Citrus Sinensis ID: 006658

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630------
MEIISTSAPTVLDVISTKELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGISDEEQIQEANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPLVEDLTPVPDARVPVIKFKFNGVSVDLLYAQLQFSVIPEDLDSLQDSLLHNLDEQTVLSLNGCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQLYPNALPNVLVSRFFKIFAHWKWPNPVMLCPIQYQAMPHHVWDPRSNQRDRKHLMPIITPSYPCTNSSYNVSSTTLRIMQEEFQRAKELCEEIEAGKRTWITLFEPYHFFGSFKNYLQIHIAAKNAGDFRQWKGWVESRLRQLIHMIERDMGGVLQCRLYPGDFSENSVKSSSQCHYFMGLGRKQGVSPQDGEKFDMRLTVEEFKSHVVWMYSSWKQGMQIHVSHLRCQDIPDFVFPGGVRPPKSLNEKKRKRIEVIESTKLKKSESSTAGHSSGQKSSQTESGVALDGSHGLKSGPSVEPSTSSVSSSTSASSRPQRPAVSIETEDDNATSVSQAQNFNQVGATVAAALATGTISSFCQNESLEELEPPELTAPCFKTAFVATQKPIIKLQFSSLVK
ccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccEEEEEcccccccccccccEEEEEEccccccccHHHHHHHHHHHccccccccccccccccccEEEEEEcccEEcEEEEEccccccccccccccHHHHccccHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccEEEcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccccccccccEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHccccccEEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccc
ccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcccEEEEEccEEcccccccccccEEEEcccccccHHHHHHHHHHHHHccccHHccccccccEEEEEEEEEccEEEEEEEEEcccccccccccccccHHHHcccHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccEEEcccccccccccccccccccccccccccEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccHHHHHcEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccccccccccEEEEEEEEEEEcccccccccEEEEEccHHHHHHHHHHHHHHcccccEEEEEEEEHccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccc
meiistsaptvldvISTKELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVtmdkgisdEEQIQEANAKLftfgsyrlgvagpstdidalcvgpcyatrhddFFGKLFRMLqetplvedltpvpdarvpvikFKFNGVSVDLLYAQLQFSVIPEDLDSLQDSLlhnldeqtvlslngcrvtdRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQlypnalpnvLVSRFFKIFahwkwpnpvmlcpiqyqamphhvwdprsnqrdrkhlmpiitpsypctnssynvssTTLRIMQEEFQRAKELCEEIEAGKRTWITlfepyhffgsfKNYLQIHIAAKnagdfrqwkGWVESRLRQLIHMIERDMGgvlqcrlypgdfsensvksssqchyfmglgrkqgvspqdgekfdmrLTVEEFKSHVVWMYSSWKQGMQIHVSHlrcqdipdfvfpggvrppkslnekKRKRIEVIEStklkksesstaghssgqkssqtesgvaldgshglksgpsvepstssvssstsassrpqrpavsieteddnatsvsqAQNFNQVGATVAAALATGTissfcqnesleeleppeltapcfkTAFVAtqkpiiklQFSSLVK
meiistsaptvldvistKELEKILVDEklfaseeeslgrvevlgrldgivkDWIKRVTMDKGISDEEQIQEANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPlvedltpvpdARVPVIKFKFNGVSVDLLYAQLQFSVIPEDLDSLQDSLLHNLDEQTVLSLNGCRVTDRilslvpnirnfrstLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQLYPNALPNVLVSRFFKIFAHWKWPNPVMLCPIQYQAMPHHVWDPRSNQRDRKHLmpiitpsypctnssYNVSSTTLRIMQEEFQRAKELCEEIEAGKRTWITLFEPYHFFGSFKNYLQIHIAAKNAGDFRQWKGWVESRLRQLIHMIERDMGGVLQCRLYPGDFSENSVKSSSQCHYFMGLGRKQGVSPQDGEKFDMRLTVEEFKSHVVWMYSSWKQGMQIHVSHLRCQDIPDFvfpggvrppkslnekkrkrieviestklkksesstaghssgqkssqtESGVALDGSHGlksgpsvepstssvssstsassrpqrpaVSIETEDDNATSVSQAQNFNQVGATVAAALATGTISSFCQNESLEELEPPELTAPCFKTAFVATQKPiiklqfsslvk
MEIISTSAPTVLDVISTKELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGISDEEQIQEANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPLVEDLTPVPDARVPVIKFKFNGVSVDLLYAQLQFSVIPEDLDSLQDSLLHNLDEQTVLSLNGCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQLYPNALPNVLVSRFFKIFAHWKWPNPVMLCPIQYQAMPHHVWDPRSNQRDRKHLMPIITPSYPCTNSSYNVSSTTLRIMQEEFQRAKELCEEIEAGKRTWITLFEPYHFFGSFKNYLQIHIAAKNAGDFRQWKGWVESRLRQLIHMIERDMGGVLQCRLYPGDFSENSVKSSSQCHYFMGLGRKQGVSPQDGEKFDMRLTVEEFKSHVVWMYSSWKQGMQIHVSHLRCQDIPDFVFPGGVRPPKSLNEKKRKRIEVIestklkksesstAGHSSGQKSSQTESGVALDGSHGLKsgpsvepstssvssstsassRPQRPAVSIETEDDNATSVSQAQNFNQvgatvaaalatgtISSFCQNesleeleppelTAPCFKTAFVATQKPIIKLQFSSLVK
*********TVLDVISTKELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGISDEEQIQEANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPLVEDLTPVPDARVPVIKFKFNGVSVDLLYAQLQFSVIPEDLDSLQDSLLHNLDEQTVLSLNGCRVTDRILSLVPNIRNFRSTLRCLRFWAKRR********FLGGINWALLVARVCQLYPNALPNVLVSRFFKIFAHWKWPNPVMLCPIQYQAMPHHVWDP********HLMPIITPSYPCTNSSYNVSSTTLRIMQEEFQRAKELCEEIEAGKRTWITLFEPYHFFGSFKNYLQIHIAAKNAGDFRQWKGWVESRLRQLIHMIERDMGGVLQCRLYPGDFS********QCHYFMGLG************FDMRLTVEEFKSHVVWMYSSWKQGMQIHVSHLRCQDIPDFVFPGG****************************************************************************************************NQVGATVAAALATGTISSFCQNE********ELTAPCFKTAFVATQKPIIKLQF*****
MEIISTSAPTVLDVISTKELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGISDEEQIQEANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPLVEDLTPVPDARVPVIKFKFNGVSVDLLYAQLQFSVIPEDLDSLQDSLLHNLDEQTVLSLNGCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQLYPNALPNVLVSRFFKIFAHWKWPNPVMLCPIQYQAMPHHVWDPRSNQRDRKHLMPIITPSYPCTNSSYNVSSTTLRIMQEEFQRAKELCEEIEAGKRTWITLFEPYHFFGSFKNYLQIHIAAKNAGDFRQWKGWVESRLRQLIHMIERDMGGVLQCRLYPGDFSENSVKSSSQCHYFMGLGRKQG****DGEKFDMRLTVEEFKSHVVWMYSSWKQGMQIHVSHLRCQDIPDFV************************************************************************************************************************************************************QFSSL**
********PTVLDVISTKELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGISDEEQIQEANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPLVEDLTPVPDARVPVIKFKFNGVSVDLLYAQLQFSVIPEDLDSLQDSLLHNLDEQTVLSLNGCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQLYPNALPNVLVSRFFKIFAHWKWPNPVMLCPIQYQAMPHHVWDPRSNQRDRKHLMPIITPSYPCTNSSYNVSSTTLRIMQEEFQRAKELCEEIEAGKRTWITLFEPYHFFGSFKNYLQIHIAAKNAGDFRQWKGWVESRLRQLIHMIERDMGGVLQCRLYPGDFSENSVKSSSQCHYFMGLGRKQGVSPQDGEKFDMRLTVEEFKSHVVWMYSSWKQGMQIHVSHLRCQDIPDFVFPGGVRPPKSLNEKKRKRIEVIEST*************************************************************************SQAQNFNQVGATVAAALATGTISSFCQNESLEELEPPELTAPCFKTAFVATQKPIIKLQFSSLVK
*****TSAPTVLDVISTKELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGISDEEQIQEANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPLVEDLTPVPDARVPVIKFKFNGVSVDLLYAQLQFSVIPEDLDSLQDSLLHNLDEQTVLSLNGCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQLYPNALPNVLVSRFFKIFAHWKWPNPVMLCPIQYQAMPHHVWDPRSNQRDRKHLMPIITPSYPCTNSSYNVSSTTLRIMQEEFQRAKELCEEIEAGKRTWITLFEPYHFFGSFKNYLQIHIAAKNAGDFRQWKGWVESRLRQLIHMIERDMGGVLQCRLYPGDFSENSVKSSSQCHYFMGLGRKQGVSPQDGEKFDMRLTVEEFKSHVVWMYSSWKQGMQIHVSHLRCQDIPDFVFPGG**************************************************************************************************************************************************KPIIKLQFSSL**
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MEIISTSAPTVLDVISTKELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGISDEEQIQEANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPLVEDLTPVPDARVPVIKFKFNGVSVDLLYAQLQFSVIPEDLDSLQDSLLHNLDEQTVLSLNGCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQLYPNALPNVLVSRFFKIFAHWKWPNPVMLCPIQYQAMPHHVWDPRSNQRDRKHLMPIITPSYPCTNSSYNVSSTTxxxxxxxxxxxxxxxxxxxxxKRTWITLFEPYHFFGSFKNYLQIHIAAKNAGDFRQWKGWVESRLRQLIHMIERDMGGVLQCRLYPGDFSENSVKSSSQCHYFMGLGRKQGVSPQDGEKFDMRLTVEEFKSHVVWMYSSWKQGMQIHVSHLRCQDIPDFVFPGGVRPPKSLNEKKRKRIEVIESTKLKKSESSTAGHSSGQKSSQTESGVALDGSHGLKSGPSVEPSTSSVSSSTSASSRPQRPAVSIETEDDNATSVSQAQNFNQVGATVAAALATGTISSFCQNESLEELEPPELTAPCFKTAFVATQKPIIKLQFSSLVK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query636 2.2.26 [Sep-21-2011]
Q54J73 809 Poly(A) polymerase OS=Dic yes no 0.784 0.616 0.448 1e-122
Q9BWT3736 Poly(A) polymerase gamma yes no 0.900 0.778 0.364 1e-104
Q6PCL9739 Poly(A) polymerase gamma yes no 0.907 0.780 0.365 1e-104
Q9NRJ5636 Poly(A) polymerase beta O no no 0.841 0.841 0.393 1e-100
P51003 745 Poly(A) polymerase alpha no no 0.860 0.734 0.389 1e-99
P25500739 Poly(A) polymerase alpha no no 0.834 0.718 0.391 2e-99
Q61183739 Poly(A) polymerase alpha no no 0.861 0.741 0.385 8e-99
Q9WVP6641 Poly(A) polymerase beta O no no 0.841 0.834 0.384 1e-96
Q10295566 Poly(A) polymerase pla1 O yes no 0.776 0.872 0.363 3e-95
O42617558 Poly(A) polymerase PAPalp N/A no 0.627 0.715 0.436 7e-95
>sp|Q54J73|PAP_DICDI Poly(A) polymerase OS=Dictyostelium discoideum GN=papA PE=3 SV=1 Back     alignment and function desciption
 Score =  441 bits (1133), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/513 (44%), Positives = 320/513 (62%), Gaps = 14/513 (2%)

Query: 2   EIISTSAPTVLDVISTKELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDK 61
           E IST+ P+ +D   + ELE  L+   LF S EES  R E+LG+L+ IV++W K+V++ K
Sbjct: 57  EPISTAPPSSIDFKLSTELENTLISFNLFESPEESRKREEILGKLNQIVREWAKQVSLKK 116

Query: 62  GISDEEQIQEANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETP 121
           G   E+   E  AK+FTFGSYRLGV GP +DID LCVGP +  R  DFF  L  +L+  P
Sbjct: 117 GYP-EQTASEVVAKIFTFGSYRLGVHGPGSDIDTLCVGPKHIMR-SDFFDDLSDILKVHP 174

Query: 122 LVEDLTPVPDARVPVIKFKFNGVSVDLLYAQLQFSVIPEDLDSLQD-SLLHNLDEQTVLS 180
            + + T V DA VPVI   F+G+ +DL+YA+L  + IPE+L+ L D S L N+DE+++LS
Sbjct: 175 EITEFTTVKDAFVPVITMVFSGIPIDLIYAKLALTAIPEELNDLIDESFLKNIDEKSILS 234

Query: 181 LNGCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQLY 240
           LNGCRVTD+IL LVPNI NFR  LRC++ WA RRGIYSN +GFLGG++WALL AR+CQLY
Sbjct: 235 LNGCRVTDQILKLVPNIPNFRMALRCIKLWAIRRGIYSNILGFLGGVSWALLTARICQLY 294

Query: 241 PNALPNVLVSRFFKIFAHWKWPNPVMLCPIQYQA-MPHHVWDPRSNQRDRKHLMPIITPS 299
           PN+ P+ ++ RFFK++  WKWP P++LC IQ    +   VW+P+   RD+ HLMPIITP+
Sbjct: 295 PNSAPSTIIHRFFKVYEIWKWPAPILLCHIQEGGILGPKVWNPK---RDKAHLMPIITPA 351

Query: 300 YPCTNSSYNVSSTTLRIMQEEFQRAKELCEEIEAGKRTWITLFEPYHFFGSFKNYLQIHI 359
           YP  NS+YNVS +TL++M+ EF R  E+  +IE G+ TW  L E   FF  +  Y++I  
Sbjct: 352 YPSMNSTYNVSKSTLQLMKSEFVRGAEITRKIETGECTWKNLLEKCDFFTRYSFYIEIDC 411

Query: 360 AAKNAGDFRQWKGWVESRLRQLIHMIERDMGGVLQCRLYPGDFSENSVKSSSQ----CHY 415
            + N  D R+W+GW+ES+LR LI  +E           YP  F+ N  K+++       +
Sbjct: 412 YSMNEEDSRKWEGWIESKLRFLISNLESTPKMKFAVP-YPKGFTNNLHKANNPDQICTSF 470

Query: 416 FMGLGRKQGVSPQDGEKFDMRLTVEEFKSHVV-WMYSSWK-QGMQIHVSHLRCQDIPDFV 473
           FMGL      +P   +  D+   V EF   +  W+ +      M I V +++ + +P FV
Sbjct: 471 FMGLSFNFSNTPGADKSVDLTKAVTEFTGIIKDWLRTQPNPDTMDIKVQYIKKKQLPAFV 530

Query: 474 FPGGVRPPKSLNEKKRKRIEVIESTKLKKSESS 506
              G   P    +K+    E   + K  KSE+S
Sbjct: 531 KDEGPEEPVKTTKKRSSTGEPSATRKKLKSENS 563
Polymerase that creates the 3'-poly(A) tail of mRNA's. May acquire specificity through interaction with a cleavage and polyadenylation factor.
Dictyostelium discoideum (taxid: 44689)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 1EC: 9
>sp|Q9BWT3|PAPOG_HUMAN Poly(A) polymerase gamma OS=Homo sapiens GN=PAPOLG PE=1 SV=2 Back     alignment and function description
>sp|Q6PCL9|PAPOG_MOUSE Poly(A) polymerase gamma OS=Mus musculus GN=Papolg PE=1 SV=1 Back     alignment and function description
>sp|Q9NRJ5|PAPOB_HUMAN Poly(A) polymerase beta OS=Homo sapiens GN=PAPOLB PE=2 SV=1 Back     alignment and function description
>sp|P51003|PAPOA_HUMAN Poly(A) polymerase alpha OS=Homo sapiens GN=PAPOLA PE=1 SV=4 Back     alignment and function description
>sp|P25500|PAPOA_BOVIN Poly(A) polymerase alpha OS=Bos taurus GN=PAPOLA PE=1 SV=3 Back     alignment and function description
>sp|Q61183|PAPOA_MOUSE Poly(A) polymerase alpha OS=Mus musculus GN=Papola PE=1 SV=4 Back     alignment and function description
>sp|Q9WVP6|PAPOB_MOUSE Poly(A) polymerase beta OS=Mus musculus GN=Papolb PE=1 SV=2 Back     alignment and function description
>sp|Q10295|PAP_SCHPO Poly(A) polymerase pla1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pla1 PE=2 SV=1 Back     alignment and function description
>sp|O42617|PAP_CANAL Poly(A) polymerase PAPalpha OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PAPALPHA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query636
297737752 802 unnamed protein product [Vitis vinifera] 0.988 0.784 0.520 0.0
359472651587 PREDICTED: poly(A) polymerase-like [Viti 0.786 0.851 0.620 0.0
449439435 748 PREDICTED: poly(A) polymerase-like [Cucu 0.987 0.839 0.499 0.0
255567792 770 Poly(A) polymerase alpha, putative [Rici 0.921 0.761 0.534 0.0
297734259651 unnamed protein product [Vitis vinifera] 0.959 0.937 0.540 0.0
357500153 752 Poly(A) polymerase [Medicago truncatula] 0.847 0.716 0.596 0.0
359490984 757 PREDICTED: poly(A) polymerase-like [Viti 0.776 0.652 0.636 0.0
356531174 757 PREDICTED: poly(A) polymerase-like [Glyc 0.746 0.627 0.651 0.0
224135441512 predicted protein [Populus trichocarpa] 0.75 0.931 0.640 0.0
297850192716 nucleotidyltransferase family protein [A 0.992 0.881 0.515 0.0
>gi|297737752|emb|CBI26953.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/696 (52%), Positives = 456/696 (65%), Gaps = 67/696 (9%)

Query: 2   EIISTSAPTVLDVISTKELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDK 61
           E IST+ PT  D+I T+ELEK L D  L+ + EE++ R EVLGR+D IVK W+K V+  K
Sbjct: 19  EPISTAGPTEFDLIKTRELEKFLADSGLYETREEAIRREEVLGRVDQIVKVWVKTVSRAK 78

Query: 62  GISDEEQIQEANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETP 121
           G  +E+ + EANAK+FTFGSYRLGV GP  DID LCVGP +ATR +DFFG+L RML ETP
Sbjct: 79  GF-NEQLVHEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATRDEDFFGELHRMLAETP 137

Query: 122 LVEDLTPVPDARVPVIKFKFNGVSVDLLYAQLQFSVIPEDLDSLQDSLLHNLDEQTVLSL 181
            V++L PVPDA VPV+KFKFNGVS+DLLYA+L   VIPEDLD  Q+++L N+DEQTV SL
Sbjct: 138 EVQELHPVPDAHVPVMKFKFNGVSIDLLYARLSLWVIPEDLDISQETILQNVDEQTVRSL 197

Query: 182 NGCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQLYP 241
           NGCRVTD+IL LVPNI+NFR+TLRC+RFWAKRRG+YSN  GFLGGINWALLVAR+CQLYP
Sbjct: 198 NGCRVTDQILRLVPNIQNFRTTLRCMRFWAKRRGVYSNVSGFLGGINWALLVARICQLYP 257

Query: 242 NALPNVLVSRFFKIFAHWKWPNPVMLCPIQYQAMPHHVWDPRSNQRDRKHLMPIITPSYP 301
           NA+P+ LVSRFF+++  W+WPNPVMLCPI+ + +   VWDPR N +DR HLMPIITP+YP
Sbjct: 258 NAVPSTLVSRFFRVYTQWRWPNPVMLCPIEEKCLGLPVWDPRRNIKDRNHLMPIITPAYP 317

Query: 302 CTNSSYNVSSTTLRIMQEEFQRAKELCEEIEAGKRTWITLFEPYHFFGSFKNYLQIHIAA 361
             NSSYNVS +TLRIM+EE QR  E+ +E+E     WITLFEP+ FF ++KNYLQI I A
Sbjct: 318 SMNSSYNVSWSTLRIMEEELQRGNEIVKEMETENTGWITLFEPFLFFEAYKNYLQIDITA 377

Query: 362 KNAGDFRQWKGWVESRLRQLIHMIERDMGGVLQCRLYPGDFSENSVKSSSQCHYFMGLGR 421
           +N  D R WKGWVESRLR L   IERD GG+LQC  +P +FS+ S +S   C YFMGL R
Sbjct: 378 ENDVDLRNWKGWVESRLRLLTRKIERDTGGMLQCHPHPAEFSDTS-RSFHYC-YFMGLRR 435

Query: 422 KQGVSPQDGEKFDMRLTVEEFKSHVVWMYSSWKQGMQIHVSHLRCQDIPDFVFPGGVRPP 481
           K+G + Q+GE+FD+RLTV++FK + VWMYSSWK+GM IHV H+R ++IP+FVFPGGVRPP
Sbjct: 436 KEGSAAQEGEQFDIRLTVDDFK-NTVWMYSSWKRGMWIHVCHIRRKNIPNFVFPGGVRPP 494

Query: 482 KSL---------------NEKKRKRIEVIESTKLKKSESSTAGHSSGQKSSQTESGVALD 526
           + +               N +KRKR E+   +  ++S S      S  +       V ++
Sbjct: 495 QPMKVAGEQGQVSKPMGFNSQKRKRDEIDAGSHPRESTSLVENVESDLQGEVKLEQVEVN 554

Query: 527 GSHGLKSGPSVEPSTSSVSSSTSASSRPQRP---------------AVSIETE------- 564
               L        ++S  S      +R  +P               A+ IET        
Sbjct: 555 VGDSLTKVICSSENSSHNSIELEGYARCSQPLGAASSASGSLSLGRALVIETTSEPLVHQ 614

Query: 565 -------DDNATSVSQAQNFNQVGATVAAALATGT---------------ISSFCQNESL 602
                  +     V Q QNF+ VG  V    ++                  SS  QN  L
Sbjct: 615 CSSKEVGESQVGLVDQVQNFD-VGKRVNCVQSSTAERGMAAAAAGQGFSPCSSLFQNGGL 673

Query: 603 EELEPPELTAPCFK---TAFVATQKPIIKLQFSSLV 635
           EELE  ELTAP +     A    QK +I+L  +SL+
Sbjct: 674 EELEDAELTAPFYHGNPGASSTPQKHLIRLSVNSLM 709

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359472651|ref|XP_002280091.2| PREDICTED: poly(A) polymerase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449439435|ref|XP_004137491.1| PREDICTED: poly(A) polymerase-like [Cucumis sativus] gi|449521033|ref|XP_004167536.1| PREDICTED: poly(A) polymerase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255567792|ref|XP_002524874.1| Poly(A) polymerase alpha, putative [Ricinus communis] gi|223535837|gb|EEF37498.1| Poly(A) polymerase alpha, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297734259|emb|CBI15506.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357500153|ref|XP_003620365.1| Poly(A) polymerase [Medicago truncatula] gi|355495380|gb|AES76583.1| Poly(A) polymerase [Medicago truncatula] Back     alignment and taxonomy information
>gi|359490984|ref|XP_002279968.2| PREDICTED: poly(A) polymerase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356531174|ref|XP_003534153.1| PREDICTED: poly(A) polymerase-like [Glycine max] Back     alignment and taxonomy information
>gi|224135441|ref|XP_002322074.1| predicted protein [Populus trichocarpa] gi|222869070|gb|EEF06201.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297850192|ref|XP_002892977.1| nucleotidyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297338819|gb|EFH69236.1| nucleotidyltransferase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query636
TAIR|locus:2030943713 PAPS1 "poly(A) polymerase 1" [ 0.745 0.664 0.632 3.5e-165
TAIR|locus:2043560 800 PAPS2 "poly(A) polymerase 2" [ 0.764 0.607 0.546 2.4e-147
TAIR|locus:2134113 765 nPAP "nuclear poly(a) polymera 0.748 0.622 0.551 3.9e-147
DICTYBASE|DDB_G0288259 809 papA "poly(A) polymerase" [Dic 0.756 0.594 0.454 2.9e-110
ZFIN|ZDB-GENE-040426-1256744 papolg "poly(A) polymerase gam 0.757 0.647 0.432 1e-100
UNIPROTKB|Q9NRJ5636 PAPOLB "Poly(A) polymerase bet 0.817 0.817 0.398 9.7e-96
UNIPROTKB|A5D7N5740 PAPOLG "Uncharacterized protei 0.753 0.647 0.406 2.6e-95
UNIPROTKB|F1NKG9737 PAPOLA "Uncharacterized protei 0.765 0.660 0.409 3.3e-95
UNIPROTKB|Q9BWT3736 PAPOLG "Poly(A) polymerase gam 0.800 0.691 0.391 3.3e-95
UNIPROTKB|F1SQL7741 PAPOLG "Uncharacterized protei 0.800 0.686 0.389 3.3e-95
TAIR|locus:2030943 PAPS1 "poly(A) polymerase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1580 (561.2 bits), Expect = 3.5e-165, Sum P(2) = 3.5e-165
 Identities = 303/479 (63%), Positives = 360/479 (75%)

Query:     2 EIISTSAPTVLDVISTKELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDK 61
             E IS   PT  DVI T+ELEK L D  L+ S+EE++ R EVLG LD IVK WIK ++  K
Sbjct:    15 EPISMGGPTEFDVIKTRELEKHLQDVGLYESKEEAVRREEVLGILDQIVKTWIKTISRAK 74

Query:    62 GISDEEQIQEANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETP 121
             G++D+  + EANAK+FTFGSYRLGV GP  DID LCVGP +ATR  DFFG+L RML E P
Sbjct:    75 GLNDQ-LLHEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREGDFFGELQRMLSEMP 133

Query:   122 LVEDLTPVPDARVPVIKFKFNGVSVDLLYAQLQFSVIPEDLDSLQDSLLHNLDEQTVLSL 181
              V +L PVPDA VP++ FK NGVS+DLLYAQL   VIPEDLD  QDS+L N DEQTV SL
Sbjct:   134 EVTELHPVPDAHVPLMGFKLNGVSIDLLYAQLPLWVIPEDLDLSQDSILQNADEQTVRSL 193

Query:   182 NGCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQLYP 241
             NGCRVTD+IL LVPNI+NFR+TLRC+RFWAKRRG+YSN  GFLGGINWALLVAR+CQLYP
Sbjct:   194 NGCRVTDQILRLVPNIQNFRTTLRCMRFWAKRRGVYSNVSGFLGGINWALLVARICQLYP 253

Query:   242 NALPNVLVSRFFKIFAHWKWPNPVMLCPIQYQAMPHHVWDPRSNQRDRKHLMPIITPSYP 301
             NALPN+LVSRFF++F  W WPN + LC     ++   VWDPR N +DR H+MPIITP+YP
Sbjct:   254 NALPNILVSRFFRVFYQWNWPNAIFLCSPDEGSLGLQVWDPRINPKDRLHIMPIITPAYP 313

Query:   302 CTNSSYNVSSTTLRIMQEEFQRAKELCEEIEAGKRTWITLFEPYHFFGSFKNYLQIHIAA 361
             C NSSYNVS +TLRIM+ EFQR  E+CE +E+ K  W TLFEP+ FF ++KNYLQI I+A
Sbjct:   314 CMNSSYNVSESTLRIMKGEFQRGNEICEAMESNKADWDTLFEPFAFFEAYKNYLQIDISA 373

Query:   362 KNAGDFRQWKGWVESRLRQLIHMIERDMGGVLQCRLYPGDFSENSVKSSSQCHYFMGLGR 421
              N  D R+WKGWVESRLRQL   IER    +L C  +P DF + S      C YFMGL R
Sbjct:   374 ANVDDLRKWKGWVESRLRQLTLKIERHFK-MLHCHPHPHDFQDTS--RPLHCSYFMGLQR 430

Query:   422 KQGVSPQDGEKFDMRLTVEEFKSHVVWMYSSWKQGMQIHVSHLRCQDIPDFVFPGGVRP 480
             KQGV   +GE+FD+R TVEEFK H V  Y+ W  GM+I V H++ + +P+FVFPGGVRP
Sbjct:   431 KQGVPAAEGEQFDIRRTVEEFK-HTVNAYTLWIPGMEISVGHIKRRSLPNFVFPGGVRP 488
GO:0003723 "RNA binding" evidence=IEA
GO:0004652 "polynucleotide adenylyltransferase activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA;IDA
GO:0016779 "nucleotidyltransferase activity" evidence=IEA;ISS
GO:0005515 "protein binding" evidence=IPI
GO:0043631 "RNA polyadenylation" evidence=IDA
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0006396 "RNA processing" evidence=RCA
TAIR|locus:2043560 PAPS2 "poly(A) polymerase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2134113 nPAP "nuclear poly(a) polymerase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0288259 papA "poly(A) polymerase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1256 papolg "poly(A) polymerase gamma" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NRJ5 PAPOLB "Poly(A) polymerase beta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A5D7N5 PAPOLG "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1NKG9 PAPOLA "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BWT3 PAPOLG "Poly(A) polymerase gamma" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SQL7 PAPOLG "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.70.691
4th Layer2.7.7.19LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00017746001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (505 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00037665001
SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (740 aa)
    ••• 0.472
GSVIVG00038486001
SubName- Full=Chromosome chr16 scaffold_94, whole genome shotgun sequence; (1448 aa)
    ••• 0.449

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query636
PTZ00418593 PTZ00418, PTZ00418, Poly(A) polymerase; Provisiona 0.0
pfam04928349 pfam04928, PAP_central, Poly(A) polymerase central 1e-178
COG5186552 COG5186, PAP1, Poly(A) polymerase [RNA processing 1e-139
pfam04926141 pfam04926, PAP_RNA-bind, Poly(A) polymerase predic 1e-37
cd05402114 cd05402, NT_PAP_TUTase, Nucleotidyltransferase (NT 1e-25
pfam0190992 pfam01909, NTP_transf_2, Nucleotidyltransferase do 4e-05
cd0539749 cd05397, NT_Pol-beta-like, Nucleotidyltransferase 0.001
>gnl|CDD|240410 PTZ00418, PTZ00418, Poly(A) polymerase; Provisional Back     alignment and domain information 
 Score =  526 bits (1357), Expect = 0.0
 Identities = 218/557 (39%), Positives = 324/557 (58%), Gaps = 32/557 (5%)

Query: 4   ISTSAPTVLDVISTKELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGI 63
           IS + PT  D+  + EL  +L    L+ +EE    R  VLG L+ +V++++   ++++GI
Sbjct: 58  ISLNGPTEEDLKLSNELINLLKSYNLYETEEGKKKRERVLGSLNKLVREFVVEASIEQGI 117

Query: 64  SDEEQIQEANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPLV 123
           ++EE  Q  + KLFTFGSYRLGV  P +DID LC+ P + TR + FF   +  LQ+ P +
Sbjct: 118 NEEEASQ-ISGKLFTFGSYRLGVVAPGSDIDTLCLAPRHITR-ESFFSDFYAKLQQDPNI 175

Query: 124 EDLTPVPDARVPVIKFKFNGVSVDLLYAQLQFSVIPEDLDSLQ-DSLLHNLDEQTVLSLN 182
             L PVPDA  PVIKF ++G+ +DLL+A L    IP+ L+SL  D +L N+DE+TV SLN
Sbjct: 176 TKLQPVPDAYTPVIKFVYDGIDIDLLFANLPLPTIPDCLNSLDDDYILRNVDEKTVRSLN 235

Query: 183 GCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQLYPN 242
           GCRV D IL+ VPN   FR+TLR ++ WAKRRGIYSN +G+LGG++WA+L AR+CQLYPN
Sbjct: 236 GCRVADLILASVPNKDYFRTTLRFIKLWAKRRGIYSNVLGYLGGVSWAILTARICQLYPN 295

Query: 243 ALPNVLVSRFFKIFAHWKWPNPVMLCPIQYQA-----MPHHVWDPRSNQRDRKHLMPIIT 297
             P+ L+ +FF++++ W W NPV+LC I+        M   VWDPR N +DR HLMPIIT
Sbjct: 296 FAPSQLIHKFFRVYSIWNWKNPVLLCKIKEVPNIPGLMNFKVWDPRVNPQDRAHLMPIIT 355

Query: 298 PSYPCTNSSYNVSSTTLRIMQEEFQRAKELCEEIEAGKR-TWITLFEPYHFFGSFKNYLQ 356
           P++P  NS++NV+ TT R++ EEF+RA E+ + IE     TW  + EP  FF S+K++L 
Sbjct: 356 PAFPSMNSTHNVTYTTKRVITEEFKRAHEIIKYIEKNSENTWTNVLEPLDFFTSYKHFLV 415

Query: 357 IHIAAKNAGDFRQWKGWVESRLRQLIHMIERDMGGVLQCRLYPGDFSENSVKSSSQCHYF 416
           I + A N     +W+GW+ES++R LI  +E      L+ R YP  F            +F
Sbjct: 416 IQVYATNEHVHNKWEGWIESKIRFLIKKLETLNN--LKIRPYPKFFKYQDDGWDYASSFF 473

Query: 417 MGLGRKQGVSPQDGEKFDMRLTVEEFKSHVV-WM-YSSWKQGMQIHVSHLRCQDIPDFVF 474
           +GL         +   FD+R  + +F   +  W     +   + I++ +L+   +P FV 
Sbjct: 474 IGLVFFSKNVY-NNSTFDLRYAIRDFVDIINNWPEMEKYPDQIDINIKYLKKSQLPAFV- 531

Query: 475 PGGVRPPKSLNEKKRKRIEVIESTKLKKSESSTAGHSSGQKSSQTESGVALDGSHGLKSG 534
                         +   E +  TK     ++++  +SGQ  S   +      S+  +S 
Sbjct: 532 ------------LSQTPEEPV-KTKANTKTNTSSATTSGQSGSSGST----SNSNSNESS 574

Query: 535 PSVEPSTSSVSSSTSAS 551
           P++  +     SSTS +
Sbjct: 575 PTMSSTELLNVSSTSTT 591

Length = 593
>gnl|CDD|203124 pfam04928, PAP_central, Poly(A) polymerase central domain Back     alignment and domain information
>gnl|CDD|227513 COG5186, PAP1, Poly(A) polymerase [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|218331 pfam04926, PAP_RNA-bind, Poly(A) polymerase predicted RNA binding domain Back     alignment and domain information
>gnl|CDD|143392 cd05402, NT_PAP_TUTase, Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases Back     alignment and domain information
>gnl|CDD|216779 pfam01909, NTP_transf_2, Nucleotidyltransferase domain Back     alignment and domain information
>gnl|CDD|143387 cd05397, NT_Pol-beta-like, Nucleotidyltransferase (NT) domain of DNA polymerase beta and similar proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 636
KOG2245562 consensus Poly(A) polymerase and related nucleotid 100.0
PTZ00418593 Poly(A) polymerase; Provisional 100.0
COG5186552 PAP1 Poly(A) polymerase [RNA processing and modifi 100.0
PF04928254 PAP_central: Poly(A) polymerase central domain; In 100.0
COG5260482 TRF4 DNA polymerase sigma [DNA replication, recomb 99.98
PF04926157 PAP_RNA-bind: Poly(A) polymerase predicted RNA bin 99.97
KOG1906514 consensus DNA polymerase sigma [Replication, recom 99.96
cd05402114 NT_PAP_TUTase Nucleotidyltransferase (NT) domain o 99.79
KOG2277596 consensus S-M checkpoint control protein CID1 and 99.72
TIGR03671408 cca_archaeal CCA-adding enzyme. 99.57
PRK13300447 tRNA CCA-pyrophosphorylase; Provisional 99.55
COG1746443 CCA1 tRNA nucleotidyltransferase (CCA-adding enzym 99.19
PF03813 972 Nrap: Nrap protein; InterPro: IPR005554 Members of 99.1
smart00572246 DZF domain in DSRM or ZnF_C2H2 domain containing p 98.39
KOG2054 1121 consensus Nucleolar RNA-associated protein (NRAP) 98.26
cd05400143 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT 97.69
cd0539749 NT_Pol-beta-like Nucleotidyltransferase (NT) domai 97.45
PF0382860 PAP_assoc: Cid1 family poly A polymerase; InterPro 97.42
PF0190993 NTP_transf_2: Nucleotidyltransferase domain A subs 97.33
PF09249114 tRNA_NucTransf2: tRNA nucleotidyltransferase, seco 97.14
cd0540393 NT_KNTase_like Nucleotidyltransferase (NT) domain 97.04
PF03813972 Nrap: Nrap protein; InterPro: IPR005554 Members of 96.7
PF14091152 DUF4269: Domain of unknown function (DUF4269) 96.13
COG166997 Predicted nucleotidyltransferases [General functio 95.94
PF07528248 DZF: DZF domain; InterPro: IPR006561 This domain i 95.34
PRK13746262 aminoglycoside resistance protein; Provisional 94.64
COG1708128 Predicted nucleotidyltransferases [General functio 94.51
cd00141307 NT_POLXc Nucleotidyltransferase (NT) domain of fam 92.8
PRK02098221 phosphoribosyl-dephospho-CoA transferase; Provisio 91.78
PF10421190 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 91.72
TIGR03135202 malonate_mdcG holo-ACP synthase, malonate decarbox 90.82
PF14792112 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1R 87.59
cd05401172 NT_GlnE_GlnD_like Nucleotidyltransferase (NT) doma 86.63
COG1665315 Predicted nucleotidyltransferase [General function 85.34
PF03445138 DUF294: Putative nucleotidyltransferase DUF294; In 83.73
KOG3793362 consensus Transcription factor NFAT, subunit NF45 81.98
>KOG2245 consensus Poly(A) polymerase and related nucleotidyltransferases [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=2.6e-140  Score=1125.11  Aligned_cols=473  Identities=50%  Similarity=0.898  Sum_probs=454.1

Q ss_pred             CCCCCCCCCChhhhhchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHhhhcCeEEEEee
Q 006658            1 MEIISTSAPTVLDVISTKELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGISDEEQIQEANAKLFTFG   80 (636)
Q Consensus         1 t~PIS~~~Pt~~d~~~t~~L~~~L~~~~~~ps~EE~~~R~~vl~~L~~ivk~w~~~v~~~~g~~~~~~~~~~~~kI~~FG   80 (636)
                      |+|||+|+||++|+++|.+|+++|+++|+||++||..+|++||++|++||++|++++++++|++ ++++.+++|+|+|||
T Consensus        18 t~PiS~a~p~~~d~~lt~~L~~~L~~~g~fEs~eEt~~R~~VL~~L~~iVk~wVk~vs~~k~~p-~~~~~~aggkIftfG   96 (562)
T KOG2245|consen   18 TQPISTAGPTEADIALTQELIKTLKNEGLFESKEETQRREEVLGKLNQIVKEWVKKVSEQKGLP-DGMIENAGGKIFTFG   96 (562)
T ss_pred             cCCcccCCCcHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hhhhhhcCceEEecc
Confidence            7899999999999999999999999999999999999999999999999999999999999999 899999999999999


Q ss_pred             eeecCCCCCCCceeEEEecCCCCCchhhHHHHHHHHHhcCCCccceeeecCCcccEEEEEEcCeeeeEeeeecccCCCCC
Q 006658           81 SYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPLVEDLTPVPDARVPVIKFKFNGVSVDLLYAQLQFSVIPE  160 (636)
Q Consensus        81 Sy~lGv~~p~SDID~l~v~P~~v~r~~~FF~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~~GI~iDLsfa~l~~~~~p~  160 (636)
                      |||||||+||||||+|||+|+|++|+ |||..|.++|+++++|++|++|++|+||||||+|+||+|||+||+++.+.+|+
T Consensus        97 SYRLGVhg~GADIDtLcV~Prhv~R~-DFF~sf~~mL~~~~eVteL~~V~dAfVPiikfKf~GI~IDllfArL~l~~VP~  175 (562)
T KOG2245|consen   97 SYRLGVHGPGADIDTLCVGPRHVSRS-DFFTSFYDMLKERPEVTELHAVEDAFVPIIKFKFDGIEIDLLFARLALPVVPE  175 (562)
T ss_pred             ceeecccCCCCCcceeeeccccccHH-HHHHHHHHHHhcCccccccccccccccceEEEEecCeeeeeeehhcccccCCC
Confidence            99999999999999999999999999 99999999999999999999999999999999999999999999999999999


Q ss_pred             ccCccchhhccccchhhhhhcchhhHHHHHHhhCCCchhhHHHHHHHHHHHHHcCCCCCCCcccchHHHHHHHHHHHhhC
Q 006658          161 DLDSLQDSLLHNLDEQTVLSLNGCRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQLY  240 (636)
Q Consensus       161 ~l~l~~d~lL~~lde~s~rSLNG~Rv~d~Il~lVP~~~~FR~llr~IK~WAK~RgIysn~~G~LGGiswaiLVa~vcQl~  240 (636)
                      +||+.||++|+|+||+|+||||||||||+||++||+.+.||.+|||||+|||+||||+|.+||||||+|||||||+||+|
T Consensus       176 dldl~ddslLknlDe~~vrSLNGcRVtdqiL~LVPn~~~F~~tLRaiKlWAKrrgVYsN~~GF~GGV~wA~LVARiCQLY  255 (562)
T KOG2245|consen  176 DLDLSDDSLLKNLDERCVRSLNGCRVTDQILKLVPNQENFRITLRAIKLWAKRRGVYSNVMGFLGGVAWAMLVARICQLY  255 (562)
T ss_pred             cccccchHhhhcccHHHHHHhcCcCHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCChhhHHHHHHHHhccCCCCCceeecccCCCCCCCcccCCCCCccCCCccceeeCCCCCCCCcccccChhhHHHHHHH
Q 006658          241 PNALPNVLVSRFFKIFAHWKWPNPVMLCPIQYQAMPHHVWDPRSNQRDRKHLMPIITPSYPCTNSSYNVSSTTLRIMQEE  320 (636)
Q Consensus       241 Pn~s~~~LL~~FF~~Ys~wdW~~pV~l~~~~~g~l~~~~W~p~~~~~Dr~~~MpIiTP~~P~~Nsa~nVs~stl~~I~~E  320 (636)
                      ||++++.|+.+||.+|++|+||+||+|++++++.+++++|||+.|+.||+|+||||||+||+||++||||+||+++|++|
T Consensus       256 PNA~~s~Lv~kfF~ifs~W~WP~PVlL~~ie~~~L~~~VWdPr~n~~DryHlMPIITPAyP~~nsthNVS~ST~~Vi~~E  335 (562)
T KOG2245|consen  256 PNASPSTLVAKFFRVFSQWNWPNPVLLKPIEEGNLNLPVWDPRVNPSDRYHLMPIITPAYPQMNSTHNVSRSTLKVITEE  335 (562)
T ss_pred             CCcchHHHHHHHHHHHhhccCCCceEeccccccccCccccCCCCCCCCcceecccccCCcccccccccccHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCccccccccccccccccEEEEEEEeCCcchhhhhhhhhHHHHHHHHHHHhhccCceeEEeeCCC
Q 006658          321 FQRAKELCEEIEAGKRTWITLFEPYHFFGSFKNYLQIHIAAKNAGDFRQWKGWVESRLRQLIHMIERDMGGVLQCRLYPG  400 (636)
Q Consensus       321 f~RA~~il~~i~~~~~~W~~Lf~~~~FF~~Yk~yl~I~v~a~~~e~~~~w~G~VESRlR~Lv~~LE~~~~~~~~~~p~P~  400 (636)
                      |+||.+||++|+.++.+|.+|||+++||.+|||||+|+++|.++|++.+|.||||||+|.|+.+||++ ..+..|||+|+
T Consensus       336 f~~g~~I~~~i~~~k~~W~~LFE~~~FF~rYk~yl~i~~~A~~~ed~l~w~G~vESriR~Lv~klE~~-~~i~~ahp~P~  414 (562)
T KOG2245|consen  336 FKRGLEICDDIELNKLDWSDLFELYNFFSRYKHYLQITASAATEEDLLKWVGWVESRIRQLVLKLERN-QVILIAHPNPK  414 (562)
T ss_pred             HHHHHHHHHHHHhccccHHHHhhhhHHHHHHhhHheeeeeccChHHHhhhhhHHHHHHHHHHHHHHhh-cceEEecCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999995 57999999999


Q ss_pred             CcCCCC---CCCcceEEEEEeeeecCCCCCCCCcccchHHHHHHHHHhhhh----hccccCCC--cEEEEEEecCCCCCC
Q 006658          401 DFSENS---VKSSSQCHYFMGLGRKQGVSPQDGEKFDMRLTVEEFKSHVVW----MYSSWKQG--MQIHVSHLRCQDIPD  471 (636)
Q Consensus       401 ~f~~~~---~~~~~~~~ffIGL~~~~~~~~~~~~~~dl~~~i~~F~~~~v~----~~~~~~~~--m~i~v~~vk~~~Lp~  471 (636)
                      .|.+..   ....|...|+|||...+      ..++||+..+++|. ..++    .+..+.+|  |.+.+.|++|++|+.
T Consensus       415 ~f~~~~~~~~~~~~~~~~~igl~~~e------~~~~Dlt~~iq~f~-~~v~~q~~~~~~~~~g~~~~~~~~~~krr~l~~  487 (562)
T KOG2245|consen  415 KFKDTYNCPLEEDPESLWFIGLEFDE------NVKIDLTKDIQSFK-KNVERQAVNLTLIKAGCDVEIDFGHVKRRSLIQ  487 (562)
T ss_pred             cccccccCCcccchhHhhhhcccccc------cccchhhhhHHHhh-hhhhhcceeeeeeeccccccccccccccccccc
Confidence            998643   23356789999998754      34599999999999 8887    55667888  777778999999999


Q ss_pred             ccCCCCCCCCCC
Q 006658          472 FVFPGGVRPPKS  483 (636)
Q Consensus       472 ~v~~~~~~p~~~  483 (636)
                      +++.+..|..|.
T Consensus       488 ~~~~~~l~~~k~  499 (562)
T KOG2245|consen  488 TITKEFLRLCKQ  499 (562)
T ss_pred             ccCHHHhhHHHh
Confidence            999988866553

>PTZ00418 Poly(A) polymerase; Provisional Back     alignment and domain information
>COG5186 PAP1 Poly(A) polymerase [RNA processing and modification] Back     alignment and domain information
>PF04928 PAP_central: Poly(A) polymerase central domain; InterPro: IPR007012 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs Back     alignment and domain information
>COG5260 TRF4 DNA polymerase sigma [DNA replication, recombination, and repair] Back     alignment and domain information
>PF04926 PAP_RNA-bind: Poly(A) polymerase predicted RNA binding domain; InterPro: IPR007010 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs Back     alignment and domain information
>KOG1906 consensus DNA polymerase sigma [Replication, recombination and repair] Back     alignment and domain information
>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases Back     alignment and domain information
>KOG2277 consensus S-M checkpoint control protein CID1 and related nucleotidyltransferases [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR03671 cca_archaeal CCA-adding enzyme Back     alignment and domain information
>PRK13300 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>COG1746 CCA1 tRNA nucleotidyltransferase (CCA-adding enzyme) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human Back     alignment and domain information
>smart00572 DZF domain in DSRM or ZnF_C2H2 domain containing proteins Back     alignment and domain information
>KOG2054 consensus Nucleolar RNA-associated protein (NRAP) [Function unknown] Back     alignment and domain information
>cd05400 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme Back     alignment and domain information
>cd05397 NT_Pol-beta-like Nucleotidyltransferase (NT) domain of DNA polymerase beta and similar proteins Back     alignment and domain information
>PF03828 PAP_assoc: Cid1 family poly A polymerase; InterPro: IPR002058 These PAP/25A associated domains are found in uncharacterised eukaryotic proteins, a number of which are described as 'topoisomerase 1-related' though they appear to have little or no homology to topoisomerase 1 Back     alignment and domain information
>PF01909 NTP_transf_2: Nucleotidyltransferase domain A subset of this Pfam family; InterPro: IPR002934 A small region that overlaps with a nuclear localization signal and binds to the RNA primer contains three aspartates that are essential for catalysis Back     alignment and domain information
>PF09249 tRNA_NucTransf2: tRNA nucleotidyltransferase, second domain; InterPro: IPR015329 This domain adopts a structure consisting of a five helical bundle core Back     alignment and domain information
>cd05403 NT_KNTase_like Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins Back     alignment and domain information
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human Back     alignment and domain information
>PF14091 DUF4269: Domain of unknown function (DUF4269) Back     alignment and domain information
>COG1669 Predicted nucleotidyltransferases [General function prediction only] Back     alignment and domain information
>PF07528 DZF: DZF domain; InterPro: IPR006561 This domain is found in proteins containing the double-stranded RNA-binding motif, DSRM (IPR001159 from INTERPRO), or the zinc finger domain C2H2 (IPR007087 from INTERPRO) Back     alignment and domain information
>PRK13746 aminoglycoside resistance protein; Provisional Back     alignment and domain information
>COG1708 Predicted nucleotidyltransferases [General function prediction only] Back     alignment and domain information
>cd00141 NT_POLXc Nucleotidyltransferase (NT) domain of family X DNA Polymerases Back     alignment and domain information
>PRK02098 phosphoribosyl-dephospho-CoA transferase; Provisional Back     alignment and domain information
>PF10421 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus ; InterPro: IPR018952 This is the largely alpha-helical, C-terminal half of 2'-5'-oligoadenylate synthetase 1, being described as domain 2 of the enzyme and homologous to a tandem ubiquitin repeat Back     alignment and domain information
>TIGR03135 malonate_mdcG holo-ACP synthase, malonate decarboxylase-specific Back     alignment and domain information
>PF14792 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1RZT_A 3PML_A 2PFN_A 3HX0_K 3HWT_A 2GWS_E 2BCQ_A 3UPQ_A 2BCS_A 3UQ2_A Back     alignment and domain information
>cd05401 NT_GlnE_GlnD_like Nucleotidyltransferase (NT) domain of Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), and similar proteins Back     alignment and domain information
>COG1665 Predicted nucleotidyltransferase [General function prediction only] Back     alignment and domain information
>PF03445 DUF294: Putative nucleotidyltransferase DUF294; InterPro: IPR005105 This domain is found associated with an N-terminal cyclic nucleotide-binding domain (IPR000595 from INTERPRO) and two CBS domains (IPR000644 from INTERPRO) Back     alignment and domain information
>KOG3793 consensus Transcription factor NFAT, subunit NF45 [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query636
1q79_A514 Crystal Structure Of Mammalian Poly(A) Polymerase L 6e-99
1q78_A514 Crystal Structure Of Poly(A) Polymerase In Complex 1e-98
1f5a_A513 Crystal Structure Of Mammalian Poly(A) Polymerase L 2e-94
2hhp_A530 Structure Of Yeast Poly(A) Polymerase In A Closed C 2e-87
1fa0_A537 Structure Of Yeast Poly(A) Polymerase Bound To Mang 2e-87
2o1p_A546 Structure Of Yeast Poly(A) Polymerase In A Somewhat 3e-87
2q66_A525 Structure Of Yeast Poly(A) Polymerase With Atp And 2e-86
>pdb|1Q79|A Chain A, Crystal Structure Of Mammalian Poly(A) Polymerase Length = 514 Back     alignment and structure 
Iteration: 1

 Score =  358 bits (918), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 196/440 (44%), Positives = 273/440 (62%), Gaps = 9/440 (2%)
Query: 4   ISTSAPTVLDVISTKELEKILVDEKLFASEEESLGRVEVLGRLDGIVKDWIKRVTMDKGI 63
           IS +AP   D + T++L + L    +F  EEE   R+ +LG+L+ +VK+WI+ ++  K +
Sbjct: 26  ISLAAPKETDXLLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREISESKNL 85
Query: 64  SDEEQIQEANAKLFTFGSYRLGVAGPSTDIDALCVGPCYATRHDDFFGKLFRMLQETPLV 123
             +  I+    K+FTFGSYRLGV     DIDALCV P +  R  DFF   +  L+    V
Sbjct: 86  P-QSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDR-SDFFTSFYDKLKLQEEV 143
Query: 124 EDLTPVPDARVPVIKFKFNGVSVDLLYAQLQFSVIPEDLDSLQDSLLHNLDEQTVLSLNG 183
           +DL  V +A VPVIK  F+G+ +D+L+A+L    IPEDLD   DSLL NLD + + SLNG
Sbjct: 144 KDLRAVEEAFVPVIKLXFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRXIRSLNG 203
Query: 184 CRVTDRILSLVPNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQLYPNA 243
           CRVTD IL LVPNI NFR TLR ++ WAKR  IYSN +GFLGG++WA+LVAR CQLYPNA
Sbjct: 204 CRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNA 263
Query: 244 LPNVLVSRFFKIFAHWKWPNPVMLCPIQYQAMPHHVWDPRSNQRDRKHLMPIITPSYPCT 303
           + + LV +FF +F+ W+WPNPV+L   +   +   VWDPR N  DR HLMPIITP+YP  
Sbjct: 264 IASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQ 323
Query: 304 NSSYNVSSTTLRIMQEEFQRAKELCEEIEAGKRTWITLFEPYHFFGSFKNYLQIHIAAKN 363
           NS+YNVS +T  +M EEF++   + +EI   K  W  LFE  +FF  +K+Y+ +  +A  
Sbjct: 324 NSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPT 383
Query: 364 AGDFRQWKGWVESRLRQLIHMIERDMGGVLQCRLYPGDF---SENSVKSSSQCHYFMGLG 420
                +W G VES++R L+  +E++    L   + P  F    EN  K   +  + +GL 
Sbjct: 384 EKQRLEWVGLVESKIRILVGSLEKNEFITL-AHVNPQSFPAPKENPDKEEFRTMWVIGLV 442
Query: 421 RKQGVSPQDGEKFDMRLTVE 440
            K+    ++ E   + LT +
Sbjct: 443 FKKT---ENSENLSVDLTYD 459
>pdb|1Q78|A Chain A, Crystal Structure Of Poly(A) Polymerase In Complex With 3'- Datp And Magnesium Chloride Length = 514 Back     alignment and structure
>pdb|1F5A|A Chain A, Crystal Structure Of Mammalian Poly(A) Polymerase Length = 513 Back     alignment and structure
>pdb|2HHP|A Chain A, Structure Of Yeast Poly(A) Polymerase In A Closed Conformation Length = 530 Back     alignment and structure
>pdb|1FA0|A Chain A, Structure Of Yeast Poly(A) Polymerase Bound To Manganate And 3'-Datp Length = 537 Back     alignment and structure
>pdb|2O1P|A Chain A, Structure Of Yeast Poly(A) Polymerase In A Somewhat Closed State Length = 546 Back     alignment and structure
>pdb|2Q66|A Chain A, Structure Of Yeast Poly(A) Polymerase With Atp And Oligo(A) Length = 525 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query636
1q79_A514 Poly(A) polymerase alpha; mRNA processing, nucleot 1e-169
2hhp_A530 Poly(A) polymerase; template-independent RNA polym 1e-156
3nyb_A323 Poly(A) RNA polymerase protein 2; polya RNA polyme 9e-19
4e8f_A405 Poly(A) RNA polymerase protein CID1; beta polymera 1e-11
4ep7_A340 Poly(A) RNA polymerase protein CID1; poly(U) polym 4e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
2b4v_A468 RNA editing complex protein MP57; tbret2, TBMP57, 1e-09
2ikf_A353 RNA uridylyl transferase; tutase, nucleotidyltrans 2e-08
3pq1_A464 Poly(A) RNA polymerase; nucleotidyl transferase, R 2e-07
3hj4_A384 Minor editosome-associated tutase; nucleotidyltran 4e-07
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A* Length = 530 Back     alignment and structure
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Length = 323 Back     alignment and structure
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A Length = 405 Back     alignment and structure
>4ep7_A Poly(A) RNA polymerase protein CID1; poly(U) polymerase, UTP binding, transferase; HET: UTP; 2.28A {Schizosaccharomyces pombe} Length = 340 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A* Length = 468 Back     alignment and structure
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A* Length = 353 Back     alignment and structure
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens} Length = 464 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query636
1q79_A514 Poly(A) polymerase alpha; mRNA processing, nucleot 100.0
2hhp_A530 Poly(A) polymerase; template-independent RNA polym 100.0
4fh3_A349 Poly(A) RNA polymerase protein CID1; nucleotidyltr 100.0
2ikf_A353 RNA uridylyl transferase; tutase, nucleotidyltrans 100.0
4e8f_A405 Poly(A) RNA polymerase protein CID1; beta polymera 100.0
3nyb_A323 Poly(A) RNA polymerase protein 2; polya RNA polyme 100.0
2b4v_A468 RNA editing complex protein MP57; tbret2, TBMP57, 100.0
3hj4_A384 Minor editosome-associated tutase; nucleotidyltran 100.0
3pq1_A464 Poly(A) RNA polymerase; nucleotidyl transferase, R 100.0
1r89_A437 TRNA nucleotidyltransferase; CCA adding enzyme, in 99.31
1px5_A349 2'-5'-oligoadenylate synthetase 1; 5-stranded anti 99.07
4at7_A364 Interleukin enhancer-binding factor 2; transcripti 97.84
1no5_A114 Hypothetical protein HI0073; structural genomics, 97.23
4at7_B383 NF90, interleukin enhancer-binding factor 3; trans 97.23
2rff_A111 Putative nucleotidyltransferase; NP_343093.1, nucl 97.09
1wot_A98 Putative minimal nucleotidyltransferase; alpha and 96.85
1ylq_A96 Putative nucleotidyltransferase, hypothetical Pro 96.72
4ebj_A272 Aminoglycoside nucleotidyltransferase; structural 94.95
2fmp_A335 DNA polymerase beta; nucleotidyl transferase, tran 94.04
1kny_A253 Kntase, kanamycin nucleotidyltransferase; antibiot 93.98
2bcq_A335 DNA polymerase lambda; misalignment, extrahelical, 93.69
2ihm_A360 POL MU, DNA polymerase MU; helix-turn-helix, trans 91.38
1jaj_A174 DNA polymerase beta-like protein; CIS peptide, vir 90.85
3jz0_A287 Lincosamide nucleotidyltransferase; alpha-beta str 88.64
1jms_A381 Terminal deoxynucleotidyltransferase; polymerase; 87.56
3b0x_A575 DNA polymerase beta family (X family); structural 85.88
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A* Back     alignment and structure
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A* Back     alignment and structure
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A* Back     alignment and structure
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A Back     alignment and structure
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A* Back     alignment and structure
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens} Back     alignment and structure
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ... Back     alignment and structure
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6 Back     alignment and structure
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A* Back     alignment and structure
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5 Back     alignment and structure
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2} Back     alignment and structure
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5 Back     alignment and structure
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5 Back     alignment and structure
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A* Back     alignment and structure
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ... Back     alignment and structure
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A Back     alignment and structure
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ... Back     alignment and structure
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus} Back     alignment and structure
>1jaj_A DNA polymerase beta-like protein; CIS peptide, viral protein; HET: DNA; NMR {African swine fever virus} SCOP: d.218.1.2 PDB: 1jqr_A* Back     alignment and structure
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A* Back     alignment and structure
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A* Back     alignment and structure
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 636
d2q66a1150 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, mid 5e-80
d1q79a1150 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, mid 3e-79
d1q79a2196 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-te 9e-73
d2q66a2197 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-ter 4e-68
d1q79a3134 d.58.16.1 (A:365-498) Poly(A) polymerase, PAP, C-t 7e-31
d2q66a3178 d.58.16.1 (A:352-529) Poly(A) polymerase, PAP, C-t 1e-28
d2b4va1183 a.160.1.4 (A:289-471) RNA editing terminal uridyl 4e-22
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 150 Back     information, alignment and structure

class: All alpha proteins
fold: PAP/OAS1 substrate-binding domain
superfamily: PAP/OAS1 substrate-binding domain
family: Poly(A) polymerase, PAP, middle domain
domain: Poly(A) polymerase, PAP, middle domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  247 bits (633), Expect = 5e-80
 Identities = 65/149 (43%), Positives = 101/149 (67%)

Query: 195 PNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQLYPNALPNVLVSRFFK 254
           P    FR  LR ++ WA+RR +Y+N  GF GG+ WA+LVAR+CQLYPNA   V+++RFF 
Sbjct: 1   PKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVARICQLYPNACSAVILNRFFI 60

Query: 255 IFAHWKWPNPVMLCPIQYQAMPHHVWDPRSNQRDRKHLMPIITPSYPCTNSSYNVSSTTL 314
           I + W WP PV+L PI+   +   VW+P+   +DR H MP+ITP+YP   +++N++ +T 
Sbjct: 61  ILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITESTK 120

Query: 315 RIMQEEFQRAKELCEEIEAGKRTWITLFE 343
           +++ +EF R  ++  +I + K++W  LFE
Sbjct: 121 KVILQEFVRGVQITNDIFSNKKSWANLFE 149
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]} Length = 150 Back     information, alignment and structure
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 196 Back     information, alignment and structure
>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 197 Back     information, alignment and structure
>d1q79a3 d.58.16.1 (A:365-498) Poly(A) polymerase, PAP, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 134 Back     information, alignment and structure
>d2q66a3 d.58.16.1 (A:352-529) Poly(A) polymerase, PAP, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 178 Back     information, alignment and structure
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Length = 183 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query636
d1q79a1150 Poly(A) polymerase, PAP, middle domain {Cow (Bos t 100.0
d2q66a1150 Poly(A) polymerase, PAP, middle domain {Baker's ye 100.0
d1q79a2196 Poly(A) polymerase, PAP, N-terminal domain {Cow (B 100.0
d2q66a2197 Poly(A) polymerase, PAP, N-terminal domain {Baker' 100.0
d2q66a3178 Poly(A) polymerase, PAP, C-terminal domain {Baker' 99.96
d1q79a3134 Poly(A) polymerase, PAP, C-terminal domain {Cow (B 99.96
d2b4va1183 RNA editing terminal uridyl transferase 2, TUTase 99.89
d1r89a2142 tRNA nucleotidyltransferase, N-terminal domain {Ar 98.28
d1no5a_100 Hypothetical protein HI0073 {Haemophilus influenza 98.05
d2b4va2259 RNA editing terminal uridyl transferase 2, TUTase 97.77
d1ylqa190 Putative nucleotidyltransferase AF0614 {Archaeon A 97.56
d1wota_98 Unnamed putative nucleotidyltransferase {Thermus t 96.82
d1r89a1115 tRNA nucleotidyltransferase, second domain {Archae 96.73
d2bcqa3190 DNA polymerase lambda {Human (Homo sapiens) [TaxId 96.28
d1knya2125 Kanamycin nucleotidyltransferase (KNTase), N-termi 95.79
d2fmpa3187 DNA polymerase beta, catalytic (31 kD) fragment {H 95.76
d1jmsa4208 Terminal deoxynucleotidyl transferase {Mouse (Mus 94.53
d1px5a2200 2'-5'-oligoadenylate synthetase 1, OAS1, N-termina 92.61
d1px5a1146 2'-5'-oligoadenylate synthetase 1, OAS1, second do 91.33
d1jqra_174 DNA polymerase X {African swine fever virus [TaxId 83.28
d2pbea2135 Aminoglycoside 6-adenylyltransferase AadK {Bacillu 82.08
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: All alpha proteins
fold: PAP/OAS1 substrate-binding domain
superfamily: PAP/OAS1 substrate-binding domain
family: Poly(A) polymerase, PAP, middle domain
domain: Poly(A) polymerase, PAP, middle domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.1e-53  Score=400.69  Aligned_cols=150  Identities=55%  Similarity=1.044  Sum_probs=147.2

Q ss_pred             CCchhhHHHHHHHHHHHHHcCCCCCCCcccchHHHHHHHHHHHhhCCCCChhhHHHHHHHHhccCCCCCceeecccCCCC
Q 006658          195 PNIRNFRSTLRCLRFWAKRRGIYSNAMGFLGGINWALLVARVCQLYPNALPNVLVSRFFKIFAHWKWPNPVMLCPIQYQA  274 (636)
Q Consensus       195 P~~~~FR~llr~IK~WAK~RgIysn~~G~LGGiswaiLVa~vcQl~Pn~s~~~LL~~FF~~Ys~wdW~~pV~l~~~~~g~  274 (636)
                      ||.++||.+||+||+|||+||||||++||||||+||||||++||+|||+++++||.+||.+|++|+|++||+++++.++.
T Consensus         1 Pn~~~Fr~~lR~IKlWAk~RGIYsn~~GflGGI~waILvArvCql~Pna~~~~ll~~FF~~ys~W~Wp~PV~l~~~~~~~   80 (150)
T d1q79a1           1 PNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECN   80 (150)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTTCBCTTTTSBCHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHSCCTTSCBCSSCCCCCS
T ss_pred             CCHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCCCCCeeccCccccc
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccCCCCCccCCCccceeeCCCCCCCCcccccChhhHHHHHHHHHHHHHHHHHHHcCCCCccccccc
Q 006658          275 MPHHVWDPRSNQRDRKHLMPIITPSYPCTNSSYNVSSTTLRIMQEEFQRAKELCEEIEAGKRTWITLFEP  344 (636)
Q Consensus       275 l~~~~W~p~~~~~Dr~~~MpIiTP~~P~~Nsa~nVs~stl~~I~~Ef~RA~~il~~i~~~~~~W~~Lf~~  344 (636)
                      +++++|+|+.+++|+.|+||||||+||++|+|+|||.+|+++|++||+||.+|+++++.++.+|++|||.
T Consensus        81 ~~~~~w~pr~~~~dr~~lMpIiTPayP~~Nst~nvt~st~~~i~~E~~ra~~i~~~i~~~~~~W~~Lfe~  150 (150)
T d1q79a1          81 LNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEA  150 (150)
T ss_dssp             SCCCCCCTTTCGGGGGCSSCBBCSSSSCCBTTTTCCHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHTCC
T ss_pred             CCCCCCCCCCCCcccccccccccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999973
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2q66a3 d.58.16.1 (A:352-529) Poly(A) polymerase, PAP, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q79a3 d.58.16.1 (A:365-498) Poly(A) polymerase, PAP, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1r89a2 d.218.1.7 (A:1-142) tRNA nucleotidyltransferase, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1no5a_ d.218.1.5 (A:) Hypothetical protein HI0073 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2b4va2 d.218.1.10 (A:30-288) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1ylqa1 d.218.1.5 (A:1-90) Putative nucleotidyltransferase AF0614 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1wota_ d.218.1.5 (A:) Unnamed putative nucleotidyltransferase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1r89a1 a.160.1.3 (A:143-257) tRNA nucleotidyltransferase, second domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2bcqa3 d.218.1.2 (A:386-575) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1knya2 d.218.1.1 (A:1-125) Kanamycin nucleotidyltransferase (KNTase), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2fmpa3 d.218.1.2 (A:149-335) DNA polymerase beta, catalytic (31 kD) fragment {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jmsa4 d.218.1.2 (A:303-510) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1px5a2 d.218.1.6 (A:1-200) 2'-5'-oligoadenylate synthetase 1, OAS1, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1px5a1 a.160.1.2 (A:201-346) 2'-5'-oligoadenylate synthetase 1, OAS1, second domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1jqra_ d.218.1.2 (A:) DNA polymerase X {African swine fever virus [TaxId: 10497]} Back     information, alignment and structure
>d2pbea2 d.218.1.13 (A:1-135) Aminoglycoside 6-adenylyltransferase AadK {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure