  128 (636)
Q Consensus        77 -~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v-~vV~Ld~p~e~l~~R~~~R~~~  128 (636)
                       .|.+||+|+++.+..++..|..+ ...+..+ .+|+|++|.+++.+|+..|..+
T Consensus        81 ~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~  135 (220)
T 1aky_A           81 ACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIH  135 (220)
T ss_dssp             GGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEEC
T ss_pred             ccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCcc
Confidence             46789999988888777766554 4333333 5899999999999999998754

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=99.27  E-value=2e-11  Score=120.56  Aligned_cols=107  Identities=20%  Similarity=0.243  Sum_probs=76.6

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC-------------------CCCcHHHHHHHHHHHHhC---
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG-------------------KSGTKVQCLTSASSALKK---   77 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~-------------------~~~~~~~~~~~~~~~L~~---   77 (636)
                      +..|+|+|+|||||||+|+.|++.++  +.+++.|.+...                   ...........+..+|..   
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~~l~--~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~   82 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKKEYG--LAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGVC   82 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC--ceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcccc
Confidence            45789999999999999999999998  778888655211                   111122233444555544   


Q ss_pred             CCeEEEeCCCCCHHHHHHHHHh-CCCCC-eEEEEEEeCCHHHHHHHHHhcccc
Q 006654           78 GKSVFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRIEH  128 (636)
Q Consensus        78 G~~VIID~tn~~~~~R~~l~~l-~~~g~-~v~vV~Ld~p~e~l~~R~~~R~~~  128 (636)
                      |..||+|+++.+..+...+..+ ...+. .-.+|+|++|.+++.+|+..|..+
T Consensus        83 ~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~  135 (217)
T 3be4_A           83 VNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTH  135 (217)
T ss_dssp             TTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEEC
T ss_pred             CCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCC
Confidence            7889999988887777666543 33332 225899999999999999998754

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=99.26  E-value=5.1e-11  Score=114.43  Aligned_cols=105  Identities=23%  Similarity=0.378  Sum_probs=76.9

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC-------------------CCCCcHHH----HHHHHHHH
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------GKSGTKVQ----CLTSASSA   74 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~-------------------~~~~~~~~----~~~~~~~~   74 (636)
                      .++.+|+|+|+|||||||+|+.|++.++  +.+++.|.+..                   +.......    +...+...
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~--~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~   84 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQKYG--YTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAK   84 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHhC--CeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhc
Confidence            4567899999999999999999999998  66788766421                   11111211    12333444


Q ss_pred             HhCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           75 LKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        75 L~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      +..|..||+|+++....++..|... ...+   .+|+|++|.+++.+|+..|..
T Consensus        85 ~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~---~vi~l~~~~e~~~~R~~~R~~  135 (196)
T 2c95_A           85 VNTSKGFLIDGYPREVQQGEEFERRIGQPT---LLLYVDAGPETMTQRLLKRGE  135 (196)
T ss_dssp             TTTCSCEEEESCCCSHHHHHHHHHHTCCCS---EEEEEECCHHHHHHHHHHHHT
T ss_pred             cccCCcEEEeCCCCCHHHHHHHHHhcCCCC---EEEEEECCHHHHHHHHHccCC
Confidence            5678899999988888877776555 4333   488999999999999998864

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=99.26  E-value=2.1e-11  Score=113.91  Aligned_cols=116  Identities=19%  Similarity=0.331  Sum_probs=80.5

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCC-------CCc-------------HHHHHHHHHHHH--hCC
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK-------SGT-------------KVQCLTSASSAL--KKG   78 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~-------~~~-------------~~~~~~~~~~~L--~~G   78 (636)
                      .+|+|+|+|||||||+|+.| +.++  +.+++.|++....       ...             .......+...+  ..+
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   78 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERG--AKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELGTSNH   78 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTT--CEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHHHHHHCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCC--CcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCC
Confidence            47899999999999999999 8888  6677765442110       000             001224455666  567


Q ss_pred             CeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHh
Q 006654           79 KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ  146 (636)
Q Consensus        79 ~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~  146 (636)
                      ..||+|+. +...++..+... .   .+..+|+|++|.+++.+|+..|....   .....+++.+++..
T Consensus        79 ~~vi~dg~-~~~~~~~~l~~~~~---~~~~~i~l~~~~~~~~~R~~~R~~~~---~~~~~~~~~~r~~~  140 (179)
T 3lw7_A           79 DLVVFDGV-RSLAEVEEFKRLLG---DSVYIVAVHSPPKIRYKRMIERLRSD---DSKEISELIRRDRE  140 (179)
T ss_dssp             SCEEEECC-CCHHHHHHHHHHHC---SCEEEEEEECCHHHHHHHHHTCC-------CCCHHHHHHHHHH
T ss_pred             CeEEEeCC-CCHHHHHHHHHHhC---CCcEEEEEECCHHHHHHHHHhccCCC---CcchHHHHHHHHHh
Confidence            78999997 888888888776 4   34578999999999999999996531   12455666666644

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=99.25  E-value=1.8e-11  Score=120.23  Aligned_cols=106  Identities=15%  Similarity=0.216  Sum_probs=80.3

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-cC------------------CCCCcHHHHHHHHHHHHhC---CC
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALKK---GK   79 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r~------------------~~~~~~~~~~~~~~~~L~~---G~   79 (636)
                      .|+|+|+|||||||+|+.|++.++  +.+++.|.+ +.                  +...........+...+..   +.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~--~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~   79 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYG--IPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCER   79 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSS--CCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGGGTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC--CcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccccC
Confidence            478999999999999999999998  667887554 21                  1112333344555666654   78


Q ss_pred             eEEEeCCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhccccc
Q 006654           80 SVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEHE  129 (636)
Q Consensus        80 ~VIID~tn~~~~~R~~l~~l-~~~g~~v-~vV~Ld~p~e~l~~R~~~R~~~~  129 (636)
                      .+|+|+++.+..++..+... ...+..+ .+++|++|.+++.+|+..|..++
T Consensus        80 ~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~  131 (216)
T 3dl0_A           80 GFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICS  131 (216)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEET
T ss_pred             CEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCC
Confidence            89999999999888888776 5444444 68899999999999999996654

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=99.25  E-value=3.3e-11  Score=117.15  Aligned_cols=109  Identities=16%  Similarity=0.230  Sum_probs=77.5

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-cC------------------CCCCcHHHHHHHHHHHH-
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSAL-   75 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r~------------------~~~~~~~~~~~~~~~~L-   75 (636)
                      .+.+|.+|+|+|+|||||||+|+.|++.++  +.+++.|.+ +.                  +...........+.+.+ 
T Consensus        16 ~~~~~~~I~l~G~~GsGKST~a~~La~~l~--~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~   93 (201)
T 2cdn_A           16 PRGSHMRVLLLGPPGAGKGTQAVKLAEKLG--IPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLN   93 (201)
T ss_dssp             CCCSCCEEEEECCTTSSHHHHHHHHHHHHT--CCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHhC--CcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHh
Confidence            345678999999999999999999999998  556887554 21                  01111222223333333 


Q ss_pred             --hCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhcc
Q 006654           76 --KKGKSVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRI  126 (636)
Q Consensus        76 --~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v-~vV~Ld~p~e~l~~R~~~R~  126 (636)
                        ..+..||+|+++.+..++..|..+ ...+..+ .+|+|++|.+++.+|+..|.
T Consensus        94 ~~~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~  148 (201)
T 2cdn_A           94 NPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRG  148 (201)
T ss_dssp             SGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHC
T ss_pred             cccCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence              346789999999888888777665 4333323 68999999999999999985

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=99.24  E-value=3.6e-11  Score=114.39  Aligned_cols=126  Identities=10%  Similarity=0.104  Sum_probs=80.7

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh----hhhc----CCCC-----CcH-HHHHHHHHHHHhC-CCeEEE
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ----DTIN----KGKS-----GTK-VQCLTSASSALKK-GKSVFL   83 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~----D~ir----~~~~-----~~~-~~~~~~~~~~L~~-G~~VII   83 (636)
                      ++.+|+|+|+|||||||+|+.|++.++.++. ++.    +.++    .+..     ..+ ..+...+...+.. |..||+
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i-~d~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~l~~~g~~vi~   82 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFV-FEPEEMGQALRKLTPGFSGDPQEHPMWIPLMLDALQYASREAAGPLIV   82 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHSTTCEE-CCTHHHHHHHHHTSTTCCSCGGGSTTHHHHHHHHHHHHHHHCSSCEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCCEE-EchhhhHHHHHHhCccccchhhhhHHHHHHHHHHHHHHHHhCCCcEEE
Confidence            5678999999999999999999999885432 242    1222    1110     111 1233455556665 778999


Q ss_pred             eCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCC
Q 006654           84 DRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELP  151 (636)
Q Consensus        84 D~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P  151 (636)
                      |++......+..+... ...+..+..|+|++|.+++.+|+..|..++      ...+.+++++..++++
T Consensus        83 d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~~r~------~~~~~~~~~~~~~~~~  145 (183)
T 2vli_A           83 PVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQPQ------VNVGTVEDRLNELRGE  145 (183)
T ss_dssp             EECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC----------CCHHHHHHHHHHHTSG
T ss_pred             eeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhccccc------hhHHHHHHHHHhhccc
Confidence            9988887777777666 555655566999999999999999986532      2356677777777665

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=99.24  E-value=3.3e-11  Score=116.03  Aligned_cols=105  Identities=21%  Similarity=0.392  Sum_probs=76.9

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC-------------------CCCCcHHHHH----HHHHHH
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------GKSGTKVQCL----TSASSA   74 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~-------------------~~~~~~~~~~----~~~~~~   74 (636)
                      .++.+|+|+|+|||||||+|+.|++.++  +.+++.|.+..                   +.........    ..+...
T Consensus        10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~--~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~   87 (199)
T 2bwj_A           10 RKCKIIFIIGGPGSGKGTQCEKLVEKYG--FTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVAS   87 (199)
T ss_dssp             HHSCEEEEEECTTSSHHHHHHHHHHHHT--CEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHhC--CeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc
Confidence            3567999999999999999999999998  77788766521                   1111222222    233344


Q ss_pred             HhCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           75 LKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        75 L~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      +..|..||+|+++....++..|... ...+   .+|+|++|.+++.+|+..|..
T Consensus        88 ~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~---~~i~l~~~~~~~~~R~~~R~~  138 (199)
T 2bwj_A           88 LGDTRGFLIDGYPREVKQGEEFGRRIGDPQ---LVICMDCSADTMTNRLLQMSR  138 (199)
T ss_dssp             TTSCSCEEEETCCSSHHHHHHHHHHTCCCS---EEEEEECCHHHHHHHHHHTCC
T ss_pred             cccCccEEEeCCCCCHHHHHHHHHhcCCCC---EEEEEECCHHHHHHHHHcCCC
Confidence            4568899999999998888777554 3333   488999999999999999865

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=99.24  E-value=2.6e-11  Score=118.95  Aligned_cols=106  Identities=17%  Similarity=0.211  Sum_probs=79.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc-C------------------CCCCcHHHHHHHHHHHHhC---CC
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-K------------------GKSGTKVQCLTSASSALKK---GK   79 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir-~------------------~~~~~~~~~~~~~~~~L~~---G~   79 (636)
                      .|+|+|+|||||||+|+.|++.++  +.+++.|.+. .                  +...........+.+.+..   +.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~--~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~   79 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYE--IPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDCQK   79 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC--CCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC--CcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccCCC
Confidence            478999999999999999999998  6678875542 1                  1111233334555566644   77


Q ss_pred             eEEEeCCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhccccc
Q 006654           80 SVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEHE  129 (636)
Q Consensus        80 ~VIID~tn~~~~~R~~l~~l-~~~g~~v-~vV~Ld~p~e~l~~R~~~R~~~~  129 (636)
                      .+|+|+++....++..|..+ ...+..+ .+++|++|.+++.+|+..|..++
T Consensus        80 ~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~  131 (216)
T 3fb4_A           80 GFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICK  131 (216)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEET
T ss_pred             cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCC
Confidence            89999999999888888776 5444444 68899999999999999996554

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=99.23  E-value=9e-11  Score=117.95  Aligned_cols=140  Identities=19%  Similarity=0.249  Sum_probs=96.2

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhh-hcC------------------CCCCcHHHHHHHHHHHHhC---C
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT-INK------------------GKSGTKVQCLTSASSALKK---G   78 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~-ir~------------------~~~~~~~~~~~~~~~~L~~---G   78 (636)
                      ..+.+.|+|||||||+|+.|++.++  +.+|+.++ ++.                  +...+.+.+...+.++|..   .
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~~~g--~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~~   86 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKEKFG--IPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCA   86 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHT--CCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGGT
T ss_pred             cceeeECCCCCCHHHHHHHHHHHhC--CCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcccC
Confidence            3568999999999999999999998  77898744 432                  1222344555677777764   4


Q ss_pred             CeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCc
Q 006654           79 KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGF  157 (636)
Q Consensus        79 ~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egf  157 (636)
                      .+||+|+++++..|...|... ....   .+|+|++|.+++.+|+..|..++..         .+.++..|.+|. .++.
T Consensus        87 ~g~ILDGfPRt~~Qa~~L~~~~~~~d---~VI~Ldvp~e~l~~Rl~~R~~~~~~---------G~~Yh~~~~pp~-~~~~  153 (230)
T 3gmt_A           87 NGYLFDGFPRTIAQADAMKEAGVAID---YVLEIDVPFSEIIERMSGRRTHPAS---------GRTYHVKFNPPK-VEGK  153 (230)
T ss_dssp             TCEEEESCCCSHHHHHHHHHTTCCCS---EEEEECCCHHHHHHHHHTEEEETTT---------TEEEETTTBCCS-STTB
T ss_pred             CCeEecCCCCcHHHHHHHHHhCCCcc---EEEEEeCCHHHHHHHHHcCCccccc---------CCcccccCCCCC-ccCc
Confidence            679999999999888877554 3333   4899999999999999999876432         122334466666 3443


Q ss_pred             cEE----EEeCChhHHHHHHHH
Q 006654          158 SRI----TLCQNENDVQAALDT  175 (636)
Q Consensus       158 d~V----iii~~~~~vdaiv~~  175 (636)
                      +++    .+.+.++..+.+.++
T Consensus       154 ~d~~g~~L~~R~DD~~e~i~~R  175 (230)
T 3gmt_A          154 DDVTGEPLVQRDDDKEETVKKR  175 (230)
T ss_dssp             CTTTCCBCBCCGGGSHHHHHHH
T ss_pred             CCCccCccccCCCCCHHHHHHH
Confidence            321    133555556655554

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=99.22  E-value=5.5e-11  Score=113.54  Aligned_cols=104  Identities=19%  Similarity=0.305  Sum_probs=75.9

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC-------------------CCCCcHHHHHHHHHHHHhCCC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------GKSGTKVQCLTSASSALKKGK   79 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~-------------------~~~~~~~~~~~~~~~~L~~G~   79 (636)
                      ++.+|+|+|+|||||||+|+.|++.++  +.+++.|.+..                   +...........+...+..+ 
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~~l~--~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~~~-   79 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQELG--FKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELAER-   79 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHHHT--CEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCCSE-
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC--CeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhcCC-
Confidence            457899999999999999999999988  67788764421                   11112222334445555544 


Q ss_pred             eEEEeCCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhcc
Q 006654           80 SVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRI  126 (636)
Q Consensus        80 ~VIID~tn~~~~~R~~l~~l-~~~g~~v-~vV~Ld~p~e~l~~R~~~R~  126 (636)
                       +|+|+++....++..+..+ ...+... .+|+|++|.+++.+|+..|.
T Consensus        80 -~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~  127 (186)
T 3cm0_A           80 -VIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRA  127 (186)
T ss_dssp             -EEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHH
T ss_pred             -EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence             9999998888777766655 4444433 68999999999999999986

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=99.22  E-value=7.9e-11  Score=110.47  Aligned_cols=128  Identities=17%  Similarity=0.159  Sum_probs=81.6

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCC-------------
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN-------------   87 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn-------------   87 (636)
                      .+|+|+|+|||||||+|+.|++.++  +.+++.|.+...... ....+ .....+..|..+|.|...             
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~--~~~i~~d~~~~~~~~-~~~~~-~~~~~l~~~~~vi~dr~~~~~~v~~~~~~~~   77 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELK--YPIIKGSSFELAKSG-NEKLF-EHFNKLADEDNVIIDRFVYSNLVYAKKFKDY   77 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHC--CCEEECCCHHHHTTC-HHHHH-HHHHHHTTCCSEEEESCHHHHHHHTTTBTTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC--CeeecCcccccchhH-HHHHH-HHHHHHHhCCCeEEeeeecchHHHHHHHHHh
Confidence            4789999999999999999999998  666888876543321 12222 234567888889999521             


Q ss_pred             --CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCccEEE
Q 006654           88 --LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRIT  161 (636)
Q Consensus        88 --~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd~Vi  161 (636)
                        .....+..+... ..   +..+|+|++|.+++.+|+..|.+.      ....+...++.+.|+.+........+.
T Consensus        78 ~~~~~~~~~~l~~~~~~---~~~~i~l~~~~e~~~~R~~~r~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (173)
T 3kb2_A           78 SILTERQLRFIEDKIKA---KAKVVYLHADPSVIKKRLRVRGDE------YIEGKDIDSILELYREVMSNAGLHTYS  145 (173)
T ss_dssp             CCCCHHHHHHHHHHHTT---TEEEEEEECCHHHHHHHHHHHSCS------CCCHHHHHHHHHHHHHHHHTCSSCEEE
T ss_pred             hHhhHHHHHHHhccCCC---CCEEEEEeCCHHHHHHHHHhcCCc------chhhhHHHHHHHHHHHHHhhcCCCEEE
Confidence              223333333322 22   234889999999999999998432      223455666666555543323334443

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=99.20  E-value=1e-10  Score=113.47  Aligned_cols=106  Identities=17%  Similarity=0.341  Sum_probs=76.5

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC------C--------------CCCcHH----HHHHHHH
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK------G--------------KSGTKV----QCLTSAS   72 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~------~--------------~~~~~~----~~~~~~~   72 (636)
                      +.++.+|+|+|+|||||||+|+.|++.++  +.+++.|.+..      +              ......    .+...+.
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g--~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~   89 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYS--FVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAIS   89 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHSS--CEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHcC--ceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHH
Confidence            34577999999999999999999999998  67888775521      1              111111    1223444


Q ss_pred             HHHhCC-CeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           73 SALKKG-KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        73 ~~L~~G-~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      ..+..| ..+|+|+++.+..++..+... ...+   .+|+|++|.+++.+|+..|..
T Consensus        90 ~~l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~---~~i~l~~~~e~~~~Rl~~R~~  143 (203)
T 1ukz_A           90 DNVKANKHKFLIDGFPRKMDQAISFERDIVESK---FILFFDCPEDIMLERLLERGK  143 (203)
T ss_dssp             HHHHTTCCEEEEETCCCSHHHHHHHHHHTCCCS---EEEEEECCHHHHHHHHHHHHH
T ss_pred             hhhccCCCeEEEeCCCCCHHHHHHHHHhcCCCC---EEEEEECCHHHHHHHHHhccc
Confidence            566677 589999988888777665544 3333   478999999999999999864

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=99.20  E-value=1.1e-10  Score=115.86  Aligned_cols=105  Identities=17%  Similarity=0.158  Sum_probs=77.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-cCC------------------CCCcHHHHHHHHHHHHhC--CCe
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NKG------------------KSGTKVQCLTSASSALKK--GKS   80 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r~~------------------~~~~~~~~~~~~~~~L~~--G~~   80 (636)
                      +|+|.|+|||||||+|+.|++.++  +.+++.|++ +..                  .......+...+..+|..  |..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg--~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~g~~   79 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYS--LAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKGKDG   79 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT--CEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHCTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC--CeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhcccCCe
Confidence            689999999999999999999998  677888655 321                  111223344566677777  899


Q ss_pred             EEEeCCCCCHHHHHHHHHh-CCCCCe-EEEEEEeCCHHHHHHHHHhcccc
Q 006654           81 VFLDRCNLEREQRTDFVKL-GGPEVD-VHAVVLDLPAKLCISRSVKRIEH  128 (636)
Q Consensus        81 VIID~tn~~~~~R~~l~~l-~~~g~~-v~vV~Ld~p~e~l~~R~~~R~~~  128 (636)
                      ||+|+++.+..++..+..+ ...+.. -.+|+|++|.+++.+|+..|..+
T Consensus        80 vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~  129 (223)
T 2xb4_A           80 WLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRIC  129 (223)
T ss_dssp             EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCEE
T ss_pred             EEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccCC
Confidence            9999988887777666544 333322 25889999999999999999753

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=99.19  E-value=8.1e-11  Score=131.74  Aligned_cols=129  Identities=16%  Similarity=0.241  Sum_probs=86.8

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhcCCCC------------CcH-----HHH----HHHHH
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKS------------GTK-----VQC----LTSAS   72 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir~~~~------------~~~-----~~~----~~~~~   72 (636)
                      ..+|.+|+|+|+|||||||+|++|++.++   ....+++.|.++....            +..     ..+    +..+.
T Consensus        32 ~~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~~  111 (520)
T 2axn_A           32 TNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDVK  111 (520)
T ss_dssp             -CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccccccCcccHHHHHHHHHHHHHHHHHHH
Confidence            35678999999999999999999998874   3456688888753210            111     111    12233


Q ss_pred             HHH--hCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCC-HHHHHHHHHhcccccCCCCCCChHHHHHHHH
Q 006654           73 SAL--KKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLP-AKLCISRSVKRIEHEGNLQGGKAAAVVNRML  145 (636)
Q Consensus        73 ~~L--~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p-~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~  145 (636)
                      ..|  ..|..||+|+||.....|..+.++ ++.++.+.++++.++ .+++.+|+..|........+..++++++.+.
T Consensus       112 ~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~~~rPdl~~~d~e~~~~~~~  188 (520)
T 2axn_A          112 SYLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVKISSPDYKDCNSAEAMDDFM  188 (520)
T ss_dssp             HHHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHTTTSGGGTTSCHHHHHHHHH
T ss_pred             HHHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhhhcCCccccCCHHHHHHHHH
Confidence            344  568899999999999999999888 777877777888887 5556666656653211111224666665553

>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A

Probab=99.18  E-value=6.5e-13  Score=127.24  Aligned_cols=83  Identities=11%  Similarity=0.050  Sum_probs=62.7

Q ss_pred             cccCcceecccccccc-hhhcccCChhhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcC-CeE
Q 006654          238 CLEGQEITSLLSDAAG-EEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG-NAR  315 (636)
Q Consensus       238 ~~~~~~~~~~~~~~~~-~~~~~~l~~~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~-~~~  315 (636)
                      |.++-|.+-|.|.... .+.+++|..||.+||.+|++++++|||||+||||+||||.++||+ +++++.+|++... .+.
T Consensus        70 ~k~VIHtVGP~~~~~~~~~~~~~L~~~y~~~L~~A~~~~~~SIAfP~IstGi~g~P~~~aa~-ai~~v~~~~~~~~~~V~  148 (168)
T 3gpg_A           70 TYPVIHAVGPNFSNYSESEGDRELAAAYREVAKEVTRLGVNSVAIPLLSTGVYSGGKDRLTQ-SLNHLFTAMDSTDADVV  148 (168)
T ss_dssp             TEEEEEECCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEECTTSSTTSTTSCCHHH-HC-CHHHHHTTCCSEEE
T ss_pred             CCEEEEeCCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCcEEEECccccCCCCCCHHHHHH-HHHHHHHhccCCCCEEE
Confidence            3444444445555322 334578999999999999999999999999999999999999999 8899999987653 245


Q ss_pred             EEEecc
Q 006654          316 LVLVDL  321 (636)
Q Consensus       316 ~v~~~~  321 (636)
                      |+.++.
T Consensus       149 fv~f~~  154 (168)
T 3gpg_A          149 IYCRDK  154 (168)
T ss_dssp             EEESCH
T ss_pred             EEECCH
Confidence            555433

>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A

Probab=99.11  E-value=6.6e-12  Score=119.32  Aligned_cols=118  Identities=14%  Similarity=0.043  Sum_probs=90.8

Q ss_pred             CccCCCCCchhhHHHHHHHHhhcCCCCCCCCCCcccCCCCCCcccccccccccCcceecccccccchhhcccCChhhhhh
Q 006654          188 GSFGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASV  267 (636)
Q Consensus       188 gc~~~~~~~~~v~~~i~k~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~  267 (636)
                      |..+. +++..++.++.+..++.| ..++|. ++        .|.+.++.+.++-|.+.+.|..   ...+.+..||.+|
T Consensus        31 gGv~~-aI~~~~G~~l~~~c~~~g-~~~~G~-a~--------it~~~~L~~~~Vih~vgp~~~~---~~~~~L~~~~~~~   96 (159)
T 2dx6_A           31 AGVAG-AILRKGGPSIQEECDRIG-KIRVGE-AA--------VTGAGNLPVRYVIHAAVLGDEP---ASLETVRKATKSA   96 (159)
T ss_dssp             STTHH-HHHHHHCTHHHHHHHHHC-CCCTTC-EE--------EEECTTSSSSEEEEEEEESSSC---CCHHHHHHHHHHH
T ss_pred             chHHH-HHHHHhCHHHHHHHHhcC-CCCCCc-EE--------EecCCCCCCCEEEEEeCCCCCC---chHHHHHHHHHHH
Confidence            45556 789999999998888765 345554 11        2445567778888888777752   2367888999999


Q ss_pred             hcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 006654          268 NQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVD  320 (636)
Q Consensus       268 l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~~~~~v~~~  320 (636)
                      |.++.+++++|||||+||||+||||.++|++++++++.+| .....+.++..+
T Consensus        97 L~~a~~~~~~sIa~P~igtG~~g~p~~~~a~i~~~~~~~~-~~~~~V~~v~~~  148 (159)
T 2dx6_A           97 LEKAVELGLKTVAFPLLGTGVGGLPVEAVARVMLEEIKKA-PDTLEVTLYGYR  148 (159)
T ss_dssp             HHHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHTTS-CTTCEEEEEESS
T ss_pred             HHHHHHcCCcEEEECCccCCCCCCCHHHHHHHHHHHHHhc-CCCCEEEEEECC
Confidence            9999999999999999999999999999999999999999 211234555543

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=99.10  E-value=7e-10  Score=109.02  Aligned_cols=102  Identities=22%  Similarity=0.305  Sum_probs=72.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-cC------------------CCCCcHHHHHHHHHHHHhCC---C
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALKKG---K   79 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r~------------------~~~~~~~~~~~~~~~~L~~G---~   79 (636)
                      .|+|.|+|||||||+|+.|++.++  +.+++.|++ ++                  +.......+...+...+..+   .
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g--~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~   79 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYG--IPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRN   79 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHC--CCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC--CeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCC
Confidence            479999999999999999999998  667887554 32                  01112233445556666553   5


Q ss_pred             eEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654           80 SVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (636)
Q Consensus        80 ~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~  128 (636)
                      .||+|+++.+..+...|... ...+   .+++|++|.+++.+|+..|..+
T Consensus        80 ~~i~dg~~~~~~~~~~l~~~~~~~d---~vi~l~~~~e~~~~R~~~R~~~  126 (214)
T 1e4v_A           80 GFLLDGFPRTIPQADAMKEAGINVD---YVLEFDVPDELIVDRIVGRRVH  126 (214)
T ss_dssp             CEEEESCCCSHHHHHHHHHTTCCCS---EEEEEECCHHHHHHHHHTEEEE
T ss_pred             CEEEeCCCCCHHHHHHHHhcCCCCC---EEEEEECCHHHHHHHHHCCccc
Confidence            79999988777666555333 2222   4889999999999999988754

>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A*

Probab=99.10  E-value=1.2e-11  Score=122.83  Aligned_cols=110  Identities=15%  Similarity=0.096  Sum_probs=89.1

Q ss_pred             CCccCCCCCchhhH----HHHHHHHhh----cCCC-CCCCCCCcccCCCCCCccccccccc---ccCcceecc----ccc
Q 006654          187 HGSFGQKNPDAKIQ----LGIMKFLKK----VDAP-SNTGSTASSTQDPVPPQITEEKNSC---LEGQEITSL----LSD  250 (636)
Q Consensus       187 hgc~~~~~~~~~v~----~~i~k~l~~----~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~  250 (636)
                      .|+.+. +++..+|    .+|.+-+++    .|.. .++|. ++        .|.+.++.+   .++-|.+-+    .|+
T Consensus        49 ggGV~~-aI~~aaG~~~~~~l~~ec~~~~~~~g~~~~~~G~-a~--------iT~~~~L~~~g~k~VIH~vgP~~~~~~~  118 (211)
T 1vhu_A           49 GGGVAY-AIAKACAGDAGLYTEISKKAMREQFGRDYIDHGE-VV--------VTPAMNLEERGIKYVFHTVGPICSGMWS  118 (211)
T ss_dssp             CSHHHH-HHHHHHHSSHHHHHHHHHHHHHHHHSSSCCCTTC-CE--------EEECGGGGGGTCCEEEEEECCCCTTCCC
T ss_pred             ccHHHH-HHHHHhCCCchHHHHHHHHHHHHHcCCCcccCCc-EE--------EEECCCCCccCcCEEEEecCCccccccC
Confidence            466766 8999999    888876665    4543 46664 22        255667777   788888878    664


Q ss_pred             ccchhhcccCChhhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHH
Q 006654          251 AAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVN  309 (636)
Q Consensus       251 ~~~~~~~~~l~~~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~  309 (636)
                      .   ...+.|..||.+||.+|.+++++|||||+||||+||||.++||+++++++++|++
T Consensus       119 ~---~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IstG~~G~p~~~aa~i~~~~v~~~l~  174 (211)
T 1vhu_A          119 E---ELKEKLYKAFLGPLEKAEEMGVESIAFPAVSAGIYGCDLEKVVETFLEAVKNFKG  174 (211)
T ss_dssp             H---HHHHHHHHHHHHHHHHHHHHTCCEEEECCTTSSTTCCCHHHHHHHHHHHHHHCCC
T ss_pred             c---chHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHh
Confidence            2   4567888999999999999999999999999999999999999999999999993

>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A*

Probab=99.10  E-value=2.3e-11  Score=117.19  Aligned_cols=105  Identities=13%  Similarity=0.137  Sum_probs=78.4

Q ss_pred             CccCCCCCchhhHHHHHHHHhhc----CCCC---CCCC--CCcccCCCCCCcccccccccccCcceecccccccchhhcc
Q 006654          188 GSFGQKNPDAKIQLGIMKFLKKV----DAPS---NTGS--TASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKG  258 (636)
Q Consensus       188 gc~~~~~~~~~v~~~i~k~l~~~----g~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (636)
                      |+.+. ++|.++|.+|++..++.    |.-.   ++|.  ++.++.|++                  -|.|+.  ...++
T Consensus        51 gGV~~-AI~~aaG~~l~~ec~~~~~~~g~~~a~iT~G~~l~t~~VIHtV------------------GP~~~~--~~~~~  109 (176)
T 3ejf_A           51 SGVAK-AIADFCGLDFVEYCEDYVKKHGPQQRLVTPSFVKGIQCVNNVV------------------GPRHGD--NNLHE  109 (176)
T ss_dssp             SHHHH-HHHHHHCHHHHHHHHHHHHHHCCCSEEEECCCSTTEEEEEEEC------------------CCCTTC--SCHHH
T ss_pred             chHHH-HHHHHhhHHHHHHHHHHHHhcCCCCeeecccccccCCEEEEeC------------------CCCCCC--ccHHH
Confidence            56667 89999999999877653    4322   1333  344455544                  455543  34567


Q ss_pred             cCChhhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCCeEEEEeccC
Q 006654          259 TENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLT  322 (636)
Q Consensus       259 ~l~~~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~~~~~v~~~~~  322 (636)
                      +|..||.+||.    ++++|||||+||||+||||.++||+++++++++     ..+++++++.+
T Consensus       110 ~L~~~y~~~L~----~~~~SIAfPaIstGi~g~P~~~aA~ia~~~v~~-----~~v~v~~~~~D  164 (176)
T 3ejf_A          110 KLVAAYKNVLV----DGVVNYVVPVLSLGIFGVDFKMSIDAMREAFEG-----CTIRVLLFSLS  164 (176)
T ss_dssp             HHHHHHHTTCC----TTCCEEEEECCCTTSTTCCHHHHHHHHHHHHTT-----CCCEEEEEESC
T ss_pred             HHHHHHHHHHH----cCCcEEEECccccCCCCCCHHHHHHHHHHHhhh-----cceEEEEEcCC
Confidence            89999999998    899999999999999999999999999999983     34677775433

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=99.09  E-value=4.9e-10  Score=110.61  Aligned_cols=106  Identities=25%  Similarity=0.337  Sum_probs=71.8

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc-C------------------CCCCcHHHHHHHHHHHHh--
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-K------------------GKSGTKVQCLTSASSALK--   76 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir-~------------------~~~~~~~~~~~~~~~~L~--   76 (636)
                      +++.+|+|+|+|||||||+|+.|++.++  +.+++.|.+. .                  +...+.......+.+.+.  
T Consensus         3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~--~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~   80 (222)
T 1zak_A            3 ADPLKVMISGAPASGKGTQCELIKTKYQ--LAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQP   80 (222)
T ss_dssp             CCSCCEEEEESTTSSHHHHHHHHHHHHC--CEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC--CceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhc
Confidence            3567899999999999999999999998  6778876542 1                  112222223332333332  


Q ss_pred             --CCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654           77 --KGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (636)
Q Consensus        77 --~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~  128 (636)
                        .+.++|+|+++.+..++..+... ...+   .+|+|++|.+++.+|+..|..+
T Consensus        81 ~~~~~~~vidg~~~~~~~~~~l~~~~~~~~---~vi~L~~~~~~~~~R~~~r~~~  132 (222)
T 1zak_A           81 DAQENGWLLDGYPRSYSQAMALETLEIRPD---TFILLDVPDELLVERVVGRRLD  132 (222)
T ss_dssp             HHHHTCEEEESCCCSHHHHHHHHTTTCCCS---EEEEEECCHHHHHHHHTTEEEC
T ss_pred             cccCCcEEEECCCCCHHHHHHHHHcCCCCC---EEEEEECCHHHHHHHHHcCCcc
Confidence              24568889988777665554322 1122   4899999999999999988653

>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A*

Probab=99.08  E-value=1.7e-11  Score=117.45  Aligned_cols=112  Identities=13%  Similarity=0.098  Sum_probs=86.1

Q ss_pred             CCccCCCCCchhhHHHHHHHHhhc----CCCCCCCCCCcccCCCCCCcccccccccccCcceecccccccchhhcccCCh
Q 006654          187 HGSFGQKNPDAKIQLGIMKFLKKV----DAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENP  262 (636)
Q Consensus       187 hgc~~~~~~~~~v~~~i~k~l~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  262 (636)
                      .|+.+. ++|.++|.+|++..++.    | ..++|. ++        .|.++ +.+.++-|.+-|.|..  ++.+++|..
T Consensus        42 ggGV~~-AI~~aaG~~l~~ec~~~~~~~g-~~~~G~-a~--------iT~g~-l~~~~VIHtVgP~~~~--~~~~~~L~~  107 (168)
T 3eti_A           42 VGGVAR-AIDVFTGGKLTKRSKEYLKSSK-AIAPGN-AV--------LFENV-LEHLSVMNAVGPRNGD--SRVEGKLCN  107 (168)
T ss_dssp             CSTTHH-HHHHHTTTHHHHHHHHHHTTSC-CCCTTE-EE--------EEEEE-ETTEEEEEEECCCTTS--TTHHHHHHH
T ss_pred             CchHHH-HHHHHHHHHHHHHHHHHHHHcC-CCCCCC-EE--------EecCC-CCccEEEEecCCCCCc--chHHHHHHH
Confidence            467767 89999999999877663    3 345553 12        24455 6777788887788765  555788999


Q ss_pred             hhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCCeEEEEeccC
Q 006654          263 EVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLT  322 (636)
Q Consensus       263 ~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~~~~~v~~~~~  322 (636)
                      ||.+||.+.     +|||||+||||+||||.++||+++++++++     ..++++.++..
T Consensus       108 ~y~~~L~~~-----~SIAfP~IstG~~g~P~~~aa~i~~~~v~~-----~~V~~v~f~~~  157 (168)
T 3eti_A          108 VYKAIAKCD-----GKILTPLISVGIFKVKLEVSLQCLLKTVTD-----RDLNVFVYTDQ  157 (168)
T ss_dssp             HHHHHHTSC-----SCEEECCTTBSTTCBCHHHHHHHHHHHCCS-----SCEEEEECCHH
T ss_pred             HHHHHHHhc-----CceeecccccCCCCCCHHHHHHHHHHHHhc-----CeEEEEEcCHH
Confidence            999999862     799999999999999999999999999997     45667665333

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=99.07  E-value=9.5e-10  Score=109.70  Aligned_cols=109  Identities=19%  Similarity=0.250  Sum_probs=77.0

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc-C------------------CCCCcHHHHHHHHHHHHhC-
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-K------------------GKSGTKVQCLTSASSALKK-   77 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir-~------------------~~~~~~~~~~~~~~~~L~~-   77 (636)
                      ..+..|+|.|+|||||||+|+.|++.++  +.+++.|++. +                  +...........+...+.. 
T Consensus        14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~--~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~   91 (233)
T 1ak2_A           14 PKGVRAVLLGPPGAGKGTQAPKLAKNFC--VCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETP   91 (233)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHHT--CEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC--CceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhcc
Confidence            3457899999999999999999999998  6778876542 1                  1111223333445555543 


Q ss_pred             --CCeEEEeCCCCCHHHHHHHHHh-CCCCC-eEEEEEEeCCHHHHHHHHHhcccc
Q 006654           78 --GKSVFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRIEH  128 (636)
Q Consensus        78 --G~~VIID~tn~~~~~R~~l~~l-~~~g~-~v~vV~Ld~p~e~l~~R~~~R~~~  128 (636)
                        +.+||+|+++.+..++..+..+ ...+. .-.+|+|++|.+++.+|+..|..+
T Consensus        92 ~~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~  146 (233)
T 1ak2_A           92 PCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIH  146 (233)
T ss_dssp             GGTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEEC
T ss_pred             cccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcC
Confidence              4679999988888777665544 32211 225889999999999999999765

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=99.06  E-value=2.2e-10  Score=111.45  Aligned_cols=103  Identities=13%  Similarity=0.093  Sum_probs=68.1

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC-c------------HHHHHHHHHHHHhCCCeEEEeC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-T------------KVQCLTSASSALKKGKSVFLDR   85 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~-~------------~~~~~~~~~~~L~~G~~VIID~   85 (636)
                      +..+|+|+|+|||||||+++.|++.++  +.+++.|.+.....+ .            +......+...+..+..+||+.
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~~l~--~~~i~~d~~~~~~~g~~i~~~~~~~~~~~~~~~e~~~l~~l~~~~~~vi~~  101 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFARKLN--VPFIDLDWYIEERFHKTVGELFTERGEAGFRELERNMLHEVAEFENVVIST  101 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHT--CCEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEEEEC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcC--CCEEcchHHHHHHhCCcHHHHHHhcChHHHHHHHHHHHHHHhhcCCcEEEC
Confidence            446899999999999999999999998  556888776422111 0            1112233444555667788884


Q ss_pred             ---CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHH-hccccc
Q 006654           86 ---CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSV-KRIEHE  129 (636)
Q Consensus        86 ---tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~-~R~~~~  129 (636)
                         .......+..+..   .+   .+|||++|.+++.+|+. .|..++
T Consensus       102 ggg~~~~~~~~~~l~~---~~---~vi~L~~~~e~l~~Rl~~~~~~Rp  143 (199)
T 3vaa_A          102 GGGAPCFYDNMEFMNR---TG---KTVFLNVHPDVLFRRLRIAKQQRP  143 (199)
T ss_dssp             CTTGGGSTTHHHHHHH---HS---EEEEEECCHHHHHHHHHHTGGGCG
T ss_pred             CCcEEccHHHHHHHHc---CC---EEEEEECCHHHHHHHHhcCCCCCC
Confidence               3334444433322   12   48899999999999998 565543

>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A*

Probab=99.04  E-value=2e-11  Score=116.94  Aligned_cols=85  Identities=13%  Similarity=0.076  Sum_probs=61.9

Q ss_pred             cccCcceecccccccc-hhhcccCChhhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcC----
Q 006654          238 CLEGQEITSLLSDAAG-EEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG----  312 (636)
Q Consensus       238 ~~~~~~~~~~~~~~~~-~~~~~~l~~~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~----  312 (636)
                      +.++-|.+-|.|.... .+..++|..||.+||.++++++++|||||+||||+||||.++|++++.    +|++..+    
T Consensus        64 ~k~VIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~~i~----~~l~~~~~~~~  139 (168)
T 3gqe_A           64 AKHIIHAVGPNFNKVSEVEGDKQLAEAYESIAKIVNDNNYKSVAIPLLSTGIFSGNKDRLTQSLN----HLLTALDTTDA  139 (168)
T ss_dssp             TCCEEEEECCCTTTSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECTTSSTTSCSSCCHHHHHH----HHHHHHTTSCC
T ss_pred             CCEEEEcCCCccCCCCchhHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHH----HHHHHCCCCCC
Confidence            4555555566665432 334578999999999999999999999999999999999999999554    4444432    


Q ss_pred             CeEEEEeccCcchh
Q 006654          313 NARLVLVDLTQGSK  326 (636)
Q Consensus       313 ~~~~v~~~~~~~s~  326 (636)
                      .+.+|++|.+.+..
T Consensus       140 ~V~iv~fd~~~~~~  153 (168)
T 3gqe_A          140 DVAIYCRDKKWEMT  153 (168)
T ss_dssp             EEEEEESCHHHHHH
T ss_pred             eEEEEEcCHHHHHH
Confidence            25566655544433

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=99.04  E-value=1.4e-09  Score=107.75  Aligned_cols=106  Identities=21%  Similarity=0.219  Sum_probs=73.8

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc-C------------------CCCCcHHHHHHHHHHHHhC-
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-K------------------GKSGTKVQCLTSASSALKK-   77 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir-~------------------~~~~~~~~~~~~~~~~L~~-   77 (636)
                      .++.+|+|+|+|||||||+|+.|++.++  +.+++.|.+. .                  +...........+.+.+.. 
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~--~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~   82 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHFE--LKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNL   82 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHSS--SEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTC
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHcC--CeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc
Confidence            3567899999999999999999999998  6778875542 1                  1112222333444455553 


Q ss_pred             -CCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654           78 -GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (636)
Q Consensus        78 -G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~  128 (636)
                       +..+|+|+++.+..+...+..+...+   .+|+|++|.+++.+|+..|..+
T Consensus        83 ~~~~~vid~~~~~~~~~~~l~~~~~~~---~vi~L~~~~~~~~~R~~~R~~~  131 (227)
T 1zd8_A           83 TQYSWLLDGFPRTLPQAEALDRAYQID---TVINLNVPFEVIKQRLTARWIH  131 (227)
T ss_dssp             TTSCEEEESCCCSHHHHHHHHTTSCCC---EEEEEECCHHHHHHHHTCEEEE
T ss_pred             cCCCEEEeCCCCCHHHHHHHHHhcCCC---EEEEEECCHHHHHHHHHcCcCC
Confidence             67899999887766655443332222   4889999999999999988643

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=99.02  E-value=2.2e-09  Score=102.93  Aligned_cols=107  Identities=20%  Similarity=0.171  Sum_probs=77.7

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhcCCCCC----cH-H--HHH----HHHHHHHhCCCeEEE
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKSG----TK-V--QCL----TSASSALKKGKSVFL   83 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir~~~~~----~~-~--~~~----~~~~~~L~~G~~VII   83 (636)
                      .++.+|+|+|+|||||||+++.|++.++   ..+.+++.|.++....+    .. .  ...    ..+...+..|..||+
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~g~~vi~   90 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAGFTREERLRHLKRIAWIARLLARNGVIVIC   90 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHhCCCEEEE
Confidence            3568999999999999999999998764   23567888888654221    11 1  111    122333567878899


Q ss_pred             eCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHh
Q 006654           84 DRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVK  124 (636)
Q Consensus        84 D~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~  124 (636)
                      |+++.....|..+..+ ...+.+..+|+|++|.+++.+|+..
T Consensus        91 d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~  132 (186)
T 2yvu_A           91 SFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPK  132 (186)
T ss_dssp             ECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHH
T ss_pred             eCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhh
Confidence            9988887788777776 6556677899999999999999753

>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A*

Probab=99.01  E-value=1.2e-10  Score=120.10  Aligned_cols=121  Identities=10%  Similarity=0.037  Sum_probs=87.5

Q ss_pred             CCccCCCCCchhhH-HHHHHHHhh---cCCCCCCCCCCcccCCCC--C-CcccccccccccCcceecccccccc------
Q 006654          187 HGSFGQKNPDAKIQ-LGIMKFLKK---VDAPSNTGSTASSTQDPV--P-PQITEEKNSCLEGQEITSLLSDAAG------  253 (636)
Q Consensus       187 hgc~~~~~~~~~v~-~~i~k~l~~---~g~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~------  253 (636)
                      .|++|. +++.++| ..+.+..++   .|+ .++|.- + ++..-  + -.+.+.++.|.++-|.+-++++...      
T Consensus        86 gGGVd~-AI~raaGg~~l~~ec~~~~~~g~-~~~G~a-~-iT~~~~~~~~~~~~~~L~~k~VIHtvgp~~~~~~~~d~~~  161 (284)
T 1njr_A           86 GGGFDK-ALYNYFGGKPFETWFRNQLGGRY-HTVGSA-T-VVDLQRCLEEKTIECRDGIRYIIHVPTVVAPSAPIFNPQN  161 (284)
T ss_dssp             CSSHHH-HHHHHHTSHHHHHHHHHHTTTSC-CCTTCC-E-EEEGGGGGCC----CCTTEEEEEECCCBSCSSSCSCCTTC
T ss_pred             CchHHH-HHHHhhCcHHHHHHHHHHHhcCC-CCCCeE-E-EEECCcccccccchhcCCCCEEEEeCCCccCCCCCccccc
Confidence            577877 8999875 666776655   344 455641 1 11100  0 0011127788888888888776421      


Q ss_pred             --hhhcccCChhhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcC
Q 006654          254 --EEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG  312 (636)
Q Consensus       254 --~~~~~~l~~~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~  312 (636)
                        ....+.+..||.+||.+| +++++|||||+||||+||||.++||+++++++++|+..++
T Consensus       162 p~~~~~~~L~~~~~~~L~~a-e~~i~SIAfPaIsTGv~G~P~~~aA~i~~~av~~f~~~~~  221 (284)
T 1njr_A          162 PLKTGFEPVFNAMWNALMHS-PKDIDGLIIPGLCTGYAGVPPIISCKSMAFALRLYMAGDH  221 (284)
T ss_dssp             HHHHTHHHHHHHHHHHHHTS-CTTCSEEEECCTTCSTTCCCHHHHHHHHHHHHHHHHTGGG
T ss_pred             ccccHHHHHHHHHHHHHHHH-HhCCCEEEECcccccCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence              023467888999999999 9999999999999999999999999999999999998765

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=98.97  E-value=9.9e-10  Score=104.82  Aligned_cols=96  Identities=15%  Similarity=0.160  Sum_probs=63.0

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC-cH------------HHHHHHHHHHHhCCCeEEEeC-
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-TK------------VQCLTSASSALKKGKSVFLDR-   85 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~-~~------------~~~~~~~~~~L~~G~~VIID~-   85 (636)
                      +.+|+|+|+|||||||+|+.|++.++  +.+++.|.+.....+ +.            ......+...+.....+|++. 
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~--~~~i~~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~g   82 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTK--RILYDSDKEIEKRTGADIAWIFEMEGEAGFRRREREMIEALCKLDNIILATG   82 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHC--CCEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCEEECC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC--CCEEEChHHHHHHcCCChhhHHHHhCHHHHHHHHHHHHHHHHhcCCcEEecC
Confidence            56789999999999999999999998  667888887543222 00            111123333343334444444 


Q ss_pred             --CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHH
Q 006654           86 --CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSV  123 (636)
Q Consensus        86 --tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~  123 (636)
                        ..+....|..+...   +   .+|+|++|.+++.+|+.
T Consensus        83 g~~~~~~~~~~~l~~~---~---~vi~L~~~~e~l~~Rl~  116 (185)
T 3trf_A           83 GGVVLDEKNRQQISET---G---VVIYLTASIDTQLKRIG  116 (185)
T ss_dssp             TTGGGSHHHHHHHHHH---E---EEEEEECCHHHHHHHHH
T ss_pred             CceecCHHHHHHHHhC---C---cEEEEECCHHHHHHHHh
Confidence              34555555544222   2   48899999999999993

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.95  E-value=2.9e-09  Score=101.39  Aligned_cols=143  Identities=24%  Similarity=0.349  Sum_probs=105.3

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC----C--CCCc----HHHHHHHHHHHHhCCCeEEEeCCCC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK----G--KSGT----KVQCLTSASSALKKGKSVFLDRCNL   88 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~----~--~~~~----~~~~~~~~~~~L~~G~~VIID~tn~   88 (636)
                      +..++.|+|++|||||||++.+...    ...++.|.++.    .  ....    ...+...+...+..|..+++|.++.
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~~~~~----~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   83 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKKHFKP----TEVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVDATNV   83 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHSCG----GGEEEHHHHHHHHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCCEEEESCCC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHccC----CeEEccHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHhCCCeEEEECCCC
Confidence            5678999999999999999986522    34466666541    1  1111    1223345566678899999999999


Q ss_pred             CHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCC---CccCCccEEEEeC
Q 006654           89 EREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELP---KLSEGFSRITLCQ  164 (636)
Q Consensus        89 ~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P---~~~Egfd~Viii~  164 (636)
                      ....++.+..+ +.......+++||.|...|-.|+..|..+      .++++++.++...+...   ...+|+.-|++..
T Consensus        84 ~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~------~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH  157 (171)
T 4gp7_A           84 QESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDR------QVEEYVIRKHTQQMKKSIKGLQREGFRYVYILN  157 (171)
T ss_dssp             SHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSC------CCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEEC
T ss_pred             CHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCC------CCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeC
Confidence            98888888888 77888889999999999999999999864      67888888877654321   1256888887777


Q ss_pred             ChhHHHH
Q 006654          165 NENDVQA  171 (636)
Q Consensus       165 ~~~~vda  171 (636)
                      +.+.++.
T Consensus       158 ~~~~~~~  164 (171)
T 4gp7_A          158 SPEEVEE  164 (171)
T ss_dssp             SHHHHHH
T ss_pred             CHHHhhh
Confidence            7666553

>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*

Probab=98.94  E-value=1.7e-10  Score=113.26  Aligned_cols=49  Identities=27%  Similarity=0.284  Sum_probs=46.6

Q ss_pred             hHHHHHHHHHhcCccCCCCCeEEEcCcEEEeccCCCCCcccccccCCCCc
Q 006654          558 GSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKVHPSDNLPPGTLL  607 (636)
Q Consensus       558 ~~~~~a~~~~~~~p~~~~~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~~~  607 (636)
                      .||++||+.||.+||+|++ ++|.||++|+|.|.||+|..|+|||||..-
T Consensus         4 msw~~~L~~yi~~Pe~~p~-~v~edd~~~af~D~~P~a~~H~LVIPk~h~   52 (204)
T 3sp4_A            4 MSFRDNLKVYIESPESYKN-VIYYDDDVVLVRDMFPKSKMHLLLMTRDPH   52 (204)
T ss_dssp             CSGGGTTHHHHHCGGGCTT-EEEECSSEEEEECSSCSSSSEEEEEECCTT
T ss_pred             CcHHHHHHHHhcChhhCCC-EEEEcCCEEEEeCCCCCCCccEEEEecccc
Confidence            4699999999999999988 999999999999999999999999999864

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=98.93  E-value=6.5e-09  Score=101.94  Aligned_cols=106  Identities=17%  Similarity=0.166  Sum_probs=76.5

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcC----CCeEEeehhhhcCCCCC----c-H--HH----HHHHHHHHHhCCCeE
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA----RPWARICQDTINKGKSG----T-K--VQ----CLTSASSALKKGKSV   81 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~----~~~~~Is~D~ir~~~~~----~-~--~~----~~~~~~~~L~~G~~V   81 (636)
                      ..++.+|+|+|+|||||||+++.|++.++    .++.+++.|.++.....    . .  ..    +...+...+..|..|
T Consensus        22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~g~~V  101 (211)
T 1m7g_A           22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNENIRRIAEVAKLFADSNSIA  101 (211)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhhccccCCCHHHHHHHHHHHHHHHHHHHHCCCEE
Confidence            35678999999999999999999998654    44778898888753211    1 1  11    223345667889999


Q ss_pred             EEeCCCCCHHHHHHHHHh-C------CCCCeEEEEEEeCCHHHHHHHH
Q 006654           82 FLDRCNLEREQRTDFVKL-G------GPEVDVHAVVLDLPAKLCISRS  122 (636)
Q Consensus        82 IID~tn~~~~~R~~l~~l-~------~~g~~v~vV~Ld~p~e~l~~R~  122 (636)
                      |+|........|..+..+ .      ..+.+..+|+|++|.+++.+|+
T Consensus       102 I~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~  149 (211)
T 1m7g_A          102 ITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD  149 (211)
T ss_dssp             EEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC
T ss_pred             EEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh
Confidence            999654445667666665 4      3345678999999999999994

>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A*

Probab=98.91  E-value=9.7e-11  Score=113.67  Aligned_cols=116  Identities=12%  Similarity=0.088  Sum_probs=83.4

Q ss_pred             CccCCCCCchhhHHHHHHHHhh----cCCCCCCCCCCcccCCCCCCcccccccccccCcceecccccccchhhcccCChh
Q 006654          188 GSFGQKNPDAKIQLGIMKFLKK----VDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPE  263 (636)
Q Consensus       188 gc~~~~~~~~~v~~~i~k~l~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  263 (636)
                      |+.+. +++.++|.+|++-.++    .| ..++|. ++        .|.+.++ +.++-|.+-+.|..  .+.+++|..|
T Consensus        53 gGV~~-AI~~aaG~~l~~ec~~~~~~~g-~~~~G~-a~--------iT~~~~L-~~~VIH~vgP~~~~--~~~~~~L~~~  118 (182)
T 2acf_A           53 GGVAG-ALNKATNGAMQKESDDYIKLNG-PLTVGG-SC--------LLSGHNL-AKKCLHVVGPNLNA--GEDIQLLKAA  118 (182)
T ss_dssp             SHHHH-HHHHHTTTHHHHHHHHHHHHHC-CCCTTC-EE--------EEECTTT-CSEEEEECCCCGGG--TCCTTHHHHH
T ss_pred             chHHH-HHHHHhCHHHHHHHHHHHHHcC-CCCCCc-EE--------EeeCCCC-CceEEEECCCCCCC--CchHHHHHHH
Confidence            56666 8899999999876664    23 445564 11        1333444 34566766666654  3345677788


Q ss_pred             hhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCCeEEEEeccCcchhhhh
Q 006654          264 VASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLTQGSKILS  329 (636)
Q Consensus       264 ~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~~~~~v~~~~~~~s~~Ls  329 (636)
                      |.+|      ++++|||||+||||+||||.++||+++++++++      .+.++..|...|...|.
T Consensus       119 y~~~------~~~~SIAfP~IstGi~G~p~~~aa~i~~~~v~~------~V~~v~~d~~~y~~~l~  172 (182)
T 2acf_A          119 YENF------NSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRT------QVYIAVNDKALYEQVVM  172 (182)
T ss_dssp             HHGG------GGSSEEEECCTTCGGGCCCHHHHHHHHHHHCCS------EEEEEESCHHHHHHHHH
T ss_pred             HHHh------cCCCEEEECCcccCCCCCCHHHHHHHHHHHHhC------cEEEEECCHHHHHHHHH
Confidence            8876      689999999999999999999999999999985      46666666666666664

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=98.91  E-value=2.9e-09  Score=101.64  Aligned_cols=118  Identities=19%  Similarity=0.179  Sum_probs=71.3

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCc-------------HHHHH-HHHHHHHhCCCeEEEeC
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT-------------KVQCL-TSASSALKKGKSVFLDR   85 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~-------------~~~~~-~~~~~~L~~G~~VIID~   85 (636)
                      +.+|+|+|+|||||||+|+.|++.++  +.+++.|.+.....+.             ..... ..+.+.+.....||.++
T Consensus         2 ~~~I~l~G~~GsGKsT~a~~La~~lg--~~~id~D~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~g   79 (184)
T 2iyv_A            2 APKAVLVGLPGSGKSTIGRRLAKALG--VGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLG   79 (184)
T ss_dssp             CCSEEEECSTTSSHHHHHHHHHHHHT--CCEEEHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCSEEECC
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcC--CCEEeCchHHHHHcCCCHHHHHHHhChHHHHHHHHHHHHHHHhcCCeEEecC
Confidence            44689999999999999999999998  6678988875321110             00111 22233333333344444


Q ss_pred             C--CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhh
Q 006654           86 C--NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQK  147 (636)
Q Consensus        86 t--n~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~  147 (636)
                      .  .+....|..+   . .+   .+|+|++|.+++.+|+..|..++.. ......+.++.++..
T Consensus        80 ~~~v~~~~~~~~l---~-~~---~vV~L~~~~e~~~~Rl~~r~~r~~~-~~~~~~~~i~~~~~~  135 (184)
T 2iyv_A           80 GGAVTSPGVRAAL---A-GH---TVVYLEISAAEGVRRTGGNTVRPLL-AGPDRAEKYRALMAK  135 (184)
T ss_dssp             TTGGGSHHHHHHH---T-TS---CEEEEECCHHHHHHHTTCCCCCSST-TSCCHHHHHHHHHHH
T ss_pred             CcEEcCHHHHHHH---c-CC---eEEEEeCCHHHHHHHHhCCCCCCCc-cCCCHHHHHHHHHHH
Confidence            2  2334444433   3 33   3789999999999999988643321 112345566666543

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=98.91  E-value=3.4e-09  Score=107.58  Aligned_cols=126  Identities=12%  Similarity=0.181  Sum_probs=83.2

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc--CCC----------------------------CCcHHHHHHH
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN--KGK----------------------------SGTKVQCLTS   70 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir--~~~----------------------------~~~~~~~~~~   70 (636)
                      .+|+|+|+|||||||+|+.|++.++  +.+++.|.+.  .+.                            ........+.
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~--~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~   79 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETG--WPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRR   79 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHC--CCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCC--CeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHH
Confidence            4789999999999999999999988  5567766642  100                            0111222222


Q ss_pred             HH---HHHhCCCeEEEeCCCCCHHHHHHHHHh-CC----CCCeEEEEEEeCCH-HHHHHHHHhcccccCCCCCCChHHHH
Q 006654           71 AS---SALKKGKSVFLDRCNLEREQRTDFVKL-GG----PEVDVHAVVLDLPA-KLCISRSVKRIEHEGNLQGGKAAAVV  141 (636)
Q Consensus        71 ~~---~~L~~G~~VIID~tn~~~~~R~~l~~l-~~----~g~~v~vV~Ld~p~-e~l~~R~~~R~~~~~~~~~~vp~evi  141 (636)
                      +.   +.+..|..+|+++... . .   +..+ ..    .++.+.++++++|. +++.+|+.+|..... ....++++++
T Consensus        80 ~~~~i~~~~~g~~vIl~gg~~-~-~---~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~~~ml-~~~~~~~~~l  153 (253)
T 2ze6_A           80 LIFEVDWRKSEEGLILEGGSI-S-L---LNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRVAEMF-AIREDRPSLL  153 (253)
T ss_dssp             HHHHHHTTTTSSEEEEEECCH-H-H---HHHHHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHHHHHHH-CCCSSSCCHH
T ss_pred             HHHHHHHHhCCCCeEEeccHH-H-H---HHHHHhcccccccCceEEEEecchhHHHHHHHHHHHHHHHH-hcCcccchHH
Confidence            22   4447788888886432 1 1   1222 33    56677899999997 999999999976310 1124556778


Q ss_pred             HHHHhhhcCCCcc
Q 006654          142 NRMLQKKELPKLS  154 (636)
Q Consensus       142 ~rm~~~fe~P~~~  154 (636)
                      +.+...|+.|...
T Consensus       154 ~e~~~~~~~p~~~  166 (253)
T 2ze6_A          154 EELAELWNYPAAR  166 (253)
T ss_dssp             HHHHHHHTSTTHH
T ss_pred             HHHHHhcCCcchH
Confidence            8888888887754

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=98.89  E-value=4.3e-09  Score=102.71  Aligned_cols=105  Identities=13%  Similarity=0.152  Sum_probs=65.8

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCC---------------------CeEEeehhhhcC----CCCCc--------H
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR---------------------PWARICQDTINK----GKSGT--------K   64 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~---------------------~~~~Is~D~ir~----~~~~~--------~   64 (636)
                      .++.+|+|+|+|||||||+++.|++.++.                     .+..++.|.+..    +.+..        .
T Consensus        10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (204)
T 2qor_A           10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFY   89 (204)
T ss_dssp             CCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCee
Confidence            45678999999999999999999988742                     223334444321    11100        0


Q ss_pred             HHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHhCCCC-CeEEEEEEe-CCHHHHHHHHHhccc
Q 006654           65 VQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPE-VDVHAVVLD-LPAKLCISRSVKRIE  127 (636)
Q Consensus        65 ~~~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l~~~g-~~v~vV~Ld-~p~e~l~~R~~~R~~  127 (636)
                      ......+...+..|+.||+|...   .....+.  ...+ ....+||++ +|.+++.+|+..|..
T Consensus        90 ~~~~~~i~~~l~~g~~vi~d~~~---~~~~~l~--~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~  149 (204)
T 2qor_A           90 GTLKSEYDLAVGEGKICLFEMNI---NGVKQLK--ESKHIQDGIYIFVKPPSIDILLGRLKNRNT  149 (204)
T ss_dssp             EEEHHHHHHHHHTTCEEEEECCH---HHHHHHH--HCSSCSCCEEEEEECSCHHHHHHHHHTCTT
T ss_pred             cCCHHHHHHHHHcCCeEEEEECH---HHHHHHH--HhcCCCCeEEEEEcCCCHHHHHHHHHHcCC
Confidence            00113456677899999999732   2222222  2221 123578888 899999999998864

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.88  E-value=2.1e-08  Score=97.43  Aligned_cols=104  Identities=20%  Similarity=0.229  Sum_probs=76.2

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCCC---C-cH---H----HHHHHHHHHHhCCCeEE
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKS---G-TK---V----QCLTSASSALKKGKSVF   82 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~~---~-~~---~----~~~~~~~~~L~~G~~VI   82 (636)
                      ..++.+|+|+|+|||||||+++.|+..+   |.....++.|.++....   + ..   .    .....+......|..+|
T Consensus        22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi  101 (200)
T 3uie_A           22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNRDLSFKAEDRAENIRRVGEVAKLFADAGIICI  101 (200)
T ss_dssp             TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHhhcccCcChHHHHHHHHHHHHHHHHHHhCCceEE
Confidence            3567899999999999999999999887   42223788888864321   1 11   1    11133344456788899


Q ss_pred             EeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHH
Q 006654           83 LDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRS  122 (636)
Q Consensus        83 ID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~  122 (636)
                      ++..+..+..|..+..+ ..  ..+..|||++|.+++.+|.
T Consensus       102 ~~~~~~~~~~r~~~~~~~~~--~~~~~v~L~a~~e~~~~R~  140 (200)
T 3uie_A          102 ASLISPYRTDRDACRSLLPE--GDFVEVFMDVPLSVCEARD  140 (200)
T ss_dssp             EECCCCCHHHHHHHHHTSCT--TSEEEEEECCCHHHHHHHC
T ss_pred             EecCCchHHHHHHHHHhcCC--CCEEEEEEeCCHHHHHHhc
Confidence            99888888889888777 53  3466799999999999997

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=98.88  E-value=7.8e-09  Score=98.66  Aligned_cols=120  Identities=17%  Similarity=0.190  Sum_probs=71.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhc-------------CCCCCcH-----------HHHHHHHHHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN-------------KGKSGTK-----------VQCLTSASSA   74 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir-------------~~~~~~~-----------~~~~~~~~~~   74 (636)
                      +|+|.|+|||||||+|+.|++.+   +  +.+++.|...             ++.....           ..+...+...
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g--~~~i~~d~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~~i~~~   79 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQKG--YFVSLYREPGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEEKIIPD   79 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHTT--CCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999987   6  4455544211             1111111           0111233456


Q ss_pred             HhCCCeEEEeCC------------CCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHH
Q 006654           75 LKKGKSVFLDRC------------NLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV  141 (636)
Q Consensus        75 L~~G~~VIID~t------------n~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi  141 (636)
                      +..|..||+|..            .........+..+ ......-.+|+|++|.+++.+|+..|...      . ..+..
T Consensus        80 l~~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~~------~-~~~~~  152 (195)
T 2pbr_A           80 LKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKNRF------E-NKEFL  152 (195)
T ss_dssp             HHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTTCC------C-CHHHH
T ss_pred             HhCCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccCcc------c-hHHHH
Confidence            778899999942            2222233333222 21111225889999999999999865331      2 45566


Q ss_pred             HHHHhhhcC
Q 006654          142 NRMLQKKEL  150 (636)
Q Consensus       142 ~rm~~~fe~  150 (636)
                      .++...|+.
T Consensus       153 ~~~~~~~~~  161 (195)
T 2pbr_A          153 EKVRKGFLE  161 (195)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666555544

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=98.87  E-value=1.2e-08  Score=115.97  Aligned_cols=106  Identities=20%  Similarity=0.282  Sum_probs=81.5

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCCCC----c---HH----HHHHHHHHHHhCCCeEEEe
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSG----T---KV----QCLTSASSALKKGKSVFLD   84 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~~~----~---~~----~~~~~~~~~L~~G~~VIID   84 (636)
                      ++.+|+|+|+|||||||+|+.|++.+   +.++..++.|.++.....    .   ..    .+...+...+..|..||.|
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~r~i~eva~~~l~~G~iVI~d  130 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITS  130 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHHHHHHHHHHHHHhCCCEEEEe
Confidence            68899999999999999999999988   767888888888754221    1   11    1223334456788888888


Q ss_pred             CCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHh
Q 006654           85 RCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVK  124 (636)
Q Consensus        85 ~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~  124 (636)
                      .....+..|..+..+ ...+.++.+|+|++|.++|.+|+.+
T Consensus       131 ~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r  171 (630)
T 1x6v_B          131 FISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVK  171 (630)
T ss_dssp             CCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTT
T ss_pred             CchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhcc
Confidence            655556678888888 7777778899999999999999764

>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A*

Probab=98.84  E-value=3.9e-10  Score=110.05  Aligned_cols=109  Identities=12%  Similarity=0.116  Sum_probs=81.5

Q ss_pred             CCccCCCCCchhhHHHHHHHHhhc----CCCCCCCCCCcccCCCCCCcccccccccccCcceecccccccchhhcccCCh
Q 006654          187 HGSFGQKNPDAKIQLGIMKFLKKV----DAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENP  262 (636)
Q Consensus       187 hgc~~~~~~~~~v~~~i~k~l~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  262 (636)
                      .|+.+. +++.++|.+|++..++.    | ..++|. ++        .|.+.++   ++-|.+-|.|+.   ..+++|..
T Consensus        70 ggGV~~-AI~~aaG~~l~~ec~~l~~~~g-~~~~G~-a~--------iT~~~~L---~VIHtVGP~~~~---~~~~~L~~  132 (193)
T 3ejg_A           70 GGGLAK-ALDVYTKGKLQRLSKEHIGLAG-KVKVGT-GV--------MVECDSL---RIFNVVGPRKGK---HERDLLIK  132 (193)
T ss_dssp             CSHHHH-HHHHHTTTHHHHHHHHHHHHHC-SCCTTC-EE--------EEEETTE---EEEEEECCCSST---THHHHHHH
T ss_pred             CchHHH-HHHHHhhHHHHHHHHHHHHHcC-CCCCCC-EE--------EecCCCe---eEEEecCCCCCc---hHHHHHHH
Confidence            466767 89999999999877653    4 456664 22        1333444   677777777753   45678999


Q ss_pred             hhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCCeEEEEeccC
Q 006654          263 EVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLT  322 (636)
Q Consensus       263 ~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~~~~~v~~~~~  322 (636)
                      ||.+||..     .+|||||+||||+||||.++||++++++++++     .+.+++++..
T Consensus       133 ~y~~~L~~-----~~SIAfPaIstGi~G~P~~~aa~ial~~v~~~-----~V~fv~f~~~  182 (193)
T 3ejg_A          133 AYNTINNE-----QGTPLTPILSCGIFGIKLETSLEVLLDVCNTK-----EVKVFVYTDT  182 (193)
T ss_dssp             HHHHHHHS-----SSCEEECCTTCGGGCCCHHHHHHHHHHHCCSS-----CEEEEECSHH
T ss_pred             HHHHHHHh-----cCceeecccccCCCCCCHHHHHHHHHHHHhcC-----eEEEEEcCHH
Confidence            99999984     26999999999999999999999999999972     5667665443

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=98.84  E-value=3.8e-09  Score=98.96  Aligned_cols=98  Identities=18%  Similarity=0.166  Sum_probs=64.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC-----------c--HHHHHHHHHHHHhCCCeEEEe-C--
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-----------T--KVQCLTSASSALKKGKSVFLD-R--   85 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~-----------~--~~~~~~~~~~~L~~G~~VIID-~--   85 (636)
                      .|+|.|+|||||||+|+.|++.++  +.+++.|.+.....+           .  .......+...|.....+||+ +  
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~--~~~i~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~Vi~~g~~   79 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLN--IPFYDVDEEVQKREGLSIPQIFEKKGEAYFRKLEFEVLKDLSEKENVVISTGGG   79 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHT--CCEEEHHHHHHHHHTSCHHHHHHHSCHHHHHHHHHHHHHHHTTSSSEEEECCHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC--CCEEECcHHHHHHcCCCHHHHHHHhChHHHHHHHHHHHHHHhccCCeEEECCCC
Confidence            589999999999999999999988  567888877422111           0  111223344456544556665 3  


Q ss_pred             CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           86 CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        86 tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      ..+....+..+   ...+   .+|+|++|.+++.+|+..|..
T Consensus        80 ~~~~~~~~~~l---~~~~---~~i~l~~~~e~~~~R~~~r~~  115 (168)
T 2pt5_A           80 LGANEEALNFM---KSRG---TTVFIDIPFEVFLERCKDSKE  115 (168)
T ss_dssp             HHTCHHHHHHH---HTTS---EEEEEECCHHHHHHHCBCTTC
T ss_pred             EeCCHHHHHHH---HcCC---EEEEEECCHHHHHHHHhCCCC
Confidence            23444444433   2222   488999999999999988753

>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}

Probab=98.83  E-value=4.2e-10  Score=122.84  Aligned_cols=75  Identities=12%  Similarity=0.093  Sum_probs=61.1

Q ss_pred             cccccccchhh-cccCChhhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCC-eEEEEecc
Q 006654          246 SLLSDAAGEEV-KGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGN-ARLVLVDL  321 (636)
Q Consensus       246 ~~~~~~~~~~~-~~~l~~~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~~-~~~v~~~~  321 (636)
                      -++|..+.+.. .++|..||.++|++|.+++++|||||.||||+||||++ ++.|+++++.+|+.+++- +.+|+.|.
T Consensus       412 GPvw~~g~~~E~~~lLascYrnsLkLA~e~~~kSIAFPLISTGIYG~PKd-al~IAl~~I~~fL~~~D~dV~IvcfDK  488 (670)
T 4gua_A          412 GPDFRKHPEAEALKLLQNAYHAVADLVNEHNIKSVAIPLLSTGIYAAGKD-RLEVSLNCLTTALDRTDADVTIYCLDK  488 (670)
T ss_dssp             CCCTTSSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSSTTTTSC-CHHHHHHHHHHHHTTSSCEEEEECSCH
T ss_pred             CCCccCCCCchHHHHHHHHHHHHHHHHHHcCCcEEEEccccccCCCCCHH-HHHHHHHHHHHHHhccCCEEEEEEecC
Confidence            35555444433 46899999999999999999999999999999999987 589999999999998753 45555543

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.83  E-value=1.7e-08  Score=111.43  Aligned_cols=110  Identities=17%  Similarity=0.205  Sum_probs=71.7

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhcCCC------------CCc-HHH--------HHHHHH
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGK------------SGT-KVQ--------CLTSAS   72 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir~~~------------~~~-~~~--------~~~~~~   72 (636)
                      ..++.+|+|+|+|||||||++++|++.++   .+...++.|.++...            .+. ...        .+..+.
T Consensus        36 ~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~  115 (469)
T 1bif_A           36 TNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR  115 (469)
T ss_dssp             --CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            35678999999999999999999998764   235556655554210            111 011        112224


Q ss_pred             HHH--hCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCC-HHHHHHHHHhcc
Q 006654           73 SAL--KKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLP-AKLCISRSVKRI  126 (636)
Q Consensus        73 ~~L--~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p-~e~l~~R~~~R~  126 (636)
                      ..+  ..|..+|+|.+|...+.|..|.++ ++.+..+..+.+.++ .+++.+|...|.
T Consensus       116 ~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~~~~  173 (469)
T 1bif_A          116 KFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQVK  173 (469)
T ss_dssp             HHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHHT
T ss_pred             HHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHhh
Confidence            455  456789999999999999999888 766765554444445 555555655443

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.83  E-value=5.7e-08  Score=93.05  Aligned_cols=107  Identities=21%  Similarity=0.207  Sum_probs=73.1

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCC----CCc---H-------HHHHHHHHHHHhCCCeEEEeC
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK----SGT---K-------VQCLTSASSALKKGKSVFLDR   85 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~----~~~---~-------~~~~~~~~~~L~~G~~VIID~   85 (636)
                      ..+++|+|+|||||||+++.|+...+ ....++.|.+....    ...   .       +.+...+...+..+..+|+|.
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~~~-g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ild~   80 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQLD-NSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTVNFLLAQNDVVLDY   80 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSS-SEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTCEEEEES
T ss_pred             CeEEEEECCCCCcHHHHHHHHhcccC-CeEEEcccchhhhhccccccCccchhHHHHHHHHHHHHHHHHHhcCCcEEEee
Confidence            46899999999999999999998654 24678888775321    111   0       112233344456778899998


Q ss_pred             CCCCHHHHHHHHHh-C--CCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654           86 CNLEREQRTDFVKL-G--GPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (636)
Q Consensus        86 tn~~~~~R~~l~~l-~--~~g~~v~vV~Ld~p~e~l~~R~~~R~~~  128 (636)
                      . .....+..+.++ +  ..+..+.+++|.+|.+.+.+|...|...
T Consensus        81 ~-~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d  125 (189)
T 2bdt_A           81 I-AFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKD  125 (189)
T ss_dssp             C-CCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-
T ss_pred             c-cCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhcccc
Confidence            5 455555555454 3  3344567788999999999999988653

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=98.80  E-value=4.4e-08  Score=93.16  Aligned_cols=107  Identities=20%  Similarity=0.326  Sum_probs=69.5

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCCC---C-c---HHHHHHH---HHHHH-hCCCeEEEe
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKS---G-T---KVQCLTS---ASSAL-KKGKSVFLD   84 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~~---~-~---~~~~~~~---~~~~L-~~G~~VIID   84 (636)
                      ++.+|+|+|++||||||+++.|++.+   +.++..++.|.++....   + .   ....+..   ....+ ..|..++.+
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITS   83 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhccccccccHHHHHHHHHHHHHHHHHCCCEEEEe
Confidence            46789999999999999999999876   66677778887764321   1 1   1111111   12223 555444444


Q ss_pred             CCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhc
Q 006654           85 RCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKR  125 (636)
Q Consensus        85 ~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R  125 (636)
                      ........+..+..+ ...+....+|+|++|.+++.+|+.+|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~  125 (179)
T 2pez_A           84 FISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKG  125 (179)
T ss_dssp             CCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTS
T ss_pred             cCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhh
Confidence            443334445555555 44556667899999999999998654

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=98.77  E-value=7.5e-09  Score=100.57  Aligned_cols=126  Identities=17%  Similarity=0.098  Sum_probs=72.6

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc-----------------CCCCCcH---HHHH--------H
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-----------------KGKSGTK---VQCL--------T   69 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir-----------------~~~~~~~---~~~~--------~   69 (636)
                      .++.+|+|.|+|||||||+|+.|++.++...  ++.|.++                 .+.....   ..++        .
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~--~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNN--VEVKHLYFPNRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMN   85 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcC--CcEEEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            3567999999999999999999999876221  2212111                 1110111   0111        1


Q ss_pred             HHHHHHhCCCeEEEeCCCCCH----HHH----HHHHH-h-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHH
Q 006654           70 SASSALKKGKSVFLDRCNLER----EQR----TDFVK-L-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAA  139 (636)
Q Consensus        70 ~~~~~L~~G~~VIID~tn~~~----~~R----~~l~~-l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~e  139 (636)
                      .+...+..|..||+|+++...    ..+    ..|+. + ......-.+|+|++|.+++.+|+..|..+   .  . ..+
T Consensus        86 ~i~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~r---~--~-~~~  159 (212)
T 2wwf_A           86 EIKSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGEEI---Y--E-KVE  159 (212)
T ss_dssp             HHHHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTSST---T--C-SHH
T ss_pred             HHHHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCccc---c--c-HHH
Confidence            345566788899999865431    111    23332 2 22122235889999999999998765321   1  1 245


Q ss_pred             HHHHHHhhhcCC
Q 006654          140 VVNRMLQKKELP  151 (636)
Q Consensus       140 vi~rm~~~fe~P  151 (636)
                      ...++...|+.+
T Consensus       160 ~~~~~~~~~~~~  171 (212)
T 2wwf_A          160 TQKKIYETYKHF  171 (212)
T ss_dssp             HHHHHHHHGGGG
T ss_pred             HHHHHHHHHHHH
Confidence            556665555443

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=98.76  E-value=5.5e-08  Score=97.28  Aligned_cols=134  Identities=16%  Similarity=0.226  Sum_probs=75.9

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh-------------hhhcCCC-CCcHHH-HH----------HH
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-------------DTINKGK-SGTKVQ-CL----------TS   70 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~-------------D~ir~~~-~~~~~~-~~----------~~   70 (636)
                      ...+..+|++.|+|||||||+++.|++.++..+.++..             +.+.++. ...... ++          ..
T Consensus        22 ~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~~~~~~  101 (229)
T 4eaq_A           22 SNAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLK  101 (229)
T ss_dssp             CCCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEECTTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHCCCC
T ss_pred             ecCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeecCCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            44567899999999999999999999987521112211             1111221 111111 11          11


Q ss_pred             HHHHHhCCCeEEEe----------CC--CCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCh
Q 006654           71 ASSALKKGKSVFLD----------RC--NLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKA  137 (636)
Q Consensus        71 ~~~~L~~G~~VIID----------~t--n~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp  137 (636)
                      +..+|..|..||+|          +.  ++.......+..+ .....+-.+++|++|.+++.+|+..|...... .+...
T Consensus       102 i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~dr-~e~~~  180 (229)
T 4eaq_A          102 VIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNR-LDQED  180 (229)
T ss_dssp             CHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-----C-CCHHH
T ss_pred             HHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCccc-hhhhh
Confidence            23566789999999          54  3444444444333 22223336889999999999999999653211 11124


Q ss_pred             HHHHHHHHhhhcC
Q 006654          138 AAVVNRMLQKKEL  150 (636)
Q Consensus       138 ~evi~rm~~~fe~  150 (636)
                      .+..++....|+.
T Consensus       181 ~~~~~rv~~~y~~  193 (229)
T 4eaq_A          181 LKFHEKVIEGYQE  193 (229)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            4555665555543

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.76  E-value=5.4e-09  Score=98.45  Aligned_cols=121  Identities=16%  Similarity=0.169  Sum_probs=67.9

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC-cHHHH------------HHHHHHHHhCCCeEEEeC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-TKVQC------------LTSASSALKKGKSVFLDR   85 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~-~~~~~------------~~~~~~~L~~G~~VIID~   85 (636)
                      ++.+|+|+|+|||||||+++.|+..++  +.+++.|.+.....+ ....+            ...+...+....++|+..
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~--~~~id~d~~~~~~~~~~i~~i~~~~g~~~~~~~~~~~l~~l~~~~~~v~~~   80 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLN--MEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLAT   80 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTT--CEEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTSSSEEEEC
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhC--CCEEeccHHHHHHhCcCHHHHHHHHhHHHHHHHHHHHHHHHHhCCCeEEEC
Confidence            456799999999999999999999988  667888776432111 11100            112233444455666652


Q ss_pred             ---CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhh
Q 006654           86 ---CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQK  147 (636)
Q Consensus        86 ---tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~  147 (636)
                         ..+....+..+.   ..+.   ++++++|.+++.+|+..|..++.........+.+..++..
T Consensus        81 ~~~~~~~~~~~~~l~---~~~~---~i~l~~~~~~l~~R~~~r~~r~~~~~~~~~~~~~~~~~~~  139 (173)
T 1kag_A           81 GGGSVKSRETRNRLS---ARGV---VVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANE  139 (173)
T ss_dssp             CTTGGGSHHHHHHHH---HHSE---EEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHHHH
T ss_pred             CCeEEecHHHHHHHH---hCCE---EEEEeCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHHHH
Confidence               333334443332   2232   7889999999999999886544321112214555555544

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=98.75  E-value=2.3e-08  Score=93.95  Aligned_cols=97  Identities=21%  Similarity=0.162  Sum_probs=63.6

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCc-H------------HHHHHHHHHHHhCCCeEEEeCC
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT-K------------VQCLTSASSALKKGKSVFLDRC   86 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~-~------------~~~~~~~~~~L~~G~~VIID~t   86 (636)
                      ..+|+|+|+|||||||+|+.|++.++  +.+++.|.+.....+. .            ......+...|. +..+||+..
T Consensus         2 ~~~I~l~G~~GsGKsT~a~~La~~lg--~~~id~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~vi~~g   78 (173)
T 1e6c_A            2 TEPIFMVGARGCGMTTVGRELARALG--YEFVDTDIFMQHTSGMTVADVVAAEGWPGFRRRESEALQAVA-TPNRVVATG   78 (173)
T ss_dssp             CCCEEEESCTTSSHHHHHHHHHHHHT--CEEEEHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHC-CSSEEEECC
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhC--CcEEcccHHHHHHhCCCHHHHHHHcCHHHHHHHHHHHHHHhh-cCCeEEECC
Confidence            34689999999999999999999998  6778888775321110 0            011123334455 445666632


Q ss_pred             ---CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHH--hc
Q 006654           87 ---NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSV--KR  125 (636)
Q Consensus        87 ---n~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~--~R  125 (636)
                         .+....+..+..   .+   .+|+|++|.+++.+|+.  .|
T Consensus        79 ~~~~~~~~~~~~l~~---~~---~~i~l~~~~e~~~~R~~~~~r  116 (173)
T 1e6c_A           79 GGMVLLEQNRQFMRA---HG---TVVYLFAPAEELALRLQASLQ  116 (173)
T ss_dssp             TTGGGSHHHHHHHHH---HS---EEEEEECCHHHHHHHHHHHHC
T ss_pred             CcEEeCHHHHHHHHc---CC---eEEEEECCHHHHHHHHhhccC
Confidence               234444443311   12   48899999999999999  77

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=98.71  E-value=5.8e-08  Score=94.30  Aligned_cols=108  Identities=14%  Similarity=0.110  Sum_probs=59.5

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCC---CeEEeeh--------hhh----cCCCCCcHH--H-H--------HHHH
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR---PWARICQ--------DTI----NKGKSGTKV--Q-C--------LTSA   71 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~---~~~~Is~--------D~i----r~~~~~~~~--~-~--------~~~~   71 (636)
                      .++.+|+|+|+|||||||+|+.|++.++.   ....+..        +.+    ..+......  . +        ...+
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i   86 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVPLI   86 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeCCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            34679999999999999999999987652   1211211        011    111111111  0 0        0234


Q ss_pred             HHHHhCCCeEEEeCCCCCHH---------HHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhc
Q 006654           72 SSALKKGKSVFLDRCNLERE---------QRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKR  125 (636)
Q Consensus        72 ~~~L~~G~~VIID~tn~~~~---------~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R  125 (636)
                      ...+..|..||+|...+..-         .+..+..+ ......-.+|+|++|.+++.+|+..|
T Consensus        87 ~~~l~~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~  150 (215)
T 1nn5_A           87 KEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFG  150 (215)
T ss_dssp             HHHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC----
T ss_pred             HHHHHCCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccC
Confidence            56678889999996321110         12222223 32222235889999999999998644

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=98.70  E-value=1.2e-07  Score=95.66  Aligned_cols=103  Identities=18%  Similarity=0.241  Sum_probs=65.8

Q ss_pred             cccCccEEEEEEccCCCcHHHHHHHHHHHcCCC--------eEEeehhhhcCCCC---------C--------c--HHHH
Q 006654           15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSARP--------WARICQDTINKGKS---------G--------T--KVQC   67 (636)
Q Consensus        15 ~~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~--------~~~Is~D~ir~~~~---------~--------~--~~~~   67 (636)
                      ....+|.+|.|.|+|||||||+|+.|++.++.+        ..+++.|.+.....         +        .  ...+
T Consensus        17 ~~~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~d~~~l   96 (252)
T 1uj2_A           17 PNGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELI   96 (252)
T ss_dssp             ----CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHH
T ss_pred             ccCCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhhhccCCCCCCCcchhhHHHH
Confidence            344567899999999999999999999988732        23789888864211         0        0  1111


Q ss_pred             HHHHHHHHh-------------------------CCCeEEEeCCCCC-HHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHH
Q 006654           68 LTSASSALK-------------------------KGKSVFLDRCNLE-REQRTDFVKLGGPEVDVHAVVLDLPAKLCISR  121 (636)
Q Consensus        68 ~~~~~~~L~-------------------------~G~~VIID~tn~~-~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R  121 (636)
                      ...+ +.+.                         ....||+|+..+. ...   +...  .+   .+|+|++|.+++.+|
T Consensus        97 ~~~L-~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~~~---~~~~--~d---~vi~l~~~~e~~~~R  167 (252)
T 1uj2_A           97 LKTL-KEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQE---VRDL--FQ---MKLFVDTDADTRLSR  167 (252)
T ss_dssp             HHHH-HHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSHH---HHHH--CS---EEEEEECCHHHHHHH
T ss_pred             HHHH-HHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccCHH---HHHh--cC---eeEEEeCCHHHHHHH
Confidence            2222 2232                         2346899996543 222   2222  12   378999999999999


Q ss_pred             HHhcc
Q 006654          122 SVKRI  126 (636)
Q Consensus       122 ~~~R~  126 (636)
                      +..|.
T Consensus       168 ~~~R~  172 (252)
T 1uj2_A          168 RVLRD  172 (252)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99885

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=98.69  E-value=1.1e-07  Score=91.11  Aligned_cols=97  Identities=19%  Similarity=0.207  Sum_probs=65.2

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH-cCCCeEEeehhhhcCC--C-----------CC---cHHHHHHHHHHHHhCCCeE
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS-SARPWARICQDTINKG--K-----------SG---TKVQCLTSASSALKKGKSV   81 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~-~~~~~~~Is~D~ir~~--~-----------~~---~~~~~~~~~~~~L~~G~~V   81 (636)
                      ++.+|+|+|+|||||||+++.|++. ++  +.+++.|.+...  .           ..   ........+...+..+.++
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g--~~~id~d~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~~~~~g~~   86 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAELDG--FQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLLDFMEPIMVSRGNH   86 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHHSTT--EEEEEHHHHHHHTTCSCC------CCCCCHHHHHHHHHHHHHHHTSSSEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCC--CEEeeHHHHHHHhhhhhhHHHHhhhcccCCCCHHHHHHHHHHHHhccCCE
Confidence            4568999999999999999999999 67  778898765311  0           00   1122234444555345578


Q ss_pred             EEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 006654           82 FLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRI  126 (636)
Q Consensus        82 IID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~  126 (636)
                      |+|..+...        +.... .-.+|+|++|.+++.+|+..|.
T Consensus        87 vi~~~~~~~--------~~~~~-~~~vi~l~~~~e~~~~Rl~~R~  122 (184)
T 1y63_A           87 VVDYHSSEL--------FPERW-FHMVVVLHTSTEVLFERLTKRQ  122 (184)
T ss_dssp             EEECSCCTT--------SCGGG-CSEEEEEECCHHHHHHHHHHTT
T ss_pred             EEeCchHhh--------hhhcc-CCEEEEEECCHHHHHHHHHhCC
Confidence            888754311        11110 1148899999999999999995

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.68  E-value=1.9e-07  Score=90.09  Aligned_cols=101  Identities=18%  Similarity=0.217  Sum_probs=60.6

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc-CC----CCC------c---HHHHH----------------
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-KG----KSG------T---KVQCL----------------   68 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir-~~----~~~------~---~~~~~----------------   68 (636)
                      +..++.|+|++||||||+++.|+..++  ...++...+. ..    ..+      .   .....                
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKALA--EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHY   83 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSS--SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEE
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCC--CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeecccc
Confidence            356899999999999999999998764  2233221111 00    000      0   01111                


Q ss_pred             ----HHHHHHHhCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           69 ----TSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        69 ----~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                          ..+.+.+..|..+|+|.      .+..+..+ ........++++.++.+++.+|+.+|..
T Consensus        84 ~~~~~~i~~~l~~g~~vi~d~------~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~  141 (205)
T 3tr0_A           84 GTEKDWVLRQLKAGRDVLLEI------DWQGARQIRELFPPALSIFILPPSIEALRERLIKRRQ  141 (205)
T ss_dssp             EEEHHHHHHHHHTTCEEEEEC------CHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHHTCTT
T ss_pred             cchHHHHHHHHHcCCeEEEEE------CHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHHhCC
Confidence                35667788999999997      22222223 2222223344445579999999999965

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=98.68  E-value=7.9e-08  Score=108.75  Aligned_cols=106  Identities=16%  Similarity=0.167  Sum_probs=80.0

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcC----CCeEEeehhhhcCCCCC----cH-HH------HHHHHHHHHhCCCe
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA----RPWARICQDTINKGKSG----TK-VQ------CLTSASSALKKGKS   80 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~----~~~~~Is~D~ir~~~~~----~~-~~------~~~~~~~~L~~G~~   80 (636)
                      ...++.+|+|+|+|||||||+|+.|++.++    .++.+++.|.++.+..+    .. +.      +...+...+..|..
T Consensus       392 ~gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~~~~~f~~~er~~~i~ri~~v~~~~~~~g~~  471 (573)
T 1m8p_A          392 RATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQRIAFVATELTRAGAA  471 (573)
T ss_dssp             TTTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTCCCSHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred             ccccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhccccCCChhHHHHHHHHHHHHHHHHHhCCCE
Confidence            345678999999999999999999999875    56788999988643211    11 11      11345556678889


Q ss_pred             EEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHH
Q 006654           81 VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRS  122 (636)
Q Consensus        81 VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~  122 (636)
                      ||+|..+..+..|..+.++ ...+ .+.+|||++|.++|.+|.
T Consensus       472 VI~~~is~~~~~R~~~r~l~~~~g-~~~~V~Lda~~ev~~~R~  513 (573)
T 1m8p_A          472 VIAAPIAPYEESRKFARDAVSQAG-SFFLVHVATPLEHCEQSD  513 (573)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHTTS-EEEEEEECCCHHHHHHHC
T ss_pred             EEEEcCCCcHHHHHHHHHHHHhcC-CeEEEEEeCCHHHHHHHh
Confidence            9999877778888888777 6544 467899999999999994

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=98.65  E-value=1.4e-08  Score=96.18  Aligned_cols=95  Identities=14%  Similarity=0.100  Sum_probs=61.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC-c------------HHHHHHHHHHHHhCCCeEEEe-CCC
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-T------------KVQCLTSASSALKKGKSVFLD-RCN   87 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~-~------------~~~~~~~~~~~L~~G~~VIID-~tn   87 (636)
                      .|+|+|+|||||||+|+.|++.++  +.+++.|.+.....+ .            .......+.+.+.....+|++ +..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~--~~~~d~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~~g~~   83 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLD--LVFLDSDFLIEQKFNQKVSEIFEQKRENFFREQEQKMADFFSSCEKACIATGGG   83 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT--CEEEEHHHHHHHHHTSCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEEEECCTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcC--CCEEcccHHHHHHcCCCHHHHHHHcCHHHHHHHHHHHHHHHHccCCEEEECCCC
Confidence            588999999999999999999998  677898887432111 0            011122333445545566666 322


Q ss_pred             CCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 006654           88 LEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRI  126 (636)
Q Consensus        88 ~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~  126 (636)
                      .... +.    ++..+   .+|+|++|.+++.+|+..|.
T Consensus        84 ~~~~-~~----l~~~~---~~i~l~~~~e~~~~R~~~r~  114 (175)
T 1via_A           84 FVNV-SN----LEKAG---FCIYLKADFEYLKKRLDKDE  114 (175)
T ss_dssp             GGGS-TT----GGGGC---EEEEEECCHHHHTTCCCGGG
T ss_pred             Eehh-hH----HhcCC---EEEEEeCCHHHHHHHHhccc
Confidence            2111 21    32222   47899999999999998874

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=98.65  E-value=6.3e-08  Score=92.04  Aligned_cols=97  Identities=15%  Similarity=0.173  Sum_probs=65.0

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC---------CC----CcHHHHHHHHHHHHhCCCeEEEeC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG---------KS----GTKVQCLTSASSALKKGKSVFLDR   85 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~---------~~----~~~~~~~~~~~~~L~~G~~VIID~   85 (636)
                      ++.+|+|+|+|||||||+++.|++.++  +.+++.|.+...         ..    .....+...+...+..|. +|+|.
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~vv~~   86 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELASKSG--LKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQMREGG-VIVDY   86 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHTCEEEEETTTTEEEECHHHHHHHHHHHHHHCC-EEEEC
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHhC--CeEEEHHHHHhhcchhhhhhhhhcCccCChHHHHHHHHHHHhcCC-EEEEe
Confidence            456789999999999999999999998  667887765211         00    112334555666666664 55676


Q ss_pred             CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           86 CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        86 tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      .+...        +.. .....+|+|++|.+++.+|+..|..
T Consensus        87 ~~~~~--------~~~-~~~~~vi~L~~~~e~l~~R~~~r~~  119 (180)
T 3iij_A           87 HGCDF--------FPE-RWFHIVFVLRTDTNVLYERLETRGY  119 (180)
T ss_dssp             SCCTT--------SCG-GGCSEEEEEECCHHHHHHHHHHTTC
T ss_pred             chhhh--------cch-hcCCEEEEEECCHHHHHHHHHHcCC
Confidence            43211        010 0112488999999999999999953

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=98.65  E-value=3.1e-07  Score=89.28  Aligned_cols=131  Identities=14%  Similarity=0.212  Sum_probs=77.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeE-Eee--------------------hhhh----cCCCCCcHH--------HHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWA-RIC--------------------QDTI----NKGKSGTKV--------QCL   68 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~-~Is--------------------~D~i----r~~~~~~~~--------~~~   68 (636)
                      .|+|+||+||||||++++|.+.++..+. .++                    .+.+    .++.+..+.        ...
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~~   82 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTV   82 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeeec
Confidence            4899999999999999999988642221 111                    1111    011100000        012


Q ss_pred             HHHHHHHhCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHh
Q 006654           69 TSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ  146 (636)
Q Consensus        69 ~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v-~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~  146 (636)
                      ..+...+.+|+.+|+|.      .++....+ ...+... .++.+.++.+++.+|+..|+.       +..+++-+|+.+
T Consensus        83 ~~v~~~l~~g~~vil~i------d~~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~-------e~~e~i~~Rl~~  149 (186)
T 1ex7_A           83 ASVKQVSKSGKTCILDI------DMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGT-------ETEESINKRLSA  149 (186)
T ss_dssp             HHHHHHHHHTSEEEEEC------CHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHCC-------SCHHHHHHHHHH
T ss_pred             ceeeehhhCCCEEEecC------CHHHHHHHHHhcccCceEEEEeCCCHHHHHHHHHhcCC-------CCHHHHHHHHHH
Confidence            55677889999999998      45555555 4444333 344456678999999999976       345566666654


Q ss_pred             hhcCCCc--cCCccEEEEeCC
Q 006654          147 KKELPKL--SEGFSRITLCQN  165 (636)
Q Consensus       147 ~fe~P~~--~Egfd~Viii~~  165 (636)
                      ...+...  ...|+.+++-++
T Consensus       150 a~~e~~~~~~~~fD~vIvNdd  170 (186)
T 1ex7_A          150 AQAELAYAETGAHDKVIVNDD  170 (186)
T ss_dssp             HHHHHHHHTTTCSSEEEECSS
T ss_pred             HHHHHhhccccCCcEEEECcC
Confidence            3222111  224787755443

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=98.62  E-value=1.5e-07  Score=89.43  Aligned_cols=102  Identities=20%  Similarity=0.214  Sum_probs=62.3

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhh------cCCCCCc---------H--HHHH----HHHHHHH-
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTI------NKGKSGT---------K--VQCL----TSASSAL-   75 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~i------r~~~~~~---------~--~~~~----~~~~~~L-   75 (636)
                      .+|+|.|+|||||||+|+.|++.++   ..+.+++.|.+      +......         .  ....    ..+...+ 
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~   81 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKGIAEEAR   81 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccchhhhhcCCHHHHHHHHHHHHHHHHHHhh
Confidence            4799999999999999999999875   23667775443      2221111         1  1111    2234455 


Q ss_pred             -hCCCeEEEeCCCCCHHH--------HHHHHHhCCCCCeEEEEEEeCCHHHHHHH-HHh--cc
Q 006654           76 -KKGKSVFLDRCNLEREQ--------RTDFVKLGGPEVDVHAVVLDLPAKLCISR-SVK--RI  126 (636)
Q Consensus        76 -~~G~~VIID~tn~~~~~--------R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R-~~~--R~  126 (636)
                       ..|..||+|++.....+        +..+..+. .   ..+|+|++|.+++.+| +..  |.
T Consensus        82 ~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~-~---~~vi~l~~~~~~~~~rr~~~~~R~  140 (194)
T 1nks_A           82 AGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEIN-P---SVIFLLEADPKIILSRQKRDTTRN  140 (194)
T ss_dssp             HTCSSEEEEEECSEEEETTEEEESSCHHHHHHHC-C---SEEEEEECCHHHHHHHHHHCTTTC
T ss_pred             ccCCCEEEECCchhhccccccccCCCHHHHHhcC-C---CEEEEEeCCHHHHHHHHHhhcccC
Confidence             67889999985211111        22222221 1   2478999999998866 666  64

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=98.62  E-value=1.5e-07  Score=90.99  Aligned_cols=107  Identities=19%  Similarity=0.095  Sum_probs=65.2

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCC--eEEeeh---hhhc----CCC----CCcH-HHHH----------HHHHHHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARP--WARICQ---DTIN----KGK----SGTK-VQCL----------TSASSAL   75 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~--~~~Is~---D~ir----~~~----~~~~-~~~~----------~~~~~~L   75 (636)
                      +.+|+|.|+|||||||+|+.|++.++..  +.....   +.++    .+.    .... ..++          ..+...+
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~i~~~l   83 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWNSSDWIHDIIKEAKKKDLLTPLTFSLIHATDFSDRYERYILPML   83 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETTCCCHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCCcHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999988742  322211   1111    111    1111 1111          1223456


Q ss_pred             hCCCeEEEeCCCCCHHHH--------HHHHHh-CCCCCeEEEEEEeCCHHHHHHHHH-hcc
Q 006654           76 KKGKSVFLDRCNLEREQR--------TDFVKL-GGPEVDVHAVVLDLPAKLCISRSV-KRI  126 (636)
Q Consensus        76 ~~G~~VIID~tn~~~~~R--------~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~-~R~  126 (636)
                      ..|..||+|+++++...+        ..+..+ ......-.+|+|++|.+++.+|+. .|.
T Consensus        84 ~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~  144 (213)
T 2plr_A           84 KSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKR  144 (213)
T ss_dssp             HTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTC
T ss_pred             hCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcccc
Confidence            788999999965543211        122233 222222257899999999999999 776

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.61  E-value=8e-08  Score=94.19  Aligned_cols=133  Identities=17%  Similarity=0.214  Sum_probs=69.4

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCe---------------------EEeehhhhcC----CCCCcH--------
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPW---------------------ARICQDTINK----GKSGTK--------   64 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~---------------------~~Is~D~ir~----~~~~~~--------   64 (636)
                      .++.+|+|+||+||||||+++.|+..++..+                     ..++.+.+..    +.+..+        
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~y   85 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYY   85 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccC
Confidence            3567899999999999999999998875211                     1111111110    000000        


Q ss_pred             HHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEe-CCHHHHHHHHHhcccccCCCCCCChHHHHH
Q 006654           65 VQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLD-LPAKLCISRSVKRIEHEGNLQGGKAAAVVN  142 (636)
Q Consensus        65 ~~~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld-~p~e~l~~R~~~R~~~~~~~~~~vp~evi~  142 (636)
                      ......+.+.+..|+.+|+|.      .+.....+ ......+ +|++. ++.+++.+|+..|..       ...+++.+
T Consensus        86 g~~~~~i~~~l~~g~~vild~------~~~g~~~~~~~~~~~~-~i~i~~ps~~~l~~Rl~~R~~-------~~~e~i~~  151 (208)
T 3tau_A           86 GTPLEYVEEKLAAGVDIFLEI------EVQGAMQVRKAMPEGI-FIFLTPPDLSELKNRIIGRGT-------ESMEVVEE  151 (208)
T ss_dssp             EEEHHHHHHHHHTTCCEEEEC------CHHHHHHHHHHCTTSE-EEEEECTTTTTSSCC--------------CCHHHHH
T ss_pred             CCcHHHHHHHHHcCCeEEEEe------eHHHHHHHHHhCCCeE-EEEEeCCCHHHHHHHHHhcCC-------CCHHHHHH
Confidence            000134677889999999998      22223233 2222223 44555 448899999998865       23455555


Q ss_pred             HHHhhhcCCCccCCccEEEEeC
Q 006654          143 RMLQKKELPKLSEGFSRITLCQ  164 (636)
Q Consensus       143 rm~~~fe~P~~~Egfd~Viii~  164 (636)
                      ++.....+-.....|+.+++-+
T Consensus       152 Rl~~~~~e~~~~~~~d~vivN~  173 (208)
T 3tau_A          152 RMETAKKEIEMMASYDYAVVND  173 (208)
T ss_dssp             HHHHHHHHHHHGGGSSEEEECS
T ss_pred             HHHHHHHHHHhhccCCEEEECc
Confidence            5554432212234567665543

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=98.58  E-value=1.4e-07  Score=106.25  Aligned_cols=104  Identities=22%  Similarity=0.241  Sum_probs=78.9

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhcCCCC-----CcHH------HHHHHHHHHHhCCCeEEE
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKS-----GTKV------QCLTSASSALKKGKSVFL   83 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir~~~~-----~~~~------~~~~~~~~~L~~G~~VII   83 (636)
                      ..+.+|+|+|+|||||||+|+.|++.++   ..+.+++.|.++....     ...+      .+...+...+..|..||+
T Consensus       370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~~~~f~~~er~~~l~~i~~~~~~~l~~G~~VI~  449 (546)
T 2gks_A          370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLGFSKEDRITNILRVGFVASEIVKHNGVVIC  449 (546)
T ss_dssp             GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhcccccccHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence            4568899999999999999999998764   4567889998864211     1111      122345566788999999


Q ss_pred             eCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHH
Q 006654           84 DRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSV  123 (636)
Q Consensus        84 D~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~  123 (636)
                      |.++..+..|..+.++ .+.  .+.+|+|++|.++|.+|+.
T Consensus       450 d~~~~~~~~r~~~~~~l~~~--d~~vV~L~~~~e~~~~Rl~  488 (546)
T 2gks_A          450 ALVSPYRSARNQVRNMMEEG--KFIEVFVDAPVEVCEERDV  488 (546)
T ss_dssp             ECCCCCHHHHHHHHTTSCTT--CEEEEEEECCGGGHHHHCC
T ss_pred             EcCCCCHHHHHHHHHHhhcC--CEEEEEEeCCHHHHHHHhh
Confidence            9988888888888777 542  3678899999999999975

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=98.57  E-value=3.3e-07  Score=94.38  Aligned_cols=112  Identities=20%  Similarity=0.240  Sum_probs=69.5

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc-----CCC-----------------CC--cHHH-------
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-----KGK-----------------SG--TKVQ-------   66 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir-----~~~-----------------~~--~~~~-------   66 (636)
                      +.|.+|+|+|+|||||||+|+.|+ .++  +.+|+.|.+.     .+.                 .+  .+..       
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La-~lg--~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~  149 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLK-NLG--AYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFG  149 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHH-HHT--CEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH-HCC--CcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhC
Confidence            457899999999999999999999 567  6778887761     000                 00  0000       


Q ss_pred             -------------------HHHHHHHHHhCC-CeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 006654           67 -------------------CLTSASSALKKG-KSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRI  126 (636)
Q Consensus        67 -------------------~~~~~~~~L~~G-~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~  126 (636)
                                         ....+.+....+ ..||+|+..+....   |...  .+   .+|++++|.+++.+|+..|.
T Consensus       150 ~~~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~~---~~~~--~d---~vI~l~a~~ev~~~Rl~~R~  221 (281)
T 2f6r_A          150 NKKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEAG---WQSM--VH---EVWTVVIPETEAVRRIVERD  221 (281)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTTT---GGGG--CS---EEEEEECCHHHHHHHHHHHH
T ss_pred             CHHHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhccc---hHHh--CC---EEEEEcCCHHHHHHHHHHcC
Confidence                               001111222333 57999996544321   2111  12   37899999999999999985


Q ss_pred             cccCCCCCCChHHHHHHHHhh
Q 006654          127 EHEGNLQGGKAAAVVNRMLQK  147 (636)
Q Consensus       127 ~~~~~~~~~vp~evi~rm~~~  147 (636)
                      .       ...+++..++..+
T Consensus       222 g-------~s~e~~~~ri~~q  235 (281)
T 2f6r_A          222 G-------LSEAAAQSRLQSQ  235 (281)
T ss_dssp             C-------CCHHHHHHHHHTS
T ss_pred             C-------CCHHHHHHHHHHc
Confidence            3       1345555666555

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.55  E-value=5e-07  Score=90.49  Aligned_cols=105  Identities=20%  Similarity=0.304  Sum_probs=68.0

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-cCC------------------CCCcHHHHHHHHHHHHh--C
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NKG------------------KSGTKVQCLTSASSALK--K   77 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r~~------------------~~~~~~~~~~~~~~~L~--~   77 (636)
                      +|.+|+|+|+|||||||+++.|++.++  +..++.+.+ +.+                  .......+...+...+.  .
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg--~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~  103 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFG--LQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRR  103 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHC--CCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhC--CeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence            478999999999999999999999988  444555433 111                  11112222233333343  4


Q ss_pred             CCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654           78 GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (636)
Q Consensus        78 G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~  128 (636)
                      +..+|+|+.+....+...+..+...+   .+++|++|.+++.+|+..|...
T Consensus       104 ~~~~il~g~~~~~~~~~~l~~~~~~~---~vi~L~~~~~~~l~r~~~r~~~  151 (246)
T 2bbw_A          104 GQHWLLDGFPRTLGQAEALDKICEVD---LVISLNIPFETLKDRLSRRWIH  151 (246)
T ss_dssp             TSCEEEESCCCSHHHHHHHHTTCCCC---EEEEEECCHHHHHHHHHTEEEE
T ss_pred             CCeEEEECCCCCHHHHHHHHhhcCCC---EEEEEECCHHHHHHHHHcCCCc
Confidence            56788999766654333333222233   4789999999999999888643

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=98.54  E-value=1.1e-07  Score=92.08  Aligned_cols=33  Identities=21%  Similarity=0.198  Sum_probs=28.5

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i   56 (636)
                      .+|.|+|+|||||||+++.|++ ++  +.+++.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~-~g--~~~i~~d~~   34 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE-LG--AYVLDADKL   34 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH-TT--CEEEEHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH-CC--CEEEEccHH
Confidence            3689999999999999999999 77  667887665

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.53  E-value=5.7e-08  Score=94.38  Aligned_cols=34  Identities=24%  Similarity=0.315  Sum_probs=29.2

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i   56 (636)
                      +.+|.|+|+|||||||+++.|+. +|  +.+++.|.+
T Consensus         2 ~~~i~l~G~~GsGKST~~~~La~-lg--~~~id~d~~   35 (206)
T 1jjv_A            2 TYIVGLTGGIGSGKTTIANLFTD-LG--VPLVDADVV   35 (206)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHT-TT--CCEEEHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH-CC--CcccchHHH
Confidence            46799999999999999999987 77  667888776

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=98.51  E-value=1.5e-07  Score=88.38  Aligned_cols=94  Identities=19%  Similarity=0.199  Sum_probs=57.1

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC-----------c--HHHHHHHHHHHHhCCCeE-EEeC
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-----------T--KVQCLTSASSALKKGKSV-FLDR   85 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~-----------~--~~~~~~~~~~~L~~G~~V-IID~   85 (636)
                      ...|+|.|+|||||||+|+.|++.++  +.+++.|.+.....+           .  .......+...+.....+ |++.
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~lg--~~~id~D~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~Vi~~   84 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLALK--LEVLDTDMIISERVGLSVREIFEELGEDNFRMFEKNLIDELKTLKTPHVIST   84 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHHT--CCEEEHHHHHHHHHTSCHHHHHHHTCHHHHHHHHHHHHHHHHTCSSCCEEEC
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhC--CCEEEChHHHHHHhCCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCCEEEEC
Confidence            35689999999999999999999998  556888776432111           1  001112222333333334 5543


Q ss_pred             ---CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhc
Q 006654           86 ---CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKR  125 (636)
Q Consensus        86 ---tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R  125 (636)
                         ..+. ..      +...   -.+|+|++|.+++.+|+..|
T Consensus        85 g~g~~~~-~~------l~~~---~~vi~l~~~~e~~~~Rl~~r  117 (168)
T 1zuh_A           85 GGGIVMH-EN------LKGL---GTTFYLKMDFETLIKRLNQK  117 (168)
T ss_dssp             CGGGGGC-GG------GTTS---EEEEEEECCHHHHHHHHCC-
T ss_pred             CCCEech-hH------HhcC---CEEEEEECCHHHHHHHHhcc
Confidence               1111 11      3222   24889999999999999988

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=98.51  E-value=7.7e-08  Score=92.57  Aligned_cols=37  Identities=24%  Similarity=0.323  Sum_probs=31.4

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i   56 (636)
                      ..++.+|.|+|+|||||||+|+.|++. +  +.+++.|.+
T Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g--~~~id~d~~   41 (203)
T 1uf9_A            5 AKHPIIIGITGNIGSGKSTVAALLRSW-G--YPVLDLDAL   41 (203)
T ss_dssp             -CCCEEEEEEECTTSCHHHHHHHHHHT-T--CCEEEHHHH
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHC-C--CEEEcccHH
Confidence            346789999999999999999999997 6  667888765

>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63}

Probab=98.51  E-value=8.2e-09  Score=99.47  Aligned_cols=108  Identities=12%  Similarity=0.072  Sum_probs=76.8

Q ss_pred             CccCCCCCchhhHHHHHHHHhhc---CCCCCCCCCCcccCCCCCCcccccccccccCcceecccccccchhhcccCChhh
Q 006654          188 GSFGQKNPDAKIQLGIMKFLKKV---DAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEV  264 (636)
Q Consensus       188 gc~~~~~~~~~v~~~i~k~l~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  264 (636)
                      |+.+. +++.++|.+|.+-.++.   ....++|. ++ +       |...++   .+-|.+-+.|+.  + ..+.|..||
T Consensus        50 gGv~~-AI~~aaG~~l~~ec~~~~~~~g~~~~G~-a~-i-------T~~~~l---~VIH~vgP~~~~--~-~~~~L~~~y  113 (174)
T 2vri_A           50 GGVAR-AIDILTEGQLQSLSKDYISSNGPLKVGA-GV-M-------LECEKF---NVFNVVGPRTGK--H-EHSLLVEAY  113 (174)
T ss_dssp             SHHHH-HHHHHTTTHHHHHHHHHHHHHCSCCTTC-EE-E-------EECSSC---EEEEEECCCSST--T-HHHHHHHHH
T ss_pred             CcHhH-HHHHHhhHHHHHHHHHHHHhcCCCCCCe-EE-E-------EECCCC---EEEEEcCCCCCc--c-hHHHHHHHH
Confidence            45656 78999988888766652   12445564 11 1       122222   666766677653  3 567889999


Q ss_pred             hhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCCeEEEEecc
Q 006654          265 ASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDL  321 (636)
Q Consensus       265 ~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~~~~~v~~~~  321 (636)
                      .+||...     .|||||+||||+||||.++|++++++++.+     ..++++.++.
T Consensus       114 ~~~L~~~-----~SIAfP~IstG~~g~p~~~aa~i~~~~v~~-----~~V~~v~f~~  160 (174)
T 2vri_A          114 NSILFEN-----GIPLMPLLSCGIFGVRIENSLKALFSCDIN-----KPLQVFVYSS  160 (174)
T ss_dssp             HHHHHSS-----SCEEEECSSCGGGCCCHHHHHHHHHTSCCC-----SCEEEEECSH
T ss_pred             HHHHhhC-----CcEEeCccccCCCCCCHHHHHHHHHHHHhh-----CcEEEEEcCH
Confidence            9999862     399999999999999999999999999986     3566766543

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.51  E-value=3.6e-07  Score=88.88  Aligned_cols=101  Identities=17%  Similarity=0.199  Sum_probs=65.7

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHc-CCCeEEeehhhhcCCC---------CC--------cHHHHHHHHHHHHh--
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS-ARPWARICQDTINKGK---------SG--------TKVQCLTSASSALK--   76 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~-~~~~~~Is~D~ir~~~---------~~--------~~~~~~~~~~~~L~--   76 (636)
                      -.++.+|.++|+|||||||+++.|++.+ +  +.++++|.+....         ..        ....+...+...+.  
T Consensus        18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~--~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~   95 (207)
T 2qt1_A           18 GSKTFIIGISGVTNSGKTTLAKNLQKHLPN--CSVISQDDFFKPESEIETDKNGFLQYDVLEALNMEKMMSAISCWMESA   95 (207)
T ss_dssp             SCCCEEEEEEESTTSSHHHHHHHHHTTSTT--EEEEEGGGGBCCGGGSCBCTTSCBCCSSGGGBCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHhcCC--cEEEeCCccccCHhHhhccccCCChhHHHHHhHHHHHHHHHHHHHhCC
Confidence            3456789999999999999999999877 5  7788888764210         01        11223333333332  


Q ss_pred             -------------CCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 006654           77 -------------KGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRI  126 (636)
Q Consensus        77 -------------~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~  126 (636)
                                   ....||+|+..... .+ .+.  ...+   .++++++|.+++.+|+..|.
T Consensus        96 ~~~~~~~~~~~~~~~~~vi~eg~~~~~-~~-~~~--~~~d---~~i~l~~~~~~~~~R~~~R~  151 (207)
T 2qt1_A           96 RHSVVSTDQESAEEIPILIIEGFLLFN-YK-PLD--TIWN---RSYFLTIPYEECKRRRSTRV  151 (207)
T ss_dssp             TTSSCCC-----CCCCEEEEECTTCTT-CG-GGT--TTCS---EEEEEECCHHHHHHHHHHSC
T ss_pred             CCCCcCCCeeecCCCCEEEEeehHHcC-cH-HHH--HhcC---eeEEEECCHHHHHHHHHHcC
Confidence                         24578999954332 11 111  2222   37899999999999998885

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.47  E-value=2.9e-07  Score=93.48  Aligned_cols=97  Identities=19%  Similarity=0.123  Sum_probs=63.7

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCC-C-c------------HHHHHH-HHHHHHhC-CCeEEE
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS-G-T------------KVQCLT-SASSALKK-GKSVFL   83 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~-~-~------------~~~~~~-~~~~~L~~-G~~VII   83 (636)
                      ...|+|+|+|||||||+++.|++.++  +.+++.|.+..... + .            ...... .+.+.+.. ...||.
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg--~~~~d~d~~~~~~~~g~~i~~i~~~~ge~~fr~~e~~~l~~l~~~~~~~Via  125 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLG--YTFFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQVVVS  125 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHT--CEEEEHHHHHHHHSTTSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCSSEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcC--CcEEeCcHHHHHHhcCccHHHHHHHhCcHHHHHHHHHHHHHHHhhcCCcEEe
Confidence            45799999999999999999999998  67789887753221 1 1            011112 22333333 345555


Q ss_pred             eC--CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhc
Q 006654           84 DR--CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKR  125 (636)
Q Consensus        84 D~--tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R  125 (636)
                      ++  +......+..+   . .+   .+|||++|.+++.+|+..|
T Consensus       126 ~GgG~v~~~~~~~~l---~-~~---~vV~L~a~~e~l~~Rl~~~  162 (250)
T 3nwj_A          126 TGGGAVIRPINWKYM---H-KG---ISIWLDVPLEALAHRIAAV  162 (250)
T ss_dssp             CCGGGGGSHHHHHHH---T-TS---EEEEEECCHHHHHHHHHC-
T ss_pred             cCCCeecCHHHHHHH---h-CC---cEEEEECCHHHHHHHHhhc
Confidence            44  45555555444   3 23   3889999999999999864

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.46  E-value=1.7e-06  Score=82.53  Aligned_cols=124  Identities=23%  Similarity=0.215  Sum_probs=76.8

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC--------CCCc----HHHHH----HHHHHHHhCCCeE
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG--------KSGT----KVQCL----TSASSALKKGKSV   81 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~--------~~~~----~~~~~----~~~~~~L~~G~~V   81 (636)
                      .+..+++|+|+|||||||+++.|+...+.+.++++.|.+...        ....    ...+.    ..+......|..+
T Consensus         7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~   86 (191)
T 1zp6_A            7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAKEGYFV   86 (191)
T ss_dssp             CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHHHHHHTSCEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhhhcccccCCccchhhhhHHHHHHHHHHHHHHhccCCeE
Confidence            346789999999999999999999876555678888776321        1111    11111    1122234556778


Q ss_pred             EEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcC
Q 006654           82 FLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKEL  150 (636)
Q Consensus        82 IID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~  150 (636)
                      ++|... ....+..+..+   +..+..+++..+.++++.|+..|....     ....+.++.+.+.+..
T Consensus        87 ~~~~~~-~~~~l~~~~~~---~~~~~~ls~~~~~~v~~~R~~~r~~~~-----lld~~~~~~~~~~~~~  146 (191)
T 1zp6_A           87 ILDGVV-RPDWLPAFTAL---ARPLHYIVLRTTAAEAIERCLDRGGDS-----LSDPLVVADLHSQFAD  146 (191)
T ss_dssp             EECSCC-CTTTTHHHHTT---CSCEEEEEEECCHHHHHHHHHTTCTTS-----CCCHHHHHHHHHHTTC
T ss_pred             EEeccC-cHHHHHHHHhc---CCCeEEEEecCCHHHHHHHHHhcCCCc-----cCCHHHHHHHHHHHhc
Confidence            889843 33333333222   234567899999999999999985321     1234555666665544

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=98.45  E-value=1.6e-06  Score=85.85  Aligned_cols=109  Identities=19%  Similarity=0.245  Sum_probs=66.0

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeeh-----------hhhcCCC---CCcHH-----------HHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQ-----------DTINKGK---SGTKV-----------QCLTS   70 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~-----------D~ir~~~---~~~~~-----------~~~~~   70 (636)
                      +..+|++.|++||||||+++.|++.+.   ..+..+..           +.+.++.   .....           .+...
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~~~~~~   84 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAGV   84 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            357899999999999999999998764   22222210           1122221   11111           11234


Q ss_pred             HHHHHhCCCeEEEeCCC------------CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           71 ASSALKKGKSVFLDRCN------------LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        71 ~~~~L~~G~~VIID~tn------------~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      +..+|.+|..||+|...            +..++-..+... .....+-.+|+|++|.+++.+|+..|..
T Consensus        85 i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~  154 (213)
T 4edh_A           85 IRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGR  154 (213)
T ss_dssp             HHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSS
T ss_pred             HHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence            56678899999999832            112222222222 1222233689999999999999999853

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=98.44  E-value=9.9e-07  Score=84.93  Aligned_cols=102  Identities=19%  Similarity=0.208  Sum_probs=58.1

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc-CCCeEEeehh------------hhcCC-CCCcH-HHH---------HHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS-ARPWARICQD------------TINKG-KSGTK-VQC---------LTSASSA   74 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~-~~~~~~Is~D------------~ir~~-~~~~~-~~~---------~~~~~~~   74 (636)
                      ++.+|+|.|+|||||||+++.|++.+ +.++..++..            .+..+ ..... ..+         ...+...
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~l~~~~r~~~~~~i~~~   82 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQRSTVTGKMIDDYLTRKKTYNDHIVNLLFCANRWEFASFIQEQ   82 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSCTTSHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999999987 3333322210            01111 11111 111         1223456


Q ss_pred             HhCCCeEEEeCCCCCHHH--------HHHHHHh-CCCCCeEEEEEEeCCHHHHHH
Q 006654           75 LKKGKSVFLDRCNLEREQ--------RTDFVKL-GGPEVDVHAVVLDLPAKLCIS  120 (636)
Q Consensus        75 L~~G~~VIID~tn~~~~~--------R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~  120 (636)
                      +..|..||+|++.++...        +..+..+ ......-.+|+|++|.+++.+
T Consensus        83 l~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~  137 (204)
T 2v54_A           83 LEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINR  137 (204)
T ss_dssp             HHTTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTT
T ss_pred             HHCCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHh
Confidence            678889999985443211        1112222 221112247899999998877

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=98.43  E-value=2.2e-07  Score=88.28  Aligned_cols=104  Identities=16%  Similarity=0.264  Sum_probs=60.6

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCC---CeEEeehhhh-c-----CCCC-------C-cH---HHHHHHH---HHHHh
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSAR---PWARICQDTI-N-----KGKS-------G-TK---VQCLTSA---SSALK   76 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~---~~~~Is~D~i-r-----~~~~-------~-~~---~~~~~~~---~~~L~   76 (636)
                      +.+|+|.|+|||||||+++.|++.++.   .+.+++.|.+ +     .+..       . ..   ..+...+   ...+.
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   82 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPETQKRIQKMAGRKIAEMA   82 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGGGGSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCCCCHHHHhcCCHHHHHHHHHHHHHHHHhhc
Confidence            468999999999999999999998762   1556776543 1     1110       0 01   1111112   22234


Q ss_pred             CCCeEEEeCCCCCHHHH--------HHHHHhCCCCCeEEEEEEeCCHHHHHH-HHHh--ccc
Q 006654           77 KGKSVFLDRCNLEREQR--------TDFVKLGGPEVDVHAVVLDLPAKLCIS-RSVK--RIE  127 (636)
Q Consensus        77 ~G~~VIID~tn~~~~~R--------~~l~~l~~~g~~v~vV~Ld~p~e~l~~-R~~~--R~~  127 (636)
                      .+..||+|+........        ..+..+ ..  .+ +|+|++|.+++.+ |+..  |..
T Consensus        83 ~~~~viid~~~~~~~~~~~~~~~~~~~~~~~-~~--~~-~i~l~~~~~~~~~rRl~~~~R~r  140 (192)
T 1kht_A           83 KESPVAVDTHSTVSTPKGYLPGLPSWVLNEL-NP--DL-IIVVETTGDEILMRRMSDETRVR  140 (192)
T ss_dssp             TTSCEEEECCSEEEETTEEEESSCHHHHHHH-CC--SE-EEEEECCHHHHHHHHHTSSSCSS
T ss_pred             cCCeEEEccceeccccccccccCcHHHHhcc-CC--CE-EEEEeCCHHHHHHHHhhhcccCC
Confidence            56689999854211110        111111 12  22 8899999999996 8877  543

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=98.42  E-value=6.3e-07  Score=85.95  Aligned_cols=102  Identities=20%  Similarity=0.191  Sum_probs=56.3

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh--------hhhcCCCCC-cH-HH------HHHHHHHHHhCCCeEEEeC
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQ--------DTINKGKSG-TK-VQ------CLTSASSALKKGKSVFLDR   85 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~--------D~ir~~~~~-~~-~~------~~~~~~~~L~~G~~VIID~   85 (636)
                      +|+|.|+|||||||+++.|++.++.  .++..        +.+...... .. .+      ....+...+..|. +|+|.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-vi~d~   78 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLGY--EIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLEN-IIFDR   78 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHCC--EEECCCGGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------C-EEEES
T ss_pred             EEEEECCCccCHHHHHHHHHHhcCC--cEEcccccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCC-EEEEe
Confidence            6899999999999999999999883  33331        111101000 00 00      0122223445554 99999


Q ss_pred             CCCCHH---------------HHHHHH---H-h-CCC-------CCeEEEEEEeCCHHHHHHHHHhcc
Q 006654           86 CNLERE---------------QRTDFV---K-L-GGP-------EVDVHAVVLDLPAKLCISRSVKRI  126 (636)
Q Consensus        86 tn~~~~---------------~R~~l~---~-l-~~~-------g~~v~vV~Ld~p~e~l~~R~~~R~  126 (636)
                      +.+...               .+..+.   . . ...       ...-.+|+|++|.+++.+|+..|.
T Consensus        79 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R~  146 (205)
T 2jaq_A           79 TLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKRG  146 (205)
T ss_dssp             CTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHHT
T ss_pred             ccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHcC
Confidence            766421               111111   1 2 211       122268999999999999998874

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=98.39  E-value=1.7e-06  Score=83.41  Aligned_cols=34  Identities=21%  Similarity=0.306  Sum_probs=30.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir   57 (636)
                      +|.|.|+|||||||+|+.|++.++  +.+++.|.+.
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg--~~~~d~d~~~   37 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALG--VPYLSSGLLY   37 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT--CCEEEHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcC--CceeccchHH
Confidence            799999999999999999999998  6668887764

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=98.39  E-value=2.8e-06  Score=83.59  Aligned_cols=110  Identities=20%  Similarity=0.234  Sum_probs=63.2

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCC--eEEeeh-------hhhc----CCC-CCcH-----------HHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARP--WARICQ-------DTIN----KGK-SGTK-----------VQCLTSASS   73 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~--~~~Is~-------D~ir----~~~-~~~~-----------~~~~~~~~~   73 (636)
                      |...|++-|+.||||||+++.|++.+...  +.....       ..++    ++. ....           +.+...+..
T Consensus         1 M~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~eP~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~~~i~p   80 (205)
T 4hlc_A            1 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIP   80 (205)
T ss_dssp             -CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEESSTTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            44689999999999999999999887432  222210       1121    221 1111           112244567


Q ss_pred             HHhCCCeEEEeCCCC------------CHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654           74 ALKKGKSVFLDRCNL------------EREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (636)
Q Consensus        74 ~L~~G~~VIID~tn~------------~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~  128 (636)
                      +|.+|..||.|....            ....-..+... ...-.+=.+++|++|.+++.+|+.+|...
T Consensus        81 ~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~  148 (205)
T 4hlc_A           81 ALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRD  148 (205)
T ss_dssp             HHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC----
T ss_pred             HHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCCc
Confidence            889999999997321            11222222222 11111225889999999999999988653

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.38  E-value=1.7e-06  Score=84.85  Aligned_cols=36  Identities=22%  Similarity=0.529  Sum_probs=31.1

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir   57 (636)
                      +.+|.|+|+|||||||+++.|++.++  +.+++.|.+.
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g--~~~~d~g~i~   40 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQ--WHLLDSGAIY   40 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHT--CEEEEHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC--CCcccCccee
Confidence            45799999999999999999999988  6778876653

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.34  E-value=2.6e-06  Score=82.04  Aligned_cols=103  Identities=17%  Similarity=0.212  Sum_probs=47.1

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeE-EeehhhhcCCC------C----CcHH---H------------------
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWA-RICQDTINKGK------S----GTKV---Q------------------   66 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~-~Is~D~ir~~~------~----~~~~---~------------------   66 (636)
                      ++.+|+|+|+|||||||+++.|+..+..... .+. +..+...      .    ....   .                  
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSIS-MTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYY   83 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCC-EECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecc-cccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCeec
Confidence            4568999999999999999999987621111 111 1111000      0    0000   0                  


Q ss_pred             --HHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           67 --CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        67 --~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                        ....+...+..|..||+|.......   .+...  ....+.++...++.+++.+|+..|..
T Consensus        84 g~~~~~i~~~l~~g~~vv~d~~~~~~~---~~~~~--~~~~~~i~~~~~~~~~~~~Rl~~R~~  141 (207)
T 2j41_A           84 GTPVQYVKDTMDEGHDVFLEIEVEGAK---QVRKK--FPDALFIFLAPPSLEHLRERLVGRGT  141 (207)
T ss_dssp             EEEHHHHHHHHHTTCEEEEECCGGGHH---HHHHH--CTTSEEEEEECCC-------------
T ss_pred             CCCHHHHHHHHHcCCeEEEEECHHHHH---HHHHh--cCCeEEEEEECCCHHHHHHHHHhcCC
Confidence              0134566678899999998533222   22222  11122333334678899999998864

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=98.32  E-value=1.8e-06  Score=84.53  Aligned_cols=35  Identities=31%  Similarity=0.358  Sum_probs=30.4

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i   56 (636)
                      ++.+|+|+|++||||||+++.|++ ++  +.+++.|.+
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~-lg--~~~id~D~~   37 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD-LG--INVIDADII   37 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH-TT--CEEEEHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH-cC--CEEEEccHH
Confidence            467899999999999999999988 77  677888765

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=98.31  E-value=1.1e-06  Score=88.10  Aligned_cols=128  Identities=16%  Similarity=0.167  Sum_probs=69.0

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc-------CCCeEEeeh-----------hhhcCCCCCcHH-----------HHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS-------ARPWARICQ-----------DTINKGKSGTKV-----------QCLT   69 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~-------~~~~~~Is~-----------D~ir~~~~~~~~-----------~~~~   69 (636)
                      +..+|++.|++||||||+++.|++.+       +..+..+..           ..+.++......           .+..
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~llf~a~R~~~~~~  103 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILLNQPMDLETEALLMFAGRREHLAL  103 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            46799999999999999999999876       322222210           111112111111           1123


Q ss_pred             HHHHHHhCCCeEEEeCCCCC------------HHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCC
Q 006654           70 SASSALKKGKSVFLDRCNLE------------REQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGK  136 (636)
Q Consensus        70 ~~~~~L~~G~~VIID~tn~~------------~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~v  136 (636)
                      .+..+|.+|..||+|....+            .++-..+... .....+-.+|+|++|.+++.+|+..|....  +-...
T Consensus       104 ~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~~d--r~E~~  181 (227)
T 3v9p_A          104 VIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRMPD--KFESE  181 (227)
T ss_dssp             THHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCCCC-----CCH
T ss_pred             HHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccCcc--chhhh
Confidence            45677889999999973222            2222222222 111223368899999999999999885211  10111


Q ss_pred             hHHHHHHHHhhh
Q 006654          137 AAAVVNRMLQKK  148 (636)
Q Consensus       137 p~evi~rm~~~f  148 (636)
                      ..+..++..+.|
T Consensus       182 ~~ef~~rv~~~Y  193 (227)
T 3v9p_A          182 SDAFFARTRAEY  193 (227)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHH
Confidence            345555555544

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=98.27  E-value=2.6e-06  Score=85.81  Aligned_cols=109  Identities=20%  Similarity=0.215  Sum_probs=60.5

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC---CC-eEEeeh-----------hhhcCC----CCCcHH-----------HHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA---RP-WARICQ-----------DTINKG----KSGTKV-----------QCL   68 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~-~~~Is~-----------D~ir~~----~~~~~~-----------~~~   68 (636)
                      ++.+|++.|++||||||+++.|++.+.   .. ...+..           ..+..+    ......           .+.
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~~~~  105 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQLVE  105 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHHHH
Confidence            357999999999999999999988764   22 212210           112111    111111           112


Q ss_pred             HHHHHHHhCCCeEEEeCCC------------CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           69 TSASSALKKGKSVFLDRCN------------LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        69 ~~~~~~L~~G~~VIID~tn------------~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      ..+..+|.+|..||+|...            +.......+... ...-.+-.+|+|++|.+++.+|+.+|..
T Consensus       106 ~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~  177 (236)
T 3lv8_A          106 NVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGE  177 (236)
T ss_dssp             HTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----C
T ss_pred             HHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence            3456688999999999732            222222222222 1111122588999999999999999863

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=98.26  E-value=4.9e-06  Score=82.39  Aligned_cols=111  Identities=16%  Similarity=0.137  Sum_probs=72.8

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC-----CC---------C--------C--cH-----------
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-----GK---------S--------G--TK-----------   64 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~-----~~---------~--------~--~~-----------   64 (636)
                      ..-|.|+|.+||||||+++.|++ +|  +.++|.|.+..     +.         +        +  .+           
T Consensus         9 ~~~iglTGgigsGKStv~~~l~~-~g--~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~   85 (210)
T 4i1u_A            9 MYAIGLTGGIGSGKTTVADLFAA-RG--ASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDE   85 (210)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH-TT--CEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHH-CC--CcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCH
Confidence            45689999999999999999987 77  77799887631     00         0        1  00           


Q ss_pred             -----------HHHHHHHHHHHhC-C-CeEEEeCCCCCH-HHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 006654           65 -----------VQCLTSASSALKK-G-KSVFLDRCNLER-EQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEG  130 (636)
Q Consensus        65 -----------~~~~~~~~~~L~~-G-~~VIID~tn~~~-~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~  130 (636)
                                 ..+.+.+.+.+.. + ..+|+|..-+.+ .....+.+.        ++++++|.++..+|+.+|..   
T Consensus        86 ~~~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~pLL~E~~~~~~~~D~--------vi~V~ap~e~r~~Rl~~Rdg---  154 (210)
T 4i1u_A           86 DARRRLEAITHPLIRAETEREARDAQGPYVIFVVPLLVESRNWKARCDR--------VLVVDCPVDTQIARVMQRNG---  154 (210)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEECTTCTTCHHHHHHCSE--------EEEEECCHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEEecccccCCccccCCe--------EEEEECCHHHHHHHHHhcCC---
Confidence                       0111233333322 2 358899965555 443344222        88999999999999999974   


Q ss_pred             CCCCCChHHHHHHHHhhh
Q 006654          131 NLQGGKAAAVVNRMLQKK  148 (636)
Q Consensus       131 ~~~~~vp~evi~rm~~~f  148 (636)
                          ...+++..++..++
T Consensus       155 ----~s~eea~~ri~~Q~  168 (210)
T 4i1u_A          155 ----FTREQVEAIIARQA  168 (210)
T ss_dssp             ----CCHHHHHHHHHHSC
T ss_pred             ----CCHHHHHHHHHHcC
Confidence                34567777777654

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=98.25  E-value=8.6e-06  Score=80.65  Aligned_cols=108  Identities=19%  Similarity=0.150  Sum_probs=64.7

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcC---C-CeEEeeh-----------hhhcCC------CCCcH-----------HHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSA---R-PWARICQ-----------DTINKG------KSGTK-----------VQC   67 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~---~-~~~~Is~-----------D~ir~~------~~~~~-----------~~~   67 (636)
                      ..+|++.|++||||||+++.|++.+.   . .......           ..+...      .....           +.+
T Consensus         3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~~~~   82 (213)
T 4tmk_A            3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQLV   82 (213)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHHHHH
Confidence            46899999999999999999988763   2 1221211           112211      11111           111


Q ss_pred             HHHHHHHHhCCCeEEEeCCCCC------------HHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           68 LTSASSALKKGKSVFLDRCNLE------------REQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        68 ~~~~~~~L~~G~~VIID~tn~~------------~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      ...+..+|.+|..||.|....+            ..+-..+... .....+-.+|+|++|.+++.+|+.+|..
T Consensus        83 ~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~~  155 (213)
T 4tmk_A           83 ETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGE  155 (213)
T ss_dssp             HHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence            2456678899999999983221            1221112121 1111222688999999999999999854

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=98.23  E-value=8.5e-07  Score=86.46  Aligned_cols=36  Identities=28%  Similarity=0.434  Sum_probs=31.9

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i   56 (636)
                      .-.+|.|+|++||||||+|+.|++.+|  +.+++.|.+
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~lg--~~vid~D~~   46 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNKYG--AHVVNVDRI   46 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHC--CEEEEHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHhcC--CEEEECcHH
Confidence            457899999999999999999999888  677898877

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=98.21  E-value=1.9e-05  Score=77.03  Aligned_cols=35  Identities=20%  Similarity=0.295  Sum_probs=30.8

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i   56 (636)
                      |.+|+|+|+|||||||+++.|++.++  +.+++.|.+
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~g--~~~~~~d~~   37 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASELS--MIYVDTGAM   37 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT--CEEEEHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcC--CceecCChH
Confidence            56799999999999999999999988  667887765

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.21  E-value=1.7e-06  Score=84.03  Aligned_cols=102  Identities=15%  Similarity=0.206  Sum_probs=52.5

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCC-----CC--c----------HHHHHHHHHHHH-
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGK-----SG--T----------KVQCLTSASSAL-   75 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~-----~~--~----------~~~~~~~~~~~L-   75 (636)
                      ...+.+|.++|++||||||+++.|+..+   +..+..++.|.+....     .+  .          ...+.+.+...+ 
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~v~~~l~   98 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQLK   98 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHHHHHTSSCHHHHHHHTGGGTT
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccCCCccccCHHHHHHHHHHHHh
Confidence            4567899999999999999999998764   3345566777664321     11  0          111111111111 


Q ss_pred             ------------------------hCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 006654           76 ------------------------KKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRI  126 (636)
Q Consensus        76 ------------------------~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~  126 (636)
                                              ..+..||+|+..+.......   +  .+   .+|++++|.+++.+|+.+|.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vIveg~~l~~~~~~~---~--~d---~~i~v~~~~~~~~~R~~~R~  165 (201)
T 1rz3_A           99 ASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRKEWRP---F--FD---FVVYLDCPREIRFARENDQV  165 (201)
T ss_dssp             TCSEEEEEEEETTTTEEEEEEEECTTCSEEEEEETTTTSTTTGG---G--CS---EEEEECCC------------
T ss_pred             cCCccccCceeccCCCCCCceEEeCCCcEEEEechhhccHHHHh---h--cC---EEEEEeCCHHHHHHHHhcCC
Confidence                                    12456899996543222111   1  12   38899999999999999987

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.20  E-value=1.7e-05  Score=80.08  Aligned_cols=36  Identities=25%  Similarity=0.534  Sum_probs=31.3

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir   57 (636)
                      ..+|.|+|++||||||+++.|++.++  +..++.+.+.
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La~~Lg--~~~~d~g~i~   62 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALAESLN--WRLLDSGAIY   62 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHTT--CEEEEHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcC--CCcCCCCcee
Confidence            46899999999999999999999998  6677876664

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.19  E-value=3.3e-06  Score=95.07  Aligned_cols=105  Identities=18%  Similarity=0.175  Sum_probs=60.2

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcC----CCeEEeehhhhcCCC---C-CcH-H-----HHHHHH-HHHHhCCCeEE
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA----RPWARICQDTINKGK---S-GTK-V-----QCLTSA-SSALKKGKSVF   82 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~----~~~~~Is~D~ir~~~---~-~~~-~-----~~~~~~-~~~L~~G~~VI   82 (636)
                      .+..+|+|+|++||||||+++.|+..++    ..+..++.|.++...   . ... +     ..+..+ ......+..+|
T Consensus       367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l~~~~~ivi  446 (552)
T 3cr8_A          367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEITKNRGIAI  446 (552)
T ss_dssp             GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHhcCCEEE
Confidence            3567899999999999999999998874    224468888775311   1 111 1     111222 22234555566


Q ss_pred             EeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHH
Q 006654           83 LDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSV  123 (636)
Q Consensus        83 ID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~  123 (636)
                      ..........|....++ +..+ .+..|++++|.++|.+|..
T Consensus       447 ~~~~~~~~~~r~~~r~lL~~~g-~f~~V~L~~~~e~~~~R~~  487 (552)
T 3cr8_A          447 CAPIAPYRQTRRDVRAMIEAVG-GFVEIHVATPIETCESRDR  487 (552)
T ss_dssp             ECCCCCCHHHHHHHHHHHHTTS-EEEEEEECC----------
T ss_pred             EecCCccHHHHHHHHHHHHHcC-CEEEEEEcCCHHHHHHhcc
Confidence            55543345666677677 6666 6778999999999999964

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.18  E-value=3.1e-05  Score=76.87  Aligned_cols=134  Identities=14%  Similarity=0.141  Sum_probs=82.3

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCC-Ce---EEeehhhhcCCC-------CCcHH---H-----------------
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR-PW---ARICQDTINKGK-------SGTKV---Q-----------------   66 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~-~~---~~Is~D~ir~~~-------~~~~~---~-----------------   66 (636)
                      .+..+++|+||+||||||+.+.|...... .+   +.+..-..+.+.       +.+..   .                 
T Consensus        14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~   93 (219)
T 1s96_A           14 AQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNY   93 (219)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhcc
Confidence            34568999999999999999999987641 11   111110000000       00000   0                 


Q ss_pred             ---HHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHH
Q 006654           67 ---CLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVN  142 (636)
Q Consensus        67 ---~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~  142 (636)
                         -...+.+.|..|+.+|+|   +....+..+.++ . .  ...+++...+.+++.+|+..|+.       +.++++.+
T Consensus        94 yg~~~~~v~~~l~~G~illLD---LD~~~~~~i~~~l~-~--~~tI~i~th~~~~l~~Rl~~rG~-------~~~e~i~~  160 (219)
T 1s96_A           94 YGTSREAIEQVLATGVDVFLD---IDWQGAQQIRQKMP-H--ARSIFILPPSKIELDRRLRGRGQ-------DSEEVIAK  160 (219)
T ss_dssp             EEEEHHHHHHHHTTTCEEEEE---CCHHHHHHHHHHCT-T--CEEEEEECSSHHHHHHHHHTTSC-------SCHHHHHH
T ss_pred             CCCCHHHHHHHHhcCCeEEEE---ECHHHHHHHHHHcc-C--CEEEEEECCCHHHHHHHHHHcCC-------CCHHHHHH
Confidence               013567788899999999   788888888777 6 2  23444555677889999977763       45677777


Q ss_pred             HHHhhhcCCCccCCccEEEEeC
Q 006654          143 RMLQKKELPKLSEGFSRITLCQ  164 (636)
Q Consensus       143 rm~~~fe~P~~~Egfd~Viii~  164 (636)
                      ++.+...+......|+.+++-+
T Consensus       161 rl~~a~~e~~~~~~~d~~i~Nd  182 (219)
T 1s96_A          161 RMAQAVAEMSHYAEYDYLIVND  182 (219)
T ss_dssp             HHHHHHHHHTTGGGSSEEEECS
T ss_pred             HHHHHHHHHhhccCCCEEEECc
Confidence            7765422222345678775443

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=98.17  E-value=5.5e-06  Score=81.07  Aligned_cols=98  Identities=10%  Similarity=0.038  Sum_probs=62.8

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC--CCC----------CcH----H------------------
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK--GKS----------GTK----V------------------   65 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~--~~~----------~~~----~------------------   65 (636)
                      ..+|.|.|++||||||+|+.|+++++  +..+|.+.++.  ...          +..    .                  
T Consensus         6 ~~iI~i~g~~GsGk~ti~~~la~~lg--~~~~D~~~~~~~a~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~   83 (201)
T 3fdi_A            6 QIIIAIGREFGSGGHLVAKKLAEHYN--IPLYSKELLDEVAKDGRYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQDIA   83 (201)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHTT--CCEECHHHHHHTTCC---------------------------------CHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHhC--cCEECHHHHHHHHHhcCCCHHHHHHHhhhchhHHHHHhccccccccccHHHH
Confidence            35799999999999999999999999  55577665531  000          000    0                  


Q ss_pred             HHHHHHHHHHh--CCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           66 QCLTSASSALK--KGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        66 ~~~~~~~~~L~--~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      .....+.+.|.  ...++|+++.-  -    .+ -+... .....|||.+|.+++.+|+..|..
T Consensus        84 ~~~~~~i~~la~~~~~~~Vi~Gr~--g----~~-vl~~~-~~~~~V~L~A~~e~r~~R~~~~~~  139 (201)
T 3fdi_A           84 IRQFNFIRKKANEEKESFVIVGRC--A----EE-ILSDN-PNMISAFILGDKDTKTKRVMEREG  139 (201)
T ss_dssp             HHHHHHHHHHHHTSCCCEEEESTT--H----HH-HTTTC-TTEEEEEEEECHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhcCCCEEEEECC--c----ch-hcCCC-CCeEEEEEECCHHHHHHHHHHHhC
Confidence            12244444566  56678888731  1    11 12221 124578999999999999987743

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=98.14  E-value=1.3e-05  Score=84.61  Aligned_cols=107  Identities=21%  Similarity=0.218  Sum_probs=67.6

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc-----------------CCC---------C--C--cHHHH-
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-----------------KGK---------S--G--TKVQC-   67 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir-----------------~~~---------~--~--~~~~~-   67 (636)
                      ++.+|+|+||+||||||+|..|+++++  ...||.|.+.                 .+.         .  .  +...+ 
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~--~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~  116 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFP--LEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFR  116 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSC--EEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCC--CcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHH
Confidence            446999999999999999999999988  6678876651                 000         0  0  11222 


Q ss_pred             ---HHHHHHHHhCCCeEEEeCC-CCCHHHHH-HH-----H---------Hh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           68 ---LTSASSALKKGKSVFLDRC-NLEREQRT-DF-----V---------KL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        68 ---~~~~~~~L~~G~~VIID~t-n~~~~~R~-~l-----~---------~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                         ...+.+....|+.+|+-|. .+....-. .+     .         .+ ....+...+|+|+++.++|.+|+..|..
T Consensus       117 ~~a~~~i~~i~~~g~~pIlvGGtglYi~all~g~~~p~~~d~~~a~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~R~~  196 (339)
T 3a8t_A          117 SLAGKAVSEITGRRKLPVLVGGSNSFIHALLVDRFDSSGPGVFEEGSHSVVSSELRYDCCFLWVDVSVKVLTDYLAKRVD  196 (339)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECCCHHHHHHHHBSSCCTTCC-------------CBSSEEEEEEEECCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHhCCCCCcccChhhhcccCccccccccCeEEEEEeCCHHHHHHHHHhhcc
Confidence               2334445578887777653 22211100 00     0         01 1233567789999999999999999854

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=98.13  E-value=3.7e-05  Score=76.35  Aligned_cols=38  Identities=21%  Similarity=0.330  Sum_probs=32.3

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir   57 (636)
                      ..+.+|.|+|+|||||||+++.|++.++  +.+++.|.+.
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg--~~~~d~d~~~   51 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAKDFG--FTYLDTGAMY   51 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHHC--CEEEEHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHcC--CceecCCCee
Confidence            4566899999999999999999999988  6678877663

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.11  E-value=3e-06  Score=83.93  Aligned_cols=26  Identities=15%  Similarity=0.529  Sum_probs=17.0

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHH-HHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVM-RSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~La-k~~   44 (636)
                      +..++.|+|++||||||+++.|+ ..+
T Consensus        26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           26 VGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CCCEEEEECSCC----CHHHHHHC---
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            34689999999999999999999 765

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=98.11  E-value=2.2e-05  Score=76.53  Aligned_cols=106  Identities=17%  Similarity=0.190  Sum_probs=61.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHc---CCCeEEeeh-------hhhc----CCCCCc----------HHHHHHHHHHHHhC
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ-------DTIN----KGKSGT----------KVQCLTSASSALKK   77 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~-------D~ir----~~~~~~----------~~~~~~~~~~~L~~   77 (636)
                      +|++-|+.||||||+++.|++.+   |..+.....       ..++    ......          +.+....+..+|..
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~L~~   81 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYLSE   81 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            68899999999999999998765   333333220       1111    111111          12233667788899


Q ss_pred             CCeEEEeCCCCCH------------HHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           78 GKSVFLDRCNLER------------EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        78 G~~VIID~tn~~~------------~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      |..||.|....+.            ..-..+... ...-.+-.+++|++|.+++.+|...|.+
T Consensus        82 g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~dr  144 (197)
T 3hjn_A           82 GYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNR  144 (197)
T ss_dssp             TCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CT
T ss_pred             CCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcCc
Confidence            9999999843222            111222222 1111122578999999999999766544

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.10  E-value=1.7e-06  Score=82.53  Aligned_cols=27  Identities=15%  Similarity=0.391  Sum_probs=23.6

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      +..+++|+||+||||||+++.|...++
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            456899999999999999999998753

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=98.08  E-value=1.4e-07  Score=91.57  Aligned_cols=106  Identities=23%  Similarity=0.301  Sum_probs=62.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCC---CeEEee---------hhhhcC---CCC-----CcH-HHHH---------HHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSAR---PWARIC---------QDTINK---GKS-----GTK-VQCL---------TSA   71 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~---~~~~Is---------~D~ir~---~~~-----~~~-~~~~---------~~~   71 (636)
                      +|++.|++||||||+++.|++.++.   .+..+.         .+.++.   +..     ... ..++         ..+
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i   81 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAVHTI   81 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESSEEEEEEEEEEHHHHEEEEEEEEEEEHHHHHHHHHHHHHEEHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCCCcchhhHHHHHHcccccccCCCHhHHHHHHHHHHhhhHHHH
Confidence            6899999999999999999988741   111121         222221   100     111 1111         123


Q ss_pred             HHHHhCCCeEEEeCCCCCHHHH-------------HHHH-HhC----CCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           72 SSALKKGKSVFLDRCNLEREQR-------------TDFV-KLG----GPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        72 ~~~L~~G~~VIID~tn~~~~~R-------------~~l~-~l~----~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      ...+..|..||+|+........             ..|+ .+.    .....-.+++|++|.+++.+|+..|..
T Consensus        82 ~~~l~~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~  155 (214)
T 1gtv_A           82 QGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQ  155 (214)
T ss_dssp             HHEEEEEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             HHHhhCCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHHHHHcccc
Confidence            4445667889999976443111             1221 211    111334688999999999999999965

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=97.97  E-value=3.3e-06  Score=85.46  Aligned_cols=44  Identities=18%  Similarity=0.351  Sum_probs=26.8

Q ss_pred             hhhhhhhcc-ccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEe
Q 006654            7 DTCKAKDEE-KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARI   51 (636)
Q Consensus         7 ~~~~~~~~~-~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~I   51 (636)
                      .+|.-.... ....+.+|++.|++||||||+++.|++.+.. +.++
T Consensus        10 ~~~~~~~~~~~~~~~~~I~ieG~~GsGKST~~~~L~~~l~~-~~~i   54 (263)
T 1p5z_B           10 RSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCED-WEVV   54 (263)
T ss_dssp             -------------CCEEEEEECSTTSSHHHHHTTTGGGCTT-EEEE
T ss_pred             ccCCCCcccccccCceEEEEECCCCCCHHHHHHHHHHhcCC-CEEE
Confidence            345443332 2345789999999999999999999998741 4444

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.97  E-value=2e-05  Score=76.81  Aligned_cols=120  Identities=23%  Similarity=0.250  Sum_probs=67.9

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhcCC-----------CCC-----cHHHHHHHHHHHHhC
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKG-----------KSG-----TKVQCLTSASSALKK   77 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir~~-----------~~~-----~~~~~~~~~~~~L~~   77 (636)
                      ..++.+|.|+|++||||||+++.|+..+.   .....+..|.+.-.           ..+     ....+ ......|..
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~   97 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGF-QRLCHALKH   97 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHH-HHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHH-HHHHHHHhc
Confidence            45678999999999999999999987764   22445555443210           001     11111 222233322


Q ss_pred             C--------------------------CeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 006654           78 G--------------------------KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEG  130 (636)
Q Consensus        78 G--------------------------~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~  130 (636)
                      |                          +.+|+|+..+-... ..|..+ ....   .++++++|.+++.+|+.+|....+
T Consensus        98 ~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de-~~~~~l~~~~d---~~i~vd~~~~~~~~R~~~R~~~~g  173 (208)
T 3c8u_A           98 QERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDA-PGWRDLTAIWD---VSIRLEVPMADLEARLVQRWLDHG  173 (208)
T ss_dssp             CSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCS-TTGGGGGGTCS---EEEEECCCHHHHHHHHHHHHHHTT
T ss_pred             CCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCC-chhHHHHHhcC---EEEEEeCCHHHHHHHHHHHHHhcC
Confidence            2                          45778873321100 022223 2233   378999999999999999964322


Q ss_pred             CCCCCChHHHHHHHH
Q 006654          131 NLQGGKAAAVVNRML  145 (636)
Q Consensus       131 ~~~~~vp~evi~rm~  145 (636)
                          ...+++..++.
T Consensus       174 ----~t~~~~~~~~~  184 (208)
T 3c8u_A          174 ----LNHDAAVARAQ  184 (208)
T ss_dssp             ----CCHHHHHHHHH
T ss_pred             ----CCHHHHHHHHH
Confidence                24455555544

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.97  E-value=4.1e-05  Score=76.88  Aligned_cols=36  Identities=19%  Similarity=0.326  Sum_probs=31.6

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i   56 (636)
                      +|.+|.+.|+|||||||+++.|++.++  +.+++.|.+
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~lg--~~~~d~g~~   43 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARALG--ARYLDTGAM   43 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHT--CEEEEHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC--CCcccCCcH
Confidence            567899999999999999999999998  677887776

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.95  E-value=9.9e-05  Score=71.55  Aligned_cols=133  Identities=12%  Similarity=0.181  Sum_probs=71.1

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC---------------------CCeEEeehhhhcC---------------CCCC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA---------------------RPWARICQDTINK---------------GKSG   62 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~---------------------~~~~~Is~D~ir~---------------~~~~   62 (636)
                      +..+++|+||+||||||+.+.|...+.                     ..+..++.+.++.               ...+
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~~g~~~~~~~~~~~~~~i~~~~~l~~~~~~~n~~g   82 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYG   82 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcccCCceEEEccHHHHHHHHHcCCCEeeeeecCccCC
Confidence            345789999999999999999987642                     1122222222210               0001


Q ss_pred             cHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEe-CCHHHHHHHHHhcccccCCCCCCChHHHH
Q 006654           63 TKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLD-LPAKLCISRSVKRIEHEGNLQGGKAAAVV  141 (636)
Q Consensus        63 ~~~~~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld-~p~e~l~~R~~~R~~~~~~~~~~vp~evi  141 (636)
                      .   -...+.++++.+..+++|.   ..   ..+..+........+++++ ++..++.+|...|..       ...+.+.
T Consensus        83 ~---~~~~i~~~~~~~~~~~~~~---~~---~g~~~~~~~~~~~~~~~l~~p~~~ilde~~~~~d~-------~~e~~i~  146 (198)
T 1lvg_A           83 T---SKEAVRAVQAMNRICVLDV---DL---QGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNT-------ETEESLA  146 (198)
T ss_dssp             E---EHHHHHHHHHTTCEEEEEC---CH---HHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTC-------SCHHHHH
T ss_pred             C---CHHHHHHHHHcCCcEEEEC---CH---HHHHHHHhcCCCcEEEEEeCCCHHHHHHHHHhcCC-------CCHHHHH
Confidence            1   0134556677777777764   11   2222231112233434554 567889999988865       3445555


Q ss_pred             HHHHhhhcCCCcc---CCccEEEEeCChh
Q 006654          142 NRMLQKKELPKLS---EGFSRITLCQNEN  167 (636)
Q Consensus       142 ~rm~~~fe~P~~~---Egfd~Viii~~~~  167 (636)
                      +++......-...   ..|+.+++.++.+
T Consensus       147 ~~l~~~~~~~~~a~~~~~~D~iivnd~le  175 (198)
T 1lvg_A          147 KRLAAARTDMESSKEPGLFDLVIINDDLD  175 (198)
T ss_dssp             HHHHHHHHHTTGGGSTTTCSEEEECSSHH
T ss_pred             HHHHHHHHHHHHhhccCCceEEEECCCHH
Confidence            5554432211112   5678876665543

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.95  E-value=5.3e-05  Score=79.67  Aligned_cols=36  Identities=14%  Similarity=0.251  Sum_probs=31.9

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i   56 (636)
                      |+.+|+|+||+||||||+|+.|++.++  +.+|+.|.+
T Consensus         4 m~~~i~i~GptGsGKTtla~~La~~l~--~~iis~Ds~   39 (323)
T 3crm_A            4 LPPAIFLMGPTAAGKTDLAMALADALP--CELISVDSA   39 (323)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSC--EEEEEECTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcC--CcEEeccch
Confidence            677999999999999999999999998  677887764

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=97.93  E-value=4.2e-05  Score=76.28  Aligned_cols=110  Identities=15%  Similarity=0.096  Sum_probs=55.0

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcCC----CeEE-eeh-----------hhhcCC-CCCcHHH-----------H
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSAR----PWAR-ICQ-----------DTINKG-KSGTKVQ-----------C   67 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~----~~~~-Is~-----------D~ir~~-~~~~~~~-----------~   67 (636)
                      ...++.+|++.|++||||||+++.|++.+..    .+.. ...           +.+... ......+           +
T Consensus        17 ~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R~~~~   96 (223)
T 3ld9_A           17 QGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLFKAQGLDSLSELLFFIAMRREHF   96 (223)
T ss_dssp             --CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence            4456889999999999999999999986542    2222 110           112221 1121111           1


Q ss_pred             HHHHHHHHhCCCeEEEeCCCCC------------HHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           68 LTSASSALKKGKSVFLDRCNLE------------REQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        68 ~~~~~~~L~~G~~VIID~tn~~------------~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      .+.+..+|.+|..||.|.....            .+.-..+... .. -.+=.+|+|++|.+++.+|+ .|.+
T Consensus        97 ~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~-~~PDl~I~Ldv~~e~~~~Ri-~rdr  167 (223)
T 3ld9_A           97 VKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVID-VYPDITFIIDVDINESLSRS-CKNG  167 (223)
T ss_dssp             HHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCS-SCCSEEEEEECC-------------
T ss_pred             HHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhc-CCCCeEEEEeCCHHHHHHHh-ccCc
Confidence            1235568899999999993321            1122222222 22 12226889999999999998 4433

>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A*

Probab=97.91  E-value=2.3e-06  Score=80.20  Aligned_cols=65  Identities=12%  Similarity=0.073  Sum_probs=51.8

Q ss_pred             ccCcceeccc-ccccchhhcccCChhhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHH
Q 006654          239 LEGQEITSLL-SDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVE  305 (636)
Q Consensus       239 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~  305 (636)
                      ..+-|.+.+. +..  ....+.+..++..++.++++++++|||||+||||+||||.+++++||.+++.
T Consensus        73 ~~Vih~v~~~~~~~--~~~~~~l~~~l~~~l~~a~~~~~~sIa~P~IgtG~~G~~~~~v~~ii~~~~~  138 (149)
T 2eee_A           73 RYIYYLITKKRASH--KPTYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIEEVFE  138 (149)
T ss_dssp             SEEEEEEEESSTTS--CCCHHHHHHHHHHHHHHHHHHTCCEEECCCCCCTTTTCCHHHHHHHHHHHHT
T ss_pred             CEEEEEEecCCCCC--CCCHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCHHHHHHHHHHHhc
Confidence            3444544444 332  2335678889999999999999999999999999999999999999977665

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=97.87  E-value=4.5e-05  Score=76.01  Aligned_cols=35  Identities=11%  Similarity=0.163  Sum_probs=30.9

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i   56 (636)
                      +.+|.+.|++||||||+|+.|+++++  +..++.|.+
T Consensus        14 ~~iI~i~g~~gsGk~~i~~~la~~lg--~~~~d~~~~   48 (223)
T 3hdt_A           14 NLIITIEREYGSGGRIVGKKLAEELG--IHFYDDDIL   48 (223)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHT--CEEECHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHcC--CcEEcHHHH
Confidence            46899999999999999999999999  666887765

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=97.86  E-value=2e-05  Score=78.29  Aligned_cols=107  Identities=13%  Similarity=0.167  Sum_probs=64.2

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh------------hhhcCCC--CCcH-H---------HHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ------------DTINKGK--SGTK-V---------QCLTSASSA   74 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~------------D~ir~~~--~~~~-~---------~~~~~~~~~   74 (636)
                      +..+|++.|++||||||+++.|++.++.....+..            +.+....  .... .         +....+..+
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~~ep~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~~~I~pa   83 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVDKIKKD   83 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHHCSSEEEEESSCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcccceEEEecCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999999998742222211            1111111  1111 1         112456677


Q ss_pred             HhCCCeEEEeCCCCCHHHH----------HHHHHh-CCCCCeE-EEEEE-eCCHHHHHHHHHhc
Q 006654           75 LKKGKSVFLDRCNLEREQR----------TDFVKL-GGPEVDV-HAVVL-DLPAKLCISRSVKR  125 (636)
Q Consensus        75 L~~G~~VIID~tn~~~~~R----------~~l~~l-~~~g~~v-~vV~L-d~p~e~l~~R~~~R  125 (636)
                      |.+|..||.|......-..          ..|+.. ....... .+|+| ++|.+++.+|...|
T Consensus        84 L~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~  147 (216)
T 3tmk_A           84 LLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFG  147 (216)
T ss_dssp             HHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSS
T ss_pred             HHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccC
Confidence            8999999999943332111          123222 2222222 68899 99999998886544

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.79  E-value=5.1e-05  Score=79.73  Aligned_cols=108  Identities=18%  Similarity=0.163  Sum_probs=66.2

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcC-----CCeEEeehhhhcCC-----------CCC---c-HHHHHHHHHHHHh
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTINKG-----------KSG---T-KVQCLTSASSALK   76 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~-----~~~~~Is~D~ir~~-----------~~~---~-~~~~~~~~~~~L~   76 (636)
                      ...|.+|.|+|++||||||+++.|...+.     .....++.|.+...           ..+   + ....+......+.
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~~~~~~~~~g~P~~~D~~~l~~~L~~L~  168 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQGLMKRKGFPESYDMPSLLRVLNAIK  168 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHTTCGGGTTSGGGBCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhhhhHHHHhhccCcccccHHHHHHHHHhhh
Confidence            45788999999999999999999988764     23566787776311           011   1 1122233444454


Q ss_pred             CCC---------------------------eEEEeCCCCCHHHH-----HHHHHh-CCCCCeEEEEEEeCCHHHHHHHHH
Q 006654           77 KGK---------------------------SVFLDRCNLEREQR-----TDFVKL-GGPEVDVHAVVLDLPAKLCISRSV  123 (636)
Q Consensus        77 ~G~---------------------------~VIID~tn~~~~~R-----~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~  123 (636)
                      .|+                           -+|+++.+.-...+     ..|..+ ...+   ..|++++|.+++++|..
T Consensus       169 ~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~~~l~~~~D---~~I~Vda~~d~~~~R~i  245 (321)
T 3tqc_A          169 SGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFFD---FSLFVDAQAQVIQKWYI  245 (321)
T ss_dssp             TTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSCCCCGGGGCS---EEEEEECCHHHHHHHHH
T ss_pred             ccccccccchhhhhccccccCceeeccCCCEEEEEccccccccccccccchhhhhhhhcC---eEEEEECCHHHHHHHHH
Confidence            443                           25667744333221     011111 1122   37899999999999999


Q ss_pred             hccc
Q 006654          124 KRIE  127 (636)
Q Consensus       124 ~R~~  127 (636)
                      .|..
T Consensus       246 ~Rd~  249 (321)
T 3tqc_A          246 DRVL  249 (321)
T ss_dssp             HHHH
T ss_pred             Hhcc
Confidence            9974

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.73  E-value=0.00017  Score=70.52  Aligned_cols=27  Identities=19%  Similarity=0.471  Sum_probs=24.3

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ++.+|+|+||+||||||+++.|.+.++
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            567899999999999999999998764

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.61  E-value=0.0006  Score=71.34  Aligned_cols=36  Identities=25%  Similarity=0.324  Sum_probs=31.1

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i   56 (636)
                      ++.+|+++||+||||||+|..|++.++  ...|+.|.+
T Consensus         2 ~~~~i~i~GptgsGKt~la~~La~~~~--~~iis~Ds~   37 (322)
T 3exa_A            2 KEKLVAIVGPTAVGKTKTSVMLAKRLN--GEVISGDSM   37 (322)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHTTT--EEEEECCGG
T ss_pred             CCcEEEEECCCcCCHHHHHHHHHHhCc--cceeecCcc
Confidence            356899999999999999999999987  677887765

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.60  E-value=0.00041  Score=67.02  Aligned_cols=40  Identities=23%  Similarity=0.276  Sum_probs=31.3

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir   57 (636)
                      .++.+|.|+|++||||||+++.|+..++..+..+++|.+.
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~   43 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYY   43 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCB
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccc
Confidence            3567899999999999999999998765224567777654

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.56  E-value=0.00016  Score=74.78  Aligned_cols=40  Identities=20%  Similarity=0.247  Sum_probs=30.1

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhcC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINK   58 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir~   58 (636)
                      ++.+|.|.|++||||||+|+.|++.++   ..+.+|+.|.+..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r   46 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR   46 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence            466899999999999999999998765   3367789888763

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.55  E-value=0.00015  Score=74.83  Aligned_cols=70  Identities=21%  Similarity=0.373  Sum_probs=47.7

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHH----HHHHHHHhCC--CeEEEeCC
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCL----TSASSALKKG--KSVFLDRC   86 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~----~~~~~~L~~G--~~VIID~t   86 (636)
                      ...|..++|.||||+|||++|+.+++.++.++..++...+...+.+.....+    ..+...++..  ..++||..
T Consensus        33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEi  108 (293)
T 3t15_A           33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDL  108 (293)
T ss_dssp             CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEech
Confidence            3457788999999999999999999999988888988777766666443322    2222222332  34677874

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.55  E-value=0.0012  Score=68.95  Aligned_cols=38  Identities=16%  Similarity=0.207  Sum_probs=32.5

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i   56 (636)
                      ..+|.+|+++||+||||||+|..|++.++  ..+|+.|..
T Consensus         7 ~~~~~~i~i~GptgsGKt~la~~La~~~~--~~iis~Ds~   44 (316)
T 3foz_A            7 ASLPKAIFLMGPTASGKTALAIELRKILP--VELISVDSA   44 (316)
T ss_dssp             CCCCEEEEEECCTTSCHHHHHHHHHHHSC--EEEEECCTT
T ss_pred             CCCCcEEEEECCCccCHHHHHHHHHHhCC--CcEEecccc
Confidence            35688999999999999999999999987  667777653

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=97.50  E-value=5.5e-05  Score=75.28  Aligned_cols=27  Identities=22%  Similarity=0.279  Sum_probs=24.7

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      +|.+|++.|++||||||+++.|++.+.
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            467899999999999999999999984

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.50  E-value=0.00075  Score=67.30  Aligned_cols=39  Identities=31%  Similarity=0.483  Sum_probs=30.2

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCC--------eEEeehhhhc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARP--------WARICQDTIN   57 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~--------~~~Is~D~ir   57 (636)
                      ++.+|.|+|++||||||+++.|+..+|..        ...+++|.+.
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~   70 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFY   70 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGB
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCc
Confidence            56789999999999999999999877622        2256766553

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.43  E-value=0.0002  Score=78.21  Aligned_cols=54  Identities=17%  Similarity=0.211  Sum_probs=44.8

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHH
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSA   71 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~   71 (636)
                      ..|.=|+|.||||+|||++|++++.+++.++..++...+...+.+.....+..+
T Consensus       213 ~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~  266 (437)
T 4b4t_L          213 KPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREM  266 (437)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHH
Confidence            356778999999999999999999999988888998888888888665544433

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.42  E-value=0.00017  Score=78.68  Aligned_cols=54  Identities=15%  Similarity=0.273  Sum_probs=45.1

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHH
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSA   71 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~   71 (636)
                      +.|+=|+|.||||+|||++|++++.+++.++..++...+...+.|.....++.+
T Consensus       213 ~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~l  266 (434)
T 4b4t_M          213 RAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDA  266 (434)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHH
T ss_pred             CCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHH
Confidence            356778999999999999999999999988888998888888888665544333

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.41  E-value=0.00019  Score=77.51  Aligned_cols=54  Identities=19%  Similarity=0.301  Sum_probs=44.9

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHH
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSA   71 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~   71 (636)
                      ..|.=|+|.||||+|||.+|++++.+.+.++..++...+...+.|.....++.+
T Consensus       180 ~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~l  233 (405)
T 4b4t_J          180 AQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVREL  233 (405)
T ss_dssp             CCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHH
T ss_pred             CCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHH
Confidence            345668999999999999999999999988888998888888888766554433

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.41  E-value=0.002  Score=63.32  Aligned_cols=139  Identities=13%  Similarity=0.122  Sum_probs=72.0

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehh----------------------hhcC----C-----------CC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQD----------------------TINK----G-----------KS   61 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D----------------------~ir~----~-----------~~   61 (636)
                      +..++.|+||+||||||+.+.|+..++ ..+.+..+                      .+..    +           ..
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g~~p-G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  100 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLNEFP-NYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNFY  100 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHST-TTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC-CcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhhhcccccC
Confidence            456789999999999999999998762 11222111                      0000    0           00


Q ss_pred             CcHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHH
Q 006654           62 GTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV  141 (636)
Q Consensus        62 ~~~~~~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi  141 (636)
                      +..   ...+.+.+..+..+++|. .+.-.++++  ..-.......++.-..+..++.+|...|..       .....+.
T Consensus       101 g~~---~~~i~~~l~~~~~~il~~-~lsggq~qR--~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~-------~~~~~i~  167 (218)
T 1z6g_A          101 GTL---KSEYDKAKEQNKICLFEM-NINGVKQLK--KSTHIKNALYIFIKPPSTDVLLSRLLTRNT-------ENQEQIQ  167 (218)
T ss_dssp             EEE---HHHHHHHHHTTCEEEEEE-CHHHHHHHT--TCSSCCSCEEEEEECSCHHHHHHHHHHTCC-------CCHHHHH
T ss_pred             CCc---HHHHHHHHhCCCcEEEEe-cHHHHHHHH--HHhcCCCcEEEEEeCcCHHHHHHHHHhcCC-------CCHHHHH
Confidence            000   134566777888888873 222222221  111001113343335788899999988865       2334444


Q ss_pred             HHHHhhhcCCCc--cCCccEEEEeCChhHHHH
Q 006654          142 NRMLQKKELPKL--SEGFSRITLCQNENDVQA  171 (636)
Q Consensus       142 ~rm~~~fe~P~~--~Egfd~Viii~~~~~vda  171 (636)
                      +++......-..  ...++.|++..+.+++-+
T Consensus       168 ~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~  199 (218)
T 1z6g_A          168 KRMEQLNIELHEANLLNFNLSIINDDLTLTYQ  199 (218)
T ss_dssp             HHHHHHHHHHHHHTTSCCSEEEECSSHHHHHH
T ss_pred             HHHHHHHHHHHhhcccCCCEEEECCCHHHHHH
Confidence            444322111001  156788877665544433

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.40  E-value=0.00091  Score=69.36  Aligned_cols=39  Identities=21%  Similarity=0.198  Sum_probs=30.0

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcC-----CCeEEeehhhh
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTI   56 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~-----~~~~~Is~D~i   56 (636)
                      .++.+|.|+|++||||||+++.|+..++     .....++.|.+
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~  121 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF  121 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence            5678999999999999999999998654     12445565554

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.40  E-value=0.00023  Score=77.53  Aligned_cols=52  Identities=19%  Similarity=0.289  Sum_probs=43.4

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHH
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLT   69 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~   69 (636)
                      ..|+=|+|.||||+|||++|+++|..++.++..++...+...+.|.....++
T Consensus       204 ~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir  255 (428)
T 4b4t_K          204 DPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVR  255 (428)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHH
Confidence            3466789999999999999999999999888889888888888776655443

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.35  E-value=0.00039  Score=70.35  Aligned_cols=68  Identities=18%  Similarity=0.325  Sum_probs=48.0

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCC--CeEEEeCC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKG--KSVFLDRC   86 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G--~~VIID~t   86 (636)
                      .+.-++|.|+||+||||+|+.++..++.++..++...+.....+........+.......  ..++||..
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi  119 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEI  119 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETT
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECH
Confidence            455689999999999999999999998777778877776666555444333333333333  34677874

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.34  E-value=0.00026  Score=77.64  Aligned_cols=54  Identities=15%  Similarity=0.273  Sum_probs=45.4

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHH
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSA   71 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~   71 (636)
                      ..|+=|+|.||||+|||++|++++.+++.++..++...+...+.|.....++.+
T Consensus       241 ~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~l  294 (467)
T 4b4t_H          241 DPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVREL  294 (467)
T ss_dssp             CCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHH
T ss_pred             CCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHH
Confidence            457778999999999999999999999988888998888888888766544433

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.32  E-value=0.00031  Score=76.37  Aligned_cols=56  Identities=21%  Similarity=0.279  Sum_probs=45.9

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHH
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASS   73 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~   73 (636)
                      ..|.=|+|.||||+|||.+|++++.+++.++..++...+...+.+..+..++.+-.
T Consensus       214 ~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~  269 (437)
T 4b4t_I          214 KPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFK  269 (437)
T ss_dssp             CCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHH
T ss_pred             CCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHH
Confidence            34667899999999999999999999998888899888888888876655544433

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.32  E-value=0.00039  Score=70.84  Aligned_cols=68  Identities=15%  Similarity=0.314  Sum_probs=47.1

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHH-h-CCCeEEEeCC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSAL-K-KGKSVFLDRC   86 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L-~-~G~~VIID~t   86 (636)
                      .+.-++|.|+||+||||+|+.++..++.++..++...+.....+........+.... . .+..++||..
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi  122 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEV  122 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETG
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccH
Confidence            456789999999999999999999998777777776666555555444333332222 2 2345778874

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.29  E-value=0.00051  Score=68.25  Aligned_cols=69  Identities=16%  Similarity=0.271  Sum_probs=45.1

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHH-HHHHHHHhC-CCeEEEeCCC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCL-TSASSALKK-GKSVFLDRCN   87 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~-~~~~~~L~~-G~~VIID~tn   87 (636)
                      .+.-++|.|+||+||||+|+.+++.++.++..++...+.....+...... .....+... +..++||...
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid  108 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEID  108 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC-
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcc
Confidence            45568899999999999999999999888877776666544434332222 222222222 3346778754

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=97.28  E-value=0.0023  Score=69.07  Aligned_cols=34  Identities=21%  Similarity=0.371  Sum_probs=29.7

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhh
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT   55 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~   55 (636)
                      +.+|+++||+||||||+|..|++.++  ...|+.|.
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~~--~~iis~Ds   35 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKFN--GEVINSDS   35 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHHT--EEEEECCT
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHCC--CeEeecCc
Confidence            45889999999999999999999988  56788765

>2fg1_A Conserved hypothetical protein BT1257; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.25A {Bacteroides thetaiotaomicron} SCOP: c.50.1.2 PDB: 2afc_A

Probab=97.26  E-value=4.4e-05  Score=72.08  Aligned_cols=49  Identities=10%  Similarity=0.006  Sum_probs=42.2

Q ss_pred             hcccCChhhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHH
Q 006654          256 VKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVE  305 (636)
Q Consensus       256 ~~~~l~~~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~  305 (636)
                      ..+.+..|+..++..+.+++. |||||.||||+||||.+++++||.+...
T Consensus        99 ~~~~l~~~l~~~~~~a~~~~~-sIa~P~Ig~G~~G~~w~~v~~ii~~~l~  147 (158)
T 2fg1_A           99 RYDAVRQCLKEVALFTIAHKA-SVHMPRIGCGLAGGKWELMEQIIKEELI  147 (158)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTC-EEEECCTTCSTTCCCHHHHHHHHHHHTG
T ss_pred             cHHHHHHHHHHHHHHHHHhCC-eEEecCcCCCCCCCCHHHHHHHHHHHhc
Confidence            355677788888889988887 9999999999999999999998876554

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.20  E-value=0.00058  Score=68.22  Aligned_cols=43  Identities=26%  Similarity=0.420  Sum_probs=33.9

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG   62 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~   62 (636)
                      |.-++|.|+||+||||+|+.++..++.++..++...+.....+
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~   87 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVG   87 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCC
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhh
Confidence            4458899999999999999999998877877776555444333

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.20  E-value=0.00027  Score=69.96  Aligned_cols=26  Identities=31%  Similarity=0.514  Sum_probs=23.3

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      .+..+|.+.|+.||||||+++.|+..
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            45679999999999999999999876

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=97.17  E-value=0.00047  Score=72.01  Aligned_cols=68  Identities=16%  Similarity=0.276  Sum_probs=46.0

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc-CCCeEEeehhhhcCCCCCcHHHHHHHHHHHHh-C-CCeEEEeCC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS-ARPWARICQDTINKGKSGTKVQCLTSASSALK-K-GKSVFLDRC   86 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~-~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~-~-G~~VIID~t   86 (636)
                      .+.-|+|.||||+|||++|+.++..+ +.++..++...+...+.+........+..... . ...++||..
T Consensus        44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEi  114 (322)
T 1xwi_A           44 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEI  114 (322)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETT
T ss_pred             CCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecH
Confidence            45678999999999999999999998 66677777666655555544333333333332 2 335778874

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=97.13  E-value=0.00063  Score=70.74  Aligned_cols=69  Identities=14%  Similarity=0.308  Sum_probs=49.7

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHh-CC-CeEEEeCCC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK-KG-KSVFLDRCN   87 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~-~G-~~VIID~tn   87 (636)
                      .+.-++|.|+||+|||++|+.++...+.++..++...+...+.+.....+..+..... .. ..++||...
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid  120 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVD  120 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGG
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHHHhcCCeEEEechhh
Confidence            3567899999999999999999999988888888877776666665544433333333 22 357788743

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.07  E-value=0.0019  Score=65.96  Aligned_cols=68  Identities=16%  Similarity=0.242  Sum_probs=45.6

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC-------CCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA-------RPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN   87 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~-------~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn   87 (636)
                      .+.-++|.|+||+|||++|+.+++.++       .++..++...+.....+........+.+.. .+..++||...
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~-~~~vl~iDEid  140 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA-MGGVLFIDEAY  140 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH-TTSEEEEETGG
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhc-CCCEEEEEChh
Confidence            344689999999999999999988763       256777777776655554433222222222 45678899853

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.07  E-value=0.00037  Score=73.74  Aligned_cols=36  Identities=28%  Similarity=0.451  Sum_probs=32.2

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i   56 (636)
                      |+.+|+++|++||||||+|+.|++.++  ..+|+.|.+
T Consensus         6 m~~lI~I~GptgSGKTtla~~La~~l~--~~iis~Ds~   41 (340)
T 3d3q_A            6 KPFLIVIVGPTASGKTELSIEVAKKFN--GEIISGDSM   41 (340)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTT--EEEEECCSS
T ss_pred             CCceEEEECCCcCcHHHHHHHHHHHcC--Cceeccccc
Confidence            557899999999999999999999988  677888876

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=97.06  E-value=0.00099  Score=70.44  Aligned_cols=69  Identities=14%  Similarity=0.288  Sum_probs=48.3

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHh--CCCeEEEeCC
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK--KGKSVFLDRC   86 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~--~G~~VIID~t   86 (636)
                      ..+.-++|.|+||+||||+|+.+++.++.++..++...+...+.+........+.....  .+..++||..
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEi  185 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEI  185 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCc
Confidence            34667899999999999999999999987787888777766655544443333333222  2345788863

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=97.03  E-value=0.00076  Score=71.38  Aligned_cols=68  Identities=16%  Similarity=0.325  Sum_probs=45.2

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHh--CCCeEEEeCCC
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK--KGKSVFLDRCN   87 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~--~G~~VIID~tn   87 (636)
                      +.-|+|.|+||+|||++|+.++..++.++..++...+...+.+........+.....  .+..++||...
T Consensus        84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid  153 (355)
T 2qp9_X           84 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVD  153 (355)
T ss_dssp             CCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGG
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechH
Confidence            445789999999999999999999997787788766666555543333333333332  33457888743

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.01  E-value=0.0012  Score=68.86  Aligned_cols=40  Identities=18%  Similarity=0.129  Sum_probs=31.0

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcC-----CCeEEeehhhh
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTI   56 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~-----~~~~~Is~D~i   56 (636)
                      ..++.+|.|+|++||||||+++.|+..+.     .....+.+|.+
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~  131 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF  131 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence            45678999999999999999999987653     23456666654

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.94  E-value=0.0041  Score=62.62  Aligned_cols=37  Identities=27%  Similarity=0.594  Sum_probs=31.2

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ   53 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~   53 (636)
                      ...+.-++|.|+||+|||++|+.+++..+.++..++.
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~   97 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICS   97 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEEC
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeC
Confidence            3456788999999999999999999998877766653

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.94  E-value=0.00068  Score=63.96  Aligned_cols=81  Identities=15%  Similarity=0.064  Sum_probs=47.9

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc----CCCeEEeehhhhcCCCCCcHHH-HHHHHHHHHhCCCeEEEeCC---CCCH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTINKGKSGTKVQ-CLTSASSALKKGKSVFLDRC---NLER   90 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~----~~~~~~Is~D~ir~~~~~~~~~-~~~~~~~~L~~G~~VIID~t---n~~~   90 (636)
                      ....++|+|+||+||||+++.++..+    +.....++...+.......... ....+.+.+.....+|+|..   ....
T Consensus        37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~~~~~  116 (180)
T 3ec2_A           37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSERLSD  116 (180)
T ss_dssp             GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSSCCCH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCCcCCH
Confidence            35678999999999999999998665    4333445543332110000000 00123445667778999985   3556


Q ss_pred             HHHHHHHHh
Q 006654           91 EQRTDFVKL   99 (636)
Q Consensus        91 ~~R~~l~~l   99 (636)
                      +.+..+..+
T Consensus       117 ~~~~~l~~l  125 (180)
T 3ec2_A          117 WQRELISYI  125 (180)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666666554

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=96.92  E-value=0.0017  Score=68.47  Aligned_cols=27  Identities=22%  Similarity=0.279  Sum_probs=24.4

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      +...|++-|+-||||||+++.|++.+.
T Consensus         6 ~~~fI~~EG~dGaGKTT~~~~La~~L~   32 (334)
T 1p6x_A            6 TIVRIYLDGVYGIGKSTTGRVMASAAS   32 (334)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            457899999999999999999998875

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.89  E-value=0.0015  Score=60.54  Aligned_cols=26  Identities=23%  Similarity=0.494  Sum_probs=22.8

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      .+..++|.|+||+||||+++.+++.+
T Consensus        42 ~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           42 TKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHH
Confidence            45568899999999999999999875

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.75  E-value=0.0018  Score=66.07  Aligned_cols=40  Identities=23%  Similarity=0.399  Sum_probs=31.5

Q ss_pred             EEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC
Q 006654           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG   62 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~   62 (636)
                      ++|.|||||||||+++.++...+.++..++...+...+.+
T Consensus        47 vlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~   86 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVG   86 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTH
T ss_pred             EEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhh
Confidence            8999999999999999999998866666776555443333

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.74  E-value=0.0017  Score=76.00  Aligned_cols=68  Identities=22%  Similarity=0.309  Sum_probs=49.7

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHH-HHHHhCCCe-EEEeC
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSA-SSALKKGKS-VFLDR   85 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~-~~~L~~G~~-VIID~   85 (636)
                      ..|.=|+|.||||+|||++|++++.+++.++..++...+...+.+..+..++.+ ..+...... ++||.
T Consensus       236 ~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDE  305 (806)
T 3cf2_A          236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDE  305 (806)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEES
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHcCCeEEEEeh
Confidence            356779999999999999999999999988888888777777777655544433 333333333 55666

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.73  E-value=0.0027  Score=63.20  Aligned_cols=36  Identities=25%  Similarity=0.510  Sum_probs=30.0

Q ss_pred             EEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC
Q 006654           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK   58 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~   58 (636)
                      ++|+|+||+||||+++.++...+.++..++...+..
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~   87 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE   87 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHH
Confidence            899999999999999999998876777777655433

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=96.72  E-value=0.0014  Score=72.88  Aligned_cols=62  Identities=3%  Similarity=0.076  Sum_probs=44.2

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCC-----CeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCCC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSAR-----PWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNL   88 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~-----~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn~   88 (636)
                      ...+|+|+|+|||||||+|+.|+++++.     .+..++.|.       .. .+...+...++.|..||++..+.
T Consensus       394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~-------~~-ei~~va~~~~~~G~~Vv~~~~sp  460 (511)
T 1g8f_A          394 QGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN-------KT-ELLSLIQDFIGSGSGLIIPDQWE  460 (511)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT-------CH-HHHTTHHHHHHTTCEEEESSCCC
T ss_pred             cceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC-------cH-HHHHHHHHHHhcCCeEEEecCCH
Confidence            4578999999999999999999999873     345677776       11 12233444557787788776444

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.70  E-value=0.0015  Score=60.61  Aligned_cols=26  Identities=27%  Similarity=0.440  Sum_probs=22.8

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      .+..++|.|+||+||||+++.+++.+
T Consensus        42 ~~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           42 TKNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHH
Confidence            35567999999999999999999876

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.69  E-value=0.00077  Score=69.48  Aligned_cols=39  Identities=18%  Similarity=0.313  Sum_probs=31.7

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i   56 (636)
                      ..+.-++|.|+||+||||+|+.++..++.++..++...+
T Consensus        47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l   85 (301)
T 3cf0_A           47 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL   85 (301)
T ss_dssp             CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHH
T ss_pred             CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHH
Confidence            345678999999999999999999998876766665443

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=96.66  E-value=0.0018  Score=69.07  Aligned_cols=69  Identities=17%  Similarity=0.322  Sum_probs=42.9

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHH-HHhCC-CeEEEeCCC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASS-ALKKG-KSVFLDRCN   87 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~-~L~~G-~~VIID~tn   87 (636)
                      .+.-++|.|+||+|||++|+.++...+.++..++...+.....+.....+..+.. +.... ..++||...
T Consensus       147 ~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid  217 (389)
T 3vfd_A          147 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVD  217 (389)
T ss_dssp             CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGG
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECch
Confidence            3567899999999999999999999987777777666655444433332322222 22333 357888853

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=96.60  E-value=0.0036  Score=69.11  Aligned_cols=67  Identities=21%  Similarity=0.293  Sum_probs=45.1

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHH-HHHHHHHhC-CCeEEEeCC
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCL-TSASSALKK-GKSVFLDRC   86 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~-~~~~~~L~~-G~~VIID~t   86 (636)
                      |.-++|+|+||+||||+|+.++...+.++..++...+.....+...... ..+..+... ...++||..
T Consensus        49 p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEi  117 (476)
T 2ce7_A           49 PKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEI  117 (476)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETG
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEech
Confidence            4448899999999999999999999988888887666555544333222 233333332 334677763

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.59  E-value=0.0067  Score=58.65  Aligned_cols=27  Identities=22%  Similarity=0.302  Sum_probs=23.7

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      +..++.|+|++||||||+.+.|+..+.
T Consensus        19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           19 VGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            456899999999999999999988763

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=96.57  E-value=0.0024  Score=69.83  Aligned_cols=54  Identities=13%  Similarity=0.286  Sum_probs=41.3

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC--CCeEEeehhhhcCCCCCcHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQDTINKGKSGTKVQCLTSAS   72 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~--~~~~~Is~D~ir~~~~~~~~~~~~~~~   72 (636)
                      .+.-++|.||||+|||++|+.+++.++  .++..++...+...+.+....+.....
T Consensus        62 ~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  117 (456)
T 2c9o_A           62 AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFR  117 (456)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHHHHHHHH
T ss_pred             CCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHHHHHHHH
Confidence            345688999999999999999999998  678888877777666665554333333

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.57  E-value=0.0098  Score=64.98  Aligned_cols=40  Identities=33%  Similarity=0.463  Sum_probs=32.1

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhc
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir   57 (636)
                      .+|.+|+++|+|||||||++.+|+..+   +.....++.|.++
T Consensus        98 ~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R  140 (443)
T 3dm5_A           98 EKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWR  140 (443)
T ss_dssp             SSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSS
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence            358999999999999999999988654   4456677877664

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.54  E-value=0.013  Score=53.48  Aligned_cols=90  Identities=21%  Similarity=0.216  Sum_probs=50.4

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCC-CCHHHHHHH
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN-LEREQRTDF   96 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn-~~~~~R~~l   96 (636)
                      .-|+|.|+||+|||++|+.+....   +.++. ++...+...  .....   .+.  ...+..++||... +.......+
T Consensus        25 ~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~--~~~~~---~~~--~a~~g~l~ldei~~l~~~~q~~L   96 (145)
T 3n70_A           25 IAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA--PQLND---FIA--LAQGGTLVLSHPEHLTREQQYHL   96 (145)
T ss_dssp             SCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS--SCHHH---HHH--HHTTSCEEEECGGGSCHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc--hhhhc---HHH--HcCCcEEEEcChHHCCHHHHHHH
Confidence            347899999999999999999875   34566 654433322  11111   111  1245678889865 444444555


Q ss_pred             HHh-CCCCCeEEE-EEEeCCHHHH
Q 006654           97 VKL-GGPEVDVHA-VVLDLPAKLC  118 (636)
Q Consensus        97 ~~l-~~~g~~v~v-V~Ld~p~e~l  118 (636)
                      ..+ ......+.+ .--+.+.+.+
T Consensus        97 l~~l~~~~~~~~~I~~t~~~~~~~  120 (145)
T 3n70_A           97 VQLQSQEHRPFRLIGIGDTSLVEL  120 (145)
T ss_dssp             HHHHHSSSCSSCEEEEESSCHHHH
T ss_pred             HHHHhhcCCCEEEEEECCcCHHHH
Confidence            555 332222222 3335555543

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.51  E-value=0.0047  Score=62.52  Aligned_cols=35  Identities=26%  Similarity=0.513  Sum_probs=29.5

Q ss_pred             EEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir   57 (636)
                      ++|+|+||+||||+++.++...+.++..++...+.
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~  110 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV  110 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHH
Confidence            89999999999999999999887677777754443

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=96.50  E-value=0.0041  Score=68.82  Aligned_cols=69  Identities=20%  Similarity=0.267  Sum_probs=47.8

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCC--eEEEeCC
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGK--SVFLDRC   86 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~--~VIID~t   86 (636)
                      ..+.-++|.|+||+|||++|+.++...+.++..++...+.....+.....+..+-+....+.  .++||..
T Consensus       236 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEI  306 (489)
T 3hu3_A          236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDEL  306 (489)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESH
T ss_pred             CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecch
Confidence            34556899999999999999999999988888888777766666654433333222233332  4677873

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.47  E-value=0.0032  Score=59.70  Aligned_cols=22  Identities=27%  Similarity=0.587  Sum_probs=20.5

Q ss_pred             EEEEccCCCcHHHHHHHHHHHc
Q 006654           23 VIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      ++|.|+||+||||+++.+++.+
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            8999999999999999999874

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.46  E-value=0.0045  Score=57.28  Aligned_cols=56  Identities=16%  Similarity=0.210  Sum_probs=38.0

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN   87 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn   87 (636)
                      ....++|+|++||||||+++.++...   +.....++...+...             ..+.....+|+|...
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-------------~~~~~~~lLilDE~~   93 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-------------DAAFEAEYLAVDQVE   93 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC-------------GGGGGCSEEEEESTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH-------------HHHhCCCEEEEeCcc
Confidence            44578899999999999999998765   433455555444322             124455678888843

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.39  E-value=0.005  Score=63.77  Aligned_cols=75  Identities=16%  Similarity=0.221  Sum_probs=49.5

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCC-CCHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN-LEREQRTDFV   97 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn-~~~~~R~~l~   97 (636)
                      .+.-++|.|+||+|||++|+.+++..+.++..++...+.     .... +..+...+..+..++||... +.......+.
T Consensus        54 ~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll  127 (338)
T 3pfi_A           54 CLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE-----KSGD-LAAILTNLSEGDILFIDEIHRLSPAIEEVLY  127 (338)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC-----SHHH-HHHHHHTCCTTCEEEEETGGGCCHHHHHHHH
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc-----chhH-HHHHHHhccCCCEEEEechhhcCHHHHHHHH
Confidence            344589999999999999999999998777777755442     1111 22223334556778999865 4444444554


Q ss_pred             Hh
Q 006654           98 KL   99 (636)
Q Consensus        98 ~l   99 (636)
                      ..
T Consensus       128 ~~  129 (338)
T 3pfi_A          128 PA  129 (338)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=96.33  E-value=0.0043  Score=65.10  Aligned_cols=68  Identities=13%  Similarity=0.111  Sum_probs=40.6

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh--hhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCC
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ--DTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN   87 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~--D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn   87 (636)
                      ..++++.|+||+||||||.+++...+.+...++.  ++..+......+.....+.+.+...+.+|||...
T Consensus       123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~LLVIDsI~  192 (331)
T 2vhj_A          123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDSLK  192 (331)
T ss_dssp             SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCSEEEEECCT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCCEEEEeccc
Confidence            4567899999999999999998754322222333  1111111123344445555556544488999843

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=96.30  E-value=0.0029  Score=66.67  Aligned_cols=39  Identities=23%  Similarity=0.428  Sum_probs=32.5

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir   57 (636)
                      .+.-++|.|+||+|||++|+.+++.++.++..++...+.
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~   88 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLT   88 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhc
Confidence            345688999999999999999999998888777765443

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=96.30  E-value=0.002  Score=70.31  Aligned_cols=42  Identities=19%  Similarity=0.317  Sum_probs=30.2

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc-CCCeEEeehhhhcCCC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS-ARPWARICQDTINKGK   60 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~-~~~~~~Is~D~ir~~~   60 (636)
                      .+.-|+|.||||+|||++|+.++..+ +.++..++...+...+
T Consensus       166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~  208 (444)
T 2zan_A          166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKW  208 (444)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC------
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhh
Confidence            45678999999999999999999998 6566667765554433

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=96.29  E-value=0.004  Score=63.82  Aligned_cols=76  Identities=16%  Similarity=0.255  Sum_probs=48.0

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCCCC-HHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLE-REQRTDFV   97 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn~~-~~~R~~l~   97 (636)
                      .+..++|.|+||+||||+|+.+++.++.++..++...+.     ....+...+...+..+..++||..... ......+.
T Consensus        37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~-----~~~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~  111 (324)
T 1hqc_A           37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIE-----KPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLY  111 (324)
T ss_dssp             CCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCC-----SHHHHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccC-----ChHHHHHHHHHhccCCCEEEEECCcccccchHHHHH
Confidence            345678999999999999999999988666666544331     122222322222455667899996543 33444444


Q ss_pred             Hh
Q 006654           98 KL   99 (636)
Q Consensus        98 ~l   99 (636)
                      ..
T Consensus       112 ~~  113 (324)
T 1hqc_A          112 PA  113 (324)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.29  E-value=0.014  Score=63.67  Aligned_cols=40  Identities=20%  Similarity=0.277  Sum_probs=31.1

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhc
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir   57 (636)
                      .+|.+|+++|++||||||++..|+..+   +.....++.|.++
T Consensus        95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r  137 (433)
T 3kl4_A           95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR  137 (433)
T ss_dssp             SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence            458999999999999999999988543   4456667766553

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.27  E-value=0.0032  Score=60.99  Aligned_cols=38  Identities=13%  Similarity=0.058  Sum_probs=28.9

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhh
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTI   56 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~i   56 (636)
                      .+..++|.|+||+||||+++.+++.+.   ..+..++...+
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~   91 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH   91 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence            456789999999999999999987654   34555665444

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=96.26  E-value=0.0029  Score=65.24  Aligned_cols=78  Identities=12%  Similarity=0.140  Sum_probs=48.2

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHh------CCCeEEEeCCCCC
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK------KGKSVFLDRCNLE   89 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~------~G~~VIID~tn~~   89 (636)
                      ....|.++++.|+||+||||+++.+++.++..+..++....     + ...+...+.....      ..+.+|||....-
T Consensus        44 ~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~-----~-~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l  117 (324)
T 3u61_B           44 KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDC-----K-IDFVRGPLTNFASAASFDGRQKVIVIDEFDRS  117 (324)
T ss_dssp             TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTC-----C-HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCG
T ss_pred             cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccccc-----C-HHHHHHHHHHHHhhcccCCCCeEEEEECCccc
Confidence            34456788889999999999999999998855555664322     1 2222222333332      2345889997644


Q ss_pred             --HHHHHHHHHh
Q 006654           90 --REQRTDFVKL   99 (636)
Q Consensus        90 --~~~R~~l~~l   99 (636)
                        ......+..+
T Consensus       118 ~~~~~~~~L~~~  129 (324)
T 3u61_B          118 GLAESQRHLRSF  129 (324)
T ss_dssp             GGHHHHHHHHHH
T ss_pred             CcHHHHHHHHHH
Confidence              4444455554

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.26  E-value=0.011  Score=61.65  Aligned_cols=27  Identities=26%  Similarity=0.393  Sum_probs=23.8

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      ..+..++|.|+||+||||+++.+++..
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            456678999999999999999999876

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.25  E-value=0.0031  Score=65.03  Aligned_cols=41  Identities=17%  Similarity=0.182  Sum_probs=31.9

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcCC-----CeEEe-ehhhhc
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSAR-----PWARI-CQDTIN   57 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~-----~~~~I-s~D~ir   57 (636)
                      ..++.+|.++|++||||||+++.|+..++.     ....+ ++|.+.
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~   74 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY   74 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence            456889999999999999999999877642     23445 887763

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=96.24  E-value=0.018  Score=59.54  Aligned_cols=25  Identities=12%  Similarity=0.189  Sum_probs=20.9

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ..+++|+|+||   ||+|+.++|.+.++
T Consensus       103 ~~~r~ivl~GP---gK~tl~~~L~~~~~  127 (295)
T 1kjw_A          103 HYARPIIILGP---TKDRANDDLLSEFP  127 (295)
T ss_dssp             CSCCCEEEEST---THHHHHHHHHHHCT
T ss_pred             CCCCEEEEECC---CHHHHHHHHHhhCc
Confidence            34578999997   79999999998764

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.22  E-value=0.0037  Score=73.08  Aligned_cols=58  Identities=14%  Similarity=0.173  Sum_probs=44.8

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHh
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK   76 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~   76 (636)
                      .|.=++|.||||+|||.+|++++.+.+.++..++...+...+.+..+..++.+-+..+
T Consensus       510 ~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar  567 (806)
T 3cf2_A          510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKAR  567 (806)
T ss_dssp             CCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHH
Confidence            4556889999999999999999999998888888888878887766554444433333

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.19  E-value=0.0046  Score=63.91  Aligned_cols=68  Identities=12%  Similarity=0.125  Sum_probs=42.2

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCCCCcHH-HHHHHHHHHHhCCCeEEEeCCC
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTKV-QCLTSASSALKKGKSVFLDRCN   87 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~~~~~~-~~~~~~~~~L~~G~~VIID~tn   87 (636)
                      +.-++|.|+||+||||+++.++..+   +.++..++...+......... .........+.....++||...
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~  108 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQ  108 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGG
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcc
Confidence            4457899999999999999999876   556777776544211000000 0012223344556778999853

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=96.18  E-value=0.0074  Score=63.79  Aligned_cols=37  Identities=19%  Similarity=0.375  Sum_probs=31.2

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i   56 (636)
                      +.-++|.|+||+||||+|+.+++.++.++..++...+
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~  108 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSL  108 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGC
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhh
Confidence            4458899999999999999999999877877775544

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=96.15  E-value=0.0062  Score=66.60  Aligned_cols=44  Identities=18%  Similarity=0.472  Sum_probs=34.4

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC-CCCC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-GKSG   62 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~-~~~~   62 (636)
                      .+.-|+|+||||+||||+|+.+++.++.++..++...+.. ++.+
T Consensus        49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG   93 (444)
T 1g41_A           49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG   93 (444)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CC
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceee
Confidence            3456899999999999999999999998888888766554 3544

>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}

Probab=96.14  E-value=0.012  Score=61.07  Aligned_cols=105  Identities=11%  Similarity=0.163  Sum_probs=70.1

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCC-eEEeeh-----hhhcCCCCCcHHHHHHHHHHHH-hCCCeEEEeCCCCCH
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARP-WARICQ-----DTINKGKSGTKVQCLTSASSAL-KKGKSVFLDRCNLER   90 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~-~~~Is~-----D~ir~~~~~~~~~~~~~~~~~L-~~G~~VIID~tn~~~   90 (636)
                      ..+.+|++-|.-||||||..+.|.+.+... +.++..     ..++. +      .+......| ..|.-+|.|.+-+..
T Consensus        84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt~eE~~~-~------yl~R~~~~LP~~G~IvIfDRswYs~  156 (304)
T 3czq_A           84 GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPTETERGQ-W------YFQRYVATFPTAGEFVLFDRSWYNR  156 (304)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCCHHHHTS-C------TTHHHHTTCCCTTCEEEEEECGGGG
T ss_pred             CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcChHHHhc-h------HHHHHHHhcccCCeEEEEECCcchH
Confidence            458999999999999999999999888633 323321     11111 1      123444556 789999999844332


Q ss_pred             H------------HH-HHHHH------h-CCCCCeEEEEEEeCCHHHHHHHHHhccccc
Q 006654           91 E------------QR-TDFVK------L-GGPEVDVHAVVLDLPAKLCISRSVKRIEHE  129 (636)
Q Consensus        91 ~------------~R-~~l~~------l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~  129 (636)
                      -            +. ..+..      + ...|..+..++|+++.++..+|+..|...+
T Consensus       157 v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R~~dp  215 (304)
T 3czq_A          157 AGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRRHDP  215 (304)
T ss_dssp             TTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHHHHCT
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHhhcCc
Confidence            1            11 11222      2 235677888999999999999999886543

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=96.12  E-value=0.022  Score=58.86  Aligned_cols=130  Identities=15%  Similarity=0.150  Sum_probs=68.9

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeE-Eee---------------------hhhh----cCCCCCcHH-----
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWA-RIC---------------------QDTI----NKGKSGTKV-----   65 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~-~Is---------------------~D~i----r~~~~~~~~-----   65 (636)
                      ...++.|||+||   ||+|+.++|.+.++..+. .++                     .+.+    .++.+..+.     
T Consensus        97 ~~~~RpvVl~Gp---~K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~~i~~~~flE~a~~~gn  173 (292)
T 3tvt_A           97 INYTRPVIILGP---LKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDN  173 (292)
T ss_dssp             CSSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTE
T ss_pred             CCCCCeEEEeCC---CHHHHHHHHHHhChhhccccccCCccCCcCCccCCccccccCCHHHHHHHHhcCceEEEEEEccc
Confidence            345677889997   599999999998763221 111                     1101    011000000     


Q ss_pred             ---HHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEe-CCHHHHHHHHHhcccccCCCCCCChHHH
Q 006654           66 ---QCLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLD-LPAKLCISRSVKRIEHEGNLQGGKAAAV  140 (636)
Q Consensus        66 ---~~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld-~p~e~l~~R~~~R~~~~~~~~~~vp~ev  140 (636)
                         .....+.+.++.|+.+|+|-.      ......+ ...-.. .+|++. .+.+++.+|+..|..       +....+
T Consensus       174 ~YGT~~~~V~~~~~~gk~viLdid------~qg~~~lk~~~~~p-i~IFI~PpS~e~L~~r~~~r~~-------e~~~~~  239 (292)
T 3tvt_A          174 LYGTSVASVREVAEKGKHCILDVS------GNAIKRLQVAQLYP-VAVFIKPKSVDSVMEMNRRMTE-------EQAKKT  239 (292)
T ss_dssp             EEEEEHHHHHHHHHHTCEEEECCC------THHHHHHHHTTCCC-EEEEECCSCHHHHHHTCTTSCT-------THHHHH
T ss_pred             eeEEehHHHHHHHHcCCcEEEecc------chhhhhcccccccc-eEEEEECCCHHHHHHHHhCCCc-------hhHHHH
Confidence               012567788899999999983      2223333 222223 355655 456777777655543       233445


Q ss_pred             HHHHHhh-hcCCCccCCccEEEEeCCh
Q 006654          141 VNRMLQK-KELPKLSEGFSRITLCQNE  166 (636)
Q Consensus       141 i~rm~~~-fe~P~~~Egfd~Viii~~~  166 (636)
                      ..++.+. .+.   .+.|+.+++-++.
T Consensus       240 ~~r~~k~e~e~---~~~fD~vIvNddl  263 (292)
T 3tvt_A          240 YERAIKMEQEF---GEYFTGVVQGDTI  263 (292)
T ss_dssp             HHHHHHHHHHH---TTTCSEEECCSSH
T ss_pred             HHHHHHHHHhh---hhhCCEEEECcCH
Confidence            5554432 222   3457877554443

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=96.12  E-value=0.041  Score=58.83  Aligned_cols=29  Identities=21%  Similarity=0.221  Sum_probs=23.0

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      +.....|.+-|+-||||||+++.|++.+.
T Consensus        46 ~~~~~fIt~EG~dGsGKTT~~~~Lae~L~   74 (376)
T 1of1_A           46 MPTLLRVYIDGPHGMGKTTTTQLLVALGS   74 (376)
T ss_dssp             CCEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence            34567899999999999999999998764

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.08  E-value=0.013  Score=61.41  Aligned_cols=27  Identities=15%  Similarity=0.294  Sum_probs=23.8

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      ..+..++|.|+||+||||+++.+++.+
T Consensus        43 ~~~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           43 EVKFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            446689999999999999999999875

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.06  E-value=0.013  Score=56.07  Aligned_cols=27  Identities=15%  Similarity=0.304  Sum_probs=23.5

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      .+..+++.|+||+||||+++.+++...
T Consensus        44 ~~~~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           44 IHHAYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             CCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            345889999999999999999998764

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.04  E-value=0.0049  Score=62.46  Aligned_cols=40  Identities=15%  Similarity=0.435  Sum_probs=33.3

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK   58 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~   58 (636)
                      .+.-++|.|+||+|||++|+.+++.++.++..++...+..
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~   88 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE   88 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhccc
Confidence            3556789999999999999999999987787787666544

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=96.02  E-value=0.023  Score=59.11  Aligned_cols=95  Identities=9%  Similarity=0.025  Sum_probs=58.4

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEE---eehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCCCCHHHH
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWAR---ICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQR   93 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~---Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn~~~~~R   93 (636)
                      ...++-|||+||   ||+|+.++|.+.++..|..   +..| +.++.+.    -...+.+.+++|+.+|+|-      ..
T Consensus       142 ~~~~RPvVl~GP---~k~~l~~~L~~~~P~~F~~~v~~~r~-i~~~~fi----s~~~V~~vl~~Gk~~ILDI------d~  207 (308)
T 3kfv_A          142 ASFKRPVVILGP---VADIAMQKLTAEMPDQFEIAETVSRT-DSPSKII----KLDTVRVIAEKDKHALLDV------TP  207 (308)
T ss_dssp             CSSCCCEEEEST---THHHHHHHHHHHCTTTEEECCCC---------CC----CHHHHHHHHHTTCEEEECC------CH
T ss_pred             cCCCCeEEEeCc---cHHHHHHHHHHhCccccccccccccc-ccCCCee----cHHHHHHHHHCCCcEEEEE------CH
Confidence            345566889999   7999999999998744432   2223 2233322    3467788889999999998      33


Q ss_pred             HHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 006654           94 TDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI  126 (636)
Q Consensus        94 ~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~  126 (636)
                      +....+ .....++.++....+.++|.+| ..|.
T Consensus       208 QGa~~lk~~~~~pi~IFI~PPS~eeL~~r-r~R~  240 (308)
T 3kfv_A          208 SAIERLNYVQYYPIVVFFIPESRPALKAL-RQWL  240 (308)
T ss_dssp             HHHHHHHHTTCCCEEEEEEESCHHHHHHH-HHHH
T ss_pred             HHHHHHHhcCCCCEEEEEeCCCHHHHHHH-HhcC
Confidence            344344 2233445555556777888876 4443

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=95.99  E-value=0.013  Score=61.13  Aligned_cols=63  Identities=17%  Similarity=0.303  Sum_probs=38.7

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN   87 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn   87 (636)
                      .+..++|+||||+||||+++.++...+..+...+...+.     ....+ ..+...+..+.-++||..+
T Consensus        50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~-----~~~~l-~~~~~~~~~~~v~~iDE~~  112 (334)
T 1in4_A           50 VLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV-----KQGDM-AAILTSLERGDVLFIDEIH  112 (334)
T ss_dssp             CCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCC-----SHHHH-HHHHHHCCTTCEEEEETGG
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhc-----CHHHH-HHHHHHccCCCEEEEcchh
Confidence            346689999999999999999999987554433332221     11111 1222234445567888754

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.93  E-value=0.0086  Score=61.89  Aligned_cols=40  Identities=25%  Similarity=0.352  Sum_probs=30.9

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHc----CCCeEEeehhhhc
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTIN   57 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~----~~~~~~Is~D~ir   57 (636)
                      .++.+++++|++||||||++..|+..+    |.....++.|.++
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r  146 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR  146 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc
Confidence            356799999999999999999988543    4456667777653

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=95.91  E-value=0.034  Score=61.76  Aligned_cols=40  Identities=35%  Similarity=0.516  Sum_probs=30.4

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhc
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir   57 (636)
                      .++.+|+++|+||+||||++.+|+..+   +.....++.|.++
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r  141 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR  141 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence            467899999999999999999998654   4556677776644

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=95.91  E-value=0.0097  Score=66.03  Aligned_cols=41  Identities=24%  Similarity=0.403  Sum_probs=33.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG   62 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~   62 (636)
                      =++|+|+||+||||+|+.++...+.++..++...+.....+
T Consensus        66 GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g  106 (499)
T 2dhr_A           66 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVG  106 (499)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhh
Confidence            38999999999999999999998877888887666554444

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.90  E-value=0.045  Score=57.01  Aligned_cols=33  Identities=24%  Similarity=0.536  Sum_probs=27.1

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCC--CeEEee
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSAR--PWARIC   52 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~--~~~~Is   52 (636)
                      +..++|.|+||+|||++|+.+++.++.  ++..++
T Consensus        70 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~  104 (368)
T 3uk6_A           70 GRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIA  104 (368)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhcccCCccccc
Confidence            367899999999999999999998873  454444

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...

Probab=95.85  E-value=0.067  Score=56.20  Aligned_cols=27  Identities=22%  Similarity=0.316  Sum_probs=21.6

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ....|.+-|+-||||||+++.|++.+.
T Consensus         3 ~~~fI~~EG~dGsGKTT~~~~La~~L~   29 (331)
T 1e2k_A            3 TLLRVYIDGPHGMGKTTTTQLLVALGS   29 (331)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            346889999999999999999998764

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=95.79  E-value=0.0042  Score=59.82  Aligned_cols=33  Identities=24%  Similarity=0.389  Sum_probs=27.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhh
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT   55 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~   55 (636)
                      +++++|.+||||||||++++.. +.+..++.+..
T Consensus         1 ~ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~   33 (180)
T 1c9k_A            1 MILVTGGARSGKSRHAEALIGD-APQVLYIATSQ   33 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred             CEEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence            3789999999999999999977 65666777643

>3sig_A PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1.28A {Thermomonospora curvata} PDB: 3sih_A 3sii_A* 3sij_A

Probab=95.76  E-value=0.0026  Score=65.19  Aligned_cols=50  Identities=8%  Similarity=0.033  Sum_probs=44.9

Q ss_pred             cccCChhhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHH
Q 006654          257 KGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEE  306 (636)
Q Consensus       257 ~~~l~~~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~  306 (636)
                      .+.+......+|.+|..+|+++|++||+|+|+||+|.+++|++..+.+.+
T Consensus       193 ~~~l~~rir~vL~iA~~~g~~~LVLGA~GCGvfgnpp~~VA~~~~~vL~~  242 (277)
T 3sig_A          193 GRVLRGRAAKVLAAARHHGHRRLVLGAWGCGVFGNDPAQVAETFAGLLLD  242 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCEEEECCTTSSTTCCCHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHHHHcCCCEEEECCcccCcCCCCHHHHHHHHHHHHhh
Confidence            44566677779999999999999999999999999999999999998874

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=95.75  E-value=0.005  Score=56.13  Aligned_cols=69  Identities=14%  Similarity=0.210  Sum_probs=41.3

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCCC-CHHHHHHHHHh
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNL-EREQRTDFVKL   99 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn~-~~~~R~~l~~l   99 (636)
                      -|+|.|+||+|||++|+.+....+ ++..++...+....       .....+ ...+..+++|.... .......+..+
T Consensus        29 ~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~-------~~~~~~-~a~~~~l~lDei~~l~~~~q~~Ll~~   98 (143)
T 3co5_A           29 PVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM-------PMELLQ-KAEGGVLYVGDIAQYSRNIQTGITFI   98 (143)
T ss_dssp             CEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------HHHHHH-HTTTSEEEEEECTTCCHHHHHHHHHH
T ss_pred             cEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------hhhHHH-hCCCCeEEEeChHHCCHHHHHHHHHH
Confidence            378999999999999999987765 56555543332111       111111 23456788888653 44444444444

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=95.74  E-value=0.018  Score=61.89  Aligned_cols=99  Identities=10%  Similarity=0.030  Sum_probs=58.5

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC-CCCc--HHHHHHHHHHHHhCCCeEEEeCCCCCHHHH
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG-KSGT--KVQCLTSASSALKKGKSVFLDRCNLEREQR   93 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~-~~~~--~~~~~~~~~~~L~~G~~VIID~tn~~~~~R   93 (636)
                      +..+++|||+||+|   +|+.++|.+.++..+.. .+-.-|.+ ..|-  +..-...+.+.+++|+.+|+|-      ..
T Consensus       229 ~~~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~-~tr~pR~gE~dG~~Y~Fv~~~~V~~~~~~Gk~~iLdI------d~  298 (391)
T 3tsz_A          229 AGFLRPVTIFGPIA---DVAREKLAREEPDIYQI-AKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDV------TP  298 (391)
T ss_dssp             CSSCCCEEEESTTH---HHHHHHHHHHCTTTEEE-CCCCCCCSSSCCC--CCCCHHHHHHHHTTTCEEEECC------CH
T ss_pred             CCCCCEEEEECCCH---HHHHHHHHhhCcccccc-ccCCCCCcccCCccCCcCcHHHHHHHHHcCCEEEEEe------CH
Confidence            34678899999998   89999999987643432 11001111 0010  0112477788899999999998      23


Q ss_pred             HHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 006654           94 TDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI  126 (636)
Q Consensus        94 ~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~  126 (636)
                      +....+ ...-.++.++....+.++|.+| ..|.
T Consensus       299 qg~~~l~~~~~~p~~IFI~PPS~~~L~~~-~~r~  331 (391)
T 3tsz_A          299 NAVDRLNYAQWYPIVVFLNPDSKQGVKTM-RMRL  331 (391)
T ss_dssp             HHHHHHHHTTCCCEEEEEECCCHHHHHHH-HHHH
T ss_pred             HHHHHHHhCCCCCEEEEEeCcCHHHHHHH-HhcC
Confidence            333333 2222344444445667888776 4443

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.72  E-value=0.01  Score=61.72  Aligned_cols=26  Identities=27%  Similarity=0.437  Sum_probs=22.3

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      ..|. +++.|+||+||||+++.++..+
T Consensus        35 ~~~~-~ll~Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E           35 DLPH-LLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             CCCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred             CCCe-EEEECCCCCCHHHHHHHHHHHH
Confidence            3455 8999999999999999999853

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.72  E-value=0.024  Score=58.88  Aligned_cols=35  Identities=20%  Similarity=0.236  Sum_probs=28.1

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHc------CCCeEEee
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSS------ARPWARIC   52 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~------~~~~~~Is   52 (636)
                      ..+..++|.|+||+||||+++.+++..      +..+..++
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~   83 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN   83 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence            456688999999999999999999876      54455565

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=95.66  E-value=0.016  Score=63.12  Aligned_cols=40  Identities=35%  Similarity=0.390  Sum_probs=31.5

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhc
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir   57 (636)
                      .+|.+|+++|+||+||||++.+|+..+   +.....++.|..+
T Consensus        97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r  139 (432)
T 2v3c_C           97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR  139 (432)
T ss_dssp             SSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccC
Confidence            456789999999999999999998654   3456677877654

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.65  E-value=0.033  Score=58.11  Aligned_cols=78  Identities=17%  Similarity=0.236  Sum_probs=45.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcC----CCeEEeehhhhc--------------C---CCCCcHHHHHHHHHHHHh-CCC
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSA----RPWARICQDTIN--------------K---GKSGTKVQCLTSASSALK-KGK   79 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~----~~~~~Is~D~ir--------------~---~~~~~~~~~~~~~~~~L~-~G~   79 (636)
                      .++|.|+||+||||+++.++....    ..+..++.....              .   ............+...+. .+.
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~  125 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDL  125 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCC
Confidence            789999999999999999998873    234455521110              0   001123334444444443 232


Q ss_pred             --eEEEeCCC-CCHHHHHHHHHh
Q 006654           80 --SVFLDRCN-LEREQRTDFVKL   99 (636)
Q Consensus        80 --~VIID~tn-~~~~~R~~l~~l   99 (636)
                        .+|||... +.......+..+
T Consensus       126 ~~vlilDE~~~l~~~~~~~L~~~  148 (389)
T 1fnn_A          126 YMFLVLDDAFNLAPDILSTFIRL  148 (389)
T ss_dssp             CEEEEEETGGGSCHHHHHHHHHH
T ss_pred             eEEEEEECccccchHHHHHHHHH
Confidence              57889854 445555555555

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.64  E-value=0.0033  Score=62.90  Aligned_cols=37  Identities=24%  Similarity=0.451  Sum_probs=29.5

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir   57 (636)
                      .-++|.|+||+||||+|+.++...+.++..++...+.
T Consensus        45 ~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~   81 (268)
T 2r62_A           45 KGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFI   81 (268)
T ss_dssp             SCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTT
T ss_pred             ceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHH
Confidence            3378999999999999999999988766666654443

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.60  E-value=0.01  Score=61.63  Aligned_cols=40  Identities=23%  Similarity=0.426  Sum_probs=31.7

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhc
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir   57 (636)
                      .++.+|+++|++||||||++..|+..+   +.....++.|.++
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r  144 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR  144 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence            467899999999999999999998654   3445667777654

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.56  E-value=0.011  Score=61.57  Aligned_cols=25  Identities=24%  Similarity=0.457  Sum_probs=21.9

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      .|. +++.|+||+||||+++.+++.+
T Consensus        46 ~~~-~ll~Gp~G~GKTtla~~la~~l   70 (340)
T 1sxj_C           46 LPH-LLFYGPPGTGKTSTIVALAREI   70 (340)
T ss_dssp             CCC-EEEECSSSSSHHHHHHHHHHHH
T ss_pred             Cce-EEEECCCCCCHHHHHHHHHHHH
Confidence            344 7899999999999999999875

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=95.53  E-value=0.008  Score=65.47  Aligned_cols=67  Identities=12%  Similarity=0.102  Sum_probs=40.6

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHc-----CCCeEEeehhhhcCCCCCcHH-HHHHHHHHHHh-CCCeEEEeCC
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSS-----ARPWARICQDTINKGKSGTKV-QCLTSASSALK-KGKSVFLDRC   86 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~-----~~~~~~Is~D~ir~~~~~~~~-~~~~~~~~~L~-~G~~VIID~t   86 (636)
                      +.-++|.|+||+||||+++.++...     +..+..++...+......... .........+. ....++||..
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi  203 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDV  203 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECG
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCc
Confidence            4568899999999999999998766     445566665443211000000 00122334445 5667899985

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.50  E-value=0.012  Score=56.17  Aligned_cols=62  Identities=15%  Similarity=0.103  Sum_probs=37.8

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcC----CC-CCcHHHHHHHHHHHHhCCCeEEEeCC
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINK----GK-SGTKVQCLTSASSALKKGKSVFLDRC   86 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~----~~-~~~~~~~~~~~~~~L~~G~~VIID~t   86 (636)
                      ..++|.|+||+||||+|+.++...   +.++..++...+..    .. ....    ......+.....+|||..
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~lilDei  124 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTM----NEKLDYIKKVPVLMLDDL  124 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCC----HHHHHHHHHSSEEEEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchH----HHHHHHhcCCCEEEEcCC
Confidence            678899999999999999998765   33454555433211    00 0011    122233444567899985

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=95.47  E-value=0.0094  Score=57.23  Aligned_cols=36  Identities=22%  Similarity=0.156  Sum_probs=27.4

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ   53 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~   53 (636)
                      ++..+++++|+||||||||+..++...+.+...++.
T Consensus        18 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~   53 (220)
T 2cvh_A           18 APGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDT   53 (220)
T ss_dssp             CTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEES
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEEC
Confidence            345689999999999999999998744434445554

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=95.46  E-value=0.0095  Score=60.47  Aligned_cols=105  Identities=12%  Similarity=0.137  Sum_probs=54.0

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc-C----CCeEEeehhhhcCCCCCcHHHHHHHHHHH--Hh--CCCeEEEeCCC-C
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS-A----RPWARICQDTINKGKSGTKVQCLTSASSA--LK--KGKSVFLDRCN-L   88 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~-~----~~~~~Is~D~ir~~~~~~~~~~~~~~~~~--L~--~G~~VIID~tn-~   88 (636)
                      .+. +++.|+||+||||+|+.+++.+ +    ..+..++........ ... .........  +.  ..+.+|||... +
T Consensus        38 ~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~vliiDe~~~l  114 (319)
T 2chq_A           38 IPH-LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGID-VVR-HKIKEFARTAPIGGAPFKIIFLDEADAL  114 (319)
T ss_dssp             CCC-EEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTT-TSS-HHHHHHHHSCCSSSCCCEEEEEETGGGS
T ss_pred             CCe-EEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChH-HHH-HHHHHHHhcCCCCCCCceEEEEeCCCcC
Confidence            344 8999999999999999999875 2    123444432221100 011 111111111  11  12358889864 4


Q ss_pred             CHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 006654           89 EREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI  126 (636)
Q Consensus        89 ~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~  126 (636)
                      .......+..+ ......+.+|...-....+...+..|.
T Consensus       115 ~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~  153 (319)
T 2chq_A          115 TADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC  153 (319)
T ss_dssp             CHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTC
T ss_pred             CHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhC
Confidence            55555556666 554444445444433333344444453

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=95.46  E-value=0.024  Score=61.91  Aligned_cols=76  Identities=22%  Similarity=0.347  Sum_probs=43.1

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHh--CCCeEEEeCCCC-CHHHHHHHH
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK--KGKSVFLDRCNL-EREQRTDFV   97 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~--~G~~VIID~tn~-~~~~R~~l~   97 (636)
                      .-++|.|+||+||||+|+.+++.++.++..++.....   .......+..+.....  .+..++||.... +..+...++
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~---~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL  127 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARYANADVERISAVTSG---VKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFL  127 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCC---HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------CCH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCC---HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHH
Confidence            4589999999999999999999988666666532210   0011122233333332  334588898653 334444555


Q ss_pred             Hh
Q 006654           98 KL   99 (636)
Q Consensus        98 ~l   99 (636)
                      ..
T Consensus       128 ~~  129 (447)
T 3pvs_A          128 PH  129 (447)
T ss_dssp             HH
T ss_pred             HH
Confidence            55

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=95.44  E-value=0.029  Score=58.37  Aligned_cols=29  Identities=14%  Similarity=0.252  Sum_probs=24.7

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ...+..+++.|+||+||||+++.+++.+.
T Consensus        35 ~~~~~~~ll~G~~G~GKT~la~~la~~l~   63 (373)
T 1jr3_A           35 GRIHHAYLFSGTRGVGKTSIARLLAKGLN   63 (373)
T ss_dssp             TCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34456789999999999999999998875

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=95.30  E-value=0.038  Score=57.02  Aligned_cols=38  Identities=18%  Similarity=0.277  Sum_probs=30.1

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhc
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir   57 (636)
                      +.+++++|++|+||||++..|+..+   +.....++.|..+
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r  138 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR  138 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            7889999999999999999988554   4456667777543

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=95.28  E-value=0.13  Score=55.83  Aligned_cols=40  Identities=20%  Similarity=0.261  Sum_probs=32.3

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHc----CCCeEEeehhhhc
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTIN   57 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~----~~~~~~Is~D~ir   57 (636)
                      .+|.+|+++|++|+||||++..|+..+    |.....++.|..+
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r  141 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR  141 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence            467899999999999999999988543    6567778888654

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=95.25  E-value=0.0095  Score=56.80  Aligned_cols=24  Identities=29%  Similarity=0.670  Sum_probs=21.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcC
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      .+.|+|++||||||+.+.++..++
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999997765

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.25  E-value=0.012  Score=59.93  Aligned_cols=102  Identities=13%  Similarity=0.071  Sum_probs=52.7

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC-----CCeEEeehhhhcCCCCCcHHHHHHHHHHHHh------CC--CeEEEeC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTINKGKSGTKVQCLTSASSALK------KG--KSVFLDR   85 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~-----~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~------~G--~~VIID~   85 (636)
                      .+. +++.|+||+||||+|+.+++.+.     ..+..++...     ......+...+.....      .+  +.+|||.
T Consensus        42 ~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe  115 (323)
T 1sxj_B           42 MPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD-----DRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDE  115 (323)
T ss_dssp             CCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS-----CCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEES
T ss_pred             CCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc-----ccChHHHHHHHHHHHhccccCCCCCceEEEEEC
Confidence            345 89999999999999999998752     1133333211     1112222222332220      33  3578898


Q ss_pred             CC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 006654           86 CN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI  126 (636)
Q Consensus        86 tn-~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~  126 (636)
                      .. +.......+..+ .+......+|...-+...+...+..|.
T Consensus       116 ~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~  158 (323)
T 1sxj_B          116 ADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC  158 (323)
T ss_dssp             GGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred             cccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhc
Confidence            64 444455455555 333333344444433333344555554

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.20  E-value=0.011  Score=57.84  Aligned_cols=34  Identities=24%  Similarity=0.400  Sum_probs=27.5

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i   56 (636)
                      ...|+++|++||||||+|..|+++..   ..|+.|..
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~g~---~iIsdDs~   67 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQRGH---RLIADDRV   67 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTTTC---EEEESSEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCC---eEEecchh
Confidence            46789999999999999999998754   45665544

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=95.08  E-value=0.011  Score=57.08  Aligned_cols=26  Identities=23%  Similarity=0.335  Sum_probs=22.9

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +..++.|+|++|||||||++.++...
T Consensus        24 ~G~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           24 TQAITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            45789999999999999999998743

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=95.08  E-value=0.016  Score=64.82  Aligned_cols=36  Identities=28%  Similarity=0.586  Sum_probs=30.0

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehh
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQD   54 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D   54 (636)
                      +...++|+||||+||||+|+.++..++.++..++.+
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~  142 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLG  142 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEec
Confidence            456789999999999999999999988666666543

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=95.04  E-value=0.013  Score=60.56  Aligned_cols=31  Identities=19%  Similarity=0.380  Sum_probs=26.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEee
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARIC   52 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is   52 (636)
                      -++|.|+||+|||++|+.+++.++.++..++
T Consensus        48 ~vll~G~pGtGKT~la~~la~~~~~~~~~i~   78 (331)
T 2r44_A           48 HILLEGVPGLAKTLSVNTLAKTMDLDFHRIQ   78 (331)
T ss_dssp             CEEEESCCCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhCCCeEEEe
Confidence            4789999999999999999999887665554

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=95.03  E-value=0.01  Score=60.53  Aligned_cols=22  Identities=32%  Similarity=0.587  Sum_probs=20.6

Q ss_pred             EEEEccCCCcHHHHHHHHHHHc
Q 006654           23 VIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +++.|+||+||||+|+.+++.+
T Consensus        49 ~ll~G~~G~GKT~la~~l~~~l   70 (327)
T 1iqp_A           49 LLFAGPPGVGKTTAALALAREL   70 (327)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHh
Confidence            8999999999999999999875

>3bl9_A Scavenger mRNA-decapping enzyme DCPS; ligand complex, cytoplasm, hydrolase, nonsense-mediated mRNA decay, nucleus, polymorphism, structural genomics; HET: DD2; 1.80A {Homo sapiens} SCOP: d.13.1.3 d.246.1.1 PDB: 3bl7_A* 3bla_A*

Probab=94.99  E-value=0.014  Score=60.27  Aligned_cols=53  Identities=13%  Similarity=-0.043  Sum_probs=47.2

Q ss_pred             HHHHhcCccCCCCCeEEEcCc----EEEeccCC----CCCcccccccCCCCccchhcccccc
Q 006654          564 LYRTAMYPERHKDDLLEISDD----VVVLNDLY----PKVHPSDNLPPGTLLCICLSSINKC  617 (636)
Q Consensus       564 ~~~~~~~p~~~~~~~~~~~~~----~~~~~d~~----pk~~~~~l~~~~~~~~~~~~~~~~~  617 (636)
                      +++++.|++.. +.|+|-|++    +||++|+.    |.+.-|+|+||+...+.||.|+++.
T Consensus       140 v~nIl~~~~E~-e~ilyeD~d~~~gFvllpDlkWd~~~~~~lhlLaI~~~~~I~SlrdL~~~  200 (301)
T 3bl9_A          140 VYNILDKKAEA-DRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPE  200 (301)
T ss_dssp             HHHHHTTSSSG-GGCCEEECCTTTCEEEEECTTCCSSCSTTCEEEEEESSSCCCSGGGCCGG
T ss_pred             HHHHhhCCCcc-ccEEEecCCCCcCEEEeccCccCCCcccccEEEEEecccCCCChHHCCHh
Confidence            78899998766 468888888    99999998    8899999999999999999999875

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=94.93  E-value=0.038  Score=60.71  Aligned_cols=152  Identities=9%  Similarity=-0.013  Sum_probs=77.1

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCC-CC--cHHHHHHHHHHHHhCCCeEEEeCCCCCHHHH
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK-SG--TKVQCLTSASSALKKGKSVFLDRCNLEREQR   93 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~-~~--~~~~~~~~~~~~L~~G~~VIID~tn~~~~~R   93 (636)
                      +..+++|||+||+|+|   +.++|.+.++..|...-+ .-|.+. .|  ..+.-...+.+.+++|+.+|+|-      ..
T Consensus       221 ~~~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s~~T-RpR~gE~dG~~Y~FTs~~~V~~vl~~Gk~~iLdI------d~  290 (468)
T 3shw_A          221 AGFLRPVTIFGPIADV---AREKLAREEPDIYQIAKS-EPRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDV------TP  290 (468)
T ss_dssp             CSSCCCEEEESTTHHH---HHHHHHHHCTTTEEECCC-BC----------CBCCHHHHHHHHTTTCEEEECC------CH
T ss_pred             CCCCCEEEEECCCHHH---HHHHHHHhCCCceeeecC-CCCCcccccccCCcccHHHHHHHHHCCCeEEEEe------CH
Confidence            3467899999999999   999999887643432111 011110 00  00012367788899999999998      22


Q ss_pred             HHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhh-c-CCCccCCccEEEEeCCh--hH
Q 006654           94 TDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK-E-LPKLSEGFSRITLCQNE--ND  168 (636)
Q Consensus        94 ~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~f-e-~P~~~Egfd~Viii~~~--~~  168 (636)
                      +....+ ...-.++.++....+.++|.+| ..|...       ..++.++++.+.- + +-.+...|+.+++.++.  ..
T Consensus       291 qg~~~l~~~~~~p~~IFI~PPS~e~L~~~-~~rl~~-------~see~~~r~~~~a~~~e~~~~~~fD~vIvNddl~d~a  362 (468)
T 3shw_A          291 NAVDRLNYAQWYPIVVFLNPDSKQGVKTM-RMRLCP-------ESRKSARKLYERSHKLRKNNHHLFTTTINLNSMNDGW  362 (468)
T ss_dssp             HHHHHHHHTTCCCEEEEEECSCHHHHHHH-HHHHCT-------TCCCCHHHHHHHHHHHHHHHGGGCSEEEECBTTBCHH
T ss_pred             HHHHHHHhcCCCCEEEEEeCcCHHHHHHH-HhccCC-------CCHHHHHHHHHHHHHHHHhhhccCCEEEECCCcHHHH
Confidence            333333 2222334444445566777654 333221       0112333333321 1 11124568888665544  23


Q ss_pred             HHHHHHHhc-cCCCCcccC
Q 006654          169 VQAALDTYS-GLGPLDTLP  186 (636)
Q Consensus       169 vdaiv~~~~-~Lgpfd~~p  186 (636)
                      .+.+..... +-....|+|
T Consensus       363 ~~~L~~ii~~~~~~~~WvP  381 (468)
T 3shw_A          363 YGALKEAIQQQQNQLVWVS  381 (468)
T ss_dssp             HHHHHHHHHHHHTSCEEEE
T ss_pred             HHHHHHHHHHhcCCCEEeC
Confidence            444444322 223334566

>1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.83A {Mus musculus} SCOP: d.13.1.3 d.246.1.1 PDB: 1xmm_B* 1xml_B 1st0_B* 1st4_B*

Probab=94.92  E-value=0.016  Score=60.78  Aligned_cols=53  Identities=13%  Similarity=-0.043  Sum_probs=44.2

Q ss_pred             HHHHhcCccCCCCCeEEEcCc----EEEeccCC----CCCcccccccCCCCccchhcccccc
Q 006654          564 LYRTAMYPERHKDDLLEISDD----VVVLNDLY----PKVHPSDNLPPGTLLCICLSSINKC  617 (636)
Q Consensus       564 ~~~~~~~p~~~~~~~~~~~~~----~~~~~d~~----pk~~~~~l~~~~~~~~~~~~~~~~~  617 (636)
                      +++++.+++.. +.|||-|++    +||++|+.    |.+.-|+|+||+...|.||.|+++.
T Consensus       187 v~nIl~~~~E~-e~vlyeD~d~~~gFvllpDlKWd~~~~~~lhlLaI~~~~dI~SlRdL~~~  247 (350)
T 1vlr_A          187 VYNILDKKAEA-DRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPE  247 (350)
T ss_dssp             HHHHHTC-----CCCSEEECCTTTCEEEEECTTCCSSCSTTCEEEEEESSSCCCSGGGCCGG
T ss_pred             HHHHhhCCCcc-ccEEEecCCCCCCeEEeccCccCCCccccceEEEEecccCCCChHHCCHh
Confidence            78899998766 468888888    99999998    8899999999999999999999875

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.92  E-value=0.045  Score=56.39  Aligned_cols=22  Identities=23%  Similarity=0.537  Sum_probs=20.4

Q ss_pred             EEEEccCCCcHHHHHHHHHHHc
Q 006654           23 VIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      ++|.|+||+||||+++.+++.+
T Consensus        61 ~ll~G~~G~GKT~la~~la~~l   82 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKEL   82 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8899999999999999999874

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=94.91  E-value=0.061  Score=57.08  Aligned_cols=36  Identities=25%  Similarity=0.310  Sum_probs=27.6

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehh
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD   54 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D   54 (636)
                      +..++.+.|+||||||||+..++...   +.....|+..
T Consensus        60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E   98 (356)
T 3hr8_A           60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE   98 (356)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence            45799999999999999999988653   3344556643

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=94.90  E-value=0.02  Score=58.24  Aligned_cols=36  Identities=17%  Similarity=0.253  Sum_probs=27.7

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhh
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTI   56 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~i   56 (636)
                      ..++|.|+||+||||+|+.+++.+.   .++..++...+
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~   86 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY   86 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGC
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccc
Confidence            4789999999999999999998763   23555664433

>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1

Probab=94.87  E-value=0.046  Score=57.67  Aligned_cols=28  Identities=25%  Similarity=0.288  Sum_probs=24.4

Q ss_pred             CccEEEEEEccCCCcHHHHH-HHHHHHcC
Q 006654           18 WKQILVIMVGAPGSGKSTFC-EHVMRSSA   45 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlA-r~Lak~~~   45 (636)
                      .+...|++-|+-||||||++ +.|++.++
T Consensus        10 ~~~~~I~iEG~~GaGKTT~~~~~L~~~l~   38 (341)
T 1osn_A           10 MGVLRIYLDGAYGIGKTTAAEEFLHHFAI   38 (341)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred             CCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            34678999999999999999 99988765

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.82  E-value=0.017  Score=64.04  Aligned_cols=35  Identities=20%  Similarity=0.192  Sum_probs=29.1

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ   53 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~   53 (636)
                      .+..++|.|+||+||||+|+.+++.++..+..++.
T Consensus        76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~  110 (516)
T 1sxj_A           76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNA  110 (516)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence            34678999999999999999999999855555554

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=94.81  E-value=0.014  Score=56.17  Aligned_cols=25  Identities=28%  Similarity=0.720  Sum_probs=21.9

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      +..+++++|+||||||||++.++..
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           22 QGFFIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            4568999999999999999998854

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=94.80  E-value=0.013  Score=57.80  Aligned_cols=27  Identities=22%  Similarity=0.338  Sum_probs=23.5

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      +...+++.||||+||||+|..+++.+.
T Consensus        57 kkn~ili~GPPGtGKTt~a~ala~~l~   83 (212)
T 1tue_A           57 KKNCLVFCGPANTGKSYFGMSFIHFIQ   83 (212)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHHhC
Confidence            345689999999999999999998865

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=94.80  E-value=0.016  Score=55.21  Aligned_cols=25  Identities=28%  Similarity=0.305  Sum_probs=22.0

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      ..++.++|++||||||++.+|++.+
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l   28 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAA   28 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhh
Confidence            4578999999999999999998764

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=94.80  E-value=0.063  Score=59.39  Aligned_cols=27  Identities=30%  Similarity=0.460  Sum_probs=23.8

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      .++.+++|+|++||||||+++.|+..+
T Consensus       291 ~~GeVI~LVGpNGSGKTTLl~~LAgll  317 (503)
T 2yhs_A          291 KAPFVILMVGVNGVGKTTTIGKLARQF  317 (503)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence            467899999999999999999998654

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=94.67  E-value=0.062  Score=55.97  Aligned_cols=111  Identities=12%  Similarity=0.136  Sum_probs=60.4

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEE---------ee--------hhhhc-CC----CCCcHHHHHHHHHH
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWAR---------IC--------QDTIN-KG----KSGTKVQCLTSASS   73 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~---------Is--------~D~ir-~~----~~~~~~~~~~~~~~   73 (636)
                      ....+..+++.|+||+||||+|+.+++.+......         .+        .|.+. ..    .....++ ++.+.+
T Consensus        20 ~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~-ir~l~~   98 (334)
T 1a5t_A           20 AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDA-VREVTE   98 (334)
T ss_dssp             TTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHH-HHHHHH
T ss_pred             cCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHH-HHHHHH
Confidence            44557789999999999999999999886521100         00        11111 11    1112222 233333


Q ss_pred             HHh------CCCeEEEeCCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           74 ALK------KGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        74 ~L~------~G~~VIID~tn-~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      .+.      ..+-+|||... ++......+++. .+......+|.+.-..+.+...+..|..
T Consensus        99 ~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~  160 (334)
T 1a5t_A           99 KLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCR  160 (334)
T ss_dssp             HTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred             HHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcce
Confidence            432      12357888854 555555667676 6554444455554444445555666654

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=94.62  E-value=0.02  Score=60.01  Aligned_cols=40  Identities=25%  Similarity=0.252  Sum_probs=29.6

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhc
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTIN   57 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir   57 (636)
                      .++.++.|+|++||||||+++.|+..+.   ........|.++
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r  169 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFR  169 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccc
Confidence            5689999999999999999999886542   233444555543

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=94.61  E-value=0.51  Score=54.53  Aligned_cols=98  Identities=14%  Similarity=0.161  Sum_probs=54.4

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCe---------------------EEe-ehhhhc----CCCCCcH-------
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPW---------------------ARI-CQDTIN----KGKSGTK-------   64 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~---------------------~~I-s~D~ir----~~~~~~~-------   64 (636)
                      .++++|+|+||   ||+|+.++|.+.++..+                     ..+ +.+.+.    ++.+..+       
T Consensus       529 ~~~r~vvl~GP---~K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~flE~~~~~g~~  605 (721)
T 2xkx_A          529 HYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHL  605 (721)
T ss_pred             CCCCEEEEECC---CHHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHHHHHHhcCCceEEEEECCcc
Confidence            35678999998   39999999998764111                     112 222221    1111000       


Q ss_pred             -HHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCC-HHHHHHHHHhcc
Q 006654           65 -VQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLP-AKLCISRSVKRI  126 (636)
Q Consensus        65 -~~~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p-~e~l~~R~~~R~  126 (636)
                       -.-...+.+.+++|+.+|+|.      .+.....+ ...-++ .+||+.+| .++|.+ +..|.
T Consensus       606 YGt~~~~v~~~~~~g~~~ildi------~~~~~~~l~~~~~~p-~~ifi~pps~~~L~~-l~~R~  662 (721)
T 2xkx_A          606 YGTSVQSVREVAEQGKHCILDV------SANAVRRLQAAHLHP-IAIFIRPRSLENVLE-INKRI  662 (721)
T ss_pred             ceeeHHHHHHHHHCCCcEEEeC------CHHHHHHHHhcccCC-EEEEEeCCcHHHHHH-HhccC
Confidence             011245777889999999998      23333333 222233 46667655 455555 65554

>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} SCOP: d.13.1.0 PDB: 3n1t_A*

Probab=94.57  E-value=0.022  Score=50.70  Aligned_cols=31  Identities=23%  Similarity=0.330  Sum_probs=29.0

Q ss_pred             CCeEEEcCcEEEeccCCCCCcccccccCCCC
Q 006654          576 DDLLEISDDVVVLNDLYPKVHPSDNLPPGTL  606 (636)
Q Consensus       576 ~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~~  606 (636)
                      ..++|-||.++++.|.||.+..|+||+||.-
T Consensus        17 ~~iv~ede~~~af~d~~P~~pgH~LViPk~H   47 (119)
T 3n1s_A           17 SDIVYQDDLVTAFRDISPQAPTHILIIPNIL   47 (119)
T ss_dssp             CCEEEECSSEEEEECSSCSSSEEEEEEESSC
T ss_pred             CCEEEECCCEEEEECCCCCCCCeEEEEehhH
Confidence            4599999999999999999999999999975

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=94.56  E-value=0.02  Score=54.57  Aligned_cols=26  Identities=19%  Similarity=0.318  Sum_probs=22.5

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +..+++++|++||||||+.+.|...+
T Consensus         5 ~~~~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            5 MIPLLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence            45678999999999999999998754

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=94.56  E-value=0.019  Score=61.41  Aligned_cols=28  Identities=21%  Similarity=0.275  Sum_probs=24.7

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      +++.+++++|+|||||||+++.|+..++
T Consensus       167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~  194 (377)
T 1svm_A          167 PKKRYWLFKGPIDSGKTTLAAALLELCG  194 (377)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            4566899999999999999999998765

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=94.55  E-value=0.11  Score=54.70  Aligned_cols=35  Identities=29%  Similarity=0.329  Sum_probs=26.7

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH---cCCCeEEeeh
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQ   53 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~---~~~~~~~Is~   53 (636)
                      +..++++.|.||+|||||+..++..   .+.++..++.
T Consensus        45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl   82 (338)
T 4a1f_A           45 KGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL   82 (338)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence            4569999999999999999998765   3334455553

>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}

Probab=94.52  E-value=0.073  Score=54.73  Aligned_cols=107  Identities=18%  Similarity=0.239  Sum_probs=71.2

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEe-eh----hhhcCCCCCcHHHHHHHHHHHH-hCCCeEEEeCCCCCH-
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARI-CQ----DTINKGKSGTKVQCLTSASSAL-KKGKSVFLDRCNLER-   90 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~I-s~----D~ir~~~~~~~~~~~~~~~~~L-~~G~~VIID~tn~~~-   90 (636)
                      ..+.+|++-|.-||||++..+.|.+.+....+.+ ..    +.-...+      .+-+....| ..|.-+|+|..-+.. 
T Consensus        73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~~Pt~eE~~~~------ylwR~~~~lP~~G~I~IFdRSwY~~v  146 (289)
T 3rhf_A           73 PKRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFKAPTDEEKSHD------FLWRIEKQVPAAGMVGVFDRSQYEDV  146 (289)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECCSCCHHHHTSC------TTHHHHTTCCCTTCEEEEESCGGGGG
T ss_pred             CCcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECCCCChhhhcCC------HHHHHHHhCCCCCeEEEEeCchhhhH
Confidence            4689999999999999999999999887433333 21    1111111      111222233 678889999844333 


Q ss_pred             -----------HH-------HHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 006654           91 -----------EQ-------RTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEG  130 (636)
Q Consensus        91 -----------~~-------R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~  130 (636)
                                 .+       -..|..+ ...|+.+.-++|.++.++..+|+.+|...+.
T Consensus       147 lverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R~~dP~  205 (289)
T 3rhf_A          147 LIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIARLDDPS  205 (289)
T ss_dssp             THHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHHHHCGG
T ss_pred             hHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHHhcCCc
Confidence                       11       1123333 4678888889999999999999999987654

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=94.48  E-value=0.023  Score=58.89  Aligned_cols=27  Identities=26%  Similarity=0.438  Sum_probs=23.8

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      .++.++.|+|++||||||+++.|+..+
T Consensus        98 ~~g~vi~lvG~nGsGKTTll~~Lag~l  124 (302)
T 3b9q_A           98 RKPAVIMIVGVNGGGKTTSLGKLAHRL  124 (302)
T ss_dssp             SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999998654

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=94.48  E-value=0.046  Score=64.39  Aligned_cols=67  Identities=15%  Similarity=0.272  Sum_probs=37.0

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHc----------CCCeEEeehhhhcC--CCCCcHHHHHHHHHHHHhCC-C--eEEEeC
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSS----------ARPWARICQDTINK--GKSGTKVQCLTSASSALKKG-K--SVFLDR   85 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~----------~~~~~~Is~D~ir~--~~~~~~~~~~~~~~~~L~~G-~--~VIID~   85 (636)
                      .-++|+|+||+||||+++.++...          +.++..++...+..  ...+.....+..+...+... .  .++||.
T Consensus       192 ~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDE  271 (854)
T 1qvr_A          192 NNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDE  271 (854)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECC
T ss_pred             CceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence            346899999999999999999876          44455555444432  22334444344444444332 2  356677


Q ss_pred             CC
Q 006654           86 CN   87 (636)
Q Consensus        86 tn   87 (636)
                      .+
T Consensus       272 i~  273 (854)
T 1qvr_A          272 LH  273 (854)
T ss_dssp             C-
T ss_pred             HH
Confidence            54

>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile}

Probab=94.48  E-value=0.024  Score=50.27  Aligned_cols=31  Identities=23%  Similarity=0.191  Sum_probs=28.9

Q ss_pred             CCeEEEcCcEEEeccCCCCCcccccccCCCC
Q 006654          576 DDLLEISDDVVVLNDLYPKVHPSDNLPPGTL  606 (636)
Q Consensus       576 ~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~~  606 (636)
                      ..++|-||.++++.|.||.+..|+||+||.-
T Consensus        18 ~~iv~e~e~~~af~d~~P~~pgH~LViPk~H   48 (119)
T 4egu_A           18 STKVYEDDRVLAFNDLNPVAPYHILVVPKKH   48 (119)
T ss_dssp             CCEEEECSSEEEEECSSCSSSEEEEEEESSC
T ss_pred             CCEEEECCCEEEEECCCCCCCceEEEEechh
Confidence            4599999999999999999999999999865

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=94.48  E-value=0.027  Score=52.75  Aligned_cols=28  Identities=29%  Similarity=0.475  Sum_probs=24.2

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      .+..++.|+|+.|||||||.+.++..++
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l~   58 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence            4556899999999999999999998763

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=94.45  E-value=0.021  Score=59.22  Aligned_cols=26  Identities=35%  Similarity=0.443  Sum_probs=23.3

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      ++.++.|+|++||||||+++.|+..+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll  126 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYY  126 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            57899999999999999999998654

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=94.44  E-value=0.02  Score=60.80  Aligned_cols=27  Identities=44%  Similarity=0.706  Sum_probs=23.7

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ....|+|+|+|||||||+++.|++.++
T Consensus        23 ~~~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A           23 YRVCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            345688999999999999999998876

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=94.41  E-value=0.018  Score=56.21  Aligned_cols=25  Identities=20%  Similarity=0.396  Sum_probs=22.5

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      +..++.|+|+||||||||+..++..
T Consensus        23 ~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           23 TGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            4568999999999999999999874

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=94.40  E-value=0.029  Score=54.56  Aligned_cols=26  Identities=27%  Similarity=0.433  Sum_probs=21.7

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      .++.++++.|+||||||++|..++..
T Consensus         3 ~~~mi~l~tG~pGsGKT~~a~~~~~~   28 (199)
T 2r2a_A            3 AMAEICLITGTPGSGKTLKMVSMMAN   28 (199)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cceeEEEEEeCCCCCHHHHHHHHHHH
Confidence            46778999999999999999987544

>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} SCOP: d.13.1.1 PDB: 3llj_A* 1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A* 3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A

Probab=94.38  E-value=0.025  Score=50.81  Aligned_cols=31  Identities=13%  Similarity=0.222  Sum_probs=29.0

Q ss_pred             CCeEEEcCcEEEeccCCCCCcccccccCCCC
Q 006654          576 DDLLEISDDVVVLNDLYPKVHPSDNLPPGTL  606 (636)
Q Consensus       576 ~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~~  606 (636)
                      ..++|-||.++++.|.||.+..|+||+||.-
T Consensus        29 ~~iv~e~e~~~af~d~~P~~pgH~LViPk~H   59 (126)
T 3o1c_A           29 AKIIFEDDQALAFHDISPQAPTHFLVIPKKH   59 (126)
T ss_dssp             CCEEEECSSEEEEECSSCSSSEEEEEEESSC
T ss_pred             CCEEEECCCEEEEECCCCCCCceEEEEechH
Confidence            4699999999999999999999999999865

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=94.37  E-value=0.18  Score=54.67  Aligned_cols=39  Identities=28%  Similarity=0.296  Sum_probs=30.1

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir   57 (636)
                      ++.+|+++|++||||||++..|+..+   +.....++.|..+
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r  138 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR  138 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence            67889999999999999999998654   3345566766543

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=94.35  E-value=0.18  Score=53.34  Aligned_cols=125  Identities=15%  Similarity=0.093  Sum_probs=65.3

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCC--CeEEee-hhhhcCC-CC-----Cc----H----H--HHHHHHHHHHhCCCe
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSAR--PWARIC-QDTINKG-KS-----GT----K----V--QCLTSASSALKKGKS   80 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~--~~~~Is-~D~ir~~-~~-----~~----~----~--~~~~~~~~~L~~G~~   80 (636)
                      ..+++++|++||||||+.+.|...+..  ..+.++ .+.+... ..     ..    .    .  .....+...+.....
T Consensus       175 G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd  254 (361)
T 2gza_A          175 ERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPT  254 (361)
T ss_dssp             TCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCC
Confidence            457899999999999999999977652  233343 1222110 00     00    0    0  122445555665545


Q ss_pred             EEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHh
Q 006654           81 VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ  146 (636)
Q Consensus        81 VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~  146 (636)
                      +++-+..........+..+ ..+...+.... ..+.....+|+........ ....++.++++.+..
T Consensus       255 ~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H-~~~~~~~~~Rl~~l~~~~~-~~~~~~~~~i~~~l~  319 (361)
T 2gza_A          255 RILLAELRGGEAYDFINVAASGHGGSITSCH-AGSCELTFERLALMVLQNR-QGRQLPYEIIRRLLY  319 (361)
T ss_dssp             EEEESCCCSTHHHHHHHHHHTTCCSCEEEEE-CSSHHHHHHHHHHHHTTST-TGGGSCHHHHHHHHH
T ss_pred             EEEEcCchHHHHHHHHHHHhcCCCeEEEEEC-CCCHHHHHHHHHHHHhccc-cccCCCHHHHHHHHH
Confidence            5544434444444434444 44443343333 2456777888886654211 001466666666554

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=94.31  E-value=0.029  Score=61.55  Aligned_cols=24  Identities=25%  Similarity=0.526  Sum_probs=21.5

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHc
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      .-++|+|+||+|||++|+.++...
T Consensus       202 ~~~LL~G~pG~GKT~la~~la~~l  225 (468)
T 3pxg_A          202 NNPVLIGEPGVGKTAIAEGLAQQI  225 (468)
T ss_dssp             CEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHHHH
Confidence            346899999999999999999885

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=94.26  E-value=0.015  Score=55.19  Aligned_cols=26  Identities=27%  Similarity=0.479  Sum_probs=22.0

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ..++.++|++||||||+++.|...+.
T Consensus         2 ~~~v~IvG~SGsGKSTL~~~L~~~~~   27 (171)
T 2f1r_A            2 SLILSIVGTSDSGKTTLITRMMPILR   27 (171)
T ss_dssp             -CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhh
Confidence            35789999999999999999987653

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=94.23  E-value=0.023  Score=55.39  Aligned_cols=25  Identities=28%  Similarity=0.739  Sum_probs=21.7

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      +..+++++|+||||||||+.+++..
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~~~~~   46 (247)
T 2dr3_A           22 ERNVVLLSGGPGTGKTIFSQQFLWN   46 (247)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4568999999999999999988754

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=94.21  E-value=0.023  Score=57.83  Aligned_cols=25  Identities=24%  Similarity=0.396  Sum_probs=22.0

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      +..+++|+|+||||||||++.++..
T Consensus        34 ~G~~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           34 GGEVIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            4568999999999999999998754

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=94.15  E-value=0.079  Score=56.12  Aligned_cols=36  Identities=25%  Similarity=0.326  Sum_probs=28.0

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehh
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD   54 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D   54 (636)
                      +..++++.|+|||||||||.+++...   +..+..++..
T Consensus        62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E  100 (356)
T 1u94_A           62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE  100 (356)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            45689999999999999999988643   3456667753

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=94.14  E-value=0.038  Score=55.13  Aligned_cols=34  Identities=21%  Similarity=0.401  Sum_probs=27.3

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeeh
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQ   53 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~   53 (636)
                      +.-++|.|+||+|||++|+.++...+   .++..++.
T Consensus        29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~   65 (265)
T 2bjv_A           29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC   65 (265)
T ss_dssp             CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEG
T ss_pred             CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEec
Confidence            34578999999999999999998765   35666764

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=94.09  E-value=0.066  Score=56.99  Aligned_cols=36  Identities=17%  Similarity=0.253  Sum_probs=28.0

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehh
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD   54 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D   54 (636)
                      ...++++.|+||+||||||..++...   +.++..++.+
T Consensus        73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E  111 (366)
T 1xp8_A           73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE  111 (366)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence            45688999999999999999988653   3456667754

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=94.04  E-value=0.048  Score=57.45  Aligned_cols=38  Identities=29%  Similarity=0.233  Sum_probs=29.5

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehh
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD   54 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D   54 (636)
                      ..++.+|+++|.||+||||++.+|+..+   +.....++.|
T Consensus        76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D  116 (355)
T 3p32_A           76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD  116 (355)
T ss_dssp             CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence            3466789999999999999999998664   4445566655

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=94.03  E-value=0.037  Score=57.81  Aligned_cols=39  Identities=21%  Similarity=0.235  Sum_probs=30.7

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhh
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI   56 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~i   56 (636)
                      .++.+|+++|++|+||||++..|+..+   +.....++.|..
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~  144 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF  144 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence            467899999999999999999988543   345566777754

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=94.02  E-value=0.032  Score=59.35  Aligned_cols=27  Identities=26%  Similarity=0.438  Sum_probs=23.9

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      .++.++.|+|++||||||+++.|+..+
T Consensus       155 ~~g~vi~lvG~nGsGKTTll~~Lag~l  181 (359)
T 2og2_A          155 RKPAVIMIVGVNGGGKTTSLGKLAHRL  181 (359)
T ss_dssp             SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence            467899999999999999999998654

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=94.01  E-value=0.051  Score=53.76  Aligned_cols=38  Identities=32%  Similarity=0.407  Sum_probs=29.7

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHc--CCCeEEeehhh
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSS--ARPWARICQDT   55 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~--~~~~~~Is~D~   55 (636)
                      .++.++++.|.+|+||||++..|+..+  +.....++.|.
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~   51 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDT   51 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCS
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            356789999999999999999998654  44566677653

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=93.90  E-value=0.036  Score=56.07  Aligned_cols=27  Identities=33%  Similarity=0.427  Sum_probs=23.1

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      .+..+++++|++||||||+.+.++..+
T Consensus        23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           23 RKMGLILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence            455789999999999999999988654

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=93.89  E-value=0.036  Score=52.42  Aligned_cols=26  Identities=27%  Similarity=0.501  Sum_probs=22.3

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      ....|+|+|++|||||||.+.+....
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCC
Confidence            34678999999999999999998653

>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} SCOP: d.13.1.0 PDB: 3omf_A* 3oxk_A*

Probab=93.89  E-value=0.037  Score=48.89  Aligned_cols=31  Identities=13%  Similarity=0.201  Sum_probs=28.9

Q ss_pred             CCeEEEcCcEEEeccCCCCCcccccccCCCC
Q 006654          576 DDLLEISDDVVVLNDLYPKVHPSDNLPPGTL  606 (636)
Q Consensus       576 ~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~~  606 (636)
                      ..++|-||.++++.|.||.+..|+||+||.-
T Consensus        21 ~~iv~e~~~~~af~d~~P~~pgH~LViPk~H   51 (117)
T 3oj7_A           21 STIVYEDDEIFAFKDINPIAPIHILVIPKQH   51 (117)
T ss_dssp             CCEEEECSSEEEEECSSCSSSEEEEEEESSC
T ss_pred             CCEEEECCcEEEEECCCCCCCceEEEEechH
Confidence            4599999999999999999999999999865

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=93.88  E-value=0.029  Score=58.70  Aligned_cols=28  Identities=21%  Similarity=0.184  Sum_probs=24.7

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      ...|..++|.|+||+|||++++.+++.+
T Consensus        42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           42 SSQNKLFYITNADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             TTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3467778999999999999999999876

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=93.87  E-value=0.092  Score=60.88  Aligned_cols=76  Identities=18%  Similarity=0.185  Sum_probs=46.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCC-CCHHHHHHHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN-LEREQRTDFV   97 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn-~~~~~R~~l~   97 (636)
                      -++|.|+||+|||++|+.+++.+   +.++..++...+..........+...+.  ...+..+++|... +.......+.
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~~l~~~~~--~~~~~vl~lDEi~~~~~~~~~~Ll  600 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLTEKVR--RKPYSVVLLDAIEKAHPDVFNILL  600 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---CHHHHH--HCSSSEEEEECGGGSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccchhhHHHH--hCCCeEEEEeCccccCHHHHHHHH
Confidence            58999999999999999999886   3567888876666544333222212211  1234467888754 3334444444


Q ss_pred             Hh
Q 006654           98 KL   99 (636)
Q Consensus        98 ~l   99 (636)
                      .+
T Consensus       601 ~~  602 (758)
T 3pxi_A          601 QV  602 (758)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=93.87  E-value=0.031  Score=58.12  Aligned_cols=26  Identities=27%  Similarity=0.617  Sum_probs=23.0

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +..++.|+|++|||||||++.|+..+
T Consensus       125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          125 KKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            45678999999999999999998765

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=93.83  E-value=0.12  Score=54.39  Aligned_cols=36  Identities=22%  Similarity=0.265  Sum_probs=27.7

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehh
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD   54 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D   54 (636)
                      +..++++.|+|||||||||.+++...   +.....++.+
T Consensus        60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E   98 (349)
T 2zr9_A           60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE   98 (349)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence            45689999999999999999988543   3345566654

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=93.78  E-value=0.037  Score=53.08  Aligned_cols=33  Identities=24%  Similarity=0.486  Sum_probs=26.6

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i   56 (636)
                      .-|++.|++|+||||+|..|.++ |  +..++.|.+
T Consensus        17 ~gvli~G~SGaGKStlal~L~~r-G--~~lvaDD~v   49 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDR-G--HQLVCDDVI   49 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHT-T--CEEEESSEE
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc-C--CeEecCCEE
Confidence            34789999999999999999985 4  566766654

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=93.78  E-value=0.096  Score=60.58  Aligned_cols=70  Identities=14%  Similarity=0.201  Sum_probs=40.8

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc----------CCCeEEeehhhhc--CCCCCcHHHHHHHHHHHHhC--CCeEEEe
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS----------ARPWARICQDTIN--KGKSGTKVQCLTSASSALKK--GKSVFLD   84 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~----------~~~~~~Is~D~ir--~~~~~~~~~~~~~~~~~L~~--G~~VIID   84 (636)
                      .+.-++|+|+||+||||+++.++...          +..+..++...+.  ....+.....+..+...+..  +..++||
T Consensus       206 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~ID  285 (758)
T 1r6b_X          206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFID  285 (758)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEET
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEe
Confidence            34457899999999999999999875          2112222222222  12344555445555555544  3346788


Q ss_pred             CCCC
Q 006654           85 RCNL   88 (636)
Q Consensus        85 ~tn~   88 (636)
                      ..+.
T Consensus       286 Ei~~  289 (758)
T 1r6b_X          286 EIHT  289 (758)
T ss_dssp             TTTT
T ss_pred             chHH
Confidence            8653

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=93.77  E-value=0.044  Score=53.63  Aligned_cols=102  Identities=10%  Similarity=0.051  Sum_probs=59.2

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCC-CeEEeeh-hhhcC------CCC-----------CcHH-HHH---HH----
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR-PWARICQ-DTINK------GKS-----------GTKV-QCL---TS----   70 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~-~~~~Is~-D~ir~------~~~-----------~~~~-~~~---~~----   70 (636)
                      .++.+|+++|.|||||+|+|+.+.+.++. .+..++. |.++.      +..           ..+. .+.   ..    
T Consensus         9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~~   88 (202)
T 3ch4_B            9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQA   88 (202)
T ss_dssp             CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHhc
Confidence            35679999999999999999999887752 2444542 43431      000           0011 110   11    


Q ss_pred             -----HHHHHh--CCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHH
Q 006654           71 -----ASSALK--KGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRS  122 (636)
Q Consensus        71 -----~~~~L~--~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~  122 (636)
                           +...+.  ....||||+ -+.......+...  .+..+.+|.+..+.++-.+|.
T Consensus        89 d~~~~~~~~~~~~~~~~vII~d-vR~~~Ev~~fr~~--~g~~~~iirI~as~~~R~~Rg  144 (202)
T 3ch4_B           89 DPGFFCRKIVEGISQPIWLVSD-TRRVSDIQWFREA--YGAVTQTVRVVALEQSRQQRG  144 (202)
T ss_dssp             CTTTTHHHHSBTCCCSEEEECC-CCSHHHHHHHHHH--HGGGEEEEEEEECHHHHHHTT
T ss_pred             CchHHHHHHHHhcCCCcEEEeC-CCCHHHHHHHHHh--CCCcEEEEEEECCHHHHHHHh
Confidence                 111111  113689999 4455554444333  233467889999999988883

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=93.75  E-value=0.16  Score=56.20  Aligned_cols=107  Identities=12%  Similarity=0.059  Sum_probs=64.7

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcCCC-eEEeeh----hhhcCCCCCcHHHHHHHHHHHH-hCCCeEEEeCCC---
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARP-WARICQ----DTINKGKSGTKVQCLTSASSAL-KKGKSVFLDRCN---   87 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~-~~~Is~----D~ir~~~~~~~~~~~~~~~~~L-~~G~~VIID~tn---   87 (636)
                      ...+.+|++-|.-||||+|..+.|.+.+... +.++..    +.-...+.      +....+.| ..|.-+|.|..-   
T Consensus        40 ~~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt~~E~~~~y------l~R~~~~lP~~G~IvIfdRSwYs~  113 (500)
T 3czp_A           40 ARFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSDEELERPP------QWRFWRRLPPKGRTGIFFGNWYSQ  113 (500)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCCHHHHTSCT------THHHHHHCCCTTCEEEEESCHHHH
T ss_pred             CCCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhccCCh------hhhHHHhCCCCCeEEEEeCchhhH
Confidence            3578999999999999999999999988733 222221    11111111      11122223 578889999832   


Q ss_pred             ---------CCHHH---HHH----HHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccccc
Q 006654           88 ---------LEREQ---RTD----FVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHE  129 (636)
Q Consensus        88 ---------~~~~~---R~~----l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~  129 (636)
                               ....+   +..    |..+ ...|+.+..++|+++.++..+|+..|...+
T Consensus       114 ~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~~R~~~p  172 (500)
T 3czp_A          114 MLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKALEKDP  172 (500)
T ss_dssp             HHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC-------
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHHHHhcCC
Confidence                     22221   111    2233 467888899999999999999999997754

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=93.73  E-value=0.036  Score=52.94  Aligned_cols=24  Identities=25%  Similarity=0.196  Sum_probs=20.3

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHc
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      .++++.|+|||||||++-+++.++
T Consensus         4 ~i~vi~G~~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A            4 KLTVITGPMYSGKTTELLSFVEIY   27 (184)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            578999999999999997776553

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=93.66  E-value=0.2  Score=51.74  Aligned_cols=101  Identities=14%  Similarity=0.112  Sum_probs=54.1

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcC------CCeEEeehhhhcCCCCCcHHHHHHHHHHHHh------CCCeEEEeCCC
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSA------RPWARICQDTINKGKSGTKVQCLTSASSALK------KGKSVFLDRCN   87 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~------~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~------~G~~VIID~tn   87 (636)
                      +..+++.|+||+||||+|+.+++..+      ..+..++.+    +....-+++ +.+.+.+.      ..+-+|||...
T Consensus        18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~----~~~~~id~i-r~li~~~~~~p~~~~~kvviIdead   92 (305)
T 2gno_A           18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE----GENIGIDDI-RTIKDFLNYSPELYTRKYVIVHDCE   92 (305)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS----SSCBCHHHH-HHHHHHHTSCCSSSSSEEEEETTGG
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC----cCCCCHHHH-HHHHHHHhhccccCCceEEEeccHH
Confidence            55789999999999999999998632      123334321    111122222 22333332      12357888854


Q ss_pred             -CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhc
Q 006654           88 -LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKR  125 (636)
Q Consensus        88 -~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R  125 (636)
                       ++......+++. .+......+|........+..-+..|
T Consensus        93 ~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR  132 (305)
T 2gno_A           93 RMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR  132 (305)
T ss_dssp             GBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT
T ss_pred             HhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce
Confidence             555666666666 55443444444433322333334444

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=93.57  E-value=0.031  Score=55.55  Aligned_cols=26  Identities=31%  Similarity=0.391  Sum_probs=22.1

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +..++.|+|++||||||+.+.++...
T Consensus        30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           30 EGEFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            45678999999999999999887543

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=93.52  E-value=0.041  Score=63.80  Aligned_cols=24  Identities=25%  Similarity=0.526  Sum_probs=21.7

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHc
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      .-++|+|+||+|||++|+.+++.+
T Consensus       202 ~~vLL~G~pGtGKT~la~~la~~l  225 (758)
T 3pxi_A          202 NNPVLIGEPGVGKTAIAEGLAQQI  225 (758)
T ss_dssp             CEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHHHH
Confidence            347899999999999999999886

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=93.52  E-value=0.032  Score=56.40  Aligned_cols=25  Identities=20%  Similarity=0.291  Sum_probs=21.9

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ...+++|+|+||||||||+..++..
T Consensus        29 ~G~i~~i~G~~GsGKTtl~~~l~~~   53 (279)
T 1nlf_A           29 AGTVGALVSPGGAGKSMLALQLAAQ   53 (279)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            4568999999999999999998864

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=93.51  E-value=0.51  Score=51.25  Aligned_cols=35  Identities=20%  Similarity=0.349  Sum_probs=26.9

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc----CCCeEEeeh
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQ   53 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~----~~~~~~Is~   53 (636)
                      +..++++.|+||+|||||+..++...    +.++..++.
T Consensus       202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~  240 (454)
T 2r6a_A          202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL  240 (454)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence            45699999999999999999987542    335555653

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=93.50  E-value=0.035  Score=53.45  Aligned_cols=23  Identities=30%  Similarity=0.538  Sum_probs=20.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHc
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      ++.|+|++||||||+.+.++..+
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhhc
Confidence            57899999999999999988654

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=93.32  E-value=0.041  Score=55.02  Aligned_cols=24  Identities=29%  Similarity=0.506  Sum_probs=21.6

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHc
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      .++.|+|++||||||+.+.++-..
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCC
Confidence            789999999999999999998654

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=93.31  E-value=0.23  Score=51.12  Aligned_cols=29  Identities=31%  Similarity=0.480  Sum_probs=23.6

Q ss_pred             cccCccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           15 EKKWKQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        15 ~~~~~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      +.++++-.|.++|.||+|||||..+|...
T Consensus         5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A            5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             --CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            34566778999999999999999999753

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=93.24  E-value=0.034  Score=54.86  Aligned_cols=26  Identities=38%  Similarity=0.405  Sum_probs=21.7

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +..++.|+|++|||||||.+.++-..
T Consensus        29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           29 KGEFVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34578999999999999999987543

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=93.22  E-value=0.19  Score=51.27  Aligned_cols=35  Identities=14%  Similarity=0.247  Sum_probs=28.3

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhh
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT   55 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~   55 (636)
                      .++++.|++|+||||+++++++..+..+..++...
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~   65 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK   65 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence            48999999999999999999988764555666543

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=93.12  E-value=0.069  Score=53.58  Aligned_cols=30  Identities=23%  Similarity=0.359  Sum_probs=25.6

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcCCCeEEee
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARIC   52 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is   52 (636)
                      .+|.|+|.+||||||+|+.|.+.+|  +.++.
T Consensus         2 ~~i~ltG~~~sGK~tv~~~l~~~~g--~~~~~   31 (241)
T 1dek_A            2 KLIFLSGVKRSGKDTTADFIMSNYS--AVKYQ   31 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSC--EEECC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC--CeEEe
Confidence            4789999999999999999998887  54454

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=93.10  E-value=0.041  Score=54.75  Aligned_cols=26  Identities=31%  Similarity=0.494  Sum_probs=22.0

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +..++.|+|++|||||||.+.++...
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           30 EGALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34688999999999999999987543

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=93.09  E-value=0.03  Score=57.79  Aligned_cols=23  Identities=30%  Similarity=0.433  Sum_probs=21.7

Q ss_pred             EEEEccCCCcHHHHHHHHHHHcC
Q 006654           23 VIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ++|.|+||+|||++|+.+++.++
T Consensus        48 vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           48 VLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             EEEECCGGGCTTHHHHHHHHHSC
T ss_pred             EEEECCCCccHHHHHHHHHHhCc
Confidence            88999999999999999999876

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=93.07  E-value=0.049  Score=53.06  Aligned_cols=35  Identities=23%  Similarity=0.444  Sum_probs=25.9

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH----cCCCeEEeeh
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS----SARPWARICQ   53 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~----~~~~~~~Is~   53 (636)
                      +..++++.|.||+|||+||-+++..    .+.+...++.
T Consensus        29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~   67 (251)
T 2zts_A           29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL   67 (251)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence            4579999999999999999987643    2334444553

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=93.00  E-value=0.06  Score=48.58  Aligned_cols=25  Identities=24%  Similarity=0.418  Sum_probs=21.6

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ...-|+++|.+|+|||||..++...
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcC
Confidence            4556899999999999999999864

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=92.93  E-value=0.081  Score=55.52  Aligned_cols=26  Identities=12%  Similarity=0.139  Sum_probs=23.2

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      +...++++.|+|||||||||..++..
T Consensus       120 ~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          120 ESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            35679999999999999999999876

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=92.90  E-value=0.051  Score=54.21  Aligned_cols=26  Identities=27%  Similarity=0.414  Sum_probs=22.3

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +..++.|+|++||||||+.+.++...
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           27 PNSIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45689999999999999999987544

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=92.85  E-value=0.067  Score=55.30  Aligned_cols=64  Identities=16%  Similarity=0.140  Sum_probs=37.7

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcC----CCeEEeehhhh----cCCCCCcHHHHHHHHHHHHhCCCeEEEeCC
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSA----RPWARICQDTI----NKGKSGTKVQCLTSASSALKKGKSVFLDRC   86 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~----~~~~~Is~D~i----r~~~~~~~~~~~~~~~~~L~~G~~VIID~t   86 (636)
                      ..-++|.|+||+|||++|..++..+.    .++..++...+    .... ... . .......+.....+|||..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~-~~~-~-~~~~~~~~~~~~lLiiDdi  223 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAI-SNG-S-VKEEIDAVKNVPVLILDDI  223 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCC-C------CCTTHHHHTSSEEEEETC
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHh-ccc-h-HHHHHHHhcCCCEEEEcCC
Confidence            45688999999999999999986543    44444554332    1111 000 0 1112234455567899985

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=92.83  E-value=0.065  Score=54.62  Aligned_cols=28  Identities=18%  Similarity=0.338  Sum_probs=24.0

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ++..-|+|.||||+|||++|..|+..++
T Consensus       102 ~~~n~~~l~GppgtGKt~~a~ala~~~~  129 (267)
T 1u0j_A          102 GKRNTIWLFGPATTGKTNIAEAIAHTVP  129 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHhhhc
Confidence            4455799999999999999999998754

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=92.82  E-value=0.047  Score=55.20  Aligned_cols=26  Identities=31%  Similarity=0.454  Sum_probs=22.1

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +..++.|+|++|||||||.+.++...
T Consensus        31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           31 AGDVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            44678999999999999999987544

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=92.81  E-value=0.069  Score=51.25  Aligned_cols=27  Identities=30%  Similarity=0.460  Sum_probs=23.2

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      +...|+++|.+||||||+..+|+....
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~   55 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIG   55 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            456789999999999999999987753

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=92.74  E-value=0.047  Score=55.39  Aligned_cols=26  Identities=27%  Similarity=0.396  Sum_probs=22.0

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +..++.|+|++||||||+.+.++-..
T Consensus        36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           36 SGEMVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            34678999999999999999987543

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=92.73  E-value=0.41  Score=51.79  Aligned_cols=35  Identities=17%  Similarity=0.230  Sum_probs=27.0

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc----CCCeEEeeh
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQ   53 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~----~~~~~~Is~   53 (636)
                      +..++++.|+||+||||||..++...    +.++..++.
T Consensus       199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl  237 (444)
T 2q6t_A          199 PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL  237 (444)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence            45699999999999999999987542    345556664

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=92.73  E-value=0.068  Score=48.98  Aligned_cols=22  Identities=27%  Similarity=0.501  Sum_probs=20.0

Q ss_pred             EEEEEEccCCCcHHHHHHHHHH
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMR   42 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak   42 (636)
                      ..|+++|+||+||||+.+++..
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            5689999999999999999975

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=92.72  E-value=0.068  Score=55.51  Aligned_cols=26  Identities=23%  Similarity=0.502  Sum_probs=23.0

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      ...++++.|+|||||||||.+++...
T Consensus       106 ~G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          106 TRTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHhHHHHHHHHHH
Confidence            45689999999999999999998764

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=92.72  E-value=0.068  Score=56.89  Aligned_cols=27  Identities=33%  Similarity=0.427  Sum_probs=23.2

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      .+..+++++|++||||||+.+.++..+
T Consensus       134 ~~g~~i~ivG~~GsGKTTll~~l~~~~  160 (372)
T 2ewv_A          134 RKMGLILVTGPTGSGKSTTIASMIDYI  160 (372)
T ss_dssp             SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            345689999999999999999988654

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=92.69  E-value=0.32  Score=52.96  Aligned_cols=35  Identities=14%  Similarity=0.237  Sum_probs=26.8

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeeh
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ   53 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~   53 (636)
                      +..++++.|.||+||||||-+++...   +.++..++.
T Consensus       196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl  233 (444)
T 3bgw_A          196 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL  233 (444)
T ss_dssp             SSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence            45799999999999999999987543   334555553

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=92.67  E-value=0.065  Score=56.51  Aligned_cols=26  Identities=23%  Similarity=0.314  Sum_probs=23.4

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ...+.|+|++|||||||++.|+..+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~  195 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFN  195 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            46789999999999999999998876

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=92.64  E-value=0.044  Score=55.99  Aligned_cols=26  Identities=23%  Similarity=0.356  Sum_probs=22.0

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +..++.|+|++||||||+.+.++-..
T Consensus        33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           33 RGEVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            34678999999999999999987544

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=92.62  E-value=0.052  Score=55.06  Aligned_cols=26  Identities=35%  Similarity=0.529  Sum_probs=22.1

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +..++.|+|++|||||||.+.++...
T Consensus        49 ~Gei~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           49 EGEVVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence            44678999999999999999987544

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=92.59  E-value=0.047  Score=53.33  Aligned_cols=24  Identities=25%  Similarity=0.369  Sum_probs=20.9

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ..++.|+|++|||||||.+.++..
T Consensus        22 Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           22 NTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            457899999999999999998754

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=92.54  E-value=0.064  Score=54.40  Aligned_cols=25  Identities=28%  Similarity=0.398  Sum_probs=21.7

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      +..++.|+|++|||||||.+.++-.
T Consensus        45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           45 PGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4467899999999999999998864

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=92.53  E-value=0.062  Score=53.85  Aligned_cols=25  Identities=28%  Similarity=0.411  Sum_probs=21.6

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      +..++.|+|++|||||||.+.++..
T Consensus        28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           28 KGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3457899999999999999998863

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=92.53  E-value=0.081  Score=49.03  Aligned_cols=25  Identities=28%  Similarity=0.489  Sum_probs=21.7

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ++..|+++|.+|+|||||.++|...
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3467899999999999999999863

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=92.52  E-value=0.049  Score=54.58  Aligned_cols=27  Identities=33%  Similarity=0.444  Sum_probs=22.5

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      +..++.|+|++||||||+.+.++....
T Consensus        34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   60 (247)
T 2ff7_A           34 QGEVIGIVGRSGSGKSTLTKLIQRFYI   60 (247)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            346789999999999999999876543

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=92.50  E-value=0.05  Score=54.23  Aligned_cols=26  Identities=27%  Similarity=0.448  Sum_probs=22.1

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +..++.|+|++||||||+.+.++...
T Consensus        31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           31 RGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34678999999999999999987654

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=92.49  E-value=0.28  Score=53.25  Aligned_cols=22  Identities=36%  Similarity=0.581  Sum_probs=19.5

Q ss_pred             EEEEEEccCCCcHHHHHHHHHH
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMR   42 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak   42 (636)
                      ..|+|+|.||+|||||..+|..
T Consensus        24 ~~V~lvG~~nvGKSTL~n~l~~   45 (456)
T 4dcu_A           24 PVVAIVGRPNVGKSTIFNRIAG   45 (456)
T ss_dssp             CEEEEECSSSSSHHHHHHHHEE
T ss_pred             CEEEEECCCCCcHHHHHHHHhC
Confidence            4689999999999999999864

>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp}

Probab=92.47  E-value=0.083  Score=48.02  Aligned_cols=37  Identities=16%  Similarity=0.126  Sum_probs=31.1

Q ss_pred             CCeEEEcCcEEEeccCCCCCcccccccCCCCccchhcc
Q 006654          576 DDLLEISDDVVVLNDLYPKVHPSDNLPPGTLLCICLSS  613 (636)
Q Consensus       576 ~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~~~~~~~~~  613 (636)
                      ..++|-|+.++++.|.+|.+..|+||+||.- ...|.|
T Consensus        19 ~~iV~e~~~~~af~d~~P~~pgH~LViPk~H-~~~l~d   55 (138)
T 3p0t_A           19 GRFVYEDDDVVAFLTIEPMTQGHTLVVPREE-IDNWQD   55 (138)
T ss_dssp             CCEEEECSSEEEEECSSCSSTTCEEEEESSC-CCCGGG
T ss_pred             cCEEEeCCCEEEEecCCCCCCcEEEEEEhHH-hCchhh
Confidence            3599999999999999999999999999865 333433

>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A*

Probab=92.47  E-value=0.071  Score=49.01  Aligned_cols=29  Identities=14%  Similarity=-0.029  Sum_probs=27.7

Q ss_pred             CeEEEcCcEEEeccCCCCCcccccccCCC
Q 006654          577 DLLEISDDVVVLNDLYPKVHPSDNLPPGT  605 (636)
Q Consensus       577 ~~~~~~~~~~~~~d~~pk~~~~~l~~~~~  605 (636)
                      .++|-|+.++++.|.+|.+..|+||+||.
T Consensus        14 ~iv~e~~~~~a~~d~~p~~pgh~LViPk~   42 (147)
T 1fit_A           14 VVFLKTELSFALVNRKPVVPGHVLVCPLR   42 (147)
T ss_dssp             GEEEECSSEEEEECSSCSSTTCEEEEESS
T ss_pred             EEEEECCCEEEEECCCCCCCcEEEEEEcc
Confidence            38999999999999999999999999996

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=92.44  E-value=0.057  Score=54.94  Aligned_cols=27  Identities=30%  Similarity=0.352  Sum_probs=22.7

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      +..++.|+|++|||||||.+.|+....
T Consensus        44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~   70 (271)
T 2ixe_A           44 PGKVTALVGPNGSGKSTVAALLQNLYQ   70 (271)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            446789999999999999999876543

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=92.42  E-value=0.064  Score=56.52  Aligned_cols=26  Identities=23%  Similarity=0.335  Sum_probs=23.3

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      ...++.|+|+||||||||+..++...
T Consensus       130 ~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          130 TQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45789999999999999999998765

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=92.42  E-value=0.085  Score=47.14  Aligned_cols=23  Identities=30%  Similarity=0.572  Sum_probs=20.3

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHH
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      .-|+++|.+|+||||+..++...
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            35899999999999999999864

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=92.40  E-value=0.052  Score=54.67  Aligned_cols=26  Identities=31%  Similarity=0.441  Sum_probs=22.0

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      ...++.|+|++||||||+.+.++...
T Consensus        32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           32 KGDVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34578999999999999999987544

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=92.38  E-value=0.12  Score=53.13  Aligned_cols=38  Identities=29%  Similarity=0.302  Sum_probs=29.0

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhh
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI   56 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~i   56 (636)
                      ++.++.++|++|+||||++..|+..+   +.....++.|..
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~  137 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ  137 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcc
Confidence            57788899999999999999988543   334555666653

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=92.37  E-value=0.059  Score=54.42  Aligned_cols=26  Identities=35%  Similarity=0.439  Sum_probs=22.1

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +..++.|+|++||||||+.+.|+..+
T Consensus        45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           45 SGTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccC
Confidence            44688999999999999999987543

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=92.36  E-value=0.075  Score=55.74  Aligned_cols=26  Identities=35%  Similarity=0.395  Sum_probs=22.9

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      .+..++.|+|+|||||||+.+.|...
T Consensus        53 ~~g~~v~i~G~~GaGKSTLl~~l~g~   78 (337)
T 2qm8_A           53 GRAIRVGITGVPGVGKSTTIDALGSL   78 (337)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            45678999999999999999999854

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=92.34  E-value=0.088  Score=47.19  Aligned_cols=23  Identities=26%  Similarity=0.495  Sum_probs=20.4

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHH
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      .-|+++|.||+|||||..++...
T Consensus         4 ~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            4 YKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            45899999999999999998854

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=92.34  E-value=0.09  Score=50.63  Aligned_cols=26  Identities=27%  Similarity=0.410  Sum_probs=22.7

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +...|+++|.+|+||||+..+++...
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            45678889999999999999998764

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=92.34  E-value=0.06  Score=54.36  Aligned_cols=26  Identities=19%  Similarity=0.276  Sum_probs=22.1

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +..++.|+|+.|||||||.+.|+-..
T Consensus        40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           40 EGEIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            44688999999999999999987544

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=92.30  E-value=0.055  Score=53.53  Aligned_cols=26  Identities=23%  Similarity=0.469  Sum_probs=22.2

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +..++.|+|+.||||||+.+.++...
T Consensus        33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           33 RGQLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34578999999999999999988654

>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} SCOP: d.13.1.0

Probab=92.30  E-value=0.089  Score=48.78  Aligned_cols=37  Identities=14%  Similarity=0.174  Sum_probs=31.4

Q ss_pred             CCeEEEcCcEEEeccCCCCCcccccccCCCCccchhcc
Q 006654          576 DDLLEISDDVVVLNDLYPKVHPSDNLPPGTLLCICLSS  613 (636)
Q Consensus       576 ~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~~~~~~~~~  613 (636)
                      ..++|-||.++++.|.+|.+..|+||+||.- ..+|.|
T Consensus        25 ~~iV~ed~~~~af~d~~P~~pgH~LViPk~H-~~~l~d   61 (149)
T 3ksv_A           25 CAKVAETSKALAFMDINPLSRGHMLVIPKEH-ASCLHE   61 (149)
T ss_dssp             CCEEEECSSEEEEECSSCSSTTCEEEEESSC-CSSGGG
T ss_pred             ccEEEECCCEEEEECCCCCCCCEEEEEeChh-hhhhhh
Confidence            4599999999999999999999999999975 344433

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=92.23  E-value=0.069  Score=50.55  Aligned_cols=24  Identities=29%  Similarity=0.569  Sum_probs=21.0

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ...|+++|++|+|||||.+.+...
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcC
Confidence            346899999999999999999864

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=92.22  E-value=0.07  Score=49.80  Aligned_cols=26  Identities=31%  Similarity=0.443  Sum_probs=22.4

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      +.+.+++|+.||||||+.++|.--++
T Consensus        26 ~g~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           26 KGFTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             SSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence            34889999999999999999987654

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=92.20  E-value=0.063  Score=54.34  Aligned_cols=26  Identities=31%  Similarity=0.383  Sum_probs=22.0

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +..++.|+|+.|||||||.+.++...
T Consensus        32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           32 EGECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            44678999999999999999987543

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=92.20  E-value=0.052  Score=53.34  Aligned_cols=25  Identities=24%  Similarity=0.291  Sum_probs=21.3

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      ..++.|+|+.||||||+.+.++...
T Consensus        35 Ge~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           35 GNVVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            4578899999999999999987544

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=92.17  E-value=0.11  Score=47.15  Aligned_cols=26  Identities=19%  Similarity=0.440  Sum_probs=22.2

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      .++.-|+++|.+|+|||||..++...
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcC
Confidence            34567899999999999999999753

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=92.14  E-value=0.089  Score=55.75  Aligned_cols=103  Identities=21%  Similarity=0.180  Sum_probs=52.7

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCC---CeEEeehhhhc---CCC--------CCc-HHHHHHHHHHHHhCCCe-EE
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSAR---PWARICQDTIN---KGK--------SGT-KVQCLTSASSALKKGKS-VF   82 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~---~~~~Is~D~ir---~~~--------~~~-~~~~~~~~~~~L~~G~~-VI   82 (636)
                      +..+++++|++||||||+.+.++.....   .......|.+.   ...        .+. ...+...+.++|..... ++
T Consensus       122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvil  201 (356)
T 3jvv_A          122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIIL  201 (356)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEe
Confidence            3458999999999999999998765421   11112122211   000        000 01122455666765554 55


Q ss_pred             EeCCCCCHHHHHHHHHhCCCCCeEEEEEE-eCCHHHHHHHHH
Q 006654           83 LDRCNLEREQRTDFVKLGGPEVDVHAVVL-DLPAKLCISRSV  123 (636)
Q Consensus        83 ID~tn~~~~~R~~l~~l~~~g~~v~vV~L-d~p~e~l~~R~~  123 (636)
                      +|- +...+....+.++...|..+ ++.+ +.+......|+.
T Consensus       202 lDE-p~d~e~~~~~~~~~~~G~~v-l~t~H~~~~~~~~dRli  241 (356)
T 3jvv_A          202 VGE-MRDLETIRLALTAAETGHLV-FGTLHTTSAAKTIDRVV  241 (356)
T ss_dssp             ESC-CCSHHHHHHHHHHHHTTCEE-EEEESCSSHHHHHHHHH
T ss_pred             cCC-CCCHHHHHHHHHHHhcCCEE-EEEEccChHHHHHHHHh
Confidence            555 66766665555552224433 2233 333334445554

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=92.14  E-value=0.72  Score=48.38  Aligned_cols=100  Identities=13%  Similarity=0.064  Sum_probs=56.2

Q ss_pred             EEEEccCCCcHHH-------HHHHHHHHcCCC--eEEeehhhhcCC-----------------CCCcHHHHH---HHHHH
Q 006654           23 VIMVGAPGSGKST-------FCEHVMRSSARP--WARICQDTINKG-----------------KSGTKVQCL---TSASS   73 (636)
Q Consensus        23 IvLvG~PGSGKST-------lAr~Lak~~~~~--~~~Is~D~ir~~-----------------~~~~~~~~~---~~~~~   73 (636)
                      |+|+||.+.|==+       +-..+.++++..  +.++..|.-..+                 ..+....+.   ..+.+
T Consensus       145 vvlvGP~~~g~~~td~m~~~l~d~l~~~F~~~i~~tR~~~d~~~~~r~~~~~~~~~~~~e~~~~~~~~~ev~seVe~i~~  224 (337)
T 4dey_A          145 VVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISITRVTADISLAKRSVLNNPSKHAIIERSNTRSSLAEVQSEIERIFE  224 (337)
T ss_dssp             EEEECSSCTTSHHHHHHHHHHHHHHHHHTTTSEEEEEECSCGGGC-------------------CCCHHHHHHHHHHHHH
T ss_pred             eEEECCccccchhHHHHHHHHHHhhHHhcCCccceEeecchhhhcchhhhhcccchhhhcccccccchHHHHhHHHHHHH
Confidence            7899999999764       455566777743  333333322111                 111223333   34444


Q ss_pred             HHhCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           74 ALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        74 ~L~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      ..+.|+.+|+|--.-+     ....+ +.....+.++....+.++|.+|+..|+.
T Consensus       225 v~~~Gk~vILDIDvQn-----Ga~qlk~~~~~~i~IFI~PPS~eeLe~RL~~RGt  274 (337)
T 4dey_A          225 LARTLQLVVLDADTIN-----HPAQLSKTSLAPIVVYVKISSPKVLQRLIKSRGK  274 (337)
T ss_dssp             HTTTCCEEEEEETTCC-----SGGGTTTSSCCCEEEEECCSCHHHHHHHHHTTCH
T ss_pred             HHhCCCEEEEEeCcHH-----HHHHHHhcCCCCEEEEEECcCHHHHHHHHHhCCc
Confidence            5568899999983210     22233 3333334444445678999999999975

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=92.11  E-value=0.052  Score=51.50  Aligned_cols=24  Identities=25%  Similarity=0.339  Sum_probs=20.7

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMR   42 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak   42 (636)
                      +...|+|+|++|||||||.+.|..
T Consensus        25 ~~~~v~lvG~~g~GKSTLl~~l~g   48 (210)
T 1pui_A           25 TGIEVAFAGRSNAGKSSALNTLTN   48 (210)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            456799999999999999998763

>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast collaboratory for structural GEN secsg; 2.30A {Clostridium thermocellum} SCOP: d.13.1.1

Probab=92.10  E-value=0.065  Score=49.69  Aligned_cols=40  Identities=13%  Similarity=0.189  Sum_probs=32.3

Q ss_pred             HHHHhcCccCCCCCeEEEcCcEEEeccCCCCCcccccccCCC
Q 006654          564 LYRTAMYPERHKDDLLEISDDVVVLNDLYPKVHPSDNLPPGT  605 (636)
Q Consensus       564 ~~~~~~~p~~~~~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~  605 (636)
                      |-+++.. |. +..++|.||.++++.|.||.+..|+||+||.
T Consensus        39 FC~ii~~-e~-~~~iV~e~e~~~af~d~~P~~pgH~LViPkr   78 (147)
T 1xqu_A           39 FCKIIKR-EL-PSTIYYEDERVIAIKDINPAAPVHVLIIPKE   78 (147)
T ss_dssp             HHHHHTT-SS-CBCEEEECSSEEEEECSSCSSSEEEEEEESS
T ss_pred             ccccccC-CC-CcEEEEECCcEEEEEecCCCCccEEEEEeCc
Confidence            4444433 22 3469999999999999999999999999996

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=92.10  E-value=0.081  Score=47.43  Aligned_cols=22  Identities=32%  Similarity=0.711  Sum_probs=19.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      -|+++|.+|+||||+..++...
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999999864

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=92.08  E-value=0.093  Score=47.06  Aligned_cols=24  Identities=42%  Similarity=0.508  Sum_probs=20.9

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      +.-|+++|.+|+|||||..++...
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            356899999999999999999864

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=92.03  E-value=0.22  Score=52.10  Aligned_cols=22  Identities=36%  Similarity=0.439  Sum_probs=19.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ++.+.|+||||||||+-+++..
T Consensus        30 iteI~G~pGsGKTtL~Lq~~~~   51 (333)
T 3io5_A           30 LLILAGPSKSFKSNFGLTMVSS   51 (333)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            7899999999999999887654

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=92.00  E-value=0.062  Score=54.02  Aligned_cols=26  Identities=27%  Similarity=0.434  Sum_probs=21.9

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +..++.|+|++|||||||.+.++-..
T Consensus        25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           25 AGEILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            34578999999999999999987544

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=91.99  E-value=0.14  Score=53.66  Aligned_cols=37  Identities=32%  Similarity=0.321  Sum_probs=27.4

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehh
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD   54 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D   54 (636)
                      .+..+|.++|+||+||||+...|+..+   +.....++.|
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d   93 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD   93 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeec
Confidence            456788999999999999999997543   3334445544

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=91.98  E-value=0.21  Score=55.35  Aligned_cols=108  Identities=11%  Similarity=0.041  Sum_probs=69.4

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCC-eEEee----hhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCCCCH--
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARP-WARIC----QDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLER--   90 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~-~~~Is----~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn~~~--   90 (636)
                      ..+.+|++-|.-||||+|..+.|.+.+... +.++.    ++.-...+.. +    +.....-..|.-+|.|..-+..  
T Consensus       298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~Pt~~E~~~~yl-~----R~~~~lP~~G~i~IfDRswY~~~~  372 (500)
T 3czp_A          298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAAPTEEERAQPYL-W----RFWRHIPARRQFTIFDRSWYGRVL  372 (500)
T ss_dssp             GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECCSCCHHHHTSCTT-H----HHHTTCCCTTCEEEEESCGGGGGT
T ss_pred             CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhhcchHH-H----HHHHhCCCCCeEEEEeCcchhhHH
Confidence            478999999999999999999999887632 22222    1111111111 1    1111122578889999844332  


Q ss_pred             ----------HHHH-H------HHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 006654           91 ----------EQRT-D------FVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEG  130 (636)
Q Consensus        91 ----------~~R~-~------l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~  130 (636)
                                .+.. .      |... ...|+.+..++|+++.++..+|...|...+.
T Consensus       373 v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~~p~  430 (500)
T 3czp_A          373 VERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREKTPY  430 (500)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHHSSC
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhcCCc
Confidence                      2111 1      2222 4567888899999999999999999987544

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=91.97  E-value=0.097  Score=47.26  Aligned_cols=23  Identities=30%  Similarity=0.479  Sum_probs=20.3

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMR   42 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak   42 (636)
                      ..-|+++|.+|+|||||..++..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc
Confidence            34589999999999999999985

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=91.96  E-value=0.093  Score=47.95  Aligned_cols=25  Identities=24%  Similarity=0.440  Sum_probs=21.4

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ++..|+++|.+|+|||||..++...
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4566899999999999999999753

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=91.95  E-value=0.11  Score=48.08  Aligned_cols=25  Identities=16%  Similarity=0.379  Sum_probs=22.0

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ++.-|+++|.+|+|||||..+|...
T Consensus         6 ~~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            6 SSYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            4566899999999999999999865

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=91.94  E-value=0.094  Score=48.60  Aligned_cols=24  Identities=25%  Similarity=0.523  Sum_probs=21.0

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ...|+|+|.||+|||||.++|...
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            456899999999999999999854

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=91.94  E-value=0.11  Score=47.55  Aligned_cols=25  Identities=20%  Similarity=0.496  Sum_probs=21.3

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ++.-|+++|.+|+|||||..++...
T Consensus         5 ~~~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhC
Confidence            4566899999999999999998743

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=91.93  E-value=0.12  Score=59.64  Aligned_cols=36  Identities=14%  Similarity=0.206  Sum_probs=30.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir   57 (636)
                      -++|.|+||+|||++|+.+++.++.++..++...+.
T Consensus       490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~  525 (758)
T 1r6b_X          490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYM  525 (758)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCS
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhc
Confidence            689999999999999999999998777778765553

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=91.87  E-value=0.064  Score=54.81  Aligned_cols=27  Identities=26%  Similarity=0.276  Sum_probs=22.4

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      +..++.|+|++|||||||.+.|+-...
T Consensus        46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~   72 (279)
T 2ihy_A           46 KGDKWILYGLNGAGKTTLLNILNAYEP   72 (279)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            345789999999999999999876543

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=91.84  E-value=0.11  Score=47.30  Aligned_cols=25  Identities=28%  Similarity=0.492  Sum_probs=21.8

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      +..-|+++|.+|+|||||.+++...
T Consensus         8 ~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            8 ETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            4457899999999999999999865

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=91.84  E-value=0.066  Score=53.88  Aligned_cols=26  Identities=27%  Similarity=0.452  Sum_probs=22.0

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +..++.|+|++||||||+.+.++...
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           30 KGDILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34578999999999999999987654

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=91.83  E-value=0.11  Score=47.53  Aligned_cols=25  Identities=24%  Similarity=0.531  Sum_probs=21.6

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ...-|+++|.+|+|||||..++...
T Consensus         7 ~~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            7 NILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            4566899999999999999999864

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=91.82  E-value=0.092  Score=54.07  Aligned_cols=33  Identities=27%  Similarity=0.469  Sum_probs=26.1

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEee
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSA---RPWARIC   52 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is   52 (636)
                      +.-|+|.|+||+|||++|+.+.....   .+++.++
T Consensus        25 ~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~   60 (304)
T 1ojl_A           25 DATVLIHGDSGTGKELVARALHACSARSDRPLVTLN   60 (304)
T ss_dssp             TSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEE
T ss_pred             CCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEe
Confidence            34578999999999999999998653   3566665

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=91.82  E-value=0.1  Score=48.07  Aligned_cols=25  Identities=28%  Similarity=0.562  Sum_probs=21.7

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ++.-|+++|.+|+|||||..+|...
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhC
Confidence            4556899999999999999999854

>3r6f_A HIT family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, protozoan parasite; 1.85A {Encephalitozoon cuniculi}

Probab=91.74  E-value=0.1  Score=47.39  Aligned_cols=37  Identities=19%  Similarity=0.200  Sum_probs=31.4

Q ss_pred             CCeEEEcCcEEEeccCCCCCcccccccCCCCccchhcc
Q 006654          576 DDLLEISDDVVVLNDLYPKVHPSDNLPPGTLLCICLSS  613 (636)
Q Consensus       576 ~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~~~~~~~~~  613 (636)
                      ..++|-||.++++.|.+|.+..|+||+||.- ...|.|
T Consensus        18 ~~iv~e~~~~~af~d~~p~~pgh~lViPk~H-~~~l~d   54 (135)
T 3r6f_A           18 ANIIYETDRLFALIDRYPLSKGHFLVIPKAH-HPYLHN   54 (135)
T ss_dssp             CSCCEECSSEEEEECSSCSSTTCEEEEESSC-CSSGGG
T ss_pred             ceEEEECCCEEEEECCCCCCCCeEEEEEhhH-hCCHhH
Confidence            4599999999999999999999999999975 344444

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=91.74  E-value=0.1  Score=54.93  Aligned_cols=25  Identities=40%  Similarity=0.522  Sum_probs=22.2

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ...+|.|+|+||||||||...|...
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~   97 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKM   97 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHH
Confidence            3678999999999999999999864

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=91.67  E-value=0.1  Score=49.80  Aligned_cols=26  Identities=27%  Similarity=0.385  Sum_probs=22.2

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      ...-|+++|++|+|||||..+|....
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            44568999999999999999998753

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=91.67  E-value=0.11  Score=46.93  Aligned_cols=25  Identities=16%  Similarity=0.295  Sum_probs=21.6

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ...-|+++|.+|+|||||.+++...
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            5 YSFKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            4456899999999999999999854

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=91.65  E-value=0.12  Score=47.73  Aligned_cols=25  Identities=20%  Similarity=0.441  Sum_probs=21.6

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ...-|+++|.+|+|||||.+++...
T Consensus         9 ~~~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A            9 FLFKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcC
Confidence            3456899999999999999999854

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=91.60  E-value=0.12  Score=47.06  Aligned_cols=23  Identities=26%  Similarity=0.553  Sum_probs=20.2

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMR   42 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak   42 (636)
                      +.-|+++|.||+|||||.+++..
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEEEECCCCccHHHHHHHHhc
Confidence            45689999999999999999874

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=91.60  E-value=0.11  Score=46.64  Aligned_cols=23  Identities=22%  Similarity=0.497  Sum_probs=20.3

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHH
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      .-|+++|.+|+|||||.+++...
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            45899999999999999999864

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=91.59  E-value=0.11  Score=48.45  Aligned_cols=26  Identities=27%  Similarity=0.385  Sum_probs=22.1

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      ....|+++|++|+|||||..++....
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            44578999999999999999998653

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=91.59  E-value=0.075  Score=56.42  Aligned_cols=28  Identities=29%  Similarity=0.432  Sum_probs=22.7

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      .+..-|+|.|.+||||||+++++.--++
T Consensus        31 ~~~~killlG~~~SGKST~~kq~~i~~~   58 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQMRIIHG   58 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHS
T ss_pred             cCccEEEEECCCCCcHHHHHHHHHHHhC
Confidence            3456789999999999999999854444

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=91.58  E-value=0.091  Score=53.35  Aligned_cols=23  Identities=35%  Similarity=0.645  Sum_probs=20.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHc
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      .+.++|++|||||||.+.|+...
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998654

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=91.53  E-value=0.11  Score=46.68  Aligned_cols=23  Identities=22%  Similarity=0.472  Sum_probs=20.2

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHH
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      .-|+++|.+|+|||||..++...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            45899999999999999999854

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=91.52  E-value=0.094  Score=55.68  Aligned_cols=26  Identities=23%  Similarity=0.436  Sum_probs=22.3

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +..++.|+||+||||||+.+.++--.
T Consensus        29 ~Ge~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           29 PGEILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcCC
Confidence            34678999999999999999998654

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=91.49  E-value=0.12  Score=47.54  Aligned_cols=25  Identities=20%  Similarity=0.306  Sum_probs=21.8

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      .+.-|+++|.+|+|||||..++...
T Consensus        10 ~~~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           10 YLIKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhcC
Confidence            4567899999999999999999864

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=91.45  E-value=0.098  Score=47.36  Aligned_cols=20  Identities=40%  Similarity=0.586  Sum_probs=18.4

Q ss_pred             EEEEEccCCCcHHHHHHHHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVM   41 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~La   41 (636)
                      -|+++|.||+|||||..++.
T Consensus         4 ki~ivG~~~~GKSsli~~l~   23 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFG   23 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47899999999999999986

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=91.45  E-value=0.081  Score=49.39  Aligned_cols=21  Identities=38%  Similarity=0.782  Sum_probs=19.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVMR   42 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak   42 (636)
                      -|+++|.+|+|||||.+++..
T Consensus         4 kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            488999999999999999875

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=91.44  E-value=0.092  Score=47.39  Aligned_cols=20  Identities=40%  Similarity=0.680  Sum_probs=18.2

Q ss_pred             EEEEEccCCCcHHHHHHHHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVM   41 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~La   41 (636)
                      -|+++|.||+|||||.+++.
T Consensus         4 ki~~vG~~~~GKSsli~~l~   23 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFG   23 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            47899999999999999885

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=91.44  E-value=0.11  Score=46.79  Aligned_cols=25  Identities=20%  Similarity=0.440  Sum_probs=21.5

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ++.-|+++|.+|+|||||..++...
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            5 CQFKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcC
Confidence            3456899999999999999999863

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=91.44  E-value=0.12  Score=51.11  Aligned_cols=27  Identities=11%  Similarity=0.001  Sum_probs=22.6

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      .+..++++.|+|||||||.+..++.++
T Consensus        10 ~~G~i~litG~mGsGKTT~ll~~~~r~   36 (223)
T 2b8t_A           10 KIGWIEFITGPMFAGKTAELIRRLHRL   36 (223)
T ss_dssp             -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence            345789999999999999999887665

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=91.43  E-value=0.11  Score=47.37  Aligned_cols=24  Identities=21%  Similarity=0.436  Sum_probs=20.8

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMR   42 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak   42 (636)
                      ...-|+++|.+|+|||||..+|..
T Consensus         8 ~~~~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B            8 HLFKLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHCS
T ss_pred             cceEEEEECCCCCCHHHHHHHHhc
Confidence            456789999999999999999863

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=91.42  E-value=0.11  Score=53.77  Aligned_cols=26  Identities=19%  Similarity=0.434  Sum_probs=22.7

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      .+..++++.|.||+|||||+..++..
T Consensus        66 ~~G~l~li~G~pG~GKTtl~l~ia~~   91 (315)
T 3bh0_A           66 KRRNFVLIAARPSMGKTAFALKQAKN   91 (315)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            34579999999999999999998864

>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle structural genomics center for infectious DIS ssgcid, histidine triad; 1.90A {Bartonella henselae}

Probab=91.40  E-value=0.12  Score=48.60  Aligned_cols=42  Identities=14%  Similarity=0.108  Sum_probs=33.6

Q ss_pred             HHHHHhcCccCCCCCeEEEcCcEEEeccCCCCCcccccccCCCC
Q 006654          563 ALYRTAMYPERHKDDLLEISDDVVVLNDLYPKVHPSDNLPPGTL  606 (636)
Q Consensus       563 a~~~~~~~p~~~~~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~~  606 (636)
                      -|-+++..-  -+..++|-||.++++.|.+|.+..|+||+||.-
T Consensus        31 iFC~i~~~e--~p~~iV~e~e~~~af~d~~P~~pgH~LViPk~H   72 (161)
T 3lb5_A           31 IFAKLIRNE--IPSVRVYEDDDVIAFMDIMPQAPGHTLVIPKKG   72 (161)
T ss_dssp             HHHHHHTTS--SCCCEEEECSSEEEEECSSCSSTTCEEEEESSC
T ss_pred             cccccccCC--CCccEEEECCCEEEEECCCcCCCcEEEEEEeec
Confidence            344555442  224599999999999999999999999999965

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=91.32  E-value=0.13  Score=55.76  Aligned_cols=28  Identities=25%  Similarity=0.319  Sum_probs=24.2

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      .+..+++++|++||||||+.+.+.....
T Consensus       165 ~~ggii~I~GpnGSGKTTlL~allg~l~  192 (418)
T 1p9r_A          165 RPHGIILVTGPTGSGKSTTLYAGLQELN  192 (418)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence            3456899999999999999999987764

>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle regulation, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Bacillus subtilis} SCOP: d.13.1.1

Probab=91.30  E-value=0.14  Score=46.83  Aligned_cols=30  Identities=13%  Similarity=0.114  Sum_probs=28.2

Q ss_pred             CCeEEEcCcEEEeccCCCCCcccccccCCC
Q 006654          576 DDLLEISDDVVVLNDLYPKVHPSDNLPPGT  605 (636)
Q Consensus       576 ~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~  605 (636)
                      ..++|.++.++++.|.+|.+..|+||+||.
T Consensus        19 ~~iv~e~~~~~a~~~~~p~~pgh~LViPk~   48 (145)
T 1y23_A           19 SAKVYEDEHVLAFLDISQVTKGHTLVIPKT   48 (145)
T ss_dssp             CCEEEECSSEEEEECTTCSSTTCEEEEESS
T ss_pred             CCEEEECCCEEEEECCCCCCCCeEEEEEhh
Confidence            459999999999999999999999999995

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=91.27  E-value=0.13  Score=46.29  Aligned_cols=23  Identities=22%  Similarity=0.548  Sum_probs=20.2

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHH
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      .-|+++|.+|+|||||..++...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            45899999999999999999853

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=91.26  E-value=0.13  Score=46.49  Aligned_cols=25  Identities=28%  Similarity=0.481  Sum_probs=21.5

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      ..-|+++|.+|+|||||.+++....
T Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            6 ELKVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCC
Confidence            4568999999999999999998653

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=91.19  E-value=0.14  Score=46.81  Aligned_cols=26  Identities=23%  Similarity=0.322  Sum_probs=22.2

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ..+.-|+++|.+|+|||||..++...
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhC
Confidence            34567899999999999999999764

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=91.18  E-value=0.12  Score=53.33  Aligned_cols=25  Identities=24%  Similarity=0.315  Sum_probs=22.6

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ...++++.|+|||||||||.+++..
T Consensus        97 ~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           97 SQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4579999999999999999999875

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=91.17  E-value=0.12  Score=47.04  Aligned_cols=24  Identities=29%  Similarity=0.513  Sum_probs=21.0

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ..-|+++|.+|+|||||..++...
T Consensus         7 ~~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            7 LFKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            456899999999999999999854

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=91.15  E-value=0.13  Score=47.01  Aligned_cols=25  Identities=20%  Similarity=0.476  Sum_probs=21.5

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      .+.-|+++|.+|+|||||..++...
T Consensus        11 ~~~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           11 INAKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            3457899999999999999999864

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=91.14  E-value=0.14  Score=46.54  Aligned_cols=25  Identities=24%  Similarity=0.355  Sum_probs=21.8

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ...-|+++|.+|+|||||..++...
T Consensus        14 ~~~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           14 YIFKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcC
Confidence            3467899999999999999999864

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=91.13  E-value=0.16  Score=51.73  Aligned_cols=31  Identities=19%  Similarity=0.219  Sum_probs=26.3

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ   53 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~   53 (636)
                      .++++.|++|+||||+++++++..+  +..++.
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~   62 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNERP--GILIDC   62 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEH
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEe
Confidence            5789999999999999999998875  555653

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=91.12  E-value=0.074  Score=58.95  Aligned_cols=24  Identities=25%  Similarity=0.398  Sum_probs=21.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcC
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      -++|.|+||+|||++|+.++...+
T Consensus        43 ~VLL~GpPGtGKT~LAraLa~~l~   66 (500)
T 3nbx_X           43 SVFLLGPPGIAKSLIARRLKFAFQ   66 (500)
T ss_dssp             EEEEECCSSSSHHHHHHHGGGGBS
T ss_pred             eeEeecCchHHHHHHHHHHHHHHh
Confidence            478999999999999999998775

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=91.10  E-value=0.11  Score=55.61  Aligned_cols=26  Identities=31%  Similarity=0.496  Sum_probs=22.3

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +..++.|+|++||||||+.+.|+--.
T Consensus        28 ~Ge~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           28 EGEFVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence            44688999999999999999998654

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=91.08  E-value=0.11  Score=47.86  Aligned_cols=24  Identities=25%  Similarity=0.508  Sum_probs=21.2

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHH
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVM   41 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~La   41 (636)
                      .++.-|+++|.+|+|||||..++.
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHh
Confidence            456779999999999999999886

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=91.06  E-value=0.11  Score=56.06  Aligned_cols=25  Identities=20%  Similarity=0.398  Sum_probs=21.4

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ...++.|+|+||||||||+..++-.
T Consensus       177 ~Gei~~I~G~sGsGKTTLl~~la~~  201 (400)
T 3lda_A          177 TGSITELFGEFRTGKSQLCHTLAVT  201 (400)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCChHHHHHHHHHH
Confidence            3568999999999999999988643

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=91.05  E-value=0.11  Score=55.06  Aligned_cols=26  Identities=23%  Similarity=0.289  Sum_probs=22.2

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      ...++.|+|++||||||+.+.++--.
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           28 DGEFVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence            44678999999999999999998544

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=91.04  E-value=0.15  Score=47.65  Aligned_cols=26  Identities=23%  Similarity=0.433  Sum_probs=22.2

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ....-|+++|.+|+|||||..+|...
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           23 NFVFKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcC
Confidence            34567899999999999999999864

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=91.03  E-value=0.13  Score=46.78  Aligned_cols=24  Identities=17%  Similarity=0.443  Sum_probs=20.9

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      +.-|+++|.+|+|||||..++...
T Consensus        14 ~~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           14 KFKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            356899999999999999999853

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=91.03  E-value=0.14  Score=48.09  Aligned_cols=28  Identities=21%  Similarity=0.450  Sum_probs=22.4

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ......-|+++|.+|+|||||..++...
T Consensus        19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           19 SAIRELKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             --CEEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred             ccCCceEEEEECcCCCCHHHHHHHHhcC
Confidence            3344567999999999999999999864

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=91.03  E-value=0.13  Score=47.92  Aligned_cols=25  Identities=20%  Similarity=0.367  Sum_probs=21.3

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ...-|+++|.+|+|||||..+|...
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4556899999999999999999753

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=91.01  E-value=0.12  Score=47.49  Aligned_cols=25  Identities=20%  Similarity=0.327  Sum_probs=21.5

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      +..-|+++|.+|+|||||..++...
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcC
Confidence            4567899999999999999999843

>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, hydrola structural genomics; HET: AMP; 1.90A {Mycobacterium smegmatis str}

Probab=90.99  E-value=0.14  Score=47.26  Aligned_cols=31  Identities=13%  Similarity=0.078  Sum_probs=28.9

Q ss_pred             CCeEEEcCcEEEeccCCCCCcccccccCCCC
Q 006654          576 DDLLEISDDVVVLNDLYPKVHPSDNLPPGTL  606 (636)
Q Consensus       576 ~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~~  606 (636)
                      ..++|-|+.++++-|.+|.+..|+||+||.-
T Consensus        19 ~~iv~e~~~~~af~d~~p~~pgh~lViPk~H   49 (149)
T 3o0m_A           19 AIRIYEDENFLGILDIRPFTRGHTLVIPKTH   49 (149)
T ss_dssp             CCEEEECSSEEEEECSSCSSTTCEEEEESSC
T ss_pred             CCEEEECCCEEEEEcCCCCCCCeEEEEechh
Confidence            4599999999999999999999999999965

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=90.98  E-value=0.14  Score=47.46  Aligned_cols=25  Identities=16%  Similarity=0.361  Sum_probs=21.8

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ...-|+++|.+|+|||||.+++...
T Consensus         6 ~~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            6 VKCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEEECCCCCCHHHHHHHHhcC
Confidence            4566899999999999999999864

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=90.98  E-value=0.14  Score=47.55  Aligned_cols=24  Identities=29%  Similarity=0.571  Sum_probs=21.2

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      +.-|+++|.+|+|||||..+|...
T Consensus        21 ~~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           21 EYKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECcCCCCHHHHHHHHHcC
Confidence            457899999999999999999864

>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii}

Probab=90.97  E-value=0.15  Score=46.92  Aligned_cols=30  Identities=13%  Similarity=0.156  Sum_probs=28.4

Q ss_pred             CCeEEEcCcEEEeccCCCCCcccccccCCC
Q 006654          576 DDLLEISDDVVVLNDLYPKVHPSDNLPPGT  605 (636)
Q Consensus       576 ~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~  605 (636)
                      ..++|.++.++++.|.+|.+..|+||+||.
T Consensus        13 ~~iv~e~~~~~a~~d~~p~~pgh~lViPk~   42 (149)
T 2eo4_A           13 GYFVYEDEKFAAILDKYPVSLGHTLVIPKK   42 (149)
T ss_dssp             CCEEEECSSEEEEECSSCSSTTCEEEEESS
T ss_pred             ccEEEECCCEEEEECCCCCCCCeEEEEech
Confidence            469999999999999999999999999997

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=90.93  E-value=0.1  Score=52.95  Aligned_cols=25  Identities=32%  Similarity=0.416  Sum_probs=21.6

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      ..++.|+|++|||||||.+.++-..
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCC
Confidence            4578999999999999999987543

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=90.91  E-value=0.12  Score=55.07  Aligned_cols=26  Identities=31%  Similarity=0.351  Sum_probs=22.2

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +..++.|+|++||||||+.+.++--.
T Consensus        53 ~Gei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           53 AGQIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence            44678999999999999999988644

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=90.90  E-value=0.12  Score=54.96  Aligned_cols=26  Identities=27%  Similarity=0.386  Sum_probs=22.2

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      ...++.|+|++||||||+.+.++--.
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           28 DGEFMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcCC
Confidence            44678999999999999999998654

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=90.86  E-value=0.15  Score=47.50  Aligned_cols=26  Identities=15%  Similarity=0.429  Sum_probs=22.3

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ....-|+++|.+|+|||||.+++...
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcC
Confidence            45677999999999999999998754

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=90.82  E-value=0.082  Score=54.89  Aligned_cols=27  Identities=30%  Similarity=0.409  Sum_probs=22.8

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      +..++.|+|++||||||+.+.|+..+.
T Consensus        79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~  105 (306)
T 3nh6_A           79 PGQTLALVGPSGAGKSTILRLLFRFYD  105 (306)
T ss_dssp             TTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCchHHHHHHHHHcCCC
Confidence            346789999999999999999886554

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=90.78  E-value=0.58  Score=48.06  Aligned_cols=24  Identities=33%  Similarity=0.544  Sum_probs=20.8

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ...|+++|.||+|||||..+|...
T Consensus         7 ~g~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            7 SGFVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            346899999999999999999853

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=90.78  E-value=0.16  Score=46.72  Aligned_cols=25  Identities=24%  Similarity=0.437  Sum_probs=21.6

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      +..-|+++|.+|+|||||..++...
T Consensus        17 ~~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           17 PTYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3457899999999999999999854

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=90.76  E-value=0.11  Score=53.48  Aligned_cols=26  Identities=23%  Similarity=0.469  Sum_probs=22.1

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +..++.|+|+.||||||+.+.++...
T Consensus        63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           63 RGQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            44678999999999999999987554

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=90.72  E-value=0.13  Score=53.41  Aligned_cols=25  Identities=24%  Similarity=0.557  Sum_probs=21.8

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      -.+++++|+.||||||+.+.|....
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhc
Confidence            4578999999999999999998654

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=90.69  E-value=0.16  Score=47.81  Aligned_cols=25  Identities=24%  Similarity=0.511  Sum_probs=21.9

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ...-|+++|.+|+|||||..+|...
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            7 VLLKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            4567899999999999999999865

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=90.68  E-value=0.15  Score=45.96  Aligned_cols=21  Identities=29%  Similarity=0.472  Sum_probs=19.2

Q ss_pred             EEEEccCCCcHHHHHHHHHHH
Q 006654           23 VIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~   43 (636)
                      |+++|.+|+|||||..++...
T Consensus         3 i~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            789999999999999999764

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=90.68  E-value=0.13  Score=54.93  Aligned_cols=26  Identities=19%  Similarity=0.399  Sum_probs=22.2

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +..++.|+|++||||||+.+.++--.
T Consensus        36 ~Ge~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           36 DGEFLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCC
Confidence            44688999999999999999998544

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=90.66  E-value=0.12  Score=54.91  Aligned_cols=26  Identities=27%  Similarity=0.401  Sum_probs=22.1

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      ...++.|+|++||||||+.+.++--.
T Consensus        40 ~Ge~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           40 EGEMVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            34678999999999999999998544

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=90.64  E-value=0.16  Score=46.63  Aligned_cols=24  Identities=42%  Similarity=0.508  Sum_probs=21.1

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ..-|+++|.+|+|||||.+++...
T Consensus        18 ~~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           18 LHKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhC
Confidence            456899999999999999999864

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=90.64  E-value=0.56  Score=50.57  Aligned_cols=21  Identities=38%  Similarity=0.650  Sum_probs=19.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVMR   42 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak   42 (636)
                      .|+|+|.||+|||||..+|..
T Consensus         5 ~V~ivG~~nvGKStL~n~l~~   25 (436)
T 2hjg_A            5 VVAIVGRPNVGKSTIFNRIAG   25 (436)
T ss_dssp             EEEEECSTTSSHHHHHHHHEE
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999864

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=90.63  E-value=0.18  Score=47.07  Aligned_cols=25  Identities=28%  Similarity=0.509  Sum_probs=21.6

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ...-|+++|.+|+|||||..+|...
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHcC
Confidence            4456899999999999999999863

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=90.60  E-value=0.15  Score=47.22  Aligned_cols=24  Identities=25%  Similarity=0.351  Sum_probs=20.6

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ..-|+++|.+|+|||||..++...
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           23 KGEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcC
Confidence            346889999999999999999754

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=90.59  E-value=0.14  Score=47.37  Aligned_cols=26  Identities=27%  Similarity=0.319  Sum_probs=21.3

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      .+..-|+++|.+|+|||||..++...
T Consensus        19 ~~~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           19 SQEHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcC
Confidence            34567899999999999999999854

>3imi_A HIT family protein; structural genomics, infectious diseases for structural genomics of infectious diseases, unknown FUN csgid; 2.01A {Bacillus anthracis str} SCOP: d.13.1.1

Probab=90.58  E-value=0.17  Score=46.51  Aligned_cols=31  Identities=10%  Similarity=0.033  Sum_probs=28.7

Q ss_pred             CCeEEEcCcEEEeccCCCCCcccccccCCCC
Q 006654          576 DDLLEISDDVVVLNDLYPKVHPSDNLPPGTL  606 (636)
Q Consensus       576 ~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~~  606 (636)
                      ..++|-|+.++++-|.+|.+..|+||+||.-
T Consensus        23 ~~iV~e~~~~~a~~d~~p~~pgh~lViPk~H   53 (147)
T 3imi_A           23 CSKVYEDEHVLAFLDISQVTKGHTLVIPKVH   53 (147)
T ss_dssp             CCEEEECSSEEEEECTTCSSTTCEEEEESSC
T ss_pred             CCEEEECCCEEEEEcCCCCCCcEEEEEEeec
Confidence            3499999999999999999999999999864

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=90.57  E-value=0.1  Score=55.08  Aligned_cols=26  Identities=23%  Similarity=0.439  Sum_probs=22.1

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +..++.|+|++||||||+.+.++--.
T Consensus        25 ~Ge~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           25 SGEYFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCccHHHHHHHHHcCC
Confidence            34678999999999999999998543

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=90.47  E-value=0.13  Score=47.42  Aligned_cols=22  Identities=27%  Similarity=0.409  Sum_probs=19.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      -|+++|.+|+|||||..++...
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            3789999999999999998753

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=90.35  E-value=0.13  Score=54.91  Aligned_cols=26  Identities=23%  Similarity=0.407  Sum_probs=22.1

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      ...++.|+|++||||||+.+.++--.
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           28 DGEFMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence            34678999999999999999998543

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=90.30  E-value=0.13  Score=54.02  Aligned_cols=26  Identities=23%  Similarity=0.502  Sum_probs=22.5

Q ss_pred             ccEEEEE--EccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIM--VGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvL--vG~PGSGKSTlAr~Lak~~   44 (636)
                      .+..+++  .|+||+||||+++.+++..
T Consensus        49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~   76 (412)
T 1w5s_A           49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV   76 (412)
T ss_dssp             CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence            5667888  9999999999999998765

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=90.22  E-value=0.2  Score=48.25  Aligned_cols=26  Identities=27%  Similarity=0.257  Sum_probs=22.6

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +..+++++|++||||||.+-.++.++
T Consensus         7 ~g~i~v~~G~mgsGKTT~ll~~a~r~   32 (191)
T 1xx6_A            7 HGWVEVIVGPMYSGKSEELIRRIRRA   32 (191)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            34799999999999999999888765

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=90.21  E-value=0.19  Score=47.16  Aligned_cols=24  Identities=42%  Similarity=0.508  Sum_probs=21.0

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ..-|+++|.+|+|||||..++...
T Consensus        14 ~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           14 LHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            456899999999999999999854

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=90.20  E-value=0.15  Score=54.79  Aligned_cols=24  Identities=38%  Similarity=0.483  Sum_probs=21.2

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMR   42 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak   42 (636)
                      +..++.|+|++||||||+.+.|+.
T Consensus        46 ~Ge~~~llGpsGsGKSTLLr~iaG   69 (390)
T 3gd7_A           46 PGQRVGLLGRTGSGKSTLLSAFLR   69 (390)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhC
Confidence            446889999999999999999875

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=90.19  E-value=0.19  Score=46.65  Aligned_cols=25  Identities=20%  Similarity=0.367  Sum_probs=21.7

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ...-|+++|.+|+|||||..+|...
T Consensus        15 ~~~ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           15 YLFKLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            3457899999999999999999864

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=90.15  E-value=0.16  Score=46.62  Aligned_cols=24  Identities=21%  Similarity=0.299  Sum_probs=20.7

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ..-|+++|.+|+|||||..++...
T Consensus         5 ~~~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            5 AIKCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcC
Confidence            346899999999999999999753

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=90.11  E-value=0.21  Score=46.74  Aligned_cols=25  Identities=28%  Similarity=0.410  Sum_probs=21.7

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      +..-|+++|.+|+|||||..++...
T Consensus        19 ~~~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           19 PELKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcC
Confidence            4567899999999999999988764

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=90.10  E-value=0.14  Score=57.94  Aligned_cols=25  Identities=28%  Similarity=0.531  Sum_probs=22.6

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ..++|+|+||+||||+|+.++...+
T Consensus        61 ~~vll~Gp~GtGKTtlar~ia~~l~   85 (604)
T 3k1j_A           61 RHVLLIGEPGTGKSMLGQAMAELLP   85 (604)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred             CEEEEEeCCCCCHHHHHHHHhccCC
Confidence            4689999999999999999998875

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=90.08  E-value=0.17  Score=49.46  Aligned_cols=25  Identities=28%  Similarity=0.582  Sum_probs=21.6

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      .+.-|+|+|.+|+|||||...|...
T Consensus        28 ~~~~i~lvG~~g~GKStlin~l~g~   52 (239)
T 3lxx_A           28 SQLRIVLVGKTGAGKSATGNSILGR   52 (239)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CceEEEEECCCCCCHHHHHHHHcCC
Confidence            3467899999999999999998854

>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle regulation; 1.70A {Streptococcus mutans}

Probab=90.05  E-value=0.2  Score=47.71  Aligned_cols=31  Identities=13%  Similarity=0.131  Sum_probs=28.8

Q ss_pred             CCeEEEcCcEEEeccCCCCCcccccccCCCC
Q 006654          576 DDLLEISDDVVVLNDLYPKVHPSDNLPPGTL  606 (636)
Q Consensus       576 ~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~~  606 (636)
                      ..+||-|+.++++-|.+|.+..|+||+||.-
T Consensus        50 ~~iV~e~e~~~afld~~P~~pgH~LVIPkrH   80 (173)
T 3l7x_A           50 SSKVYEDEDVLAFLDISQATKGHTLVIPKEH   80 (173)
T ss_dssp             CCEEEECSSEEEEECTTCSSTTCEEEEESSC
T ss_pred             ceEEEECCCEEEEEcCCCCCCcEEEEEeccc
Confidence            3599999999999999999999999999965

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=89.94  E-value=0.13  Score=56.98  Aligned_cols=24  Identities=21%  Similarity=0.349  Sum_probs=0.0

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHH
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVM   41 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~La   41 (636)
                      .+..++.|+|++|||||||++.++
T Consensus        37 ~~Ge~~~l~G~nGsGKSTL~~~~l   60 (525)
T 1tf7_A           37 PIGRSTLVSGTSGTGKTLFSIQFL   60 (525)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHH

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=89.90  E-value=0.19  Score=46.51  Aligned_cols=25  Identities=20%  Similarity=0.396  Sum_probs=21.3

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHH
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMR   42 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak   42 (636)
                      .+..-|+++|.+|+|||||..++..
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~   40 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNG   40 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhc
Confidence            3556789999999999999999874

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=89.90  E-value=0.2  Score=46.46  Aligned_cols=26  Identities=27%  Similarity=0.351  Sum_probs=22.3

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      .+..-|+++|.+|+|||||..++...
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcC
Confidence            45667899999999999999999843

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=89.89  E-value=0.11  Score=55.04  Aligned_cols=26  Identities=23%  Similarity=0.356  Sum_probs=22.2

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      ...++.|+|++||||||+.+.++--.
T Consensus        30 ~Ge~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           30 NGERFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            34688999999999999999988543

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=89.87  E-value=0.19  Score=46.00  Aligned_cols=25  Identities=20%  Similarity=0.262  Sum_probs=21.3

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      +..-|+++|.+|+|||||..++...
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            3456899999999999999999854

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=89.86  E-value=0.18  Score=47.44  Aligned_cols=25  Identities=20%  Similarity=0.356  Sum_probs=20.6

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ++.-|+++|.||+||||+.+++...
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            4456899999999999999999863

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=89.86  E-value=0.21  Score=46.50  Aligned_cols=25  Identities=16%  Similarity=0.359  Sum_probs=21.5

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      +..-|+++|.+|+|||||..++...
T Consensus        19 ~~~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcC
Confidence            3457899999999999999999754

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=89.86  E-value=0.48  Score=62.11  Aligned_cols=85  Identities=14%  Similarity=-0.019  Sum_probs=55.9

Q ss_pred             CccchhhhhhhccccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEE
Q 006654            3 TDIDDTCKAKDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVF   82 (636)
Q Consensus         3 ~~~~~~~~~~~~~~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VI   82 (636)
                      +.+.+.|+......-....=+.+.||||+|||++++.|++.+|+++.+++-+.-.     ....+......++..|.-++
T Consensus       628 TPltdr~~~tl~~Al~~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~l-----d~~~lg~~~~g~~~~Gaw~~  702 (2695)
T 4akg_A          628 TPLLLIGFATLTDSLHQKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSF-----DYQVLSRLLVGITQIGAWGC  702 (2695)
T ss_dssp             CHHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSC-----CHHHHHHHHHHHHHHTCEEE
T ss_pred             cHHHHHHHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCC-----ChhHhhHHHHHHHhcCCEee
Confidence            3455666665443333333456899999999999999999999888777643211     22233344455567777778


Q ss_pred             EeCCCCCHHH
Q 006654           83 LDRCNLEREQ   92 (636)
Q Consensus        83 ID~tn~~~~~   92 (636)
                      +|..|+....
T Consensus       703 ~DE~nr~~~e  712 (2695)
T 4akg_A          703 FDEFNRLDEK  712 (2695)
T ss_dssp             EETTTSSCHH
T ss_pred             ehhhhhcChH
Confidence            8888876643

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=89.81  E-value=0.1  Score=54.52  Aligned_cols=124  Identities=15%  Similarity=0.110  Sum_probs=60.5

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCC--CeEEeeh-hhhcC----CC---C--CcHHHHHHHHHHHHh-CCCeEEEeCC
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSAR--PWARICQ-DTINK----GK---S--GTKVQCLTSASSALK-KGKSVFLDRC   86 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~--~~~~Is~-D~ir~----~~---~--~~~~~~~~~~~~~L~-~G~~VIID~t   86 (636)
                      ..+++++|++||||||+.+.|+.....  ..+.++. +.+.-    ..   .  +...+ ...+.++|. +..-+|+|- 
T Consensus       171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~-r~~la~aL~~~p~ilildE-  248 (330)
T 2pt7_A          171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITS-ADCLKSCLRMRPDRIILGE-  248 (330)
T ss_dssp             TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCH-HHHHHHHTTSCCSEEEECC-
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhH-HHHHHHHhhhCCCEEEEcC-
Confidence            457899999999999999999876542  2344432 22211    00   0  11111 233344554 444567776 


Q ss_pred             CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHh
Q 006654           87 NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ  146 (636)
Q Consensus        87 n~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~  146 (636)
                      +...+....+..+...+..+.++.=+.+......|+..-..-.. ....++.+.++++..
T Consensus       249 ~~~~e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~-~~~~~~~~~i~~~i~  307 (330)
T 2pt7_A          249 LRSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNS-AARNIKFESLIEGFK  307 (330)
T ss_dssp             CCSTHHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSG-GGTTSCHHHHHHHHH
T ss_pred             CChHHHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCc-ccCCCCHHHHHHHHH
Confidence            44444444343442222222222223445555666653322100 001466666666654

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=89.80  E-value=0.21  Score=46.79  Aligned_cols=25  Identities=20%  Similarity=0.453  Sum_probs=21.9

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      +..-|+++|.+|+|||||..++...
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            4567899999999999999999864

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=89.77  E-value=0.2  Score=46.75  Aligned_cols=26  Identities=19%  Similarity=0.323  Sum_probs=22.5

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      .+..-|+++|.+|+|||||..++...
T Consensus        21 ~~~~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           21 KKALKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeeEEEEECcCCCCHHHHHHHHhcC
Confidence            34567999999999999999999864

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=89.75  E-value=0.19  Score=46.47  Aligned_cols=27  Identities=19%  Similarity=0.214  Sum_probs=21.7

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ...-|+++|.+|+|||||.+.+...+.
T Consensus        13 ~~~ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           13 INFKIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             cccEEEEECCCCCCHHHHHHHHHhhcc
Confidence            345689999999999999987765543

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=89.67  E-value=0.22  Score=46.59  Aligned_cols=25  Identities=20%  Similarity=0.446  Sum_probs=21.7

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ...-|+++|.+|+|||||..++...
T Consensus        20 ~~~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           20 LEVNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHhC
Confidence            4467899999999999999999864

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=89.66  E-value=0.22  Score=46.46  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=21.6

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ...-|+++|.+|+|||||..++...
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           20 YLFKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcC
Confidence            4457899999999999999999854

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=89.66  E-value=0.17  Score=52.05  Aligned_cols=25  Identities=24%  Similarity=0.510  Sum_probs=21.8

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ..++.++|++||||||+.+.|. ...
T Consensus       165 G~i~~l~G~sG~GKSTLln~l~-~~~  189 (302)
T 2yv5_A          165 GFICILAGPSGVGKSSILSRLT-GEE  189 (302)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence            3578999999999999999999 543

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=89.66  E-value=0.21  Score=46.99  Aligned_cols=25  Identities=24%  Similarity=0.501  Sum_probs=21.3

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      +..-|+++|.+|+|||||..++...
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhC
Confidence            4567899999999999999999754

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=89.65  E-value=0.22  Score=46.47  Aligned_cols=25  Identities=28%  Similarity=0.477  Sum_probs=21.6

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      +..-|+++|.+|+|||||..++...
T Consensus        21 ~~~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           21 EEMELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CccEEEEECCCCCCHHHHHHHHHcC
Confidence            3457899999999999999999854

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=89.64  E-value=0.21  Score=47.74  Aligned_cols=25  Identities=16%  Similarity=0.361  Sum_probs=22.0

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ...-|+++|.+|+|||||.+++...
T Consensus        27 ~~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           27 VKCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcC
Confidence            4567899999999999999999864

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=89.64  E-value=0.22  Score=47.03  Aligned_cols=24  Identities=17%  Similarity=0.342  Sum_probs=21.3

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ..-|+++|.+|+|||||..+|...
T Consensus        24 ~~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           24 YRKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhC
Confidence            456899999999999999999864

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=89.62  E-value=0.19  Score=46.90  Aligned_cols=26  Identities=15%  Similarity=0.347  Sum_probs=22.2

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      ...-|+++|.+|+|||||..++....
T Consensus        22 ~~~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           22 YMFKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             ECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eeeEEEEECCCCcCHHHHHHHHhcCC
Confidence            34578999999999999999998654

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=89.61  E-value=0.21  Score=46.31  Aligned_cols=24  Identities=21%  Similarity=0.505  Sum_probs=21.3

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ..-|+++|.+|+|||||..+|...
T Consensus        15 ~~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           15 TLKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            457899999999999999999864

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=89.59  E-value=0.23  Score=46.19  Aligned_cols=25  Identities=16%  Similarity=0.345  Sum_probs=21.6

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ...-|+++|.+|+|||||..+|...
T Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           21 YMFKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcC
Confidence            3457899999999999999999864

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=89.58  E-value=0.2  Score=46.68  Aligned_cols=26  Identities=31%  Similarity=0.442  Sum_probs=21.1

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHH
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMR   42 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak   42 (636)
                      ...+.-|+++|.+|+|||||..++..
T Consensus        14 ~~~~~ki~v~G~~~~GKSsl~~~l~~   39 (199)
T 4bas_A           14 SKTKLQVVMCGLDNSGKTTIINQVKP   39 (199)
T ss_dssp             --CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhc
Confidence            34556789999999999999999864

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=89.50  E-value=0.19  Score=47.63  Aligned_cols=24  Identities=21%  Similarity=0.343  Sum_probs=20.4

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMR   42 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak   42 (636)
                      ++.-|+++|.+|+||||+.+++..
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhc
Confidence            445689999999999999999863

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=89.43  E-value=0.18  Score=47.39  Aligned_cols=24  Identities=17%  Similarity=0.402  Sum_probs=20.8

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ..-|+++|.+|+|||||..+|...
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A            8 MFKILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            456899999999999999998754

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=89.41  E-value=0.2  Score=45.81  Aligned_cols=24  Identities=21%  Similarity=0.408  Sum_probs=21.1

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ..-|+++|.+|+|||||..++...
T Consensus         7 ~~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            7 ELRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            456899999999999999999864

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=89.40  E-value=0.18  Score=53.48  Aligned_cols=24  Identities=25%  Similarity=0.447  Sum_probs=20.9

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ..++.|+|+||+|||||.+.|...
T Consensus       215 G~~~~lvG~sG~GKSTLln~L~g~  238 (358)
T 2rcn_A          215 GRISIFAGQSGVGKSSLLNALLGL  238 (358)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHCC
T ss_pred             CCEEEEECCCCccHHHHHHHHhcc
Confidence            357899999999999999999854

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=89.35  E-value=0.2  Score=47.57  Aligned_cols=25  Identities=28%  Similarity=0.397  Sum_probs=20.6

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      +..-|+++|.+|+|||||..++...
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3456899999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	636
d1yj5a2	172	c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' p	4e-17
d1vhua_	192	c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeo	2e-09
d2acfa1	168	c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SA	7e-09
d1njra_	264	c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker'	1e-08
d1ly1a_	152	c.37.1.1 (A:) Polynucleotide kinase, kinase domain	2e-07
d1yd9a1	188	c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Ratt	1e-06
d1spva_	172	c.50.1.2 (A:) Hypothetical protein YmbD {Escherich	3e-06
d1qhxa_	178	c.37.1.3 (A:) Chloramphenicol phosphotransferase {	3e-04
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	3e-04
d2fg1a1	154	c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Ba	0.002

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.2 bits (189), Expect = 4e-17
 Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 9/143 (6%)

Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSV 81
           +V+ VG PG+GKSTF +  +   +  +  + +DT+         +C++S  +AL++GK V
Sbjct: 16  VVVAVGFPGAGKSTFIQEHLV--SAGYVHVNRDTLGS-----WQRCVSSCQAALRQGKRV 68

Query: 82  FLDRCNLEREQRTDFVKLG-GPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAV 140
            +D  N +   R  +++      V           +     +  R E         +  V
Sbjct: 69  VIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFR-EMTDPSHAPVSDMV 127

Query: 141 VNRMLQKKELPKLSEGFSRITLC 163
           +    ++ E P L+EGF  I   
Sbjct: 128 MFSYRKQFEPPTLAEGFLEILEI 150

>d1vhua_ c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein AF1521
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 55.5 bits (133), Expect = 2e-09
 Identities = 34/138 (24%), Positives = 48/138 (34%), Gaps = 27/138 (19%)

Query: 337 QKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVA 396
           +  +         GDIT+           I NAAN RL+  GGGV  AI  A      + 
Sbjct: 6   EAKVGDITLKLAQGDITQY------PAKAIVNAANKRLE-HGGGVAYAIAKACAGDAGLY 58

Query: 397 TAERAKSLY---------PGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDG 447
           T    K++           G  V+ P  +        G+ +V H +GP  +      L  
Sbjct: 59  TEISKKAMREQFGRDYIDHGEVVVTPAMNLEER----GIKYVFHTVGPICSGMWSEEL-- 112

Query: 448 DYVKGCEILRKAYTSLFE 465
                 E L KA+    E
Sbjct: 113 -----KEKLYKAFLGPLE 125

>d2acfa1 c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SARS coronavirus [TaxId: 227859]} Length = 168

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Replicase polyprotein 1ab
species: SARS coronavirus [TaxId: 227859]

 Score = 53.1 bits (127), Expect = 7e-09
 Identities = 29/108 (26%), Positives = 39/108 (36%), Gaps = 8/108 (7%)

Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNS 409
            DI +          VI NAAN  LK  GGGV  A+  A   A++  + +  K   P   
Sbjct: 20  VDIVKEAQSAN--PMVIVNAANIHLK-HGGGVAGALNKATNGAMQKESDDYIKLNGPLTV 76

Query: 410 VIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILR 457
               L S   L         +HV+GPN+N      L     +      
Sbjct: 77  GGSCLLSGHNLA-----KKCLHVVGPNLNAGEDIQLLKAAYENFNSQD 119

>d1njra_ c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 264

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein Ymr087W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.3 bits (130), Expect = 1e-08
 Identities = 22/161 (13%), Positives = 46/161 (28%), Gaps = 13/161 (8%)

Query: 315 RLVLVDLTQG------SKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIAN 368
           R++L D  +         I            I+     + +  + +           I +
Sbjct: 3   RIILCDTNEVVTNLWQESIPHAYIQNDKYLCIHHGHLQSLMDSMRKGDAIHHGHSYAIVS 62

Query: 369 AANWRLKPGGGGVNAAIFSAAGPAL---EVATAERAKSLYPGNSVIVP---LPSTSPLCG 422
             N      GGG + A+++  G              +    G++ +V          +  
Sbjct: 63  PGNSYGY-LGGGFDKALYNYFGGKPFETWFRNQLGGRYHTVGSATVVDLQRCLEEKTIEC 121

Query: 423 REGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSL 463
           R+G+ ++IHV                   G E +  A  + 
Sbjct: 122 RDGIRYIIHVPTVVAPSAPIFNPQNPLKTGFEPVFNAMWNA 162

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

 Score = 48.6 bits (114), Expect = 2e-07
 Identities = 25/147 (17%), Positives = 42/147 (28%), Gaps = 25/147 (17%)

Query: 22  LVIMVGAPGSGKSTFCEHV------------------MRSSARPWARICQDTINKGKSGT 63
           +++ +G PGSGKST+                      + +                 +G 
Sbjct: 4   IILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGM 63

Query: 64  KVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGP-EVDVHAVVLDLPAKLCISRS 122
           +     S        K V +   NL  E+R  +          V   V D+P    + R+
Sbjct: 64  QFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRN 123

Query: 123 VKRIEHEGNLQGGKAAAVVNRMLQKKE 149
            KR              V+  M +   
Sbjct: 124 SKRGTKAVP------IDVLRSMYKSMR 144

>d1yd9a1 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 188

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Histone macro-H2a1.1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.4 bits (112), Expect = 1e-06
 Identities = 20/123 (16%), Positives = 32/123 (26%), Gaps = 21/123 (17%)

Query: 343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAK 402
           +K      DI  +        + + +  N      GG V + +    G     A  E  K
Sbjct: 14  QKLQVVQADIASI------DSDAVVHPTNTDFY-IGGEVGSTLEKKGGKEFVEAVLELRK 66

Query: 403 SLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTS 462
              P       + +   L        VIH   P     +            E+L K   +
Sbjct: 67  KNGPLEVAGAAVSAGHGL----PAKFVIHCNSPVWGSDKC----------EELLEKTVKN 112

Query: 463 LFE 465
              
Sbjct: 113 CLA 115

>d1spva_ c.50.1.2 (A:) Hypothetical protein YmbD {Escherichia coli [TaxId: 562]} Length = 172

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein YmbD
species: Escherichia coli [TaxId: 562]

 Score = 45.9 bits (108), Expect = 3e-06
 Identities = 36/116 (31%), Positives = 48/116 (41%), Gaps = 19/116 (16%)

Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNS 409
           GDIT+L        +VI NAAN  L  GGGGV+ AI  AAGPAL  A  +  +      +
Sbjct: 8   GDITKL------AVDVIVNAANPSLM-GGGGVDGAIHRAAGPALLDACLKVRQQQGDCPT 60

Query: 410 VIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFE 465
                     L G      V+H +GP       N          ++L+ AY +   
Sbjct: 61  GHA----VITLAGDLPAKAVVHTVGPVWRGGEQNE--------DQLLQDAYLNSLR 104

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 8/41 (19%), Positives = 16/41 (39%)

Query: 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG 62
          ++I+ G   +GKS     +      PW     D++ +    
Sbjct: 5  MIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPL 45

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 39.5 bits (91), Expect = 3e-04
 Identities = 20/124 (16%), Positives = 32/124 (25%), Gaps = 16/124 (12%)

Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKV---------------- 65
           ++++ G PGSGKST  E +      P      D +       ++                
Sbjct: 6   ILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQ 65

Query: 66  QCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKR 125
                A    K+G  V LD                     V         + C+ R    
Sbjct: 66  IAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDS 125

Query: 126 IEHE 129
           +   
Sbjct: 126 LSDP 129

>d2fg1a1 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 154

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein BT1257
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 16/119 (13%), Positives = 28/119 (23%), Gaps = 18/119 (15%)

Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNS 409
           GD T     G     VI +  N      G G   A+        E               
Sbjct: 7   GDATAPIGSG---VKVITHICNDIGG-WGKGFVLALSKKWKMPEEAYRQWYKSQEEFTLG 62

Query: 410 VIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFL 468
            +  +   + L       +V +++G +   +              I   A     +   
Sbjct: 63  AVQFVNVENKL-------YVANMIGQHGIYKDSK-------GLPPIRYDAVRQCLKEVA 107

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	636
d1yd9a1	188	Histone macro-H2a1.1 {Rat (Rattus norvegicus) [Tax	99.92
d1spva_	172	Hypothetical protein YmbD {Escherichia coli [TaxId	99.91
d1vhua_	192	Hypothetical protein AF1521 {Archaeon Archaeoglobu	99.9
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	99.88
d2acfa1	168	Replicase polyprotein 1ab {SARS coronavirus [TaxId	99.86
d1njra_	264	Hypothetical protein Ymr087W {Baker's yeast (Sacch	99.72
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	99.68
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	99.55
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	99.54
d2fg1a1	154	Hypothetical protein BT1257 {Bacteroides thetaiota	99.45
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	99.42
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	99.41
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.34
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	99.33
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	99.29
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	99.26
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	99.25
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	99.23
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	99.23
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	99.23
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.2
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	99.19
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	99.15
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	99.14
d1yd9a1	188	Histone macro-H2a1.1 {Rat (Rattus norvegicus) [Tax	99.11
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	99.11
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	99.09
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	99.05
d1spva_	172	Hypothetical protein YmbD {Escherichia coli [TaxId	99.01
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.99
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	98.96
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	98.95
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.93
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	98.87
d1vhua_	192	Hypothetical protein AF1521 {Archaeon Archaeoglobu	98.87
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	98.72
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	98.69
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	98.63
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.63
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	98.62
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	98.58
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.46
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	98.46
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	98.44
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	98.37
d2acfa1	168	Replicase polyprotein 1ab {SARS coronavirus [TaxId	98.36
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	98.35
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	98.31
d1njra_	264	Hypothetical protein Ymr087W {Baker's yeast (Sacch	98.28
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	98.22
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	98.21
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	98.19
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	98.09
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	98.05
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	98.04
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.86
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.84
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.83
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.8
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.8
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	97.79
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.74
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.63
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	97.62
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	97.57
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.44
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.41
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.4
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.4
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.36
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.32
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.28
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.26
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	97.25
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.17
d1okkd2	207	GTPase domain of the signal recognition particle r	97.12
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.09
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.09
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	97.02
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.94
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	96.92
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.91
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.85
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	96.83
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.68
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.67
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.5
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.45
d2fg1a1	154	Hypothetical protein BT1257 {Bacteroides thetaiota	96.39
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	96.3
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.29
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.27
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.18
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.06
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.04
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.0
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	95.99
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.8
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.73
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	95.68
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.43
d1kpfa_	111	Protein kinase C inhibitor-1, PKCI-1 {Human (Homo	95.43
d2axpa1	164	Hypothetical protein YorR {Bacillus subtilis [TaxI	95.37
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	95.34
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.24
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.13
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.07
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	95.0
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	94.66
d1xqua_	113	Putative hydrolase {Clostridium thermocellum [TaxI	94.64
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	94.59
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	94.59
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	94.56
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	94.49
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	94.4
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	94.37
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.36
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	94.2
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	93.96
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	93.79
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	93.76
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	93.74
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	93.73
d1emsa1	160	NIT-FHIT fusion protein, C-terminal domain {Nemato	93.67
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	93.47
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	93.34
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	93.31
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	93.24
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	93.2
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.18
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.15
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	93.12
d2awna2	232	Maltose transport protein MalK, N-terminal domain	93.02
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	93.01
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	93.01
d1y23a_	139	Hit {Bacillus subtilis [TaxId: 1423]}	93.0
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.98
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	92.9
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	92.88
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	92.83
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	92.8
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	92.77
d1g2912	240	Maltose transport protein MalK, N-terminal domain	92.73
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	92.73
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	92.73
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	92.7
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	92.7
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	92.69
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	92.68
d1vlra1	192	mRNA decapping enzyme DcpS C-terminal domain {Mous	92.67
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	92.62
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	92.6
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	92.58
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	92.58
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	92.52
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	92.51
d1fita_	146	FHIT (fragile histidine triad protein) {Human (Hom	92.41
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	92.4
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	92.34
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	92.3
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	92.25
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	92.11
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.05
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	92.04
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	92.03
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	91.95
d1nrjb_	209	Signal recognition particle receptor beta-subunit	91.86
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	91.67
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	91.59
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	91.57
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	91.54
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	91.41
d2fh5b1	207	Signal recognition particle receptor beta-subunit	91.39
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	91.39
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	91.24
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	91.2
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	91.14
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	91.09
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	91.05
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	91.01
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	90.91
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	90.85
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	90.62
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	90.58
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	90.57
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	90.51
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	90.5
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	90.39
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	90.37
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	90.19
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	90.14
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	90.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	90.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	89.87
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	89.86
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	89.84
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	89.81
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	89.71
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	89.7
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	89.67
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	89.66
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	89.61
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	89.58
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	89.52
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	89.48
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	89.46
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	89.4
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	89.37
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	89.25
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	89.23
d1tuea_	205	Replication protein E1 helicase domain {Human papi	89.21
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	89.13
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	89.12
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	89.09
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	88.92
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	88.91
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	88.91
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	88.81
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	88.72
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	88.54
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	88.38
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	88.27
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	88.15
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	88.07
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	88.05
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	87.92
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	87.76
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	87.24
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	87.23
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	87.09
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	86.9
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	86.89
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	86.8
d2oika1	139	Histidine triad protein Mfla2506 {Methylobacillus	86.31
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	86.21
d1guqa2	171	Galactose-1-phosphate uridylyltransferase {Escheri	85.97
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	85.62
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	85.18
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	85.11
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	84.8
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	84.02
d1z84a2	156	Galactose-1-phosphate uridylyltransferase {Thale c	84.01
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	83.94
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	83.81
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	83.67
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	83.48
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	82.82
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	82.58
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	82.55
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	82.14
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	80.65
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	80.16

>d1yd9a1 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Histone macro-H2a1.1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=4e-25  Score=214.02  Aligned_cols=120  Identities=18%  Similarity=0.125  Sum_probs=106.7

Q ss_pred             hcCCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHh---cCCCCCCcEEEecCC
Q 006654          339 HINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAER---AKSLYPGNSVIVPLP  415 (636)
Q Consensus       339 ~~~~~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~---~~~~~~G~avvT~l~  415 (636)
                      .+.+.+|.|++|||+++.      +|||||+||+.|. ++||+++||+++||++|++||+++   .+++.+|++++|+  
T Consensus        10 ~~~~~~i~i~~GDIt~~~------~DaIVn~an~~l~-~~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~~g~~~vT~--   80 (188)
T d1yd9a1          10 LFLGQKLQVVQADIASID------SDAVVHPTNTDFY-IGGEVGSTLEKKGGKEFVEAVLELRKKNGPLEVAGAAVSA--   80 (188)
T ss_dssp             CTTSCEEEEECSCGGGCC------CSEEEEECCTTCC-CCSHHHHHHHHHHHHHHHHHHHHHHHHHCSCCTTCEEEEE--
T ss_pred             cccCCEEEEEeCCcCcCC------CCEEEECCCccCC-CCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCeeecc--
Confidence            467889999999999998      9999999999999 899999999999999999999876   3789999999998  


Q ss_pred             CCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCC
Q 006654          416 STSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCN  482 (636)
Q Consensus       416 ~~~~~~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~  482 (636)
                           .+.|+|++|||+|||.|+..          ...++|++||++||+.|     .|||||+||.|....
T Consensus        81 -----~~~L~~k~IiH~v~P~~~~~----------~~~~~L~~~~~~~L~~a~~~~~~SIafP~igtG~~g~  137 (188)
T d1yd9a1          81 -----GHGLPAKFVIHCNSPVWGSD----------KCEELLEKTVKNCLALADDRKLKSIAFPSIGSGRNGF  137 (188)
T ss_dssp             -----CTTSSSSEEEEECCCCTTST----------THHHHHHHHHHHHHHHHHHTTCSEEEECCCSBSTTCB
T ss_pred             -----cCCCCceEEeeeccccCCCc----------chHHHHHHHHHHHHHHHHHcCCCeEEeccccCCCCCC
Confidence                 34589999999999999753          34689999999999976     599999999775543

>d1spva_ c.50.1.2 (A:) Hypothetical protein YmbD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein YmbD
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=1.6e-24  Score=206.44  Aligned_cols=119  Identities=32%  Similarity=0.384  Sum_probs=104.5

Q ss_pred             eEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCcEEEecCCCCCC
Q 006654          343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPLPSTSP  419 (636)
Q Consensus       343 ~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~---~~~~~G~avvT~l~~~~~  419 (636)
                      .+|.|++|||+++.      +||||||||+.|. ++||+++||+++||++++++|+++.   +++++|++++|+      
T Consensus         1 ~kI~iv~GDI~~~~------~DaIVn~~n~~l~-~~~gv~~ai~~~~G~~~~~~~~~~~~~~g~~~~g~~~~T~------   67 (172)
T d1spva_           1 TRIHVVQGDITKLA------VDVIVNAANPSLM-GGGGVDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITL------   67 (172)
T ss_dssp             CCEEEEESCGGGCC------CSEEEEECCTTCS-CCSHHHHHHHHHHCHHHHHHHHHHHHHHCSCCTTCEEEEC------
T ss_pred             CeEEEEeCccCcCC------CCEEEECCCcccc-CCCcHHHHHHHHcCCchHHHHHHHHHHhCCCCCCCEEEEE------
Confidence            36899999999997      9999999999999 8999999999999999999998863   789999999999      


Q ss_pred             CCCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCCCCCc
Q 006654          420 LCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSKGCNE  483 (636)
Q Consensus       420 ~~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~~~~~  483 (636)
                       .+.|+|++|||+|+|.|+....        ...++|++||++||+.|     .|||||.||.+....+
T Consensus        68 -~~~l~~k~IiH~v~P~~~~~~~--------~~~~~l~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p  127 (172)
T d1spva_          68 -AGDLPAKAVVHTVGPVWRGGEQ--------NEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYP  127 (172)
T ss_dssp             -CTTSSSSEEEEECCCCCSSSSS--------SHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCC
T ss_pred             -cCCCCCcEEEEeccccccCCch--------HHHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCC
Confidence             3458899999999999976432        45789999999999976     5999999997755443

>d1vhua_ c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein AF1521
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.90  E-value=1.7e-24  Score=210.08  Aligned_cols=127  Identities=26%  Similarity=0.254  Sum_probs=103.8

Q ss_pred             hhhhcCCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHH--HHHHHh-------cCCCCC
Q 006654          336 AQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALE--VATAER-------AKSLYP  406 (636)
Q Consensus       336 ~~~~~~~~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~--~e~~~~-------~~~~~~  406 (636)
                      +++.+++.+|+|++||||++.      +||||||||+.|. ++||+++||++++|++++  .++...       .+++++
T Consensus         5 ~~~~~~~~~i~i~~GdIt~~~------~DaIVN~aN~~l~-~~gGv~~aI~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   77 (192)
T d1vhua_           5 FEAKVGDITLKLAQGDITQYP------AKAIVNAANKRLE-HGGGVAYAIAKACAGDAGLYTEISKKAMREQFGRDYIDH   77 (192)
T ss_dssp             EEEEETTEEEEEEESCGGGSC------CSEEEEEECTTCC-CCSHHHHHHHHHHHSSHHHHHHHHHHHHHHHHSSSCCCT
T ss_pred             EEEEECCEEEEEEeccCCccc------CCEEEECcCcccC-CCCcHHHHHHHhhCchhHhHHHHHHHHHHHhhcCCCCCC
Confidence            567889999999999999998      9999999999999 999999999999997533  222221       267999


Q ss_pred             CcEEEecCCCCCCCCCC--CCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH-----HHhhccccCCCC
Q 006654          407 GNSVIVPLPSTSPLCGR--EGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLSK  479 (636)
Q Consensus       407 G~avvT~l~~~~~~~~~--l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~~~~  479 (636)
                      |++++|+      +++.  .+|+||||+|||.|.....       .+..+.|++||++||+.|     .|||||+||.|.
T Consensus        78 G~~~~T~------~~~L~~~~~k~ViH~v~P~~~~~~~-------~~~~~~L~~~~~~~L~~A~~~~~~SIA~P~lgtG~  144 (192)
T d1vhua_          78 GEVVVTP------AMNLEERGIKYVFHTVGPICSGMWS-------EELKEKLYKAFLGPLEKAEEMGVESIAFPAVSAGI  144 (192)
T ss_dssp             TCCEEEE------CGGGGGGTCCEEEEEECCCCTTCCC-------HHHHHHHHHHHHHHHHHHHHHTCCEEEECCTTSST
T ss_pred             CcEEEEe------cccCCcccccEEEEEeeecccCCCc-------chhHHHHHHHHHHHHHHHHHcCCcEEEecCccCCC
Confidence            9999999      2221  2589999999999986532       356789999999999986     499999999876


Q ss_pred             CCC
Q 006654          480 GCN  482 (636)
Q Consensus       480 ~~~  482 (636)
                      +-.
T Consensus       145 ~g~  147 (192)
T d1vhua_         145 YGC  147 (192)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            543

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=1e-22  Score=193.95  Aligned_cols=141  Identities=23%  Similarity=0.345  Sum_probs=127.0

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHH
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTD   95 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn~~~~~R~~   95 (636)
                      ..+.|.+|+|+|+|||||||||++++...+  +.+|+.|.++     ++..+...+..+|.+|..||+|+||.+..+|..
T Consensus        10 ~~~~p~liil~G~pGsGKST~a~~l~~~~~--~~~i~~D~~~-----~~~~~~~~~~~~l~~g~~vIiD~t~~~~~~R~~   82 (172)
T d1yj5a2          10 LSPNPEVVVAVGFPGAGKSTFIQEHLVSAG--YVHVNRDTLG-----SWQRCVSSCQAALRQGKRVVIDNTNPDVPSRAR   82 (172)
T ss_dssp             SCSSCCEEEEECCTTSSHHHHHHHHTGGGT--CEEEEHHHHC-----SHHHHHHHHHHHHHTTCCEEEESCCCSHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHhcC--CEEEchHHHH-----HHHHHHHHHHHHHHCCCCceeeCcCCCHHHHHH
Confidence            346799999999999999999999998887  8899999985     566788999999999999999999999999999


Q ss_pred             HHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCccEEEEeC
Q 006654           96 FVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQ  164 (636)
Q Consensus        96 l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd~Viii~  164 (636)
                      |+++ ++.++.+.+++|++|.++|.+|+..|..+... ...++..++.+|.++|++|...|||+.|+.++
T Consensus        83 ~~~~a~~~~~~~~~v~l~~~~e~~~~Rn~~R~~~~~~-~~~v~~~~~~~~~~~fe~P~~~Egf~~i~~i~  151 (172)
T d1yj5a2          83 YIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPS-HAPVSDMVMFSYRKQFEPPTLAEGFLEILEIP  151 (172)
T ss_dssp             HHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHHCTT-CCCCCHHHHHHHHHHCCCCCGGGSCSCEEEEC
T ss_pred             HHHHHHhcCCCEEEEEeCCCHHHHHHHHHHhcccCcc-cCccHHHHHHHHHHhCCCCCcccCCcEEEEEC
Confidence            9999 89999999999999999999999999876432 23688999999999999999999999998664

>d2acfa1 c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SARS coronavirus [TaxId: 227859]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Replicase polyprotein 1ab
species: SARS coronavirus [TaxId: 227859]

Probab=99.86  E-value=5.7e-23  Score=195.36  Aligned_cols=119  Identities=24%  Similarity=0.268  Sum_probs=98.4

Q ss_pred             eEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCcEEEecCCCCCC
Q 006654          343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPLPSTSP  419 (636)
Q Consensus       343 ~~v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e~~~~~---~~~~~G~avvT~l~~~~~  419 (636)
                      .+|.|+.||||++.  ....+||||||||++|. ++|||++||+++||++|++||.++.   +++++|++++|+      
T Consensus        13 ~~v~i~~gDI~k~~--~~~~~D~IVN~aN~~l~-~~gGvs~AI~~~aG~~l~~e~~~~~~~~g~~~~G~~v~t~------   83 (168)
T d2acfa1          13 DNVAIKCVDIVKEA--QSANPMVIVNAANIHLK-HGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLS------   83 (168)
T ss_dssp             SSEEEEESCHHHHH--HHHCCSEEEEECCTTCC-CCSHHHHHHHHHTTTHHHHHHHHHHHHHCCCCTTCEEEEE------
T ss_pred             CcEEEEEcccceec--ccCCCCEEEECCCcccC-CCChHHHHHHHHhCHHHHHHHHHHHHhcCCCcCCCeEecc------
Confidence            46999999999982  00028999999999999 9999999999999999999998863   789999999998      


Q ss_pred             CCCCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhHHHhhccccCCCCCCCc
Q 006654          420 LCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNE  483 (636)
Q Consensus       420 ~~~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~siaf~~~~~~~~~~~  483 (636)
                      + +++ |++|||+|||+|....          ..++|+.||++++ .+.|||||+||.|....+
T Consensus        84 g-~~l-~k~IiH~v~P~~~~~~----------~~~ll~~~~~~~~-~~~sIA~PaigtG~~g~p  134 (168)
T d2acfa1          84 G-HNL-AKKCLHVVGPNLNAGE----------DIQLLKAAYENFN-SQDILLAPLLSAGIFGAK  134 (168)
T ss_dssp             C-TTT-CSEEEEECCCCGGGTC----------CTTHHHHHHHGGG-GSSEEEECCTTCGGGCCC
T ss_pred             C-cCc-chhheeecCCCccccc----------HHHHHHHHHHhhc-cCceEEecccccCCCCCC
Confidence            2 334 5899999999997653          2468999999864 467999999998866544

>d1njra_ c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein Ymr087W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=3.1e-18  Score=172.83  Aligned_cols=138  Identities=17%  Similarity=0.169  Sum_probs=102.5

Q ss_pred             CeEEEEEEcccceeccc-------CcccccEEEeCCCCCCcCCCChhhHHHHHhhcH-HHHHHHHHhc--CCCCCCcEEE
Q 006654          342 PKKFFTFVGDITRLYTG-------GGLCCNVIANAANWRLKPGGGGVNAAIFSAAGP-ALEVATAERA--KSLYPGNSVI  411 (636)
Q Consensus       342 ~~~v~v~~GDIt~~~~~-------~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~-~l~~e~~~~~--~~~~~G~avv  411 (636)
                      ...|.|++|+|.++...       ....+||||||||+.+. +||||++||++++|+ .||++|++..  +.+++|++++
T Consensus        29 ~~~v~i~~g~i~~l~~~~~~~~~~~~~~~~AIVnpANS~g~-mgGGvd~AI~~a~Gg~~le~~~r~~i~~~~~pvG~a~i  107 (264)
T d1njra_          29 DKYLCIHHGHLQSLMDSMRKGDAIHHGHSYAIVSPGNSYGY-LGGGFDKALYNYFGGKPFETWFRNQLGGRYHTVGSATV  107 (264)
T ss_dssp             -CCEEEEESCHHHHHHHHHTTCC----CCEEEEECCBTTCC-CCSSHHHHHHHHHTSHHHHHHHHHHTTTSCCCTTCCEE
T ss_pred             CCceEEEeCCHHHhhhhhccccccccCCCCEEEeCCCcCCC-CCccHHHHHHHhhCcHHHHHHHHHHHhhcCCCCCceEE
Confidence            34699999999776310       01247899999999999 999999999999765 5888888764  4588999999


Q ss_pred             ecC----CCCCCCCCCCCccEEEEe---cCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHh----HHHhhccccCCCCC
Q 006654          412 VPL----PSTSPLCGREGVTHVIHV---LGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEG----FLSIVRSQEKLSKG  480 (636)
Q Consensus       412 T~l----~~~~~~~~~l~~k~VIH~---VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~----a~siaf~~~~~~~~  480 (636)
                      |+.    +.++. +.+++|+||||+   |||.|.....+   ..+..+.+.|.+|++++|..    ..|||||+||+|.+
T Consensus       108 v~~g~~~~~~~~-~~nl~~kyVIHaPTMv~P~~~~~~~~---~~~~~~~~~l~~a~~~~L~a~e~~i~SIAfPaigTGvg  183 (264)
T d1njra_         108 VDLQRCLEEKTI-ECRDGIRYIIHVPTVVAPSAPIFNPQ---NPLKTGFEPVFNAMWNALMHSPKDIDGLIIPGLCTGYA  183 (264)
T ss_dssp             EEGGGGGCC-----CCTTEEEEEECCCBSCSSSCSCCTT---CHHHHTHHHHHHHHHHHHHTSCTTCSEEEECCTTCSTT
T ss_pred             eccCCccccccc-cccCCCCEEEECcccccCCCCCCCch---HHHHHHHHHHHHHHHHHHHHhhcCCCEEEeCccccCCC
Confidence            872    11122 246899999999   89988654332   12234568899999999864    57999999999988


Q ss_pred             CCcC
Q 006654          481 CNED  484 (636)
Q Consensus       481 ~~~~  484 (636)
                      ..+.
T Consensus       184 g~p~  187 (264)
T d1njra_         184 GVPP  187 (264)
T ss_dssp             CCCH
T ss_pred             CcCH
Confidence            7765

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.68  E-value=3.3e-17  Score=149.54  Aligned_cols=125  Identities=24%  Similarity=0.328  Sum_probs=99.7

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCC---------CCc-------HHHHHHHHHHHHhCC---C
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK---------SGT-------KVQCLTSASSALKKG---K   79 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~---------~~~-------~~~~~~~~~~~L~~G---~   79 (636)
                      |+.+|+|+|+|||||||+|++|++... .+.+++.|+++...         ...       .......+...++.+   .
T Consensus         1 MkklIii~G~pGsGKTTla~~L~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (152)
T d1ly1a_           1 MKKIILTIGCPGSGKSTWAREFIAKNP-GFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVK   79 (152)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHST-TEEEECHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSCC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhCC-CCEEechHHHHHHHhcccchhhhhhhhhhhHHHHHHHHHHHHHHHHhhccCC
Confidence            578999999999999999999987654 47889988875211         001       112234555555544   5


Q ss_pred             eEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcC
Q 006654           80 SVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKEL  150 (636)
Q Consensus        80 ~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~  150 (636)
                      .+|+|++++....+..+.++ +..++.+.+|++++|.++|.+|+..|..+      .++++++++|++.|+.
T Consensus        80 ~vi~d~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~------~~~~~~i~~~~~~~~~  145 (152)
T d1ly1a_          80 GVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTK------AVPIDVLRSMYKSMRE  145 (152)
T ss_dssp             EEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGGG------CCCHHHHHHHHHHHHH
T ss_pred             CcccccccCCHHHHHHHHHhhhhhccchhhhhcCCCHHHHHHHHHccCCC------CCCHHHHHHHHHHHHh
Confidence            69999999999999999999 88899999999999999999999999775      5789999999988754

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=3.1e-14  Score=131.60  Aligned_cols=145  Identities=14%  Similarity=0.138  Sum_probs=103.6

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC---------CCCcH-------HHHHHHHHHHHhCCCe
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG---------KSGTK-------VQCLTSASSALKKGKS   80 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~---------~~~~~-------~~~~~~~~~~L~~G~~   80 (636)
                      ..++.+++|+|+|||||||+|+.|++.++  +.+++.|.++..         .....       ..+...+...+..+..
T Consensus         3 ~~~~~iivl~G~~GsGKsT~a~~La~~l~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (171)
T d1knqa_           3 NHDHHIYVLMGVSGSGKSAVASEVAHQLH--AAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKV   80 (171)
T ss_dssp             CTTSEEEEEECSTTSCHHHHHHHHHHHHT--CEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHCSE
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeechhhhhHHHHhhhhccCcceehhhhHHHHHHHHHHHHHHHhccCc
Confidence            35688999999999999999999999998  677888777532         11111       1122445556677778


Q ss_pred             EEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCccEE
Q 006654           81 VFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRI  160 (636)
Q Consensus        81 VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egfd~V  160 (636)
                      ++++........|..+   +..+..+.+++|++|.+++.+|+..|..+      ..+.+.++++.+.++.|...+. + +
T Consensus        81 ~~~~~~~~~~~~~~~~---~~~~~~~~~v~l~~~~e~~~~Rl~~R~~~------~~~~~~~~~~~~~~e~~~~~e~-~-~  149 (171)
T d1knqa_          81 SLIVCSALKKHYRDLL---REGNPNLSFIYLKGDFDVIESRLKARKGH------FFKTQMLVTQFETLQEPGADET-D-V  149 (171)
T ss_dssp             EEEECCCCSHHHHHHH---HTTCTTEEEEEEECCHHHHHHHHHTSTTC------CCCHHHHHHHHHHCCCCCTTCT-T-E
T ss_pred             eEeeccchHHHHHHHH---HHhCCCceEEeecCCHHHHHHHHHhCcCC------CccHHHHHhhHHHhhCCCcccC-C-E
Confidence            8888877777666655   44455677899999999999999999765      4567888999999988876554 3 3


Q ss_pred             EEeCChhHHHHHHH
Q 006654          161 TLCQNENDVQAALD  174 (636)
Q Consensus       161 iii~~~~~vdaiv~  174 (636)
                      ++++....++++++
T Consensus       150 ~~id~~~~~e~v~~  163 (171)
T d1knqa_         150 LVVDIDQPLEGVVA  163 (171)
T ss_dssp             EEEECSSCHHHHHH
T ss_pred             EEEeCCCCHHHHHH
Confidence            34444445555554

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.54  E-value=1.3e-13  Score=131.20  Aligned_cols=113  Identities=23%  Similarity=0.421  Sum_probs=85.1

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-cC------------------CCCCcHHHHHHHHHHHH-
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSAL-   75 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r~------------------~~~~~~~~~~~~~~~~L-   75 (636)
                      ..++|.+|+++|||||||||+|+.|++.++  +.+|+.+++ +.                  +...........+...+ 
T Consensus         2 ~~~kp~iI~i~G~pGSGKsT~a~~La~~~g--~~~i~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (194)
T d1qf9a_           2 EKSKPNVVFVLGGPGSGKGTQCANIVRDFG--WVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAID   79 (194)
T ss_dssp             CCCCCEEEEEEESTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHC--CceEchhhHHHHHhhhhhhhhhhhhhHhhhccccchHHHHHHHHHHhh
Confidence            457899999999999999999999999998  788998554 31                  11111222222222333 


Q ss_pred             -hCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 006654           76 -KKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEG  130 (636)
Q Consensus        76 -~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~  130 (636)
                       ...+++|+|+++.+..++..|..+ ........+|+|++|.+++.+|+..|.....
T Consensus        80 ~~~~~~~i~dg~p~~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~R~~~~~~~~~  136 (194)
T d1qf9a_          80 ANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSG  136 (194)
T ss_dssp             TSTTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSC
T ss_pred             hhhcCCeEEEecchhhhhHHHHHhhhhhcccccEEEEeecchHHHHHHHHhhccccc
Confidence             234679999999999999988887 6666666889999999999999999876543

>d2fg1a1 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein BT1257
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.45  E-value=1e-13  Score=128.22  Aligned_cols=119  Identities=15%  Similarity=0.041  Sum_probs=87.0

Q ss_pred             EEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHH---HHHhcCCCCCCcEEEecCCCCCCCC
Q 006654          345 FFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVA---TAERAKSLYPGNSVIVPLPSTSPLC  421 (636)
Q Consensus       345 v~v~~GDIt~~~~~~~~~~daIVNaaN~~L~~~ggGVa~AI~~aaG~~l~~e---~~~~~~~~~~G~avvT~l~~~~~~~  421 (636)
                      |.+++|||++..   ..++|+|||++|..+. +|||||+||.+++|..+++.   |.+. +.+++|++++|+..      
T Consensus         2 i~~v~GDi~~~~---~~~~~~Ivh~~N~~~~-mG~GiA~ai~~~~p~~~~~~~~~~~~~-~~~~~G~~~~~~~~------   70 (154)
T d2fg1a1           2 ILYIKGDATAPI---GSGVKVITHICNDIGG-WGKGFVLALSKKWKMPEEAYRQWYKSQ-EEFTLGAVQFVNVE------   70 (154)
T ss_dssp             CEEEESCTTSCC---SSSCEEEEEEEETTCC-CCSTHHHHHHHHCSHHHHHHHHHHHHT-SSCSTTCEEEEEEE------
T ss_pred             eEEEeCccCCcC---CCCCCEEEEccCCCCc-ccchHHHHHHHHcCcHHHHHHHHhhhc-cCCCCCcEEEEECC------
Confidence            678999999853   1247999999999999 99999999999988655433   3332 67999999999821      


Q ss_pred             CCCCccEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhH----HHhhccccCCCCC
Q 006654          422 GREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF----LSIVRSQEKLSKG  480 (636)
Q Consensus       422 ~~l~~k~VIH~VgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a----~siaf~~~~~~~~  480 (636)
                         ++.+|+|.++|.+.....+   .......+.|++|+++++..+    .|||||+||.|.+
T Consensus        71 ---~~~~I~~~~~~~~~~~~~~---~~~~~~~~~l~~~l~~l~~~~~~~~~sIa~P~Ig~Gi~  127 (154)
T d2fg1a1          71 ---NKLYVANMIGQHGIYKDSK---GLPPIRYDAVRQCLKEVALFTIAHKASVHMPRIGCGLA  127 (154)
T ss_dssp             ---TTEEEEEEEEESSSSCCTT---CCCSBCHHHHHHHHHHHHHHHHHHTCEEEECCTTCSTT
T ss_pred             ---CceEEEEEEeEeCCCCCcC---CccHHHHHHHHHHHHHHHHHHHhcCcEEEeCcccCCCC
Confidence               2479999999976443211   011123567888888776543    4899999997744

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=99.42  E-value=7.3e-13  Score=121.30  Aligned_cols=109  Identities=22%  Similarity=0.216  Sum_probs=82.8

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC-------c-------HHHHHHHHHHHHhCCCeEEEe
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-------T-------KVQCLTSASSALKKGKSVFLD   84 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~-------~-------~~~~~~~~~~~L~~G~~VIID   84 (636)
                      |..+|+|+|+|||||||+|++|++.++. ..+++.|.++.....       .       ...+...+...+..+..+|+|
T Consensus         1 M~klI~i~G~~GsGKTTva~~L~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid   79 (176)
T d2bdta1           1 MKKLYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTVNFLLAQNDVVLD   79 (176)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCC-CEEEehHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence            5679999999999999999999999873 456788887643111       1       122345667778899999999


Q ss_pred             CCCCCHHHHHHHHHh--CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654           85 RCNLEREQRTDFVKL--GGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (636)
Q Consensus        85 ~tn~~~~~R~~l~~l--~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~  128 (636)
                      .+......+..+..+  ...+..+.+++|.++.+++.+|+..|...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~  125 (176)
T d2bdta1          80 YIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKD  125 (176)
T ss_dssp             SCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-
T ss_pred             cccccHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHhCCCc
Confidence            988777766655444  45566678899999999999999999763

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=3.7e-12  Score=120.77  Aligned_cols=166  Identities=14%  Similarity=0.301  Sum_probs=104.5

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhh-hcC----CCC---------------CcHHHHHHHHHHHH----
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT-INK----GKS---------------GTKVQCLTSASSAL----   75 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~-ir~----~~~---------------~~~~~~~~~~~~~L----   75 (636)
                      |.+|+|.|||||||||+|+.|+++++  +.||+.++ +|.    ...               .........+...+    
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g--~~~i~~g~llR~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~   78 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYG--YTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTM   78 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhC--CceEcHHHHHHHHHHhhhhhHHHHHHHHHhcCCccccchhhHHHHHhhcccc
Confidence            67899999999999999999999998  88898744 331    110               11122222222222    


Q ss_pred             ---hCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCC
Q 006654           76 ---KKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELP  151 (636)
Q Consensus        76 ---~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P  151 (636)
                         .....+++|+++++..+...+..+ ......-.+++++++.+++.+|..+|....++ .... .+.+++..+.|.. 
T Consensus        79 ~~~~~~~~~~~~g~pr~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~r~~~R~~~~~r-~~~~-~e~i~~r~~~y~~-  155 (194)
T d1teva_          79 AANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGR-SDDN-RESLEKRIQTYLQ-  155 (194)
T ss_dssp             HHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSC-CSCC-HHHHHHHHHHHHH-
T ss_pred             hhhhcccceeeccchhhHHHHHHHhhhhhccccccEEEeecCcchhheeecccCCCcccC-Cccc-hHHHHHHHHHHHH-
Confidence               234679999999999988888777 54444446788999999999999999775543 2223 3334433333311 


Q ss_pred             CccCCccEEEEeCChhHHHHHHHHhccCCCCcccCCCccCCCCCchhhHHHHHHHHhhcC
Q 006654          152 KLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFGQKNPDAKIQLGIMKFLKKVD  211 (636)
Q Consensus       152 ~~~Egfd~Viii~~~~~vdaiv~~~~~Lgpfd~~phgc~~~~~~~~~v~~~i~k~l~~~g  211 (636)
                                      ....++..|+..+-+    |...++ .....|..+|.++|++.|
T Consensus       156 ----------------~~~~l~~~y~~~~~~----~~IDa~-~s~eeV~~~I~~il~k~g  194 (194)
T d1teva_         156 ----------------STKPIIDLYEEMGKV----KKIDAS-KSVDEVFDEVVQIFDKEG  194 (194)
T ss_dssp             ----------------HHHHHHHHHHHTTCE----EEEETT-SCHHHHHHHHHHHHHHCC
T ss_pred             ----------------HHHHHHHHHHhcCCE----EEEECC-CCHHHHHHHHHHHHhcCC
Confidence                            122333334444433    123334 456667777777777654

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=99.34  E-value=7.7e-12  Score=118.35  Aligned_cols=109  Identities=20%  Similarity=0.280  Sum_probs=79.5

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh-hhhcC------------------CCCCcHHHHHHHHHHHHh---
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINK------------------GKSGTKVQCLTSASSALK---   76 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~-D~ir~------------------~~~~~~~~~~~~~~~~L~---   76 (636)
                      +...|+|+|||||||||+|+.|+++++  +.+|+. |.+|.                  +.......+...+...+.   
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~~g--~~~i~~gdllr~~~~~~~~~g~~~~~~~~~g~~~~~~~v~~~~~~~l~~~~   79 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKNFC--VCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPP   79 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHT--CEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGG
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHhC--CeEEeHHHHHHHHHhccCcccchhhhhhccCCccccceeeeeehhhhcccc
Confidence            334566789999999999999999998  888997 45542                  112233334444445553   


Q ss_pred             CCCeEEEeCCCCCHHHHHHHHHh-CCCCC-eEEEEEEeCCHHHHHHHHHhccccc
Q 006654           77 KGKSVFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRIEHE  129 (636)
Q Consensus        77 ~G~~VIID~tn~~~~~R~~l~~l-~~~g~-~v~vV~Ld~p~e~l~~R~~~R~~~~  129 (636)
                      ...++|+|+++.+..+...|... ...+. ...+++|++|.+.+.+|+..|..+.
T Consensus        80 ~~~g~ii~g~pr~~~qa~~l~~~~~~~~~~~~~~~~l~v~~~~~~~r~~~r~~~~  134 (190)
T d1ak2a1          80 CKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHS  134 (190)
T ss_dssp             GTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECC
T ss_pred             ccCceeecccccchhHHHHHHHHhhhccccccccccccchHHHHHhhhccCCCCC
Confidence            34579999999999999888666 33332 3367889999999999999998753

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.33  E-value=4.8e-12  Score=116.74  Aligned_cols=124  Identities=22%  Similarity=0.193  Sum_probs=89.8

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCC--------Cc--------HHHHHHHHHHHHhCCCeEEE
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS--------GT--------KVQCLTSASSALKKGKSVFL   83 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~--------~~--------~~~~~~~~~~~L~~G~~VII   83 (636)
                      +++|+|.|+|||||||+|+.|+++++.++.+++.|.++....        ..        .......+...+..+..+|+
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~   83 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAKEGYFVIL   83 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHHHHHHhcCCcccccchhhhHHHHHHHHHHHHHHHHHhcCCCeEe
Confidence            568999999999999999999999998888899988863211        11        11223455666788889999


Q ss_pred             eCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCC
Q 006654           84 DRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPK  152 (636)
Q Consensus        84 D~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~  152 (636)
                      |+.. ....+..+.   ..+..+..++|.++.+++.+|+.+|....     ....+.+..+++.+..+.
T Consensus        84 ~~~~-~~~~~~~~~---~~~~~~~~i~l~~~~e~~~~R~~~R~~~~-----~~~~~~~~~~~~~~~~~~  143 (176)
T d1zp6a1          84 DGVV-RPDWLPAFT---ALARPLHYIVLRTTAAEAIERCLDRGGDS-----LSDPLVVADLHSQFADLG  143 (176)
T ss_dssp             CSCC-CTTTTHHHH---TTCSCEEEEEEECCHHHHHHHHHTTCTTS-----CCCHHHHHHHHHHTTCCG
T ss_pred             cccc-cHHHHHHHH---hcccccccccCCCCHHHHHHHHHhCCCcc-----ccchhhHHHHHHHHhhcc
Confidence            9854 444544442   33445678899999999999999997642     334667777887775544

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.29  E-value=1.9e-11  Score=116.21  Aligned_cols=109  Identities=25%  Similarity=0.398  Sum_probs=81.7

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-cC------------------CCCCcHHHHHHHHHHHHh-
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALK-   76 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r~------------------~~~~~~~~~~~~~~~~L~-   76 (636)
                      ..++.+|+|+|||||||||+|+.|+++++  +.||+.+++ ++                  +...+.+.+...+..++. 
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~g--~~~is~g~llr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   82 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQKYG--YTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDMLRDAMVA   82 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHHHTC--CEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHhC--CeeEeccHHHHHHHHHhHhhhhhhHHHHhhccCCchheeeeehhhhhhh
Confidence            34678899999999999999999999998  889997554 21                  222233444455555553 


Q ss_pred             ---CCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 006654           77 ---KGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEG  130 (636)
Q Consensus        77 ---~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~  130 (636)
                         ..+++|+|+++.+..+...+... ....   .++++.++.+++.+|...|.....
T Consensus        83 ~~~~~~g~ildg~pr~~~qa~~~~~~~~~~~---~~~~~~~~~~~~~~r~~~~~~~~~  137 (194)
T d3adka_          83 KVDTSKGFLIDGYPREVKQGEEFERKIGQPT---LLLYVDAGPETMTKRLLKRGETSG  137 (194)
T ss_dssp             TTTTCSCEEEESCCSSHHHHHHHHHHTCCCS---EEEEEECCHHHHHHHHHHHHHHHT
T ss_pred             cccccccceeeeccchhHHHHHHHHHhCCcc---chhccccchhhhHhHhhhhccccc
Confidence               34579999999999999888776 5443   377889999999999888866443

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.26  E-value=4.7e-12  Score=119.89  Aligned_cols=105  Identities=22%  Similarity=0.275  Sum_probs=73.6

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC-------------------CCCcHHHHH----HHHHHH
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG-------------------KSGTKVQCL----TSASSA   74 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~-------------------~~~~~~~~~----~~~~~~   74 (636)
                      ++|..|+|.|||||||||+|+.|+++++  +.+++.+.+...                   .........    ......
T Consensus         1 ~~Pm~I~i~GppGsGKsT~a~~La~~~~--~~~is~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   78 (189)
T d1zaka1           1 ADPLKVMISGAPASGKGTQCELIKTKYQ--LAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQP   78 (189)
T ss_dssp             CCSCCEEEEESTTSSHHHHHHHHHHHHC--CEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHC--CcEEehhHHHHHhhhcccHHHHHHHHHHhcCCcccceeehhhhhhHhhhc
Confidence            3577899999999999999999999999  888997555321                   111111111    111112


Q ss_pred             HhCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           75 LKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        75 L~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      .....++|+|+++.+..+...+... ....   .+|+|++|.+++.+|+..|..
T Consensus        79 ~~~~~~~vid~~~~~~~q~~~l~~~~~~p~---~~i~L~~~~e~l~~R~~~~~~  129 (189)
T d1zaka1          79 DAQENGWLLDGYPRSYSQAMALETLEIRPD---TFILLDVPDELLVERVVFDDT  129 (189)
T ss_dssp             HHHHTCEEEESCCCSHHHHHHHHTTTCCCS---EEEEEECCHHHHHHHHTTTCC
T ss_pred             ccccCcEEeeccchhhHHHhhhhhcccccc---hheeechhhhhhhhhccccch
Confidence            2233579999999999988887555 3333   488999999999999876654

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.25  E-value=4.8e-11  Score=113.31  Aligned_cols=109  Identities=17%  Similarity=0.330  Sum_probs=77.4

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh-hhhcCC----C---------------CCcHHHHHHHH----H
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINKG----K---------------SGTKVQCLTSA----S   72 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~-D~ir~~----~---------------~~~~~~~~~~~----~   72 (636)
                      +++..+|+|+|||||||||+|+.|++.++  +.+|+. |.+|..    .               ..........+    .
T Consensus         5 ~~~~~iI~i~GppGSGKsT~a~~La~~~g--~~~is~gdl~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~   82 (196)
T d1ukza_           5 PDQVSVIFVLGGPGAGKGTQCEKLVKDYS--FVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAIS   82 (196)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHSS--CEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHhC--CeEEehhHHHHHHhhhcccHHHHHHHHhhhccccccchhHHHHHHHHHH
Confidence            34567888999999999999999999998  888997 444321    0               00111111222    2


Q ss_pred             HHH-hCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 006654           73 SAL-KKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEG  130 (636)
Q Consensus        73 ~~L-~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~  130 (636)
                      ... .....+|+|+++.+..++..+... ...+   .++++++|.+++.+|...|....+
T Consensus        83 ~~~~~~~~~~vl~g~p~~~~q~~~~~~~~~~~~---~~i~l~~~~e~~~~R~~~~~~~~~  139 (196)
T d1ukza_          83 DNVKANKHKFLIDGFPRKMDQAISFERDIVESK---FILFFDCPEDIMLERLLERGKTSG  139 (196)
T ss_dssp             HHHHTTCCEEEEETCCCSHHHHHHHHHHTCCCS---EEEEEECCHHHHHHHHHHHHHHHC
T ss_pred             hhhccCCCceeeeccchhHHHHHHHHHhccccc---eeeccCCCHHHHHHHHHhcccccc
Confidence            222 334689999999999988877666 5444   488999999999999998876443

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.23  E-value=1.1e-10  Score=106.92  Aligned_cols=108  Identities=16%  Similarity=0.251  Sum_probs=74.9

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCC----------------CC---cH--H----HHHHHHHHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK----------------SG---TK--V----QCLTSASSA   74 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~----------------~~---~~--~----~~~~~~~~~   74 (636)
                      .++|+|.|+|||||||+|+.|++.++.++.+++.|.+....                ..   ..  .    .....+...
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVAM   82 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCCeEEeecchhhccccccccchhHHhhhhcccchhHHHHHHHHHHHHHHHHHHH
Confidence            45899999999999999999999999778888876653110                00   00  1    112334455


Q ss_pred             HhCCCeEEEeCCCCCHHHHH-HHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654           75 LKKGKSVFLDRCNLEREQRT-DFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (636)
Q Consensus        75 L~~G~~VIID~tn~~~~~R~-~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~  128 (636)
                      +..+..+|++.......... .+.... .+..+..|+|.+|.+++.+|...|..+
T Consensus        83 ~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~v~l~~~~e~~~~R~~~R~~~  136 (178)
T d1qhxa_          83 ARAGARIIIDDVFLGGAAAQERWRSFV-GDLDVLWVGVRCDGAVAEGRETARGDR  136 (178)
T ss_dssp             HHTTCEEEEEECCTTTHHHHHHHHHHH-TTCCEEEEEEECCHHHHHHHHHHTSSS
T ss_pred             HhhccceEEeeeecchHHHHHHHHHhh-cCCceeecccCCCHHHHHHHHHhcCCc
Confidence            67788889888766554433 333332 245567889999999999999999764

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.23  E-value=1.5e-11  Score=115.73  Aligned_cols=103  Identities=16%  Similarity=0.202  Sum_probs=74.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC-------------------CCCCcHHHHHHHHHHHHh----CC
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------GKSGTKVQCLTSASSALK----KG   78 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~-------------------~~~~~~~~~~~~~~~~L~----~G   78 (636)
                      .|+|+|+|||||||+|+.|+++++  +.+|+.+++..                   +...........+...+.    .+
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~g--~~~i~~~d~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERFH--AAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACK   81 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC--CceEeccccceeccccCChHHHHHHHHHhhhcccccchhHHHHHHHHhcCcccc
Confidence            367889999999999999999998  88899855431                   111122223333333332    34


Q ss_pred             CeEEEeCCCCCHHHHHHHHHh-CCCCCe-EEEEEEeCCHHHHHHHHHhcc
Q 006654           79 KSVFLDRCNLEREQRTDFVKL-GGPEVD-VHAVVLDLPAKLCISRSVKRI  126 (636)
Q Consensus        79 ~~VIID~tn~~~~~R~~l~~l-~~~g~~-v~vV~Ld~p~e~l~~R~~~R~  126 (636)
                      .++|+|+++.+..++..+..+ ...+.+ -.+|+|+++.+++.+|+..|.
T Consensus        82 ~g~i~dg~p~~~~q~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~~~  131 (180)
T d1akya1          82 NGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITNAD  131 (180)
T ss_dssp             SCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHSHH
T ss_pred             CCEeccCccchhhhHHHHHhhHHHcCCCceeeeecccccchhhhcccccc
Confidence            679999999999998887776 444443 368899999999999987664

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=99.23  E-value=8.3e-11  Score=110.45  Aligned_cols=156  Identities=16%  Similarity=0.177  Sum_probs=97.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-cC------------------CCCCcHHHHHHHHHHHHh---CCC
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALK---KGK   79 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r~------------------~~~~~~~~~~~~~~~~L~---~G~   79 (636)
                      .|+|+|+|||||||+|+.|+++++  +.+++.+++ +.                  +...........+...+.   ...
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~g--~~~is~gdllr~~~~~~~~~g~~i~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~   79 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKYG--TPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEVTIGIVRERLSKSDCDN   79 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC--CCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSSTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC--CceeeHHHHHHHhhhcCCchHHHHHHHHHcCCcccCcchhHHHHHhhccccccc
Confidence            478999999999999999999998  778887443 31                  111122233334444442   235


Q ss_pred             eEEEeCCCCCHHHHHHHHHh-CCCCCe-EEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCc
Q 006654           80 SVFLDRCNLEREQRTDFVKL-GGPEVD-VHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGF  157 (636)
Q Consensus        80 ~VIID~tn~~~~~R~~l~~l-~~~g~~-v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~fe~P~~~Egf  157 (636)
                      .+|+|+++.+..+...|.+. ...+.. ...+.++++.+.+.+|...+..         + +.+++-++.|.        
T Consensus        80 ~~vl~g~p~~~~~~~~l~~~~~~~~~~i~~~~~l~~~~e~~~~R~~~~~~---------~-e~i~~R~~~y~--------  141 (182)
T d1s3ga1          80 GFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELIARLTADDN---------P-DTVTNRLEVNM--------  141 (182)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTTCS---------H-HHHHHHHHHHH--------
T ss_pred             ceeeeccccchhHHHHHHHHhhcCCCeeeeccchhhhhhhhhhhhhccch---------h-HHHHHHHHHHH--------
Confidence            69999999999998888776 444443 3567889999999999754432         2 33333222221        


Q ss_pred             cEEEEeCChhHHHHHHHHhccCCCCcccCCCccCCCCCchhhHHHHHHHHhhcC
Q 006654          158 SRITLCQNENDVQAALDTYSGLGPLDTLPHGSFGQKNPDAKIQLGIMKFLKKVD  211 (636)
Q Consensus       158 d~Viii~~~~~vdaiv~~~~~Lgpfd~~phgc~~~~~~~~~v~~~i~k~l~~~g  211 (636)
                               +....+++-|+..+-+    |...++ .+...|..+|.++|+..|
T Consensus       142 ---------~~~~~i~~~y~~~~~~----~~Id~~-~~~eeV~~~I~~il~~~g  181 (182)
T d1s3ga1         142 ---------NQTAPLLAFYDSKEVL----VNINGQ-KDIKDVFKDLDVILQGNG  181 (182)
T ss_dssp             ---------HHHHHHHHHHHTTTCE----EEEECS-SCHHHHHHHHHHHHTCCC
T ss_pred             ---------HHHHHHHHHHHhcCCE----EEEECC-CCHHHHHHHHHHHHHhcC
Confidence                     1233334445444333    223434 566777788888886554

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=99.20  E-value=7e-11  Score=112.54  Aligned_cols=105  Identities=16%  Similarity=0.151  Sum_probs=74.3

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-cCC------------------CCCcHHHHHHHHHHHH--
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NKG------------------KSGTKVQCLTSASSAL--   75 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r~~------------------~~~~~~~~~~~~~~~L--   75 (636)
                      +++...|+|+|+|||||||+|+.|+++++  +.||+.+++ ++.                  .......+...+.+.+  
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~~~g--~~~is~gdllr~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~   80 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITKHFE--LKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRLVLHELKN   80 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHHHBC--CEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHHHHC--CeEEcHHHHHHHHHHhhhhhhHHHHHHhhhhhhccchhhhhhhhhhhhh
Confidence            45566788899999999999999999999  889998444 321                  1112233333333333  


Q ss_pred             hCCCeEEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 006654           76 KKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRI  126 (636)
Q Consensus        76 ~~G~~VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~  126 (636)
                      ....++|+|+++.+..+...|......   ..+|+|++|.+.+.+|+..|.
T Consensus        81 ~~~~~~ildGfPr~~~q~~~l~~~~~~---~~vi~L~v~~~~l~~R~~~r~  128 (189)
T d2ak3a1          81 LTQYNWLLDGFPRTLPQAEALDRAYQI---DTVINLNVPFEVIKQRLTDRP  128 (189)
T ss_dssp             HTTSCEEEESCCCSHHHHHHHHTTCCC---CEEEEEECCHHHHHHHHTGSH
T ss_pred             hhhcCcccccccchhhHHHHhhhcCcc---eEEEEEeccchhhhhhcccch
Confidence            234579999999999988776443211   247899999999999997764

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.19  E-value=5.3e-11  Score=111.56  Aligned_cols=105  Identities=16%  Similarity=0.233  Sum_probs=77.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-cC------------------CCCCcHHHHHHHHHHHHh---CCC
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALK---KGK   79 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r~------------------~~~~~~~~~~~~~~~~L~---~G~   79 (636)
                      .|+|.|+|||||||+|+.|++.++  +.+|+.+++ +.                  +.....+.....+...+.   ...
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g--~~~i~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   79 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLG--IPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDAAN   79 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT--CCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSGGGTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC--CceEchHHHHHHHHhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHhhCccccc
Confidence            478899999999999999999998  788887554 21                  111122333344444442   345


Q ss_pred             eEEEeCCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhcccc
Q 006654           80 SVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEH  128 (636)
Q Consensus        80 ~VIID~tn~~~~~R~~l~~l-~~~g~~v-~vV~Ld~p~e~l~~R~~~R~~~  128 (636)
                      .+|+|+++.+..+...|... ...+..+ .++++++|.+++.+|+..|.+.
T Consensus        80 ~~i~d~~p~~~~~~~~l~~~~~~~~~~~~~vi~l~~~~e~l~~R~~~r~r~  130 (181)
T d2cdna1          80 GFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRA  130 (181)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCT
T ss_pred             cEEecccccchhHHHHHHHHHHhcCCCccEEEeccCCHHHHHhhhcccccc
Confidence            79999999999999888777 4444443 6889999999999999998764

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=1.7e-10  Score=107.86  Aligned_cols=101  Identities=21%  Similarity=0.292  Sum_probs=73.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh-cC------------------CCCCcHHHHHHHHHHHHhC---CC
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALKK---GK   79 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i-r~------------------~~~~~~~~~~~~~~~~L~~---G~   79 (636)
                      .|+|+|+|||||||+|+.|+++++  +.+++.+++ +.                  +...+...+...+.+.+..   ..
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~~--~~~i~~~~llr~~~~~~~~~~~~i~~~~~~g~~~~d~~v~~~~~~~~~~~~~~~   79 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKYG--IPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRN   79 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHC--CCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC--CceechhhHhHHhhccCChHHHHHHHHHHcCCCCcchhHHHHHHHhhccccccc
Confidence            477899999999999999999998  778887544 21                  1111222333444444422   34


Q ss_pred             eEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           80 SVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        80 ~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      ++|+|+++.+..+...+.+. ....   .+|+|++|.+++.+|+..|..
T Consensus        80 g~i~~g~pr~~~~~~~~~~~~~~~~---~vi~L~~~~~~l~~R~~~~~~  125 (179)
T d1e4va1          80 GFLLDGFPRTIPQADAMKEAGINVD---YVLEFDVPDELIVDRIVKDDQ  125 (179)
T ss_dssp             CEEEESCCCSHHHHHHHHHTTCCCS---EEEEEECCHHHHHHHHHTTCS
T ss_pred             ceeecccccchHHhhhhhhccCCce---EEEEeccchhhhhhhhccccc
Confidence            79999999999888777666 4443   388999999999999988744

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.14  E-value=9.5e-11  Score=111.18  Aligned_cols=107  Identities=18%  Similarity=0.251  Sum_probs=78.1

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhcCCC-----------CCcH----------HHHHHHHHHHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGK-----------SGTK----------VQCLTSASSAL   75 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir~~~-----------~~~~----------~~~~~~~~~~L   75 (636)
                      |.+|+|+|+|||||||+|++|++.++   .....++.|.+|...           ....          ......+.+.+
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKFL   81 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcccceehhhccccccccccccccccchhhHHHHHHHHHHHHHHHH
Confidence            78999999999999999999998764   445678888876210           0000          01112223333


Q ss_pred             --hCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 006654           76 --KKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI  126 (636)
Q Consensus        76 --~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~  126 (636)
                        ..|..+|+|++|...+.|..+.++ +..+..+.++.+.++.+.+.+++..+.
T Consensus        82 ~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (213)
T d1bifa1          82 SEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQV  135 (213)
T ss_dssp             HTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHH
T ss_pred             HhcCCCEEEeecCCccHHHHHHHHHHHHhcCCeEEEEEeeccHHHHHHHhHHHH
Confidence              345679999999999999999999 778888888888888888877766543

>d1yd9a1 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Histone macro-H2a1.1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.11  E-value=1.2e-11  Score=118.36  Aligned_cols=108  Identities=10%  Similarity=0.134  Sum_probs=87.1

Q ss_pred             CCchhhHHHHHHHHhhc---CCCCCCCCCCcccCCCCCCcccccccccccCcceecccccccchhhcccCChhhhhhhcc
Q 006654          194 NPDAKIQLGIMKFLKKV---DAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQN  270 (636)
Q Consensus       194 ~~~~~v~~~i~k~l~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~l~~  270 (636)
                      +++..+|.+|++.+++.   .....+|.. .        .|.+.++.|.++.|++.+.|..  ....+.+..++.+||.+
T Consensus        48 ai~~~~G~~l~~e~~~~~~~~~~~~~g~~-~--------vT~~~~L~~k~IiH~v~P~~~~--~~~~~~L~~~~~~~L~~  116 (188)
T d1yd9a1          48 TLEKKGGKEFVEAVLELRKKNGPLEVAGA-A--------VSAGHGLPAKFVIHCNSPVWGS--DKCEELLEKTVKNCLAL  116 (188)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCSCCTTCE-E--------EEECTTSSSSEEEEECCCCTTS--TTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccCCCCe-e--------ecccCCCCceEEeeeccccCCC--cchHHHHHHHHHHHHHH
Confidence            67888899998877642   112233321 1        2455677888999998888876  44557888999999999


Q ss_pred             cCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcC
Q 006654          271 GSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG  312 (636)
Q Consensus       271 ~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~  312 (636)
                      |++++++|||||+||||+||||.++||+++++++.+|+.+++
T Consensus       117 a~~~~~~SIafP~igtG~~g~p~~~~a~~~~~ai~~fl~~~~  158 (188)
T d1yd9a1         117 ADDRKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTM  158 (188)
T ss_dssp             HHHTTCSEEEECCCSBSTTCBCHHHHHHHHHHHHHHHHTTCT
T ss_pred             HHHcCCCeEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999998753

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.11  E-value=2.1e-10  Score=111.14  Aligned_cols=112  Identities=18%  Similarity=0.192  Sum_probs=86.6

Q ss_pred             cccCccEEEEEEccCCCcHHHHHHHHHHHc----CCCeEEeehhhhcCCCC---C-cH-------HHHHHHHHHHHhCCC
Q 006654           15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTINKGKS---G-TK-------VQCLTSASSALKKGK   79 (636)
Q Consensus        15 ~~~~~p~LIvLvG~PGSGKSTlAr~Lak~~----~~~~~~Is~D~ir~~~~---~-~~-------~~~~~~~~~~L~~G~   79 (636)
                      ....++.+|+|.|+|||||||+|+.|++++    +.++.+++.|.+|....   + +.       ..+...+......|.
T Consensus        19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~~l~~~l~ys~~~r~~~~~r~~~~a~~~~~~g~   98 (208)
T d1m7ga_          19 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNENIRRIAEVAKLFADSNS   98 (208)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HhCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHHhhcCCCCCChhHHHHHHHHHHHHHHHHhccCC
Confidence            456688999999999999999999998754    45678899999986532   1 11       123355566668899


Q ss_pred             eEEEeCCCCCHHHHHHHHHh-------CCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 006654           80 SVFLDRCNLEREQRTDFVKL-------GGPEVDVHAVVLDLPAKLCISRSVKRI  126 (636)
Q Consensus        80 ~VIID~tn~~~~~R~~l~~l-------~~~g~~v~vV~Ld~p~e~l~~R~~~R~  126 (636)
                      .+|++........|....++       ...+..+..||+++|.++|.+|..+|.
T Consensus        99 ~viv~~i~~~~~~R~~~r~i~~~~~~~~~~~~~~~eVyv~~~le~~~~Rd~k~~  152 (208)
T d1m7ga_          99 IAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGL  152 (208)
T ss_dssp             EEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTCH
T ss_pred             ceeeecccccHHHHHHHHHHhhhhccchhcCCceEEEEEcCCHHHHHHhhcccc
Confidence            99999999999888877654       235566788999999999999977664

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=99.09  E-value=7.1e-11  Score=109.91  Aligned_cols=99  Identities=21%  Similarity=0.192  Sum_probs=63.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCc----------H---HHHHHHHHHHHhCCCeEEEeC--C
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT----------K---VQCLTSASSALKKGKSVFLDR--C   86 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~----------~---~~~~~~~~~~L~~G~~VIID~--t   86 (636)
                      -|+|+|+|||||||+|+.|+++++  +.++|.|.+.+...+.          +   ......+...+.....+++.+  .
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~Lg--~~~id~D~~ie~~~g~~i~ei~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~   81 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARALG--YEFVDTDIFMQHTSGMTVADVVAAEGWPGFRRRESEALQAVATPNRVVATGGGM   81 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHT--CEEEEHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEECCTTG
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC--CCEEehhhhhhhhhhhhhhhhhcccchHHHHHHHHHHHHhhccccceecccccc
Confidence            367889999999999999999999  6778988874322220          0   111222222333344455543  2


Q ss_pred             CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654           87 NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (636)
Q Consensus        87 n~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~  128 (636)
                      ......|..+   +..+.   +|||++|.+++.+|+..|...
T Consensus        82 ~~~~~~~~~l---~~~~~---~v~L~~~~e~l~~Rl~~~~~~  117 (170)
T d1e6ca_          82 VLLEQNRQFM---RAHGT---VVYLFAPAEELALRLQASLQA  117 (170)
T ss_dssp             GGSHHHHHHH---HHHSE---EEEEECCHHHHHHHHHHHHCS
T ss_pred             hhhhHHHHhh---hccce---eEEEecCchhHHHHHhhcccc
Confidence            3444445433   22333   789999999999998877654

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.05  E-value=1.1e-09  Score=101.82  Aligned_cols=104  Identities=15%  Similarity=0.233  Sum_probs=73.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC-------------------CCCCcHHHHHHHHHHHHhC---CC
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------GKSGTKVQCLTSASSALKK---GK   79 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~-------------------~~~~~~~~~~~~~~~~L~~---G~   79 (636)
                      .|+|+|+|||||||+|+.|+++++  +.+|+.+++..                   +...+.......+.+.+..   ..
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~~--~~~i~~~~ll~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAYG--IPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLSKDDCQN   79 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC--CCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC--CceechhHHHHHhhccCChhhHHHHHHHHcCCeeccchHHHHHHHHhhchhhhc
Confidence            378999999999999999999998  77898755421                   1111222223333344322   35


Q ss_pred             eEEEeCCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhccc
Q 006654           80 SVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        80 ~VIID~tn~~~~~R~~l~~l-~~~g~~v-~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      .+|+++.+....+...+... ...+..+ .+++++++.+.+.+|...|..
T Consensus        80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~R~~~~~~  129 (182)
T d1zina1          80 GFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERLTADDN  129 (182)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTTCS
T ss_pred             CcccccccchhHHHHHHHHhhhccCCceeeeeccccccchhhhccccccc
Confidence            79999999888877776666 4444433 678899999999999987744

>d1spva_ c.50.1.2 (A:) Hypothetical protein YmbD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein YmbD
species: Escherichia coli [TaxId: 562]

Probab=99.01  E-value=6.2e-11  Score=111.38  Aligned_cols=111  Identities=12%  Similarity=0.134  Sum_probs=86.6

Q ss_pred             CCchhhHHHHHHHHhhc---CCCCCCCCCCcccCCCCCCcccccccccccCcceecccccccchhhcccCChhhhhhhcc
Q 006654          194 NPDAKIQLGIMKFLKKV---DAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQN  270 (636)
Q Consensus       194 ~~~~~v~~~i~k~l~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~l~~  270 (636)
                      +++.++|.++++.+++.   .....+|.  +.       .|.+.++.|....|++.|.|........+++..++.+||..
T Consensus        35 ai~~~~G~~~~~~~~~~~~~~g~~~~g~--~~-------~T~~~~l~~k~IiH~v~P~~~~~~~~~~~~l~~~~~~~L~~  105 (172)
T d1spva_          35 AIHRAAGPALLDACLKVRQQQGDCPTGH--AV-------ITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRL  105 (172)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHCSCCTTC--EE-------EECCTTSSSSEEEEECCCCCSSSSSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCchHHHHHHHHHHhCCCCCCC--EE-------EEEcCCCCCcEEEEeccccccCCchHHHHHHHHHHHHHHHH
Confidence            56778888888776542   12334443  11       13445677888888888877654444456788899999999


Q ss_pred             cCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCC
Q 006654          271 GSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGN  313 (636)
Q Consensus       271 ~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~~  313 (636)
                      |++++++|||||+||||.||||.++||+++++++.+|++.++.
T Consensus       106 a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~~~ai~~fl~~~~~  148 (172)
T d1spva_         106 VAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHAL  148 (172)
T ss_dssp             HHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999999999999999998754

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.99  E-value=4.4e-10  Score=103.15  Aligned_cols=101  Identities=18%  Similarity=0.172  Sum_probs=69.6

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC--CC-----------C---cHHHHHHHHHHHHhCCCe
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG--KS-----------G---TKVQCLTSASSALKKGKS   80 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~--~~-----------~---~~~~~~~~~~~~L~~G~~   80 (636)
                      .+++..|+|+|+|||||||+|+.|+++++ .+.+++.|.+...  ..           .   ....+...+...+..+..
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   80 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAAELD-GFQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLLDFMEPIMVSRGN   80 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHHST-TEEEEEHHHHHHHTTCSCC------CCCCCHHHHHHHHHHHHHHHTSSSE
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHHhC-CCcEEeHHHHHHHHhhhhhHHHhhcccchHHHHHHHHHHHHHhhhhhccc
Confidence            46778899999999999999999999986 2456666655311  00           0   112334555666778888


Q ss_pred             EEEeCCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           81 VFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        81 VIID~tn~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      +++|..+...        +.. .....+|||++|.+++.+|+.+|..
T Consensus        81 ~~~~~~~~~~--------~~~-~~~~~vI~L~~~~e~l~~Rl~~R~~  118 (174)
T d1y63a_          81 HVVDYHSSEL--------FPE-RWFHMVVVLHTSTEVLFERLTKRQY  118 (174)
T ss_dssp             EEEECSCCTT--------SCG-GGCSEEEEEECCHHHHHHHHHHTTC
T ss_pred             ccccHHHHHH--------HHH-hcCceEEEEECCHHHHHHHHHhCCC
Confidence            9998855431        111 1122478999999999999999965

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=98.96  E-value=2.1e-10  Score=106.12  Aligned_cols=96  Identities=14%  Similarity=0.088  Sum_probs=62.0

Q ss_pred             EEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC-------------cHHHHHHHHHHHHhCCCeEEEeCCCCC
Q 006654           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-------------TKVQCLTSASSALKKGKSVFLDRCNLE   89 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~-------------~~~~~~~~~~~~L~~G~~VIID~tn~~   89 (636)
                      |+|+|+|||||||+|+.|++.++  +.++|.|.+.+...+             ........+...+.....+|+...- .
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~--~~~~d~d~~ie~~~g~~i~~~~~~~g~~~~r~~e~~v~~~l~~~~~~v~~~~g-~   79 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLD--LVFLDSDFLIEQKFNQKVSEIFEQKRENFFREQEQKMADFFSSCEKACIATGG-G   79 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHT--CEEEEHHHHHHHHHTSCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEEEECCT-T
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC--CCEEecCchhhhHHhhhhhhHHHhhhhccchhhhhhhchhhhhcccccccccc-c
Confidence            78889999999999999999999  667888876322111             1112335555666555555554421 1


Q ss_pred             HHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           90 REQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        90 ~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      ...+..   +.+.+.   +|||++|.+++.+|+..|..
T Consensus        80 ~~~~~~---l~~~~~---vI~L~~s~~~l~~Rl~~~~~  111 (161)
T d1viaa_          80 FVNVSN---LEKAGF---CIYLKADFEYLKKRLDKDEI  111 (161)
T ss_dssp             GGGSTT---GGGGCE---EEEEECCHHHHTTCCCGGGT
T ss_pred             hhhHHH---HHhCCe---EEEeccchHHHHHHHccccc
Confidence            111111   133333   79999999999999877654

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=2.7e-09  Score=99.54  Aligned_cols=109  Identities=19%  Similarity=0.260  Sum_probs=69.3

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhcCCCCC----cH-------HHHHHHHHHHHhCCCeEEEe
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKSG----TK-------VQCLTSASSALKKGKSVFLD   84 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir~~~~~----~~-------~~~~~~~~~~L~~G~~VIID   84 (636)
                      ++.+|+|+|+|||||||+|+.|++.++   ....++..|.++.....    ..       ......+...+..+..++++
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITS   97 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEECHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccchhHHhhhcccccccchhhhHHHHHHHHHHHHHHHHHhcCCccccc
Confidence            577899999999999999999999875   23455666776643211    11       12234555666788899999


Q ss_pred             CCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           85 RCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        85 ~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      ..+.....+..+..+ ......+..+.+..+...+.+|..+|..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  141 (195)
T d1x6va3          98 FISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLY  141 (195)
T ss_dssp             CCCCCHHHHHHHHHHHHTTTCCEEEEEECC--------------
T ss_pred             cccchHHHHHHHHHHHhccccccccccchhheeeehhhccchhh
Confidence            999998888888887 6666666667777777777777665543

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.93  E-value=2.6e-09  Score=104.87  Aligned_cols=112  Identities=13%  Similarity=0.174  Sum_probs=88.3

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCc-----------H--------HHHHHHHHHHHh
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT-----------K--------VQCLTSASSALK   76 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~-----------~--------~~~~~~~~~~L~   76 (636)
                      ....|..|+|.|||||||||+|+.|+..++.++..++.|.++......           .        ..........+.
T Consensus        28 ~~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (273)
T d1gvnb_          28 AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSD  107 (273)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTSTTHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHHHHhccCcccchhhhHHHHHHHHhhccchHHHHHHHHHh
Confidence            445688999999999999999999999998788999999987543220           0        011233445666


Q ss_pred             CCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           77 KGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        77 ~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      .+...++|.++........+... ...++.+.+.++..+.+.+..|+..|..
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~R~~  159 (273)
T d1gvnb_         108 QGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYE  159 (273)
T ss_dssp             HTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHH
T ss_pred             hCCCCcccccccchHHHHHHHHHHHHcCCeEEEEecCCCchhhhhHHhcCCc
Confidence            77888999998888888777777 8888888888899999999999888753

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.87  E-value=1.4e-09  Score=100.42  Aligned_cols=116  Identities=20%  Similarity=0.208  Sum_probs=66.8

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC-c------------HHHH-HHHHHHHHhCCCeEEEeC
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-T------------KVQC-LTSASSALKKGKSVFLDR   85 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~-~------------~~~~-~~~~~~~L~~G~~VIID~   85 (636)
                      |. |+|+|+|||||||+|+.|+++++.+  ++|.|.+.+...+ +            ..+. ...+...+.....+|+.+
T Consensus         2 p~-IvliG~~G~GKSTig~~La~~l~~~--fiD~D~~ie~~~g~~i~~~~~~~g~~~~r~~e~~~~~~~~~~~~~vi~~g   78 (165)
T d2iyva1           2 PK-AVLVGLPGSGKSTIGRRLAKALGVG--LLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLG   78 (165)
T ss_dssp             CS-EEEECSTTSSHHHHHHHHHHHHTCC--EEEHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCSEEECC
T ss_pred             Cc-EEEECCCCCCHHHHHHHHHHHhCCC--eEeeccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhhhcccccccccccc
Confidence            44 5566999999999999999999954  4777765322111 0            1111 133334444444455544


Q ss_pred             C--CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHh
Q 006654           86 C--NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ  146 (636)
Q Consensus        86 t--n~~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~  146 (636)
                      .  .+....|..   +. .+.   .|||.++.+++.+|+..|..++. .......+.++.++.
T Consensus        79 g~~~~~~~~~~~---l~-~~~---~I~L~~~~~~~~~R~~~~~~Rpl-l~~~~~~e~~~~l~~  133 (165)
T d2iyva1          79 GGAVTSPGVRAA---LA-GHT---VVYLEISAAEGVRRTGGNTVRPL-LAGPDRAEKYRALMA  133 (165)
T ss_dssp             TTGGGSHHHHHH---HT-TSC---EEEEECCHHHHHHHTTCCCCCSS-TTSCCHHHHHHHHHH
T ss_pred             cccccccccccc---cc-ccc---eeeeeccchhhhhcccccccchh-ccCccHHHHHHHHHH
Confidence            2  223333222   12 233   68999999999999976655432 222344455555543

>d1vhua_ c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein AF1521
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.87  E-value=2e-10  Score=109.86  Aligned_cols=92  Identities=17%  Similarity=0.190  Sum_probs=72.9

Q ss_pred             ccccccc---cccCcceeccccccc-chhhcccCChhhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHH
Q 006654          231 ITEEKNS---CLEGQEITSLLSDAA-GEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEE  306 (636)
Q Consensus       231 ~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~l~~~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~  306 (636)
                      |.+.++.   |.+..|++.|.|... +.+..+.|..++.+||.+|++++++|||||+||||+||||.++||+++++++++
T Consensus        83 T~~~~L~~~~~k~ViH~v~P~~~~~~~~~~~~~L~~~~~~~L~~A~~~~~~SIA~P~lgtG~~g~p~~~~a~~~~~ai~~  162 (192)
T d1vhua_          83 TPAMNLEERGIKYVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAEEMGVESIAFPAVSAGIYGCDLEKVVETFLEAVKN  162 (192)
T ss_dssp             EECGGGGGGTCCEEEEEECCCCTTCCCHHHHHHHHHHHHHHHHHHHHHTCCEEEECCTTSSTTCCCHHHHHHHHHHHHHH
T ss_pred             EecccCCcccccEEEEEeeecccCCCcchhHHHHHHHHHHHHHHHHHcCCcEEEecCccCCCCCCCHHHHHHHHHHHHHH
Confidence            4445543   678888888877643 344567788999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCC-eEEEEeccC
Q 006654          307 FVNKLGN-ARLVLVDLT  322 (636)
Q Consensus       307 f~~~~~~-~~~v~~~~~  322 (636)
                      |...+.. +++|..|..
T Consensus       163 f~~~~l~~V~~v~~~~~  179 (192)
T d1vhua_         163 FKGSAVKEVALVIYDRK  179 (192)
T ss_dssp             CCCSSCCEEEEEESSHH
T ss_pred             hccCCcCEEEEEECCHH
Confidence            9665432 555554433

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.72  E-value=1.5e-08  Score=94.81  Aligned_cols=130  Identities=12%  Similarity=0.088  Sum_probs=76.2

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcCCCeE---Eeeh-----------------hhhc----CCCCCcH----------HH
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWA---RICQ-----------------DTIN----KGKSGTK----------VQ   66 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~---~Is~-----------------D~ir----~~~~~~~----------~~   66 (636)
                      .+|+|+||+||||||+++.|.++++....   +..+                 +.+.    .+.+..+          ..
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~tTR~~r~~e~~G~dy~fvs~~~f~~~~~~~~f~e~~~~~~~~~~~g~   82 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGT   82 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCCCCeEEEEeeccCCCccccCCcceeeccchhhhhhhcccccchhhhcccCcccccc
Confidence            57999999999999999999988752111   1111                 1110    0000000          00


Q ss_pred             HHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHH
Q 006654           67 CLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRML  145 (636)
Q Consensus        67 ~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~  145 (636)
                      ....+...+..|+.++++.      .+..+..+ ......+.++++.++.+++.+|+.+|..       ...+++-+|+.
T Consensus        83 ~~~~~~~~~~~g~~~i~~~------~~~g~~~l~~~~~~~~~i~i~~~s~e~L~~RL~~Rg~-------~~~e~I~~Rl~  149 (182)
T d1znwa1          83 LAQPVRAAAATGVPVLIEV------DLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGT-------ETADVIQRRLD  149 (182)
T ss_dssp             EHHHHHHHHHHTCCEEEEC------CHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSC-------SCHHHHHHHHH
T ss_pred             ccchhhhhhhcCCcccccc------ccchhhhhhhcCcceeEEeeecccHHHHHHHhhhcCc-------chHHHHHHHHH
Confidence            1245566678888899887      34444444 3333345556667788999999999976       34555555655


Q ss_pred             hhhcCCCccCCccEEEEe
Q 006654          146 QKKELPKLSEGFSRITLC  163 (636)
Q Consensus       146 ~~fe~P~~~Egfd~Viii  163 (636)
                      ....+-.....|+.++.-
T Consensus       150 ~~~~e~~~~~~fD~vI~N  167 (182)
T d1znwa1         150 TARIELAAQGDFDKVVVN  167 (182)
T ss_dssp             HHHHHHHGGGGSSEEEEC
T ss_pred             HHHHHHhhHhcCCEEEEC
Confidence            432222224557777543

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=98.69  E-value=1.4e-08  Score=92.41  Aligned_cols=94  Identities=15%  Similarity=0.170  Sum_probs=58.4

Q ss_pred             EEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC--C-----------CCCcHHHHHHHHHHHHhCCCeEEEeCCCCC
Q 006654           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK--G-----------KSGTKVQCLTSASSALKKGKSVFLDRCNLE   89 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~--~-----------~~~~~~~~~~~~~~~L~~G~~VIID~tn~~   89 (636)
                      |+|+|+|||||||+|+.|+++++  +.+++.|.+..  .           .......+...+...... ....++.....
T Consensus         7 I~i~G~pGsGKTTia~~La~~l~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   83 (173)
T d1rkba_           7 ILLTGTPGVGKTTLGKELASKSG--LKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQMRE-GGVIVDYHGCD   83 (173)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHTTCBCCCCSSSSCCCBCHHHHHHHHHHHHHH-CCEEEECSCCT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC--CcEEechHHHHHhccccchhHHhhhhhHHHHHHHHHhhhhhhc-CCcccchhHHH
Confidence            67899999999999999999999  66677655521  0           111223333444333333 33455553321


Q ss_pred             HHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654           90 REQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (636)
Q Consensus        90 ~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~  128 (636)
                      .-.+      .   ....+++|++|.+++.+|+.+|...
T Consensus        84 ~~~~------~---~~~~~i~l~~~~~~~~~Rl~~r~~~  113 (173)
T d1rkba_          84 FFPE------R---WFHIVFVLRTDTNVLYERLETRGYN  113 (173)
T ss_dssp             TSCG------G---GCSEEEEEECCHHHHHHHHHHTTCC
T ss_pred             HHHH------h---cCCCcceecCCHHHHHHHHHhcCCC
Confidence            1000      1   1124789999999999999999763

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=5e-08  Score=93.86  Aligned_cols=132  Identities=14%  Similarity=0.158  Sum_probs=80.9

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcCC-CeE-Eee--------------------hhhh----cCCCCCcHH--------H
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSAR-PWA-RIC--------------------QDTI----NKGKSGTKV--------Q   66 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~~-~~~-~Is--------------------~D~i----r~~~~~~~~--------~   66 (636)
                      .+|+|+||+||||||+.+.|.+.++. .+. .++                    .+.+    ..+.+..+.        .
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs~~~F~~~i~~g~flE~~~~~g~~YGt   82 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYGT   82 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccccccccceeecHHHHHHHhhhhhheeEEEECCceecc
Confidence            57999999999999999999988752 221 121                    0111    011100000        0


Q ss_pred             HHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHH
Q 006654           67 CLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRML  145 (636)
Q Consensus        67 ~~~~~~~~L~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~  145 (636)
                      ....+...+..|+.+|+|.      .+..+..+ ......+.++++.++.+++.+|+..|...       ..+.+.+++.
T Consensus        83 ~~~~v~~~~~~g~~~ildi------d~~g~~~lk~~~~~~~~ifi~pps~~~l~~RL~~Rg~~-------~~~~i~~Rl~  149 (205)
T d1s96a_          83 SREAIEQVLATGVDVFLDI------DWQGAQQIRQKMPHARSIFILPPSKIELDRRLRGRGQD-------SEEVIAKRMA  149 (205)
T ss_dssp             EHHHHHHHHTTTCEEEEEC------CHHHHHHHHHHCTTCEEEEEECSSHHHHHHHHHTTSCS-------CHHHHHHHHH
T ss_pred             ccchHHHHHhcCCceeecC------cHHHHHHHHhhhcccceeeeeccchHHHHHHHHhcCCc-------hHHHHHHHHH
Confidence            1255677889999999998      44444444 33333455666788889999999999763       4455555555


Q ss_pred             hhhcCCCccCCccEEEEeCC
Q 006654          146 QKKELPKLSEGFSRITLCQN  165 (636)
Q Consensus       146 ~~fe~P~~~Egfd~Viii~~  165 (636)
                      ...++-.....|+.+++-++
T Consensus       150 ~a~~E~~~~~~fD~vIvNdd  169 (205)
T d1s96a_         150 QAVAEMSHYAEYDYLIVNDD  169 (205)
T ss_dssp             HHHHHHTTGGGSSEEEECSS
T ss_pred             HHHHHHHHHhCCCEEEECcC
Confidence            44333333455888866443

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=1.1e-08  Score=91.65  Aligned_cols=119  Identities=14%  Similarity=0.122  Sum_probs=59.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCC---c----------HHHHHHHHHHHHhCCCeEEEeCCCC
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG---T----------KVQCLTSASSALKKGKSVFLDRCNL   88 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~---~----------~~~~~~~~~~~L~~G~~VIID~tn~   88 (636)
                      .|+|+|+|||||||+|+.|+++++  +.+++.|.+.....+   .          ..............+...++.....
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~--~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLN--MEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATGGG   81 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTT--CEEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTSSSEEEECCTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC--CCeEeechhHHhhhcccccchhhhhhhhHHHHHHHHHHHhhccccceEeeccch
Confidence            478889999999999999999998  555776665422111   0          0111122222333344444333222


Q ss_pred             CHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHH
Q 006654           89 EREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRML  145 (636)
Q Consensus        89 ~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~  145 (636)
                      ....+..+..+...+   ..+++..+..++..|...|..+............+...+
T Consensus        82 ~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~  135 (169)
T d1kaga_          82 SVKSRETRNRLSARG---VVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALA  135 (169)
T ss_dssp             GGGSHHHHHHHHHHS---EEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHH
T ss_pred             hhhhhhhhHHhhhcc---eeeeccCcHHHhhhHhhhccccchhcccccchhHHHHHH
Confidence            222222222221111   366778889998888877665433322233334444333

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=98.62  E-value=2.1e-08  Score=92.01  Aligned_cols=105  Identities=11%  Similarity=0.127  Sum_probs=62.6

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhh-cC-----CC--------CCcH------HHHHHHHHHHHhC
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTI-NK-----GK--------SGTK------VQCLTSASSALKK   77 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~i-r~-----~~--------~~~~------~~~~~~~~~~L~~   77 (636)
                      ++|++.|+|||||||+++.|++.++   ..+..++.+.. +.     ..        ....      ..........+..
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPETQKRIQKMAGRKIAEMAK   81 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGGGGSSCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHHHHHHhC
Confidence            5799999999999999999998864   23344443332 10     00        0010      1111223445677


Q ss_pred             CCeEEEeCCCCCHHHH-------HHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654           78 GKSVFLDRCNLEREQR-------TDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (636)
Q Consensus        78 G~~VIID~tn~~~~~R-------~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~  128 (636)
                      +..+++|+........       ..+.....   +..+++|+++.+++.+|..+|..+
T Consensus        82 ~~~vl~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~l~~~~~~~~~R~~~~~~~  136 (190)
T d1khta_          82 ESPVAVDTHSTVSTPKGYLPGLPSWVLNELN---PDLIIVVETTGDEILMRRMSDETR  136 (190)
T ss_dssp             TSCEEEECCSEEEETTEEEESSCHHHHHHHC---CSEEEEEECCHHHHHHHHHTSSSC
T ss_pred             CCeEEECCcccchHHHHHHHhhhhhhhhhcc---ccceeeecCCHHHHHHHHHHhccc
Confidence            8889999854322111       11111111   224789999999999999987664

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.58  E-value=7.5e-07  Score=83.92  Aligned_cols=128  Identities=13%  Similarity=0.149  Sum_probs=74.2

Q ss_pred             EEEEccCCCcHHHHHHHHHHHcCCCeEE----ee-----------------hhhhc----CCCCCc--------HHHHHH
Q 006654           23 VIMVGAPGSGKSTFCEHVMRSSARPWAR----IC-----------------QDTIN----KGKSGT--------KVQCLT   69 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~~~~~~~~----Is-----------------~D~ir----~~~~~~--------~~~~~~   69 (636)
                      |+|+||+||||||+++.|++.++..+..    ..                 .+.+.    .+.+..        ......
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~~~e~~~~~~~~Yg~~~~   82 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGTSKE   82 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCceeEEEEEeccCCCCCCccCceeEEeehhHHHHHhhhhhheeeeEEcCcceecccc
Confidence            7899999999999999999987633211    11                 11110    000000        000124


Q ss_pred             HHHHHHhCCCeEEEeCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhh
Q 006654           70 SASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK  148 (636)
Q Consensus        70 ~~~~~L~~G~~VIID~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~f  148 (636)
                      .+...+..|..++++.      .......+ ......+.++++.++.+++.+|+..|..       ...+++-+++.+..
T Consensus        83 ~v~~~~~~g~~~~~~~------~~~~~~~l~~~~~~~~~I~i~~~~~e~l~~RL~~R~~-------~~~e~i~~rl~~~~  149 (190)
T d1lvga_          83 AVRAVQAMNRICVLDV------DLQGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNT-------ETEESLAKRLAAAR  149 (190)
T ss_dssp             HHHHHHHTTCEEEEEC------CHHHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTC-------SCHHHHHHHHHHHH
T ss_pred             hhhhhhcCCCceeecc------hHhhhhhhhhccccceEEEEecchHHHHHHHHhhccc-------cchHHHHHHHHHHH
Confidence            5567788999999888      33444444 3333344555556778999999999976       34566666665432


Q ss_pred             ---cCCCccCCccEEEEe
Q 006654          149 ---ELPKLSEGFSRITLC  163 (636)
Q Consensus       149 ---e~P~~~Egfd~Viii  163 (636)
                         ........|+.++.-
T Consensus       150 ~~~~~~~~~~~fd~iI~N  167 (190)
T d1lvga_         150 TDMESSKEPGLFDLVIIN  167 (190)
T ss_dssp             HHTTGGGSTTTCSEEEEC
T ss_pred             HHHHhhhhcCCCCEEEEC
Confidence               222222336666443

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.46  E-value=2.2e-07  Score=84.38  Aligned_cols=108  Identities=14%  Similarity=0.170  Sum_probs=59.4

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcC----CCeEEeehhhhcCC---C-CCcHH------HHHHHHHHHHhCCCeEEE
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA----RPWARICQDTINKG---K-SGTKV------QCLTSASSALKKGKSVFL   83 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~----~~~~~Is~D~ir~~---~-~~~~~------~~~~~~~~~L~~G~~VII   83 (636)
                      ..+.+|+|+|+|||||||+|++|+++++    .....++.|..+..   . .....      .........+..+..+++
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQRIAFVATELTRAGAAVI   83 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTCCCSHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCchhhhhhHHhhhccccccchhHHHHHHHHHHHHHHhhhhhcccceee
Confidence            4568899999999999999999998874    22344555555421   1 11111      111122222333444444


Q ss_pred             eCCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhc
Q 006654           84 DRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKR  125 (636)
Q Consensus        84 D~tn~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R  125 (636)
                      .........+...... ......+..++++.+......|...+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (183)
T d1m8pa3          84 AAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRG  126 (183)
T ss_dssp             EECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCSSC
T ss_pred             cccchhhhHHHHHHHHhhcccchhhhhhHHHHHHHHHhhhhhh
Confidence            4434444333333333 34444556677788877666655433

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.46  E-value=8.3e-08  Score=89.06  Aligned_cols=52  Identities=21%  Similarity=0.208  Sum_probs=39.2

Q ss_pred             cchhhhhhhccccCccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhh
Q 006654            5 IDDTCKAKDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTI   56 (636)
Q Consensus         5 ~~~~~~~~~~~~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~i   56 (636)
                      ++..|.+....+.+.|.+|.+.|++||||||+|+.|++.++   .....++.|.+
T Consensus         7 ~~~~~~~~~~~~~~~~~iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~~~~~~~~   61 (198)
T d1rz3a_           7 IDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH   61 (198)
T ss_dssp             HHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred             HHHHHHHHHhccCCCCEEEEEECCCCCCHHHHHHHHHHHhccccccceecccccc
Confidence            45577777666677889999999999999999999998765   23444555544

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.44  E-value=1.2e-06  Score=82.11  Aligned_cols=111  Identities=16%  Similarity=0.205  Sum_probs=68.1

Q ss_pred             EEEEccCCCcHHHHHHHHHHHcCCCeE----Ee-----------------ehhhhc----CCCCCcH--------HHHHH
Q 006654           23 VIMVGAPGSGKSTFCEHVMRSSARPWA----RI-----------------CQDTIN----KGKSGTK--------VQCLT   69 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~~~~~~~----~I-----------------s~D~ir----~~~~~~~--------~~~~~   69 (636)
                      |+|+||+||||+|++++|++.++..+.    +.                 +.+.+.    .+.+..+        -....
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~f~e~~~~~g~~Yg~~~~   83 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVA   83 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCCcCCccceeccHHHHHHHHhcccceeeeEEccceeecchh
Confidence            789999999999999999998752221    11                 111110    1100000        00124


Q ss_pred             HHHHHHhCCCeEEEeCCCCCHHHHHHHHHh-CCCCC-eEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHh
Q 006654           70 SASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ  146 (636)
Q Consensus        70 ~~~~~L~~G~~VIID~tn~~~~~R~~l~~l-~~~g~-~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~  146 (636)
                      .+...+..|..+|+|.      .+..+..+ ...+. .+.++++.++.+++.+|+.+|..       ..++++-+++..
T Consensus        84 ~i~~~~~~g~~~i~~~------~~~~~~~lk~~~~~~~~~i~~~~~~~e~l~~RL~~Rg~-------~~~~~I~~Rl~~  149 (186)
T d1gkya_          84 SVKQVSKSGKTCILDI------DMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGT-------ETEESINKRLSA  149 (186)
T ss_dssp             HHHHHHHHTSEEEEEC------CHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHSC-------SCHHHHHHHHHH
T ss_pred             hHHHHhcCCCeEEecc------hHHHHHHHHHhhcccceEEEecCCcHHHHHHHHHhhcc-------chhHHHHHHHHH
Confidence            5567778899999997      33334344 33333 33566678889999999999976       345566666654

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.37  E-value=2.3e-06  Score=81.26  Aligned_cols=107  Identities=21%  Similarity=0.178  Sum_probs=63.2

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHc---CCCeEEee--------hhhh----cCCC------CCcH-----------HHHH
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSS---ARPWARIC--------QDTI----NKGK------SGTK-----------VQCL   68 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is--------~D~i----r~~~------~~~~-----------~~~~   68 (636)
                      .+|++-|++||||||+++.|++.+   |.....+.        ...+    ....      ....           ....
T Consensus         3 kfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~~~ep~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   82 (210)
T d4tmka_           3 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQLVE   82 (210)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEecCCCCccchhhhHHHHhccccccccccchHHHHHHHHHHHHHHHH
Confidence            578999999999999999999765   22222221        0111    1110      0100           1112


Q ss_pred             HHHHHHHhCCCeEEEeCCCC------------CHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           69 TSASSALKKGKSVFLDRCNL------------EREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        69 ~~~~~~L~~G~~VIID~tn~------------~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      ..+..+|.+|..||+|...+            ....-..+... .....+=.+++|++|.+++.+|+.+|..
T Consensus        83 ~~i~~~l~~~~~vi~DRy~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pdl~i~Ld~~~e~~~~Ri~~R~~  154 (210)
T d4tmka_          83 TVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGE  154 (210)
T ss_dssp             HTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSS
T ss_pred             HHHHHHHHcCCcccccchhhhhhhhhccccccchhHHHHHHHHhhcCCCCceEEEecchHHHHHHHhhhccc
Confidence            44567889999999997321            11222222222 1111122588999999999999999975

>d2acfa1 c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SARS coronavirus [TaxId: 227859]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Replicase polyprotein 1ab
species: SARS coronavirus [TaxId: 227859]

Probab=98.36  E-value=2.8e-08  Score=92.80  Aligned_cols=115  Identities=11%  Similarity=0.067  Sum_probs=77.7

Q ss_pred             ccCCCCCchhhHHHHHHHHhhcC---CCCCCCCCCcccCCCCCCcccccccccccCcceecccccccchhhcccCChhhh
Q 006654          189 SFGQKNPDAKIQLGIMKFLKKVD---APSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVA  265 (636)
Q Consensus       189 c~~~~~~~~~v~~~i~k~l~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  265 (636)
                      -.+. +++.++|.+|.+-+++..   ....+|. ++        .|.+.++ ++...|++.+.+..  ....+++..++.
T Consensus        47 Gvs~-AI~~~aG~~l~~e~~~~~~~~g~~~~G~-~v--------~t~g~~l-~k~IiH~v~P~~~~--~~~~~ll~~~~~  113 (168)
T d2acfa1          47 GVAG-ALNKATNGAMQKESDDYIKLNGPLTVGG-SC--------LLSGHNL-AKKCLHVVGPNLNA--GEDIQLLKAAYE  113 (168)
T ss_dssp             HHHH-HHHHHTTTHHHHHHHHHHHHHCCCCTTC-EE--------EEECTTT-CSEEEEECCCCGGG--TCCTTHHHHHHH
T ss_pred             hHHH-HHHHHhCHHHHHHHHHHHHhcCCCcCCC-eE--------eccCcCc-chhheeecCCCccc--ccHHHHHHHHHH
Confidence            3445 788899999987776531   1234443 11        1334444 56788888887765  444455555666


Q ss_pred             hhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCCeEEEEeccCcchhhh
Q 006654          266 SVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLTQGSKIL  328 (636)
Q Consensus       266 s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~~~~~v~~~~~~~s~~L  328 (636)
                      ++      ++++|||||+||||+||||.++||+++++++++      .+.+|..|...|...+
T Consensus       114 ~~------~~~~sIA~PaigtG~~g~p~~~~a~~~~~~v~~------~V~fv~~d~~~~~~~~  164 (168)
T d2acfa1         114 NF------NSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRT------QVYIAVNDKALYEQVV  164 (168)
T ss_dssp             GG------GGSSEEEECCTTCGGGCCCHHHHHHHHHHHCCS------EEEEEESCHHHHHHHH
T ss_pred             hh------ccCceEEecccccCCCCCChHHHHHHHHHHHHH------hEEEEECCHHHHHHHH
Confidence            54      477899999999999999999999999999873      2555555544444444

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=1.6e-06  Score=82.33  Aligned_cols=115  Identities=17%  Similarity=0.277  Sum_probs=70.7

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCC--------CeEEeehhhhcCCC--------------CC-----cHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSAR--------PWARICQDTINKGK--------------SG-----TKVQCLTSA   71 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~--------~~~~Is~D~ir~~~--------------~~-----~~~~~~~~~   71 (636)
                      .|.+|.+.|++||||||+|+.|++.++.        ....|++|.+....              +.     ....+.+.+
T Consensus         1 ~P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   80 (213)
T d1uj2a_           1 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILKTL   80 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEeccccccccchhhhhhhhhcccccCCcHHHHHHHHHhhh
Confidence            3789999999999999999999998762        24568888763210              00     122222332


Q ss_pred             HHHHhCC-------------------------CeEEEeCCCC-CHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhc
Q 006654           72 SSALKKG-------------------------KSVFLDRCNL-EREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKR  125 (636)
Q Consensus        72 ~~~L~~G-------------------------~~VIID~tn~-~~~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R  125 (636)
                       ..+..|                         ..+|+++... ....-..+.++        .+++++|.+++.+|...|
T Consensus        81 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiveg~~~l~~~~l~~~~D~--------~i~v~~~~~~~~~R~~~R  151 (213)
T d1uj2a_          81 -KEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQEVRDLFQM--------KLFVDTDADTRLSRRVLR  151 (213)
T ss_dssp             -HHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSHHHHHHCSE--------EEEEECCHHHHHHHHHHH
T ss_pred             -hhhhcCCcccccccccccccccCceEEecccceEEecchhhhccHHHHhhhhe--------eeeecCCHHHHHHHHHHH
Confidence             233333                         2367777543 22222233233        789999999999999988


Q ss_pred             ccccCCCCCCChHHHHHHHH
Q 006654          126 IEHEGNLQGGKAAAVVNRML  145 (636)
Q Consensus       126 ~~~~~~~~~~vp~evi~rm~  145 (636)
                      ......   ...++++..+.
T Consensus       152 d~~~rg---~~~e~~~~~~~  168 (213)
T d1uj2a_         152 DISERG---RDLEQILSQYI  168 (213)
T ss_dssp             HHHHSC---CCHHHHHHHHH
T ss_pred             HHHHcC---CCHHHHHHHHH
Confidence            654321   34555555444

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=7.4e-07  Score=85.49  Aligned_cols=109  Identities=17%  Similarity=0.187  Sum_probs=61.7

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeeh--------hhhc---CCCCC-cH-----------HHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ--------DTIN---KGKSG-TK-----------VQCLTSAS   72 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~--------D~ir---~~~~~-~~-----------~~~~~~~~   72 (636)
                      +..+|++.|+.||||||+++.|++.+   +..+..+..        ..++   ..... ..           .+....+.
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~~p~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~r~~~~~~i~   81 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVPLIK   81 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCcccchhhhhhhhcccccchhhhhhHHHHHHHHHHHhHH
Confidence            34689999999999999999998865   333333320        1111   11111 11           01125567


Q ss_pred             HHHhCCCeEEEeCCCCCHHHH--------HHHHHh--CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           73 SALKKGKSVFLDRCNLEREQR--------TDFVKL--GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        73 ~~L~~G~~VIID~tn~~~~~R--------~~l~~l--~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      .+|.+|..||+|...++.-..        ..|...  .....+=.+|+|++|.+++.+|...|..
T Consensus        82 ~~l~~g~~VI~DRy~~s~~ay~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~~~  146 (209)
T d1nn5a_          82 EKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHE  146 (209)
T ss_dssp             HHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC-----C
T ss_pred             HHhhcccceeecchhhhhhhhhhhccCccHHHHHHHhccCCCCceeeeecccHHHHhhhhccccc
Confidence            788999999999843322111        122222  2222222688999999999999765543

>d1njra_ c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein Ymr087W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.28  E-value=1.6e-07  Score=93.60  Aligned_cols=120  Identities=8%  Similarity=-0.023  Sum_probs=72.8

Q ss_pred             cCCCCCchhhH-HHHHHHHhhc---CCCCCCCCCCcccC-CCCCCcccccccccccCccee---cccccccch-h----h
Q 006654          190 FGQKNPDAKIQ-LGIMKFLKKV---DAPSNTGSTASSTQ-DPVPPQITEEKNSCLEGQEIT---SLLSDAAGE-E----V  256 (636)
Q Consensus       190 ~~~~~~~~~v~-~~i~k~l~~~---g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~----~  256 (636)
                      +|. +++.++| ..|.+.+++.   +| .++|.....++ +-..+.+.+.++.|.++-|+.   .|.+..... +    .
T Consensus        74 vd~-AI~~a~Gg~~le~~~r~~i~~~~-~pvG~a~iv~~g~~~~~~~~~~nl~~kyVIHaPTMv~P~~~~~~~~~~~~~~  151 (264)
T d1njra_          74 FDK-ALYNYFGGKPFETWFRNQLGGRY-HTVGSATVVDLQRCLEEKTIECRDGIRYIIHVPTVVAPSAPIFNPQNPLKTG  151 (264)
T ss_dssp             HHH-HHHHHHTSHHHHHHHHHHTTTSC-CCTTCCEEEEGGGGGCC----CCTTEEEEEECCCBSCSSSCSCCTTCHHHHT
T ss_pred             HHH-HHHHhhCcHHHHHHHHHHHhhcC-CCCCceEEeccCCccccccccccCCCCEEEECcccccCCCCCCCchHHHHHH
Confidence            434 6666654 4466666542   22 24454111111 111112345688888888873   333322111 1    1


Q ss_pred             cccCChhhhhhhcccCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcC
Q 006654          257 KGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG  312 (636)
Q Consensus       257 ~~~l~~~~~s~l~~~~~~~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~~f~~~~~  312 (636)
                      .+.+-.++.++|. +.+++++|||||+||||+||||.++||++++.++++|+.+++
T Consensus       152 ~~~l~~a~~~~L~-a~e~~i~SIAfPaigTGvgg~p~~~aAr~m~~Ai~~fl~~~~  206 (264)
T d1njra_         152 FEPVFNAMWNALM-HSPKDIDGLIIPGLCTGYAGVPPIISCKSMAFALRLYMAGDH  206 (264)
T ss_dssp             HHHHHHHHHHHHH-TSCTTCSEEEECCTTCSTTCCCHHHHHHHHHHHHHHHHTGGG
T ss_pred             HHHHHHHHHHHHH-HhhcCCCEEEeCccccCCCCcCHHHHHHHHHHHHHHHHHcCC
Confidence            2233445666664 557799999999999999999999999999999999998764

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.22  E-value=2.7e-06  Score=80.03  Aligned_cols=153  Identities=18%  Similarity=0.177  Sum_probs=80.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHc---CCCeEEeeh--------hhhc----CCCCC----cHH--H---------HHHHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ--------DTIN----KGKSG----TKV--Q---------CLTSA   71 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~--------D~ir----~~~~~----~~~--~---------~~~~~   71 (636)
                      +|++.|+.||||||+++.|++.+   |..+..+..        ..++    .....    ...  .         .....
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~~P~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   81 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAVHTI   81 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTTCHHHHHHHHHHTTCSTTGGGCHHHHHHHHHHHHHTTHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCCCCCccchhhhhhhccccccccccchHHHHHHHHHHHHHHHHhH
Confidence            78999999999999999999865   333333321        0010    11100    100  0         11333


Q ss_pred             HHHHhCCCeEEEeCCCCCHHHH-------------HHH-HHh----CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCC
Q 006654           72 SSALKKGKSVFLDRCNLEREQR-------------TDF-VKL----GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQ  133 (636)
Q Consensus        72 ~~~L~~G~~VIID~tn~~~~~R-------------~~l-~~l----~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~  133 (636)
                      ...+..+..+|+|...+.....             ..| ..+    .....+-.+|+|++|.+++.+|+.+|.+......
T Consensus        82 ~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Pd~~i~L~~~~e~~~~Ri~~R~~~~~~~~  161 (208)
T d1gsia_          82 QGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRDPGRA  161 (208)
T ss_dssp             HHHHHHSSEEEEESCHHHHHHHHHHHTTCCTTSHHHHHHHHHHTTTSCCCCCSEEEEECCCHHHHHHHHHHHHHHCTTCC
T ss_pred             HHHhhhcccccccchhhhHHHHHhhccchhhhhhhHHHHHHHHHHHhhccCCceeEEecccHHHHHHHHHhhhccccccc
Confidence            4455678889999843322111             111 111    1112233688999999999999999976432111


Q ss_pred             -C--CChHHHHHHHHhhhcCCCccCCccEEEEeCChhHHHHHHH
Q 006654          134 -G--GKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALD  174 (636)
Q Consensus       134 -~--~vp~evi~rm~~~fe~P~~~Egfd~Viii~~~~~vdaiv~  174 (636)
                       +  +...+.+.+..+.|..-.....-..+.+++...+++++.+
T Consensus       162 ~d~~e~~~~y~~~~~~~Y~~~~~~~~~~~~~vIDa~~~~e~V~~  205 (208)
T d1gsia_         162 RDNYERDAELQQRTGAVYAELAAQGWGGRWLVVGADVDPGRLAA  205 (208)
T ss_dssp             CCTTTTCHHHHHHHHHHHHHHHHHTTTSEEEEECTTCCHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCHHHHHH
Confidence             1  1234555554443322111111134566776666666654

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=98.21  E-value=3e-06  Score=77.51  Aligned_cols=106  Identities=19%  Similarity=0.181  Sum_probs=58.5

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeeh-hhhc-----CCCCC--------c-HHH------HHHHHHHHH-
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQ-DTIN-----KGKSG--------T-KVQ------CLTSASSAL-   75 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~-D~ir-----~~~~~--------~-~~~------~~~~~~~~L-   75 (636)
                      ++|++.|+|||||||+++.|++.++   ..+.+++. |.++     .....        . ...      ....+.+.. 
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKGIAEEAR   81 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCcchHHHHHHHhhhhhhhccccchhhcccCHHHHHHHHHHHHH
Confidence            5789999999999999999998875   23455553 2221     11110        0 010      111122222 


Q ss_pred             -hCCCeEEEeCCCCCHHH-------HHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccccc
Q 006654           76 -KKGKSVFLDRCNLEREQ-------RTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHE  129 (636)
Q Consensus        76 -~~G~~VIID~tn~~~~~-------R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~  129 (636)
                       .....+++|+..+....       ...+.....   +..+++|++|.+++.+|+..|..+.
T Consensus        82 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~l~~~~~~~~~R~~~r~~~~  140 (194)
T d1nksa_          82 AGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEIN---PSVIFLLEADPKIILSRQKRDTTRN  140 (194)
T ss_dssp             HTCSSEEEEEECSEEEETTEEEESSCHHHHHHHC---CSEEEEEECCHHHHHHHHHHCTTTC
T ss_pred             HhCCCcEEEEccCchHHHHHHHHhHHHHHHhhhc---cccceEEecCHHHHHHHHHHhhhcc
Confidence             22345666653221110       111111111   2247899999999999999887654

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=98.19  E-value=9.5e-07  Score=82.49  Aligned_cols=35  Identities=31%  Similarity=0.462  Sum_probs=29.1

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i   56 (636)
                      .|.+|.++|++||||||+|+.| +++|  +.+++.|.+
T Consensus         2 ~p~IIgitG~~gSGKstva~~l-~~~g--~~~~~~D~~   36 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALL-RSWG--YPVLDLDAL   36 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHH-HHTT--CCEEEHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHH-HHCC--CeEEEccHH
Confidence            4889999999999999999988 4577  666777665

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=98.09  E-value=3.3e-06  Score=80.22  Aligned_cols=35  Identities=23%  Similarity=0.301  Sum_probs=28.9

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i   56 (636)
                      |..+|.++|.+||||||+|+.|. ++|  +.++|.|.+
T Consensus         1 M~~iIgITG~igSGKStv~~~l~-~~G--~~vidaD~i   35 (205)
T d1jjva_           1 MTYIVGLTGGIGSGKTTIANLFT-DLG--VPLVDADVV   35 (205)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHHH-TTT--CCEEEHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHH-HCC--CeEEEchHH
Confidence            45688899999999999999775 577  667888776

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=98.05  E-value=5.9e-06  Score=78.66  Aligned_cols=37  Identities=30%  Similarity=0.314  Sum_probs=30.8

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir   57 (636)
                      +|+.+|.++|.+||||||+|+.|. .+|  +.++|.|.+.
T Consensus         1 ~mk~iIgitG~igSGKStv~~~l~-~~G--~~vidaD~i~   37 (208)
T d1vhta_           1 SLRYIVALTGGIGSGKSTVANAFA-DLG--INVIDADIIA   37 (208)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHH-HTT--CEEEEHHHHH
T ss_pred             CCCEEEEEECCCcCCHHHHHHHHH-HCC--CcEEEchHHH
Confidence            467789999999999999999775 667  7788887774

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=98.04  E-value=1.3e-06  Score=82.53  Aligned_cols=37  Identities=19%  Similarity=0.455  Sum_probs=31.9

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh-hhhc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTIN   57 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~-D~ir   57 (636)
                      ++.+|.+.|||||||||+|+.|+++++  +.||++ |.+|
T Consensus         2 ~~piI~I~GppGSGKgT~ak~La~~~g--l~~iStGdLlR   39 (225)
T d1ckea_           2 IAPVITIDGPSGAGKGTLCKAMAEALQ--WHLLDSGAIYR   39 (225)
T ss_dssp             CSCEEEEECCTTSSHHHHHHHHHHHHT--CEEEEHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhC--CcEECHHHHHH
Confidence            345788899999999999999999999  889997 5554

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.86  E-value=3.4e-05  Score=71.63  Aligned_cols=30  Identities=27%  Similarity=0.444  Sum_probs=27.1

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ...+|.+|++.|+.||||||+++.|++.++
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~~l~   34 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEKYKN   34 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            346789999999999999999999999886

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=8.3e-05  Score=68.97  Aligned_cols=27  Identities=15%  Similarity=0.391  Sum_probs=23.9

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      |.++|+|+||+||||+|++++|.++++
T Consensus         2 m~k~ivl~Gpsg~GK~tl~~~L~~~~~   28 (178)
T d1kgda_           2 MRKTLVLLGAHGVGRRHIKNTLITKHP   28 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHhCC
Confidence            456799999999999999999998864

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.83  E-value=1.2e-05  Score=81.69  Aligned_cols=42  Identities=19%  Similarity=0.163  Sum_probs=34.4

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcC-----CCeEEeehhhhc
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTIN   57 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~-----~~~~~Is~D~ir   57 (636)
                      ....|.+|.+.|++||||||+|+.|.+.+.     .....|++|.+.
T Consensus        76 ~~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~  122 (308)
T d1sq5a_          76 GQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL  122 (308)
T ss_dssp             -CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred             CCCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeE
Confidence            345689999999999999999999998763     346778988884

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.80  E-value=6.4e-06  Score=74.46  Aligned_cols=30  Identities=20%  Similarity=0.198  Sum_probs=26.5

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCe
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPW   48 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~   48 (636)
                      .++.|+++|+|||||||+|++|++.++.++
T Consensus         6 ~~K~I~i~G~~GsGKTTla~~La~~~~~~~   35 (192)
T d1lw7a2           6 FAKTVAILGGESSGKSVLVNKLAAVFNTTS   35 (192)
T ss_dssp             TCEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence            467899999999999999999999998433

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.80  E-value=6e-06  Score=78.28  Aligned_cols=35  Identities=20%  Similarity=0.351  Sum_probs=29.7

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i   56 (636)
                      +.+|.+-|||||||||+|+.|+++++  +.||++.++
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~~lg--~~~istGdl   37 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAKDFG--FTYLDTGAM   37 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHHHC--CEEEEHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC--CcEECHHHH
Confidence            34566779999999999999999999  889997443

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.79  E-value=5.6e-05  Score=72.09  Aligned_cols=110  Identities=15%  Similarity=0.136  Sum_probs=57.0

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh--------hhhc----CCCCC-cH-H----------HHHHHHHH
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ--------DTIN----KGKSG-TK-V----------QCLTSASS   73 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~--------D~ir----~~~~~-~~-~----------~~~~~~~~   73 (636)
                      ++..+|++-|+-||||||+++.|++.+......+..        ..++    ..... .. .          +....+..
T Consensus         1 ~kGk~I~iEG~DGsGKST~~~~L~~~L~~~~~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~~llf~a~r~~~~~~i~~   80 (214)
T d1tmka_           1 GRGKLILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVDKIKK   80 (214)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHTTTSEEEEESSCTTSHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTTHHHHHH
T ss_pred             CCeEEEEEECCCCCcHHHHHHHHHHHHHhCCEEEEECCCCchHhHhHHHhhhhccccccchHHHHHHHHHHHHHHHHHHH
Confidence            356789999999999999999999988643333321        1111    11111 11 0          11244667


Q ss_pred             HHhCCCeEEEeCCCCCHHHH----------HHH-HHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           74 ALKKGKSVFLDRCNLEREQR----------TDF-VKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        74 ~L~~G~~VIID~tn~~~~~R----------~~l-~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      ++..|..||+|...++.-.+          ..| ..+ ...-.+=.+++|++|.++...|...|..
T Consensus        81 ~l~~g~~VI~DRy~~S~~ayq~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~~~~~~r~~~~~~  146 (214)
T d1tmka_          81 DLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGD  146 (214)
T ss_dssp             HHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECC----------CCS
T ss_pred             HHhcCCeeEecCccccchHhhhhcccchHHHHHHHHHHhcCCCcceehhccccHHHHHHHhcccch
Confidence            78899999999843322111          112 222 2111122578999998887777655544

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=2.2e-05  Score=77.45  Aligned_cols=62  Identities=21%  Similarity=0.267  Sum_probs=45.6

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCC
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGK   79 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~   79 (636)
                      ..|+-++|.||||+|||++|+.++++++.++..++...+...+.+.....+..+-+..+...
T Consensus        43 ~~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~~~l~~~~~g~~~~~l~~~f~~A~~~~  104 (256)
T d1lv7a_          43 KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAA  104 (256)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHHHTTC
T ss_pred             CCCCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEEhHHhhhcchhHHHHHHHHHHHHHHHcC
Confidence            34677899999999999999999999998888888877766666654443434333333333

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.63  E-value=3.8e-05  Score=75.24  Aligned_cols=68  Identities=21%  Similarity=0.287  Sum_probs=48.2

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCC--eEEEeC
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGK--SVFLDR   85 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~--~VIID~   85 (636)
                      ..|.-|+|.||||+|||++|+.++++++.++..++...+...+.+.....++.+-+..+...  -++||.
T Consensus        40 ~~~~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~l~~~f~~a~~~~p~Ii~iDe  109 (247)
T d1ixza_          40 RIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDE  109 (247)
T ss_dssp             CCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEET
T ss_pred             CCCceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhhhccccHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence            34566899999999999999999999998888888877776666655444444333333322  345565

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.62  E-value=3.5e-05  Score=77.17  Aligned_cols=39  Identities=21%  Similarity=0.230  Sum_probs=28.7

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC---CCeEEeehhhhc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTIN   57 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~---~~~~~Is~D~ir   57 (636)
                      +..+|.++|.+||||||+++.|.+.++   ...+.|+.|.+.
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfy   44 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH   44 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCC
Confidence            334899999999999999999877653   456789999884

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=0.00028  Score=67.30  Aligned_cols=28  Identities=21%  Similarity=0.274  Sum_probs=25.5

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSAR   46 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~   46 (636)
                      .|++|++-|+-||||||+++.|++.++.
T Consensus         1 ~pk~IviEG~~GsGKST~~~~L~~~l~~   28 (241)
T d2ocpa1           1 GPRRLSIEGNIAVGKSTFVKLLTKTYPE   28 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHhh
Confidence            3789999999999999999999998863

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.44  E-value=9.4e-05  Score=72.57  Aligned_cols=67  Identities=22%  Similarity=0.331  Sum_probs=47.3

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHH-HHHHhCCCe-EEEeC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSA-SSALKKGKS-VFLDR   85 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~-~~~L~~G~~-VIID~   85 (636)
                      .|+=++|.||||+|||+++++++...+.++..++...+...+.+.....+..+ ..+-..... +++|.
T Consensus        37 ~~~giLL~GppGtGKT~l~~ala~~~~~~~~~i~~~~l~~~~~g~~~~~l~~~f~~A~~~~p~il~iDe  105 (258)
T d1e32a2          37 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDE  105 (258)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHTTCEEEEECHHHHTTSCTTHHHHHHHHHHHHHHHTCSEEEEESS
T ss_pred             CCceeEEecCCCCCchHHHHHHHHHhCCeEEEEEchhhcccccccHHHHHHHHHHHHHhcCCeEEEehh
Confidence            46668999999999999999999999988888888777777666544433333 222233333 45555

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.41  E-value=0.00018  Score=68.83  Aligned_cols=42  Identities=21%  Similarity=0.398  Sum_probs=34.1

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcC
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINK   58 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~   58 (636)
                      +.+|.+|+|+||+|+||||.+.+|+..+   +.....|..|.+|.
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~   52 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA   52 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeeccccc
Confidence            5689999999999999999888887544   45677788888863

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.40  E-value=0.0001  Score=72.73  Aligned_cols=67  Identities=16%  Similarity=0.228  Sum_probs=47.9

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHH-HHHhCCCe-EEEeC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSAS-SALKKGKS-VFLDR   85 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~-~~L~~G~~-VIID~   85 (636)
                      .+.-|+|.||||+|||++++.++..++.++..++...+...+.+.....+..+- .+-..... +++|.
T Consensus        40 ~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~f~~A~~~~p~il~ide  108 (265)
T d1r7ra3          40 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDE  108 (265)
T ss_dssp             CCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEECHHHHHTSCTTTHHHHHHHHHHHHHHTCSEEEEESS
T ss_pred             CCCeEEEECCCCCcchhHHHHHHHHhCCcEEEEEHHHhhhccccchHHHHHHHHHHHHhcCCcceeHHh
Confidence            455689999999999999999999999888888887877766665544443332 23333333 45666

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=0.00034  Score=66.83  Aligned_cols=41  Identities=24%  Similarity=0.338  Sum_probs=33.9

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhc
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir   57 (636)
                      ...|.+|+|+||+|+||||.+.+|+..+   +.....|..|.+|
T Consensus         6 ~~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R   49 (211)
T d2qy9a2           6 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR   49 (211)
T ss_dssp             SCTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTC
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccccc
Confidence            4568999999999999999988888544   4567788888886

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.36  E-value=0.0005  Score=65.39  Aligned_cols=41  Identities=27%  Similarity=0.237  Sum_probs=32.9

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhc
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir   57 (636)
                      ...+.+|+|+||+|+||||.+.+|+..+   +.....++.|.+|
T Consensus         7 ~~~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R   50 (207)
T d1ls1a2           7 LKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR   50 (207)
T ss_dssp             CCSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccccc
Confidence            3457889999999999999988887554   4556788888876

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.32  E-value=0.00024  Score=69.22  Aligned_cols=41  Identities=27%  Similarity=0.539  Sum_probs=33.3

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG   59 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~   59 (636)
                      ++.=|+|.||||+|||++|+.++...+.++..++.-.+..+
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~g   79 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIG   79 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTT
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhhccccccccccccccccc
Confidence            45668999999999999999999999988888875443333

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.28  E-value=0.00019  Score=68.65  Aligned_cols=64  Identities=17%  Similarity=0.289  Sum_probs=43.3

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCCC
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNL   88 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn~   88 (636)
                      +.-++|.||||+||||+|+.+++.++..+..++.-.+.     ........+.+.+..+..+++|....
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~iDe~~~   98 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIE-----KPGDLAAILANSLEEGDILFIDEIHR   98 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHHTCCEEEEETTTCC-----SHHHHHHHHHTTCCTTCEEEEETGGG
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCeEeccCCccc-----cchhhHHHHHhhccCCCeeeeecccc
Confidence            34577999999999999999999998776666643321     22233344444555666777887543

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.26  E-value=0.00034  Score=66.81  Aligned_cols=41  Identities=17%  Similarity=0.212  Sum_probs=29.1

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhc
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir   57 (636)
                      ...|.+|+|+||+|+||||.+.+|+..+   +.....|..|.+|
T Consensus         9 ~k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R   52 (211)
T d1j8yf2           9 DKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYR   52 (211)
T ss_dssp             SSSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccc
Confidence            3468999999999999999888887554   4557778888876

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=97.25  E-value=0.0016  Score=66.06  Aligned_cols=24  Identities=25%  Similarity=0.338  Sum_probs=19.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcC
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      .|.+-|+-||||||+++.|++.+.
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC---
T ss_pred             EEEEECCcCCCHHHHHHHHHHHhC
Confidence            488999999999999999987764

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.17  E-value=0.00031  Score=66.96  Aligned_cols=62  Identities=18%  Similarity=0.333  Sum_probs=40.1

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCCC
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNL   88 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn~   88 (636)
                      .-++|.||||+||||+|+.++++++..+..++.-..+     .... +..+......+..+++|-...
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~ide~~~   97 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV-----KQGD-MAAILTSLERGDVLFIDEIHR   97 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCC-----SHHH-HHHHHHHCCTTCEEEEETGGG
T ss_pred             CeEEEECCCCCcHHHHHHHHHhccCCCcccccCcccc-----cHHH-HHHHHHhhccCCchHHHHHHH
Confidence            3478999999999999999999999766666542221     1111 222233344556677777543

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.12  E-value=0.00047  Score=65.59  Aligned_cols=43  Identities=26%  Similarity=0.264  Sum_probs=34.4

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhhcCC
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKG   59 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~ir~~   59 (636)
                      .++|.+|+|+||+||||||.+.+|+..+   +.....|..|.+|.+
T Consensus         3 ~~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~g   48 (207)
T d1okkd2           3 EPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAA   48 (207)
T ss_dssp             CCSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEecccccc
Confidence            3577899999999999999888887553   456778888888754

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.00012  Score=65.35  Aligned_cols=24  Identities=21%  Similarity=0.390  Sum_probs=21.6

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHc
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      .++.++|+||||||||+++|++.+
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~l   26 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPAL   26 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHH
Confidence            468999999999999999999764

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.09  E-value=0.00092  Score=60.05  Aligned_cols=23  Identities=30%  Similarity=0.729  Sum_probs=21.2

Q ss_pred             EEEEccCCCcHHHHHHHHHHHcC
Q 006654           23 VIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      |+|+|+|||||||+++.++..++
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~   25 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEECCCCcHHHHHHHHHHhcCC
Confidence            78999999999999999998765

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=97.02  E-value=0.0039  Score=63.23  Aligned_cols=27  Identities=22%  Similarity=0.279  Sum_probs=24.1

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ....|++-|+-||||||+++.|++.++
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHHhc
Confidence            456899999999999999999998875

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.94  E-value=0.00024  Score=68.07  Aligned_cols=36  Identities=19%  Similarity=0.192  Sum_probs=30.0

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehh
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQD   54 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D   54 (636)
                      ++..++|.||||+||||+|+.+++.++..+..++..
T Consensus        51 ~~~~lll~GPpG~GKTt~a~~la~~~~~~~~~~~~~   86 (253)
T d1sxja2          51 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNAS   86 (253)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHhhhhccccc
Confidence            445789999999999999999999998666666643

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=96.92  E-value=0.00063  Score=68.85  Aligned_cols=66  Identities=15%  Similarity=0.214  Sum_probs=47.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcC--CCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCC
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN   87 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~--~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn   87 (636)
                      ++++.||||+|||.+|+.|+.+.+  .++..++..++...+.|..+..++.+-+..+...-+++|-.+
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~~~~G~~e~~~~~~f~~a~~~~ilf~DEid  192 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDSLK  192 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCSEEEEECCT
T ss_pred             eEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhhhcccchHHHHHHHHHHHHhhccEEEeehhh
Confidence            455689999999999999999875  456677777777788887766555444444455566777644

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.91  E-value=0.0003  Score=70.67  Aligned_cols=40  Identities=15%  Similarity=0.435  Sum_probs=34.3

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK   58 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~   58 (636)
                      +|.-++|+||||+|||.+|+++++.++.++..++.-.+.+
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~s~~~~   87 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE   87 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSS
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhccccchhccccccccc
Confidence            4566789999999999999999999998888888766643

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.00088  Score=63.29  Aligned_cols=26  Identities=23%  Similarity=0.273  Sum_probs=23.7

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      .++|++-|+-||||||+++.|++.+.
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            46899999999999999999998875

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=96.83  E-value=0.0038  Score=63.25  Aligned_cols=24  Identities=33%  Similarity=0.414  Sum_probs=22.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcC
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      .|.+-|+-||||||+++.|++.+.
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~   30 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFA   30 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            489999999999999999998865

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.00033  Score=62.63  Aligned_cols=24  Identities=29%  Similarity=0.483  Sum_probs=21.2

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHc
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +.|+|.|+||+||||+++++++.+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Confidence            358999999999999999998765

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.67  E-value=0.00078  Score=67.09  Aligned_cols=41  Identities=17%  Similarity=0.230  Sum_probs=31.7

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHc------CCCeEEeehhhhc
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS------ARPWARICQDTIN   57 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~------~~~~~~Is~D~ir   57 (636)
                      ...|.+|-+.|++||||||+|..|.+.+      ......|+.|++.
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY   70 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY   70 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCCC
Confidence            3458899999999999999999876543      2345678888873

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.50  E-value=0.00085  Score=70.86  Aligned_cols=40  Identities=15%  Similarity=0.435  Sum_probs=35.1

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK   58 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~   58 (636)
                      .|.-|+|+||+|||||.+|+.||+.++.||+.++.-.+-+
T Consensus        48 ~ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~daT~fTe   87 (443)
T d1g41a_          48 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE   87 (443)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC-
T ss_pred             ccccEEEECCCCCCHHHHHHHHHHHhCCCEEEeecceeee
Confidence            4678999999999999999999999999999888766653

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.45  E-value=0.00098  Score=62.91  Aligned_cols=100  Identities=13%  Similarity=0.057  Sum_probs=52.6

Q ss_pred             EEEEccCCCcHHHHHHHHHHHcCCC-----eEEeehhhhcCCCCCcHHHHHHHHHHHHhC--------CCeEEEeCCC-C
Q 006654           23 VIMVGAPGSGKSTFCEHVMRSSARP-----WARICQDTINKGKSGTKVQCLTSASSALKK--------GKSVFLDRCN-L   88 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~~~~~-----~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~--------G~~VIID~tn-~   88 (636)
                      ++|.||||+||||+|+.++++++..     +..++..+.     ................        .+.+|+|... +
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~kviiiDe~d~~  113 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDD-----RGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSM  113 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSC-----CSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGS
T ss_pred             EEEECCCCCCchhhHHHHHHHHhcccccccccccccccc-----CCceehhhHHHHHHHhhccCCCcceEEEEEeccccc
Confidence            6789999999999999999876521     112221111     1111112222222221        2357888754 4


Q ss_pred             CHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           89 EREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        89 ~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      .......++.. ........++....+..-+...+..|..
T Consensus       114 ~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i~~~l~sr~~  153 (224)
T d1sxjb2         114 TAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCA  153 (224)
T ss_dssp             CHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred             chhHHHHHhhhccccccceeeeeccCchhhhhhHHHHHHH
Confidence            44444444444 3333344455555555555556666654

>d2fg1a1 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein BT1257
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=96.39  E-value=0.00033  Score=62.89  Aligned_cols=31  Identities=13%  Similarity=0.100  Sum_probs=27.4

Q ss_pred             CCCccccccCccCCCCCChHHHHHHHHHHHH
Q 006654          275 DVPTLAFPSLSTSDFQFNNEKASDVIIEKVE  305 (636)
Q Consensus       275 ~~~SiAfPaIStG~~gfP~~~aa~Iiv~tv~  305 (636)
                      +..|||||+||||+||||.++++++|.+.+.
T Consensus       113 ~~~sIa~P~Ig~Gi~G~~w~~v~~ii~~~~~  143 (154)
T d2fg1a1         113 HKASVHMPRIGCGLAGGKWELMEQIIKEELI  143 (154)
T ss_dssp             HTCEEEECCTTCSTTCCCHHHHHHHHHHHTG
T ss_pred             cCcEEEeCcccCCCCCCCHHHHHHHHHHHhc
Confidence            4579999999999999999999999876654

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.30  E-value=0.0013  Score=62.62  Aligned_cols=34  Identities=24%  Similarity=0.356  Sum_probs=29.7

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcCCCeEEee-hhhh
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARIC-QDTI   56 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is-~D~i   56 (636)
                      .+|.|.|..||||||+|+.|++.+|  +.+++ .|.+
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~g--~~~i~~aD~i   36 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNYS--AVKYQLAGPI   36 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSC--EEECCTTHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCC--CeEEcccHHH
Confidence            5789999999999999999999988  88887 4655

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.29  E-value=0.0049  Score=58.22  Aligned_cols=22  Identities=18%  Similarity=0.457  Sum_probs=20.0

Q ss_pred             EEEEccCCCcHHHHHHHHHHHc
Q 006654           23 VIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      ++|.|+||||||.|+++++.++
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~   60 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEA   60 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            6899999999999999998765

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.27  E-value=0.0021  Score=60.38  Aligned_cols=23  Identities=26%  Similarity=0.530  Sum_probs=20.8

Q ss_pred             EEEEccCCCcHHHHHHHHHHHcC
Q 006654           23 VIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ++|.||||+||||+++.+++++.
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHHhh
Confidence            67899999999999999998854

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.18  E-value=0.0018  Score=60.86  Aligned_cols=33  Identities=30%  Similarity=0.411  Sum_probs=25.7

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcC--CCeEEeeh
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQ   53 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~--~~~~~Is~   53 (636)
                      .+|++.|++|||||||.++|.+.+.  +....|+.
T Consensus         1 ~vi~v~G~~GsGKTTLl~~ll~~~~~~~~~~ivn~   35 (244)
T d1yrba1           1 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNL   35 (244)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEEC
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhCCeEEEEec
Confidence            3789999999999999999987553  34555653

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.06  E-value=0.0015  Score=58.66  Aligned_cols=25  Identities=28%  Similarity=0.320  Sum_probs=21.6

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ++|.++|.+|||||||+.+|++++.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~   26 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAV   26 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            3678999999999999999987653

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.04  E-value=0.0015  Score=67.13  Aligned_cols=37  Identities=16%  Similarity=0.154  Sum_probs=31.1

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEee
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARIC   52 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is   52 (636)
                      ..+++..+++.||||+|||++|..++..++..+..++
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~in  186 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVN  186 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCS
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEE
Confidence            4456678999999999999999999999996665554

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.00  E-value=0.0017  Score=61.35  Aligned_cols=25  Identities=28%  Similarity=0.426  Sum_probs=21.8

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ..++|.||||+||||+|+.++++..
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHH
Confidence            3478999999999999999998753

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.99  E-value=0.007  Score=57.17  Aligned_cols=38  Identities=13%  Similarity=0.259  Sum_probs=30.0

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i   56 (636)
                      .+..+++.|++|+||||+++++++..+..+..++....
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~~~~~~i~~~~~   65 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKF   65 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHCCCCeEEEEeccc
Confidence            34578899999999999999999988866655654333

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.80  E-value=0.0042  Score=62.30  Aligned_cols=37  Identities=14%  Similarity=0.160  Sum_probs=32.4

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhc
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir   57 (636)
                      ..++++||||+|||.+|+.|++.++.+++.+|.-.+.
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~~l~~~~i~~d~s~~~   89 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYM   89 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCS
T ss_pred             eEEEEECCCcchhHHHHHHHHhhccCCeeEecccccc
Confidence            3788999999999999999999999888888876654

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.73  E-value=0.0092  Score=58.53  Aligned_cols=67  Identities=16%  Similarity=0.238  Sum_probs=41.8

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC----------CCeEEeehhhhcC--CCCCcHHHHHHHHHHHHhC-CCeE-EEe
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA----------RPWARICQDTINK--GKSGTKVQCLTSASSALKK-GKSV-FLD   84 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~----------~~~~~Is~D~ir~--~~~~~~~~~~~~~~~~L~~-G~~V-IID   84 (636)
                      .+.-++|+|+||+|||++++.++++..          .....++...+-.  ...+.++..+..+...+.. |..+ ++|
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~liag~~~~g~~e~r~~~i~~~~~~~~~iIlfiD  117 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFID  117 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEET
T ss_pred             ccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeechHhccCccchhHHHHHHHHHHHhhccCCceEEec
Confidence            345678999999999999999987631          1233344434433  3567787766666666644 4443 356


Q ss_pred             C
Q 006654           85 R   85 (636)
Q Consensus        85 ~   85 (636)
                      .
T Consensus       118 e  118 (268)
T d1r6bx2         118 E  118 (268)
T ss_dssp             T
T ss_pred             c
Confidence            5

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.68  E-value=0.0029  Score=59.95  Aligned_cols=28  Identities=18%  Similarity=0.293  Sum_probs=24.4

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ..|..++|.||||+||||+++.+++.+.
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHh
Confidence            4566789999999999999999998864

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.43  E-value=0.022  Score=53.08  Aligned_cols=111  Identities=13%  Similarity=0.165  Sum_probs=61.9

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcCCC------eEEeeh-----------hhhc---CCC--CCcHHHHHHHHHH
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARP------WARICQ-----------DTIN---KGK--SGTKVQCLTSASS   73 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~------~~~Is~-----------D~ir---~~~--~~~~~~~~~~~~~   73 (636)
                      ...-|.-+++.|+||+||||+|+.+++.+-..      .+..+.           |.+.   ...  ....++ ++.+.+
T Consensus        20 ~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~-ir~l~~   98 (207)
T d1a5ta2          20 AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDA-VREVTE   98 (207)
T ss_dssp             TTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHH-HHHHHH
T ss_pred             cCCcCeEEEEECCCCCcHHHHHHHHHHhcccccccccccccccchhhhhhhccccccchhhhhhcccccccch-hhHHhh
Confidence            33446678999999999999999999875210      000010           0000   011  112222 233334


Q ss_pred             HHhC-----C-CeEEEeCCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           74 ALKK-----G-KSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        74 ~L~~-----G-~~VIID~tn-~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                      .+..     + +.+|+|... ++......++++ .+....+.+|...-....+..-+..|..
T Consensus        99 ~~~~~~~~~~~kviIide~d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll~tI~SRc~  160 (207)
T d1a5ta2          99 KLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCR  160 (207)
T ss_dssp             HTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred             hhhhccccCccceEEechhhhhhhhhhHHHHHHHHhhcccceeeeeecChhhhhhhhcceeE
Confidence            4331     2 247888754 566666677777 6665555666666565556666666653

>d1kpfa_ d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Protein kinase C inhibitor-1, PKCI-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.0032  Score=53.47  Aligned_cols=32  Identities=13%  Similarity=0.196  Sum_probs=29.2

Q ss_pred             CCCeEEEcCcEEEeccCCCCCcccccccCCCC
Q 006654          575 KDDLLEISDDVVVLNDLYPKVHPSDNLPPGTL  606 (636)
Q Consensus       575 ~~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~~  606 (636)
                      +..++|-||.++++.|.||.+.-|+||+||.-
T Consensus        13 p~~ivyede~~~af~D~~P~~~gH~LViPk~H   44 (111)
T d1kpfa_          13 PAKIIFEDDRCLAFHDISPQAPTHFLVIPKKH   44 (111)
T ss_dssp             CCCEEEECSSEEEEECSSCSSSEEEEEEESSC
T ss_pred             CccEEEeCCCEEEEecCCCCCCceEEEeecch
Confidence            34599999999999999999999999999964

>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Hypothetical protein YorR
species: Bacillus subtilis [TaxId: 1423]

Probab=95.37  E-value=0.038  Score=46.42  Aligned_cols=103  Identities=19%  Similarity=0.233  Sum_probs=64.2

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeCCCCCH----------
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLER----------   90 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~tn~~~----------   90 (636)
                      .+|+|-||-.+=|||.|.+|.+++.  +..|-...+.-...+ .+.++.. -..|....+||||.+.+..          
T Consensus         1 tliilegpdccfkstvaaklskelk--ypiikgssfelaksg-neklfeh-fnkladednviidrfvysnlvyakkfkdy   76 (164)
T d2axpa1           1 TLIILEGPDCCFKSTVAAKLSKELK--YPIIKGSSFELAKSG-NEKLFEH-FNKLADEDNVIIDRFVYSNLVYAKKFKDY   76 (164)
T ss_dssp             CEEEEECCSSSCHHHHHHHHHHHHT--CCEEECCCHHHHHHC-HHHHHHH-HHHHTTCCSEEEESCHHHHHHHTTTBSSC
T ss_pred             CeEEEeCCchhhHHHHHHHHHhhhc--CceecCchhhhhhcc-CHHHHHH-HHhhccccceeeehhhhhhhHHHhhcccc
Confidence            3789999999999999999999988  444443222100111 1112222 2446677889999842211          


Q ss_pred             ----HHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 006654           91 ----EQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (636)
Q Consensus        91 ----~~R~~l~~l~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~  128 (636)
                          +...++++- +......++||..+..++.+|+.-|+..
T Consensus        77 silterqlrfied-kikakakvvylhadpsvikkrlrvrgde  117 (164)
T d2axpa1          77 SILTERQLRFIED-KIKAKAKVVYLHADPSVIKKRLRVRGDE  117 (164)
T ss_dssp             CCCCHHHHHHHHH-HHTTTEEEEEEECCHHHHHHHHHHHTCS
T ss_pred             eehhHHHHHHHHH-HhhhheeEEEEecChHHHHHHhcccccc
Confidence                222233322 1122345889999999999999999874

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.34  E-value=0.0037  Score=58.64  Aligned_cols=23  Identities=22%  Similarity=0.486  Sum_probs=20.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHc
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      .++|.||||+||||+++.+++++
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHHH
Confidence            37899999999999999999874

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.24  E-value=0.0036  Score=59.39  Aligned_cols=23  Identities=30%  Similarity=0.606  Sum_probs=21.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHc
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      -++|.||||+||||+|+.+++.+
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHhh
Confidence            47899999999999999999875

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.13  E-value=0.0036  Score=59.61  Aligned_cols=23  Identities=22%  Similarity=0.413  Sum_probs=20.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHc
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      ++++.||||+||||+++.+++.+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            45667999999999999999875

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.07  E-value=0.0052  Score=55.37  Aligned_cols=26  Identities=19%  Similarity=0.382  Sum_probs=23.1

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      ...++++.|+|||||||||-+++...
T Consensus        22 ~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          22 TGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999998764

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.00  E-value=0.0062  Score=58.04  Aligned_cols=127  Identities=13%  Similarity=0.156  Sum_probs=65.4

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeeh------------------hhhc--CCCCCcHHHHHHHHHHHHh-
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ------------------DTIN--KGKSGTKVQCLTSASSALK-   76 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~------------------D~ir--~~~~~~~~~~~~~~~~~L~-   76 (636)
                      .-|..++|.|+||+||||+|+.+++.+.... ..+.                  |.+.  .......+. ++.+.+.+. 
T Consensus        32 ~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~-ir~~~~~~~~  109 (239)
T d1njfa_          32 RIHHAYLFSGTRGVGKTSIARLLAKGLNCET-GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVED-TRDLLDNVQY  109 (239)
T ss_dssp             CCCSEEEEECSTTSSHHHHHHHHHHHHHCTT-CSCSSCCSCSHHHHHHHHTCCTTEEEEETTCSSSHHH-HHHHHHSCCC
T ss_pred             CCCeeEEEECCCCCcHHHHHHHHHHHhcCcc-ccccCccccchHHHHHHcCCCCeEEEecchhcCCHHH-HHHHHHHHHh
Confidence            3466788999999999999999998764211 0000                  0000  000011122 122222221 


Q ss_pred             ---CC--CeEEEeCCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhh
Q 006654           77 ---KG--KSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQK  147 (636)
Q Consensus        77 ---~G--~~VIID~tn-~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~~~~~~~~~vp~evi~rm~~~  147 (636)
                         .|  +.+|||... ++......+++. .+......++...-....+...+..|...-. .+...+.++..++...
T Consensus       110 ~~~~~~~kviiIde~d~l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i~~~i~SRc~~i~-~~~~~~~~i~~~l~~i  186 (239)
T d1njfa_         110 APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH-LKALDVEQIRHQLEHI  186 (239)
T ss_dssp             SCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEE-CCCCCHHHHHHHHHHH
T ss_pred             ccccCCCEEEEEECcccCCHHHHHHHHHHHhcCCCCeEEEEEcCCccccChhHhhhhcccc-cccCcHHHhhhHHHHH
Confidence               12  247888753 455555566666 5544445555555555666677777765321 2223344444444443

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.66  E-value=0.011  Score=55.45  Aligned_cols=36  Identities=17%  Similarity=0.374  Sum_probs=27.6

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeeh
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ   53 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~   53 (636)
                      ++..++++.|+||||||+||.+++...   +.....++.
T Consensus        24 ~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~   62 (242)
T d1tf7a2          24 FKDSIILATGATGTGKTLLVSRFVENACANKERAILFAY   62 (242)
T ss_dssp             ESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeec
Confidence            356799999999999999999998764   233445553

>d1xqua_ d.13.1.1 (A:) Putative hydrolase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Putative hydrolase
species: Clostridium thermocellum [TaxId: 1515]

Probab=94.64  E-value=0.0067  Score=51.46  Aligned_cols=38  Identities=11%  Similarity=0.144  Sum_probs=31.6

Q ss_pred             HHhcCccCCCCCeEEEcCcEEEeccCCCCCcccccccCCC
Q 006654          566 RTAMYPERHKDDLLEISDDVVVLNDLYPKVHPSDNLPPGT  605 (636)
Q Consensus       566 ~~~~~p~~~~~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~  605 (636)
                      +++..-+  +..++|-||+++++.|.||.+..|+||+||.
T Consensus         8 ~I~~~e~--p~~ivyede~~~af~d~~P~~~gH~LViPk~   45 (113)
T d1xqua_           8 KIIKREL--PSTIYYEDERVIAIKDINPAAPVHVLIIPKE   45 (113)
T ss_dssp             HHHTTSS--CBCEEEECSSEEEEECSSCSSSEEEEEEESS
T ss_pred             cccCCCC--cccEEEeCCCEEEEECCCCCCCceEEEeecc
Confidence            4444433  3459999999999999999999999999985

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.59  E-value=0.026  Score=52.66  Aligned_cols=67  Identities=22%  Similarity=0.374  Sum_probs=41.0

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcC----------CCeEEeehhhhcCC--CCCcHHHHHHHHHHHH-hC-CCe-EEEe
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSA----------RPWARICQDTINKG--KSGTKVQCLTSASSAL-KK-GKS-VFLD   84 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~----------~~~~~Is~D~ir~~--~~~~~~~~~~~~~~~L-~~-G~~-VIID   84 (636)
                      ..-++|+|+||.|||++++.|+++..          .....+|...+-.+  ..+.++..+..+.+.+ +. |.. .+||
T Consensus        43 k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~LiAg~~~rG~~E~rl~~il~e~~~~~~~iILfID  122 (195)
T d1jbka_          43 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFID  122 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEE
T ss_pred             CCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHHHHhccCCccHHHHHHHHHHHHHHhcCCCcEEEEcc
Confidence            44578999999999999999987531          22344555455433  2345555555555444 43 443 4677


Q ss_pred             CC
Q 006654           85 RC   86 (636)
Q Consensus        85 ~t   86 (636)
                      ..
T Consensus       123 ei  124 (195)
T d1jbka_         123 EL  124 (195)
T ss_dssp             TG
T ss_pred             hH
Confidence            73

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.59  E-value=0.028  Score=48.45  Aligned_cols=58  Identities=5%  Similarity=0.141  Sum_probs=39.6

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHc-----CCCeEEeehhhhcCCCCCcHHHHHHHHHHHHhCCCeEEEeC
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSS-----ARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDR   85 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~-----~~~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~G~~VIID~   85 (636)
                      .-.|+|.|.+||||||+|++|...+     ++++..++.|.++        +....+.+..++|..+|+-.
T Consensus         6 gf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~ni~--------ri~fva~e~~k~G~~~iv~~   68 (122)
T d1g8fa3           6 GFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNNKT--------ELLSLIQDFIGSGSGLIIPD   68 (122)
T ss_dssp             CEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTTCH--------HHHTTHHHHHHTTCEEEESS
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCCCHH--------HHHHHHHHHHhcCCEEEEec
Confidence            3568999999999999999997765     2566666655332        22234455557777766644

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=94.56  E-value=0.012  Score=53.13  Aligned_cols=28  Identities=29%  Similarity=0.475  Sum_probs=25.5

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      .+..+|+|.|.-|||||||+|.+++.++
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence            4567899999999999999999999987

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.49  E-value=0.031  Score=50.04  Aligned_cols=22  Identities=36%  Similarity=0.658  Sum_probs=19.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      .|+++|.||+|||||.++|...
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999854

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=94.40  E-value=0.01  Score=51.39  Aligned_cols=21  Identities=29%  Similarity=0.472  Sum_probs=19.2

Q ss_pred             EEEEccCCCcHHHHHHHHHHH
Q 006654           23 VIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~   43 (636)
                      |+++|.||+|||||..++...
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            789999999999999999754

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.37  E-value=0.07  Score=49.36  Aligned_cols=25  Identities=12%  Similarity=0.195  Sum_probs=19.6

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSAR   46 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~   46 (636)
                      .++.|+|.||   ||+|+.++|.+.++.
T Consensus         8 ~~Rpivi~Gp---~K~ti~~~L~~~~p~   32 (199)
T d1kjwa2           8 YARPIIILGP---TKDRANDDLLSEFPD   32 (199)
T ss_dssp             SCCCEEEEST---THHHHHHHHHHHCTT
T ss_pred             CCCCEEEECc---CHHHHHHHHHHhCcc
Confidence            4556777786   699999999998763

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.36  E-value=0.011  Score=55.48  Aligned_cols=27  Identities=22%  Similarity=0.270  Sum_probs=23.4

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +.-.++++.|+|||||||||-+++...
T Consensus        34 p~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          34 ETQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             cCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            345799999999999999999998764

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=94.20  E-value=0.016  Score=59.15  Aligned_cols=40  Identities=18%  Similarity=0.362  Sum_probs=33.3

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhhcC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK   58 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~ir~   58 (636)
                      ++.-++|+||+|+|||-+|++|++.++.++..++.-.+.+
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~~~~~~~ir~D~s~~~e  106 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTE  106 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC-
T ss_pred             CCcceeeeCCCCccHHHHHHHHHhhcccceeehhhhhccc
Confidence            4667899999999999999999999887888887665543

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.96  E-value=0.0099  Score=55.22  Aligned_cols=25  Identities=20%  Similarity=0.398  Sum_probs=21.8

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      +-.++++.|+|||||||||-+++..
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4568999999999999999998754

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=93.79  E-value=0.044  Score=53.24  Aligned_cols=35  Identities=26%  Similarity=0.310  Sum_probs=26.9

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeeh
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ   53 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~   53 (636)
                      ...++.+.|+|||||||+|-+++...   +...+.||.
T Consensus        53 ~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidt   90 (263)
T d1u94a1          53 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA   90 (263)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            45799999999999999999987543   334555664

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=93.76  E-value=0.016  Score=53.16  Aligned_cols=32  Identities=25%  Similarity=0.407  Sum_probs=25.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i   56 (636)
                      -|+++|++|+||||+|-.|.++ |  +..++.|.+
T Consensus        16 gvl~~G~sG~GKStlal~l~~~-g--~~lv~DD~~   47 (176)
T d1kkma_          16 GVLITGDSGVGKSETALELVQR-G--HRLIADDRV   47 (176)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT-T--CEEEEEEEE
T ss_pred             EEEEEeCCCCCHHHHHHHHHHc-C--CeEEecCeE
Confidence            3789999999999999999875 5  556665544

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=93.74  E-value=0.0095  Score=59.49  Aligned_cols=24  Identities=29%  Similarity=0.354  Sum_probs=21.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcC
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      -++|.|+||+||||+|+.++.-++
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~iLp   53 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAALLP   53 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             eEEEECCCCccHHHHHHHHHHhCC
Confidence            479999999999999999998764

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.73  E-value=0.02  Score=53.44  Aligned_cols=26  Identities=12%  Similarity=0.139  Sum_probs=22.9

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ++-.++++.|+||||||+||-+++..
T Consensus        35 p~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          35 ESMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            35579999999999999999999865

>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: NIT-FHIT fusion protein, C-terminal domain
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.67  E-value=0.014  Score=52.81  Aligned_cols=28  Identities=14%  Similarity=0.180  Sum_probs=27.2

Q ss_pred             eEEEcCcEEEeccCCCCCcccccccCCC
Q 006654          578 LLEISDDVVVLNDLYPKVHPSDNLPPGT  605 (636)
Q Consensus       578 ~~~~~~~~~~~~d~~pk~~~~~l~~~~~  605 (636)
                      |+|-|+.++++.|.+|.+..|+||+||.
T Consensus        31 ii~ede~~~af~Di~P~~pgH~LVIPK~   58 (160)
T d1emsa1          31 IFYSTPHSFVFVNLKPVTDGHVLVSPKR   58 (160)
T ss_dssp             EEEECSSEEEEECSSCSSTTCEEEEESS
T ss_pred             EEEeCCCEEEEECCCCCCCCeEEEEEec
Confidence            9999999999999999999999999985

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=93.47  E-value=0.02  Score=50.53  Aligned_cols=25  Identities=20%  Similarity=0.283  Sum_probs=21.1

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHH
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMR   42 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak   42 (636)
                      .+..-|+|+|.||+|||||..+|..
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4556689999999999999998854

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=93.34  E-value=0.018  Score=52.98  Aligned_cols=32  Identities=25%  Similarity=0.371  Sum_probs=25.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i   56 (636)
                      =|+++|++|+||||+|-.|.++ |  +..++.|..
T Consensus        17 gvli~G~sG~GKS~lal~l~~~-G--~~lvaDD~v   48 (177)
T d1knxa2          17 GVLLTGRSGIGKSECALDLINK-N--HLFVGDDAI   48 (177)
T ss_dssp             EEEEEESSSSSHHHHHHHHHTT-T--CEEEEEEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHc-C--CceecCCeE
Confidence            3789999999999999999865 4  556665544

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.31  E-value=0.023  Score=52.49  Aligned_cols=26  Identities=23%  Similarity=0.276  Sum_probs=23.2

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      ...++++.|+||+||||||-+++...
T Consensus        33 ~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          33 SQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            45799999999999999999998764

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.24  E-value=0.022  Score=49.02  Aligned_cols=21  Identities=19%  Similarity=0.458  Sum_probs=19.3

Q ss_pred             EEEEccCCCcHHHHHHHHHHH
Q 006654           23 VIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~   43 (636)
                      |+|+|.||+|||||..+|...
T Consensus         3 I~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999864

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=93.20  E-value=0.028  Score=56.47  Aligned_cols=29  Identities=31%  Similarity=0.316  Sum_probs=24.6

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      ..+...+|-+.|+||||||||..+|...+
T Consensus        50 ~~~~~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          50 YCGNTLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             GCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             ccCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            44567889999999999999999987653

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=93.18  E-value=0.02  Score=50.66  Aligned_cols=23  Identities=30%  Similarity=0.362  Sum_probs=20.0

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHH
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      .-|+++|.||||||||..+|...
T Consensus        16 ~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          16 HKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            45889999999999999998753

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=93.15  E-value=0.03  Score=48.54  Aligned_cols=24  Identities=21%  Similarity=0.487  Sum_probs=20.7

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ..-|+++|.||+|||||.+++...
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCC
Confidence            345899999999999999999764

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=93.12  E-value=0.026  Score=51.48  Aligned_cols=32  Identities=22%  Similarity=0.419  Sum_probs=25.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCCCeEEeehhhh
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is~D~i   56 (636)
                      =|++.|++|+||||+|-.|.++ |  +..++.|.+
T Consensus        17 gvli~G~sg~GKS~la~~l~~~-g--~~li~DD~~   48 (169)
T d1ko7a2          17 GVLITGDSGIGKSETALELIKR-G--HRLVADDNV   48 (169)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHT-T--CEEEESSEE
T ss_pred             EEEEEeCCCCCHHHHHHHHHHc-C--CeEEeCCeE
Confidence            4789999999999999998877 4  556666554

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.02  E-value=0.024  Score=54.28  Aligned_cols=26  Identities=31%  Similarity=0.496  Sum_probs=22.2

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +..++.|+||+||||||+.+.++.-.
T Consensus        25 ~Gei~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          25 EGEFVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCC
Confidence            45689999999999999999887544

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.01  E-value=0.022  Score=55.59  Aligned_cols=25  Identities=24%  Similarity=0.535  Sum_probs=22.2

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ...+|.+.|++|.||||+|+++...
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            4568999999999999999998765

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.01  E-value=0.02  Score=55.50  Aligned_cols=27  Identities=37%  Similarity=0.442  Sum_probs=22.5

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      +...+.++|++||||||+++.|..-+.
T Consensus        40 ~Ge~iaivG~sGsGKSTLl~ll~gl~~   66 (253)
T d3b60a1          40 AGKTVALVGRSGSGKSTIASLITRFYD   66 (253)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcccC
Confidence            345789999999999999999876543

>d1y23a_ d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Hit
species: Bacillus subtilis [TaxId: 1423]

Probab=93.00  E-value=0.024  Score=49.45  Aligned_cols=31  Identities=13%  Similarity=0.090  Sum_probs=28.9

Q ss_pred             CCeEEEcCcEEEeccCCCCCcccccccCCCC
Q 006654          576 DDLLEISDDVVVLNDLYPKVHPSDNLPPGTL  606 (636)
Q Consensus       576 ~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~~  606 (636)
                      ..++|-||.++++.|.+|.+..|+||+||.-
T Consensus        15 ~~~i~ede~~~af~d~~P~~~GH~LViPk~H   45 (139)
T d1y23a_          15 SAKVYEDEHVLAFLDISQVTKGHTLVIPKTH   45 (139)
T ss_dssp             CCEEEECSSEEEEECTTCSSTTCEEEEESSC
T ss_pred             ccEEEECCCEEEEecCCCCCCcEEEEEEecc
Confidence            4589999999999999999999999999984

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.98  E-value=0.024  Score=56.61  Aligned_cols=40  Identities=18%  Similarity=0.303  Sum_probs=29.9

Q ss_pred             cCccE-EEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhhh
Q 006654           17 KWKQI-LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI   56 (636)
Q Consensus        17 ~~~p~-LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~i   56 (636)
                      +.+|. .++++||+|+|||.+|+.|++.+   ..++..++.-.+
T Consensus        49 ~~kp~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~   92 (315)
T d1qvra3          49 PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY   92 (315)
T ss_dssp             SSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTC
T ss_pred             CCCCceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEecccc
Confidence            34554 67899999999999999999975   345666665333

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=92.90  E-value=0.024  Score=52.06  Aligned_cols=25  Identities=20%  Similarity=0.311  Sum_probs=21.5

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHH
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMR   42 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak   42 (636)
                      +...++++.|+||+|||+||.+++.
T Consensus        24 ~~G~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          24 PIGRSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            4567899999999999999988754

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=92.88  E-value=0.022  Score=54.88  Aligned_cols=27  Identities=33%  Similarity=0.444  Sum_probs=22.8

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      +...+.++|++|||||||++.|...+.
T Consensus        28 ~Ge~vaIvG~sGsGKSTLl~ll~gl~~   54 (241)
T d2pmka1          28 QGEVIGIVGRSGSGKSTLTKLIQRFYI   54 (241)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            346789999999999999999887554

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.83  E-value=0.072  Score=49.29  Aligned_cols=104  Identities=13%  Similarity=0.096  Sum_probs=60.6

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCC------CeEEeehhhhcCCCCCcHHHHHHHHHHHHhC----C--CeEEEeCC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSAR------PWARICQDTINKGKSGTKVQCLTSASSALKK----G--KSVFLDRC   86 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~------~~~~Is~D~ir~~~~~~~~~~~~~~~~~L~~----G--~~VIID~t   86 (636)
                      .+.-+++.|+||+||||+|..+++....      .+..+..    ++..-.-+++ +.+.+.+..    |  +-+|||..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~----~~~~I~Id~I-R~i~~~~~~~~~~~~~KviIId~a   88 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDP----EGENIGIDDI-RTIKDFLNYSPELYTRKYVIVHDC   88 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECC----SSSCBCHHHH-HHHHHHHTSCCSSSSSEEEEETTG
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeC----CcCCCCHHHH-HHHHHHHhhCcccCCCEEEEEeCc
Confidence            4667899999999999999999875421      1222222    1111122332 334444432    2  35778775


Q ss_pred             -CCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 006654           87 -NLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (636)
Q Consensus        87 -n~~~~~R~~l~~l-~~~g~~v~vV~Ld~p~e~l~~R~~~R~~  127 (636)
                       .++......+++. .+......++.+.-..+.+..=+..|..
T Consensus        89 d~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~ll~TI~SRC~  131 (198)
T d2gnoa2          89 ERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVF  131 (198)
T ss_dssp             GGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred             cccchhhhhHHHHHHhCCCCCceeeeccCChhhCHHHHhcceE
Confidence             4666777777777 6655555555555444555555666654

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=92.80  E-value=0.028  Score=54.04  Aligned_cols=26  Identities=27%  Similarity=0.414  Sum_probs=22.4

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +...+.++|++||||||+.+.|..-+
T Consensus        27 ~Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          27 PNSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            45688999999999999999987654

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.77  E-value=0.023  Score=54.31  Aligned_cols=25  Identities=32%  Similarity=0.400  Sum_probs=21.2

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      +..++.++|++||||||+.+.++--
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          30 EGEFVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCcchhhHhccCC
Confidence            4568999999999999999977643

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=92.73  E-value=0.025  Score=54.46  Aligned_cols=26  Identities=23%  Similarity=0.407  Sum_probs=22.1

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +..++.|+|++||||||+.+.++.-.
T Consensus        28 ~Ge~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          28 DGEFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCC
Confidence            34688999999999999999987543

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=92.73  E-value=0.035  Score=50.36  Aligned_cols=20  Identities=25%  Similarity=0.544  Sum_probs=18.5

Q ss_pred             EEEEEccCCCcHHHHHHHHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVM   41 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~La   41 (636)
                      .|.|+|.||+|||||.+.|.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~   44 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLI   44 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHhc
Confidence            48899999999999999996

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=92.73  E-value=0.036  Score=55.52  Aligned_cols=29  Identities=31%  Similarity=0.348  Sum_probs=24.6

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      ......+|-+.|+||+|||||..+|.+.+
T Consensus        47 ~~~~~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          47 QTGRAIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             GCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ccCCceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            44567889999999999999999998653

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.70  E-value=0.1  Score=50.74  Aligned_cols=36  Identities=22%  Similarity=0.201  Sum_probs=27.3

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeeh
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ   53 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~   53 (636)
                      +...++.+.|+|||||||+|-.++...   +..++.||+
T Consensus        58 ~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDt   96 (269)
T d1mo6a1          58 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDA   96 (269)
T ss_dssp             CSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             ccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEEC
Confidence            456799999999999999998877543   333455664

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=92.70  E-value=0.026  Score=50.09  Aligned_cols=21  Identities=38%  Similarity=0.748  Sum_probs=18.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVMR   42 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak   42 (636)
                      -|+++|.||+|||||.++|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            378999999999999999963

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=92.69  E-value=0.025  Score=49.75  Aligned_cols=21  Identities=24%  Similarity=0.425  Sum_probs=18.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVMR   42 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak   42 (636)
                      -|+++|.||+|||||.++|..
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            478999999999999999864

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=92.68  E-value=0.024  Score=54.53  Aligned_cols=25  Identities=32%  Similarity=0.363  Sum_probs=21.5

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      +..++.++|++||||||+.+.++--
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          30 AGQIYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             SSCEEEEEESTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCC
Confidence            4468899999999999999988654

>d1vlra1 d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: mRNA decapping enzyme DcpS C-terminal domain
domain: mRNA decapping enzyme DcpS C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.67  E-value=0.027  Score=52.21  Aligned_cols=53  Identities=13%  Similarity=-0.038  Sum_probs=42.0

Q ss_pred             HHHHhcCccCCCCCeEEEcCc----EEEeccC----CCCCcccccccCCCCccchhcccccc
Q 006654          564 LYRTAMYPERHKDDLLEISDD----VVVLNDL----YPKVHPSDNLPPGTLLCICLSSINKC  617 (636)
Q Consensus       564 ~~~~~~~p~~~~~~~~~~~~~----~~~~~d~----~pk~~~~~l~~~~~~~~~~~~~~~~~  617 (636)
                      .++++.+=.- ++.|||.|+|    +|++.|+    .|.+.-|+|+||+...+.||.|+++.
T Consensus        30 v~nIL~~~~E-~e~i~y~D~d~~~gFvllpD~kWd~~~~~~lhlL~I~~r~~I~SlrDL~~e   90 (192)
T d1vlra1          30 VYNILDKKAE-ADRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPE   90 (192)
T ss_dssp             HHHHHTC-----CCCSEEECCTTTCEEEEECTTCCSSCSTTCEEEEEESSSCCCSGGGCCGG
T ss_pred             HHHHHhCCCc-cceeEEeCCCCCCCEEEecccccCCCcccCeEEEEEEccCCCCChHHCCHh
Confidence            5666655322 4569999977    9999999    69999999999999999999998753

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.62  E-value=0.027  Score=54.41  Aligned_cols=27  Identities=30%  Similarity=0.345  Sum_probs=22.8

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      +..++.++|++||||||+.+.+...+.
T Consensus        39 ~Ge~vaivG~sGsGKSTLl~li~gl~~   65 (251)
T d1jj7a_          39 PGEVTALVGPNGSGKSTVAALLQNLYQ   65 (251)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcccC
Confidence            456889999999999999999876543

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=92.60  E-value=0.29  Score=48.59  Aligned_cols=104  Identities=19%  Similarity=0.176  Sum_probs=57.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHcCC--CeEEe-ehhhhcC--CC------CCcHHHHHHHHHHHHhCCCeEEEeCCCCCH
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSSAR--PWARI-CQDTINK--GK------SGTKVQCLTSASSALKKGKSVFLDRCNLER   90 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~~~--~~~~I-s~D~ir~--~~------~~~~~~~~~~~~~~L~~G~~VIID~tn~~~   90 (636)
                      -|+++|++||||||+.+.|+...+.  +.+.| +..++.-  ..      ..........+..+|+..-..|+=+--+..
T Consensus       168 nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd~~El~l~~~~~~~~~~~~~~~~~~~ll~~~lR~~pd~iivgEiR~~  247 (323)
T d1g6oa_         168 NVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRSS  247 (323)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEESCCCST
T ss_pred             CEEEEeeccccchHHHHHHhhhcccccceeeccchhhhhcccccccceeccccchhHHHHHHHHhccCCCcccCCccCch
Confidence            3788999999999999999987763  22333 2222210  00      000111235566677776666655556666


Q ss_pred             HHHHHHHHh-CCCCCeEEEEEEe-CCHHHHHHHHHhccc
Q 006654           91 EQRTDFVKL-GGPEVDVHAVVLD-LPAKLCISRSVKRIE  127 (636)
Q Consensus        91 ~~R~~l~~l-~~~g~~v~vV~Ld-~p~e~l~~R~~~R~~  127 (636)
                      +....+..+ ..+...+.  -+. -+.....+|+..-..
T Consensus       248 ea~~~l~a~~tGh~g~~t--T~Ha~s~~~a~~Rl~~l~~  284 (323)
T d1g6oa_         248 EAYDFYNVLCSGHKGTLT--TLHAGSSEEAFIRLANMSS  284 (323)
T ss_dssp             HHHHHHHHHHTTCSCEEE--EECCSSHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhcCCcEEE--EECCCCHHHHHHHHHHhcc
Confidence            655544334 44322222  333 345667888875443

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=92.58  E-value=0.12  Score=50.08  Aligned_cols=36  Identities=17%  Similarity=0.182  Sum_probs=27.8

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeeh
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ   53 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~   53 (636)
                      +...++.+.|+|||||||+|-.++...   +..++.||+
T Consensus        55 p~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDt   93 (268)
T d1xp8a1          55 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDA   93 (268)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             cCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEEC
Confidence            356799999999999999999887543   334566775

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=92.58  E-value=0.036  Score=49.18  Aligned_cols=26  Identities=15%  Similarity=0.419  Sum_probs=21.6

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHH
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMR   42 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak   42 (636)
                      +.+..-|+++|.||+|||||..++..
T Consensus        13 ~~~~~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          13 PDQEVRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHhc
Confidence            34456789999999999999998854

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.52  E-value=0.035  Score=52.34  Aligned_cols=31  Identities=26%  Similarity=0.477  Sum_probs=24.3

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHc-CCCeEEe
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSS-ARPWARI   51 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~-~~~~~~I   51 (636)
                      .++++.|+.|||||||.+++.+.. +..+..|
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~~~~~riaVI   35 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVI   35 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEE
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence            368999999999999999998754 3345444

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.51  E-value=0.03  Score=53.87  Aligned_cols=25  Identities=28%  Similarity=0.481  Sum_probs=21.3

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      .++.|+||+||||||+.+.++.-..
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl~~   49 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEEECCCCChHHHHHHHHHcCCC
Confidence            4677999999999999999986543

>d1fita_ d.13.1.1 (A:) FHIT (fragile histidine triad protein) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: FHIT (fragile histidine triad protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.41  E-value=0.023  Score=50.24  Aligned_cols=30  Identities=13%  Similarity=-0.053  Sum_probs=28.4

Q ss_pred             CeEEEcCcEEEeccCCCCCcccccccCCCC
Q 006654          577 DLLEISDDVVVLNDLYPKVHPSDNLPPGTL  606 (636)
Q Consensus       577 ~~~~~~~~~~~~~d~~pk~~~~~l~~~~~~  606 (636)
                      .++|-||.++++-|.+|.+..|+||+||.-
T Consensus        13 ~ii~e~e~~~afld~~P~~pgH~LViPk~H   42 (146)
T d1fita_          13 VVFLKTELSFALVNRKPVVPGHVLVCPLRP   42 (146)
T ss_dssp             GEEEECSSEEEEECSSCSSTTCEEEEESSC
T ss_pred             eEEEECCCEEEEECCCCCCCcEEEEEecce
Confidence            399999999999999999999999999975

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=92.40  E-value=0.025  Score=54.00  Aligned_cols=26  Identities=23%  Similarity=0.439  Sum_probs=22.6

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +..++.|+||+||||||+.+.++--.
T Consensus        25 ~Ge~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          25 SGEYFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            45689999999999999999998654

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.34  E-value=0.033  Score=53.47  Aligned_cols=27  Identities=19%  Similarity=0.384  Sum_probs=22.4

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      +-.++.|+|++||||||+.+.+..-..
T Consensus        31 ~Ge~~~liGpsGaGKSTLl~~i~Gl~~   57 (239)
T d1v43a3          31 DGEFLVLLGPSGCGKTTTLRMIAGLEE   57 (239)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence            346789999999999999998876543

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.30  E-value=0.031  Score=49.81  Aligned_cols=20  Identities=30%  Similarity=0.469  Sum_probs=18.5

Q ss_pred             EEEEccCCCcHHHHHHHHHH
Q 006654           23 VIMVGAPGSGKSTFCEHVMR   42 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak   42 (636)
                      |+|+|.|++|||||..+|..
T Consensus         3 I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           3 IIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999999974

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=92.25  E-value=0.19  Score=44.83  Aligned_cols=21  Identities=19%  Similarity=0.267  Sum_probs=19.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVMR   42 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak   42 (636)
                      -|.++|.|.+|||||..+|.+
T Consensus         7 nIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            489999999999999999974

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.11  E-value=0.031  Score=54.27  Aligned_cols=26  Identities=31%  Similarity=0.454  Sum_probs=22.1

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +-.++.|+|++||||||+++.++--.
T Consensus        27 ~GEi~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          27 AGDVISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            45688999999999999999987543

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.05  E-value=0.092  Score=53.75  Aligned_cols=67  Identities=18%  Similarity=0.356  Sum_probs=35.7

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHc--C--------CCeEEeehhhhcCC--CCCcHHHHHHHHHHHHhC--CCe-EEEeC
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSS--A--------RPWARICQDTINKG--KSGTKVQCLTSASSALKK--GKS-VFLDR   85 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~--~--------~~~~~Is~D~ir~~--~~~~~~~~~~~~~~~L~~--G~~-VIID~   85 (636)
                      .-++|+|+||.|||++++.|+.+.  +        .....++...+-.+  ..|.++..+..+...+..  |.. ++||.
T Consensus        44 ~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~~g~~e~r~~~i~~~~~~~~~~~ilfide  123 (387)
T d1qvra2          44 NNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDE  123 (387)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECC
T ss_pred             CCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhhhhcccCcchhHHHHHHHHHHHhccCCCceEEEecc
Confidence            346888999999999998888652  1        12333444444332  345666655555555533  333 46677


Q ss_pred             CC
Q 006654           86 CN   87 (636)
Q Consensus        86 tn   87 (636)
                      .+
T Consensus       124 ~h  125 (387)
T d1qvra2         124 LH  125 (387)
T ss_dssp             C-
T ss_pred             HH
Confidence            43

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.04  E-value=0.024  Score=52.83  Aligned_cols=27  Identities=26%  Similarity=0.304  Sum_probs=22.3

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      +..++.|+|+.||||||+.+.++..+.
T Consensus        26 ~Gei~~l~G~NGsGKSTLl~~i~gl~~   52 (200)
T d1sgwa_          26 KGNVVNFHGPNGIGKTTLLKTISTYLK   52 (200)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcccc
Confidence            345789999999999999999976543

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.03  E-value=0.037  Score=54.34  Aligned_cols=27  Identities=22%  Similarity=0.431  Sum_probs=22.7

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      +..++.++|++||||||+.+.+...+.
T Consensus        61 ~Ge~vaivG~nGsGKSTLl~~i~Gl~~   87 (281)
T d1r0wa_          61 KGEMLAITGSTGSGKTSLLMLILGELE   87 (281)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCCc
Confidence            346789999999999999999986553

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.95  E-value=0.04  Score=48.58  Aligned_cols=22  Identities=23%  Similarity=0.443  Sum_probs=19.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      -|+|+|.||+|||||..++...
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~~   25 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCKG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999998853

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.86  E-value=0.04  Score=50.06  Aligned_cols=22  Identities=23%  Similarity=0.451  Sum_probs=19.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      .|+|+|.|++|||||..+|...
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999999999999865

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.67  E-value=0.029  Score=54.05  Aligned_cols=26  Identities=23%  Similarity=0.356  Sum_probs=22.2

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +-.++.|+|++||||||+.+.++--.
T Consensus        30 ~Ge~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          30 NGERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            34689999999999999999988643

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.59  E-value=0.042  Score=49.38  Aligned_cols=20  Identities=30%  Similarity=0.554  Sum_probs=18.5

Q ss_pred             EEEEccCCCcHHHHHHHHHH
Q 006654           23 VIMVGAPGSGKSTFCEHVMR   42 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak   42 (636)
                      |+|+|.||+|||||.+++..
T Consensus         8 i~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            78999999999999999874

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=91.57  E-value=0.044  Score=47.74  Aligned_cols=22  Identities=27%  Similarity=0.548  Sum_probs=19.3

Q ss_pred             EEEEEccCCCcHHHHHHHHHHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      -|+++|.|++|||||..+|...
T Consensus         3 kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999999743

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.54  E-value=0.047  Score=48.43  Aligned_cols=21  Identities=19%  Similarity=0.493  Sum_probs=19.3

Q ss_pred             EEEEccCCCcHHHHHHHHHHH
Q 006654           23 VIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~   43 (636)
                      |+++|.+|+|||||..++...
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            789999999999999999864

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.41  E-value=0.049  Score=48.50  Aligned_cols=21  Identities=29%  Similarity=0.480  Sum_probs=18.9

Q ss_pred             EEEEccCCCcHHHHHHHHHHH
Q 006654           23 VIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~   43 (636)
                      |+++|.||+|||||..++...
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            789999999999999998753

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.39  E-value=0.048  Score=49.90  Aligned_cols=22  Identities=27%  Similarity=0.445  Sum_probs=19.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      -|+|+|+||+|||||..+|...
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3899999999999999999864

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.39  E-value=0.049  Score=48.39  Aligned_cols=21  Identities=24%  Similarity=0.619  Sum_probs=19.2

Q ss_pred             EEEEccCCCcHHHHHHHHHHH
Q 006654           23 VIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~   43 (636)
                      |+|+|.||+|||||..++...
T Consensus         8 I~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            899999999999999998753

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=91.24  E-value=0.052  Score=47.75  Aligned_cols=22  Identities=32%  Similarity=0.460  Sum_probs=19.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      -|+|+|++|+|||||..++...
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3788999999999999999754

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=91.20  E-value=0.052  Score=51.94  Aligned_cols=35  Identities=17%  Similarity=0.223  Sum_probs=26.7

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHH----cCCCeEEeeh
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRS----SARPWARICQ   53 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~----~~~~~~~Is~   53 (636)
                      +..++++.|+||+|||||+-+++..    .+.++..++.
T Consensus        34 ~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~   72 (277)
T d1cr2a_          34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML   72 (277)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeee
Confidence            4579999999999999999998743    2445555653

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.14  E-value=0.053  Score=48.04  Aligned_cols=21  Identities=19%  Similarity=0.627  Sum_probs=19.2

Q ss_pred             EEEEccCCCcHHHHHHHHHHH
Q 006654           23 VIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~   43 (636)
                      |+|+|.+|+|||||.+++...
T Consensus         8 i~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999999863

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.09  E-value=0.055  Score=47.94  Aligned_cols=20  Identities=30%  Similarity=0.662  Sum_probs=18.6

Q ss_pred             EEEEccCCCcHHHHHHHHHH
Q 006654           23 VIMVGAPGSGKSTFCEHVMR   42 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak   42 (636)
                      |+++|.||+|||||..++..
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999999875

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.05  E-value=0.056  Score=47.60  Aligned_cols=21  Identities=24%  Similarity=0.594  Sum_probs=19.1

Q ss_pred             EEEEccCCCcHHHHHHHHHHH
Q 006654           23 VIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~   43 (636)
                      |+++|.||+|||||..++...
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998764

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.01  E-value=0.056  Score=48.16  Aligned_cols=21  Identities=33%  Similarity=0.692  Sum_probs=19.0

Q ss_pred             EEEEccCCCcHHHHHHHHHHH
Q 006654           23 VIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~   43 (636)
                      |+++|.||+|||||..++...
T Consensus         7 i~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998753

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=90.91  E-value=0.044  Score=52.52  Aligned_cols=27  Identities=26%  Similarity=0.425  Sum_probs=22.7

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      +-.++.|+||.||||||+.+.+.-...
T Consensus        31 ~Gei~~liGpnGaGKSTl~~~i~Gl~~   57 (240)
T d1ji0a_          31 RGQIVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            456899999999999999999876543

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=90.85  E-value=0.098  Score=50.04  Aligned_cols=38  Identities=13%  Similarity=0.147  Sum_probs=30.2

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehh
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD   54 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D   54 (636)
                      +.+|++|++.|-=|.||||+|-.|+..+   |.+...||.|
T Consensus         5 ~~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~D   45 (296)
T d1ihua1           5 QNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD   45 (296)
T ss_dssp             SSCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            4589999999999999999888877543   4556667776

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.62  E-value=0.053  Score=52.38  Aligned_cols=27  Identities=30%  Similarity=0.420  Sum_probs=22.6

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      +..++.|+||.||||||+.+.+.-.+.
T Consensus        29 ~Gei~~liG~nGaGKSTLl~~i~Gl~~   55 (254)
T d1g6ha_          29 KGDVTLIIGPNGSGKSTLINVITGFLK   55 (254)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHCCCc
Confidence            456889999999999999999876543

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=90.58  E-value=0.038  Score=53.54  Aligned_cols=27  Identities=37%  Similarity=0.420  Sum_probs=22.1

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      +...+.++|++||||||+.+.|...+.
T Consensus        43 ~Ge~vaivG~sGsGKSTLl~ll~gl~~   69 (255)
T d2hyda1          43 KGETVAFVGMSGGGKSTLINLIPRFYD   69 (255)
T ss_dssp             TTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhcCC
Confidence            345789999999999999998775543

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.57  E-value=0.066  Score=47.17  Aligned_cols=21  Identities=29%  Similarity=0.502  Sum_probs=19.1

Q ss_pred             EEEEccCCCcHHHHHHHHHHH
Q 006654           23 VIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~   43 (636)
                      |+|+|.||+|||||.+++...
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999999854

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.51  E-value=0.067  Score=46.83  Aligned_cols=21  Identities=19%  Similarity=0.431  Sum_probs=19.2

Q ss_pred             EEEEccCCCcHHHHHHHHHHH
Q 006654           23 VIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~   43 (636)
                      |+|+|.+|+|||||..++...
T Consensus         5 v~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999999853

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.50  E-value=0.067  Score=47.51  Aligned_cols=22  Identities=32%  Similarity=0.569  Sum_probs=19.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      -|+++|.||+|||||..++...
T Consensus         8 KI~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3899999999999999998763

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=90.39  E-value=0.062  Score=47.67  Aligned_cols=24  Identities=25%  Similarity=0.458  Sum_probs=20.2

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMR   42 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak   42 (636)
                      +..-|+++|.||+|||||.+++..
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTTC
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhc
Confidence            345588999999999999999864

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.37  E-value=0.07  Score=47.18  Aligned_cols=22  Identities=18%  Similarity=0.486  Sum_probs=19.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      -|+++|.+|+|||||..++...
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999999853

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.19  E-value=0.074  Score=46.86  Aligned_cols=21  Identities=19%  Similarity=0.398  Sum_probs=19.1

Q ss_pred             EEEEccCCCcHHHHHHHHHHH
Q 006654           23 VIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~   43 (636)
                      |+|+|.+|+|||||..++...
T Consensus         6 ivlvG~~~vGKTsLi~r~~~~   26 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCEN   26 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998853

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.14  E-value=0.074  Score=47.66  Aligned_cols=21  Identities=29%  Similarity=0.649  Sum_probs=19.0

Q ss_pred             EEEEccCCCcHHHHHHHHHHH
Q 006654           23 VIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~   43 (636)
                      |+++|.||+|||||..++...
T Consensus         5 v~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999999753

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.00  E-value=0.075  Score=46.92  Aligned_cols=23  Identities=30%  Similarity=0.528  Sum_probs=20.3

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMR   42 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak   42 (636)
                      +-.|+|+|.|++|||||..+|..
T Consensus         5 ~~~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           5 CGFIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHT
T ss_pred             ccEEEEECCCCCCHHHHHHHHhC
Confidence            34589999999999999999975

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.00  E-value=0.078  Score=46.84  Aligned_cols=21  Identities=29%  Similarity=0.528  Sum_probs=19.2

Q ss_pred             EEEEccCCCcHHHHHHHHHHH
Q 006654           23 VIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~   43 (636)
                      |+++|.+|+|||||.+++...
T Consensus         9 i~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            899999999999999998763

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.87  E-value=0.081  Score=46.50  Aligned_cols=22  Identities=27%  Similarity=0.528  Sum_probs=19.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      -|+++|.+|+|||||..++...
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999999864

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=89.86  E-value=0.069  Score=51.04  Aligned_cols=27  Identities=19%  Similarity=0.261  Sum_probs=22.9

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      +..++-|+||.||||||+.+.++....
T Consensus        27 ~Gei~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          27 EGEIFGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            456889999999999999999886544

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=89.84  E-value=0.075  Score=47.44  Aligned_cols=23  Identities=26%  Similarity=0.582  Sum_probs=19.8

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVM   41 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~La   41 (636)
                      +..-|+++|.||+|||||.+++.
T Consensus        16 k~~KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          16 KELRILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHh
Confidence            44568899999999999999875

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=89.81  E-value=0.078  Score=50.40  Aligned_cols=24  Identities=21%  Similarity=0.308  Sum_probs=20.9

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ..+.+|+|+||+|||||+-.++..
T Consensus        29 g~~~~i~G~~G~GKS~l~l~la~~   52 (274)
T d1nlfa_          29 GTVGALVSPGGAGKSMLALQLAAQ   52 (274)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHH
Confidence            357889999999999999998864

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.71  E-value=0.085  Score=46.15  Aligned_cols=20  Identities=20%  Similarity=0.516  Sum_probs=18.6

Q ss_pred             EEEEccCCCcHHHHHHHHHH
Q 006654           23 VIMVGAPGSGKSTFCEHVMR   42 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak   42 (636)
                      |+++|.+|+|||||.+++..
T Consensus         3 v~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999975

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.70  E-value=0.1  Score=45.84  Aligned_cols=24  Identities=17%  Similarity=0.296  Sum_probs=20.4

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ..-|+|+|.+|+|||||..++...
T Consensus         4 ~~Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           4 SRKIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhC
Confidence            345889999999999999998753

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.67  E-value=0.11  Score=45.82  Aligned_cols=23  Identities=30%  Similarity=0.537  Sum_probs=20.1

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHH
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      .-|+|+|.||+|||||.+++...
T Consensus         6 ~Ki~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           6 YRLVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            45899999999999999998753

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.66  E-value=0.084  Score=47.92  Aligned_cols=21  Identities=24%  Similarity=0.501  Sum_probs=19.0

Q ss_pred             EEEEccCCCcHHHHHHHHHHH
Q 006654           23 VIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~   43 (636)
                      |+++|.+|+|||||..++...
T Consensus         9 ivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhhC
Confidence            789999999999999999853

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=89.61  E-value=0.061  Score=51.15  Aligned_cols=24  Identities=29%  Similarity=0.469  Sum_probs=20.9

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHH
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMR   42 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak   42 (636)
                      +..++.|+|+.||||||+.+.++-
T Consensus        24 ~Gei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          24 AGEILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             TTCEEECBCCTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Confidence            456899999999999999998864

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.58  E-value=0.083  Score=46.55  Aligned_cols=20  Identities=35%  Similarity=0.584  Sum_probs=18.4

Q ss_pred             EEEEccCCCcHHHHHHHHHH
Q 006654           23 VIMVGAPGSGKSTFCEHVMR   42 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak   42 (636)
                      |+++|.+|+|||||..++..
T Consensus         5 i~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999999875

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.52  E-value=0.089  Score=46.25  Aligned_cols=22  Identities=32%  Similarity=0.608  Sum_probs=19.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      -|+|+|.+|+|||||..++...
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3889999999999999999864

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=89.48  E-value=0.088  Score=54.01  Aligned_cols=107  Identities=17%  Similarity=0.113  Sum_probs=60.0

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHHcCCCeEE-eeh-hhhc---CCC-----C-CcHHHHHHHHHHHHhCCCeEEEeCC
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWAR-ICQ-DTIN---KGK-----S-GTKVQCLTSASSALKKGKSVFLDRC   86 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~-Is~-D~ir---~~~-----~-~~~~~~~~~~~~~L~~G~~VIID~t   86 (636)
                      .+.-+|++.||.||||||....+......+..+ +.. |-+-   .+.     . .........+..+|+..-.||+=+-
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~~~~~~q~~v~~~~~~~~~~~l~~~lR~dPDvi~igE  235 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGE  235 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESC
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccCcccccCCCCeeeecCCcCCCHHHHHHHHHhhcCCEEEecC
Confidence            455789999999999999999998876532111 110 1110   000     0 0011134566777888878888776


Q ss_pred             CCCHHHHHHHHHhCCCCCeEEEEEEeC-CHHHHHHHHHhc
Q 006654           87 NLEREQRTDFVKLGGPEVDVHAVVLDL-PAKLCISRSVKR  125 (636)
Q Consensus        87 n~~~~~R~~l~~l~~~g~~v~vV~Ld~-p~e~l~~R~~~R  125 (636)
                      -+..+.....++....|..+ +--+.+ +.-....|+..-
T Consensus       236 iRd~~ta~~a~~aa~tGhlV-~tTlHa~~a~~~~~Rl~~~  274 (401)
T d1p9ra_         236 IRDLETAQIAVQASLTGHLV-MSTLHTNTAVGAVTRLRDM  274 (401)
T ss_dssp             CCSHHHHHHHHHHHHTTCEE-EEEECCSSSHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHhcCCeE-EEEeccCchHhhhhhhhhc
Confidence            77777776666662233221 112333 223455666543

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.46  E-value=0.091  Score=46.23  Aligned_cols=22  Identities=27%  Similarity=0.445  Sum_probs=19.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      -|+++|.+|+|||||.+++...
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999999853

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.40  E-value=0.093  Score=46.38  Aligned_cols=21  Identities=24%  Similarity=0.502  Sum_probs=19.2

Q ss_pred             EEEEccCCCcHHHHHHHHHHH
Q 006654           23 VIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~   43 (636)
                      |+|+|.+|+|||+|.+++...
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999999864

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=89.37  E-value=0.065  Score=47.23  Aligned_cols=22  Identities=27%  Similarity=0.363  Sum_probs=19.3

Q ss_pred             cEEEEEEccCCCcHHHHHHHHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVM   41 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~La   41 (636)
                      ..-|+|+|.|++|||||.++|.
T Consensus        16 ~~~I~lvG~~NvGKSSL~n~L~   37 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSALNTLT   37 (188)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHh
Confidence            4558999999999999999885

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.25  E-value=0.12  Score=46.32  Aligned_cols=26  Identities=19%  Similarity=0.231  Sum_probs=22.0

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ++..-|+|+|.+|+|||||.+++...
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhC
Confidence            34456899999999999999998864

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.23  E-value=0.092  Score=46.41  Aligned_cols=20  Identities=40%  Similarity=0.698  Sum_probs=18.2

Q ss_pred             EEEEccCCCcHHHHHHHHHH
Q 006654           23 VIMVGAPGSGKSTFCEHVMR   42 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak   42 (636)
                      |+++|.+|+|||||.+++..
T Consensus         4 i~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCcCHHHHHHHHhC
Confidence            78999999999999999864

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=89.21  E-value=0.098  Score=48.80  Aligned_cols=30  Identities=20%  Similarity=0.238  Sum_probs=26.3

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ..++...+++.|||++|||+||..|.+-++
T Consensus        49 ~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          49 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             TCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             CCCCceEEEEECCCCccHHHHHHHHHHHhC
Confidence            346778899999999999999999998875

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=89.13  E-value=0.07  Score=47.73  Aligned_cols=20  Identities=45%  Similarity=0.524  Sum_probs=18.0

Q ss_pred             EEEEccCCCcHHHHHHHHHH
Q 006654           23 VIMVGAPGSGKSTFCEHVMR   42 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak   42 (636)
                      |.|+|+|++|||||..+|..
T Consensus         4 VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEE
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999998853

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.12  E-value=0.094  Score=46.69  Aligned_cols=21  Identities=24%  Similarity=0.525  Sum_probs=19.3

Q ss_pred             EEEEEccCCCcHHHHHHHHHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVMR   42 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak   42 (636)
                      -|+|+|.+|+|||||.+++..
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999999875

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.09  E-value=0.037  Score=48.22  Aligned_cols=21  Identities=33%  Similarity=0.721  Sum_probs=19.2

Q ss_pred             EEEEccCCCcHHHHHHHHHHH
Q 006654           23 VIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~   43 (636)
                      |+|+|.|++|||||..+|...
T Consensus         3 I~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999754

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.92  E-value=0.14  Score=45.39  Aligned_cols=23  Identities=30%  Similarity=0.517  Sum_probs=20.2

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHH
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      .-|+|+|.+|+|||||.+++...
T Consensus         7 ~Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           7 HKLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            45889999999999999998853

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=88.91  E-value=0.11  Score=49.67  Aligned_cols=26  Identities=19%  Similarity=0.463  Sum_probs=22.2

Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHH
Q 006654           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        18 ~~p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ..+.-|+|+|.||+||||+...|..+
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCC
Confidence            35667899999999999999999754

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=88.91  E-value=0.13  Score=49.97  Aligned_cols=30  Identities=20%  Similarity=0.315  Sum_probs=26.8

Q ss_pred             ccCccEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      ..++...+++.|+|++|||||+..+.+-+|
T Consensus       100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~lg  129 (267)
T d1u0ja_         100 KFGKRNTIWLFGPATTGKTNIAEAIAHTVP  129 (267)
T ss_dssp             CSTTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CCCccEEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            446778899999999999999999999887

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=88.81  E-value=0.11  Score=45.97  Aligned_cols=21  Identities=48%  Similarity=0.632  Sum_probs=19.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVMR   42 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak   42 (636)
                      -|+|+|.+|+|||||.+++..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999875

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=88.72  E-value=0.076  Score=47.33  Aligned_cols=20  Identities=40%  Similarity=0.625  Sum_probs=18.0

Q ss_pred             EEEEccCCCcHHHHHHHHHH
Q 006654           23 VIMVGAPGSGKSTFCEHVMR   42 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak   42 (636)
                      |.|+|.|++|||||..+|..
T Consensus         4 VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999999854

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.54  E-value=0.11  Score=46.03  Aligned_cols=21  Identities=19%  Similarity=0.355  Sum_probs=18.9

Q ss_pred             EEEEccCCCcHHHHHHHHHHH
Q 006654           23 VIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~   43 (636)
                      |+++|.+|+|||||..++...
T Consensus         5 ivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            688999999999999998864

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.38  E-value=0.12  Score=45.39  Aligned_cols=21  Identities=24%  Similarity=0.588  Sum_probs=19.2

Q ss_pred             EEEEccCCCcHHHHHHHHHHH
Q 006654           23 VIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~   43 (636)
                      |+++|.+|+|||+|.+++...
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            789999999999999999754

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.27  E-value=0.12  Score=45.39  Aligned_cols=22  Identities=18%  Similarity=0.433  Sum_probs=19.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      -|+++|.+|+|||||..++...
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999998754

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.07  E-value=0.074  Score=47.22  Aligned_cols=20  Identities=20%  Similarity=0.468  Sum_probs=8.4

Q ss_pred             EEEEccCCCcHHHHHHHHHH
Q 006654           23 VIMVGAPGSGKSTFCEHVMR   42 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak   42 (636)
                      |+|+|.||+|||||.+++..
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998874

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.05  E-value=0.11  Score=46.47  Aligned_cols=20  Identities=40%  Similarity=0.659  Sum_probs=18.1

Q ss_pred             EEEEEccCCCcHHHHHHHHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVM   41 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~La   41 (636)
                      -|+|+|.+|+|||||..++.
T Consensus         4 KivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            37899999999999999983

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.92  E-value=0.13  Score=45.71  Aligned_cols=20  Identities=35%  Similarity=0.642  Sum_probs=18.4

Q ss_pred             EEEEccCCCcHHHHHHHHHH
Q 006654           23 VIMVGAPGSGKSTFCEHVMR   42 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak   42 (636)
                      |+|+|.+|+|||||..++..
T Consensus         6 v~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999874

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=87.76  E-value=0.18  Score=44.81  Aligned_cols=24  Identities=38%  Similarity=0.630  Sum_probs=20.5

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      ..-|.++|.+|+|||||..+|...
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            356889999999999999998743

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=87.24  E-value=0.2  Score=42.45  Aligned_cols=34  Identities=18%  Similarity=0.096  Sum_probs=25.3

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHcCCCeEEee
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARIC   52 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~~~~~~~Is   52 (636)
                      .-...+|.+|.|||||+++-.+....+.....+.
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~~~~~~~vli~~   40 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLN   40 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHHHTTTCCEEEEE
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHcCCcEEEEc
Confidence            3456789999999999999887777664443333

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.23  E-value=0.15  Score=44.94  Aligned_cols=21  Identities=29%  Similarity=0.539  Sum_probs=18.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVMR   42 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak   42 (636)
                      -|+|+|.+|+|||||..++..
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378899999999999999885

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.09  E-value=0.1  Score=46.31  Aligned_cols=20  Identities=35%  Similarity=0.785  Sum_probs=17.5

Q ss_pred             EEEEccCCCcHHHHHHHHHH
Q 006654           23 VIMVGAPGSGKSTFCEHVMR   42 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak   42 (636)
                      |+++|.+|+|||||..++..
T Consensus         6 i~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC-
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998764

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.90  E-value=0.16  Score=45.70  Aligned_cols=22  Identities=18%  Similarity=0.268  Sum_probs=19.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      -|+|+|.+|+|||+|..++...
T Consensus         5 KvvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999998854

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.89  E-value=0.16  Score=45.50  Aligned_cols=22  Identities=18%  Similarity=0.279  Sum_probs=19.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      -|+++|.+|+|||||..++...
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            4899999999999999998753

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.80  E-value=0.17  Score=45.30  Aligned_cols=21  Identities=19%  Similarity=0.483  Sum_probs=19.1

Q ss_pred             EEEEccCCCcHHHHHHHHHHH
Q 006654           23 VIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~   43 (636)
                      |+|+|.+|+|||+|..++...
T Consensus         5 ivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998864

>d2oika1 d.13.1.1 (A:6-144) Histidine triad protein Mfla2506 {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Histidine triad protein Mfla2506
species: Methylobacillus flagellatus [TaxId: 405]

Probab=86.31  E-value=0.16  Score=44.05  Aligned_cols=31  Identities=6%  Similarity=-0.181  Sum_probs=28.7

Q ss_pred             CCeEEEcCcEEEeccCCCCCcccccccCCCC
Q 006654          576 DDLLEISDDVVVLNDLYPKVHPSDNLPPGTL  606 (636)
Q Consensus       576 ~~~~~~~~~~~~~~d~~pk~~~~~l~~~~~~  606 (636)
                      ..+||-|+.++++-|.||...-|+||+||.-
T Consensus        14 ~~ii~e~~~~~v~l~~~p~~pGh~Lvipk~H   44 (139)
T d2oika1          14 GEILWQDALCRVVHVENQDYPGFCRVILNRH   44 (139)
T ss_dssp             SEEEEECSSEEEEECCCTTCTTCEEEEESSC
T ss_pred             CeEEEECCCEEEEEcCCCCCCcEEEEecccc
Confidence            3599999999999999999999999999964

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.21  E-value=0.17  Score=46.98  Aligned_cols=23  Identities=30%  Similarity=0.391  Sum_probs=19.8

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHH
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      .-|+|+|.+|+||||+.+++...
T Consensus         7 ~KilllG~~~vGKTsll~~~~~~   29 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRIL   29 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            34799999999999999998654

>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: Hexose-1-phosphate uridylyltransferase
domain: Galactose-1-phosphate uridylyltransferase
species: Escherichia coli [TaxId: 562]

Probab=85.97  E-value=0.17  Score=45.25  Aligned_cols=30  Identities=7%  Similarity=-0.009  Sum_probs=28.4

Q ss_pred             CeEEEcCcEEEeccCCCCCcccccccCCCC
Q 006654          577 DLLEISDDVVVLNDLYPKVHPSDNLPPGTL  606 (636)
Q Consensus       577 ~~~~~~~~~~~~~d~~pk~~~~~l~~~~~~  606 (636)
                      -++|-+|.++++-|.+|.+..|+||+||.-
T Consensus        34 RiV~e~e~~~af~~~~p~~p~h~lIiPk~h   63 (171)
T d1guqa2          34 RTVVETEHWLAVVPYWAAWPFETLLLPKAH   63 (171)
T ss_dssp             TEEEECSSEEEECCTTCCSTTCEEEEESSC
T ss_pred             eEEEECCeEEEEEcCCCCCcceEEEecchh
Confidence            399999999999999999999999999975

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=85.62  E-value=0.17  Score=48.37  Aligned_cols=16  Identities=25%  Similarity=0.549  Sum_probs=12.5

Q ss_pred             EEEEccCCCcHHHHHH
Q 006654           23 VIMVGAPGSGKSTFCE   38 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr   38 (636)
                      +++.|+|||||||.+-
T Consensus        17 ~lI~g~aGTGKTt~l~   32 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVIT   32 (306)
T ss_dssp             EEECCCTTSCHHHHHH
T ss_pred             EEEEeeCCccHHHHHH
Confidence            4566999999998643

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=85.18  E-value=0.23  Score=50.13  Aligned_cols=23  Identities=26%  Similarity=0.645  Sum_probs=18.7

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHH
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMR   42 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak   42 (636)
                      ..+.++.|+||+||||....+.+
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~l~  185 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKLLA  185 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHHHH
Confidence            35789999999999998866543

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=84.80  E-value=0.23  Score=47.99  Aligned_cols=16  Identities=25%  Similarity=0.592  Sum_probs=12.8

Q ss_pred             EEEEccCCCcHHHHHH
Q 006654           23 VIMVGAPGSGKSTFCE   38 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr   38 (636)
                      +++.|+|||||||.+-
T Consensus        27 ~lV~g~aGSGKTt~l~   42 (318)
T d1pjra1          27 LLIMAGAGSGKTRVLT   42 (318)
T ss_dssp             EEEEECTTSCHHHHHH
T ss_pred             EEEEecCCccHHHHHH
Confidence            5567999999998653

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.02  E-value=0.27  Score=43.57  Aligned_cols=23  Identities=30%  Similarity=0.471  Sum_probs=20.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHc
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      =|+|+|.+|+||||+..++....
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~~   26 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRIIH   26 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999997653

>d1z84a2 d.13.1.2 (A:196-351) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: Hexose-1-phosphate uridylyltransferase
domain: Galactose-1-phosphate uridylyltransferase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.01  E-value=0.23  Score=43.83  Aligned_cols=30  Identities=10%  Similarity=-0.016  Sum_probs=28.0

Q ss_pred             CeEEEcCcEEEeccCCCCCcccccccCCCC
Q 006654          577 DLLEISDDVVVLNDLYPKVHPSDNLPPGTL  606 (636)
Q Consensus       577 ~~~~~~~~~~~~~d~~pk~~~~~l~~~~~~  606 (636)
                      -++|-||+++++-|.+|.+..|+||+|+.-
T Consensus        31 riV~e~~~~~a~~p~~p~~p~h~lIiPk~h   60 (156)
T d1z84a2          31 FVIDESSHFVSVAPFAATYPFEIWIIPKDH   60 (156)
T ss_dssp             EEEEECSSEEEEECTTCSSTTCEEEEESSC
T ss_pred             EEEEECCCEEEEEccCCCcCcEEEEEecch
Confidence            399999999999999999999999999864

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=83.94  E-value=0.42  Score=45.35  Aligned_cols=23  Identities=26%  Similarity=0.504  Sum_probs=19.6

Q ss_pred             EEEEccCCCcHHHHHHHHHHHcC
Q 006654           23 VIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        23 IvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      |+|.|.+|+||+++|+.+.....
T Consensus        26 vlI~Ge~GtGK~~~A~~ih~~s~   48 (247)
T d1ny5a2          26 VLITGESGVGKEVVARLIHKLSD   48 (247)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHST
T ss_pred             EEEECCCCcCHHHHHHHHHHhcC
Confidence            57789999999999999976543

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.81  E-value=0.28  Score=43.71  Aligned_cols=23  Identities=22%  Similarity=0.401  Sum_probs=20.2

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHH
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      .-|+++|.+|+|||||..++...
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            35899999999999999998764

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=83.48  E-value=0.27  Score=46.42  Aligned_cols=24  Identities=25%  Similarity=0.380  Sum_probs=20.3

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHc
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      ...+|+|.+|+|||||..+|....
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~  119 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGL  119 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             CeEEEECCCCCCHHHHHHhhcchh
Confidence            457899999999999999986543

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=82.82  E-value=0.62  Score=43.93  Aligned_cols=39  Identities=18%  Similarity=0.252  Sum_probs=29.5

Q ss_pred             cCccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhh
Q 006654           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDT   55 (636)
Q Consensus        17 ~~~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~   55 (636)
                      .+..++|++.|-=|+||||++-.|+..+   |.+...||.|-
T Consensus        17 ~~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp   58 (279)
T d1ihua2          17 RNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDP   58 (279)
T ss_dssp             TTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCC
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            4567899999999999999877766433   45566777773

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=82.58  E-value=0.087  Score=46.31  Aligned_cols=25  Identities=24%  Similarity=0.434  Sum_probs=20.8

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHc
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      +.+.+|+|+.||||||+..+|.--+
T Consensus        24 ~~~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          24 ELVTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             HHHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            3467899999999999999997544

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=82.55  E-value=0.35  Score=44.53  Aligned_cols=24  Identities=21%  Similarity=0.271  Sum_probs=20.8

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHHc
Q 006654           21 ILVIMVGAPGSGKSTFCEHVMRSS   44 (636)
Q Consensus        21 ~LIvLvG~PGSGKSTlAr~Lak~~   44 (636)
                      .-|.++|-+++|||||..+|....
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~~~   27 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTYVA   27 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHh
Confidence            459999999999999999997543

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.14  E-value=0.36  Score=42.50  Aligned_cols=22  Identities=32%  Similarity=0.452  Sum_probs=19.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHHH
Q 006654           22 LVIMVGAPGSGKSTFCEHVMRS   43 (636)
Q Consensus        22 LIvLvG~PGSGKSTlAr~Lak~   43 (636)
                      -|+|+|..|+||||+.+++...
T Consensus         4 KivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            3799999999999999998754

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.65  E-value=0.81  Score=41.58  Aligned_cols=37  Identities=16%  Similarity=0.242  Sum_probs=27.0

Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHHc---CCCeEEeehhh
Q 006654           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDT   55 (636)
Q Consensus        19 ~p~LIvLvG~PGSGKSTlAr~Lak~~---~~~~~~Is~D~   55 (636)
                      |+.+.+..|-.|+||||+|..|+..+   +.+...||.|.
T Consensus         1 ~kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~   40 (232)
T d1hyqa_           1 VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI   40 (232)
T ss_dssp             CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CEEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            34566777999999999999877543   45566777553

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=80.16  E-value=0.31  Score=46.68  Aligned_cols=26  Identities=27%  Similarity=0.403  Sum_probs=21.3

Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHHcC
Q 006654           20 QILVIMVGAPGSGKSTFCEHVMRSSA   45 (636)
Q Consensus        20 p~LIvLvG~PGSGKSTlAr~Lak~~~   45 (636)
                      +.+-+|+|+.||||||+-+++.--++
T Consensus        24 ~~lnvlvG~NgsGKS~iL~Ai~~~lg   49 (308)
T d1e69a_          24 DRVTAIVGPNGSGKSNIIDAIKWVFG   49 (308)
T ss_dssp             SSEEEEECCTTTCSTHHHHHHHHTSC
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            45789999999999999998864443