Citrus Sinensis ID: 006672
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 636 | 2.2.26 [Sep-21-2011] | |||||||
| Q9MAT2 | 665 | Pentatricopeptide repeat- | yes | no | 0.951 | 0.909 | 0.5 | 0.0 | |
| Q9LN01 | 741 | Pentatricopeptide repeat- | no | no | 0.962 | 0.825 | 0.359 | 1e-117 | |
| Q9FG16 | 622 | Pentatricopeptide repeat- | no | no | 0.891 | 0.911 | 0.330 | 1e-109 | |
| Q9LTV8 | 694 | Pentatricopeptide repeat- | no | no | 0.949 | 0.870 | 0.333 | 1e-109 | |
| O82380 | 738 | Pentatricopeptide repeat- | no | no | 0.973 | 0.838 | 0.318 | 1e-108 | |
| Q9SR82 | 685 | Putative pentatricopeptid | no | no | 0.955 | 0.887 | 0.329 | 1e-107 | |
| Q9SZT8 | 632 | Pentatricopeptide repeat- | no | no | 0.882 | 0.887 | 0.346 | 1e-107 | |
| Q9CA54 | 643 | Pentatricopeptide repeat- | no | no | 0.943 | 0.933 | 0.351 | 1e-106 | |
| Q9FI80 | 646 | Pentatricopeptide repeat- | no | no | 0.893 | 0.879 | 0.354 | 1e-105 | |
| Q9CAY1 | 623 | Putative pentatricopeptid | no | no | 0.836 | 0.853 | 0.342 | 4e-99 |
| >sp|Q9MAT2|PPR10_ARATH Pentatricopeptide repeat-containing protein At1g04840 OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/638 (50%), Positives = 440/638 (68%), Gaps = 33/638 (5%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
E+H ISLIH+ T LR +HAQI+ + SSR+ QL+S +SL KS DY+LSIF +
Sbjct: 29 ESHFISLIHACKDTASLRHVHAQILRRGVL-SSRVAAQLVSCSSLLKSPDYSLSIFRNSE 87
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
+N + N LIRGL EN+ F+S + HF+ MLRL V+P+RLT+PFV KS + L LGR
Sbjct: 88 ERNPFVLNALIRGLTENARFESSVRHFILMLRLGVKPDRLTFPFVLKSNSKLGFRWLGRA 147
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
LH +K+ V+ D+FVR+ L DMY + G+ + AF+VF+E+P++ K ES+L+WNVLING
Sbjct: 148 LHAATLKNFVDCDSFVRLSLVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGYC 207
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
+ + A LF MP++N SW +LI G++ G+L +A +LFE MPEK VVSWT +ING
Sbjct: 208 RAKDMHMATTLFRSMPERNSGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVSWTTLING 267
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
FSQ G+ E A++ +F+ML+ G++ N++T+ + LSAC+K GAL +G+R+H YI N L
Sbjct: 268 FSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLD 327
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
AIGTALVDMYAKCG ++ A+ VF KD+L+WTAMI G A+HGR+ QAIQ F++MMY
Sbjct: 328 RAIGTALVDMYAKCGELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMY 387
Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDS 450
SG +PD VFLA+LTAC S +V L LNFFDSMR DY IEP++KH+ +VV+LL R G+ +
Sbjct: 388 SGEKPDEVVFLAVLTACLNSSEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDLLGRAGKLN 447
Query: 451 Q----------------------------GYQNSQNSFTKLLQLKPKHPSSYVLLSNIYA 482
+ GY+ +++ LL+L P+ SY+ L +A
Sbjct: 448 EAHELVENMPINPDLTTWAALYRACKAHKGYRRAESVSQNLLELDPELCGSYIFLDKTHA 507
Query: 483 AEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMA 540
++G +DV + R +Q+R ++ GWSYIE++G +++F AG HKL +EI KL++I++
Sbjct: 508 SKGNIQDVEKRRLSLQKRIKERSLGWSYIELDGQLNKFSAGDYSHKLTQEIGLKLDEIIS 567
Query: 541 GAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGD 599
A ++GY PG +W +H+I+EE KE G HSEKLAL G ++T PGTTI+I+K L ICGD
Sbjct: 568 LAIQKGYNPGADWSIHDIEEEEKENVTGIHSEKLALTLGFLRTAPGTTIRIIKNLRICGD 627
Query: 600 CHSLMKYASKISQREIVLRDTR-FHYFKDGTCSCRDYW 636
CHSLMKY SKISQR+I+LRD R FH+FKDG CSC DYW
Sbjct: 628 CHSLMKYVSKISQRDILLRDARQFHHFKDGRCSCGDYW 665
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 424 bits (1090), Expect = e-117, Method: Compositional matrix adjust.
Identities = 260/723 (35%), Positives = 384/723 (53%), Gaps = 111/723 (15%)
Query: 21 SSHKPSNNITETHIISLIHSSNSTKQLRQIHAQII---LHNL-FASSRITTQLISSASLH 76
SS P ++I +SL+H+ + + LR IHAQ+I LHN +A S++ I S
Sbjct: 23 SSDPPYDSIRNHPSLSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHF- 81
Query: 77 KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136
+ + YA+S+F NL I+N + RG A +S S + +V M+ L + PN T+PFV
Sbjct: 82 EGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVL 141
Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN-- 194
KS A G+ +H ++K G + D +V L MYVQ G+ A KVFD++P ++
Sbjct: 142 KSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVV 201
Query: 195 -------------------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN 229
+ V+ WN +I+G ++ G ++A+ELF M K N
Sbjct: 202 SYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTN 261
Query: 230 VAS--------------------------WV-------------SLIDGFMRKGDLKKAG 250
V W+ +LID + + G+L+ A
Sbjct: 262 VRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETAC 321
Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
LFE++P K V+SW +I G++ ++AL +F +ML +G ND T++S L ACA +G
Sbjct: 322 GLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLG 381
Query: 311 ALEAGVRVHNYISCNDFGLKG-----AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
A++ G +H YI D LKG ++ T+L+DMYAKCG+IEAA VF K L +W
Sbjct: 382 AIDIGRWIHVYI---DKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSW 438
Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
AMI+G A+HGR + + F +M G +PD F+ +L+AC +SG + L + F +M
Sbjct: 439 NAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQ 498
Query: 426 DYFIEPSVKHHTVVVNLLSRVGQ---------------------------DSQGYQNSQN 458
DY + P ++H+ +++LL G G
Sbjct: 499 DYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGE 558
Query: 459 SFTK-LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHV 517
SF + L++++P++P SYVLLSNIYA+ GRW +VA+ R L+ + +KK PG S IE++ V
Sbjct: 559 SFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVV 618
Query: 518 HRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLA 574
H F G H +EI+ LE++ + G++P T VL ++EE KE AL HSEKLA
Sbjct: 619 HEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLA 678
Query: 575 LAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCR 633
+AFGLI T PGT + IVK L +C +CH K SKI +REI+ RD TRFH+F+DG CSC
Sbjct: 679 IAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCN 738
Query: 634 DYW 636
DYW
Sbjct: 739 DYW 741
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 397 bits (1020), Expect = e-109, Method: Compositional matrix adjust.
Identities = 212/642 (33%), Positives = 357/642 (55%), Gaps = 75/642 (11%)
Query: 35 ISLIHSSNSTKQLRQIHAQII----LHNLFASSRITTQLISSASLHKSID---YALSIFD 87
++L+ S +S L+ IH ++ + ++F +SR+ + ++ +K + YA IF
Sbjct: 16 LALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFS 75
Query: 88 HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
NL +FN+LIR + + + ML+ + P+ +T+PF+ K+ + + + +
Sbjct: 76 QIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLV 135
Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
G H IV+ G + D +V L MY
Sbjct: 136 GEQTHSQIVRFGFQNDVYVENSLVHMY--------------------------------- 162
Query: 208 GCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
+ G++ A +FG M ++V SW S++ G+ + G ++ A E+F++MP + + +W+ M
Sbjct: 163 --ANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIM 220
Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
ING+++N EKA+ +F M GV AN+ +VS +S+CA +GALE G R + Y+ +
Sbjct: 221 INGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHM 280
Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
+ +GTALVDM+ +CG+IE A VF E D L+W+++I GLA+HG +A+ YF +
Sbjct: 281 TVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQ 340
Query: 388 MMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
M+ G P F A+L+AC + G V+ L +++M+ D+ IEP ++H+ +V++L R G
Sbjct: 341 MISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAG 400
Query: 448 QDSQG-------------------------YQNSQNS---FTKLLQLKPKHPSSYVLLSN 479
+ ++ Y+N++ + L+++KP+H YVLLSN
Sbjct: 401 KLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSN 460
Query: 480 IYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG---HKLAKEIHSKLE 536
IYA G+W + +R +M+ + +KK PGWS IE++G +++F G H +I K E
Sbjct: 461 IYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWE 520
Query: 537 DIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLT 595
+I+ R GY T ++ +EEKE ++ HSEKLA+A+G+++T PGTTI+IVK L
Sbjct: 521 EILGKIRLIGYKGNTGDAFFDVDEEEKESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLR 580
Query: 596 ICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
+C DCH++ K S++ RE+++RD RFH+F++G CSCRDYW
Sbjct: 581 VCEDCHTVTKLISEVYGRELIVRDRNRFHHFRNGVCSCRDYW 622
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 394 bits (1013), Expect = e-109, Method: Compositional matrix adjust.
Identities = 226/678 (33%), Positives = 362/678 (53%), Gaps = 74/678 (10%)
Query: 30 TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
+++ SLI S+ QL+QIHA++++ L S + T+LI ++S I +A +FD
Sbjct: 20 SDSFYASLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDL 79
Query: 90 TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
+ +N +IRG + N+HFQ + + M V P+ T+P + K+ + LS L +GR
Sbjct: 80 PRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGR 139
Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
+H + + G + D FV+ L +Y + + A VF+ P ++ ++ W +++
Sbjct: 140 FVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERT--IVSWTAIVSAY 197
Query: 210 SKIGYLRKAVELFGMMPKKNV-ASWVSLI---DGFMRKGDLK------------------ 247
++ G +A+E+F M K +V WV+L+ + F DLK
Sbjct: 198 AQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEP 257
Query: 248 -----------KAGE------LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290
K G+ LF++M ++ W AMI+G+++NG A +A+ MF +M++
Sbjct: 258 DLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINK 317
Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
VR + ++ SA+SACA+VG+LE ++ Y+ +D+ I +AL+DM+AKCG++E A
Sbjct: 318 DVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGA 377
Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
LVF T ++D++ W+AMI G +HGR +AI ++ M G P+ FL +L AC +S
Sbjct: 378 RLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHS 437
Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN--------------- 455
G V+ FF+ M D+ I P +H+ V++LL R G Q Y+
Sbjct: 438 GMVREGWWFFNRMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGA 496
Query: 456 -------------SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502
+ + +L + P + YV LSN+YAA W VA VR M+ + +
Sbjct: 497 LLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGL 556
Query: 503 KKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK- 559
KD G S++EV G + F G H +EI ++E I + +E G++ + LH++
Sbjct: 557 NKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLND 616
Query: 560 EEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD 619
EE EE L HSE++A+A+GLI T GT ++I K L C +CH+ K SK+ REIV+RD
Sbjct: 617 EEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRD 676
Query: 620 T-RFHYFKDGTCSCRDYW 636
T RFH+FKDG CSC DYW
Sbjct: 677 TNRFHHFKDGVCSCGDYW 694
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 394 bits (1011), Expect = e-108, Method: Compositional matrix adjust.
Identities = 230/722 (31%), Positives = 378/722 (52%), Gaps = 103/722 (14%)
Query: 18 NIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK 77
N + ++P+ N + ISLI S +QL+Q H +I F+ ++L + A+L
Sbjct: 17 NFSNPNQPTTNNERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSS 76
Query: 78 --SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPF 134
S++YA +FD N +N LIR A I F+ M+ S PN+ T+PF
Sbjct: 77 FASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPF 136
Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDA----------------------FVRVHLAD 172
+ K+ A +S LSLG+ LH + VKS V D F + D
Sbjct: 137 LIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKD 196
Query: 173 M---------YVQLGKTRGAFKVFDETP-------------------------------- 191
+ +VQ G A ++F +
Sbjct: 197 VVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCS 256
Query: 192 --EKNK-SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKK 248
E+N+ + ++ L N +++ +K G + A LF M +K+ +W +++DG+ D +
Sbjct: 257 YIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEA 316
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM-LDAGVRANDFTVVSALSACA 307
A E+ MP+K +V+W A+I+ + QNG+ +AL +F ++ L ++ N T+VS LSACA
Sbjct: 317 AREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACA 376
Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
+VGALE G +H+YI + + + +AL+ MY+KCG++E + VF +++D+ W+A
Sbjct: 377 QVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSA 436
Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427
MI GLA+HG +A+ F KM + +P+G F + AC ++G V A + F M +Y
Sbjct: 437 MIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNY 496
Query: 428 FIEPSVKHHTVVVNLLSRVGQDSQGYQN----------------------------SQNS 459
I P KH+ +V++L R G + + ++ +
Sbjct: 497 GIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMA 556
Query: 460 FTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHR 519
T+LL+L+P++ ++VLLSNIYA G+W++V+ +R M+ +KK+PG S IE++G +H
Sbjct: 557 CTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHE 616
Query: 520 FEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE--KEEALGCHSEKLAL 575
F +G H ++++++ KL ++M + GY P VL I+EE KE++L HSEKLA+
Sbjct: 617 FLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAI 676
Query: 576 AFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRD 634
+GLI T I+++K L +CGDCHS+ K S++ REI++RD RFH+F++G CSC D
Sbjct: 677 CYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCND 736
Query: 635 YW 636
+W
Sbjct: 737 FW 738
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 390 bits (1001), Expect = e-107, Method: Compositional matrix adjust.
Identities = 225/683 (32%), Positives = 354/683 (51%), Gaps = 75/683 (10%)
Query: 25 PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
PS I +LI + + L+QIH +I H+L + + L+ + Y+
Sbjct: 7 PSATSKVQQIKTLISVACTVNHLKQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYL 66
Query: 85 IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
+F H N+ ++N LI G N F + F+ + + + + T+P V K+ S
Sbjct: 67 LFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASS 126
Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
LG LH L+VK G +D L +Y G+ A K+FDE P++ SV+ W
Sbjct: 127 RKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDR----SVVTWTA 182
Query: 205 LINGCSKIGYLRKAVELFGMMPKKNV----------------------ASWV-------- 234
L +G + G R+A++LF M + V W+
Sbjct: 183 LFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEME 242
Query: 235 ---------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
+L++ + + G ++KA +F+ M EK +V+W+ MI G++ N ++ + +F
Sbjct: 243 MQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFL 302
Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
QML ++ + F++V LS+CA +GAL+ G + I ++F + AL+DMYAKCG
Sbjct: 303 QMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCG 362
Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
+ VF E KEKD++ A I GLA +G + + F + G PDG+ FL +L
Sbjct: 363 AMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLC 422
Query: 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY------------ 453
C ++G ++ L FF+++ Y ++ +V+H+ +V+L R G Y
Sbjct: 423 GCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNA 482
Query: 454 ----------------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLM 497
Q ++ +L+ L+P + +YV LSNIY+ GRW + A VR +M
Sbjct: 483 IVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMM 542
Query: 498 QRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVL 555
++ +KK PG+S+IE+ G VH F A H L+ +I++KLED+ R G++P TE+V
Sbjct: 543 NKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVF 602
Query: 556 HNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQRE 614
++ +EEKE LG HSEKLA+A GLI T G I++VK L +CGDCH +MK SKI++RE
Sbjct: 603 FDVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRRE 662
Query: 615 IVLRD-TRFHYFKDGTCSCRDYW 636
IV+RD RFH F +G+CSC DYW
Sbjct: 663 IVVRDNNRFHCFTNGSCSCNDYW 685
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 388 bits (996), Expect = e-107, Method: Compositional matrix adjust.
Identities = 221/637 (34%), Positives = 347/637 (54%), Gaps = 76/637 (11%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNLFASSR---ITTQLISSASLHKSIDYALSIFDHFTPKN 93
LI S S ++ QIHA I+ HNL R + +L + + H I ++L++F +
Sbjct: 35 LIDKSQSVDEVLQIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPD 94
Query: 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
L +F I + N +V +L + PN T+ + KS ++ S G+ +H
Sbjct: 95 LFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCSTKS----GKLIHT 150
Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
++K G+ D +V L D+Y + G A KVFD
Sbjct: 151 HVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDR------------------------ 186
Query: 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
MP++++ S ++I + ++G+++ A LF+ M E+ +VSW MI+G++Q
Sbjct: 187 -----------MPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQ 235
Query: 274 NGEAEKALAMFFQMLDAG-VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
+G AL +F ++L G + ++ TVV+ALSAC+++GALE G +H ++ + L
Sbjct: 236 HGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVK 295
Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM-YS 391
+ T L+DMY+KCG++E A LVF +T KD++ W AMI G A+HG + A++ F +M +
Sbjct: 296 VCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGIT 355
Query: 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQ 451
G +P F+ L AC ++G V + F+SM +Y I+P ++H+ +V+LL R GQ +
Sbjct: 356 GLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKR 415
Query: 452 GYQNSQNSFTK----------------------------LLQLKPKHPSSYVLLSNIYAA 483
Y+ +N L+ L K+ YVLLSNIYA+
Sbjct: 416 AYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYAS 475
Query: 484 EGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAG 541
G ++ VA+VR LM+ + I K+PG S IE+ VH F AG H +KEI++ L I
Sbjct: 476 VGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISER 535
Query: 542 AREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDC 600
+ GY+P T VL +++E EKE++L HSE+LA+A+GLI T PG+ +KI K L +C DC
Sbjct: 536 IKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDC 595
Query: 601 HSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
H++ K SKI+ R+IV+RD RFH+F DG+CSC D+W
Sbjct: 596 HTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 386 bits (991), Expect = e-106, Method: Compositional matrix adjust.
Identities = 225/641 (35%), Positives = 357/641 (55%), Gaps = 41/641 (6%)
Query: 33 HIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIFDHFT 90
H +SL++S + + L QIH I + + S T +LI + S+ ++ YA + F
Sbjct: 7 HCLSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFP 66
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSLLSLGR 149
+ +FN L+RG +E+ + ++ FV M+R V P+ ++ FV K+V + L G
Sbjct: 67 EPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGF 126
Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
+HC +K G+E FV L MY G A KVFDE + N ++ WN +I C
Sbjct: 127 QMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPN----LVAWNAVITAC 182
Query: 210 SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
+ + A E+F M +N SW ++ G+++ G+L+ A +F +MP + VSW+ MI
Sbjct: 183 FRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIV 242
Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
G + NG ++ F ++ AG+ N+ ++ LSAC++ G+ E G +H ++ +
Sbjct: 243 GIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSW 302
Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKD-LLTWTAMIWGLAIHGRYEQAIQYFKKM 388
++ AL+DMY++CGN+ A LVF +EK +++WT+MI GLA+HG+ E+A++ F +M
Sbjct: 303 IVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEM 362
Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
G PDG F+++L AC ++G ++ ++F M+ Y IEP ++H+ +V+L R G+
Sbjct: 363 TAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGK 422
Query: 449 DSQGY----------------------------QNSQNSFTKLLQLKPKHPSSYVLLSNI 480
+ Y + ++ +L +L P + VLLSN
Sbjct: 423 LQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNA 482
Query: 481 YAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHK--LAKEIHSKLEDI 538
YA G+WKDVA +R M + IKK WS +EV +++F AG K + E H KL++I
Sbjct: 483 YATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEI 542
Query: 539 MAGAR-EQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTI 596
+ + E GY P L+++ +EEKE+ + HSEKLALAF L + + G I+IVK L I
Sbjct: 543 ILRLKDEAGYTPEVASALYDVEEEEKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRI 602
Query: 597 CGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
C DCH++MK SK+ EI++RD RFH FKDG+CSCRDYW
Sbjct: 603 CRDCHAVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 643
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 383 bits (983), Expect = e-105, Method: Compositional matrix adjust.
Identities = 230/648 (35%), Positives = 343/648 (52%), Gaps = 80/648 (12%)
Query: 38 IHSSNSTKQLRQIHAQII----LHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
I++ + + L QIHA I + + A++ I +S H+ +DYA IF+ +N
Sbjct: 30 INNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRN 89
Query: 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLS---VRPNRLTYPFVSKSVASLSLLSLGRG 150
+N +IRG +E+ ++ I+ +F +S V PNR T+P V K+ A + G+
Sbjct: 90 CFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQ 149
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE----------TPEKNKSESVL 200
+H L +K G D FV +L MYV G + A +F + T + + ++
Sbjct: 150 IHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIV 209
Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
LWNV+I DG+MR GD K A LF++M ++
Sbjct: 210 LWNVMI-------------------------------DGYMRLGDCKAARMLFDKMRQRS 238
Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
VVSW MI+G+S NG + A+ +F +M +R N T+VS L A +++G+LE G +H
Sbjct: 239 VVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHL 298
Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
Y + + +G+AL+DMY+KCG IE A VF ++++TW+AMI G AIHG+
Sbjct: 299 YAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGD 358
Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
AI F KM +G P ++ +LTAC + G V+ +F M +EP ++H+ +V
Sbjct: 359 AIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMV 418
Query: 441 NLLSRVGQDSQGYQNSQNSFTK----------------------------LLQLKPKHPS 472
+LL R G + + N K L+ + P
Sbjct: 419 DLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSG 478
Query: 473 SYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF--EAGGHKLAKE 530
+YV LSN+YA++G W +V+ +R M+ + I+KDPG S I+++G +H F E H AKE
Sbjct: 479 AYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKE 538
Query: 531 IHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIK 589
I+S L +I R GY P T VL N++EE KE L HSEK+A AFGLI T+PG I+
Sbjct: 539 INSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIR 598
Query: 590 IVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
IVK L IC DCHS +K SK+ +R+I +RD RFH+F+DG+CSC DYW
Sbjct: 599 IVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 362 bits (930), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 209/611 (34%), Positives = 318/611 (52%), Gaps = 79/611 (12%)
Query: 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
+NV +R LA S F IS + MLR P+ ++PF+ KS ASLSL G+ LHC +
Sbjct: 21 WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80
Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS------ 210
K G E + FV L MY + G A KVF+E P+ S+ + +N LI+G +
Sbjct: 81 KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQS--SQLSVCYNALISGYTANSKVT 138
Query: 211 ----------KIGYLRKAVELFGMMPKKNVASWV-----------------------SLI 237
+ G +V + G++P V ++ S I
Sbjct: 139 DAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFI 198
Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
+M+ G ++ LF++MP KG+++W A+I+G+SQNG A L ++ QM +GV + F
Sbjct: 199 TMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPF 258
Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
T+VS LS+CA +GA + G V + N F + A + MYA+CGN+ A VF
Sbjct: 259 TLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIM 318
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
K L++WTAMI +HG E + F M+ G PDG VF+ +L+AC +SG L
Sbjct: 319 PVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGL 378
Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ----------------------- 454
F +M+ +Y +EP +H++ +V+LL R G+ + +
Sbjct: 379 ELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKI 438
Query: 455 -----NSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWS 509
++ +F K+++ +P + YVL+SNIY+ + + R+R +M+ R+ +K PG+S
Sbjct: 439 HKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYS 498
Query: 510 YIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGARE-QGYMPGTEWVLHNIKEEKEEAL 566
Y+E G VH F AG H+ +E+H L+++ E G M EE
Sbjct: 499 YVEHKGRVHLFLAGDRSHEQTEEVHRMLDELETSVMELAGNMDCDR------GEEVSSTT 552
Query: 567 GCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYF 625
HSE+LA+AFG++ + PGT I ++K L +C DCH +K SKI R+ V+RD +RFHYF
Sbjct: 553 REHSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHYF 612
Query: 626 KDGTCSCRDYW 636
KDG CSC+DYW
Sbjct: 613 KDGVCSCKDYW 623
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 636 | ||||||
| 359477907 | 677 | PREDICTED: pentatricopeptide repeat-cont | 0.965 | 0.906 | 0.616 | 0.0 | |
| 224060371 | 719 | predicted protein [Populus trichocarpa] | 0.985 | 0.872 | 0.584 | 0.0 | |
| 449442481 | 679 | PREDICTED: pentatricopeptide repeat-cont | 0.952 | 0.892 | 0.581 | 0.0 | |
| 15220333 | 665 | pentatricopeptide repeat-containing prot | 0.951 | 0.909 | 0.5 | 0.0 | |
| 297848728 | 664 | pentatricopeptide repeat-containing prot | 0.951 | 0.911 | 0.496 | 0.0 | |
| 298205169 | 590 | unnamed protein product [Vitis vinifera] | 0.600 | 0.647 | 0.563 | 1e-131 | |
| 255554062 | 404 | pentatricopeptide repeat-containing prot | 0.515 | 0.811 | 0.601 | 1e-131 | |
| 224140549 | 682 | predicted protein [Populus trichocarpa] | 0.937 | 0.873 | 0.359 | 1e-123 | |
| 224131508 | 643 | predicted protein [Populus trichocarpa] | 0.948 | 0.937 | 0.385 | 1e-121 | |
| 449526834 | 666 | PREDICTED: pentatricopeptide repeat-cont | 0.977 | 0.933 | 0.367 | 1e-120 |
| >gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein At1g04840-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 811 bits (2094), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/647 (61%), Positives = 486/647 (75%), Gaps = 33/647 (5%)
Query: 22 SHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDY 81
+H PS + ETH I LIH+SN+ QL QIHAQI LHNLF++SR+ TQLISS+ KS+DY
Sbjct: 32 AHGPSRS-PETHFIPLIHASNTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDY 90
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
ALSIF F NL +FN LIRGLAENS F+ +SHFV MLRLS+RP+RLT PFV KSVA+
Sbjct: 91 ALSIFRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAA 150
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
L + LGR LH ++K G+E+D+FVRV L DMYV++G+ ++FDE+P++NK+ES+LL
Sbjct: 151 LVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILL 210
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
WNVLINGC K+G L KA LF MP++N SW SLI+GF+R GDL +A ELF QMPEK V
Sbjct: 211 WNVLINGCCKVGDLSKAASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNV 270
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
VSWT MINGFSQNG+ EKAL+MF++ML+ GVR ND TVVSAL AC K+GAL+ G R+HNY
Sbjct: 271 VSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNY 330
Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
+S N F L IGTALVDMYAKCGNI++AS VF ETK KDLLTW+ MIWG AIHG ++QA
Sbjct: 331 LSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQA 390
Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
+Q F KM +G PD +FLAILTAC +SG V LNFF+SMR DY IEP++KH+T++V+
Sbjct: 391 LQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVD 450
Query: 442 LLSRVGQDSQGYQNSQN----------------------------SFTKLLQLKPKHPSS 473
LL R G+ + Q+ + KLLQL+PKHP S
Sbjct: 451 LLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGS 510
Query: 474 YVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHK--LAKEI 531
YV LSN+YAA GRW+DV RVRTLM+ R ++KDPGWSYIEV G VH F AG H A+EI
Sbjct: 511 YVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEI 570
Query: 532 HSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKI 590
KLE+I A A+++GYMP T WVLHNI +EEKE+ALG HSEKLALAFGLI T PG+TI+I
Sbjct: 571 SLKLEEITASAKQEGYMPETAWVLHNIEEEEKEDALGSHSEKLALAFGLISTAPGSTIRI 630
Query: 591 VKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
VK L +CGDCHS+MKYASK+S+REI+LRD RFH+FKDGTCSC DYW
Sbjct: 631 VKNLRVCGDCHSMMKYASKLSRREIILRDIKRFHHFKDGTCSCGDYW 677
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa] gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 787 bits (2032), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/660 (58%), Positives = 483/660 (73%), Gaps = 33/660 (5%)
Query: 10 TTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQL 69
T+ P +++ + P TE H ISLIH S + QL QIHAQII+HNL +SS ITTQL
Sbjct: 60 TSENKPKSSLSALFIPPTTPTEAHFISLIHGSKTILQLHQIHAQIIIHNLSSSSLITTQL 119
Query: 70 ISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129
ISS+SL KSI+++L++F+H PKNL FN LIRGL NSHF + I HF MLR ++P+R
Sbjct: 120 ISSSSLRKSINHSLAVFNHHKPKNLFTFNALIRGLTTNSHFFNAIFHFRLMLRSGIKPDR 179
Query: 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE 189
LTYPFV KS+A L LG +HC+I++ G+E D+FVRV L DMYV++ K AFKVFDE
Sbjct: 180 LTYPFVLKSMAGLFSTELGMAIHCMILRCGIELDSFVRVSLVDMYVKVEKLGSAFKVFDE 239
Query: 190 TPEK-NKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKK 248
+PE+ + S LLWNVLI GC K G ++KAV+LF MPKK SW +LIDGF + GD+ +
Sbjct: 240 SPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAMPKKENVSWSTLIDGFAKNGDMDR 299
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
A ELF+QMPEK VVSWT M++GFS+NG++EKAL+MF +ML+ GVR N FT+VSALSACAK
Sbjct: 300 AMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAK 359
Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
+G LEAG+R+H YI N L A+GTALVDMYAKCGNIE+AS VFGET++K + TWT M
Sbjct: 360 IGGLEAGLRIHKYIKDNGLHLTEALGTALVDMYAKCGNIESASEVFGETEQKSIRTWTVM 419
Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
IWG AIHG EQAI FK+MM++G +PD VFLA+LTAC +SGQV + LNFFDSMR DY
Sbjct: 420 IWGWAIHGHSEQAIACFKQMMFAGIKPDEVVFLALLTACMHSGQVDIGLNFFDSMRLDYC 479
Query: 429 IEPSVKHHTVVVNLLSRVGQDSQGY----------------------------QNSQNSF 460
IEPS+KH+T++V++L R GQ + + ++ +
Sbjct: 480 IEPSMKHYTLIVDMLGRSGQLKEALRFIERMPMNPDFVIWGALFCACRAHKKTKMAKFAL 539
Query: 461 TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF 520
KLL+L+P H +Y+ LSN YAA G+W+D RVR LMQ R + K+ GWS IEV G VHRF
Sbjct: 540 NKLLKLEPTHTGNYIFLSNAYAALGQWEDAERVRVLMQNRGVHKNSGWSCIEVEGQVHRF 599
Query: 521 EAGGH--KLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAF 577
+G H K +K I KLE+IMAGA +QGY+PGTEWVLHN+ +EEKE+ LG H EKLALAF
Sbjct: 600 VSGDHDHKDSKAICLKLEEIMAGAVKQGYIPGTEWVLHNMEQEEKEDVLGSHGEKLALAF 659
Query: 578 GLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
LI T+PG TI+IVK L +CGDCHSLMKYASKISQREI+LRD RFH+FKDG+CSCRD+W
Sbjct: 660 ALICTSPGMTIRIVKNLQVCGDCHSLMKYASKISQREIMLRDMKRFHHFKDGSCSCRDHW 719
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein At1g04840-like [Cucumis sativus] gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein At1g04840-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/638 (58%), Positives = 461/638 (72%), Gaps = 32/638 (5%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
ETH I LIH+SNST +LRQIH Q+ N+F+SSR+ TQ ISS S S+DYA+SIF F
Sbjct: 42 ETHFIDLIHASNSTHKLRQIHGQLYRCNVFSSSRVVTQFISSCSSLNSVDYAISIFQRFE 101
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
KN ++FN LIRGLAENS F+S IS FV ML+ + P+RLT+PFV KS A+LS +GR
Sbjct: 102 LKNSYLFNALIRGLAENSRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRA 161
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
LHC I+K G+E+D+FVRV L DMYV++ + A KVFDE+PE K+ SVL+WNVLI+G
Sbjct: 162 LHCGILKFGLEFDSFVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYC 221
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
++G L KA ELF MPKK+ SW SLI+GFM+ GD+ +A ELF +MPEK VVSWT M+NG
Sbjct: 222 RMGDLVKATELFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNG 281
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
FSQNG+ EKAL FF ML+ G R ND+T+VSALSACAK+GAL+AG+R+HNY+S N F L
Sbjct: 282 FSQNGDPEKALETFFCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLN 341
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
IGTALVDMYAKCGNIE A VF ETKEK LL W+ MIWG AIHG + +A+QYF+ M +
Sbjct: 342 LVIGTALVDMYAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKF 401
Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDS 450
+GT+PD VFLA+L AC +SGQV L FFD+MR Y IEPS+KH+T+VV++L R G+
Sbjct: 402 TGTKPDSVVFLAVLNACSHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLD 461
Query: 451 QGY----------------------------QNSQNSFTKLLQLKPKHPSSYVLLSNIYA 482
+ + ++ + KLLQL+PKHP SYV LSN YA
Sbjct: 462 EALKFIRAMPITPDFVVWGALFCACRTHKNVEMAELASKKLLQLEPKHPGSYVFLSNAYA 521
Query: 483 AEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMA 540
+ GRW D RVR M+ KDPGWS+IEV+ +HRF AG H A EI+SKL++I A
Sbjct: 522 SVGRWDDAERVRVSMRDHGAHKDPGWSFIEVDHKLHRFVAGDNTHNRAVEIYSKLDEISA 581
Query: 541 GAREQGYMPGTEWVLHNIKEEKEE-ALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGD 599
ARE+GY E VLHNI+EE++E ALG HSEKLALAFG++ T PGTT++IVK L +C D
Sbjct: 582 SAREKGYTKEIECVLHNIEEEEKEEALGYHSEKLALAFGIVSTRPGTTVRIVKNLRVCVD 641
Query: 600 CHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
CHS MKYASK+S+REI+LRD RFH+F DG CSC DYW
Sbjct: 642 CHSFMKYASKMSKREIILRDMKRFHHFNDGVCSCGDYW 679
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15220333|ref|NP_171976.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75192500|sp|Q9MAT2.1|PPR10_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g04840 gi|7211995|gb|AAF40466.1|AC004809_24 F13M7.17 [Arabidopsis thaliana] gi|332189629|gb|AEE27750.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/638 (50%), Positives = 440/638 (68%), Gaps = 33/638 (5%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
E+H ISLIH+ T LR +HAQI+ + SSR+ QL+S +SL KS DY+LSIF +
Sbjct: 29 ESHFISLIHACKDTASLRHVHAQILRRGVL-SSRVAAQLVSCSSLLKSPDYSLSIFRNSE 87
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
+N + N LIRGL EN+ F+S + HF+ MLRL V+P+RLT+PFV KS + L LGR
Sbjct: 88 ERNPFVLNALIRGLTENARFESSVRHFILMLRLGVKPDRLTFPFVLKSNSKLGFRWLGRA 147
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
LH +K+ V+ D+FVR+ L DMY + G+ + AF+VF+E+P++ K ES+L+WNVLING
Sbjct: 148 LHAATLKNFVDCDSFVRLSLVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGYC 207
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
+ + A LF MP++N SW +LI G++ G+L +A +LFE MPEK VVSWT +ING
Sbjct: 208 RAKDMHMATTLFRSMPERNSGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVSWTTLING 267
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
FSQ G+ E A++ +F+ML+ G++ N++T+ + LSAC+K GAL +G+R+H YI N L
Sbjct: 268 FSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLD 327
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
AIGTALVDMYAKCG ++ A+ VF KD+L+WTAMI G A+HGR+ QAIQ F++MMY
Sbjct: 328 RAIGTALVDMYAKCGELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMY 387
Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDS 450
SG +PD VFLA+LTAC S +V L LNFFDSMR DY IEP++KH+ +VV+LL R G+ +
Sbjct: 388 SGEKPDEVVFLAVLTACLNSSEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDLLGRAGKLN 447
Query: 451 Q----------------------------GYQNSQNSFTKLLQLKPKHPSSYVLLSNIYA 482
+ GY+ +++ LL+L P+ SY+ L +A
Sbjct: 448 EAHELVENMPINPDLTTWAALYRACKAHKGYRRAESVSQNLLELDPELCGSYIFLDKTHA 507
Query: 483 AEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMA 540
++G +DV + R +Q+R ++ GWSYIE++G +++F AG HKL +EI KL++I++
Sbjct: 508 SKGNIQDVEKRRLSLQKRIKERSLGWSYIELDGQLNKFSAGDYSHKLTQEIGLKLDEIIS 567
Query: 541 GAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGD 599
A ++GY PG +W +H+I+EE KE G HSEKLAL G ++T PGTTI+I+K L ICGD
Sbjct: 568 LAIQKGYNPGADWSIHDIEEEEKENVTGIHSEKLALTLGFLRTAPGTTIRIIKNLRICGD 627
Query: 600 CHSLMKYASKISQREIVLRDTR-FHYFKDGTCSCRDYW 636
CHSLMKY SKISQR+I+LRD R FH+FKDG CSC DYW
Sbjct: 628 CHSLMKYVSKISQRDILLRDARQFHHFKDGRCSCGDYW 665
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297848728|ref|XP_002892245.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297338087|gb|EFH68504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/637 (49%), Positives = 438/637 (68%), Gaps = 32/637 (5%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
E+H ISLIH+ T LR +HA I+ + SSR+ QL+S +SL KS DY+LSIF +
Sbjct: 29 ESHFISLIHTCKDTVSLRLVHAHILRRGVL-SSRVAAQLVSCSSLLKSPDYSLSIFRNSE 87
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
+N +FN LIRGL EN+ F+ + HF+ ML L V+P+RLT+PFV KS + L LGR
Sbjct: 88 ERNPFVFNALIRGLTENARFECSVRHFILMLTLGVKPDRLTFPFVLKSNSKLGFRWLGRA 147
Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
LH +K+ V+ D+FVRV L DMY + G+ AF+VF+ETP++ K ES+LLWNVL+NG
Sbjct: 148 LHAATLKNFVDCDSFVRVSLVDMYAKTGQLNHAFQVFEETPDRIKKESILLWNVLVNGYC 207
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
+ ++ A LF MP++N SW +LI G++ G+L +A +LFE MPEK VVSWT +ING
Sbjct: 208 RAKDMQMATTLFRSMPERNSGSWSTLIKGYVDNGELNRAKQLFELMPEKNVVSWTTLING 267
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
FSQ G+ E A++ +F+ML+ G++ N++TV + LSAC+K GAL +G+R+H YI N L
Sbjct: 268 FSQTGDYETAISTYFEMLEKGLKPNEYTVAAVLSACSKSGALGSGIRIHGYILDNGIKLD 327
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
AIGT+L+DMYAKCG ++ A+ VF KD+L+WTAMI G A+HGR+ QAIQ F++MMY
Sbjct: 328 RAIGTSLLDMYAKCGEVDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMY 387
Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDS 450
SG +PD VFLA+LTAC SG+V L LNFFDSMR DY IEP++KH+ +VV+LL R G+
Sbjct: 388 SGEKPDEVVFLAVLTACLNSGEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDLLGRAGKLD 447
Query: 451 QGYQ---------------------------NSQNSFTKLLQLKPKHPSSYVLLSNIYAA 483
+ ++ + LL+L P+ SY+ L +AA
Sbjct: 448 EAHELVEYMPINPDLTTWAALYRACKAHKSNRTDIVLQNLLELDPELRGSYIFLDKTHAA 507
Query: 484 EGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAG 541
+G+++DV + R +Q++ ++ G SYIE++ +++F A HK A+EI KLE I++
Sbjct: 508 KGKYQDVEKRRLSLQKKVKERSMGCSYIELDCQLNKFAADDYTHKQAQEIRLKLEGIISL 567
Query: 542 AREQGYMPGTEWVLHNIKEEKEEAL-GCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDC 600
A E+GY+PG +W +H+I+EE++E++ G HSEKLAL GL++T PGTTI+I+K L ICGDC
Sbjct: 568 AIERGYIPGADWSIHDIEEEEKESVTGIHSEKLALTLGLLRTAPGTTIRIIKNLRICGDC 627
Query: 601 HSLMKYASKISQREIVLRDTR-FHYFKDGTCSCRDYW 636
HSLMKY SKISQR I+LRD R FH+FKDG+CSC DYW
Sbjct: 628 HSLMKYVSKISQRGILLRDARQFHHFKDGSCSCGDYW 664
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|298205169|emb|CBI17228.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 477 bits (1227), Expect = e-131, Method: Compositional matrix adjust.
Identities = 245/435 (56%), Positives = 299/435 (68%), Gaps = 53/435 (12%)
Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
VSL+D +++ G+L +LF++ P Q +AE L L GVR
Sbjct: 177 VSLVDMYVKIGELGFGLQLFDESP---------------QRNKAESIL------LWNGVR 215
Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
ND TVVSAL AC K+GAL+ G R+HNY+S N F L IGTALVDMYAKCGNI++AS V
Sbjct: 216 PNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRV 275
Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
F ETK KDLLTW+ MIWG AIHG ++QA+Q F KM +G PD +FLAILTAC +SG V
Sbjct: 276 FVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNV 335
Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN--------------- 458
LNFF+SMR DY IEP++KH+T++V+LL R G+ + Q+
Sbjct: 336 DQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFC 395
Query: 459 -------------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
+ KLLQL+PKHP SYV LSN+YAA GRW+DV RVRTLM+ R ++KD
Sbjct: 396 ACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKD 455
Query: 506 PGWSYIEVNGHVHRFEAGGHK--LAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEK 562
PGWSYIEV G VH F AG H A+EI KLE+I A A+++GYMP T WVLHNI +EEK
Sbjct: 456 PGWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEEITASAKQEGYMPETAWVLHNIEEEEK 515
Query: 563 EEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-R 621
E+ALG HSEKLALAFGLI T PG+TI+IVK L +CGDCHS+MKYASK+S+REI+LRD R
Sbjct: 516 EDALGSHSEKLALAFGLISTAPGSTIRIVKNLRVCGDCHSMMKYASKLSRREIILRDIKR 575
Query: 622 FHYFKDGTCSCRDYW 636
FH+FKDGTCSC DYW
Sbjct: 576 FHHFKDGTCSCGDYW 590
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255554062|ref|XP_002518071.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223542667|gb|EEF44204.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 223/371 (60%), Positives = 288/371 (77%)
Query: 26 SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
S N ETHII LIHSS + QL QIH QI+LHNL +SS IT QLISS+SL KSI Y+LSI
Sbjct: 30 SQNQIETHIIPLIHSSKTALQLHQIHTQILLHNLSSSSHITAQLISSSSLRKSIAYSLSI 89
Query: 86 FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
F+ + PKNL++FN LIRGL +N + I HF+ +LR ++P+ LT+ FV KS+ASLSL
Sbjct: 90 FNSYHPKNLYLFNALIRGLTDNYRYLDSIDHFILLLRSDIKPDHLTFSFVLKSIASLSLK 149
Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
L R LH +I++ G+E+D+FVR+ + D+YV+L + + A KVFDE+P++ S LLWNVL
Sbjct: 150 GLARALHGMILRCGLEFDSFVRISMVDVYVKLEEVKLALKVFDESPQRFHEGSTLLWNVL 209
Query: 206 INGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
INGC K+G +RKA+ELF MP +N ASW SLI+GF + GDL++A E F++MP K VVSWT
Sbjct: 210 INGCCKVGDMRKALELFEDMPLRNTASWNSLINGFFKIGDLEQAIEHFDRMPVKDVVSWT 269
Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
M+NGFSQNG+ EKAL++F +MLD V+ NDFT+VSALSACAK+GALEAG+R+H Y+ N
Sbjct: 270 TMVNGFSQNGDHEKALSVFSRMLDEDVKPNDFTIVSALSACAKIGALEAGLRIHKYLKDN 329
Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
F L A+G ALVDM+AKCGNI +AS VF E KEKD++TW+ MIWG AIHG +E+AIQ F
Sbjct: 330 GFRLNRAVGNALVDMHAKCGNINSASQVFKEAKEKDIITWSVMIWGWAIHGHFEEAIQCF 389
Query: 386 KKMMYSGTEPD 396
K+MMY+G +PD
Sbjct: 390 KQMMYAGIQPD 400
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa] gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 241/671 (35%), Positives = 381/671 (56%), Gaps = 75/671 (11%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI 96
LI + K L+ IHA ++ L + + +++ + + +Y+ I D N+ +
Sbjct: 16 LIQGFSCLKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFL 75
Query: 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
FN +IRGL N FQ I + M + + P+ T+PFV K+ A + LG +H L+V
Sbjct: 76 FNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVV 135
Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
K+G E DAFV++ L ++Y + G AFKVFD+ P+KN + W I+G +G R
Sbjct: 136 KAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFAS----WTATISGYVGVGKCR 191
Query: 217 KAVELF------GMMPK---------------------------------KNVASWVSLI 237
+A+++F G+ P +NV +L+
Sbjct: 192 EAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALV 251
Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
D + + G++++A +F+ M EK +VSW++MI G++ NG ++AL +FF+ML+ G++ + +
Sbjct: 252 DFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCY 311
Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
+V L +CA++GALE G N I+ N+F +GTAL+DMYAKCG ++ A VF
Sbjct: 312 AMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGM 371
Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
++KD + W A I GLA+ G + A+ F +M SG +PD F+ +L AC ++G V+
Sbjct: 372 RKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGR 431
Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNS------------------ 459
+F+SM + + P ++H+ +V+LL R G + +Q ++
Sbjct: 432 RYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRL 491
Query: 460 ----------FTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWS 509
KL+ L+P H +YVLLSNIYAA +W++ A++R++M R +KK PG+S
Sbjct: 492 HRDTQLVEVVLKKLIALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGVKKIPGYS 551
Query: 510 YIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEAL 566
+IEV+G VH+F G H L+++I++KL ++ + GY+P T+ VL +I+EE KE +
Sbjct: 552 WIEVDGVVHQFLVGDTSHPLSEKIYAKLGELAKDLKAAGYVPTTDHVLFDIEEEEKEHFI 611
Query: 567 GCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYF 625
GCHSEKLA+AFGLI T P I +VK L +CGDCH +K+ S+I+ REI++RD RFH F
Sbjct: 612 GCHSEKLAVAFGLISTAPNDKILVVKNLRVCGDCHEAIKHISRIAGREIIVRDNNRFHCF 671
Query: 626 KDGTCSCRDYW 636
DG CSC+DYW
Sbjct: 672 TDGLCSCKDYW 682
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa] gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 248/644 (38%), Positives = 372/644 (57%), Gaps = 41/644 (6%)
Query: 30 TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIFD 87
TE +SL++ S +QIHA ++ L + I +L+ + SL S+DYA +F
Sbjct: 4 TEPLCLSLLNICKSLTTFKQIHANVLKLGLESDPFIAGKLLHHCAISLSDSLDYACRLFR 63
Query: 88 HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP-NRLTYPFVSKSVASLSLLS 146
+ ++ + N LIRGL E+ Q + F+ M R S P + ++ F+ K+ A+L +
Sbjct: 64 YTPNPDVFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVR 123
Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
+G LHC + G++ FV L MY + G A KVFDE PE N + WN ++
Sbjct: 124 VGIQLHCQALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPN----AIAWNAMV 179
Query: 207 NGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
C + G ++ ELF +MP +N+ SW ++ G+ + G+L+ A E+F +MP K VSW+
Sbjct: 180 TACCRGGDMKGGRELFDLMPVRNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWST 239
Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
MI GF+ NG E+A + F ++ G+R N+ ++ LSACA+ GALE G +H +I +
Sbjct: 240 MIVGFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSG 299
Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGET-KEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
++ AL+D Y+KCGN+ A LVF E+++++WT+M+ LA+HG E+AI F
Sbjct: 300 LAWIVSVNNALLDTYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIF 359
Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
KM SG PD F+++L AC ++G V+ +FD M+ Y IEPS++H+ +V+L R
Sbjct: 360 HKMEESGIRPDEIAFISLLYACSHAGLVEQGCEYFDKMKGMYNIEPSIEHYGCMVDLYGR 419
Query: 446 VGQDSQGYQN----------------------------SQNSFTKLLQLKPKHPSSYVLL 477
GQ + Y+ ++ +L +L P + S +VLL
Sbjct: 420 AGQLQKAYEFVCQMPIPCTAIIWRTLLGACSMHGDVKLAEQVKERLSELDPNNSSDHVLL 479
Query: 478 SNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKL 535
SN YA G+WKD A VR M + I K PGWS IEV+ ++ F AG +K+ +E + KL
Sbjct: 480 SNAYAVAGKWKDAASVRRSMTEQRITKTPGWSMIEVDKIMYTFLAGTKQYKITEEAYKKL 539
Query: 536 EDIMAGAR-EQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKK 593
++I+ R E GY+P VLH+I +EEKE ++ HSEKLA+AFG+ + G TI+IVK
Sbjct: 540 KEIIRRLRVEGGYVPEIGRVLHDIEEEEKEGSVSVHSEKLAVAFGIARLCKGRTIRIVKN 599
Query: 594 LTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
L IC DCH++MK S+I + EIV+RD +RFH FKDG CSCRDYW
Sbjct: 600 LRICRDCHAVMKLISQIYKVEIVVRDRSRFHSFKDGYCSCRDYW 643
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 244/664 (36%), Positives = 371/664 (55%), Gaps = 42/664 (6%)
Query: 9 LTTAIAPTTNIKSSHKPSNNITETHIISLIHSSN--STKQLRQIHAQIILHNLFASSRIT 66
L + P + P++ + + ++ L S + S + L Q+HA ++ F ++
Sbjct: 9 LPSPFKPVDFSAEKNIPTSKLPQKTVLKLFDSKSITSLQYLTQLHALVLRSGHFQDHYVS 68
Query: 67 TQLISS-ASLHKS-IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
L+ A+ H S D+AL +F N+ I+N++I+G EN+ I +F + +
Sbjct: 69 GALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAI-YFYGRMVID 127
Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
RPN+ TYP + K+ + + GR +H +VK G+ D ++ MY G+ A
Sbjct: 128 ARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDAR 187
Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKG 244
K+F + V+ WN +I+G K G L A LF MP KN+ SW +I+G + G
Sbjct: 188 KMF-----YSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGG 242
Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
+L A +LF++M E+ +SW++M++G+ G ++AL +F QM R F + S L+
Sbjct: 243 NLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLA 302
Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
AC+ +GA++ G VH Y+ N L +GTAL+DMYAKCG ++ VF E KE+++ T
Sbjct: 303 ACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFT 362
Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
W AMI GLAIHGR E A++ F K+ +P+G + +LTAC ++G V L F +MR
Sbjct: 363 WNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMR 422
Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQDSQG----------------------------YQNS 456
Y ++P ++H+ +V+LL R G S+ + +
Sbjct: 423 EFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLA 482
Query: 457 QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGH 516
+ LL+L+P++ YVLLSNIYA GR+ DV+++R LM+ R IK PG S +++NG
Sbjct: 483 ERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKNRGIKTVPGVSIVDLNGT 542
Query: 517 VHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKL 573
VH F+ G H KEI+ KL+ I + G+ P T VL +I +EEKE A+ HSEKL
Sbjct: 543 VHEFKMGDGSHPQMKEIYRKLKIIKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHSEKL 602
Query: 574 ALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSC 632
A+AFGLI T PG I IVK L +C DCHS K S+I REI++RD R+H+FK+GTCSC
Sbjct: 603 AIAFGLINTLPGKRIHIVKNLRVCDDCHSATKLISQIFDREIIVRDRVRYHHFKNGTCSC 662
Query: 633 RDYW 636
+D+W
Sbjct: 663 KDFW 666
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 636 | ||||||
| TAIR|locus:2010652 | 665 | AT1G04840 "AT1G04840" [Arabido | 0.671 | 0.642 | 0.5 | 3.1e-115 | |
| TAIR|locus:2081635 | 573 | AT3G62890 [Arabidopsis thalian | 0.849 | 0.942 | 0.344 | 3e-69 | |
| TAIR|locus:2098901 | 783 | AT3G61170 [Arabidopsis thalian | 0.567 | 0.461 | 0.371 | 4.2e-69 | |
| TAIR|locus:2154389 | 646 | LPA66 "LOW PSII ACCUMULATION 6 | 0.885 | 0.871 | 0.316 | 3.5e-68 | |
| TAIR|locus:2144143 | 622 | AT5G06540 [Arabidopsis thalian | 0.924 | 0.945 | 0.281 | 9.2e-68 | |
| TAIR|locus:2126352 | 632 | AT4G37380 [Arabidopsis thalian | 0.911 | 0.917 | 0.307 | 4.5e-66 | |
| TAIR|locus:2096414 | 882 | AT3G03580 [Arabidopsis thalian | 0.661 | 0.477 | 0.298 | 1.6e-65 | |
| TAIR|locus:2125899 | 990 | AT4G33170 [Arabidopsis thalian | 0.650 | 0.418 | 0.328 | 2.6e-65 | |
| TAIR|locus:2082886 | 850 | EMB2261 "embryo defective 2261 | 0.661 | 0.495 | 0.300 | 2.3e-62 | |
| TAIR|locus:2130389 | 684 | LOI1 "lovastatin insensitive 1 | 0.669 | 0.622 | 0.304 | 3.9e-62 |
| TAIR|locus:2010652 AT1G04840 "AT1G04840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1136 (405.0 bits), Expect = 3.1e-115, P = 3.1e-115
Identities = 214/428 (50%), Positives = 298/428 (69%)
Query: 31 ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
E+H ISLIH+ T LR +HAQI+ + SSR+ QL+S +SL KS DY+LSIF +
Sbjct: 29 ESHFISLIHACKDTASLRHVHAQILRRGVL-SSRVAAQLVSCSSLLKSPDYSLSIFRNSE 87
Query: 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFXXXXXXXXXXXXXXXX 150
+N + N LIRGL EN+ F+S + HF+ MLRL V+P+RLT+PF
Sbjct: 88 ERNPFVLNALIRGLTENARFESSVRHFILMLRLGVKPDRLTFPFVLKSNSKLGFRWLGRA 147
Query: 151 XHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
H +K+ V+ D+FVR+ L DMY + G+ + AF+VF+E+P++ K ES+L+WNVLING
Sbjct: 148 LHAATLKNFVDCDSFVRLSLVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGYC 207
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
+ + A LF MP++N SW +LI G++ G+L +A +LFE MPEK VVSWT +ING
Sbjct: 208 RAKDMHMATTLFRSMPERNSGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVSWTTLING 267
Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
FSQ G+ E A++ +F+ML+ G++ N++T+ + LSAC+K GAL +G+R+H YI N L
Sbjct: 268 FSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLD 327
Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
AIGTALVDMYAKCG ++ A+ VF KD+L+WTAMI G A+HGR+ QAIQ F++MMY
Sbjct: 328 RAIGTALVDMYAKCGELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMY 387
Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDS 450
SG +PD VFLA+LTAC S +V L LNFFDSMR DY IEP++KH+ +VV+LL R G+ +
Sbjct: 388 SGEKPDEVVFLAVLTACLNSSEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDLLGRAGKLN 447
Query: 451 QGYQNSQN 458
+ ++ +N
Sbjct: 448 EAHELVEN 455
|
|
| TAIR|locus:2081635 AT3G62890 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
Identities = 201/584 (34%), Positives = 302/584 (51%)
Query: 79 IDYALSIFDHFTPKNLHIF--NVLIRGLAEN-SHFQ--SCISHFVFMLRLSVRPNRLTYP 133
I YA IF H L F N++IR + N S Q S IS ++ M V P+ T+P
Sbjct: 8 IAYANPIF-HIRHLKLESFLWNIIIRAIVHNVSSPQRHSPISVYLRMRNHRVSPDFHTFP 66
Query: 134 FXXXXXXXXXXXXXXXXXHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK 193
F H I+ G++ D FVR L +MY G R A +VFD++ K
Sbjct: 67 FLLPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSK 126
Query: 194 NKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELF 253
+ + WN ++N +K G + A +LF MP++NV SW LI+G++ G K+A +LF
Sbjct: 127 D----LPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLF 182
Query: 254 EQM----PEKGVV-----SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL- 303
+M P + V + + +++ + G E+ +D D + +AL
Sbjct: 183 REMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQG-KWVHAYIDKYHVEIDIVLGTALI 241
Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
AK G+LE RV N + +K +A++ A G + +F E D +
Sbjct: 242 DMYAKCGSLERAKRVFNALGSKK-DVKAY--SAMICCLAMYGLTDECFQLFSEMTTSDNI 298
Query: 364 TWTAM----IWGLAIH-GRYEQAIQYFKKMMYS-GTEPDGTVFLAILTACWYSGQVKLAL 417
++ I G +H G + YFK M+ G P + ++ SG +K A
Sbjct: 299 NPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAE 358
Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG-YQNSQNSFTKLLQLKPKHPSSYVL 476
+F SM +EP V + +LLS G G + + + +L++L P + +YVL
Sbjct: 359 SFIASMP----MEPDV---LIWGSLLS--GSRMLGDIKTCEGALKRLIELDPMNSGAYVL 409
Query: 477 LSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSK 534
LSN+YA GRW +V +R M+ + I K PG SY+EV G VH F G + ++ I++
Sbjct: 410 LSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESERIYAM 469
Query: 535 LEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKK 593
L++IM RE GY+ T+ VL ++ E +KE AL HSEKLA+AF L++T PGT ++I+K
Sbjct: 470 LDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVRIIKN 529
Query: 594 LTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
L ICGDCH +MK SK+ REIV+RD RFH+F+DG+CSCRD+W
Sbjct: 530 LRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRDFW 573
|
|
| TAIR|locus:2098901 AT3G61170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 603 (217.3 bits), Expect = 4.2e-69, Sum P(2) = 4.2e-69
Identities = 140/377 (37%), Positives = 212/377 (56%)
Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
+L+D + ++G + A ++FE M EK V+SWTA++ G + NG ++AL +F M G+
Sbjct: 369 ALVDMYAKRGIMDSALKVFEGMIEKDVISWTALVTGNTHNGSYDEALKLFCNMRVGGITP 428
Query: 295 NDFTVVSALSACAKVGALEAGVRVH-NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
+ S LSA A++ LE G +VH NYI + F ++ +LV MY KCG++E A+++
Sbjct: 429 DKIVTASVLSASAELTLLEFGQQVHGNYIK-SGFPSSLSVNNSLVTMYTKCGSLEDANVI 487
Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM--MYSGTEPDGTVFLAILTACWYSG 411
F + +DL+TWT +I G A +G E A +YF M +Y G P + ++ SG
Sbjct: 488 FNSMEIRDLITWTCLIVGYAKNGLLEDAQRYFDSMRTVY-GITPGPEHYACMIDLFGRSG 546
Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHP 471
M +EP TV +L+ + +N + + L++L+P +
Sbjct: 547 DFVKVEQLLHQME----VEPDA---TVWKAILA-ASRKHGNIENGERAAKTLMELEPNNA 598
Query: 472 SSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF--EAGGHKLAK 529
YV LSN+Y+A GR + A VR LM+ R+I K+PG S++E G VH F E H
Sbjct: 599 VPYVQLSNMYSAAGRQDEAANVRRLMKSRNISKEPGCSWVEEKGKVHSFMSEDRRHPRMV 658
Query: 530 EIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTI 588
EI+SK++++M +E GY + LH++ KE KE L HSEKLA+AFGL+ G I
Sbjct: 659 EIYSKVDEMMLLIKEAGYFADMSFALHDLDKEGKELGLAYHSEKLAVAFGLLVVPSGAPI 718
Query: 589 KIVKKLTICGDCHSLMK 605
+I+K L +CGDCHS MK
Sbjct: 719 RIIKNLRVCGDCHSAMK 735
|
|
| TAIR|locus:2154389 LPA66 "LOW PSII ACCUMULATION 66" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
Identities = 194/613 (31%), Positives = 304/613 (49%)
Query: 56 LHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCIS 115
+ + A++ I +S H+ +DYA IF+ +N +N +IRG +E+ ++ I+
Sbjct: 52 MRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIA 111
Query: 116 HFVFMLRLS---VRPNRLTYPFXXXXXXXXXXXXXXXXXHCLIVKSGVEYDAFVRVHLAD 172
+F +S V PNR T+P H L +K G D FV +L
Sbjct: 112 ITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVR 171
Query: 173 MYVQLGKTRGAFKVFDE----------TPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
MYV G + A +F + T + + ++LWNV+I+G ++G + A LF
Sbjct: 172 MYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLF 231
Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV----VSWTAMINGFSQNGEAE 278
M +++V SW ++I G+ G K A E+F +M + + V+ +++ S+ G E
Sbjct: 232 DKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLE 291
Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV------HNYIS----CNDFG 328
+ D+G+R +D + + +K G +E + V N I+ N F
Sbjct: 292 LGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFA 351
Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
+ G G A +D + K + A + + +LLT A G G E+ +YF +M
Sbjct: 352 IHGQAGDA-IDCFCK---MRQAGVRPSDVAYINLLT--ACSHG----GLVEEGRRYFSQM 401
Query: 389 M-YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
+ G EP + ++ SG + A F +M P +K V+ L
Sbjct: 402 VSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNM-------P-IKPDDVIWKALLGAC 453
Query: 448 QDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPG 507
+ + + L+ + P +YV LSN+YA++G W +V+ +R M+ + I+KDPG
Sbjct: 454 RMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPG 513
Query: 508 WSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEE 564
S I+++G +H F E H AKEI+S L +I R GY P T VL N++EE KE
Sbjct: 514 CSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKEN 573
Query: 565 ALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFH 623
L HSEK+A AFGLI T+PG I+IVK L IC DCHS +K SK+ +R+I +RD RFH
Sbjct: 574 VLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFH 633
Query: 624 YFKDGTCSCRDYW 636
+F+DG+CSC DYW
Sbjct: 634 HFQDGSCSCMDYW 646
|
|
| TAIR|locus:2144143 AT5G06540 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
Identities = 175/621 (28%), Positives = 311/621 (50%)
Query: 35 ISLIHSSNSTKQLRQIHAQII----LHNLFASSRITTQLISSASLHKS---IDYALSIFD 87
++L+ S +S L+ IH ++ + ++F +SR+ + ++ +K + YA IF
Sbjct: 16 LALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFS 75
Query: 88 HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFXXXXXXXXXXXXX 147
NL +FN+LIR + + + ML+ + P+ +T+PF
Sbjct: 76 QIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLV 135
Query: 148 XXXXHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
H IV+ G + D +V L MY G A ++F + ++ V+ W ++
Sbjct: 136 GEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRD----VVSWTSMVA 191
Query: 208 GCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS---- 263
G K G + A E+F MP +N+ +W +I+G+ + +KA +LFE M +GVV+
Sbjct: 192 GYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETV 251
Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
++I+ + G E + ++ + + N + + + G +E + V +
Sbjct: 252 MVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLP 311
Query: 324 CNDFGLKGAI--GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
D +I G A+ K + + + G +D+ T+TA++ + G E+
Sbjct: 312 ETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIP-RDV-TFTAVLSACSHGGLVEKG 369
Query: 382 IQYFKKMMYS-GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
++ ++ M G EP + I+ +G++ A NF M VK + ++
Sbjct: 370 LEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMH--------VKPNAPIL 421
Query: 441 NLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500
L + + + ++ L+++KP+H YVLLSNIYA G+W + +R +M+ +
Sbjct: 422 GALLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEK 481
Query: 501 SIKKDPGWSYIEVNGHVHRFEAGG---HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHN 557
+KK PGWS IE++G +++F G H +I K E+I+ R GY T +
Sbjct: 482 LVKKPPGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFD 541
Query: 558 I-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIV 616
+ +EEKE ++ HSEKLA+A+G+++T PGTTI+IVK L +C DCH++ K S++ RE++
Sbjct: 542 VDEEEKESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELI 601
Query: 617 LRD-TRFHYFKDGTCSCRDYW 636
+RD RFH+F++G CSCRDYW
Sbjct: 602 VRDRNRFHHFRNGVCSCRDYW 622
|
|
| TAIR|locus:2126352 AT4G37380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
Identities = 190/618 (30%), Positives = 301/618 (48%)
Query: 37 LIHSSNSTKQLRQIHAQIILHNLFASSR---ITTQLISSASLHKSIDYALSIFDHFTPKN 93
LI S S ++ QIHA I+ HNL R + +L + + H I ++L++F +
Sbjct: 35 LIDKSQSVDEVLQIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPD 94
Query: 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFXXXXXXXXXXXXXXXXXHC 153
L +F I + N +V +L + PN T+ H
Sbjct: 95 LFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTF----SSLLKSCSTKSGKLIHT 150
Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
++K G+ D +V L D+Y + G A KVFD PE++ S +I +K G
Sbjct: 151 HVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSST----AMITCYAKQG 206
Query: 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQM-----PEKGVVSWTAMI 268
+ A LF M ++++ SW +IDG+ + G A LF+++ P+ ++ A +
Sbjct: 207 NVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAAL 266
Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
+ SQ G E + + + +R N + +K G+LE V V N D
Sbjct: 267 SACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDI- 325
Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETK-----EKDLLTWTAMIWGLAIHGRYEQAIQ 383
A++ YA G + A +F E + + +T+ + A G + I+
Sbjct: 326 ---VAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIR 382
Query: 384 YFKKMMYS-GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
F+ M G +P + +++ +GQ+K A +M D SV +V+ +
Sbjct: 383 IFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMD---ADSVLWSSVLGSC 439
Query: 443 LSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502
G G + ++ L+ L K+ YVLLSNIYA+ G ++ VA+VR LM+ + I
Sbjct: 440 KLH-GDFVLGKEIAEY----LIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGI 494
Query: 503 KKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE 560
K+PG S IE+ VH F AG H +KEI++ L I + GY+P T VL +++E
Sbjct: 495 VKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEE 554
Query: 561 -EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD 619
EKE++L HSE+LA+A+GLI T PG+ +KI K L +C DCH++ K SKI+ R+IV+RD
Sbjct: 555 TEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRD 614
Query: 620 -TRFHYFKDGTCSCRDYW 636
RFH+F DG+CSC D+W
Sbjct: 615 RNRFHHFTDGSCSCGDFW 632
|
|
| TAIR|locus:2096414 AT3G03580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 476 (172.6 bits), Expect = 1.6e-65, Sum P(2) = 1.6e-65
Identities = 134/449 (29%), Positives = 229/449 (51%)
Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
N LI+ +K G + ++++F M + +W ++I +R GD ++ QM + VV
Sbjct: 447 NALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVV 506
Query: 263 S--WTAMINGFSQNGEAEKALAMFFQ--MLDAGVRANDFTVVSAL-SACAKVGALEAGVR 317
T ++ A K L +L G + + + +AL +K G LE R
Sbjct: 507 PDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYES-ELQIGNALIEMYSKCGCLENSSR 565
Query: 318 VHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK----DLLTWTAMIWGLA 373
V +S D T ++ Y G E A F + ++ D + + A+I+ +
Sbjct: 566 VFERMSRRDV----VTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACS 621
Query: 374 IHGRYEQAIQYFKKMM-YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS 432
G ++ + F+KM + +P + ++ S ++ A F +M I+P
Sbjct: 622 HSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMP----IKPD 677
Query: 433 VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVAR 492
++ ++L R + S + ++ ++++L P P +L SN YAA +W V+
Sbjct: 678 A---SIWASVL-RACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSL 733
Query: 493 VRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHKL--AKEIHSKLEDIMAGAREQGYMPG 550
+R ++ + I K+PG+S+IEV +VH F +G ++ I+ LE + + ++GY+P
Sbjct: 734 IRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLMAKEGYIPD 793
Query: 551 TEWVLHNIKEEKEEA-LGC-HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYAS 608
V N++EE+E+ L C HSE+LA+AFGL+ T PGT ++++K L +CGDCH + K S
Sbjct: 794 PREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCGDCHEVTKLIS 853
Query: 609 KISQREIVLRDT-RFHYFKDGTCSCRDYW 636
KI REI++RD RFH FKDGTCSC+D W
Sbjct: 854 KIVGREILVRDANRFHLFKDGTCSCKDRW 882
|
|
| TAIR|locus:2125899 AT4G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 558 (201.5 bits), Expect = 2.6e-65, Sum P(2) = 2.6e-65
Identities = 144/439 (32%), Positives = 236/439 (53%)
Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
K G + A F +P + +W ++I G + G+ ++A +F QM GV+ I
Sbjct: 564 KCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIAT 623
Query: 271 FSQNGEAEKALAMFFQMLDAGVR---AND-FTVVSALSACAKVGALEAGVRVHNYISCND 326
++ AL Q+ ++ ND F S + AK G+++ + I +
Sbjct: 624 LAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMN 683
Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETK----EKDLLTWTAMIWGLAIHGRYEQAI 382
A+ LV + A+ G + +F + K + D +T+ ++ + G +A
Sbjct: 684 ITAWNAM---LVGL-AQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAY 739
Query: 383 QYFKKMMYS-GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
++ + M G +P+ + + A +G VK A N +SM +E S + ++
Sbjct: 740 KHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMS----MEASASMYRTLL- 794
Query: 442 LLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501
RV D++ + TKLL+L+P S+YVLLSN+YAA +W ++ RT+M+
Sbjct: 795 AACRVQGDTE---TGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHK 851
Query: 502 IKKDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK 559
+KKDPG+S+IEV +H F + ++ + I+ K++D++ +++GY+P T++ L +++
Sbjct: 852 VKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVE 911
Query: 560 EE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLR 618
EE KE AL HSEKLA+AFGL+ T P T I+++K L +CGDCH+ MKY +K+ REIVLR
Sbjct: 912 EEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLR 971
Query: 619 DT-RFHYFKDGTCSCRDYW 636
D RFH FKDG CSC DYW
Sbjct: 972 DANRFHRFKDGICSCGDYW 990
|
|
| TAIR|locus:2082886 EMB2261 "embryo defective 2261" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 534 (193.0 bits), Expect = 2.3e-62, Sum P(2) = 2.3e-62
Identities = 136/452 (30%), Positives = 243/452 (53%)
Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK--G 260
N +I+ K + A F + +KN+ S+ + +DG R + ++A +L ++ E+ G
Sbjct: 412 NSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELG 471
Query: 261 VVSWT--AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
V ++T ++++G + G K + Q++ G+ N + +S +K G+++ RV
Sbjct: 472 VSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRV 531
Query: 319 HNYISCNDFGLKGAIG-TALVDMYAKCGN----IEAASLVFGETKEKDLLTWTAMIWGLA 373
N++ N + I T+++ +AK G +E + + E + + +T+ A++ +
Sbjct: 532 FNFME-N----RNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACS 586
Query: 374 IHGRYEQAIQYFKKMMYSGT-EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS 432
G + ++F M +P + ++ +G + A F ++M F +
Sbjct: 587 HVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADV--- 643
Query: 433 VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVAR 492
+ T + RV +++ + + K+L+L P P++Y+ LSNIYA G+W++
Sbjct: 644 LVWRTFLG--ACRVHSNTE---LGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTE 698
Query: 493 VRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPG 550
+R M+ R++ K+ G S+IEV +H+F G H A +I+ +L+ ++ + GY+P
Sbjct: 699 MRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPD 758
Query: 551 TEWVLHNIKEEKEEA-----LGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMK 605
T+ VLH ++EE +EA L HSEK+A+AFGLI T+ +++ K L +CGDCH+ MK
Sbjct: 759 TDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMK 818
Query: 606 YASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
Y S +S REIVLRD RFH+FKDG CSC DYW
Sbjct: 819 YISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850
|
|
| TAIR|locus:2130389 LOI1 "lovastatin insensitive 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 479 (173.7 bits), Expect = 3.9e-62, Sum P(2) = 3.9e-62
Identities = 138/453 (30%), Positives = 219/453 (48%)
Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
V + N LI+ K +R + +F M KN SW SL+ +++ + +KA L+ + +
Sbjct: 244 VSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRK 303
Query: 259 KGVVSWTAMINGFSQN--GEA--EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
V + MI+ G A E ++ + A V F + + K G +E
Sbjct: 304 DIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIED 363
Query: 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK------DLLTWTAM 368
+ + + + + + L+ YA G ++ A +F E + + +T+ ++
Sbjct: 364 SEQAFDEMPEKNLVTRNS----LIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSL 419
Query: 369 IWGLAIHGRYEQAIQYFKKMMYS-GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427
+ + G E ++ F M + G EP + I+ +G V+ A F M
Sbjct: 420 LSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMP--- 476
Query: 428 FIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRW 487
I+P++ + N G+ G ++N F +L PK ++VLLSN +AA GRW
Sbjct: 477 -IQPTISVWGALQNACRMHGKPQLGLLAAENLF----KLDPKDSGNHVLLSNTFAAAGRW 531
Query: 488 KDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQ 545
+ VR ++ IKK G+S+I V VH F+A H L KEI + L +
Sbjct: 532 AEANTVREELKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAA 591
Query: 546 GYMPGTEWVLHNIKEEKEEA-LGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLM 604
GY P + L++++EE++ A + HSEKLALAFGL+ I+I K L ICGDCHS
Sbjct: 592 GYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFF 651
Query: 605 KYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
K+ S +REI++RD RFH FKDG CSC+DYW
Sbjct: 652 KFVSGSVKREIIVRDNNRFHRFKDGICSCKDYW 684
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9MAT2 | PPR10_ARATH | No assigned EC number | 0.5 | 0.9512 | 0.9097 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 636 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-113 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-103 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-48 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-34 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-25 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-24 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 2e-17 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-14 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 9e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 358 bits (921), Expect = e-113
Identities = 209/657 (31%), Positives = 316/657 (48%), Gaps = 76/657 (11%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
R++HA ++ + LI+ + A +FD ++ +N +I G EN
Sbjct: 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFEN 266
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
+ F M LSV P+ +T V + L LGR +H +VK+G D V
Sbjct: 267 GECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVC 326
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV------EL 221
L MY+ LG A KVF K+ + W +I+G K G KA+ E
Sbjct: 327 NSLIQMYLSLGSWGEAEKVFSRMETKD----AVSWTAMISGYEKNGLPDKALETYALMEQ 382
Query: 222 FGMMP-----------------------------KKNVASWV----SLIDGFMRKGDLKK 248
+ P +K + S+V +LI+ + + + K
Sbjct: 383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDK 442
Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
A E+F +PEK V+SWT++I G N +AL F QML ++ N T+++ALSACA+
Sbjct: 443 ALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACAR 501
Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
+GAL G +H ++ G G + AL+D+Y +CG + A F + EKD+++W +
Sbjct: 502 IGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF-NSHEKDVVSWNIL 560
Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
+ G HG+ A++ F +M+ SG PD F+++L AC SG V L +F SM Y
Sbjct: 561 LTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYS 620
Query: 429 IEPSVKHHTVVVNLLSRVGQDSQGYQNSQN----------------------------SF 460
I P++KH+ VV+LL R G+ ++ Y +
Sbjct: 621 ITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAA 680
Query: 461 TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF 520
+ +L P Y+LL N+YA G+W +VARVR M+ + DPG S++EV G VH F
Sbjct: 681 QHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAF 740
Query: 521 EAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEALGCHSEKLALAFG 578
H KEI++ LE + G + I+ K++ HSE+LA+AFG
Sbjct: 741 LTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEVSKDDIFCGHSERLAIAFG 800
Query: 579 LIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRD 634
LI T PG I + K L +C +CH+ +K+ SKI +REI +RDT +FH+FKDG CSC D
Sbjct: 801 LINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 327 bits (841), Expect = e-103
Identities = 170/553 (30%), Positives = 282/553 (50%), Gaps = 75/553 (13%)
Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
+ SG E D ++ + M+V+ G A ++FDE PE+N + W +I G G
Sbjct: 149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERN----LASWGTIIGGLVDAGN 204
Query: 215 LRKAVELFGMM-------PKKNVASWV--------------------------------S 235
R+A LF M + + +
Sbjct: 205 YREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCA 264
Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
LID + + GD++ A +F+ MPEK V+W +M+ G++ +G +E+AL ++++M D+GV +
Sbjct: 265 LIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324
Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
FT + +++ LE + H + F L TALVD+Y+K G +E A VF
Sbjct: 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFD 384
Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
K+L++W A+I G HGR +A++ F++M+ G P+ FLA+L+AC YSG +
Sbjct: 385 RMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQ 444
Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY---------------------- 453
F SM ++ I+P H+ ++ LL R G + Y
Sbjct: 445 GWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTAC 504
Query: 454 ------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPG 507
+ + + KL + P+ ++YV+L N+Y + GR + A+V ++R+ + P
Sbjct: 505 RIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPA 564
Query: 508 WSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEA 565
++IEV H F +G H ++EI+ KL+++M E GY+ +L ++ E++E+
Sbjct: 565 CTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKV 624
Query: 566 LGC-HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFH 623
G HSEKLA+AFGLI T+ T ++I + IC DCH ++K+ + +++REIV+RD +RFH
Sbjct: 625 SGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFH 684
Query: 624 YFKDGTCSCRDYW 636
+FK G CSC DYW
Sbjct: 685 HFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 180 bits (457), Expect = 7e-48
Identities = 109/365 (29%), Positives = 179/365 (49%), Gaps = 44/365 (12%)
Query: 82 ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
A +F ++L +NVL+ G A+ +F + + ML VRP+ T+P V ++
Sbjct: 140 AWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGG 199
Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
+ L+ GR +H +V+ G E D V L MYV+ G A VFD P ++ +
Sbjct: 200 IPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRD----CIS 255
Query: 202 WNVLING-----------------------------------CSKIGYLRKAVELFGMMP 226
WN +I+G C +G R E+ G +
Sbjct: 256 WNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVV 315
Query: 227 KK----NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
K +V+ SLI ++ G +A ++F +M K VSWTAMI+G+ +NG +KAL
Sbjct: 316 KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALE 375
Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
+ M V ++ T+ S LSACA +G L+ GV++H + AL++MY+
Sbjct: 376 TYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435
Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
KC I+ A VF EKD+++WT++I GL ++ R +A+ +F++M+ + +P+ +A
Sbjct: 436 KCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIA 494
Query: 403 ILTAC 407
L+AC
Sbjct: 495 ALSAC 499
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 138 bits (348), Expect = 6e-34
Identities = 85/335 (25%), Positives = 146/335 (43%), Gaps = 68/335 (20%)
Query: 117 FVFMLRL-----SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLA 171
+V + RL +V S SL + LG + L+
Sbjct: 89 YVALFRLCEWKRAVEEGSRVCSRALSSHPSLGV-RLGNAM------------------LS 129
Query: 172 DMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMM 225
M+V+ G+ A+ VF + PE++ + WNVL+ G +K GY +A+ L+ G+
Sbjct: 130 -MFVRFGELVHAWYVFGKMPERD----LFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVR 184
Query: 226 PK-----------KNVASWV----------------------SLIDGFMRKGDLKKAGEL 252
P + +LI +++ GD+ A +
Sbjct: 185 PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLV 244
Query: 253 FEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL 312
F++MP + +SW AMI+G+ +NGE + L +FF M + V + T+ S +SAC +G
Sbjct: 245 FDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE 304
Query: 313 EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGL 372
G +H Y+ F + ++ +L+ MY G+ A VF + KD ++WTAMI G
Sbjct: 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGY 364
Query: 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
+G ++A++ + M PD ++L+AC
Sbjct: 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSAC 399
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 1e-25
Identities = 56/177 (31%), Positives = 95/177 (53%)
Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
F+R G+L A +F +MPE+ + SW ++ G+++ G ++AL ++ +ML AGVR + +T
Sbjct: 131 FVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTF 190
Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359
L C + L G VH ++ F L + AL+ MY KCG++ +A LVF
Sbjct: 191 PCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR 250
Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
+D ++W AMI G +G + ++ F M +PD ++++AC G +L
Sbjct: 251 RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG 307
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 1e-24
Identities = 70/270 (25%), Positives = 118/270 (43%), Gaps = 41/270 (15%)
Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFG 223
A R A ++ + F + T ++ L+ C + +R ++
Sbjct: 99 ACGRHREALELFEILEAGCPFTLPAST-----------YDALVEACIALKSIRCVKAVYW 147
Query: 224 MM------PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA 277
+ P + + + V L+ ++ G L A LF++MPE+ + SW +I G G
Sbjct: 148 HVESSGFEPDQYMMNRVLLM--HVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNY 205
Query: 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH-----------NYISCND 326
+A A+F +M + G A T V L A A +G+ AG ++H ++SC
Sbjct: 206 REAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSC-- 263
Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
AL+DMY+KCG+IE A VF EK + W +M+ G A+HG E+A+ +
Sbjct: 264 ---------ALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYY 314
Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
+M SG D F ++ ++ A
Sbjct: 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHA 344
|
Length = 697 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 2e-17
Identities = 37/101 (36%), Positives = 61/101 (60%), Gaps = 13/101 (12%)
Query: 534 KLEDIMAGAREQGYMPGTEWVLHNIKEE-------KEEALGCHSEKLALAFGLIQTTPGT 586
E++ + +G +P T+ + H++ E K + L H+EK ALA+GL+ T
Sbjct: 21 SKEELFQRIKVEGVVPETKEIGHDVDAEEFRDNGIKGKLLASHAEKQALAYGLLTTRI-- 78
Query: 587 TIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFK 626
IK++K+ +CGDCH +Y +K + REI++RD +RFH+FK
Sbjct: 79 -IKVLKR--MCGDCHEFFRYIAKYTGREIIVRDPSRFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 4e-14
Identities = 38/145 (26%), Positives = 73/145 (50%), Gaps = 4/145 (2%)
Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI-- 322
+ + +G+ E+AL + M + V ++ V+ C A+E G RV +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
S G++ +G A++ M+ + G + A VFG+ E+DL +W ++ G A G +++A+
Sbjct: 115 SHPSLGVR--LGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEAL 172
Query: 383 QYFKKMMYSGTEPDGTVFLAILTAC 407
+ +M+++G PD F +L C
Sbjct: 173 CLYHRMLWAGVRPDVYTFPCVLRTC 197
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 3e-12
Identities = 75/341 (21%), Positives = 136/341 (39%), Gaps = 35/341 (10%)
Query: 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
+Q+H ++ + + ++ LI S I+ A +FD K +N ++ G A +
Sbjct: 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALH 303
Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
+ + + + M V ++ T+ + + + L+LL + H ++++G D
Sbjct: 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN 363
Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
L D+Y + G+ A VFD P KN ++ WN LI G G KAVE+F M
Sbjct: 364 TALVDLYSKWGRMEDARNVFDRMPRKN----LISWNALIAGYGNHGRGTKAVEMFERMIA 419
Query: 228 KNVA----SWVSLIDGFMRKGDLKKAGELFEQMPEKG-----VVSWTAMINGFSQNGEAE 278
+ VA ++++++ G ++ E+F+ M E + + MI + G +
Sbjct: 420 EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479
Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG---- 334
+A AM +R F + AL R+H + + G
Sbjct: 480 EAYAM--------IRRAPFKPTVNMW-----AALLTACRIHKNLELGRLAAEKLYGMGPE 526
Query: 335 -----TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
L+++Y G A+ V K K L A W
Sbjct: 527 KLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTW 567
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 8e-09
Identities = 14/50 (28%), Positives = 34/50 (68%), Gaps = 4/50 (8%)
Query: 228 KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV----VSWTAMINGFSQ 273
+V ++ +LIDG+ +KG +++A +LF +M ++G+ +++ +I+G +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 1e-08
Identities = 81/346 (23%), Positives = 147/346 (42%), Gaps = 41/346 (11%)
Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING-FSQNGEAEKAL 281
G+ K+ ++ + +R G +K +L E M ++G++ + + F + + ++A+
Sbjct: 363 GVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAV 422
Query: 282 --AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG--AIGTAL 337
A F L + F ++ +S CA ++ +RV + + GLK + T L
Sbjct: 423 KEAFRFAKLIRNPTLSTFNML--MSVCASSQDIDGALRVLRLV--QEAGLKADCKLYTTL 478
Query: 338 VDMYAKCGNIEAASLVFGETK----EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393
+ AK G ++A VF E E ++ T+ A+I G A G+ +A + M
Sbjct: 479 ISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV 538
Query: 394 EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS------RVG 447
+PD VF A+++AC SG V A + M+ + P H V L+ +V
Sbjct: 539 KPDRVVFNALISACGQSGAVDRAFDVLAEMKAE--THPIDPDHITVGALMKACANAGQVD 596
Query: 448 QDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPG 507
+ + YQ K P Y + N + +G W + M+++ +K D
Sbjct: 597 RAKEVYQMIHEYNIK------GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV 650
Query: 508 W--SYIEVNGHVHRFEAGGHKLAKEIHSKLEDIMAGAREQGYMPGT 551
+ + ++V GH A ++ E I+ AR+QG GT
Sbjct: 651 FFSALVDVAGH-----------AGDLDKAFE-ILQDARKQGIKLGT 684
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 1e-08
Identities = 55/256 (21%), Positives = 115/256 (44%), Gaps = 39/256 (15%)
Query: 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLI 237
GK F+VF E +V + LI+GC++ G + KA +G+M KNV
Sbjct: 486 GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK------ 539
Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG--VRAN 295
P++ V + A+I+ Q+G ++A + +M + +
Sbjct: 540 -------------------PDR--VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD 578
Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG--AIGTALVDMYAKCGNIEAASLV 353
TV + + ACA G ++ V+ I +++ +KG + T V+ ++ G+ + A +
Sbjct: 579 HITVGALMKACANAGQVDRAKEVYQMI--HEYNIKGTPEVYTIAVNSCSQKGDWDFALSI 636
Query: 354 FGETKEK----DLLTWTAMIWGLAIH-GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
+ + K+K D + ++A++ +A H G ++A + + G + + +++ AC
Sbjct: 637 YDDMKKKGVKPDEVFFSALV-DVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695
Query: 409 YSGQVKLALNFFDSMR 424
+ K AL ++ ++
Sbjct: 696 NAKNWKKALELYEDIK 711
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 9e-08
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
VV++ +I+G+ + G+ E+AL +F +M G++ N +T + K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 4e-06
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGF 240
V+ +N LI+G K G + +A++LF M K+ NV ++ LIDG
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 4e-06
Identities = 11/31 (35%), Positives = 23/31 (74%)
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
V++ ++I+G+ + G+ E+AL +F +M + GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-05
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
V++ +I+G + G E+AL +F +M + G+ +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 5e-05
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNV 230
+N LI+G K G L +A+ELF M +K V
Sbjct: 3 YNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 6e-05
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 232 SWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
++ SLI G+ + G L++A ELF++M EKGV
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.6 bits (94), Expect = 9e-05
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 222 FGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
G+ P +V ++ +LIDG R G + +A EL ++M
Sbjct: 1 KGLKP--DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 4e-04
Identities = 11/48 (22%), Positives = 25/48 (52%)
Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
D++T+ +I G G+ E+A++ F +M G +P+ + ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
T+ ++I G G+ E+A++ FK+M G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 12/31 (38%), Positives = 23/31 (74%)
Query: 232 SWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
++ +LIDG + G +++A ELF++M E+G+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIE 32
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.002
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395
T+ A++ LA G + A+ ++M SG +P
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNV 230
+N LI+G K G + +A+ELF M ++ +
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 636 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.98 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.92 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.92 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.88 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.86 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.83 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.83 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.83 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.82 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.8 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.77 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.76 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.74 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.72 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.64 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.64 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.56 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.56 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.56 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.55 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.54 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.54 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.54 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.53 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.52 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.49 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.48 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.48 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.47 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.47 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.47 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.46 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.44 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.41 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.4 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.39 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.36 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.36 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.34 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.32 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.3 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.3 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.29 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.28 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.24 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.24 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.23 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.23 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.23 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.21 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.2 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.2 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.19 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.18 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.17 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.17 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.1 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.09 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.08 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.05 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.04 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.02 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.01 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.0 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.97 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.96 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.96 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.94 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.94 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.92 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.9 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.89 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.89 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.89 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.87 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.86 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.86 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.85 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.84 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.79 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.78 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.78 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.76 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.73 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.69 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.66 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.64 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.6 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.59 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.57 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.55 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.54 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.53 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.53 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.5 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.48 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.48 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.47 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.47 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.46 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.45 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.41 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.41 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.4 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.37 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.36 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.36 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.32 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.31 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.3 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.28 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.24 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.23 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.23 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.22 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.19 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.18 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.13 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.08 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.07 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.07 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.04 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.02 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.01 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.0 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.0 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.97 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.96 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.93 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.92 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.86 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.78 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.76 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.7 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.69 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.67 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.66 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.64 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.64 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.58 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.57 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.56 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.56 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.53 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.5 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.5 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.49 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.43 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.43 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.42 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.4 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.4 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.37 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.36 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.36 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.32 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.26 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.23 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.22 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.19 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.15 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.14 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.14 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.13 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.12 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.12 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.1 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.07 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.07 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.05 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.05 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.04 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.03 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.03 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.03 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.0 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.0 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.98 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.97 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.95 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.93 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.9 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.9 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.86 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.84 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.83 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.8 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.76 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.75 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.7 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.69 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.6 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.58 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.57 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.49 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.44 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.41 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.35 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.34 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.32 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.26 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.15 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.04 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.01 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.95 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.88 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.85 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.83 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.83 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.8 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.56 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.48 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.45 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.41 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.21 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.2 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.07 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.01 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.89 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.83 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.66 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.64 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 94.59 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.41 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.37 | |
| PRK09687 | 280 | putative lyase; Provisional | 94.37 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.35 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.33 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.3 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.27 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.24 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.21 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.19 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.14 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 93.95 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 93.83 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.69 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.62 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.54 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.5 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.45 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 93.31 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.21 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 92.81 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.77 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 92.74 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.63 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.44 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 92.33 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.21 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 92.07 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 91.96 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.92 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.77 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 91.77 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 91.77 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 91.54 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 91.19 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 91.13 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 90.88 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 90.79 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 90.66 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 90.59 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 90.53 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.43 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 90.35 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 90.24 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 90.19 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.11 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 90.07 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 90.03 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 89.91 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.59 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 89.5 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 89.37 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 89.34 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.14 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 89.07 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.05 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 88.75 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 88.71 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 88.69 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 88.2 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.06 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 87.96 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.52 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 87.35 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 87.16 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 87.02 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 86.99 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 86.85 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 86.26 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 86.03 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 85.98 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 85.92 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 85.84 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 85.81 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 85.67 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 85.49 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 85.29 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 85.26 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 85.11 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 84.45 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 83.98 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 83.97 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 83.62 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 83.33 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 83.22 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 83.13 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 83.09 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 82.84 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 82.75 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 81.57 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 81.14 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 80.51 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 80.48 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 80.43 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 80.1 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-120 Score=1019.86 Aligned_cols=619 Identities=33% Similarity=0.568 Sum_probs=598.3
Q ss_pred ccccccccccccccccCCCCCCCCHHHHHHHHHhcCC---hHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHH
Q 006672 7 NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNS---TKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83 (636)
Q Consensus 7 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 83 (636)
+++++|..++..|... +..|+..||..++.+|+. +..+.++|..+++.|+.||+.++|+||.+|+++|+++.|.
T Consensus 166 g~~~~A~~~f~~M~~~---g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 242 (857)
T PLN03077 166 GYFDEALCLYHRMLWA---GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSAR 242 (857)
T ss_pred CCHHHHHHHHHHHHHc---CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHH
Confidence 4567888888888765 578999999999999986 8899999999999999999999999999999999999999
Q ss_pred HHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCC
Q 006672 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163 (636)
Q Consensus 84 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 163 (636)
++|++|+.+|+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.++|..+.+.|+.||
T Consensus 243 ~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d 322 (857)
T PLN03077 243 LVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVD 322 (857)
T ss_pred HHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC-----------------
Q 006672 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----------------- 226 (636)
Q Consensus 164 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------------- 226 (636)
..+||+|+.+|+++|++++|.++|++|. .||..+||++|.+|++.|++++|+++|++|.
T Consensus 323 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a 398 (857)
T PLN03077 323 VSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSA 398 (857)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHH
Confidence 9999999999999999999999999998 8999999999999999999999999999985
Q ss_pred ----------------------CCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHH
Q 006672 227 ----------------------KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284 (636)
Q Consensus 227 ----------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 284 (636)
.++..++++|+++|+++|++++|.++|++|.++|+++||++|.+|+++|+.++|+.+|
T Consensus 399 ~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf 478 (857)
T PLN03077 399 CACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFF 478 (857)
T ss_pred HhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHH
Confidence 3567789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChhc
Q 006672 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364 (636)
Q Consensus 285 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 364 (636)
++|.. ++.||..||+.++.+|++.|+++.+.++|..+.+.|+.++..++++|+++|+++|++++|.++|+.+ ++|+++
T Consensus 479 ~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s 556 (857)
T PLN03077 479 RQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVS 556 (857)
T ss_pred HHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhh
Confidence 99986 5999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHH
Q 006672 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444 (636)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~ 444 (636)
||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++++++|+
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~ 636 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG 636 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999977999999999999999999
Q ss_pred hcCCchHHHHHHH----------------------------HHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHH
Q 006672 445 RVGQDSQGYQNSQ----------------------------NSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTL 496 (636)
Q Consensus 445 ~~g~~~~A~~~~~----------------------------~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 496 (636)
|.|++++|.++++ .+.+++++++|+++..|..|+++|+..|+|++|.++++.
T Consensus 637 r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~ 716 (857)
T PLN03077 637 RAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKT 716 (857)
T ss_pred hCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHH
Confidence 9999999999998 356688899999999999999999999999999999999
Q ss_pred HHhCCCccCCeeeEEEECCEEEEecCCC--cccHHHHHHHHHHHHHHHHHcCCcCCCccccccchHHHhhhhhhhhHHHH
Q 006672 497 MQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEALGCHSEKLA 574 (636)
Q Consensus 497 m~~~g~~~~~~~s~i~~~~~~~~~~~~~--~~~~~~i~~~l~~l~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~hs~~la 574 (636)
|+++|++|+||||||++++++|.|..|| ||+.++||..+++|..+|++.||+||+++++++.+++|+..+++||||||
T Consensus 717 M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~k~~~~~~hse~la 796 (857)
T PLN03077 717 MRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEVSKDDIFCGHSERLA 796 (857)
T ss_pred HHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhccccHHHHHHHHHhccHHHH
Confidence 9999999999999999999999999999 99999999999999999999999999999886644339999999999999
Q ss_pred HHHhccCCCCCCcEEEeeccccccchhhHHHHhhhhcCceEEEec-CcccccccccccCCC
Q 006672 575 LAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRD 634 (636)
Q Consensus 575 ~~~~~~~~~~~~~~~i~~nl~~~~~~h~~~k~~s~~~~~~~~~~d-~~~h~~~~g~csc~~ 634 (636)
+|||||+||||.||||+||||||+|||+++||||++++|+||||| +|||||+||+|||+|
T Consensus 797 ~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 797 IAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999999999999999999999999 999999999999998
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-113 Score=941.79 Aligned_cols=573 Identities=29% Similarity=0.497 Sum_probs=556.4
Q ss_pred CCChhHHHHHHHHhhcCCChHHHHHHhccCC-----CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHH
Q 006672 60 FASSRITTQLISSASLHKSIDYALSIFDHFT-----PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPF 134 (636)
Q Consensus 60 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 134 (636)
.++...++++|..|.+.|++++|.++|+.|. .||..+|++++.+|++.++++.|..++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3456689999999999999999999999885 46889999999999999999999999999999999999999999
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCC
Q 006672 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214 (636)
Q Consensus 135 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 214 (636)
++.+|++.|+++.|.++|+.|. .||..+||+++.+|++.|++++|.++|++|.+.|+.||..+|+.++.++++.|.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 9999999999999999999984 589999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhCC----CCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006672 215 LRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290 (636)
Q Consensus 215 ~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 290 (636)
.+.+.+++..+. .+|..++++|+++|+++|++++|.++|++|..+|+++||+||.+|++.|++++|+++|++|.+.
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 999999987775 5899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHH
Q 006672 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370 (636)
Q Consensus 291 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 370 (636)
|+.||..||++++.+|++.|+++.|.++|..+.+.|+++|..++++|+++|+++|++++|.++|++|.++|+.+||+||.
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~ 399 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIA 399 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCch
Q 006672 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDS 450 (636)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~ 450 (636)
+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++++++|++.|+++
T Consensus 400 ~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~ 479 (697)
T PLN03081 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479 (697)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHH
Confidence 99999999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred HHHHHHH----------------------------HHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 006672 451 QGYQNSQ----------------------------NSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502 (636)
Q Consensus 451 ~A~~~~~----------------------------~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 502 (636)
+|.++++ ++.+++++++|++..+|+.|+++|++.|+|++|.+++++|+++|+
T Consensus 480 eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 480 EAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999998 445677889999999999999999999999999999999999999
Q ss_pred ccCCeeeEEEECCEEEEecCCC--cccHHHHHHHHHHHHHHHHHcCCcCCCccccccchHH-HhhhhhhhhHHHHHHHhc
Q 006672 503 KKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGL 579 (636)
Q Consensus 503 ~~~~~~s~i~~~~~~~~~~~~~--~~~~~~i~~~l~~l~~~~~~~g~~p~~~~~~~~~~~~-~~~~~~~hs~~la~~~~~ 579 (636)
++.|||||+++++.+|.|.+|| ||+..+||+.+.++..+|++.||+||+.+++||++++ |+..+++||||||+||||
T Consensus 560 ~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l 639 (697)
T PLN03081 560 SMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGL 639 (697)
T ss_pred ccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhC
Confidence 9999999999999999999999 9999999999999999999999999999999999988 999999999999999999
Q ss_pred cCCCCCCcEEEeeccccccchhhHHHHhhhhcCceEEEec-CcccccccccccCCCCC
Q 006672 580 IQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636 (636)
Q Consensus 580 ~~~~~~~~~~i~~nl~~~~~~h~~~k~~s~~~~~~~~~~d-~~~h~~~~g~csc~~~~ 636 (636)
|++|||.||||+||||||+|||+++||||++++|+||||| +|||||+||+|||+|||
T Consensus 640 ~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 640 INTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred ccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 9999999999999999999999999999999999999999 99999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-71 Score=625.96 Aligned_cols=598 Identities=24% Similarity=0.354 Sum_probs=513.5
Q ss_pred ccccccccccccccccCCCCCCCCHHHHHHHHHhcCC---hHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHH
Q 006672 7 NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNS---TKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83 (636)
Q Consensus 7 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 83 (636)
+++.+|...+..+...+ ..|+..++..++.+|.+ ++.|.++|+.+++.|..++..++|+||.+|+++|+++.|.
T Consensus 65 g~~~~A~~l~~~m~~~g---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~ 141 (857)
T PLN03077 65 GQLEQALKLLESMQELR---VPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAW 141 (857)
T ss_pred CCHHHHHHHHHHHHhcC---CCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHH
Confidence 56777888888777654 56777888888888865 8999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCC
Q 006672 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163 (636)
Q Consensus 84 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 163 (636)
++|++|++||+++||++|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.++|..+.+.|+.||
T Consensus 142 ~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~ 221 (857)
T PLN03077 142 YVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELD 221 (857)
T ss_pred HHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC-----------------
Q 006672 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----------------- 226 (636)
Q Consensus 164 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------------- 226 (636)
+.++|+|+.+|+++|++++|.++|++|+ .||..+||++|.+|++.|++++|+++|++|.
T Consensus 222 ~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a 297 (857)
T PLN03077 222 VDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISA 297 (857)
T ss_pred cchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Confidence 9999999999999999999999999999 8899999999999999999999999999995
Q ss_pred ----------------------CCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHH
Q 006672 227 ----------------------KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284 (636)
Q Consensus 227 ----------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 284 (636)
.||..+|++|+.+|+++|++++|.++|++|..+|+++||++|.+|.+.|++++|+++|
T Consensus 298 ~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf 377 (857)
T PLN03077 298 CELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETY 377 (857)
T ss_pred HHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHH
Confidence 4688899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChhc
Q 006672 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364 (636)
Q Consensus 285 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 364 (636)
++|.+.|+.||..||+.++.+|++.|+++.|.++|+.+.+.|+.++..++++|+++|+++|++++|.++|++|.++|+++
T Consensus 378 ~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs 457 (857)
T PLN03077 378 ALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVIS 457 (857)
T ss_pred HHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHH
Q 006672 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444 (636)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~ 444 (636)
||+||.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|.++.+.+++..+.+ .|+.++..++++|+++|.
T Consensus 458 ~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~-~g~~~~~~~~naLi~~y~ 535 (857)
T PLN03077 458 WTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR-TGIGFDGFLPNALLDLYV 535 (857)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH-hCCCccceechHHHHHHH
Confidence 99999999999999999999999986 5999999999999999999999999999999995 899999999999999999
Q ss_pred hcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCeeeEEEECCEEEEec-CC
Q 006672 445 RVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFE-AG 523 (636)
Q Consensus 445 ~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~i~~~~~~~~~~-~~ 523 (636)
++|++++|.++|+++ ++|..+|++|+.+|++.|+.++|.++|++|.+.|+.|+......-+ ..+. .|
T Consensus 536 k~G~~~~A~~~f~~~--------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll----~a~~~~g 603 (857)
T PLN03077 536 RCGRMNYAWNQFNSH--------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL----CACSRSG 603 (857)
T ss_pred HcCCHHHHHHHHHhc--------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH----HHHhhcC
Confidence 999999999999843 4589999999999999999999999999999999998852211000 0000 11
Q ss_pred CcccHHHHHHHHHHHHHHHH-HcCCcCCCccccccc---------hHH---------------Hhhhhh---hh--h---
Q 006672 524 GHKLAKEIHSKLEDIMAGAR-EQGYMPGTEWVLHNI---------KEE---------------KEEALG---CH--S--- 570 (636)
Q Consensus 524 ~~~~~~~i~~~l~~l~~~~~-~~g~~p~~~~~~~~~---------~~~---------------~~~~~~---~h--s--- 570 (636)
. .+...++++.|+ +.|..|+......-+ ++- ...++. .| -
T Consensus 604 ~-------v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~ 676 (857)
T PLN03077 604 M-------VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELG 676 (857)
T ss_pred h-------HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHH
Confidence 1 222334555565 556666643321100 000 000110 01 1
Q ss_pred HHHH-HHHhccCCCCCCcEEEeeccccccchhhHHHHhhhhcCc--------eEEEecCcccccccccccC
Q 006672 571 EKLA-LAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQR--------EIVLRDTRFHYFKDGTCSC 632 (636)
Q Consensus 571 ~~la-~~~~~~~~~~~~~~~i~~nl~~~~~~h~~~k~~s~~~~~--------~~~~~d~~~h~~~~g~csc 632 (636)
|+.| ..+.+.+..++..+.+.+-+...|+..++.+....|-.+ ..|.-++..|-|..|.-|-
T Consensus 677 e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h 747 (857)
T PLN03077 677 ELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESH 747 (857)
T ss_pred HHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCC
Confidence 1111 234455555555544444456778899999888766554 4443346778887776554
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-64 Score=558.54 Aligned_cols=503 Identities=15% Similarity=0.193 Sum_probs=456.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCC-CCChhHHHHHHHHhhcCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCCchH
Q 006672 34 IISLIHSSNSTKQLRQIHAQIILHNL-FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQS 112 (636)
Q Consensus 34 ~~~~l~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 112 (636)
...-+..++++++|.++++.|.+.|. .++..+++.++..|.+.|.+++|.++|+.|+.||..+||.+|.+|++.|++++
T Consensus 376 ~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~ 455 (1060)
T PLN03218 376 AYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDG 455 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHH
Confidence 33333345789999999999999985 57888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC
Q 006672 113 CISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPE 192 (636)
Q Consensus 113 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 192 (636)
|+++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|++.|++++|.++|++|.+
T Consensus 456 A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~ 535 (1060)
T PLN03218 456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS 535 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC------CCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCC----Chh
Q 006672 193 KNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP------KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK----GVV 262 (636)
Q Consensus 193 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~ 262 (636)
.|+.||..+|+.+|.+|++.|++++|.++|++|. .||..+|++++.+|++.|++++|.++|+.|.+. +..
T Consensus 536 ~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ 615 (1060)
T PLN03218 536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE 615 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChH
Confidence 9999999999999999999999999999999995 589999999999999999999999999999864 468
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHh
Q 006672 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342 (636)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 342 (636)
+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.|+.|+..+|++|+.+|+
T Consensus 616 tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~ 695 (1060)
T PLN03218 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695 (1060)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHhhcc----CCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHH
Q 006672 343 KCGNIEAASLVFGETK----EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418 (636)
Q Consensus 343 ~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 418 (636)
++|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+
T Consensus 696 k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~ 775 (1060)
T PLN03218 696 NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLD 775 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999995 489999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhhcCCCCChhHHHHHHHHHH----hcC-------------------CchHHHHHHHHHHHHHhccCCCCchhHH
Q 006672 419 FFDSMRFDYFIEPSVKHHTVVVNLLS----RVG-------------------QDSQGYQNSQNSFTKLLQLKPKHPSSYV 475 (636)
Q Consensus 419 ~~~~m~~~~~~~p~~~~~~~l~~~~~----~~g-------------------~~~~A~~~~~~~~~~~~~l~p~~~~~~~ 475 (636)
+|+.|.+ .|+.|+..+|+++++++. +++ ..++|..+|++|.+.++ .| |..+|.
T Consensus 776 l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi--~P-d~~T~~ 851 (1060)
T PLN03218 776 LLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGT--LP-TMEVLS 851 (1060)
T ss_pred HHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCC--CC-CHHHHH
Confidence 9999985 899999999999998743 222 23678999999987743 45 788999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCccCCeeeEEEECCEEEEecCCCcccHHHHHHHHHHHHHHHHHcCCcCCCc
Q 006672 476 LLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHKLAKEIHSKLEDIMAGAREQGYMPGTE 552 (636)
Q Consensus 476 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~i~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~p~~~ 552 (636)
.++.++...+.++.+..+++.|...+..++... .+..++.+ +.+ ....-.++++|.+.|+.|+.+
T Consensus 852 ~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~----y~~Li~g~--~~~------~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 852 QVLGCLQLPHDATLRNRLIENLGISADSQKQSN----LSTLVDGF--GEY------DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHhcccccHHHHHHHHHHhccCCCCcchhh----hHHHHHhh--ccC------hHHHHHHHHHHHHcCCCCCcc
Confidence 999888889999999999988877665544311 11122212 111 123456889999999999976
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-61 Score=536.46 Aligned_cols=535 Identities=14% Similarity=0.178 Sum_probs=463.9
Q ss_pred ccccccccccccccccCCCCCCCCHHHHHHHHHhc---CChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHH
Q 006672 7 NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSS---NSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83 (636)
Q Consensus 7 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 83 (636)
+++.+|.++|+.|...+. ..++..+...++..| +.+++|..++..|.. |+..+|+.||..|++.|+++.|.
T Consensus 384 G~l~eAl~Lfd~M~~~gv--v~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~ 457 (1060)
T PLN03218 384 GRIKDCIDLLEDMEKRGL--LDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGAL 457 (1060)
T ss_pred cCHHHHHHHHHHHHhCCC--CCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHH
Confidence 577899999999887654 234555555555554 559999999988864 89999999999999999999999
Q ss_pred HHhccCC----CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhC
Q 006672 84 SIFDHFT----PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG 159 (636)
Q Consensus 84 ~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 159 (636)
++|+.|. .||..+||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|.+.|
T Consensus 458 ~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G 537 (1060)
T PLN03218 458 RVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN 537 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 9999886 689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC----CCChHHH
Q 006672 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPE--KNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASW 233 (636)
Q Consensus 160 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~ 233 (636)
+.||..+||.||.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|+.|. .|+..+|
T Consensus 538 v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ty 617 (1060)
T PLN03218 538 VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVY 617 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHH
Confidence 999999999999999999999999999999975 6789999999999999999999999999999998 4677999
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006672 234 VSLIDGFMRKGDLKKAGELFEQMPE----KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309 (636)
Q Consensus 234 ~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 309 (636)
+.+|.+|++.|++++|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.
T Consensus 618 nsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~ 697 (1060)
T PLN03218 618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA 697 (1060)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 9999999999999999999999984 678999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC----CChhcHHHHHHHHHHcCChHHHHHHH
Q 006672 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE----KDLLTWTAMIWGLAIHGRYEQAIQYF 385 (636)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~ 385 (636)
|++++|.++|+.|.+.|+.||..+|++||.+|++.|++++|.++|++|.. ||..+|++++.+|++.|+.++|.++|
T Consensus 698 G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~ 777 (1060)
T PLN03218 698 KNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLL 777 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999974 89999999999999999999999999
Q ss_pred HHHhHcCCCCCHHHHHHHHHHHHh----c-------------------CcHHHHHHHHHHhHhhcCCCCChhHHHHHHHH
Q 006672 386 KKMMYSGTEPDGTVFLAILTACWY----S-------------------GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442 (636)
Q Consensus 386 ~~m~~~g~~p~~~t~~~ll~a~~~----~-------------------g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 442 (636)
++|.+.|+.||..+|+.++..|.+ . +..++|..+|++|.+ .|+.|+..+|+.++.+
T Consensus 778 ~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~-~Gi~Pd~~T~~~vL~c 856 (1060)
T PLN03218 778 SQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS-AGTLPTMEVLSQVLGC 856 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH-CCCCCCHHHHHHHHHH
Confidence 999999999999999999876542 1 224679999999995 8999999999999999
Q ss_pred HHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCeeeEEEECCEEEEecC
Q 006672 443 LSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEA 522 (636)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~i~~~~~~~~~~~ 522 (636)
+.+.+..+.+..+++.+. ..-.+++..+|++|++++.+ ..++|..++++|.+.|+.|+....-...--.++.+-.
T Consensus 857 l~~~~~~~~~~~m~~~m~---~~~~~~~~~~y~~Li~g~~~--~~~~A~~l~~em~~~Gi~p~~~~~~~~~~~d~~~~~~ 931 (1060)
T PLN03218 857 LQLPHDATLRNRLIENLG---ISADSQKQSNLSTLVDGFGE--YDPRAFSLLEEAASLGVVPSVSFKKSPIVIDAEELPV 931 (1060)
T ss_pred hcccccHHHHHHHHHHhc---cCCCCcchhhhHHHHHhhcc--ChHHHHHHHHHHHHcCCCCCcccccCceEEEcccCcc
Confidence 988888888888877543 23345578899999998832 2368999999999999998864211122223344443
Q ss_pred CCcccHHH-HHHHHHHHHHHHHHcC-CcCCCcccccc
Q 006672 523 GGHKLAKE-IHSKLEDIMAGAREQG-YMPGTEWVLHN 557 (636)
Q Consensus 523 ~~~~~~~~-i~~~l~~l~~~~~~~g-~~p~~~~~~~~ 557 (636)
|- ++. +...+..+.... +.| ..|.-...++.
T Consensus 932 ~a---a~~~l~~wl~~~~~~~-~~g~~lp~~~~~~~~ 964 (1060)
T PLN03218 932 FA---AEVYLLTILKGLKHRL-AAGAKLPNVTILLPT 964 (1060)
T ss_pred hh---HHHHHHHHHHHHHHHH-hccCcCCcceeeecc
Confidence 32 111 223455555554 445 45654443444
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-62 Score=537.64 Aligned_cols=550 Identities=17% Similarity=0.236 Sum_probs=469.1
Q ss_pred ccccccccccccccccCCCCCCCCHHHHHHHHHhcCC---hHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHH
Q 006672 7 NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNS---TKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83 (636)
Q Consensus 7 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 83 (636)
++..+|+.+|..+...+ +..|+..++..++.+|.+ ++.+.++|..+.+.|+.||+.++|.|+.+|+++|+++.|.
T Consensus 101 g~~~~Al~~f~~m~~~~--~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 178 (697)
T PLN03081 101 GRHREALELFEILEAGC--PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDAR 178 (697)
T ss_pred CCHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHH
Confidence 45677888887776533 345889999999999876 8899999999999999999999999999999999999999
Q ss_pred HHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCC
Q 006672 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163 (636)
Q Consensus 84 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 163 (636)
++|++|+.||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|+.+.+.++|..+.+.|+.+|
T Consensus 179 ~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d 258 (697)
T PLN03081 179 RLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGD 258 (697)
T ss_pred HHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC----CCChHHHHHHHHH
Q 006672 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDG 239 (636)
Q Consensus 164 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~ 239 (636)
..++|+|+++|+++|++++|.++|++|. ++|+++||+||.+|++.|++++|+++|++|. .||..+|++++.+
T Consensus 259 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a 334 (697)
T PLN03081 259 TFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRI 334 (697)
T ss_pred ceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999998 8899999999999999999999999999995 6899999999999
Q ss_pred HHhcCCHHHHHHHHhhCC----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHH
Q 006672 240 FMRKGDLKKAGELFEQMP----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315 (636)
Q Consensus 240 ~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 315 (636)
|++.|++++|.+++..|. .+|+.+||+||.+|++.|++++|.++|++|. .||..||++++.+|++.|+.++|
T Consensus 335 ~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A 410 (697)
T PLN03081 335 FSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKA 410 (697)
T ss_pred HHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHH
Confidence 999999999999999986 4678999999999999999999999999996 47999999999999999999999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC-----CChhcHHHHHHHHHHcCChHHHHHHHHHHhH
Q 006672 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-----KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (636)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 390 (636)
.++|++|.+.|+.||..+|++++.+|++.|.+++|.++|+.|.+ |+..+|+.|+.+|++.|+.++|.+++++|
T Consensus 411 ~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-- 488 (697)
T PLN03081 411 VEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-- 488 (697)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC--
Confidence 99999999999999999999999999999999999999999964 78899999999999999999999999876
Q ss_pred cCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCC
Q 006672 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPK 469 (636)
Q Consensus 391 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~ 469 (636)
+..|+..+|+.++.+|...|+++.|..+++++. ++.|+ ..+|..|+++|++.|++++|.+++++|.++++...|.
T Consensus 489 -~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~---~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g 564 (697)
T PLN03081 489 -PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY---GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPA 564 (697)
T ss_pred -CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh---CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCC
Confidence 578999999999999999999999999999986 35664 7899999999999999999999999999998776654
Q ss_pred CchhHHHHHH-------H---H-HHcCChhHHHHHHHHHHhCCCccCCeeeEEEECCEEEEecCCCcccHHHHHHHHHHH
Q 006672 470 HPSSYVLLSN-------I---Y-AAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHKLAKEIHSKLEDI 538 (636)
Q Consensus 470 ~~~~~~~l~~-------~---~-~~~g~~~~A~~~~~~m~~~g~~~~~~~s~i~~~~~~~~~~~~~~~~~~~i~~~l~~l 538 (636)
- +|..+.+ . + ....-++...++.++|++.|+.|+..+...++... .....+....++|
T Consensus 565 ~--s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~---------~~~~~~~~hsekl 633 (697)
T PLN03081 565 C--TWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDED---------EEKVSGRYHSEKL 633 (697)
T ss_pred e--eEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHH---------HHHHHHHhccHHH
Confidence 2 2211100 0 0 00111445678889999999999875433222111 0001111111111
Q ss_pred HHHHHHcCCc--CCC--ccccccchHHHhhhhhhhhHHHHHHHhccCCCCCCcEEEeeccc
Q 006672 539 MAGAREQGYM--PGT--EWVLHNIKEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLT 595 (636)
Q Consensus 539 ~~~~~~~g~~--p~~--~~~~~~~~~~~~~~~~~hs~~la~~~~~~~~~~~~~~~i~~nl~ 595 (636)
- ...|.. |.. .-++.++.-| ..||+ ++.+|+...+..|-|-++-|
T Consensus 634 a---~a~~l~~~~~~~~i~i~knlr~c----~dch~-----~~k~~s~~~~r~i~~rd~~r 682 (697)
T PLN03081 634 A---IAFGLINTSEWTPLQITQSHRIC----KDCHK-----VIKFIALVTKREIVVRDASR 682 (697)
T ss_pred H---HHhhCccCCCCCeEEEecCCEEC----CCchh-----hHHHHhhhcceEEEEecCCc
Confidence 1 133432 221 1222333222 23676 78889999999988887766
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.8e-28 Score=278.96 Aligned_cols=444 Identities=13% Similarity=0.081 Sum_probs=243.3
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHH
Q 006672 41 SNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT---PKNLHIFNVLIRGLAENSHFQSCISHF 117 (636)
Q Consensus 41 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 117 (636)
.+++++|.+.+..+.+... .+...+..+...+...|++++|.+.|+.+. +.+...+..++..+.+.|++++|+.++
T Consensus 376 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 454 (899)
T TIGR02917 376 LGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAA 454 (899)
T ss_pred CCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHH
Confidence 3334444444444443321 123333334444444444444444443322 112223333444444444444555444
Q ss_pred HHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCC
Q 006672 118 VFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197 (636)
Q Consensus 118 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 197 (636)
+.+... .+++..++..+...+...|++++|.+.++.+++.. +.+...+..+...+...|++++|.+.|+++...+ +.
T Consensus 455 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~ 531 (899)
T TIGR02917 455 KKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PK 531 (899)
T ss_pred HHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cC
Confidence 444432 12344455555566666666666666666665543 3334455556666666666666666666655443 44
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHhhCC---CCChHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHH
Q 006672 198 SVLLWNVLINGCSKIGYLRKAVELFGMMP---KKNVASWVSLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMINGF 271 (636)
Q Consensus 198 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 271 (636)
+..++..+...+.+.|+.++|..+|+++. ..+...+..++..|.+.|++++|..+++.+.. .+..+|..++..|
T Consensus 532 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 611 (899)
T TIGR02917 532 NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQ 611 (899)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 55566666666666666666666666654 22334555566666666666666666666542 2345666666666
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHH
Q 006672 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351 (636)
Q Consensus 272 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 351 (636)
...|++++|+..|+++.+.. +.+...+..+..++...|++++|..++..+.+.. +.+...+..++..+...|++++|.
T Consensus 612 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 689 (899)
T TIGR02917 612 LAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAK 689 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666666666542 3344555566666666666666666666666543 444556666666666666666666
Q ss_pred HHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcC
Q 006672 352 LVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428 (636)
Q Consensus 352 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 428 (636)
++++.+.+ .+...+..+...+...|++++|++.|+++.. ..|+..++..+..++...|++++|.+.++.+.+ .
T Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~ 765 (899)
T TIGR02917 690 KIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK--RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLK--T 765 (899)
T ss_pred HHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--h
Confidence 66666553 2444555666666666666666666666665 334445555555666666666666666666653 1
Q ss_pred CCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 429 IEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 429 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
.+.+...+..++..|.+.|++++|.+.|+++. +..|+++.++..++.++...|+ .+|+.+++++.+
T Consensus 766 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~----~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~ 831 (899)
T TIGR02917 766 HPNDAVLRTALAELYLAQKDYDKAIKHYRTVV----KKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALK 831 (899)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh
Confidence 23345556666666666666666666665433 2345555555555555555555 445555555444
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-28 Score=277.29 Aligned_cols=482 Identities=12% Similarity=0.084 Sum_probs=371.7
Q ss_pred ccccccccccccccccCCCCCCCCHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHh
Q 006672 7 NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86 (636)
Q Consensus 7 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f 86 (636)
++.++|...+....... |........+...+...++++.|...+..+.+.... .......++..|.+.|++++|..++
T Consensus 377 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 454 (899)
T TIGR02917 377 GDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAA 454 (899)
T ss_pred CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHH
Confidence 45556666666555432 222222334455555667788888888888876532 3445666778888889999999888
Q ss_pred ccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCC
Q 006672 87 DHFT---PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163 (636)
Q Consensus 87 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 163 (636)
+.+. +.+..+|+.+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.+ +.+
T Consensus 455 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~ 532 (899)
T TIGR02917 455 KKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKN 532 (899)
T ss_pred HHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCc
Confidence 8765 4467788888888888999999999998887743 1234456667777888889999999998888765 456
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC---CCChHHHHHHHHHH
Q 006672 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP---KKNVASWVSLIDGF 240 (636)
Q Consensus 164 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~ 240 (636)
..++..+...|.+.|+.++|...|+++...+ +.+...+..++..+.+.|++++|+.+++++. +.+...|..+...|
T Consensus 533 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 611 (899)
T TIGR02917 533 LRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQ 611 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 7788888888888899999999888887665 6667788888888888999999998888876 34567888888888
Q ss_pred HhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHH
Q 006672 241 MRKGDLKKAGELFEQMPE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317 (636)
Q Consensus 241 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 317 (636)
.+.|++++|...|+++.+ .+...|..++..|.+.|++++|...|+++.+.. +.+..++..+...+...|++++|..
T Consensus 612 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 690 (899)
T TIGR02917 612 LAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKK 690 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 888999999888887653 346678888888888899999999888888753 4457778888888888888888888
Q ss_pred HHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC--CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCC
Q 006672 318 VHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395 (636)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 395 (636)
+++.+.+.. +.+...+..+...|.+.|++++|.+.|+.+.. |+..++..++.++...|++++|.+.++++.+.. +.
T Consensus 691 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~ 768 (899)
T TIGR02917 691 IAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PN 768 (899)
T ss_pred HHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 888888765 56777788888888888889988888888764 555677778888888888888888888888742 22
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHH
Q 006672 396 DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYV 475 (636)
Q Consensus 396 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~ 475 (636)
+...+..+...|...|++++|.++|+++.+. -++++..+..++.++.+.|+ ++|++.++++. ++.|.++..+.
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~----~~~~~~~~~~~ 841 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKAL----KLAPNIPAILD 841 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHH----hhCCCCcHHHH
Confidence 4567777788888888888888888888752 24567788888888888888 77888887554 56788888888
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCc
Q 006672 476 LLSNIYAAEGRWKDVARVRTLMQRRSIK 503 (636)
Q Consensus 476 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 503 (636)
.++.+|...|++++|.++++++.+.+..
T Consensus 842 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 842 TLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 8888888888888888888888886643
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-32 Score=221.52 Aligned_cols=102 Identities=56% Similarity=0.990 Sum_probs=93.6
Q ss_pred eeeEEEECCEEEEecCCC--cccHHHHHHHHHHHHHHHHHcCCcCCCccccccchHH-H--------hhhhhhhhHHHHH
Q 006672 507 GWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-K--------EEALGCHSEKLAL 575 (636)
Q Consensus 507 ~~s~i~~~~~~~~~~~~~--~~~~~~i~~~l~~l~~~~~~~g~~p~~~~~~~~~~~~-~--------~~~~~~hs~~la~ 575 (636)
||||+++ |.|++|| ||+. ++..++...||.|++..+.|+++++ + +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 7899887 9999999 9988 4566778899999999999988776 5 5688999999999
Q ss_pred HHhccCCCCCCcEEEeecc-ccccchhhHHHHhhhhcCceEEEec-Ccccccc
Q 006672 576 AFGLIQTTPGTTIKIVKKL-TICGDCHSLMKYASKISQREIVLRD-TRFHYFK 626 (636)
Q Consensus 576 ~~~~~~~~~~~~~~i~~nl-~~~~~~h~~~k~~s~~~~~~~~~~d-~~~h~~~ 626 (636)
||||+++ +|+||+ |||+|||+++|+||++++|+|+||| +|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 899999 9999999999999999999999999 9999997
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-20 Score=218.92 Aligned_cols=476 Identities=8% Similarity=-0.001 Sum_probs=326.0
Q ss_pred ccccccccccccccccCCCCCCCCHHHHHH-HHHhcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHH
Q 006672 7 NRLTTAIAPTTNIKSSHKPSNNITETHIIS-LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85 (636)
Q Consensus 7 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 85 (636)
++.++|.+.+...+....+ ...-...+.. +...-++.++|...++.+++.. +.++.+...+...+...|+.++|...
T Consensus 126 g~~~eA~~~~~~~l~~~p~-~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~ 203 (1157)
T PRK11447 126 GRTEEALASYDKLFNGAPP-ELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAV 203 (1157)
T ss_pred CCHHHHHHHHHHHccCCCC-ChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 5667777777777764322 1111111222 2222355888999999888874 33566777888888889999999888
Q ss_pred hccCCCCCc------ch-----------------HH----------------------------------HHHHHHHhCC
Q 006672 86 FDHFTPKNL------HI-----------------FN----------------------------------VLIRGLAENS 108 (636)
Q Consensus 86 f~~~~~~~~------~~-----------------~~----------------------------------~li~~~~~~g 108 (636)
|+++..... .. +. .....+...|
T Consensus 204 l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g 283 (1157)
T PRK11447 204 LEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSG 283 (1157)
T ss_pred HHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCC
Confidence 876531100 00 00 1122345567
Q ss_pred CchHHHHHHHHhHHCCCCC-CcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCC-hhHH------------HHHHHHH
Q 006672 109 HFQSCISHFVFMLRLSVRP-NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD-AFVR------------VHLADMY 174 (636)
Q Consensus 109 ~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~------------~~li~~~ 174 (636)
++++|+..|++..+. .| +...+..+..++.+.|++++|...|++.++...... ...+ ..+...+
T Consensus 284 ~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 284 QGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 778888888777763 34 455666666777777888888888877776543221 1111 1223456
Q ss_pred HhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCC---CChHHHHHHHHHHHhcCCHHHHHH
Q 006672 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK---KNVASWVSLIDGFMRKGDLKKAGE 251 (636)
Q Consensus 175 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 251 (636)
.+.|++++|...|++..+.. +.+...+..+...+...|++++|++.|++... .+...+..+...|. .++.++|..
T Consensus 362 ~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~ 439 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALA 439 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHH
Confidence 67778888888887776654 45666777777778888888888888877763 33445556666664 346777777
Q ss_pred HHhhCCCCC------------hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Q 006672 252 LFEQMPEKG------------VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319 (636)
Q Consensus 252 ~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 319 (636)
+++.+.... ...+..+...+...|++++|++.|++..+.. +-+...+..+...+...|++++|...+
T Consensus 440 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l 518 (1157)
T PRK11447 440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALM 518 (1157)
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 777665321 1234456677888899999999999988753 334566777888888999999999999
Q ss_pred HHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCC----Ch---------hcHHHHHHHHHHcCChHHHHHHHH
Q 006672 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK----DL---------LTWTAMIWGLAIHGRYEQAIQYFK 386 (636)
Q Consensus 320 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~~g~~~~A~~~~~ 386 (636)
+.+.+.. +.++..+..+...+.+.|+.++|...++.+... +. ..+..+...+...|+.++|+++++
T Consensus 519 ~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~ 597 (1157)
T PRK11447 519 RRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR 597 (1157)
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9888654 445566666666677888889998888887642 11 112244566778888888888877
Q ss_pred HHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc
Q 006672 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQL 466 (636)
Q Consensus 387 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l 466 (636)
. ..++...+..+...+...|++++|+..|++..+. -+.++..+..++.+|...|++++|++.+++ +++.
T Consensus 598 ~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~----ll~~ 666 (1157)
T PRK11447 598 Q-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAK----LPAT 666 (1157)
T ss_pred h-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH----Hhcc
Confidence 2 2334456667778888899999999999988852 233577888888999999999999988884 3466
Q ss_pred CCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 467 KPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 467 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
.|+++..+..++.++...|++++|.++++++....
T Consensus 667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 88888888889999999999999999999887754
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8e-22 Score=194.05 Aligned_cols=381 Identities=15% Similarity=0.211 Sum_probs=329.0
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCC-CcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChh-HHHH
Q 006672 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP-NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF-VRVH 169 (636)
Q Consensus 92 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~ 169 (636)
.-..+|..+...+-..|++++|+.+|+.|.+ ++| ....|..+..++...|+.+.|.+.|...++. .|+.. ..+.
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~ 189 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSD 189 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcc
Confidence 3456899999999999999999999999998 456 4578889999999999999999999999885 45544 3344
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCh---HHHHHHHHHHHhcCCH
Q 006672 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV---ASWVSLIDGFMRKGDL 246 (636)
Q Consensus 170 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g~~ 246 (636)
+-......|++++|...|.+..+.. +--.++|+.|...+-.+|+...|++.|++....|+ ..|-.|...|...+.+
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIF 268 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcc
Confidence 5555666899999999998876553 44578999999999999999999999999986554 5788999999999999
Q ss_pred HHHHHHHhhCCC--CC-hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 006672 247 KKAGELFEQMPE--KG-VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN-DFTVVSALSACAKVGALEAGVRVHNYI 322 (636)
Q Consensus 247 ~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~ 322 (636)
+.|...|.+... |+ .+.+..|...|...|..+-|+..|++.++. .|+ ...|+.+..++-..|++.+|.+.+...
T Consensus 269 d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 269 DRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred hHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 999999987653 33 678888999999999999999999999875 454 578999999999999999999999999
Q ss_pred HHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC--CC-hhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HH
Q 006672 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--KD-LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GT 398 (636)
Q Consensus 323 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ 398 (636)
+... +......+.|...|...|.+++|..+|....+ |+ ...+|.|...|.++|++++|+..|++.+. ++|+ ..
T Consensus 347 L~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAd 423 (966)
T KOG4626|consen 347 LRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFAD 423 (966)
T ss_pred HHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHH
Confidence 8765 56677889999999999999999999998876 33 45789999999999999999999999999 9999 56
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHH
Q 006672 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLL 477 (636)
Q Consensus 399 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l 477 (636)
.|+.+...|-..|+++.|.+.+.+.+. +.|. .+.++.|...|...|++.+|+..|+.+ ++++|+.+.+|..+
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~---~nPt~AeAhsNLasi~kDsGni~~AI~sY~~a----LklkPDfpdA~cNl 496 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQ---INPTFAEAHSNLASIYKDSGNIPEAIQSYRTA----LKLKPDFPDAYCNL 496 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHh---cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHH----HccCCCCchhhhHH
Confidence 899999999999999999999999885 6777 778999999999999999999999854 58999999999999
Q ss_pred HHHHHHcCChhH
Q 006672 478 SNIYAAEGRWKD 489 (636)
Q Consensus 478 ~~~~~~~g~~~~ 489 (636)
+.++---.+|.+
T Consensus 497 lh~lq~vcdw~D 508 (966)
T KOG4626|consen 497 LHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHhcccc
Confidence 888776666665
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-19 Score=210.92 Aligned_cols=443 Identities=12% Similarity=0.059 Sum_probs=337.8
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHhH
Q 006672 45 KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT---PKNLHIFNVLIRGLAENSHFQSCISHFVFML 121 (636)
Q Consensus 45 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 121 (636)
..+...+....+....|... ...+...+...|++++|...|++.. +.+...+..+...+.+.|++++|+..|++..
T Consensus 252 ~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al 330 (1157)
T PRK11447 252 AAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKAL 330 (1157)
T ss_pred HHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444554444433233322 2234556778999999999998764 4577889999999999999999999999998
Q ss_pred HCCCCCCcc---cHHH------------HHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 006672 122 RLSVRPNRL---TYPF------------VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186 (636)
Q Consensus 122 ~~g~~p~~~---t~~~------------ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 186 (636)
+.. |+.. .+.. ....+...|++++|...++++++.. +.+...+..+...|...|++++|++.
T Consensus 331 ~~~--p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~ 407 (1157)
T PRK11447 331 ALD--PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERY 407 (1157)
T ss_pred HhC--CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 753 4322 1211 1335668899999999999999875 45667788899999999999999999
Q ss_pred HhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCC------------hHHHHHHHHHHHhcCCHHHHHHHHh
Q 006672 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN------------VASWVSLIDGFMRKGDLKKAGELFE 254 (636)
Q Consensus 187 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~ 254 (636)
|++..+.. +.+...+..+...|. .++.++|+.+++.+.... ...+..+...+...|++++|.+.|+
T Consensus 408 y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~ 485 (1157)
T PRK11447 408 YQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQR 485 (1157)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99988665 556777877777775 567899999998876322 1234556778889999999999999
Q ss_pred hCCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCch
Q 006672 255 QMPEK---GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331 (636)
Q Consensus 255 ~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 331 (636)
+..+. +...+..+...|.+.|++++|...|+++.+.. +.+...+..+...+...++.++|...++.+......++.
T Consensus 486 ~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~ 564 (1157)
T PRK11447 486 QRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNI 564 (1157)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhH
Confidence 87643 35677889999999999999999999998753 234444444445567789999999998876533222221
Q ss_pred ---------hHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHH
Q 006672 332 ---------AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFL 401 (636)
Q Consensus 332 ---------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~ 401 (636)
.....+.+.+...|+.++|.++++. ...+...+..+...+.+.|++++|+..|++..+ ..|+ ...+.
T Consensus 565 ~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~ 641 (1157)
T PRK11447 565 QELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARL 641 (1157)
T ss_pred HHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHH
Confidence 1233567788999999999999984 234566778899999999999999999999998 5666 56888
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCc------hhH
Q 006672 402 AILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHP------SSY 474 (636)
Q Consensus 402 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~------~~~ 474 (636)
.+...+...|++++|.+.++...+ ..| +...+..+..++.+.|++++|.++++++.. ..|+++ ..+
T Consensus 642 ~la~~~~~~g~~~eA~~~l~~ll~---~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~----~~~~~~~~~~~a~~~ 714 (1157)
T PRK11447 642 GLIEVDIAQGDLAAARAQLAKLPA---TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIP----QAKSQPPSMESALVL 714 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhc---cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh----hCccCCcchhhHHHH
Confidence 999999999999999999998874 344 466778889999999999999999997654 334332 466
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHh-CCCcc
Q 006672 475 VLLSNIYAAEGRWKDVARVRTLMQR-RSIKK 504 (636)
Q Consensus 475 ~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~~ 504 (636)
..++.++...|++++|...+++... .|+.|
T Consensus 715 ~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 715 RDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 6779999999999999999998753 34443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-21 Score=190.52 Aligned_cols=452 Identities=13% Similarity=0.086 Sum_probs=351.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCCCCC-cchHH--HHHHHHHhCC
Q 006672 32 THIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN-LHIFN--VLIRGLAENS 108 (636)
Q Consensus 32 ~~~~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~-~~~~~--~li~~~~~~g 108 (636)
..+...|...-+......+..+..+.....+ ....|..-.-+.|++.+|.+--...-..| ..+=+ .+-..+.+..
T Consensus 19 ~~~~~~ld~~~~s~~s~~v~qq~~~t~~~~~--~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~ 96 (966)
T KOG4626|consen 19 EAFSRKLDQSVSSSGSSSVLQQFNKTHEGSD--DRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGS 96 (966)
T ss_pred HHHHHHhccCcccccchHHHHHhccCCccch--hHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhccc
Confidence 3344444433333333444444443322212 13455556667889988888665443222 12212 2223445555
Q ss_pred CchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 006672 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188 (636)
Q Consensus 109 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 188 (636)
+.+.....-....+. ...-..+|+.+...+-..|+++.|...++.+++.. +..+..|..+..++...|+.+.|...|.
T Consensus 97 r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~ 174 (966)
T KOG4626|consen 97 RLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFF 174 (966)
T ss_pred chhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHH
Confidence 555443332222221 22245789999999999999999999999999864 3356788899999999999999999998
Q ss_pred hCCCCCCCCChh-hHHHHHHHHHhcCChHHHHHHHhhCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---h
Q 006672 189 ETPEKNKSESVL-LWNVLINGCSKIGYLRKAVELFGMMPKKN---VASWVSLIDGFMRKGDLKKAGELFEQMPEKG---V 261 (636)
Q Consensus 189 ~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~ 261 (636)
+..+. .|+.. ..+.+...+-..|+.++|...|.+..+.+ ...|+.|...+...|++-.|+.-|++...-| .
T Consensus 175 ~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~ 252 (966)
T KOG4626|consen 175 EALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFL 252 (966)
T ss_pred HHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcch
Confidence 88755 34433 34445556667899999999888777433 3589999999999999999999999988655 5
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhH
Q 006672 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA-NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340 (636)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 340 (636)
..|-.|...|...+.+++|+..|.+.... .| ....+..+...|-..|.++.|+..+++.++.. |.-+..|+.|..+
T Consensus 253 dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanA 329 (966)
T KOG4626|consen 253 DAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANA 329 (966)
T ss_pred HHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHH
Confidence 68999999999999999999999988864 45 45677788888889999999999999998765 5567899999999
Q ss_pred HhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHH
Q 006672 341 YAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLA 416 (636)
Q Consensus 341 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 416 (636)
+-..|++.+|.+.+.+... ....+.+.|...|...|.+++|..+|....+ +.|. ...++.|...|-+.|++++|
T Consensus 330 Lkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~A 407 (966)
T KOG4626|consen 330 LKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDA 407 (966)
T ss_pred HHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHH
Confidence 9999999999999998875 3566889999999999999999999999998 8888 56899999999999999999
Q ss_pred HHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHH
Q 006672 417 LNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRT 495 (636)
Q Consensus 417 ~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (636)
...+++..+ +.|+ ...|+.++..|...|+.+.|...+.++ +.++|.-..++..|+.+|..+|+..+|+.-++
T Consensus 408 i~~Ykealr---I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rA----I~~nPt~AeAhsNLasi~kDsGni~~AI~sY~ 480 (966)
T KOG4626|consen 408 IMCYKEALR---IKPTFADALSNMGNTYKEMGDVSAAIQCYTRA----IQINPTFAEAHSNLASIYKDSGNIPEAIQSYR 480 (966)
T ss_pred HHHHHHHHh---cCchHHHHHHhcchHHHHhhhHHHHHHHHHHH----HhcCcHHHHHHhhHHHHhhccCCcHHHHHHHH
Confidence 999999885 8888 779999999999999999999998855 47899989999999999999999999999999
Q ss_pred HHHhCC
Q 006672 496 LMQRRS 501 (636)
Q Consensus 496 ~m~~~g 501 (636)
...+..
T Consensus 481 ~aLklk 486 (966)
T KOG4626|consen 481 TALKLK 486 (966)
T ss_pred HHHccC
Confidence 998743
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-18 Score=191.89 Aligned_cols=226 Identities=13% Similarity=0.111 Sum_probs=167.9
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHH
Q 006672 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341 (636)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 341 (636)
..|..+..++.. +++++|+..|.+.... .|+......+..++...|++++|...++.+... +|+...+..+...+
T Consensus 478 ~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~al 552 (987)
T PRK09782 478 AAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTA 552 (987)
T ss_pred HHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHH
Confidence 345555555554 6777788777766654 355544444445556788888888888877544 34444556677778
Q ss_pred hhcCCHHHHHHHHhhccCCChhcHHHH---HHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHH
Q 006672 342 AKCGNIEAASLVFGETKEKDLLTWTAM---IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418 (636)
Q Consensus 342 ~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 418 (636)
.+.|+.++|...|++..+.++..++.. .......|++++|+..+++..+ ..|+...+..+..++.+.|++++|..
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~ 630 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVS 630 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 888888888888887776433333332 2333345899999999999888 66777788888888899999999999
Q ss_pred HHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHH
Q 006672 419 FFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLM 497 (636)
Q Consensus 419 ~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 497 (636)
.+++..+ ..| +...+..+..++...|++++|++.++++. +++|.++..+..++.+|...|++++|...+++.
T Consensus 631 ~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL----~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 631 DLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAH----KGLPDDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9998875 344 46788888888999999999999887554 678999999999999999999999999999999
Q ss_pred HhCC
Q 006672 498 QRRS 501 (636)
Q Consensus 498 ~~~g 501 (636)
.+..
T Consensus 704 l~l~ 707 (987)
T PRK09782 704 IDDI 707 (987)
T ss_pred HhcC
Confidence 8743
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-18 Score=190.54 Aligned_cols=389 Identities=10% Similarity=0.015 Sum_probs=273.4
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 006672 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQ 176 (636)
Q Consensus 97 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 176 (636)
+......+.+.|++++|+..|++..+ +.|+...|..+..++...|+++.|...+...++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 33455566677777777777777665 44666666666667777777777777777777653 3345566667777777
Q ss_pred cCChHHHHHHHhhCCCCCC-----------------------------CCChhhHHHHHHHHHhcCChHHHHHHHhhCCC
Q 006672 177 LGKTRGAFKVFDETPEKNK-----------------------------SESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227 (636)
Q Consensus 177 ~g~~~~A~~~~~~m~~~~~-----------------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 227 (636)
.|++++|..-|......+- +++..++..+.. |......+.+..-+....+
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGN-YLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHH-HHHHccCCcchhhhhcccc
Confidence 7777777665544332210 111111111111 1111111111111111111
Q ss_pred CChH---HHHHHHHHH---HhcCCHHHHHHHHhhCCCC------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 006672 228 KNVA---SWVSLIDGF---MRKGDLKKAGELFEQMPEK------GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295 (636)
Q Consensus 228 ~~~~---~~~~li~~~---~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 295 (636)
.+.. .+..+...+ ...+++++|.+.|+...+. ....|+.+...+...|++++|+..|++..+.. +-+
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc
Confidence 1111 111111111 2246789999999987642 25678889999999999999999999998753 223
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHH
Q 006672 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGL 372 (636)
Q Consensus 296 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 372 (636)
...+..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|++..+ .+...|..+...+
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence 5678888888999999999999999998775 56788999999999999999999999998875 3566788899999
Q ss_pred HHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCCh-h-------HHHHHHHHH
Q 006672 373 AIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV-K-------HHTVVVNLL 443 (636)
Q Consensus 373 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~-------~~~~l~~~~ 443 (636)
.+.|++++|+..|++.++ ..|+ ...+..+..++...|++++|...|++..+ +.|+. . .++.....+
T Consensus 444 ~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALF 518 (615)
T ss_pred HHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHH
Confidence 999999999999999988 5566 56888888999999999999999999875 33321 1 122222334
Q ss_pred HhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 444 SRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
...|++++|.++++++. +++|++...+..++.+|.+.|++++|.+.+++..+.
T Consensus 519 ~~~~~~~eA~~~~~kAl----~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 519 QWKQDFIEAENLCEKAL----IIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHhhhHHHHHHHHHHHH----hcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45799999999988554 678999999999999999999999999999998774
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.9e-20 Score=189.13 Aligned_cols=302 Identities=15% Similarity=0.161 Sum_probs=201.9
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHH
Q 006672 171 ADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAG 250 (636)
Q Consensus 171 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 250 (636)
...+...|++++|...|+++.+.+ +.+..++..+...+.+.|++++|+.+++.+.......-
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~----------------- 103 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTR----------------- 103 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCH-----------------
Confidence 344567778888888888777654 44556677777777777777777777666543110000
Q ss_pred HHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCc
Q 006672 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330 (636)
Q Consensus 251 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 330 (636)
......+..++..|.+.|++++|..+|+++.+.. +++..++..++..+...|++++|.+.++.+.+.+..+.
T Consensus 104 -------~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 175 (389)
T PRK11788 104 -------EQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSL 175 (389)
T ss_pred -------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcc
Confidence 0001234444555555555555555555554431 23344455555555555555555555555544331111
Q ss_pred ----hhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC--HHHHH
Q 006672 331 ----GAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD--GTVFL 401 (636)
Q Consensus 331 ----~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~ 401 (636)
...+..+...+.+.|++++|...|+++.+ .+...+..+...|.+.|++++|+++|+++.+. .|+ ..++.
T Consensus 176 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~ 253 (389)
T PRK11788 176 RVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ--DPEYLSEVLP 253 (389)
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--ChhhHHHHHH
Confidence 12345566677778888888888887664 24557778888899999999999999999874 344 45678
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 006672 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIY 481 (636)
Q Consensus 402 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~ 481 (636)
.+..+|...|++++|.+.++++.+ ..|+...+..++..+.+.|++++|.++++++. +..|++. .+..+...+
T Consensus 254 ~l~~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l----~~~P~~~-~~~~l~~~~ 325 (389)
T PRK11788 254 KLMECYQALGDEAEGLEFLRRALE---EYPGADLLLALAQLLEEQEGPEAAQALLREQL----RRHPSLR-GFHRLLDYH 325 (389)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHH----HhCcCHH-HHHHHHHHh
Confidence 888899999999999999999885 35777777889999999999999999998665 4478654 565556555
Q ss_pred HH---cCChhHHHHHHHHHHhCCCccCCee
Q 006672 482 AA---EGRWKDVARVRTLMQRRSIKKDPGW 508 (636)
Q Consensus 482 ~~---~g~~~~A~~~~~~m~~~g~~~~~~~ 508 (636)
.. .|+.+++..++++|.+++++++|.+
T Consensus 326 ~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 326 LAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred hhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 53 5689999999999999999999853
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-19 Score=186.49 Aligned_cols=297 Identities=13% Similarity=0.123 Sum_probs=222.1
Q ss_pred HHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCC---hhhHHHHHHHHHhc
Q 006672 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES---VLLWNVLINGCSKI 212 (636)
Q Consensus 136 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~ 212 (636)
...+...|+++.|...|..+++.+ +.+..++..+...|.+.|++++|..+++.+...+..++ ...+..+...|.+
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~- 119 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK- 119 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH-
Confidence 334567899999999999999874 44567899999999999999999999999876431111 1234444444444
Q ss_pred CChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006672 213 GYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289 (636)
Q Consensus 213 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 289 (636)
.|++++|..+|+++.+ .+..+++.++..|.+.|++++|.+.++.+.+
T Consensus 120 ------------------------------~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 169 (389)
T PRK11788 120 ------------------------------AGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEK 169 (389)
T ss_pred ------------------------------CCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 4555555555555443 2355677777777777777777777777776
Q ss_pred CCCCCCH----HHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC--CC--
Q 006672 290 AGVRAND----FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--KD-- 361 (636)
Q Consensus 290 ~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-- 361 (636)
.+..+.. ..+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.|+++.+ |+
T Consensus 170 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 248 (389)
T PRK11788 170 LGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL 248 (389)
T ss_pred hcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH
Confidence 5432221 133455556677788888888888777654 44566777788888888888888888888774 33
Q ss_pred hhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHH
Q 006672 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441 (636)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 441 (636)
..+++.++.+|...|+.++|...++++.+ ..|+...+..+...+...|++++|..+++++.+ ..|+...+..++.
T Consensus 249 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~---~~P~~~~~~~l~~ 323 (389)
T PRK11788 249 SEVLPKLMECYQALGDEAEGLEFLRRALE--EYPGADLLLALAQLLEEQEGPEAAQALLREQLR---RHPSLRGFHRLLD 323 (389)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH---hCcCHHHHHHHHH
Confidence 34678889999999999999999999988 567777778888999999999999999998875 3688888888887
Q ss_pred HHHh---cCCchHHHHHHHHHHHHHhccCCCC
Q 006672 442 LLSR---VGQDSQGYQNSQNSFTKLLQLKPKH 470 (636)
Q Consensus 442 ~~~~---~g~~~~A~~~~~~~~~~~~~l~p~~ 470 (636)
.+.. .|+.++|..+++++.++.++.+|.+
T Consensus 324 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 324 YHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred HhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 7664 5689999999999999999888863
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5e-17 Score=180.58 Aligned_cols=439 Identities=10% Similarity=0.011 Sum_probs=294.8
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCCC---CCcchHHHHHHHHHhCCCchHHHHHHH
Q 006672 42 NSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP---KNLHIFNVLIRGLAENSHFQSCISHFV 118 (636)
Q Consensus 42 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 118 (636)
+++++|...+.++++.... ++.++..|...|...|+.++|+..+++... .|...+..+ ..+ +++.+|..+|+
T Consensus 58 Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L-a~i---~~~~kA~~~ye 132 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL-AAI---PVEVKSVTTVE 132 (987)
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH-HHh---ccChhHHHHHH
Confidence 6799999999999988644 478889999999999999999999987653 334444443 333 88899999999
Q ss_pred HhHHCCCCCCcccHHHHHHHH------HccCChHHHHHHHHHHHHhCCCCChhHHHHH-HHHHHhcCChHHHHHHHhhCC
Q 006672 119 FMLRLSVRPNRLTYPFVSKSV------ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHL-ADMYVQLGKTRGAFKVFDETP 191 (636)
Q Consensus 119 ~m~~~g~~p~~~t~~~ll~~~------~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~ 191 (636)
++.+. .|+..-...++... ....+.+++.+.++ .......|+..+.... ...|.+.|++++|++.+.++.
T Consensus 133 ~l~~~--~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 133 ELLAQ--QKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHHHh--CCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 99884 45543333222221 12233466666665 3333334445544444 788888888888888888888
Q ss_pred CCCCCCChhhHHHHHHHHHh-cCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCC-----Chh---
Q 006672 192 EKNKSESVLLWNVLINGCSK-IGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK-----GVV--- 262 (636)
Q Consensus 192 ~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~--- 262 (636)
+.+ +.+..-+..|..+|.+ .++ +++..+++...+.|+..+..+.+.|.+.|+.++|.+++++++.. +..
T Consensus 210 k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~ 287 (987)
T PRK09782 210 QQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWL 287 (987)
T ss_pred hcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHH
Confidence 776 5555556667777777 366 77777777655567778888888888888888888887776521 000
Q ss_pred --------------------------------------------------------------------------------
Q 006672 263 -------------------------------------------------------------------------------- 262 (636)
Q Consensus 263 -------------------------------------------------------------------------------- 262 (636)
T Consensus 288 ~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 367 (987)
T PRK09782 288 YLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARL 367 (987)
T ss_pred HHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHH
Confidence
Q ss_pred ----------hHHHHHHHHHhCCChHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHhc---------------------
Q 006672 263 ----------SWTAMINGFSQNGEAEKALAMFFQMLDA-G-VRANDFTVVSALSACAKV--------------------- 309 (636)
Q Consensus 263 ----------~~~~li~~~~~~g~~~~A~~l~~~m~~~-g-~~p~~~t~~~ll~~~~~~--------------------- 309 (636)
..-.+.-...+.|+.++|..+|+..... + ..++......++..+...
T Consensus 368 ~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 447 (987)
T PRK09782 368 LYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQ 447 (987)
T ss_pred HHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchh
Confidence 0000011123456666666666665441 0 111111222233333222
Q ss_pred ------------------------------------------CCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCH
Q 006672 310 ------------------------------------------GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347 (636)
Q Consensus 310 ------------------------------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 347 (636)
++.++|...+....... |+......+...+...|++
T Consensus 448 ~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~ 525 (987)
T PRK09782 448 RQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDY 525 (987)
T ss_pred HHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCH
Confidence 33444555444444332 3332333344445678888
Q ss_pred HHHHHHHhhccC--CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHhH
Q 006672 348 EAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMR 424 (636)
Q Consensus 348 ~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 424 (636)
++|...|+++.. ++...+..+...+.+.|+.++|...+++.++. .|+.. .+..+.......|++++|...+++..
T Consensus 526 eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL 603 (987)
T PRK09782 526 ATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPELALNDLTRSL 603 (987)
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 888888887654 34445667777788888888888888888874 35533 33334445556699999999999887
Q ss_pred hhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 425 FDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 425 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
+ +.|+...|..+..++.+.|++++|++.++++ ++++|+++..+..++.++...|++++|+..+++..+..
T Consensus 604 ~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~A----L~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 604 N---IAPSANAYVARATIYRQRHNVPAAVSDLRAA----LELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred H---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH----HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 5 5677889999999999999999999998854 47799999999999999999999999999999998853
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.1e-17 Score=181.22 Aligned_cols=404 Identities=10% Similarity=0.041 Sum_probs=242.1
Q ss_pred ChhHHHHHHHHhhcCCChHHHHHHhccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCC-cccHHHHHH
Q 006672 62 SSRITTQLISSASLHKSIDYALSIFDHFTP---KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN-RLTYPFVSK 137 (636)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 137 (636)
++....-.+......|+.++|++++.+..+ .+...+..+...+...|++++|+.+|++..+. .|+ ...+..+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 444444555566667777777777765542 23334666777777777777777777776653 343 333444555
Q ss_pred HHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHH
Q 006672 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRK 217 (636)
Q Consensus 138 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 217 (636)
.+...|++++|...++.+++.. +.+.. +..+..++...|+.++|...++++.+.. +.+...+..+...+...|..++
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHH
Confidence 5666777777777777776652 33444 6666666667777777777777666554 4455555556666666666666
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHH-----HhCCCh---HHHHHHHHHHHH
Q 006672 218 AVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF-----SQNGEA---EKALAMFFQMLD 289 (636)
Q Consensus 218 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~-----~~~g~~---~~A~~l~~~m~~ 289 (636)
|++.++.... ++.....+ .. .....++..+ ...+++ ++|++.++.+.+
T Consensus 169 Al~~l~~~~~-~p~~~~~l--------~~---------------~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~ 224 (765)
T PRK10049 169 ALGAIDDANL-TPAEKRDL--------EA---------------DAAAELVRLSFMPTRSEKERYAIADRALAQYDALEA 224 (765)
T ss_pred HHHHHHhCCC-CHHHHHHH--------HH---------------HHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHh
Confidence 6666665553 21100000 00 0001111111 111223 566666666664
Q ss_pred C-CCCCCHH-HHH----HHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCC--
Q 006672 290 A-GVRANDF-TVV----SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD-- 361 (636)
Q Consensus 290 ~-g~~p~~~-t~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-- 361 (636)
. ...|+.. .+. ..+.++...|++++|+..|+.+.+.+.+........+...|...|++++|...|+++...+
T Consensus 225 ~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~ 304 (765)
T PRK10049 225 LWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPET 304 (765)
T ss_pred hcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCC
Confidence 3 1122211 111 1123344556777777777777665421111122224566777777777777777665421
Q ss_pred -----hhcHHHHHHHHHHcCChHHHHHHHHHHhHcC-----------CCCCH---HHHHHHHHHHHhcCcHHHHHHHHHH
Q 006672 362 -----LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG-----------TEPDG---TVFLAILTACWYSGQVKLALNFFDS 422 (636)
Q Consensus 362 -----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~ 422 (636)
...+..+..++...|++++|+++++++.... -.|+. ..+..+...+...|+.++|++.+++
T Consensus 305 ~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~ 384 (765)
T PRK10049 305 IADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARE 384 (765)
T ss_pred CCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1234445556777788888888887777631 11232 2344556677788888888888888
Q ss_pred hHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 423 MRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 423 m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
+.. ..+.+...+..++.++...|++++|++.++++ ++++|+++..+..++..+...|+|++|..+++++.+.
T Consensus 385 al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~a----l~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 385 LAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKA----EVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 875 23445778888888888888888888888744 4668888888888888888888888888888888774
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.1e-17 Score=177.36 Aligned_cols=347 Identities=11% Similarity=-0.004 Sum_probs=186.2
Q ss_pred hcCCChHHHHHHhccCCCC------CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHH
Q 006672 74 SLHKSIDYALSIFDHFTPK------NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147 (636)
Q Consensus 74 ~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 147 (636)
.+..+++.---.|...++. +..-.-.++..+.+.|++.+|+.+++........+ ...+..+..+....|+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHH
Confidence 3556666666666555421 22223345556666777777777777766643222 2233333344555677777
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC-
Q 006672 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP- 226 (636)
Q Consensus 148 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~- 226 (636)
|.+.++.+++.. +.+...+..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|...++++.
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 777777766653 3344556666666666677777766666665443 4445555556666666666666655554432
Q ss_pred -CCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006672 227 -KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305 (636)
Q Consensus 227 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 305 (636)
.|+. ...+..+ ..+...|++++|...++.+.+....++......+..+
T Consensus 173 ~~P~~------------------------------~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~ 221 (656)
T PRK15174 173 EVPPR------------------------------GDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDT 221 (656)
T ss_pred hCCCC------------------------------HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence 1111 1122122 1244455555555555555443222223333333444
Q ss_pred HHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHH----HHHHHhhccC---CChhcHHHHHHHHHHcCCh
Q 006672 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA----ASLVFGETKE---KDLLTWTAMIWGLAIHGRY 378 (636)
Q Consensus 306 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 378 (636)
+...|++++|...+..+.+.. +.+...+..+..+|...|++++ |...|++... .+...+..+...+...|++
T Consensus 222 l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 300 (656)
T PRK15174 222 LCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQN 300 (656)
T ss_pred HHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH
Confidence 555555555555555555443 3345555555566666666553 5555555443 2344566666666666666
Q ss_pred HHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCCh-hHHHHHHHHHHhcCCchHHHHHH
Q 006672 379 EQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV-KHHTVVVNLLSRVGQDSQGYQNS 456 (636)
Q Consensus 379 ~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~ 456 (636)
++|+..+++..+ ..|+ ...+..+..++...|++++|...++.+.. ..|+. ..+..+..++...|+.++|.+.+
T Consensus 301 ~eA~~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~---~~P~~~~~~~~~a~al~~~G~~deA~~~l 375 (656)
T PRK15174 301 EKAIPLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLAR---EKGVTSKWNRYAAAALLQAGKTSEAESVF 375 (656)
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 666666666665 3444 33444555566666666666666666653 23332 22333455566666666666666
Q ss_pred HHHH
Q 006672 457 QNSF 460 (636)
Q Consensus 457 ~~~~ 460 (636)
+++.
T Consensus 376 ~~al 379 (656)
T PRK15174 376 EHYI 379 (656)
T ss_pred HHHH
Confidence 6443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-17 Score=180.58 Aligned_cols=319 Identities=9% Similarity=-0.004 Sum_probs=239.1
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCC---CChHHHHHHHHHHHhcCCHH
Q 006672 171 ADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK---KNVASWVSLIDGFMRKGDLK 247 (636)
Q Consensus 171 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~ 247 (636)
+..+.+.|++++|+.+++...... +.+...+..++.+....|++++|++.|+++.. .+...+..+...+.+.|+++
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~ 127 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYA 127 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH
Confidence 334445555555555555554433 33344444444555556666666666655542 23445666666677777777
Q ss_pred HHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 006672 248 KAGELFEQMPE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324 (636)
Q Consensus 248 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 324 (636)
+|...|++... .+...|..++..+...|++++|...++++...... +...+..+ ..+...|++++|...+..+.+
T Consensus 128 ~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~ 205 (656)
T PRK15174 128 TVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLP 205 (656)
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHh
Confidence 77777776653 34678888999999999999999999988765322 23333333 347788999999999999887
Q ss_pred cCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHH----HHHHHHHHhHcCCCCC-
Q 006672 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQ----AIQYFKKMMYSGTEPD- 396 (636)
Q Consensus 325 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~- 396 (636)
....++......+...+.+.|+.++|...|++... .+...+..+...|...|++++ |+..|++..+ ..|+
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~ 283 (656)
T PRK15174 206 FFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDN 283 (656)
T ss_pred cCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCC
Confidence 65334455556667889999999999999998775 456788889999999999986 8999999998 6677
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHH
Q 006672 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYV 475 (636)
Q Consensus 397 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~ 475 (636)
...+..+...+...|++++|...+++..+ ..|+ ...+..+..+|.+.|++++|.+.++++. +.+|.++..+.
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al----~~~P~~~~~~~ 356 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAASDEFVQLA----REKGVTSKWNR 356 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH----HhCccchHHHH
Confidence 55888889999999999999999999985 3444 6678889999999999999999998655 56888777777
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 476 LLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 476 ~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
.++.++...|++++|...+++..+..
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 78899999999999999999987754
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-16 Score=172.86 Aligned_cols=243 Identities=14% Similarity=0.000 Sum_probs=200.4
Q ss_pred cCChHHHHHHHhhCCCC------ChHHHHHHHHHHHhcCCHHHHHHHHhhCCCC--C-hhhHHHHHHHHHhCCChHHHHH
Q 006672 212 IGYLRKAVELFGMMPKK------NVASWVSLIDGFMRKGDLKKAGELFEQMPEK--G-VVSWTAMINGFSQNGEAEKALA 282 (636)
Q Consensus 212 ~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~ 282 (636)
.+++++|++.|+..... +...++.+...+...|++++|...|++..+. + ..+|..+...+...|++++|+.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 47899999999887742 3457888889999999999999999987643 3 5688889999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---
Q 006672 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--- 359 (636)
Q Consensus 283 l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--- 359 (636)
.|++..+.. +.+...+..+...+...|++++|...++..++.. +.+...+..+..++.+.|++++|...|++...
T Consensus 387 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P 464 (615)
T TIGR00990 387 DFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP 464 (615)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 999998763 4467788888999999999999999999999875 56778888899999999999999999998765
Q ss_pred CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCH-HH-------HHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC
Q 006672 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG-TV-------FLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431 (636)
Q Consensus 360 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t-------~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 431 (636)
.+...|+.+...+...|++++|++.|++..+ +.|+. .+ ++..+..+...|++++|.+++++..+ +.|
T Consensus 465 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~---l~p 539 (615)
T TIGR00990 465 EAPDVYNYYGELLLDQNKFDEAIEKFDTAIE--LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI---IDP 539 (615)
T ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh---cCC
Confidence 4577899999999999999999999999988 44431 11 11122233446999999999999875 345
Q ss_pred C-hhHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 006672 432 S-VKHHTVVVNLLSRVGQDSQGYQNSQNSFT 461 (636)
Q Consensus 432 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 461 (636)
+ ...+..++.++.+.|++++|.+.|+++.+
T Consensus 540 ~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 540 ECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4 45788999999999999999999997653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-16 Score=177.55 Aligned_cols=407 Identities=10% Similarity=0.015 Sum_probs=272.9
Q ss_pred CCCCCCHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccC---CCCCcchHHHHH
Q 006672 25 PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF---TPKNLHIFNVLI 101 (636)
Q Consensus 25 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~---~~~~~~~~~~li 101 (636)
+.++.-...++.+..-.++.++|.+++....... +.+..++..+...+.+.|++++|..+|++. .+.+...+..+.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la 90 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLI 90 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3444445567788888888999999999988632 345567889999999999999999999984 456777888899
Q ss_pred HHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH
Q 006672 102 RGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTR 181 (636)
Q Consensus 102 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 181 (636)
..+...|++++|+..+++..+. .|+...+..+..++...|+.++|...++.+++.. +.+...+..+..++...|..+
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChH
Confidence 9999999999999999999875 4544337777778889999999999999999975 445666677888899999999
Q ss_pred HHHHHHhhCCCCCCCCCh------hhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCH---HHHHHH
Q 006672 182 GAFKVFDETPEKNKSESV------LLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDL---KKAGEL 252 (636)
Q Consensus 182 ~A~~~~~~m~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~---~~A~~~ 252 (636)
.|++.++.... .|+. .....++......+ ....+++ ++|+..
T Consensus 168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~--------------------------~~~~~r~~~ad~Al~~ 218 (765)
T PRK10049 168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPT--------------------------RSEKERYAIADRALAQ 218 (765)
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccc--------------------------cChhHHHHHHHHHHHH
Confidence 99999998774 2221 01111111111100 0111112 334444
Q ss_pred HhhCCC-----CCh-----hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 006672 253 FEQMPE-----KGV-----VSWTAMINGFSQNGEAEKALAMFFQMLDAGVR-ANDFTVVSALSACAKVGALEAGVRVHNY 321 (636)
Q Consensus 253 ~~~~~~-----~~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 321 (636)
++.+.+ |+. ......+..+...|++++|+..|+++.+.+.+ |+. ....+..++...|++++|...++.
T Consensus 219 ~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~ 297 (765)
T PRK10049 219 YDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTE 297 (765)
T ss_pred HHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHH
Confidence 443331 111 01111122334556666666666666655421 222 112234556666666777666666
Q ss_pred HHHcCCCC---chhHHHHHhhHHhhcCCHHHHHHHHhhccCC---------------C---hhcHHHHHHHHHHcCChHH
Q 006672 322 ISCNDFGL---KGAIGTALVDMYAKCGNIEAASLVFGETKEK---------------D---LLTWTAMIWGLAIHGRYEQ 380 (636)
Q Consensus 322 ~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------------~---~~~~~~li~~~~~~g~~~~ 380 (636)
+.+..... .......|..++...|++++|.++++.+.+. + ...+..+...+...|+.++
T Consensus 298 ~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~e 377 (765)
T PRK10049 298 LFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQ 377 (765)
T ss_pred HhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHH
Confidence 65432111 1233444555566667777777776665542 1 1234566777888899999
Q ss_pred HHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHH
Q 006672 381 AIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQN 458 (636)
Q Consensus 381 A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 458 (636)
|++.++++.. ..|+ ...+..+...+...|++++|++.+++... +.|+ ...+..++..+.+.|++++|+.++++
T Consensus 378 A~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~---l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ 452 (765)
T PRK10049 378 AEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEV---LEPRNINLEVEQAWTALDLQEWRQMDVLTDD 452 (765)
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---hCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999887 4565 55777788888899999999999998875 4455 66777777888899999999998885
Q ss_pred HHHHHhccCCCCchhH
Q 006672 459 SFTKLLQLKPKHPSSY 474 (636)
Q Consensus 459 ~~~~~~~l~p~~~~~~ 474 (636)
+. +..|+++.+.
T Consensus 453 ll----~~~Pd~~~~~ 464 (765)
T PRK10049 453 VV----AREPQDPGVQ 464 (765)
T ss_pred HH----HhCCCCHHHH
Confidence 54 5688776543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.3e-15 Score=160.18 Aligned_cols=417 Identities=11% Similarity=0.020 Sum_probs=301.8
Q ss_pred HhhcCCChHHHHHHhccCCCCCcc---hHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHH---HHHHHccCCh
Q 006672 72 SASLHKSIDYALSIFDHFTPKNLH---IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV---SKSVASLSLL 145 (636)
Q Consensus 72 ~~~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l---l~~~~~~~~~ 145 (636)
...+.|+++.|+..|++....++. ....++..+...|+.++|+..+++.. .|+...+..+ ...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence 457789999999998877633222 23377888888899999999888877 3444433333 3456677899
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC
Q 006672 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225 (636)
Q Consensus 146 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 225 (636)
+.|.++++.+++.. +.++.++..++..|...++.++|++.++++... .|+...+..++..+...++..+|++.++++
T Consensus 119 d~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 119 DQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 99999999998875 334667777888888999999999999988755 344444433433444456666688888888
Q ss_pred CC---CChHHHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhhH--HHHHHHHH---------hCCC---hHHHHHHHH
Q 006672 226 PK---KNVASWVSLIDGFMRKGDLKKAGELFEQMPEK---GVVSW--TAMINGFS---------QNGE---AEKALAMFF 285 (636)
Q Consensus 226 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~--~~li~~~~---------~~g~---~~~A~~l~~ 285 (636)
.+ .+...+..+...+.+.|-...|.++..+-+.. ...-| ...+.-.+ ...+ .+.|+.-++
T Consensus 196 l~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~ 275 (822)
T PRK14574 196 VRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQ 275 (822)
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence 73 35667788888888899888888888776521 00000 00011111 1122 344555555
Q ss_pred HHHH-CCCCCCH-H----HHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC
Q 006672 286 QMLD-AGVRAND-F----TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359 (636)
Q Consensus 286 ~m~~-~g~~p~~-~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 359 (636)
.+.. .+-.|.. . ...--+-++...++..++++.++.+...+.+....+-.++.++|...++.++|..+|..+..
T Consensus 276 ~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~ 355 (822)
T PRK14574 276 NLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY 355 (822)
T ss_pred HHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 5554 1222322 2 22345567788899999999999999888776677889999999999999999999998754
Q ss_pred C---------ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCC-----------CCC--HH-HHHHHHHHHHhcCcHHHH
Q 006672 360 K---------DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT-----------EPD--GT-VFLAILTACWYSGQVKLA 416 (636)
Q Consensus 360 ~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~--~~-t~~~ll~a~~~~g~~~~a 416 (636)
+ +......|.-+|...+++++|..+++++.+... .|| -. .+..++..+...|++.+|
T Consensus 356 ~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~A 435 (822)
T PRK14574 356 SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTA 435 (822)
T ss_pred ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHH
Confidence 2 222346788999999999999999999987311 133 22 344556778899999999
Q ss_pred HHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHH
Q 006672 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTL 496 (636)
Q Consensus 417 ~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 496 (636)
++.++.+.. .-+-+......+.+++...|+..+|++.++.+ ..++|++..+...++..+...|+|++|..+.+.
T Consensus 436 e~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a----~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~ 509 (822)
T PRK14574 436 QKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAV----ESLAPRSLILERAQAETAMALQEWHQMELLTDD 509 (822)
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----hhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 999999975 34557889999999999999999999999643 356999999999999999999999999999988
Q ss_pred HHhCC
Q 006672 497 MQRRS 501 (636)
Q Consensus 497 m~~~g 501 (636)
..+..
T Consensus 510 l~~~~ 514 (822)
T PRK14574 510 VISRS 514 (822)
T ss_pred HHhhC
Confidence 87743
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-15 Score=157.08 Aligned_cols=443 Identities=14% Similarity=0.093 Sum_probs=317.0
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCCCCC------cchHHHHHHHHHhCCCchHHHHHH
Q 006672 44 TKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN------LHIFNVLIRGLAENSHFQSCISHF 117 (636)
Q Consensus 44 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~ 117 (636)
...|.+++....+.. .-+|.+.+.|.+.|.-.|+++.+..+...+...+ ..+|--+.++|-..|++++|...|
T Consensus 252 ~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY 330 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY 330 (1018)
T ss_pred HHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 566666666666543 3477788888888888888888888776554222 235777888888888888888888
Q ss_pred HHhHHCCCCCCcccHHH--HHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC----ChHHHHHHHhhCC
Q 006672 118 VFMLRLSVRPNRLTYPF--VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLG----KTRGAFKVFDETP 191 (636)
Q Consensus 118 ~~m~~~g~~p~~~t~~~--ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~ 191 (636)
.+..+ ..||.+.++. +...+...|+++.+...|+.+.+.. +.+..+...|...|+..+ ..+.|..+..+..
T Consensus 331 ~~s~k--~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~ 407 (1018)
T KOG2002|consen 331 MESLK--ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVL 407 (1018)
T ss_pred HHHHc--cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH
Confidence 77665 3466554443 5567788888888888888888763 555666677777777665 5667777776666
Q ss_pred CCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC--------CCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCC----
Q 006672 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM--------PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK---- 259 (636)
Q Consensus 192 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---- 259 (636)
+.- +.|...|-.+...+-+..-+.. +.+|... ...-+...|.+...+...|+++.|...|+.....
T Consensus 408 ~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~ 485 (1018)
T KOG2002|consen 408 EQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV 485 (1018)
T ss_pred hcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh
Confidence 444 5577777777777655544332 4444333 2456678888888888899999888888876432
Q ss_pred ---Ch------hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCC
Q 006672 260 ---GV------VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF-TVVSALSACAKVGALEAGVRVHNYISCNDFGL 329 (636)
Q Consensus 260 ---~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 329 (636)
|. .+--.+...+-..++.+.|.+.|...... .|.-. .|..++......+...+|...+..+.... ..
T Consensus 486 ~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~ 562 (1018)
T KOG2002|consen 486 ANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SS 562 (1018)
T ss_pred cCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cC
Confidence 21 12333566667778888888998888875 34433 33334323334567888888888887644 56
Q ss_pred chhHHHHHhhHHhhcCCHHHHHHHHhhccC-----CChhcHHHHHHHHHHc------------CChHHHHHHHHHHhHcC
Q 006672 330 KGAIGTALVDMYAKCGNIEAASLVFGETKE-----KDLLTWTAMIWGLAIH------------GRYEQAIQYFKKMMYSG 392 (636)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~------------g~~~~A~~~~~~m~~~g 392 (636)
++.+++.+.+.|.+...+.-|.+-|..+.. +|+.+.-+|.+.|.+. +..++|+++|.+.++
T Consensus 563 np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~-- 640 (1018)
T KOG2002|consen 563 NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR-- 640 (1018)
T ss_pred CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--
Confidence 777778788888888888888886655543 3555555566654432 457889999999988
Q ss_pred CCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCc
Q 006672 393 TEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHP 471 (636)
Q Consensus 393 ~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~ 471 (636)
..| |...-+.+.-.++..|++.+|..+|.++++. ......+|-.+..+|..+|++-.|+++|+...++.. ..+++
T Consensus 641 ~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~--~~~~~ 716 (1018)
T KOG2002|consen 641 NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY--KKNRS 716 (1018)
T ss_pred cCcchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCCH
Confidence 444 3456677777888999999999999999862 234567888999999999999999999998887754 34577
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 472 SSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 472 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
.+...|+.++.+.|+|.+|.+.........
T Consensus 717 ~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 717 EVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 889999999999999999999998887754
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.6e-14 Score=154.81 Aligned_cols=419 Identities=9% Similarity=0.019 Sum_probs=314.6
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCCCCCcchHHHH---HHHHHhCCCchHHHHHH
Q 006672 41 SNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVL---IRGLAENSHFQSCISHF 117 (636)
Q Consensus 41 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~ 117 (636)
-|+...|...+.++++......+.++ .++..+...|+.++|+..+++...|+...+..+ ...+...|++++|+++|
T Consensus 47 ~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely 125 (822)
T PRK14574 47 AGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALW 125 (822)
T ss_pred CCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45589999999999987533223444 888999999999999999998886644444433 34677789999999999
Q ss_pred HHhHHCCCCCC-cccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCC
Q 006672 118 VFMLRLSVRPN-RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196 (636)
Q Consensus 118 ~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 196 (636)
+++.+. .|+ ...+..++..+...++.++|.+.++.+.+. .|+...+..++..+...++..+|++.++++.+.. +
T Consensus 126 ~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P 200 (822)
T PRK14574 126 QSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-P 200 (822)
T ss_pred HHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-C
Confidence 999985 454 455556677788999999999999999876 4555556555555555677767999999999886 6
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHhhCCC---CChH------HHHHHHHHH---H--hcCC---HHHHHHHHhhCCC-
Q 006672 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPK---KNVA------SWVSLIDGF---M--RKGD---LKKAGELFEQMPE- 258 (636)
Q Consensus 197 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~------~~~~li~~~---~--~~g~---~~~A~~~~~~~~~- 258 (636)
.+...+..+..++.+.|-...|+++..+-.. +... ....++..- . ...+ .+.|+.-++.+..
T Consensus 201 ~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~ 280 (822)
T PRK14574 201 TSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTR 280 (822)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhh
Confidence 6788889999999999999999999887652 1110 011111100 0 1112 3444444444432
Q ss_pred ----CCh-----hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcC---
Q 006672 259 ----KGV-----VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND--- 326 (636)
Q Consensus 259 ----~~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--- 326 (636)
|.. ...--.+-++...|+..++++.|+.|...|.+....+-..+..+|...+++++|..++..+....
T Consensus 281 ~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~ 360 (822)
T PRK14574 281 WGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKT 360 (822)
T ss_pred ccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccc
Confidence 211 12234567888999999999999999998876566688899999999999999999999997643
Q ss_pred --CCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCCh------------------hcHHHHHHHHHHcCChHHHHHHHH
Q 006672 327 --FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL------------------LTWTAMIWGLAIHGRYEQAIQYFK 386 (636)
Q Consensus 327 --~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------------------~~~~~li~~~~~~g~~~~A~~~~~ 386 (636)
.+++......|.-+|...+++++|..+++.+.+..+ .....++..+...|+..+|++.++
T Consensus 361 ~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le 440 (822)
T PRK14574 361 FRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLE 440 (822)
T ss_pred cCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 233444467889999999999999999998876111 123456777888999999999999
Q ss_pred HHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHh
Q 006672 387 KMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLL 464 (636)
Q Consensus 387 ~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 464 (636)
++.. ..|. ......+...+...|.+.+|++.++.... +.|+ .......+..+...|++++|..+.+ .++
T Consensus 441 ~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~---l~P~~~~~~~~~~~~al~l~e~~~A~~~~~----~l~ 511 (822)
T PRK14574 441 DLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVES---LAPRSLILERAQAETAMALQEWHQMELLTD----DVI 511 (822)
T ss_pred HHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh---hCCccHHHHHHHHHHHHhhhhHHHHHHHHH----HHH
Confidence 9988 5565 66888888999999999999999977764 4554 6677788888999999999999887 455
Q ss_pred ccCCCCchhH
Q 006672 465 QLKPKHPSSY 474 (636)
Q Consensus 465 ~l~p~~~~~~ 474 (636)
+..|+++.+-
T Consensus 512 ~~~Pe~~~~~ 521 (822)
T PRK14574 512 SRSPEDIPSQ 521 (822)
T ss_pred hhCCCchhHH
Confidence 7789887443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-14 Score=149.14 Aligned_cols=407 Identities=12% Similarity=0.069 Sum_probs=284.5
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCC-C-CcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHH
Q 006672 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR-P-NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168 (636)
Q Consensus 91 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 168 (636)
+.|++..|.|.+.|...|++..++.+...+...... + -..+|-.+.+++-..|+++.|...|-+..+.....-+..+-
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV 346 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence 456777777777777788888888887777653211 0 12335556677777888888888887776653222233445
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcC----ChHHHHHHHhhCCCC---ChHHHHHHHHHHH
Q 006672 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG----YLRKAVELFGMMPKK---NVASWVSLIDGFM 241 (636)
Q Consensus 169 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~---~~~~~~~li~~~~ 241 (636)
-|..+|.+.|+++.+...|+.+.... +.+..+...|...|+..+ ..++|..++.+...+ |...|-.+..+|-
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e 425 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLE 425 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 57788888888888888888777654 556667777777776664 456677776666643 4556666666665
Q ss_pred hcCC------HHHHHHHHhh-CCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC---CCCCCH------HHHHHHHHH
Q 006672 242 RKGD------LKKAGELFEQ-MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA---GVRAND------FTVVSALSA 305 (636)
Q Consensus 242 ~~g~------~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~------~t~~~ll~~ 305 (636)
...- +..|..++.. +....+...|.+...+...|++++|...|...... ...+|. .+--.+...
T Consensus 426 ~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 426 QTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 4433 2333333332 22345678899999999999999999999888654 122232 223334555
Q ss_pred HHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHH
Q 006672 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAI 382 (636)
Q Consensus 306 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 382 (636)
.-..++.+.|.++|..+++.. |.-+..|-.|+.+.-..++..+|...+..+.. .++..|+.+...|.....+..|.
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~ 584 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAK 584 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccc
Confidence 567789999999999998764 44455555555455556778889988888775 57778888888998888888888
Q ss_pred HHHHHHhHc-CCCCCHHHHHHHHHHHHh------------cCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCc
Q 006672 383 QYFKKMMYS-GTEPDGTVFLAILTACWY------------SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQD 449 (636)
Q Consensus 383 ~~~~~m~~~-g~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~ 449 (636)
+-|+...+. ...+|..+..+|.+.|.. .+..++|+++|.++.+ .-+.+...-+.++-.++..|++
T Consensus 585 k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~ 662 (1018)
T KOG2002|consen 585 KKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRF 662 (1018)
T ss_pred cHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCc
Confidence 877766553 233677777677665542 2457888888888874 2345677778899999999999
Q ss_pred hHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCccC
Q 006672 450 SQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505 (636)
Q Consensus 450 ~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~ 505 (636)
.+|.++|.+..+... +++.+|..++.+|...|+|..|+++|+...+.-.+++
T Consensus 663 ~~A~dIFsqVrEa~~----~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~ 714 (1018)
T KOG2002|consen 663 SEARDIFSQVREATS----DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKN 714 (1018)
T ss_pred hHHHHHHHHHHHHHh----hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 999999998887643 3667999999999999999999999998877655433
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-13 Score=130.98 Aligned_cols=294 Identities=14% Similarity=0.137 Sum_probs=226.7
Q ss_pred CHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhh--cCCCh-------------------------HHH
Q 006672 30 TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSAS--LHKSI-------------------------DYA 82 (636)
Q Consensus 30 ~~~~~~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~--~~g~~-------------------------~~A 82 (636)
+...++.++. .+.+..+.-++++|...|.+.++.+--.|...-+ ...++ +-|
T Consensus 118 ~E~nL~kmIS-~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA 196 (625)
T KOG4422|consen 118 TENNLLKMIS-SREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA 196 (625)
T ss_pred chhHHHHHHh-hcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHH
Confidence 3344444442 3448889999999999998888877666665422 11111 112
Q ss_pred HHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCC
Q 006672 83 LSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY 162 (636)
Q Consensus 83 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 162 (636)
. ++-+..++...++..||.++++--..+.|.++|++-.....+.+..+||.+|.+-+- ..++.+..+|+.....|
T Consensus 197 d-L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 197 D-LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTP 271 (625)
T ss_pred H-HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCC
Confidence 2 333344567789999999999999999999999999988888999999999987653 34488999999999999
Q ss_pred ChhHHHHHHHHHHhcCChHHHH----HHHhhCCCCCCCCChhhHHHHHHHHHhcCChHH-HHHHHhhCC-----------
Q 006672 163 DAFVRVHLADMYVQLGKTRGAF----KVFDETPEKNKSESVLLWNVLINGCSKIGYLRK-AVELFGMMP----------- 226 (636)
Q Consensus 163 ~~~~~~~li~~~~~~g~~~~A~----~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~----------- 226 (636)
|.+|+|+++....+.|+++.|+ +++.+|++.|+.|...+|..+|..+.+.++..+ |..++.++.
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~ 351 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPI 351 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCC
Confidence 9999999999999999887665 567889999999999999999999999998755 444444443
Q ss_pred -CCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-----------hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 006672 227 -KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG-----------VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294 (636)
Q Consensus 227 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 294 (636)
..|...+...+..+.+..+.+-|..+-.-....+ ..-|..+....++....+.-+.+|..|.-.-.-|
T Consensus 352 ~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p 431 (625)
T KOG4422|consen 352 TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFP 431 (625)
T ss_pred CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecC
Confidence 2345567777788888888888888766554321 2346667778888888899999999998877788
Q ss_pred CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCC
Q 006672 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329 (636)
Q Consensus 295 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 329 (636)
+..+...++++....+.++-..+++..++..|...
T Consensus 432 ~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~ 466 (625)
T KOG4422|consen 432 HSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTF 466 (625)
T ss_pred CchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhh
Confidence 88999999999888888988888888887766433
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-11 Score=122.64 Aligned_cols=455 Identities=12% Similarity=0.068 Sum_probs=340.0
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHh
Q 006672 44 TKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT---PKNLHIFNVLIRGLAENSHFQSCISHFVFM 120 (636)
Q Consensus 44 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 120 (636)
.+.|+-++.+..+.= +.+. -|.-+|++..-++.|..+++... +.+...|-+-...=-.+|+.+....+..+-
T Consensus 392 ~~darilL~rAvecc-p~s~----dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rg 466 (913)
T KOG0495|consen 392 PEDARILLERAVECC-PQSM----DLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRG 466 (913)
T ss_pred hHHHHHHHHHHHHhc-cchH----HHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 455666666666541 1122 34445667777888888887544 668888877766667789888888887653
Q ss_pred ----HHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCChHHHHHHHhhCCCCC
Q 006672 121 ----LRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD--AFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194 (636)
Q Consensus 121 ----~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 194 (636)
...|+..+...|-.=..+|-..|..-.+..+....+..|++.. -.+|+.-...|.+.+.++-|+.+|....+--
T Consensus 467 l~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf 546 (913)
T KOG0495|consen 467 LSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF 546 (913)
T ss_pred HHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc
Confidence 4578888999998888889999999999999998888887543 4588888899999999999999998776544
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHhhCCC---CChHHHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhhHHHHH
Q 006672 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPK---KNVASWVSLIDGFMRKGDLKKAGELFEQMPEK---GVVSWTAMI 268 (636)
Q Consensus 195 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li 268 (636)
+.+...|......--..|..++...+|++... .....|-....-+-..|++..|..++.+.-+. +...|-+-+
T Consensus 547 -p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaav 625 (913)
T KOG0495|consen 547 -PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAV 625 (913)
T ss_pred -cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 56778888888887888999999999988873 34456666777788889999999988876532 456788888
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHH
Q 006672 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348 (636)
Q Consensus 269 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 348 (636)
..-..+..+++|..+|.+.... .|+...|.--++.---.++.++|.+++++.++. ++.-...|..+.+.+-+.++++
T Consensus 626 Kle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie 702 (913)
T KOG0495|consen 626 KLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIE 702 (913)
T ss_pred HHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHH
Confidence 8889999999999999988764 566666666556566678899999999988865 3666778888999999999999
Q ss_pred HHHHHHhhccC--C-ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHh
Q 006672 349 AASLVFGETKE--K-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425 (636)
Q Consensus 349 ~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 425 (636)
.|.+.|..-.+ | .+..|-.+...--+.|+.-+|..++++.+-.+.+ |...|...+..-.+.|+.+.|..+..+..+
T Consensus 703 ~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 703 MAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred HHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999987765 4 3457888887777888999999999998874322 466888888988999999999988887775
Q ss_pred hcCCCCChhHHHHH------------------------------HHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHH
Q 006672 426 DYFIEPSVKHHTVV------------------------------VNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYV 475 (636)
Q Consensus 426 ~~~~~p~~~~~~~l------------------------------~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~ 475 (636)
+. +.+...|.-- ..++-...+++.|.+.|+ +.++.+|++..+|.
T Consensus 782 ec--p~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~----Ravk~d~d~GD~wa 855 (913)
T KOG0495|consen 782 EC--PSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFE----RAVKKDPDNGDAWA 855 (913)
T ss_pred hC--CccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHH----HHHccCCccchHHH
Confidence 32 2333333333 333344444555555555 34467888888888
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCccCCeeeEEEECCE
Q 006672 476 LLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGH 516 (636)
Q Consensus 476 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~i~~~~~ 516 (636)
-+...+.+.|.-++-.+++.+... ..|..|..|..+.+.
T Consensus 856 ~fykfel~hG~eed~kev~~~c~~--~EP~hG~~W~avSK~ 894 (913)
T KOG0495|consen 856 WFYKFELRHGTEEDQKEVLKKCET--AEPTHGELWQAVSKD 894 (913)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhc--cCCCCCcHHHHHhhh
Confidence 888888888887777788777766 345556666554443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.3e-11 Score=125.59 Aligned_cols=492 Identities=13% Similarity=0.068 Sum_probs=313.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhc---cCCCCCcchHHHHHHHHHhCCCc
Q 006672 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFD---HFTPKNLHIFNVLIRGLAENSHF 110 (636)
Q Consensus 34 ~~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~---~~~~~~~~~~~~li~~~~~~g~~ 110 (636)
.+..+.+-|++++|..++.++++.. +.....|..|...|-..|+.+++...+= .+.+.|...|-.+..-..+.|++
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccH
Confidence 4555666688999999999999985 3477889999999999999999998663 45577889999999999999999
Q ss_pred hHHHHHHHHhHHCCCCCCc-ccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHH----HHHHHHHhcCChHHHHH
Q 006672 111 QSCISHFVFMLRLSVRPNR-LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV----HLADMYVQLGKTRGAFK 185 (636)
Q Consensus 111 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~li~~~~~~g~~~~A~~ 185 (636)
.+|.-.|.+..+. .|+. ..+--=...|-+.|+...|..-|.++.....+.|..-.- ..+..|...++-+.|.+
T Consensus 224 ~qA~~cy~rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 224 NQARYCYSRAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999884 3444 222233455778899999999999999875433332222 24556667777799999
Q ss_pred HHhhCCCCC-CCCChhhHHHHHHHHHhcCChHHHHHHHhhCCC-------------------------------CChHH-
Q 006672 186 VFDETPEKN-KSESVLLWNVLINGCSKIGYLRKAVELFGMMPK-------------------------------KNVAS- 232 (636)
Q Consensus 186 ~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------------------------------~~~~~- 232 (636)
.++.....+ -..+...++.++..|.+...++.|......+.. .+..+
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 888776521 144566788899999999999998887766641 11222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006672 233 WVSLIDGFMRKGDLKKAGELFEQMP----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308 (636)
Q Consensus 233 ~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 308 (636)
...+.-...+.+...+++.-|-.-. ..++..|..+..+|.+.|++.+|+.+|..+.....--+...|-.+..++-.
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 1111112223344444444333222 223556777888888888888888888888876545566778888888888
Q ss_pred cCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChh-----cH-------HHHHHHHHHcC
Q 006672 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL-----TW-------TAMIWGLAIHG 376 (636)
Q Consensus 309 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~-------~~li~~~~~~g 376 (636)
.|..++|.+.|+.++... |.+..+-..|...|.+.|+.++|.+++..+..||.. .| -.....+.+.|
T Consensus 462 l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred HhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 888888888888888765 556667777888888888888888888887655411 11 11223344455
Q ss_pred ChHHHHHHHHHHhHcC---------------------------------------------------------------C
Q 006672 377 RYEQAIQYFKKMMYSG---------------------------------------------------------------T 393 (636)
Q Consensus 377 ~~~~A~~~~~~m~~~g---------------------------------------------------------------~ 393 (636)
+.++=+.+-..|+..+ +
T Consensus 541 k~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~L 620 (895)
T KOG2076|consen 541 KREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGL 620 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccC
Confidence 5544333322222110 0
Q ss_pred CCCH--HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCCh----hHHHHHHHHHHhcCCchHHHHHHHHHHHH-Hhcc
Q 006672 394 EPDG--TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV----KHHTVVVNLLSRVGQDSQGYQNSQNSFTK-LLQL 466 (636)
Q Consensus 394 ~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~l 466 (636)
.-+. ..+.-++.+..+.+++++|..+...+...+-...+. ..-.+++.+....+++.+|.+.++.+..+ .+-.
T Consensus 621 siddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~ 700 (895)
T KOG2076|consen 621 SIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYL 700 (895)
T ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhh
Confidence 0010 123445556677788888888777766432222222 22344555666778888888887766544 2223
Q ss_pred CCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCeeeEEEECCEEEEecCCCcccHHHHH
Q 006672 467 KPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHKLAKEIH 532 (636)
Q Consensus 467 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~i~~~~~~~~~~~~~~~~~~~i~ 532 (636)
+|--...|+...+...+.|+-.--.+.+...... .|+.....+.+.+ .+.|..+.++.+...|
T Consensus 701 ~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~--~~~~~~~l~~i~g-h~~~~~~s~~~Al~~y 763 (895)
T KOG2076|consen 701 DVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVK--NKDDTPPLALIYG-HNLFVNASFKHALQEY 763 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CccCCcceeeeec-hhHhhccchHHHHHHH
Confidence 4444556665566666666433333333332221 2221112233333 3346666677776655
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4e-11 Score=114.45 Aligned_cols=391 Identities=13% Similarity=0.102 Sum_probs=258.1
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHH--ccCChHHH-HHHHHHHHHhCCCCChhHHHH
Q 006672 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA--SLSLLSLG-RGLHCLIVKSGVEYDAFVRVH 169 (636)
Q Consensus 93 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~ 169 (636)
.+++-|.|+.. ...|...++.-+|+.|...|+..+...-..|++..+ +..+..-+ .+-|-.|.+.| +....+|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW-- 190 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW-- 190 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--
Confidence 45567777764 456789999999999999987766665555555432 33333322 23333444443 2222333
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCC----CChHHHHHHHHHHHhcCC
Q 006672 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK----KNVASWVSLIDGFMRKGD 245 (636)
Q Consensus 170 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~ 245 (636)
+.|.+.+ ++-+.. +.+..++..||.++++--..+.|.+++++... .+..++|.+|.+-.-.-+
T Consensus 191 ------K~G~vAd---L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~ 257 (625)
T KOG4422|consen 191 ------KSGAVAD---LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG 257 (625)
T ss_pred ------ccccHHH---HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc
Confidence 3455444 444444 66778889999999988888899998888763 466777877765443333
Q ss_pred HHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHH-HHHHHH
Q 006672 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK----ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA-GVRVHN 320 (636)
Q Consensus 246 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~-a~~~~~ 320 (636)
-+-.-++..+-..||..|+|+++++..+.|+++. |++++.+|.+-|+.|...+|..+|....+.++..+ +..+..
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHH
Confidence 2222222222236889999999999999997764 56788889999999999999999988888777644 333333
Q ss_pred HHH----HcCC----CCchhHHHHHhhHHhhcCCHHHHHHHHhhccCC-----------ChhcHHHHHHHHHHcCChHHH
Q 006672 321 YIS----CNDF----GLKGAIGTALVDMYAKCGNIEAASLVFGETKEK-----------DLLTWTAMIWGLAIHGRYEQA 381 (636)
Q Consensus 321 ~~~----~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A 381 (636)
++. ...+ +.|...+..-++.+....+.+-|.++-.-.... ...-|..+....++....+.-
T Consensus 338 dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~ 417 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVT 417 (625)
T ss_pred HHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 2222 234445566677777888888888876554431 123455677778888889999
Q ss_pred HHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCch--HH-------
Q 006672 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDS--QG------- 452 (636)
Q Consensus 382 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~--~A------- 452 (636)
+..|+.|+-.-+-|+..+...+++|....|.++-.-++|..++. +|..-......-+...+++..-.. -+
T Consensus 418 ~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~-~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~ 496 (625)
T KOG4422|consen 418 LKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE-YGHTFRSDLREEILMLLARDKLHPLTPEREQLQVA 496 (625)
T ss_pred HHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH-hhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHH
Confidence 99999999888889999999999999999999999999998884 775555444444555555544111 11
Q ss_pred -----HHHHH---HHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 006672 453 -----YQNSQ---NSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502 (636)
Q Consensus 453 -----~~~~~---~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 502 (636)
..+++ ....+..+.+ -.+...+..+-.+.+.|+.++|.+++....+.+-
T Consensus 497 ~ak~aad~~e~~e~~~~R~r~~~-~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~ 553 (625)
T KOG4422|consen 497 FAKCAADIKEAYESQPIRQRAQD-WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHN 553 (625)
T ss_pred HHHHHHHHHHHHHhhHHHHHhcc-CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCC
Confidence 11111 1111111111 1345677788889999999999999999876653
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.7e-09 Score=108.75 Aligned_cols=359 Identities=11% Similarity=0.084 Sum_probs=259.7
Q ss_pred HHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhh----CCCCCCCCChhhHHHHHHHHHhcCC
Q 006672 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE----TPEKNKSESVLLWNVLINGCSKIGY 214 (636)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~~~~~~~~~~~~li~~~~~~g~ 214 (636)
+++..-++.|+.++....+. ++.+..+|.+-...=-..|+.+...+++++ +...|+.-+...|-.=...|-..|.
T Consensus 416 larLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ags 494 (913)
T KOG0495|consen 416 LARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGS 494 (913)
T ss_pred HHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCC
Confidence 33344444444444444433 344444444444444444554444444432 3334444444444444444444444
Q ss_pred hHHHHHHHhhCC------CCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHH
Q 006672 215 LRKAVELFGMMP------KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK---GVVSWTAMINGFSQNGEAEKALAMFF 285 (636)
Q Consensus 215 ~~~A~~~~~~m~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~ 285 (636)
.-.+..+.+... +.--.+|..-.+.|.+.+.++-|..+|....+- +-..|...+..--..|..+.-..+|+
T Consensus 495 v~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allq 574 (913)
T KOG0495|consen 495 VITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQ 574 (913)
T ss_pred hhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 444444433333 122346777778888888888888888876642 35678887777778899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC--CChh
Q 006672 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--KDLL 363 (636)
Q Consensus 286 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~ 363 (636)
+.... ++-....+.......-..|+...|+.++..+.+.. +.+..++.+-+.......+++.|+.+|.+... ++..
T Consensus 575 kav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeR 652 (913)
T KOG0495|consen 575 KAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTER 652 (913)
T ss_pred HHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcch
Confidence 99876 34444555556666677899999999999999876 56888999999999999999999999998775 6777
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHH
Q 006672 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442 (636)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 442 (636)
.|.--+...--.++.++|++++++.++ .-|+ ...|..+.+.+-+.++++.|...|..-.+ ..+-.+..|-.+.++
T Consensus 653 v~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakl 728 (913)
T KOG0495|consen 653 VWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKL 728 (913)
T ss_pred hhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHH
Confidence 887777777778999999999999998 7788 55888888899999999999999987653 344457789999999
Q ss_pred HHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCeeeE
Q 006672 443 LSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSY 510 (636)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~ 510 (636)
=-+.|.+-.|..+++++. -.+|+|...|...+.+-.+.|..+.|..+..++.+.- |..|.-|
T Consensus 729 eEk~~~~~rAR~ildrar----lkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec--p~sg~LW 790 (913)
T KOG0495|consen 729 EEKDGQLVRARSILDRAR----LKNPKNALLWLESIRMELRAGNKEQAELLMAKALQEC--PSSGLLW 790 (913)
T ss_pred HHHhcchhhHHHHHHHHH----hcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccchhH
Confidence 999999999999998665 4589999999999999999999999999988887743 4444444
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-14 Score=141.98 Aligned_cols=251 Identities=14% Similarity=0.185 Sum_probs=110.3
Q ss_pred HHHHHhcCCHHHHHHHHhhC-C----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006672 237 IDGFMRKGDLKKAGELFEQM-P----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311 (636)
Q Consensus 237 i~~~~~~g~~~~A~~~~~~~-~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 311 (636)
...+.+.|++++|++++++. . ..|...|..+...+...++++.|...++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 44455556666666666322 1 123445555555666666777777777777654322 33444444444 56667
Q ss_pred cHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhcc-----CCChhcHHHHHHHHHHcCChHHHHHHHH
Q 006672 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK-----EKDLLTWTAMIWGLAIHGRYEQAIQYFK 386 (636)
Q Consensus 312 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~ 386 (636)
+++|.++.....+.. +++..+..++..+.+.++++++.++++.+. +.+...|..+...+.+.|+.++|++.++
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777776666554432 445556667777777788888777777644 2466788888899999999999999999
Q ss_pred HHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Q 006672 387 KMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQ 465 (636)
Q Consensus 387 ~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 465 (636)
+.++ ..|+ ......++..+...|+.+++.++++...+. .+.++..+..+..+|...|+.++|...++++. +
T Consensus 171 ~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~----~ 242 (280)
T PF13429_consen 171 KALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKAL----K 242 (280)
T ss_dssp HHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH----H
T ss_pred HHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhccccccccccccccccc----c
Confidence 9999 6776 567888889999999999999999988753 25677788999999999999999999999654 5
Q ss_pred cCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 466 LKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 466 l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
.+|+|+.....++.++...|+.++|.+++++..+
T Consensus 243 ~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 243 LNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HSTT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccccc
Confidence 6899999999999999999999999999887643
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-11 Score=118.07 Aligned_cols=380 Identities=14% Similarity=0.042 Sum_probs=249.1
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHHCCCCCC-cccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCC-hhHHHHHHHHH
Q 006672 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRPN-RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD-AFVRVHLADMY 174 (636)
Q Consensus 97 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~ 174 (636)
+.....-|-++|.+++|+..|.+..+ +.|| ..-|...-.+|...|+++...+--...++. .|+ +..+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 34445567778888888888888887 4577 666677777777888888877776666654 333 33455556666
Q ss_pred HhcCChHHHHHH------HhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCC---------------------
Q 006672 175 VQLGKTRGAFKV------FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK--------------------- 227 (636)
Q Consensus 175 ~~~g~~~~A~~~------~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------------------- 227 (636)
-..|++++|+.= ++...... -..++.-..+.--..++.+-+..=+.
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s-------~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~ 266 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNAS-------IEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK 266 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccch-------hHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc
Confidence 677777766531 11111100 00011000000001112222221011
Q ss_pred ---------CChHHHHHHHHHHHhc-CCHHHHHHHHhhC-------CCCC---------hhhHHHHHHHHHhCCChHHHH
Q 006672 228 ---------KNVASWVSLIDGFMRK-GDLKKAGELFEQM-------PEKG---------VVSWTAMINGFSQNGEAEKAL 281 (636)
Q Consensus 228 ---------~~~~~~~~li~~~~~~-g~~~~A~~~~~~~-------~~~~---------~~~~~~li~~~~~~g~~~~A~ 281 (636)
.|...-..+=..+... ..+..|...+.+- ...+ ..+.+.-..-+.-.|+.-.|.
T Consensus 267 ~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~ 346 (606)
T KOG0547|consen 267 PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQ 346 (606)
T ss_pred ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhh
Confidence 1111111111111111 1233333333221 1111 223333333455678999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC--
Q 006672 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-- 359 (636)
Q Consensus 282 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 359 (636)
..|+..+.....++.. |.-+..+|....+.++....|....+.+ +.++.+|..-..++.-.+++++|..=|++...
T Consensus 347 ~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~ 424 (606)
T KOG0547|consen 347 EDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD 424 (606)
T ss_pred hhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999865444432 7777778999999999999999999877 67888898888999999999999999998876
Q ss_pred -CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-----
Q 006672 360 -KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS----- 432 (636)
Q Consensus 360 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----- 432 (636)
.++..|--+..+..+.+++++++..|++..+ -.|+ +..|+.....+...++++.|.+.|+..+. ++|+
T Consensus 425 pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---LE~~~~~~~ 499 (606)
T KOG0547|consen 425 PENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---LEPREHLII 499 (606)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---hcccccccc
Confidence 3566777777777888999999999999998 4566 67899999999999999999999998874 4444
Q ss_pred --hhHH--HHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 433 --VKHH--TVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 433 --~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
+..+ -.++-.- =.+++..|.++++ +.++++|+...+|.+|+..-.+.|+.++|+++|++...
T Consensus 500 v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~----KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 500 VNAAPLVHKALLVLQ-WKEDINQAENLLR----KAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccchhhhhhhHhhhc-hhhhHHHHHHHHH----HHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2222 1222111 2378888888887 45589999999999999999999999999999997654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.54 E-value=6e-12 Score=130.96 Aligned_cols=328 Identities=12% Similarity=0.119 Sum_probs=233.2
Q ss_pred cCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC---CCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 006672 177 LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM---PKKNVASWVSLIDGFMRKGDLKKAGELF 253 (636)
Q Consensus 177 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~~~~~~~~li~~~~~~g~~~~A~~~~ 253 (636)
.|++++|.+++.++.... +.+...|.+|...|-+.|+.+++...+-.. .+.|...|..+.....+.|.++.|.-.|
T Consensus 152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 388888888888887666 677788888888888888888887765333 3566778888888888888888888888
Q ss_pred hhCCCCChh---hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCcHHHHHHHHHHHH-c
Q 006672 254 EQMPEKGVV---SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF----TVVSALSACAKVGALEAGVRVHNYISC-N 325 (636)
Q Consensus 254 ~~~~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~-~ 325 (636)
.+..+.+.. ..---+..|.+.|+...|++-|.++.....+.|.. +.-.++..+...++-+.|.+.++.... .
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 877654432 22233567888888888888888888763222222 223345555566666777777776665 2
Q ss_pred CCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC----C----------------------ChhcHH----HHHHHHHHc
Q 006672 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE----K----------------------DLLTWT----AMIWGLAIH 375 (636)
Q Consensus 326 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~----------------------~~~~~~----~li~~~~~~ 375 (636)
+-..+...++.++.+|.+...++.|......+.. + +..+|. -+.-++...
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L 390 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHL 390 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcc
Confidence 2345566677888888888888877766544332 1 111121 122334444
Q ss_pred CChHHHHHHHHHHhHcCCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHH
Q 006672 376 GRYEQAIQYFKKMMYSGTEPD--GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY 453 (636)
Q Consensus 376 g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 453 (636)
...+....+.....+..+.|+ ...|.-+..++...|.+.+|..+|..+.. ...--+...|--++.+|...|.+++|.
T Consensus 391 ~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~-~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 391 KERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN-REGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred cccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc-CccccchhhhHHHHHHHHHHhhHHHHH
Confidence 445555555555666665555 45888999999999999999999999985 323334778999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCeeeE
Q 006672 454 QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSY 510 (636)
Q Consensus 454 ~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~ 510 (636)
+.|+ +.+.+.|.+..+-.+|+.+|.+.|+.++|.+.++.|.--+-..-++|+|
T Consensus 470 e~y~----kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 470 EFYE----KVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHH----HHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 9998 4557899999999999999999999999999999886333222356666
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.1e-12 Score=128.66 Aligned_cols=281 Identities=11% Similarity=0.048 Sum_probs=134.0
Q ss_pred cCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCC--CChHHHH--HHHHHHHhcCCHHHHHHH
Q 006672 177 LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK--KNVASWV--SLIDGFMRKGDLKKAGEL 252 (636)
Q Consensus 177 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~--~li~~~~~~g~~~~A~~~ 252 (636)
.|+++.|++.+....+.. +.....|........+.|+++.|.+.+.++.+ |+..... .....+...|+++.|...
T Consensus 97 eGd~~~A~k~l~~~~~~~-~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA-EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 577777777776654321 11122222223334667777777777766653 2222222 224566666777777777
Q ss_pred HhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCC
Q 006672 253 FEQMPEK---GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329 (636)
Q Consensus 253 ~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 329 (636)
++++.+. +......+...|.+.|++++|.+++..+.+.+..++. ....+-.
T Consensus 176 l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~~------------------------- 229 (398)
T PRK10747 176 VDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLEQ------------------------- 229 (398)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHHH-------------------------
Confidence 6665532 3455666677777777777777777777765533222 1110000
Q ss_pred chhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHH
Q 006672 330 KGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406 (636)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 406 (636)
..+..++.......+.+...++++.++. .++.....+..++...|+.++|.+++++..+ ..||.... ++.+
T Consensus 230 --~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l~--~l~~ 303 (398)
T PRK10747 230 --QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERLV--LLIP 303 (398)
T ss_pred --HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHH--HHHh
Confidence 0111111111222223333333333332 2344444455555555555555555555544 22332111 1122
Q ss_pred HHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCC
Q 006672 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGR 486 (636)
Q Consensus 407 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~ 486 (636)
....++.+++.+..+...+ ..+-++..+.++..++.+.|++++|.+.|+++. +.+| +...+..|+.++.+.|+
T Consensus 304 ~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al----~~~P-~~~~~~~La~~~~~~g~ 376 (398)
T PRK10747 304 RLKTNNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAAL----KQRP-DAYDYAWLADALDRLHK 376 (398)
T ss_pred hccCCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH----hcCC-CHHHHHHHHHHHHHcCC
Confidence 2233555555555555543 112234444555555555555555555555332 3344 23334455555555555
Q ss_pred hhHHHHHHHHH
Q 006672 487 WKDVARVRTLM 497 (636)
Q Consensus 487 ~~~A~~~~~~m 497 (636)
.++|.+++++-
T Consensus 377 ~~~A~~~~~~~ 387 (398)
T PRK10747 377 PEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4e-12 Score=121.81 Aligned_cols=429 Identities=13% Similarity=0.103 Sum_probs=203.4
Q ss_pred hHHHHHHHHHHHHhCCCCChhH-HHHHHHHhhcCCChHHHHHHhc----cCCCCC----cchHHHHHHHHHhCCCchHHH
Q 006672 44 TKQLRQIHAQIILHNLFASSRI-TTQLISSASLHKSIDYALSIFD----HFTPKN----LHIFNVLIRGLAENSHFQSCI 114 (636)
Q Consensus 44 ~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~f~----~~~~~~----~~~~~~li~~~~~~g~~~~A~ 114 (636)
..+|...++-+++....|+.-. --.+-+.+.+...+..|++.+. +.|.-+ +...|.+.-.+.+.|.++.|+
T Consensus 217 ~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dai 296 (840)
T KOG2003|consen 217 TAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAI 296 (840)
T ss_pred HHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhH
Confidence 6677777777777766555432 2234456777788888887764 333222 223444445677888888888
Q ss_pred HHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCC------------ChhHHHH-----HHHHHHhc
Q 006672 115 SHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY------------DAFVRVH-----LADMYVQL 177 (636)
Q Consensus 115 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~------------~~~~~~~-----li~~~~~~ 177 (636)
..|+...+. .|+..+--.|+-.+...|+-+..++.|..|+.....+ +....|. .+.-.-+.
T Consensus 297 nsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~ 374 (840)
T KOG2003|consen 297 NSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKE 374 (840)
T ss_pred hhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHh
Confidence 888887763 4776654445555556778888888888888654322 2222221 11222222
Q ss_pred CC--hHHHHHHHhhCCCCCCCCChh---------------------hHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHH
Q 006672 178 GK--TRGAFKVFDETPEKNKSESVL---------------------LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV 234 (636)
Q Consensus 178 g~--~~~A~~~~~~m~~~~~~~~~~---------------------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 234 (636)
+. .+++.-.--++..--+.|+-. .--.-...+.++|+++.|++++.-+...|..+-+
T Consensus 375 ~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~s 454 (840)
T KOG2003|consen 375 NKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTAS 454 (840)
T ss_pred hhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhH
Confidence 11 111111111111000011100 0112234577888888888888777755443322
Q ss_pred H----HHHHHHh--cCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006672 235 S----LIDGFMR--KGDLKKAGELFEQMPEKG---VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305 (636)
Q Consensus 235 ~----li~~~~~--~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 305 (636)
+ |...+.- -.++.+|...-+.....| ......-...-..+|++++|.+.|++.+...-.-....|+ +.-.
T Consensus 455 aaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt 533 (840)
T KOG2003|consen 455 AAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLT 533 (840)
T ss_pred HHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hccc
Confidence 2 2222111 123444444444333221 1111111122233455555555555554432111111121 1112
Q ss_pred HHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHH
Q 006672 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAI 382 (636)
Q Consensus 306 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 382 (636)
+-..|++++|.+.|-.+... +..+..+...+...|-...+...|.+++.+... .|+....-|...|-+.|+-..|.
T Consensus 534 ~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqaf 612 (840)
T KOG2003|consen 534 AEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAF 612 (840)
T ss_pred HHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhh
Confidence 33445555555544433221 122344444445555555555555555544332 34444555555555555555554
Q ss_pred HHHHHHhHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHH-HHHhcCCchHHHHHHHHHH
Q 006672 383 QYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN-LLSRVGQDSQGYQNSQNSF 460 (636)
Q Consensus 383 ~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~ 460 (636)
+.+-+--. ..| |..|...|..-|....-+++++++|++.. -+.|+..-|..|+. ++.|.|++..|.++|+..-
T Consensus 613 q~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaa---liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~h 687 (840)
T KOG2003|consen 613 QCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA---LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIH 687 (840)
T ss_pred hhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH---hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 44333222 222 23344444444444444555555555443 24555555544443 2334555555555555443
Q ss_pred HHHhccCCCCchhHHHHHHHHHHcC
Q 006672 461 TKLLQLKPKHPSSYVLLSNIYAAEG 485 (636)
Q Consensus 461 ~~~~~l~p~~~~~~~~l~~~~~~~g 485 (636)
++ -|.|....-.|..++...|
T Consensus 688 rk----fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 688 RK----FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred Hh----CccchHHHHHHHHHhcccc
Confidence 32 3555555555555555444
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.5e-10 Score=109.46 Aligned_cols=443 Identities=13% Similarity=0.117 Sum_probs=215.6
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHh
Q 006672 44 TKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT---PKNLHIFNVLIRGLAENSHFQSCISHFVFM 120 (636)
Q Consensus 44 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 120 (636)
...|++++++.+... ..+...|-..+.+=.++..+..|+.+|++.. ++--..|...+-.=-..|+...|.++|++-
T Consensus 89 ~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW 167 (677)
T KOG1915|consen 89 IQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERW 167 (677)
T ss_pred HHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 445555666555543 3344555555555555555555555555332 121123333333333345555555555444
Q ss_pred HHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC-CC-CCC
Q 006672 121 LRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK-NK-SES 198 (636)
Q Consensus 121 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~-~~~ 198 (636)
.+ ..|+...|.+.++.=.+.+..+.|+.+++..+-. .|++..|--....=.++|.+..|+.+|+...+. |- ..+
T Consensus 168 ~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~ 243 (677)
T KOG1915|consen 168 ME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEA 243 (677)
T ss_pred Hc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHH
Confidence 43 3455555555555544555555555555544432 344444444444444455555555554433211 00 001
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhCC-----------------------------------------------CCChH
Q 006672 199 VLLWNVLINGCSKIGYLRKAVELFGMMP-----------------------------------------------KKNVA 231 (636)
Q Consensus 199 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-----------------------------------------------~~~~~ 231 (636)
...+.+....-.++..++.|.-+|.-.. .-|-.
T Consensus 244 e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYD 323 (677)
T KOG1915|consen 244 EILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYD 323 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCch
Confidence 1111111111122222233322222111 12344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCC------------hhhHHH-HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH
Q 006672 232 SWVSLIDGFMRKGDLKKAGELFEQMPEKG------------VVSWTA-MINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298 (636)
Q Consensus 232 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~------------~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 298 (636)
+|--.+..-...|+.+...++|++....- +..|-. .+-.=....+.+.+.++|+..++. ++...+|
T Consensus 324 sWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFt 402 (677)
T KOG1915|consen 324 SWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFT 402 (677)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccch
Confidence 55556666666667777777766654211 111111 111113355666666777666663 4445566
Q ss_pred HHHHHHHHH----hcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHH
Q 006672 299 VVSALSACA----KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWG 371 (636)
Q Consensus 299 ~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 371 (636)
|.-+--.|+ +..++..|.+++...+ |..|...++...|+.-.+.++++....++++-.+ .|..+|.-....
T Consensus 403 FaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaEl 480 (677)
T KOG1915|consen 403 FAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAEL 480 (677)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHH
Confidence 665544443 3456667777766654 4456666777777777777777777777766654 244566666555
Q ss_pred HHHcCChHHHHHHHHHHhHcCC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHH-----h
Q 006672 372 LAIHGRYEQAIQYFKKMMYSGT-EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS-----R 445 (636)
Q Consensus 372 ~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~-----~ 445 (636)
-...|+.+.|..+|+-.+.... ......|...|.--...|.++.|..+++++.+. .+-..+|-+....-. +
T Consensus 481 E~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r---t~h~kvWisFA~fe~s~~~~~ 557 (677)
T KOG1915|consen 481 ETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR---TQHVKVWISFAKFEASASEGQ 557 (677)
T ss_pred HHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh---cccchHHHhHHHHhccccccc
Confidence 5566777777777776665421 111234555555445667777777777776642 233334444433222 2
Q ss_pred cC-----------CchHHHHHHHHHHHHHhccCCCCc--hhHHHHHHHHHHcCChhHHHHHHHHH
Q 006672 446 VG-----------QDSQGYQNSQNSFTKLLQLKPKHP--SSYVLLSNIYAAEGRWKDVARVRTLM 497 (636)
Q Consensus 446 ~g-----------~~~~A~~~~~~~~~~~~~l~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m 497 (636)
.| .+..|..+|+++....-+.+|+.. ......-+.-...|...+...+-.+|
T Consensus 558 ~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~m 622 (677)
T KOG1915|consen 558 EDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKM 622 (677)
T ss_pred cccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhc
Confidence 23 445566666666555545544322 12222233333344444444444444
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-11 Score=127.37 Aligned_cols=116 Identities=14% Similarity=0.095 Sum_probs=67.5
Q ss_pred hcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCh--HHHHHHHHHHHhcCCHHHHHH
Q 006672 176 QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK--KNV--ASWVSLIDGFMRKGDLKKAGE 251 (636)
Q Consensus 176 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~--~~~~~li~~~~~~g~~~~A~~ 251 (636)
..|+++.|++.+.+..+.. +-....+-.......+.|+++.|.+++.+..+ |+. .+.......+...|+++.|..
T Consensus 96 ~~g~~~~A~~~l~~~~~~~-~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA-AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 4677777777776665432 11223333444556666777777777766432 222 233334555666666666666
Q ss_pred HHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 006672 252 LFEQMPEK---GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292 (636)
Q Consensus 252 ~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 292 (636)
.++.+.+. +...+..+...|.+.|++++|.+++..+.+.++
T Consensus 175 ~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~ 218 (409)
T TIGR00540 175 GVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL 218 (409)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 66665432 344566666667777777777777777666653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.6e-13 Score=133.04 Aligned_cols=250 Identities=19% Similarity=0.224 Sum_probs=68.9
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCC-CCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCC---hHHHHHHHHHHHhcCC
Q 006672 170 LADMYVQLGKTRGAFKVFDETPEKN-KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN---VASWVSLIDGFMRKGD 245 (636)
Q Consensus 170 li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~ 245 (636)
+...+.+.|++++|++++++..... .+.|..-|..+.......+++++|++.++++...+ +..+..++.. ...++
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccc
Confidence 3555556666666666664332222 13344444444445555555555555555555322 2233444444 45555
Q ss_pred HHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 006672 246 LKKAGELFEQMPE--KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG-VRANDFTVVSALSACAKVGALEAGVRVHNYI 322 (636)
Q Consensus 246 ~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 322 (636)
+++|.+++...-+ ++...+..++..+.+.++++++.++++++.... .+++...|..+...+.+.|+.++|...++.+
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555544322 234445555566666666666666666655422 2334445555555555666666666666666
Q ss_pred HHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCC-CHH
Q 006672 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGT 398 (636)
Q Consensus 323 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ 398 (636)
++.. |.+..+...++..+...|+.+++.+++..... .|...|..+..+|...|+.++|+..|++..+ ..| |+.
T Consensus 173 l~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~--~~p~d~~ 249 (280)
T PF13429_consen 173 LELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK--LNPDDPL 249 (280)
T ss_dssp HHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH--HSTT-HH
T ss_pred HHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc--ccccccc
Confidence 5544 33455555555555555555554444443332 3444555555555555555555555555554 233 234
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHh
Q 006672 399 VFLAILTACWYSGQVKLALNFFDSM 423 (636)
Q Consensus 399 t~~~ll~a~~~~g~~~~a~~~~~~m 423 (636)
+...+..++...|+.++|.++..+.
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccc
Confidence 4444555555555555555555443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.48 E-value=1e-10 Score=120.85 Aligned_cols=284 Identities=12% Similarity=0.037 Sum_probs=207.8
Q ss_pred HhcCChHHHHHHHhhCCC--CCh-HHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC--hhhHHHHHHHHHhCCChHHHHH
Q 006672 210 SKIGYLRKAVELFGMMPK--KNV-ASWVSLIDGFMRKGDLKKAGELFEQMPE--KG--VVSWTAMINGFSQNGEAEKALA 282 (636)
Q Consensus 210 ~~~g~~~~A~~~~~~m~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~A~~ 282 (636)
...|+++.|.+.+.+..+ |++ ..+-....++.+.|+.+.|.+.|.+..+ ++ ....-.....+.+.|+++.|..
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 468999999999988764 333 3344556778889999999999998643 23 2333445778889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHH-------HHhhHHhhcCCHHHHHHHHh
Q 006672 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT-------ALVDMYAKCGNIEAASLVFG 355 (636)
Q Consensus 283 l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~li~~~~~~g~~~~A~~~~~ 355 (636)
.++.+.+.. +-+...+..+...+...|+++.+.+.+..+.+.+..+...... .+++.-......+...+.++
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999875 4466778889999999999999999999999987543332211 11211122233445555666
Q ss_pred hccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHH--HHHH-HHHHHhcCcHHHHHHHHHHhHhhcCC
Q 006672 356 ETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV--FLAI-LTACWYSGQVKLALNFFDSMRFDYFI 429 (636)
Q Consensus 356 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~l-l~a~~~~g~~~~a~~~~~~m~~~~~~ 429 (636)
..+. .+...+..+...+...|+.++|++++++..+ ..||... +..+ .......++.+.+.+.++...+...-
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK--KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 6654 4788999999999999999999999999998 4555442 1111 12234457888999999888763322
Q ss_pred CCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 430 EPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 430 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
.|+.....+++.++.+.|++++|.+.|+.+. .++..| ++..+..++..+.+.|+.++|.+++++...
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~--a~~~~p-~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVA--ACKEQL-DANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhH--HhhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2222667799999999999999999998432 224567 555677999999999999999999997643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-09 Score=104.87 Aligned_cols=189 Identities=12% Similarity=0.089 Sum_probs=143.4
Q ss_pred ChhHHHHHHHHhhcCCChHHHHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHH
Q 006672 62 SSRITTQLISSASLHKSIDYALSIFDHFT---PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138 (636)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 138 (636)
+...|-.....=-.++++..|+.+|++.. .++...|-..+..=.++.....|..++++....=.+.|..-|. -+-.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK-Y~ym 150 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK-YIYM 150 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH-HHHH
Confidence 34444444444455788899999999776 4577788888888899999999999999987632222333332 2222
Q ss_pred HHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHH
Q 006672 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218 (636)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 218 (636)
=-..|+...|+++|+.-.+ .+|+...|++.|+.=.+...++.|+.++++..-- .|++.+|--...--.+.|....|
T Consensus 151 EE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHH
Confidence 3357899999999999887 4899999999999999999999999999987643 79999999999999999999999
Q ss_pred HHHHhhCCC------CChHHHHHHHHHHHhcCCHHHHHHHHhh
Q 006672 219 VELFGMMPK------KNVASWVSLIDGFMRKGDLKKAGELFEQ 255 (636)
Q Consensus 219 ~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~ 255 (636)
..+|....+ .+...+.++...=.++..++.|.-+|+-
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iyky 269 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKY 269 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988763 1233455555555566677777777653
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.2e-12 Score=126.12 Aligned_cols=273 Identities=15% Similarity=0.128 Sum_probs=212.0
Q ss_pred ChHHHHHHHhhCCC--C-ChHHHHHHHHHHHhcCCHHHHHHHHhhCCCC------ChhhHHHHHHHHHhCCChHHHHHHH
Q 006672 214 YLRKAVELFGMMPK--K-NVASWVSLIDGFMRKGDLKKAGELFEQMPEK------GVVSWTAMINGFSQNGEAEKALAMF 284 (636)
Q Consensus 214 ~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~ 284 (636)
+.++|+..|..... + ...+...+..+|...+++++|+++|+.+.+. +...|.+.+..+-+ +-++..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 46777777777442 2 2355667778888888888998888887643 45677776654432 2233333
Q ss_pred -HHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChh
Q 006672 285 -FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363 (636)
Q Consensus 285 -~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 363 (636)
+.+.+. -+-.+.||..+.++|+-.++.+.|++.|++.++.+ +.....|+.+..-+.....+|.|...|+.....|..
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 233332 24456889999999999999999999999988765 457888898888899999999999999988875554
Q ss_pred ---cHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHH
Q 006672 364 ---TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTV 438 (636)
Q Consensus 364 ---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 438 (636)
+|-.+.-.|.++++++.|+-.|+++.+ +.|. .+....+...+-+.|+.|+|+++++++.. +.| ++..--.
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~---ld~kn~l~~~~ 562 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH---LDPKNPLCKYH 562 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh---cCCCCchhHHH
Confidence 556677889999999999999999998 7776 45666677788899999999999999874 334 4444555
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 439 VVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
.+..+...+++++|+..+++. .++.|++...|..++.+|.+.|+.+.|+.-|.-|.+..
T Consensus 563 ~~~il~~~~~~~eal~~LEeL----k~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEEL----KELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHH----HHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 677888899999999998854 46789999999999999999999999999998887754
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.6e-11 Score=109.24 Aligned_cols=278 Identities=13% Similarity=0.152 Sum_probs=167.5
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC-CC------hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006672 235 SLIDGFMRKGDLKKAGELFEQMPE-KG------VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307 (636)
Q Consensus 235 ~li~~~~~~g~~~~A~~~~~~~~~-~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 307 (636)
+|.+.|.+.|..|.|+++-+.+.+ || ....-.|..-|...|-+|.|..+|..+.+.| ..-......++..|-
T Consensus 74 tLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ 152 (389)
T COG2956 74 TLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQ 152 (389)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHH
Confidence 444555555555555555544432 22 1233344555556666666666666665543 223344555666666
Q ss_pred hcCCcHHHHHHHHHHHHcCCCCc----hhHHHHHhhHHhhcCCHHHHHHHHhhccCC---ChhcHHHHHHHHHHcCChHH
Q 006672 308 KVGALEAGVRVHNYISCNDFGLK----GAIGTALVDMYAKCGNIEAASLVFGETKEK---DLLTWTAMIWGLAIHGRYEQ 380 (636)
Q Consensus 308 ~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~ 380 (636)
...+|++|+++-..+.+.+-.+. ...|.-|...+....+.+.|..++.+..+. .+..--.+...+...|+++.
T Consensus 153 ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~ 232 (389)
T COG2956 153 ATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQK 232 (389)
T ss_pred HhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHH
Confidence 66666666666665555442222 223455556666667777777777776652 33344456667788888999
Q ss_pred HHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHH
Q 006672 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSF 460 (636)
Q Consensus 381 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (636)
|++.++...+.+..--+.+...|..+|.+.|+.+++..++.++.+ ..+.+..-..+.+......-.+.|...+.+-.
T Consensus 233 AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~---~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql 309 (389)
T COG2956 233 AVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME---TNTGADAELMLADLIELQEGIDAAQAYLTRQL 309 (389)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---ccCCccHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 999888888854333355777788888899999999888888875 34555555556565555555666666655333
Q ss_pred HHHhccCCCCchhHHHHHHHHH-H--cCChhHHHHHHHHHHhCCCccCCeeeEEEECCEEEEec
Q 006672 461 TKLLQLKPKHPSSYVLLSNIYA-A--EGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFE 521 (636)
Q Consensus 461 ~~~~~l~p~~~~~~~~l~~~~~-~--~g~~~~A~~~~~~m~~~g~~~~~~~s~i~~~~~~~~~~ 521 (636)
.-.|. ...+..|+.... . .|++.+...+++.|....++..|.+..-..+-..|.|.
T Consensus 310 ----~r~Pt-~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~ 368 (389)
T COG2956 310 ----RRKPT-MRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLY 368 (389)
T ss_pred ----hhCCc-HHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceeee
Confidence 33563 334444444333 2 45688888889999888787777665555555555443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.3e-10 Score=110.62 Aligned_cols=285 Identities=13% Similarity=0.070 Sum_probs=165.5
Q ss_pred HHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCC--CChhhHHHHHHHHHhcCC
Q 006672 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS--ESVLLWNVLINGCSKIGY 214 (636)
Q Consensus 137 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~ 214 (636)
.++-.....+++.+-.+.....|++.+...-+....+.-...++|+|+.+|+++..+..- .|..+|..++-.--...+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 344444556666666666666666666555555555556667777777777777654311 134455444322211111
Q ss_pred hH-HHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006672 215 LR-KAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG---VVSWTAMINGFSQNGEAEKALAMFFQMLDA 290 (636)
Q Consensus 215 ~~-~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 290 (636)
.. -|..+ -.+.+--+.|...+.+-|+-.++.++|...|++..+.| ...|+.|..-|....+...|++-+++..+-
T Consensus 315 Ls~LA~~v-~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi 393 (559)
T KOG1155|consen 315 LSYLAQNV-SNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI 393 (559)
T ss_pred HHHHHHHH-HHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc
Confidence 11 11111 11112234455556666666777777777777766543 456777777777777777777777777764
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC-CC--hhcHHH
Q 006672 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-KD--LLTWTA 367 (636)
Q Consensus 291 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~--~~~~~~ 367 (636)
+ +-|-..|-.+..+|.-.+...-|.-.|+...+.. |.|..+|.+|.+.|.+.+++++|.+.|.+... .| ...+..
T Consensus 394 ~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~ 471 (559)
T KOG1155|consen 394 N-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVR 471 (559)
T ss_pred C-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHH
Confidence 3 4466677777777777777777777777766554 56677777777777777777777777766554 22 356666
Q ss_pred HHHHHHHcCChHHHHHHHHHHhH----cCCCCC-H-HHHHHHHHHHHhcCcHHHHHHHHHHhH
Q 006672 368 MIWGLAIHGRYEQAIQYFKKMMY----SGTEPD-G-TVFLAILTACWYSGQVKLALNFFDSMR 424 (636)
Q Consensus 368 li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~-~t~~~ll~a~~~~g~~~~a~~~~~~m~ 424 (636)
+...|-+.++.++|.+.|++-++ .|...+ . .....|..-+.+.+++++|..+.....
T Consensus 472 LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 77777777777777766666544 222222 1 122223344455566666655544443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.2e-11 Score=121.25 Aligned_cols=275 Identities=13% Similarity=0.110 Sum_probs=173.1
Q ss_pred CCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhH--HHHHHHHHHhcCChHHHH
Q 006672 107 NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV--RVHLADMYVQLGKTRGAF 184 (636)
Q Consensus 107 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~ 184 (636)
.|+++.|.+.+....+.+-.| ...|.....+..+.|+++.+.+.+.++.+. .|+... .......+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 455555555555443321111 111222222334555666666666655543 233221 112244555666666666
Q ss_pred HHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCC---Ch--------HHHHHHHHHHHhcCCHHHHHHHH
Q 006672 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK---NV--------ASWVSLIDGFMRKGDLKKAGELF 253 (636)
Q Consensus 185 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~--------~~~~~li~~~~~~g~~~~A~~~~ 253 (636)
..++++.+.. +.+......+...|.+.|++++|++++..+.+. +. .+|..++....+..+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 6666665554 445555666666666666666666555555521 11 12333344444445566677777
Q ss_pred hhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCc
Q 006672 254 EQMPE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330 (636)
Q Consensus 254 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 330 (636)
+.++. .++.....+...+...|+.++|..++++..+. +|+.... ++.+....++.+.+.+..+...+.. |.|
T Consensus 253 ~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~ 327 (398)
T PRK10747 253 KNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDT 327 (398)
T ss_pred HhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCC
Confidence 77653 35677788888899999999999999888873 5555221 2333345588888888888887665 677
Q ss_pred hhHHHHHhhHHhhcCCHHHHHHHHhhccC--CChhcHHHHHHHHHHcCChHHHHHHHHHHhH
Q 006672 331 GAIGTALVDMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (636)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 390 (636)
+....++...+.+.+++++|.+.|+...+ |+...+..+...+.+.|+.++|.+++++...
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 78888899999999999999999988875 7777888899999999999999999988754
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.3e-10 Score=108.88 Aligned_cols=426 Identities=11% Similarity=0.062 Sum_probs=276.3
Q ss_pred ChhHHHHHHHHhhcCCChHHHHHHhccCCCC-----CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHH
Q 006672 62 SSRITTQLISSASLHKSIDYALSIFDHFTPK-----NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136 (636)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 136 (636)
+-.+...|...|.......+|+..++-+... .-..--.+...+.+...+.+|+.+|+-.+..-...+..+-..++
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 3345556667777777888888888754422 11222234455677788999999998776642222333333333
Q ss_pred H----HHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCC------------CChh
Q 006672 137 K----SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS------------ESVL 200 (636)
Q Consensus 137 ~----~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~------------~~~~ 200 (636)
. .+.+.|.++.|..-|+...+. .|+..+...|+-++.--|+-++..+.|.+|...... |+..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 3 356889999999999998875 577776666777777889999999999888644222 2223
Q ss_pred hHHHHH-----HHHHhcC--ChHHHHHHHhhCC----CCChH-------------HHH--------HHHHHHHhcCCHHH
Q 006672 201 LWNVLI-----NGCSKIG--YLRKAVELFGMMP----KKNVA-------------SWV--------SLIDGFMRKGDLKK 248 (636)
Q Consensus 201 ~~~~li-----~~~~~~g--~~~~A~~~~~~m~----~~~~~-------------~~~--------~li~~~~~~g~~~~ 248 (636)
..|..| .-.-+.+ +.++++-.--++. .|+-. .+. .-..-|.+.|+++.
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 333222 2222211 2233332222222 22210 010 11234678899999
Q ss_pred HHHHHhhCCCCChhh----HHHHH-HHHHhC-CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 006672 249 AGELFEQMPEKGVVS----WTAMI-NGFSQN-GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322 (636)
Q Consensus 249 A~~~~~~~~~~~~~~----~~~li-~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 322 (636)
|.+++.-..+.|..+ -|.|- --|.+. .++..|..+-+...... .-+......-.+.....|+++.|.+.+.+.
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 988888777666332 22222 223333 35666666655554322 222222222222334568999999999999
Q ss_pred HHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HH
Q 006672 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GT 398 (636)
Q Consensus 323 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ 398 (636)
+...-......|| +.-.+-+.|++++|+..|-.+.. .++...-.+.+.|-...+...|++++-+... +-|+ +.
T Consensus 517 l~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ 593 (840)
T KOG2003|consen 517 LNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPA 593 (840)
T ss_pred HcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHH
Confidence 8655333333333 44457789999999999977653 6777777888889989999999999988776 5565 67
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHH
Q 006672 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLS 478 (636)
Q Consensus 399 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~ 478 (636)
....|...|-+.|+-.+|.+++-.--+ -++-+.++..-|..-|....-+++|+.+|+++. -+.| +.+-|..|+
T Consensus 594 ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaa----liqp-~~~kwqlmi 666 (840)
T KOG2003|consen 594 ILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA----LIQP-NQSKWQLMI 666 (840)
T ss_pred HHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH----hcCc-cHHHHHHHH
Confidence 888888999999999999998765432 245578888888888888889999999999765 3456 667777665
Q ss_pred H-HHHHcCChhHHHHHHHHHHhC
Q 006672 479 N-IYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 479 ~-~~~~~g~~~~A~~~~~~m~~~ 500 (636)
. ++.+.|++..|..+++...++
T Consensus 667 asc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 667 ASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHhcccHHHHHHHHHHHHHh
Confidence 4 566789999999999988653
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-09 Score=105.28 Aligned_cols=250 Identities=14% Similarity=0.105 Sum_probs=121.4
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCC------ChHHHHHHHHHHHhcC
Q 006672 171 ADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK------NVASWVSLIDGFMRKG 244 (636)
Q Consensus 171 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g 244 (636)
..+|-...+.+++..-.+.....|.+.+...-+....+.....++++|+.+|+++.+. |..+|+.++-.--.+.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 3444455566666666666666665544444444455555566666666666666543 2334444433222211
Q ss_pred CHHH-HHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 006672 245 DLKK-AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323 (636)
Q Consensus 245 ~~~~-A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 323 (636)
.+.- |..++ .+.+--+.|...+..-|.-.++.++|...|++.++.+ +-....|+.+..-|....+...|.+-++.++
T Consensus 314 kLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 314 KLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 1111 11111 1111223444444555555555555655555555543 2223344444455555555555555555555
Q ss_pred HcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHH
Q 006672 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400 (636)
Q Consensus 324 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 400 (636)
+.. |.|-..|-.|.++|.-.+...-|+-.|++..+ .|...|.+|..+|.+.++.++|++.|.+....|-. +...+
T Consensus 392 di~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l 469 (559)
T KOG1155|consen 392 DIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSAL 469 (559)
T ss_pred hcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHH
Confidence 443 44445555555555555555555555544432 34445555555555555555555555555443211 23444
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHhH
Q 006672 401 LAILTACWYSGQVKLALNFFDSMR 424 (636)
Q Consensus 401 ~~ll~a~~~~g~~~~a~~~~~~m~ 424 (636)
..+...+-+.++.++|.++|+.-.
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v 493 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYV 493 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 455555555555555555554443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.6e-11 Score=121.56 Aligned_cols=278 Identities=15% Similarity=0.182 Sum_probs=207.9
Q ss_pred ChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCC------CChHHHHHHHHHHHhcCCHH-HHHH
Q 006672 179 KTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK------KNVASWVSLIDGFMRKGDLK-KAGE 251 (636)
Q Consensus 179 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~-~A~~ 251 (636)
+..+|...|..++..- .-+......+..+|...+++++|..+|+.+.. .+..+|.+.+--+-+.=.+. -|..
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 5678888888855432 33345556677889999999999999988873 45677877765443322221 1222
Q ss_pred HHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCc
Q 006672 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA-NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330 (636)
Q Consensus 252 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 330 (636)
+.+.. ...+.+|.++...|.-+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|...+... +.+
T Consensus 413 Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rh 488 (638)
T KOG1126|consen 413 LIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRH 488 (638)
T ss_pred HHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chh
Confidence 22222 234789999999999999999999999999875 44 67788877777788888999999998877432 223
Q ss_pred hhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHH
Q 006672 331 GAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTA 406 (636)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a 406 (636)
-..|-.|...|.|.++++.|+-.|+...+ .+.+....+...+-+.|+.++|+++++++.. +.|. +..-..-...
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~~~~~~i 566 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCKYHRASI 566 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhHHHHHHH
Confidence 33444577889999999999999999886 3566677777888899999999999999988 4443 3444455566
Q ss_pred HHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCC
Q 006672 407 CWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH 470 (636)
Q Consensus 407 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~ 470 (636)
+...+++++|++.++++++ +.| +...|..++..|.+.|+.+.|+.-|.-|. .++|+-
T Consensus 567 l~~~~~~~eal~~LEeLk~---~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~----~ldpkg 624 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKE---LVPQESSVFALLGKIYKRLGNTDLALLHFSWAL----DLDPKG 624 (638)
T ss_pred HHhhcchHHHHHHHHHHHH---hCcchHHHHHHHHHHHHHHccchHHHHhhHHHh----cCCCcc
Confidence 7778999999999999985 445 47788999999999999999999887544 678863
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-09 Score=107.82 Aligned_cols=454 Identities=12% Similarity=0.048 Sum_probs=289.8
Q ss_pred HHHHHHHHhcCC---hHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhc--cCCCCCcchHHHHHHHHHh
Q 006672 32 THIISLIHSSNS---TKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFD--HFTPKNLHIFNVLIRGLAE 106 (636)
Q Consensus 32 ~~~~~~l~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~--~~~~~~~~~~~~li~~~~~ 106 (636)
.-+..+++.+-. ...|.-+-+.+...+ -|+.-.--+..+|.-.|..+.|..+.. .+...|..+.......+.+
T Consensus 17 ~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~ 94 (611)
T KOG1173|consen 17 EKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVK 94 (611)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 344444443321 455555555555444 344444457777777888888887775 4457788888888888888
Q ss_pred CCCchHHHHHHH----HhHHCC---------CCCCccc----HHHHH-------HHHHccCChHHHHHHHHHHHHhCCCC
Q 006672 107 NSHFQSCISHFV----FMLRLS---------VRPNRLT----YPFVS-------KSVASLSLLSLGRGLHCLIVKSGVEY 162 (636)
Q Consensus 107 ~g~~~~A~~~~~----~m~~~g---------~~p~~~t----~~~ll-------~~~~~~~~~~~a~~~~~~~~~~g~~~ 162 (636)
..++++|+.++. .+.... +.+|..- -+.-. ..+....+.++|+..+.+.+..
T Consensus 95 lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~---- 170 (611)
T KOG1173|consen 95 LKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA---- 170 (611)
T ss_pred HHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----
Confidence 999999998887 221100 1111111 00001 1222334455566666555433
Q ss_pred ChhHHHHHHHHHHhc-CChHHHHHHHhhCCCC-CCCCChhhHHHHHHHHHhcCChHHHHHHH--hhC--CCCChHHHHHH
Q 006672 163 DAFVRVHLADMYVQL-GKTRGAFKVFDETPEK-NKSESVLLWNVLINGCSKIGYLRKAVELF--GMM--PKKNVASWVSL 236 (636)
Q Consensus 163 ~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~--~~m--~~~~~~~~~~l 236 (636)
|+.-+.++...-... =-.++-..+|+.+.-. -...++.....+.....-...-++....- ..+ .+.++......
T Consensus 171 D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ 250 (611)
T KOG1173|consen 171 DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEK 250 (611)
T ss_pred chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHH
Confidence 333333322221110 0111223333322110 00111111111111110000000000000 000 02355566667
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCh---hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcH
Q 006672 237 IDGFMRKGDLKKAGELFEQMPEKGV---VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313 (636)
Q Consensus 237 i~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 313 (636)
.+-+...+++.+..++++...+.|. ..+..-|..+...|+..+-..+=.+|.+. .+-...+|-++.--|...|+.+
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~s 329 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYS 329 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcH
Confidence 7778889999999999999887663 34555677888999988888888888875 3556788999988888889999
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhH
Q 006672 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (636)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 390 (636)
+|++.+......+ +.-...|-.+...|+-.|.-|+|...+....+ .....+--+.--|.+.++.+.|.+.|.+...
T Consensus 330 eARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a 408 (611)
T KOG1173|consen 330 EARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA 408 (611)
T ss_pred HHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 9999999887654 44566888899999999999999888776554 2222333345568889999999999999987
Q ss_pred cCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhc-CCCC----ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHh
Q 006672 391 SGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDY-FIEP----SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLL 464 (636)
Q Consensus 391 ~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 464 (636)
+.|+ +...+-+.-...+.+.+.+|..+|+.....- .+.+ -..+++.|+.+|.+.+++++|+..++++ +
T Consensus 409 --i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a----L 482 (611)
T KOG1173|consen 409 --IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA----L 482 (611)
T ss_pred --cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH----H
Confidence 7776 5566666666667899999999999876211 0111 2456889999999999999999999854 5
Q ss_pred ccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 465 QLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 465 ~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
.+.|.++.+|.+++-+|...|+++.|...|.+..-
T Consensus 483 ~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 483 LLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 78999999999999999999999999999998876
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.5e-09 Score=109.38 Aligned_cols=434 Identities=15% Similarity=0.128 Sum_probs=263.6
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCCC----CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCC
Q 006672 50 IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP----KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSV 125 (636)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 125 (636)
++..+...|+.|+..+|.+||..||..|+.+.|- +|.-|.- -+...++.++.+..+.++.+.+-
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4556677899999999999999999999999998 8887763 35567888888888888877664
Q ss_pred CCCcccHHHHHHHHHccCChHHHHHHHHHHHH-------hCCCC-C-------------hhHHHHHHHHHHhcCChHHHH
Q 006672 126 RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVK-------SGVEY-D-------------AFVRVHLADMYVQLGKTRGAF 184 (636)
Q Consensus 126 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-------~g~~~-~-------------~~~~~~li~~~~~~g~~~~A~ 184 (636)
.|-..||..|+.+|...||+..-..+-+.+.. .|+.. . ..--...+....-.|-++.+.
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 58888999999999999987652222221221 22110 0 001122344445567777788
Q ss_pred HHHhhCCCCCCCCChhhHHHHHHHHH-hcCChHHHHHHHhhCCC-CChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh-
Q 006672 185 KVFDETPEKNKSESVLLWNVLINGCS-KIGYLRKAVELFGMMPK-KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV- 261 (636)
Q Consensus 185 ~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~- 261 (636)
+++..++... .-. +....++-+. .+..+++-..+.....+ +++.++.+++..-.-.|+++.|..++.+|.+.+.
T Consensus 160 kll~~~Pvsa-~~~--p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 160 KLLAKVPVSA-WNA--PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred HHHhhCCccc-ccc--hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 8877776332 101 1111133222 23445666666666665 8999999999999999999999999999998762
Q ss_pred ----hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHH-----------HHHHHHH--
Q 006672 262 ----VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR-----------VHNYISC-- 324 (636)
Q Consensus 262 ----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~-----------~~~~~~~-- 324 (636)
..|-.++ + .++...+..+++-|.+.|+.|+..|+...+..+.+.|....+.+ ++..+..
T Consensus 237 ir~HyFwpLl~-g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~ 312 (1088)
T KOG4318|consen 237 IRAHYFWPLLL-G---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGL 312 (1088)
T ss_pred cccccchhhhh-c---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhccc
Confidence 2344433 3 78888999999999999999999999988888877443222111 1111110
Q ss_pred -----------------------cCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCC-------ChhcHHHHHHHHHH
Q 006672 325 -----------------------NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK-------DLLTWTAMIWGLAI 374 (636)
Q Consensus 325 -----------------------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~ 374 (636)
.|+.....+|...+ -...+|+-++.+++-..+..| ++..+..++.-|.+
T Consensus 313 ~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFr 391 (1088)
T KOG4318|consen 313 LANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFR 391 (1088)
T ss_pred HhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHH
Confidence 12222222222211 122245545554444443321 22223222222211
Q ss_pred cC----------------------ChHHHHHHHHHHhHc----------------CCCC---------------------
Q 006672 375 HG----------------------RYEQAIQYFKKMMYS----------------GTEP--------------------- 395 (636)
Q Consensus 375 ~g----------------------~~~~A~~~~~~m~~~----------------g~~p--------------------- 395 (636)
.- ...+..++....+.. -..|
T Consensus 392 r~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~s 471 (1088)
T KOG4318|consen 392 RIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNS 471 (1088)
T ss_pred HHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHH
Confidence 10 000111111000000 0000
Q ss_pred ----------------C--HHHHHHHHHHHHhcCcHHHHHHHHHHhHh-hcCCCCChhHHHHHHHHHHhcCCchHHHHHH
Q 006672 396 ----------------D--GTVFLAILTACWYSGQVKLALNFFDSMRF-DYFIEPSVKHHTVVVNLLSRVGQDSQGYQNS 456 (636)
Q Consensus 396 ----------------~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 456 (636)
+ ...|..++.-|......+.|..+.++... +..+..+..-+..+.+++.|.+...++..+.
T Consensus 472 e~n~lK~l~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL 551 (1088)
T KOG4318|consen 472 EYNKLKILCDEEKYEDLLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTIL 551 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHH
Confidence 0 02244555555556666666666665531 1123344556777888888888888888888
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCcc
Q 006672 457 QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKK 504 (636)
Q Consensus 457 ~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 504 (636)
+++.+ ..+..|.-..+..-+.+..+..|+.+...++.+-....|+..
T Consensus 552 ~e~ks-~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 552 YEDKS-SAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred hhhhH-HhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 87765 334455556677778888889999999999999999988876
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.4e-08 Score=99.54 Aligned_cols=261 Identities=12% Similarity=0.146 Sum_probs=164.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-------hhhHHHHHHHHHhCCChHHHHHHHHHHHHCC-----------C
Q 006672 231 ASWVSLIDGFMRKGDLKKAGELFEQMPEKG-------VVSWTAMINGFSQNGEAEKALAMFFQMLDAG-----------V 292 (636)
Q Consensus 231 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------~ 292 (636)
..|..+...|-..|+++.|..+|++...-+ ..+|..-...=.+..+++.|+.++++..... .
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 357888899999999999999999887643 2456666666677888999999888775321 1
Q ss_pred CCCHH------HHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC----CCh
Q 006672 293 RANDF------TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE----KDL 362 (636)
Q Consensus 293 ~p~~~------t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~ 362 (636)
++... .|...+..--..|-++..+.+++.+++..+. ++.+.-...-.+-...-++++.+++++-.. |++
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 11112 2233333334457788888899988876643 333333344445556678899999988765 554
Q ss_pred h-cHHHHHHHHHH---cCChHHHHHHHHHHhHcCCCCCHHHHHHHHHH--HHhcCcHHHHHHHHHHhHhhcCCCCC--hh
Q 006672 363 L-TWTAMIWGLAI---HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA--CWYSGQVKLALNFFDSMRFDYFIEPS--VK 434 (636)
Q Consensus 363 ~-~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a--~~~~g~~~~a~~~~~~m~~~~~~~p~--~~ 434 (636)
. .|++.+.-+.+ ....+.|..+|++.++ |.+|...-+..|+-| =-..|....|..++++... ++++. ..
T Consensus 547 ~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~ 623 (835)
T KOG2047|consen 547 YDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLD 623 (835)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHH
Confidence 3 78887776654 2467999999999998 677765433333322 2346888999999998764 45544 44
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCc--hhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 435 HHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHP--SSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
.|+..|.--...=-...-.++|+++. +.-|++- ....-.+..-.+.|..+.|..++.--.+
T Consensus 624 myni~I~kaae~yGv~~TR~iYekaI----e~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 624 MYNIYIKKAAEIYGVPRTREIYEKAI----ESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred HHHHHHHHHHHHhCCcccHHHHHHHH----HhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 56665543222222233344444443 3334322 2333455666677888888777765444
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.4e-09 Score=99.14 Aligned_cols=286 Identities=14% Similarity=0.157 Sum_probs=198.7
Q ss_pred cCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCC-CCh------HHHHHHHHHHHhcCCHHHH
Q 006672 177 LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK-KNV------ASWVSLIDGFMRKGDLKKA 249 (636)
Q Consensus 177 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~------~~~~~li~~~~~~g~~~~A 249 (636)
.++.++|.++|-+|.+.. +.+..+--+|.+.|-+.|..+.|+.+-..+.. ||. ...-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 456677777777776433 33444455566667777777777777666553 332 2334566778888999999
Q ss_pred HHHHhhCCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCcHHHHHHHHHH
Q 006672 250 GELFEQMPEKG---VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF----TVVSALSACAKVGALEAGVRVHNYI 322 (636)
Q Consensus 250 ~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~ 322 (636)
+.+|..+.+.+ ....-.|+..|-+..+|++|++.-+++.+.+-.+..+ .|.-+...+....+.+.|...+...
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 99998887744 3456678889999999999999999888876555433 3444555555567888999999988
Q ss_pred HHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChh----cHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHH
Q 006672 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL----TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398 (636)
Q Consensus 323 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 398 (636)
.+.+ +..+..--.+.+.+...|+++.|.+.++.+.+.|.. +...|..+|.+.|+.++.+..+.++.+....++.
T Consensus 207 lqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~- 284 (389)
T COG2956 207 LQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA- 284 (389)
T ss_pred HhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH-
Confidence 8765 555666677888999999999999999999886543 5677888999999999999999999884444443
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHH---hcCCchHHHHHHHHHHHHHhccCCC
Q 006672 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS---RVGQDSQGYQNSQNSFTKLLQLKPK 469 (636)
Q Consensus 399 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~l~p~ 469 (636)
-..+..--....-.+.|..++.+-.. -.|+...+..+++.-. .-|...+....++.+...-++..|.
T Consensus 285 -~l~l~~lie~~~G~~~Aq~~l~~Ql~---r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 285 -ELMLADLIELQEGIDAAQAYLTRQLR---RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred -HHHHHHHHHHhhChHHHHHHHHHHHh---hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCC
Confidence 23333322233334555554444332 3799988888887654 3455677777777777776666664
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.4e-09 Score=100.50 Aligned_cols=276 Identities=13% Similarity=0.113 Sum_probs=182.1
Q ss_pred cCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCC----ChHHHHHHHHHHHhcCCHHHHHHH
Q 006672 177 LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGEL 252 (636)
Q Consensus 177 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~ 252 (636)
.|++..|++...+-.+.+ +.....|..-+.+--+.|+.+.+-.++.+..++ +..+.-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 588888888888766655 444555666666677788888888888777643 334566666777888888888777
Q ss_pred HhhCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCcHHHHHHHHHH
Q 006672 253 FEQMP---EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND-------FTVVSALSACAKVGALEAGVRVHNYI 322 (636)
Q Consensus 253 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~~~~~~~~~~~a~~~~~~~ 322 (636)
.++.. ..+.........+|.+.|++.....++..|.+.|.--|+ .++..++.-+...+..+.-...++..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 66544 456778888889999999999999999999988865554 35666666666655555555555554
Q ss_pred HHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCC--ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHH
Q 006672 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK--DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400 (636)
Q Consensus 323 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 400 (636)
.+. ...++.+..+++.-+..+|+.++|.++..+..++ |.. -...-.+.+-++.+.-++..++-.+. ..-++..+
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~ 331 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLL 331 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHh-CCCChhHH
Confidence 432 2455666667777777777777777776666542 222 11222334455666655555555442 11223556
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHH
Q 006672 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSF 460 (636)
Q Consensus 401 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (636)
.+|...|.+.+.+.+|...|+...+ ..|+..+|+-+.+++.+.|+..+|.+..+++.
T Consensus 332 ~tLG~L~~k~~~w~kA~~~leaAl~---~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 332 STLGRLALKNKLWGKASEALEAALK---LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh---cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 6666667777777777777775553 56777777777777777777777777766555
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.1e-09 Score=100.09 Aligned_cols=283 Identities=12% Similarity=0.078 Sum_probs=165.9
Q ss_pred HHHHHHh--CCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 006672 100 LIRGLAE--NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL 177 (636)
Q Consensus 100 li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 177 (636)
+..+..+ .|++.+|.++..+-.+.+-.| ...|.....+.-..|+.+.+-..+.++-+..-.++..+.-+........
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 4444433 567777777776655554322 2234444455556677777777777776654455566666666777777
Q ss_pred CChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCC-----------hHHHHHHHHHHHhcCCH
Q 006672 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN-----------VASWVSLIDGFMRKGDL 246 (636)
Q Consensus 178 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----------~~~~~~li~~~~~~g~~ 246 (636)
|+.+.|+.-.+++.+.+ +.+.........+|.+.|++.+...++..+.+.. ..+|..+++-....+..
T Consensus 167 ~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~ 245 (400)
T COG3071 167 RDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGS 245 (400)
T ss_pred CCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccc
Confidence 77777777766666555 5666667777777777777777777766665321 13455555555555555
Q ss_pred HHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 006672 247 KKAGELFEQMPE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323 (636)
Q Consensus 247 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 323 (636)
+.-...++..+. .++..-.+++.-+.+.|+.++|.++..+..+.+..|+.. .+-.+.+.++.+.-.+..+.-.
T Consensus 246 ~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l 321 (400)
T COG3071 246 EGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWL 321 (400)
T ss_pred hHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHH
Confidence 554555555552 334555566666777777777777777777665555411 1223344555555555554444
Q ss_pred HcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC--CChhcHHHHHHHHHHcCChHHHHHHHHHHh
Q 006672 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389 (636)
Q Consensus 324 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 389 (636)
+.. +.++..+.+|...|.+.+.+.+|...|+...+ ++..+|+-+..+|.+.|+..+|.+.+++..
T Consensus 322 ~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 322 KQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 332 34445666666666666666666666665443 455566666666666666666666555544
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.5e-09 Score=104.47 Aligned_cols=284 Identities=14% Similarity=0.121 Sum_probs=163.7
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCC---CChHHHHHHH
Q 006672 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK---KNVASWVSLI 237 (636)
Q Consensus 161 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li 237 (636)
..++.+.-...+-+...+++.+..++++++.+.. ++....+..-|.++...|+..+-..+=.++.+ ....+|-++.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg 319 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVG 319 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHH
Confidence 3344455555566667777777777777777665 66666666666777777776665555555542 3345666766
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHH
Q 006672 238 DGFMRKGDLKKAGELFEQMPEKG---VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314 (636)
Q Consensus 238 ~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 314 (636)
--|.-.|..++|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-...-+.-+.--|...++++.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHH
Confidence 66666677777777776655433 356766777777777777777666655442 00000111112223455566666
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCC
Q 006672 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394 (636)
Q Consensus 315 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 394 (636)
|.++|....... |.|+.+.+-+.-+..+.+.+.+|...|+.... ..+..... ..
T Consensus 399 Ae~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~------------------------~ik~~~~e-~~ 452 (611)
T KOG1173|consen 399 AEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALE------------------------VIKSVLNE-KI 452 (611)
T ss_pred HHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHH------------------------Hhhhcccc-cc
Confidence 666666655433 44555555555444444445555444433221 00000000 00
Q ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhH
Q 006672 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSY 474 (636)
Q Consensus 395 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~ 474 (636)
--..+++.|..+|.+.+.+++|+..+++... -.+.+..+|++++-.|...|+++.|.+.|.++ +.+.|+|..+-
T Consensus 453 ~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKa----L~l~p~n~~~~ 526 (611)
T KOG1173|consen 453 FWEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKA----LALKPDNIFIS 526 (611)
T ss_pred chhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHH----HhcCCccHHHH
Confidence 1234667777777777777777777777764 23445777777777777777777777777743 46677665544
Q ss_pred HHHH
Q 006672 475 VLLS 478 (636)
Q Consensus 475 ~~l~ 478 (636)
..|.
T Consensus 527 ~lL~ 530 (611)
T KOG1173|consen 527 ELLK 530 (611)
T ss_pred HHHH
Confidence 4443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.8e-09 Score=99.96 Aligned_cols=228 Identities=13% Similarity=0.106 Sum_probs=197.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhc
Q 006672 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344 (636)
Q Consensus 265 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 344 (636)
+.|..+|.+.|.+.+|...|+.-+.. .|-..||..+-.+|.+..+++.|..++.+-++. +|.++....-....+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56889999999999999999998876 566678888999999999999999999988865 366777777888889999
Q ss_pred CCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Q 006672 345 GNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421 (636)
Q Consensus 345 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 421 (636)
++.++|.++++...+ .++.+...+..+|.-.++.+-|+..|+++++.|+. ++..|..+.-+|...+++|-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999998876 35667777788888999999999999999999886 67889999999999999999999999
Q ss_pred HhHhhcCCCCC--hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 422 SMRFDYFIEPS--VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 422 ~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
+.... --.|+ .++|-.+.......|++.-|.+.|+-+. .-+|++..+++.|+-.-.+.|+.++|..++.....
T Consensus 383 RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL----~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 383 RALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLAL----TSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHh----ccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 98752 23344 6788899999999999999999888544 56899999999999999999999999999998877
Q ss_pred CC
Q 006672 500 RS 501 (636)
Q Consensus 500 ~g 501 (636)
..
T Consensus 458 ~~ 459 (478)
T KOG1129|consen 458 VM 459 (478)
T ss_pred hC
Confidence 43
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-09 Score=103.17 Aligned_cols=163 Identities=17% Similarity=0.072 Sum_probs=111.0
Q ss_pred hhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHH
Q 006672 331 GAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTA 406 (636)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a 406 (636)
...+..+...|...|++++|.+.+++..+ .+...+..+...+...|++++|++.+++.......|. ...+..+..+
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLC 144 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 33444444445555555555555544432 2334555666667777777777777777766422232 3456666777
Q ss_pred HHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCC
Q 006672 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGR 486 (636)
Q Consensus 407 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~ 486 (636)
+...|++++|...+++..+. .+.+...+..+...+...|++++|.+.++++.+ ..|.++..+..++.++...|+
T Consensus 145 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 218 (234)
T TIGR02521 145 ALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQ----TYNQTAESLWLGIRIARALGD 218 (234)
T ss_pred HHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHhh
Confidence 78888888888888887752 223466778888888899999999988886654 357777888888888989999
Q ss_pred hhHHHHHHHHHHh
Q 006672 487 WKDVARVRTLMQR 499 (636)
Q Consensus 487 ~~~A~~~~~~m~~ 499 (636)
.++|..+.+.+..
T Consensus 219 ~~~a~~~~~~~~~ 231 (234)
T TIGR02521 219 VAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh
Confidence 9999888887765
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-11 Score=85.22 Aligned_cols=50 Identities=20% Similarity=0.473 Sum_probs=45.6
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHc
Q 006672 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141 (636)
Q Consensus 92 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 141 (636)
||+++||++|++|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999998864
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.8e-08 Score=96.21 Aligned_cols=215 Identities=14% Similarity=0.096 Sum_probs=168.4
Q ss_pred HHHhcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHH
Q 006672 239 GFMRKGDLKKAGELFEQMPEKG---VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315 (636)
Q Consensus 239 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 315 (636)
.+.-+|+.-.|..-|+.....+ +..|--+...|.+..+.++....|.+..+.+ +-|+.+|-.-.....-.+++++|
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 3455788888888888776543 3347778889999999999999999998865 33555666666666667889999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC--C-ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcC
Q 006672 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--K-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392 (636)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 392 (636)
..=|+..+... |.++..|--+.-+..+.++++++...|++..+ | -+..|+.....+..++++++|++.|+..++
T Consensus 414 ~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~-- 490 (606)
T KOG0547|consen 414 IADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE-- 490 (606)
T ss_pred HHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--
Confidence 99999988765 55677777777888899999999999999886 3 466899999999999999999999999988
Q ss_pred CCCCH-------HHHH--HHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 006672 393 TEPDG-------TVFL--AILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFT 461 (636)
Q Consensus 393 ~~p~~-------~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 461 (636)
+.|+. .++. .++. +.=.+++..|.+++++..+ +.|. ...|..|.....+.|++++|+++|++.+.
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e---~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIE---LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHc---cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 55551 1111 1111 1124789999999999875 5565 45799999999999999999999997664
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.9e-08 Score=92.88 Aligned_cols=392 Identities=13% Similarity=0.080 Sum_probs=242.5
Q ss_pred hHHHHHHHHhhcCCChHHHHHHhccCCCCC-cchHHHHHHHHHhCC-CchHHHHHHHHhHHCCCCCCcccHHHHHHHHHc
Q 006672 64 RITTQLISSASLHKSIDYALSIFDHFTPKN-LHIFNVLIRGLAENS-HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141 (636)
Q Consensus 64 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~~-~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 141 (636)
..-...+..|...++-++|.....+.++.- ..--|.|+.-+-+.| +-.++.--+.+....- | .... .|.+...
T Consensus 98 e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrec--p--~aL~-~i~~ll~ 172 (564)
T KOG1174|consen 98 EQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIREC--P--MALQ-VIEALLE 172 (564)
T ss_pred HHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhc--c--hHHH-HHHHHHH
Confidence 345566777777888888888888877443 233344443333332 2222222222222110 0 0000 1111111
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc--CChHHHHHHHhhCCCC-CCCCChhhHHHHHHHHHhcCChHHH
Q 006672 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL--GKTRGAFKVFDETPEK-NKSESVLLWNVLINGCSKIGYLRKA 218 (636)
Q Consensus 142 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A 218 (636)
.+ ...+...-..|-....+|+..+....+.+|+.+ ++-..|...+-.+... -++-|+.....+...+...|+.++|
T Consensus 173 l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a 251 (564)
T KOG1174|consen 173 LG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQA 251 (564)
T ss_pred Hh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHH
Confidence 10 011111111222222344444444455555543 3333333333222211 1256788888899999999999999
Q ss_pred HHHHhhCCCCChHHHHH---HHHHHHhcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 006672 219 VELFGMMPKKNVASWVS---LIDGFMRKGDLKKAGELFEQMPEKG---VVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292 (636)
Q Consensus 219 ~~~~~~m~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 292 (636)
+..|++....|+.+..+ ....+.+.|+.+.-..+...+-..+ ...|-.-+.......+++.|+.+-.+.++.+
T Consensus 252 ~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~- 330 (564)
T KOG1174|consen 252 EDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE- 330 (564)
T ss_pred HHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-
Confidence 99999888666554333 2334567778777776666554433 3445555556667788999999988887753
Q ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHH
Q 006672 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMI 369 (636)
Q Consensus 293 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 369 (636)
+-+...+..-..++...++.++|.-.|....... |.+...|..|+..|...|++.+|.-+-+.... .+..+.+.+.
T Consensus 331 ~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g 409 (564)
T KOG1174|consen 331 PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFG 409 (564)
T ss_pred cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhc
Confidence 2344455555566778899999998888877654 57888999999999999999988765544322 2333333332
Q ss_pred -HHHH-HcCChHHHHHHHHHHhHcCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhc
Q 006672 370 -WGLA-IHGRYEQAIQYFKKMMYSGTEPDG-TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446 (636)
Q Consensus 370 -~~~~-~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~ 446 (636)
..+. ...--++|.+++++.+. +.|+. ...+.+..-|...|..+++..++++... ..||....+.|.+.+.-.
T Consensus 410 ~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~---~~~D~~LH~~Lgd~~~A~ 484 (564)
T KOG1174|consen 410 TLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI---IFPDVNLHNHLGDIMRAQ 484 (564)
T ss_pred ceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh---hccccHHHHHHHHHHHHh
Confidence 1121 12234788888888877 78884 4667777888999999999999998875 578988999999999999
Q ss_pred CCchHHHHHHHHHHHHHhccCCCCch
Q 006672 447 GQDSQGYQNSQNSFTKLLQLKPKHPS 472 (636)
Q Consensus 447 g~~~~A~~~~~~~~~~~~~l~p~~~~ 472 (636)
+.+.+|++.|..+ +.++|+|..
T Consensus 485 Ne~Q~am~~y~~A----Lr~dP~~~~ 506 (564)
T KOG1174|consen 485 NEPQKAMEYYYKA----LRQDPKSKR 506 (564)
T ss_pred hhHHHHHHHHHHH----HhcCccchH
Confidence 9999999999854 467887643
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.8e-09 Score=114.49 Aligned_cols=244 Identities=11% Similarity=0.049 Sum_probs=170.1
Q ss_pred CHHHHHHHHhhCCCCC---hhhHHHHHHHHH---------hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 006672 245 DLKKAGELFEQMPEKG---VVSWTAMINGFS---------QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL 312 (636)
Q Consensus 245 ~~~~A~~~~~~~~~~~---~~~~~~li~~~~---------~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 312 (636)
++++|...|++..+.| ...|..+..+|. ..+++++|...+++..+.+ +-+...+..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCH
Confidence 4677888888776533 445555554443 2345788999998888764 34666777777778888999
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC--CC-hhcHHHHHHHHHHcCChHHHHHHHHHHh
Q 006672 313 EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--KD-LLTWTAMIWGLAIHGRYEQAIQYFKKMM 389 (636)
Q Consensus 313 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 389 (636)
++|...++.+++.+ |.+...+..+...|...|++++|...+++..+ |+ ...+..++..+...|++++|+..++++.
T Consensus 355 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l 433 (553)
T PRK12370 355 IVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELR 433 (553)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 99999999988876 56677788888889999999999999988775 33 2233444555667888999999999887
Q ss_pred HcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC
Q 006672 390 YSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLK 467 (636)
Q Consensus 390 ~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~ 467 (636)
+.. .|+ ...+..+..++...|+.++|...+.++.. ..|+ ....+.+...|.+.| ++|...++...+. .+..
T Consensus 434 ~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~-~~~~ 506 (553)
T PRK12370 434 SQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIST---QEITGLIAVNLLYAEYCQNS--ERALPTIREFLES-EQRI 506 (553)
T ss_pred Hhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH-hhHh
Confidence 642 354 34456666777889999999999988764 2343 344556666777777 4777777764433 2334
Q ss_pred CCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 468 PKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 468 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
|.++.. +...|.-.|+-+.+..+ +++.+.|
T Consensus 507 ~~~~~~---~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGL---LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchH---HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 444332 66677788888887777 7777655
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.4e-09 Score=109.64 Aligned_cols=235 Identities=14% Similarity=0.141 Sum_probs=159.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHC-----C-CCCCHHHHH-HHHHHHHhcCCcHHHHHHHHHHHHc-----C--CCC
Q 006672 264 WTAMINGFSQNGEAEKALAMFFQMLDA-----G-VRANDFTVV-SALSACAKVGALEAGVRVHNYISCN-----D--FGL 329 (636)
Q Consensus 264 ~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~ 329 (636)
...+...|...|+++.|..+++...+. | ..|...+.. .+...|...+++++|..+|+.++.. | .+.
T Consensus 202 ~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~ 281 (508)
T KOG1840|consen 202 LRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPA 281 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 333555666666666666666555442 1 122332222 2455566666666666666665531 1 122
Q ss_pred chhHHHHHhhHHhhcCCHHHHHHHHhhccC----------CChh-cHHHHHHHHHHcCChHHHHHHHHHHhHc---CCCC
Q 006672 330 KGAIGTALVDMYAKCGNIEAASLVFGETKE----------KDLL-TWTAMIWGLAIHGRYEQAIQYFKKMMYS---GTEP 395 (636)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p 395 (636)
-..+++.|..+|.+.|++++|...+++..+ +.+. ..+.++..+...+++++|..++++..+. -..+
T Consensus 282 va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~ 361 (508)
T KOG1840|consen 282 VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGE 361 (508)
T ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccc
Confidence 234556666677788887777766665442 1222 4566777788889999999998887652 1233
Q ss_pred C----HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhc----C-CCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Q 006672 396 D----GTVFLAILTACWYSGQVKLALNFFDSMRFDY----F-IEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQ 465 (636)
Q Consensus 396 ~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 465 (636)
+ ..++..+...|.+.|++++|.++|+++++.. + ..+. ...++.|...|.+.+++.+|.++|.++..-...
T Consensus 362 ~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~ 441 (508)
T KOG1840|consen 362 DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKL 441 (508)
T ss_pred cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 3 2488999999999999999999999886532 1 1222 557889999999999999999999988766655
Q ss_pred cCCCC---chhHHHHHHHHHHcCChhHHHHHHHHHH
Q 006672 466 LKPKH---PSSYVLLSNIYAAEGRWKDVARVRTLMQ 498 (636)
Q Consensus 466 l~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 498 (636)
..|.+ ..+|..|+.+|.+.|++++|.++.+...
T Consensus 442 ~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 442 CGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 55554 4578899999999999999999988765
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.2e-09 Score=105.57 Aligned_cols=219 Identities=15% Similarity=0.028 Sum_probs=155.4
Q ss_pred CCChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHH
Q 006672 274 NGEAEKALAMFFQMLDAG-VRAN--DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350 (636)
Q Consensus 274 ~g~~~~A~~l~~~m~~~g-~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 350 (636)
.+..+.++.-+.+++... ..|+ ...|......+...|+.+.|...|...++.. |.+...++.+...|...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 345677777777777532 2222 2446666667788888999988888888765 56788889999999999999999
Q ss_pred HHHHhhccC--C-ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhc
Q 006672 351 SLVFGETKE--K-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427 (636)
Q Consensus 351 ~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 427 (636)
...|++..+ | +..+|..+..++...|++++|++.|++..+ ..|+..........+...++.++|...|++...
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~-- 193 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE-- 193 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--
Confidence 999988865 3 456888888899999999999999999988 566643222222233456789999999976553
Q ss_pred CCCCChhHHHHHHHHHHhcCCchHHHHHHHHH---HHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 428 FIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNS---FTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 428 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
...|+...+ . ..+...|++.++ +.++.+ .+...++.|+.+.+|..++.+|.+.|++++|...|++..+.+
T Consensus 194 ~~~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 194 KLDKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hCCccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 223332222 2 233345666554 233332 233345567778899999999999999999999999998755
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.6e-11 Score=82.26 Aligned_cols=50 Identities=26% Similarity=0.557 Sum_probs=47.5
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006672 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308 (636)
Q Consensus 259 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 308 (636)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999874
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.1e-09 Score=98.19 Aligned_cols=193 Identities=12% Similarity=0.161 Sum_probs=140.8
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhH
Q 006672 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340 (636)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 340 (636)
...+..+...|...|++++|...+++..+.. +.+...+..+...+...|+++.|.+.+....+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3456667777777777777777777776643 3345566666677777777777777777777654 4455666777777
Q ss_pred HhhcCCHHHHHHHHhhccC-----CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHH
Q 006672 341 YAKCGNIEAASLVFGETKE-----KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVK 414 (636)
Q Consensus 341 ~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 414 (636)
|...|++++|.+.|++... .....+..+...+...|++++|...+++..+ ..|+ ...+..+...+...|+++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ--IDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCChHHHHHHHHHHHHcCCHH
Confidence 7888888888888877654 1334666777788888999999999988887 4444 456777778888889999
Q ss_pred HHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHH
Q 006672 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNS 459 (636)
Q Consensus 415 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 459 (636)
+|...+++.... .+.++..+..++..+...|+.++|..+.+.+
T Consensus 187 ~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 187 DARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999888753 3445667777888888889999888877644
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.2e-09 Score=114.03 Aligned_cols=213 Identities=14% Similarity=0.059 Sum_probs=165.5
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh---------cCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhc
Q 006672 275 GEAEKALAMFFQMLDAGVRAN-DFTVVSALSACAK---------VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344 (636)
Q Consensus 275 g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 344 (636)
+..++|+.+|++..+. .|+ ...+..+..++.. .+++++|...++.+++.. |.+...+..+..++...
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 3467999999999875 444 4455555444432 244789999999999876 66788889999999999
Q ss_pred CCHHHHHHHHhhccC--C-ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHH-HHHHHHHHHHhcCcHHHHHHHH
Q 006672 345 GNIEAASLVFGETKE--K-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFF 420 (636)
Q Consensus 345 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~ 420 (636)
|++++|...|++..+ | +...|..+...+...|++++|+..+++..+ +.|+.. .+..++..+...|++++|...+
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 999999999999775 3 456888899999999999999999999999 666643 3334455566789999999999
Q ss_pred HHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 421 DSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 421 ~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
+++.+. ..| ++..+..+..+|...|++++|.+.+++. ....|.+......++..|...| ++|...++.+.+
T Consensus 430 ~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 430 DELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEI----STQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh----hhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 988742 234 4566788899999999999999998754 3556777777888888888888 478887777665
Q ss_pred C
Q 006672 500 R 500 (636)
Q Consensus 500 ~ 500 (636)
.
T Consensus 502 ~ 502 (553)
T PRK12370 502 S 502 (553)
T ss_pred H
Confidence 3
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.6e-07 Score=90.54 Aligned_cols=425 Identities=12% Similarity=0.132 Sum_probs=276.1
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHhccCC-----CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHH
Q 006672 63 SRITTQLISSASLHKSIDYALSIFDHFT-----PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137 (636)
Q Consensus 63 ~~~~~~li~~~~~~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 137 (636)
+.+|-..+....++|++...+..|++.. ...-..|...+.-....+-++-++++|++.++ +.|.. -.--+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk--~~P~~--~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK--VAPEA--REEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh--cCHHH--HHHHHH
Confidence 3456667777788899999999998643 23456788888888889999999999999887 34443 556677
Q ss_pred HHHccCChHHHHHHHHHHHHhC------CCCChhHHHHHHHHHHhcCCh---HHHHHHHhhCCCCCCCCChhhHHHHHHH
Q 006672 138 SVASLSLLSLGRGLHCLIVKSG------VEYDAFVRVHLADMYVQLGKT---RGAFKVFDETPEKNKSESVLLWNVLING 208 (636)
Q Consensus 138 ~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~~~~~li~~ 208 (636)
.++..+++++|.+.+...+... .+.+-..|+-+-+..++.-+. -....+++.+...-...-...|.+|.+-
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 7888899999988887766331 245555676666666655332 2233445555433212224578888888
Q ss_pred HHhcCChHHHHHHHhhCCC--CChHHHHHHHHHHHhc----------------C------CHHHHHHHHhhCCCC-----
Q 006672 209 CSKIGYLRKAVELFGMMPK--KNVASWVSLIDGFMRK----------------G------DLKKAGELFEQMPEK----- 259 (636)
Q Consensus 209 ~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~----------------g------~~~~A~~~~~~~~~~----- 259 (636)
|.+.|.+++|..+|++... ..+.-++.+.+.|+.- | +++-.+.-|+.+.++
T Consensus 258 YIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l 337 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL 337 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH
Confidence 9999999999988877653 1222233333333221 1 122333334443321
Q ss_pred ----------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 006672 260 ----------GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN------DFTVVSALSACAKVGALEAGVRVHNYIS 323 (636)
Q Consensus 260 ----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~------~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 323 (636)
++..|..-+. ...|+..+-...|.+..+. +.|. ...|..+...|-..|+++.|+.+|+...
T Consensus 338 NsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 338 NSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 2344544333 3456778888888888763 3332 2356778888889999999999999998
Q ss_pred HcCCCCc---hhHHHHHhhHHhhcCCHHHHHHHHhhccC-C--------------------ChhcHHHHHHHHHHcCChH
Q 006672 324 CNDFGLK---GAIGTALVDMYAKCGNIEAASLVFGETKE-K--------------------DLLTWTAMIWGLAIHGRYE 379 (636)
Q Consensus 324 ~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--------------------~~~~~~~li~~~~~~g~~~ 379 (636)
+..++.- ..+|..-.++-.+..+++.|.++.++... | +...|...+..--..|-++
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 7665443 56777778888888999999998887542 1 3346777777777778889
Q ss_pred HHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh---cCCchHHHHHH
Q 006672 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR---VGQDSQGYQNS 456 (636)
Q Consensus 380 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~ 456 (636)
....+|+++++..+.......| ...-+-...-++++.+.+++-+.-+..+---+.|+..+.-+.+ .-.++.|..+|
T Consensus 495 stk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF 573 (835)
T KOG2047|consen 495 STKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF 573 (835)
T ss_pred HHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 9999999998865543222222 2222334566788889888776533333335677776655443 34688999999
Q ss_pred HHHHHHHhccCCC-Cc-hhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 457 QNSFTKLLQLKPK-HP-SSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 457 ~~~~~~~~~l~p~-~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
+++.+ .-|+ +. ..|...+..--+-|.-..|+.++++...
T Consensus 574 EqaL~----~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 574 EQALD----GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHHHh----cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 97764 3343 32 2344444445556888888889888654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.2e-09 Score=107.51 Aligned_cols=241 Identities=11% Similarity=0.076 Sum_probs=130.8
Q ss_pred HHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCC
Q 006672 115 SHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194 (636)
Q Consensus 115 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 194 (636)
.++-.|...|+.|+.+||..+|..|+..|+.+.|- +|..|.-...+.+..+++.++....+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 35566777788888888888888888888888777 7777777666777777788877777777766554
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHhh-CC-------------------------CCChHHHHHHHHHHHhcCCHHH
Q 006672 195 KSESVLLWNVLINGCSKIGYLRKAVELFGM-MP-------------------------KKNVASWVSLIDGFMRKGDLKK 248 (636)
Q Consensus 195 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~-------------------------~~~~~~~~~li~~~~~~g~~~~ 248 (636)
.|...+|..|..+|.+.||... ++..++ |. ......-.+.+....-.|-++.
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 6677788888888888887544 222222 11 0000111222333334455555
Q ss_pred HHHHHhhCCCCC-hhhHHHHHHHHHhCC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcC
Q 006672 249 AGELFEQMPEKG-VVSWTAMINGFSQNG-EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326 (636)
Q Consensus 249 A~~~~~~~~~~~-~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 326 (636)
+.+++..++... ..+.-..+.-+.... .+++-..+.+...+ .|++.+|..++.+....|+.+.|..++..|.+.|
T Consensus 158 llkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g 234 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG 234 (1088)
T ss_pred HHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence 555555554211 000000122222111 12222222222211 3566666666666666666666666666666666
Q ss_pred CCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC----CChhcHHHHHHHHHH
Q 006672 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKE----KDLLTWTAMIWGLAI 374 (636)
Q Consensus 327 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~ 374 (636)
++.+..-+-.|+-+ .++..-++.++..|.+ |+..|+.-.+..+..
T Consensus 235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 66665555555433 4444444444444432 455555544444444
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-07 Score=98.20 Aligned_cols=423 Identities=14% Similarity=0.073 Sum_probs=241.8
Q ss_pred CCCCChhHHHHHHHHhhcCCChHHHHHHhccCCCC---CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHH
Q 006672 58 NLFASSRITTQLISSASLHKSIDYALSIFDHFTPK---NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPF 134 (636)
Q Consensus 58 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 134 (636)
.+..++.+|..|.-++..+|+++.+-+.|++..+- ....|+.+-..|...|.-..|+.+.+.-....-.|+..+--.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 34568899999999999999999999999876532 345799999999999999999999987665332354433333
Q ss_pred H-HHHHH-ccCChHHHHHHHHHHHHhC--C--CCChhHHHHHHHHHHhc-----------CChHHHHHHHhhCCCCCCCC
Q 006672 135 V-SKSVA-SLSLLSLGRGLHCLIVKSG--V--EYDAFVRVHLADMYVQL-----------GKTRGAFKVFDETPEKNKSE 197 (636)
Q Consensus 135 l-l~~~~-~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~~~~~ 197 (636)
+ -+.|. +.+..+++...-.+++... . ...+..|-.+.-+|... ..-.++.+.+++..+.+ +.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~ 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PT 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CC
Confidence 3 34444 4567777777666666521 1 11222333333334322 11234555555554443 33
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHhhCC----CCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHH---HHHHH
Q 006672 198 SVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT---AMING 270 (636)
Q Consensus 198 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~li~~ 270 (636)
|..+.-.+.--|+..++.+.|.+..++.. ..+...|..|.-.+...+++.+|+.+.+...+.-..-++ .-+..
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 33333333334555566666666555544 234455555555566666666666665543321100000 00111
Q ss_pred HHhCCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH-c-CCCCchhHHHHHhhHHh---h
Q 006672 271 FSQNGEAEKALAMFFQMLDA--GVRANDFTVVSALSACAKVGALEAGVRVHNYISC-N-DFGLKGAIGTALVDMYA---K 343 (636)
Q Consensus 271 ~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~~~~li~~~~---~ 343 (636)
-..-++.++|+.....+... ...|-..+ ++-....+....+.- . .....+.++..+..... +
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~-----------~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~ 625 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQT-----------LDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLK 625 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhh-----------hhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhh
Confidence 12234555555544444321 00000000 000000011110000 0 00111122222211111 1
Q ss_pred cCCHHHHHHHHhhccCCC------hhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHH
Q 006672 344 CGNIEAASLVFGETKEKD------LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLA 416 (636)
Q Consensus 344 ~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 416 (636)
.-..+.....+...+.|+ ...|......+...++.++|...+.+... +.|- ...|......+...|..++|
T Consensus 626 ~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA 703 (799)
T KOG4162|consen 626 SAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEA 703 (799)
T ss_pred hcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHH
Confidence 111111111111222222 23566777788889999999988888877 5554 34555555677788999999
Q ss_pred HHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHH--HHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHH
Q 006672 417 LNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQ--NSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARV 493 (636)
Q Consensus 417 ~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~ 493 (636)
.+.|..... +.|+ +....++..++.+.|+..-|.. +.. ..++++|.++..|..|+.++.+.|+.++|.+.
T Consensus 704 ~~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~----dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaec 776 (799)
T KOG4162|consen 704 KEAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLS----DALRLDPLNHEAWYYLGEVFKKLGDSKQAAEC 776 (799)
T ss_pred HHHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHH----HHHhhCCCCHHHHHHHHHHHHHccchHHHHHH
Confidence 999988764 6665 6788999999999998777766 555 44578999999999999999999999999999
Q ss_pred HHHHHhCC
Q 006672 494 RTLMQRRS 501 (636)
Q Consensus 494 ~~~m~~~g 501 (636)
|....+..
T Consensus 777 f~aa~qLe 784 (799)
T KOG4162|consen 777 FQAALQLE 784 (799)
T ss_pred HHHHHhhc
Confidence 99887654
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-06 Score=88.35 Aligned_cols=422 Identities=11% Similarity=0.058 Sum_probs=204.1
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCCCCCcchHHH--HHHHHH--hCCCchHHHHHHHH
Q 006672 44 TKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNV--LIRGLA--ENSHFQSCISHFVF 119 (636)
Q Consensus 44 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~--li~~~~--~~g~~~~A~~~~~~ 119 (636)
+++|.+....++..+ +-++.++.+=+-++.+.+++++|+.+.+.-... .+++. +=.+|+ +.+..++|+..++
T Consensus 28 ~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dealk~~~- 103 (652)
T KOG2376|consen 28 YEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEALKTLK- 103 (652)
T ss_pred HHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHHHHHHh-
Confidence 888888888888876 446666667777788888899998766643321 12222 245554 5788888888877
Q ss_pred hHHCCCCCCcc-cHHHHHHHHHccCChHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCC
Q 006672 120 MLRLSVRPNRL-TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY-DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197 (636)
Q Consensus 120 m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 197 (636)
|..++.. +...-...|.+.+++++|..++..+.+.+.+. +...-..++.+-. .-.+. +.+..+. .|
T Consensus 104 ----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~~q~v~~---v~ 171 (652)
T KOG2376|consen 104 ----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-LLQSVPE---VP 171 (652)
T ss_pred ----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-HHHhccC---CC
Confidence 3334333 45445566788888999999998888876321 2222222222111 11111 2333332 11
Q ss_pred ChhhHHHH---HHHHHhcCChHHHHHHHhhCC--------CCC-----hH-----HHHHHHHHHHhcCCHHHHHHHHhhC
Q 006672 198 SVLLWNVL---INGCSKIGYLRKAVELFGMMP--------KKN-----VA-----SWVSLIDGFMRKGDLKKAGELFEQM 256 (636)
Q Consensus 198 ~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~--------~~~-----~~-----~~~~li~~~~~~g~~~~A~~~~~~~ 256 (636)
..+|..+ ...+...|++.+|+++++... ..| .. +-.-|...+-..|+.++|..++...
T Consensus 172 -e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 172 -EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred -cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3344433 334566788888888877662 111 11 1223334455566666666666655
Q ss_pred CCCC-------hhhHHHHHHHHHhCCChHH-HHHHHHHHHHCCCC----------CCHHHHHHHHHHHHhcCCcHHHHHH
Q 006672 257 PEKG-------VVSWTAMINGFSQNGEAEK-ALAMFFQMLDAGVR----------ANDFTVVSALSACAKVGALEAGVRV 318 (636)
Q Consensus 257 ~~~~-------~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~g~~----------p~~~t~~~ll~~~~~~~~~~~a~~~ 318 (636)
...+ .+.-|.|+..-....-++. ++..++........ -..+..+..+-. ...+.-+.+.++
T Consensus 251 i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~-l~tnk~~q~r~~ 329 (652)
T KOG2376|consen 251 IKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLA-LFTNKMDQVREL 329 (652)
T ss_pred HHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHH
Confidence 4322 1233444433333333331 22222221110000 000000000000 011122222222
Q ss_pred HHHHHHcCCCCchhHHHHHhhHHhhc--CCHHHHHHHHhhccC----CChhcHHHHHHHHHHcCChHHHHHHHH------
Q 006672 319 HNYISCNDFGLKGAIGTALVDMYAKC--GNIEAASLVFGETKE----KDLLTWTAMIWGLAIHGRYEQAIQYFK------ 386 (636)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~------ 386 (636)
...+. +..| ...+..++....++ .....|.+++....+ ...+.--.++......|+++.|++++.
T Consensus 330 ~a~lp--~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~ 406 (652)
T KOG2376|consen 330 SASLP--GMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESW 406 (652)
T ss_pred HHhCC--ccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh
Confidence 21111 1111 12222333222221 123444444444333 123344445555566677777777766
Q ss_pred --HHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCC-CCChhHHHHH----HHHHHhcCCchHHHHHHHHH
Q 006672 387 --KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI-EPSVKHHTVV----VNLLSRVGQDSQGYQNSQNS 459 (636)
Q Consensus 387 --~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~l----~~~~~~~g~~~~A~~~~~~~ 459 (636)
...+.+..| .+...+..-+.+.++-+.|..++.+....+.. .+......++ +..--+.|+-++|..+++
T Consensus 407 ~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~le-- 482 (652)
T KOG2376|consen 407 KSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLE-- 482 (652)
T ss_pred hhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHH--
Confidence 444433333 33334445556666666666666666532221 1222222222 223335677777776666
Q ss_pred HHHHhccCCCCchhHHHHHHHHHHcCChhHHHHH
Q 006672 460 FTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARV 493 (636)
Q Consensus 460 ~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~ 493 (636)
.+++.+|+|......+..+|++.. .+.|..+
T Consensus 483 --el~k~n~~d~~~l~~lV~a~~~~d-~eka~~l 513 (652)
T KOG2376|consen 483 --ELVKFNPNDTDLLVQLVTAYARLD-PEKAESL 513 (652)
T ss_pred --HHHHhCCchHHHHHHHHHHHHhcC-HHHHHHH
Confidence 344667777777777777776543 4444443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.7e-08 Score=103.50 Aligned_cols=231 Identities=12% Similarity=0.069 Sum_probs=170.2
Q ss_pred CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHc-----C--CCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC-------C
Q 006672 295 NDFTVVSALSACAKVGALEAGVRVHNYISCN-----D--FGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-------K 360 (636)
Q Consensus 295 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~ 360 (636)
-..|...+...|...|+++.|..+++..++. | .+.=....+.+..+|...+++++|..+|+++.. +
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3456777889999999999999999987754 2 112223345578899999999999999988764 1
Q ss_pred ----ChhcHHHHHHHHHHcCChHHHHHHHHHHhH-----cCCCCC-H-HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcC-
Q 006672 361 ----DLLTWTAMIWGLAIHGRYEQAIQYFKKMMY-----SGTEPD-G-TVFLAILTACWYSGQVKLALNFFDSMRFDYF- 428 (636)
Q Consensus 361 ----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~-~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~- 428 (636)
-..+++.|..+|...|++++|...+++..+ .|..+. . ..++.+...|...+.+++|..+++...+.+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 234788888999999999999888888654 122222 2 2566777789999999999999987764332
Q ss_pred -CCCC----hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC----CCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 429 -IEPS----VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLK----PKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 429 -~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
..++ ..+|+.|..+|...|++++|+++++++.++.-+.. +.....++.|+..|.+.+++++|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 2222 56899999999999999999999999988875544 33345788999999999999999999998765
Q ss_pred CCCccCCeeeEEEECCEEEEecCCCcccHHHHHHHHHHHHHHH
Q 006672 500 RSIKKDPGWSYIEVNGHVHRFEAGGHKLAKEIHSKLEDIMAGA 542 (636)
Q Consensus 500 ~g~~~~~~~s~i~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~ 542 (636)
-. +.-| -+||.....|..|..+.+.|
T Consensus 438 i~--~~~g---------------~~~~~~~~~~~nL~~~Y~~~ 463 (508)
T KOG1840|consen 438 IM--KLCG---------------PDHPDVTYTYLNLAALYRAQ 463 (508)
T ss_pred HH--HHhC---------------CCCCchHHHHHHHHHHHHHc
Confidence 32 1110 12666666666655555543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.6e-07 Score=85.12 Aligned_cols=264 Identities=11% Similarity=0.032 Sum_probs=185.3
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHH---HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006672 227 KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM---INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303 (636)
Q Consensus 227 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 303 (636)
..|+.....+...+...|+.++|...|++...-|..+...| ...+.+.|+.++...+...+.... .-....|..-+
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 45677778888888888888888888887765554433332 233456777777777777766432 12222232233
Q ss_pred HHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHH
Q 006672 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQ 380 (636)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 380 (636)
...-...+++.|..+-+..++.+ +.+...+-.-...+...|+.++|.-.|+.... -+..+|..|+.+|...|++.+
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 33345567777777777776554 44555555555677788999999988887653 478899999999999999999
Q ss_pred HHHHHHHHhHcCCCCCHHHHHHHH-HHHH-hcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHH
Q 006672 381 AIQYFKKMMYSGTEPDGTVFLAIL-TACW-YSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQ 457 (636)
Q Consensus 381 A~~~~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (636)
|..+-+...+. ...+..+...+. ..|. ...--++|.+++++..+ ++|+ ...-+.+..++.+.|+.++++.+++
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 99888776652 222344554442 2333 23345788899887763 6777 4566778899999999999999998
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 458 NSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 458 ~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
+.. ..-| |....+.|+..+.....+.+|...|....+.+
T Consensus 463 ~~L----~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 463 KHL----IIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHH----hhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 654 3345 77889999999999999999999999887754
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.7e-07 Score=82.16 Aligned_cols=307 Identities=12% Similarity=0.090 Sum_probs=141.9
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHHCCCCC-CcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHH-HHHHHH
Q 006672 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRP-NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV-HLADMY 174 (636)
Q Consensus 97 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~~ 174 (636)
+++.+..+.+..++..|++++..-.+.. | +....+.+-..|....++..|...++++-..- |...-|. --...+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHH
Confidence 3444444555556666666655544432 3 33444444444455555555655555554432 2221111 112233
Q ss_pred HhcCChHHHHHHHhhCCCCCCCCChhhHHHHH--HHHHhcCChHHHHHHHhhCC-CCChHHHHHHHHHHHhcCCHHHHHH
Q 006672 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLI--NGCSKIGYLRKAVELFGMMP-KKNVASWVSLIDGFMRKGDLKKAGE 251 (636)
Q Consensus 175 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~li~~~~~~g~~~~A~~ 251 (636)
.+.+.+.+|+++...|... ++...-..-+ ......+++..+..++++.. +.+..+.+...-...+.|+++.|.+
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHH
Confidence 3455555555555555421 1111111111 11223444444444444444 2333344444444444455555544
Q ss_pred HHhhCCCCC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCcHHHHHHHHHHHHcC
Q 006672 252 LFEQMPEKG----VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV-VSALSACAKVGALEAGVRVHNYISCND 326 (636)
Q Consensus 252 ~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~ 326 (636)
-|+...+-+ ...||.-+ +..+.|+++.|+++..+..+.|++-.+..- ...... .....+..-..++...
T Consensus 166 kFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~teg-iDvrsvgNt~~lh~Sa---- 239 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEG-IDVRSVGNTLVLHQSA---- 239 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceecc-CchhcccchHHHHHHH----
Confidence 444443211 23333222 222334444455544444444432111000 000000 0000000000000000
Q ss_pred CCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCC-----ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHH
Q 006672 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK-----DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVF 400 (636)
Q Consensus 327 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~ 400 (636)
-+..+|.-...+.+.|+.+.|.+.+-.|+.+ |++|...+.-.= ..+++.+..+-++-+... .|- ..||
T Consensus 240 ---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~--nPfP~ETF 313 (459)
T KOG4340|consen 240 ---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ--NPFPPETF 313 (459)
T ss_pred ---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc--CCCChHHH
Confidence 0122333344467889999999999999863 666665554322 245566666666666663 443 5699
Q ss_pred HHHHHHHHhcCcHHHHHHHHHH
Q 006672 401 LAILTACWYSGQVKLALNFFDS 422 (636)
Q Consensus 401 ~~ll~a~~~~g~~~~a~~~~~~ 422 (636)
..++-.|++..-++.|-.++.+
T Consensus 314 ANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 314 ANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHhhhHHHhHHHHHHhh
Confidence 9999999999988888887754
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.5e-08 Score=93.94 Aligned_cols=223 Identities=12% Similarity=0.063 Sum_probs=186.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcC
Q 006672 234 VSLIDGFMRKGDLKKAGELFEQMPE--KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV-VSALSACAKVG 310 (636)
Q Consensus 234 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~~~~~~~ 310 (636)
+-+..+|.+.|.+.+|.+.|+.... +-+.||-.|-.+|.+..+++.|+.+|.+-.+. .|-.+|| ..+.+.+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 5677888888999999988887653 45788988999999999999999999988875 4555555 45667788889
Q ss_pred CcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHH
Q 006672 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKK 387 (636)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 387 (636)
+.+.+.++++.+.+.. +.+++...++...|.-.++.|.|.+.++++.+ .+...|+.+.-+|.-.++++-++.-|++
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 9999999999999875 67788888888889999999999999998876 5777899999999999999999999999
Q ss_pred HhHcCCCCCH--HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 006672 388 MMYSGTEPDG--TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFT 461 (636)
Q Consensus 388 m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 461 (636)
....-..|+. ..|..+.......|++..|.+.|+-... .-....+.++.|.-+-.|.|++++|..+++.+..
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 9886555663 4788888888889999999999998764 2334578899999999999999999999986653
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.5e-06 Score=90.54 Aligned_cols=295 Identities=11% Similarity=0.031 Sum_probs=165.1
Q ss_pred HHhhcCCChHHHHHHhccCCC--CCcc-hHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHH----c--
Q 006672 71 SSASLHKSIDYALSIFDHFTP--KNLH-IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA----S-- 141 (636)
Q Consensus 71 ~~~~~~g~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~----~-- 141 (636)
..+...|+++.|+..++.-.. .|.. ........+.+.|+.++|..+|..+.+.+ |+...|-..+..+. .
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 445677888888888865442 2333 34455567778888888888888888753 77777766655554 1
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh-HHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHH
Q 006672 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKT-RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220 (636)
Q Consensus 142 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 220 (636)
..+.+...++++.+...- |.....-.+.-.+.....+ ..+...+..+...|+|+ +++.+-..|......+-..+
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 123455566666665543 2222211121112111122 23333444455445332 33333333332222211111
Q ss_pred HHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHH-hh-CCCCCh--hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-
Q 006672 221 LFGMMPKKNVASWVSLIDGFMRKGDLKKAGELF-EQ-MPEKGV--VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN- 295 (636)
Q Consensus 221 ~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~-~~~~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~- 295 (636)
+ +..|...-........- .. -..|.. .++.-+...|-..|++++|++++++.++. .|+
T Consensus 165 l---------------~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~ 227 (517)
T PF12569_consen 165 L---------------VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTL 227 (517)
T ss_pred H---------------HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCc
Confidence 1 11111110000000000 00 011222 24455677788888888888888888875 344
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCCh----------hcH
Q 006672 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL----------LTW 365 (636)
Q Consensus 296 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----------~~~ 365 (636)
...|..-...+-+.|++.+|.+.++...+.. ..|..+-+-.+..+.++|++++|.+++.....++. ..|
T Consensus 228 ~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~W 306 (517)
T PF12569_consen 228 VELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMW 306 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHH
Confidence 5567777777888888888888888887765 45667777777788888888888888776665431 123
Q ss_pred --HHHHHHHHHcCChHHHHHHHHHHhH
Q 006672 366 --TAMIWGLAIHGRYEQAIQYFKKMMY 390 (636)
Q Consensus 366 --~~li~~~~~~g~~~~A~~~~~~m~~ 390 (636)
.....+|.+.|++..|++-|....+
T Consensus 307 f~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 307 FETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3345678888888888776665544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1e-05 Score=82.40 Aligned_cols=437 Identities=11% Similarity=0.060 Sum_probs=216.3
Q ss_pred HHHHHHHhcCC--hHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCC---CCCcchHHHHHHHHHhC
Q 006672 33 HIISLIHSSNS--TKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT---PKNLHIFNVLIRGLAEN 107 (636)
Q Consensus 33 ~~~~~l~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~ 107 (636)
-|-.++...-. ...+..+.+.+++ +.+-.+.+....--.+...|+.++|........ ..+.+.|..+.-.+...
T Consensus 10 lF~~~lk~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 10 LFRRALKCYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 34555554433 5666666666666 333333333333334566789999988877554 44667899888888888
Q ss_pred CCchHHHHHHHHhHHCCCCCCcc-cHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 006672 108 SHFQSCISHFVFMLRLSVRPNRL-TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186 (636)
Q Consensus 108 g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 186 (636)
.++++|+..|+.... +.||.. .|.-+--.-++.++++.......++.+.. +.....|..+..++.-.|+...|..+
T Consensus 89 K~Y~eaiKcy~nAl~--~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALK--IEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887 446553 33322223345677777777666666652 34455677777777788888888888
Q ss_pred HhhCCCCC-CCCChhhHHHHH------HHHHhcCChHHHHHHHhhCCCC--C-hHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 006672 187 FDETPEKN-KSESVLLWNVLI------NGCSKIGYLRKAVELFGMMPKK--N-VASWVSLIDGFMRKGDLKKAGELFEQM 256 (636)
Q Consensus 187 ~~~m~~~~-~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 256 (636)
.++..+.. -.|+...+.-.. ....+.|..++|++-+..-... | ...--.-...+.+.+++++|..++..+
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~L 245 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRL 245 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHH
Confidence 87765443 134444443332 2334456666666555444321 1 112223334455556666666665555
Q ss_pred CCC--ChhhHH-HHHHHHHhCCChHHHH-HHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCcHHHHHHHHHHHHcCCCCch
Q 006672 257 PEK--GVVSWT-AMINGFSQNGEAEKAL-AMFFQMLDAGVRANDFTVV-SALSACAKVGALEAGVRVHNYISCNDFGLKG 331 (636)
Q Consensus 257 ~~~--~~~~~~-~li~~~~~~g~~~~A~-~l~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 331 (636)
..+ |..-|+ .+..++.+-.+.-+++ .+|....+. .|...... .=++......-.+....++....+.|+++
T Consensus 246 l~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~-- 321 (700)
T KOG1156|consen 246 LERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS-- 321 (700)
T ss_pred HhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc--
Confidence 432 222222 2222332222222222 334333321 11110000 00111111111222233333344444332
Q ss_pred hHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHH--HHHHHHHHHHh
Q 006672 332 AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT--VFLAILTACWY 409 (636)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~ 409 (636)
++..+...|-.-...+ ++++ ++..|...=.........+.- .--.|... |+..+...+-+
T Consensus 322 -vf~dl~SLyk~p~k~~----~le~-----------Lvt~y~~~L~~~~~f~~~D~~--~~E~PttllWt~y~laqh~D~ 383 (700)
T KOG1156|consen 322 -VFKDLRSLYKDPEKVA----FLEK-----------LVTSYQHSLSGTGMFNFLDDG--KQEPPTTLLWTLYFLAQHYDK 383 (700)
T ss_pred -hhhhhHHHHhchhHhH----HHHH-----------HHHHHHhhcccccCCCccccc--ccCCchHHHHHHHHHHHHHHH
Confidence 2222222221111000 1110 001110000000000000000 00133333 34445556667
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChh
Q 006672 410 SGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWK 488 (636)
Q Consensus 410 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~ 488 (636)
.|+++.|..+.+..+. ..|+ ++.|..-...+...|.+++|..+++++. +++-.|...-.--++-..++.+.+
T Consensus 384 ~g~~~~A~~yId~AId---HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~----elD~aDR~INsKcAKYmLrAn~i~ 456 (700)
T KOG1156|consen 384 LGDYEVALEYIDLAID---HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQ----ELDTADRAINSKCAKYMLRANEIE 456 (700)
T ss_pred cccHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHH----hccchhHHHHHHHHHHHHHccccH
Confidence 7777777777776652 3454 5566666677777777777777776443 445444443334555556677777
Q ss_pred HHHHHHHHHHhCCC
Q 006672 489 DVARVRTLMQRRSI 502 (636)
Q Consensus 489 ~A~~~~~~m~~~g~ 502 (636)
+|.++.....+.|.
T Consensus 457 eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 457 EAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHhhhccc
Confidence 77777776666553
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.00 E-value=4e-08 Score=87.20 Aligned_cols=164 Identities=16% Similarity=0.125 Sum_probs=137.8
Q ss_pred HHHHHhhHHhhcCCHHHHHHHHhhccCC---ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHH
Q 006672 333 IGTALVDMYAKCGNIEAASLVFGETKEK---DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACW 408 (636)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~ 408 (636)
+..-|.-.|...|+...|..-+++..+. +..+|..+...|.+.|+.+.|.+-|++... +.|+ ....|....-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHH
Confidence 3355677889999999999999988863 345888999999999999999999999998 6776 457777777778
Q ss_pred hcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChh
Q 006672 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWK 488 (636)
Q Consensus 409 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~ 488 (636)
..|.+++|.+.|++...+-...--..+|..++-+-.+.|+.+.|.+.++++. +++|+.+.+...+.....+.|++-
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL----~~dp~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRAL----ELDPQFPPALLELARLHYKAGDYA 190 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHH----HhCcCCChHHHHHHHHHHhcccch
Confidence 8899999999999998644444446788999999999999999999998554 679999999999999999999999
Q ss_pred HHHHHHHHHHhCCC
Q 006672 489 DVARVRTLMQRRSI 502 (636)
Q Consensus 489 ~A~~~~~~m~~~g~ 502 (636)
.|...++.....+.
T Consensus 191 ~Ar~~~~~~~~~~~ 204 (250)
T COG3063 191 PARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHHhccc
Confidence 99999998887764
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.9e-06 Score=79.93 Aligned_cols=383 Identities=12% Similarity=0.126 Sum_probs=215.1
Q ss_pred HHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHH-HHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 006672 101 IRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS-KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179 (636)
Q Consensus 101 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 179 (636)
+.-+..+.++..|+.+++--...+-. .......-| ..+...|++++|...+..+... -.++..++..|.-.+.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~E-EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDRE-EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchh-hhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHH
Confidence 66777788999999998876543321 112333333 3445889999999999888774 36666777777777777889
Q ss_pred hHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 006672 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259 (636)
Q Consensus 180 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 259 (636)
+.+|..+-...+ .+...-..|...-.+.++-++-..+-..+. ....-.-+|..+.-..-.+.+|++++.++...
T Consensus 107 Y~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~Lq-D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 107 YIEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQ-DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHh-hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999988877654 233344445555556666555555444433 22344445555555556788999999988754
Q ss_pred C--hhhHHH-HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--c--CCcHH--HHH----------HHH
Q 006672 260 G--VVSWTA-MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK--V--GALEA--GVR----------VHN 320 (636)
Q Consensus 260 ~--~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~--~--~~~~~--a~~----------~~~ 320 (636)
+ ....|. +.-+|.+..-++-+.+++.--.+. -||+. +..=+.+|.. . |+..+ -.. .-+
T Consensus 181 n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdSt-iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~ 257 (557)
T KOG3785|consen 181 NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDST-IAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIE 257 (557)
T ss_pred ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcH-HHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHH
Confidence 4 334443 345677777788787777766654 33432 2222222211 1 11110 001 111
Q ss_pred HHHHcCC-----------------CCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcH------------------
Q 006672 321 YISCNDF-----------------GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW------------------ 365 (636)
Q Consensus 321 ~~~~~~~-----------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~------------------ 365 (636)
.+.+.++ ..-+..-..|+-.|.+.+++.+|..+.++....++.-|
T Consensus 258 ~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSre 337 (557)
T KOG3785|consen 258 YLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSRE 337 (557)
T ss_pred HHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHH
Confidence 1221111 01122334566678889999999888887765332222
Q ss_pred -------------------------HHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Q 006672 366 -------------------------TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF 420 (636)
Q Consensus 366 -------------------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 420 (636)
.+|.+.+.-..++++.+..+.....--.. |..--..+..|.+..|.+.+|+++|
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHH
Confidence 22233333333334444443333332111 1111223456667777888888877
Q ss_pred HHhHhhcCCCCChhHH-HHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCc-hhHHHHHHHHHHcCChhHHHHHHHHHH
Q 006672 421 DSMRFDYFIEPSVKHH-TVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHP-SSYVLLSNIYAAEGRWKDVARVRTLMQ 498 (636)
Q Consensus 421 ~~m~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~ 498 (636)
-++.. ..+ .+..+| ..|...|.+.++.+-|.+++-++- .|.+. .....+++-|.+.+.+=-|.+.|+.+.
T Consensus 417 ~~is~-~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~------t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE 488 (557)
T KOG3785|consen 417 IRISG-PEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTN------TPSERFSLLQLIANDCYKANEFYYAAKAFDELE 488 (557)
T ss_pred hhhcC-hhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcC------CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 66542 222 233344 445577788888888877764211 12222 234456677778888777788888777
Q ss_pred hCCCc
Q 006672 499 RRSIK 503 (636)
Q Consensus 499 ~~g~~ 503 (636)
..+..
T Consensus 489 ~lDP~ 493 (557)
T KOG3785|consen 489 ILDPT 493 (557)
T ss_pred ccCCC
Confidence 65443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.8e-05 Score=79.78 Aligned_cols=407 Identities=11% Similarity=0.095 Sum_probs=250.5
Q ss_pred HHHHHhhcCCChHHHHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHH--HHHHHH--
Q 006672 68 QLISSASLHKSIDYALSIFDHFT---PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPF--VSKSVA-- 140 (636)
Q Consensus 68 ~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~--ll~~~~-- 140 (636)
+=++.+...|++++|.+..+++. +.+...+..-+-++.+.+++++|+.+.+.-.. ..+++. +=++|+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHH
Confidence 34566778899999998887665 45666677777789999999999966554221 111222 235554
Q ss_pred ccCChHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCCh--hhHHHHHHHHHhcCChHH
Q 006672 141 SLSLLSLGRGLHCLIVKSGVEYD-AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV--LLWNVLINGCSKIGYLRK 217 (636)
Q Consensus 141 ~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~ 217 (636)
+.+..++|...+. |..++ ..+...-...+.+.|++++|.++|+.+.+.+ .++. ..-..++.+-. .-.
T Consensus 91 rlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~-~dd~d~~~r~nl~a~~a----~l~ 160 (652)
T KOG2376|consen 91 RLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN-SDDQDEERRANLLAVAA----ALQ 160 (652)
T ss_pred HcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHH----hhh
Confidence 7788999988887 33333 3355556677889999999999999997555 2221 12222222211 112
Q ss_pred HHHHHhhCC---CCChHHHHHHHHHHHhcCCHHHHHHHHhhC--------CCCC-----h-----hhHHHHHHHHHhCCC
Q 006672 218 AVELFGMMP---KKNVASWVSLIDGFMRKGDLKKAGELFEQM--------PEKG-----V-----VSWTAMINGFSQNGE 276 (636)
Q Consensus 218 A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~-----~-----~~~~~li~~~~~~g~ 276 (636)
+. +.+... +.+-..+......+...|++.+|+++++.. .+.| . ..--.|...+...|+
T Consensus 161 ~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 161 VQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred HH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 21 233333 233344445556678899999999999877 2221 1 123345667788999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHhcCCcHH--------------HHHHHHHHHHcCCCCchhHHHHHhh
Q 006672 277 AEKALAMFFQMLDAGVRANDFTVVSA---LSACAKVGALEA--------------GVRVHNYISCNDFGLKGAIGTALVD 339 (636)
Q Consensus 277 ~~~A~~l~~~m~~~g~~p~~~t~~~l---l~~~~~~~~~~~--------------a~~~~~~~~~~~~~~~~~~~~~li~ 339 (636)
.++|..++...+... ++|....... |.+.....++.. +......+. .........-+.++.
T Consensus 240 t~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls-~~qk~~i~~N~~lL~ 317 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLS-KKQKQAIYRNNALLA 317 (652)
T ss_pred hHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 999999999998875 4554322222 122222211111 111111111 111112223355666
Q ss_pred HHhhcCCHHHHHHHHhhccCCC-hhcHHHHHH-HHHH-cCChHHHHHHHHHHhHcCCCCCH--HHHHHHHHHHHhcCcHH
Q 006672 340 MYAKCGNIEAASLVFGETKEKD-LLTWTAMIW-GLAI-HGRYEQAIQYFKKMMYSGTEPDG--TVFLAILTACWYSGQVK 414 (636)
Q Consensus 340 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~-~~~~-~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~ 414 (636)
+|. +..+.+.++-...+... ...+.+++. ++.. .....+|.+++...-+ -.|.. ......+......|+++
T Consensus 318 l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 318 LFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred HHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHH
Confidence 664 55678888887777632 333444443 3322 2347788888887766 34443 34445556677899999
Q ss_pred HHHHHHH--------HhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCc---hhHHHHHHHHHH
Q 006672 415 LALNFFD--------SMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHP---SSYVLLSNIYAA 483 (636)
Q Consensus 415 ~a~~~~~--------~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~---~~~~~l~~~~~~ 483 (636)
.|.+++. .+.. .+ -.+.+-..++.+|.+.+.-+.|.+++.++......-.+... ..+..++..-.+
T Consensus 394 ~A~~il~~~~~~~~ss~~~-~~--~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr 470 (652)
T KOG2376|consen 394 VALEILSLFLESWKSSILE-AK--HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLR 470 (652)
T ss_pred HHHHHHHHHhhhhhhhhhh-hc--cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHh
Confidence 9999998 5542 33 34455577889999999999999999988876655444332 234445555667
Q ss_pred cCChhHHHHHHHHHHhC
Q 006672 484 EGRWKDVARVRTLMQRR 500 (636)
Q Consensus 484 ~g~~~~A~~~~~~m~~~ 500 (636)
.|+-++|..+++++.+.
T Consensus 471 ~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 471 HGNEEEASSLLEELVKF 487 (652)
T ss_pred cCchHHHHHHHHHHHHh
Confidence 89999999999998873
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.1e-06 Score=90.93 Aligned_cols=418 Identities=16% Similarity=0.099 Sum_probs=260.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCC--C--CC-cchHHHHHHHHHh-
Q 006672 33 HIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT--P--KN-LHIFNVLIRGLAE- 106 (636)
Q Consensus 33 ~~~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~--~~-~~~~~~li~~~~~- 106 (636)
.+.-.+..||.++.+.+.|++....-+. ....|+.+-..|..+|.-..|..+++.-. . |+ +..+-..-..|.+
T Consensus 328 ~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~ 406 (799)
T KOG4162|consen 328 HLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIER 406 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhc
Confidence 4566677788899999999988775433 55678889999999999999999997543 2 22 2323222233433
Q ss_pred CCCchHHHHHHHHhHHC--CCC--CCcccHHHHHHHHHc----cC-------ChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 006672 107 NSHFQSCISHFVFMLRL--SVR--PNRLTYPFVSKSVAS----LS-------LLSLGRGLHCLIVKSGVEYDAFVRVHLA 171 (636)
Q Consensus 107 ~g~~~~A~~~~~~m~~~--g~~--p~~~t~~~ll~~~~~----~~-------~~~~a~~~~~~~~~~g~~~~~~~~~~li 171 (636)
.+..++++.+-.+.... +.. .....|..+--+|.. .. ...++.+.++..++.+. .|+.+.-.+.
T Consensus 407 l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~-~dp~~if~la 485 (799)
T KOG4162|consen 407 LKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP-TDPLVIFYLA 485 (799)
T ss_pred hhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC-CCchHHHHHH
Confidence 46777877777766651 111 122233333333321 11 13455667777766552 2333333344
Q ss_pred HHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCC---CChHHHHHHHHHHHhcCCHHH
Q 006672 172 DMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK---KNVASWVSLIDGFMRKGDLKK 248 (636)
Q Consensus 172 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~ 248 (636)
--|+..++++.|.+...+..+.+-..+...|..+.-.+...+++.+|+.+.+.... .|......-+..-...++.++
T Consensus 486 lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~ 565 (799)
T KOG4162|consen 486 LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREE 565 (799)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHH
Confidence 56888999999999999988875578899999999999999999999999877652 122222222222233556666
Q ss_pred HHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHH
Q 006672 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA--GVRANDFTVVSALSACAKVG---ALEAGVRVHNYIS 323 (636)
Q Consensus 249 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~ 323 (636)
|......+.. .|... .+..+.++-...+++...+.-. ...-...|+..+..-....+ ..+.. +.
T Consensus 566 ~l~t~~~~L~----~we~~-~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~------Lp 634 (799)
T KOG4162|consen 566 ALDTCIHKLA----LWEAE-YGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK------LP 634 (799)
T ss_pred HHHHHHHHHH----HHHhh-hhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc------cC
Confidence 6555444321 11110 0111222223333333333211 11111223332222221111 01100 11
Q ss_pred HcCCC--Cc------hhHHHHHhhHHhhcCCHHHHHHHHhhccCC---ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcC
Q 006672 324 CNDFG--LK------GAIGTALVDMYAKCGNIEAASLVFGETKEK---DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392 (636)
Q Consensus 324 ~~~~~--~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 392 (636)
+.... |+ ...|....+.+.+.+..++|...+.+...- ....|......+...|+.++|.+.|.....
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~-- 712 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA-- 712 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--
Confidence 11111 11 235566777888889999998777776653 345677777778889999999999999988
Q ss_pred CCCCHH-HHHHHHHHHHhcCcHHHHHH--HHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCC
Q 006672 393 TEPDGT-VFLAILTACWYSGQVKLALN--FFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKP 468 (636)
Q Consensus 393 ~~p~~~-t~~~ll~a~~~~g~~~~a~~--~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p 468 (636)
+.|+.+ ...++...+...|+..-|.. ++..+.+ +.| +.+.|-.++..+.+.|+.++|.+.|..+. ++++
T Consensus 713 ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr---~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~----qLe~ 785 (799)
T KOG4162|consen 713 LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR---LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL----QLEE 785 (799)
T ss_pred cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHH----hhcc
Confidence 889854 88888899999998777777 8888875 444 58899999999999999999999998554 5666
Q ss_pred CCch
Q 006672 469 KHPS 472 (636)
Q Consensus 469 ~~~~ 472 (636)
.+|.
T Consensus 786 S~PV 789 (799)
T KOG4162|consen 786 SNPV 789 (799)
T ss_pred CCCc
Confidence 5553
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.6e-06 Score=87.26 Aligned_cols=241 Identities=15% Similarity=0.146 Sum_probs=130.1
Q ss_pred HHhcCCHHHHHHHHhhCCCCChh--hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHH
Q 006672 240 FMRKGDLKKAGELFEQMPEKGVV--SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317 (636)
Q Consensus 240 ~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 317 (636)
.....++.+|+.+++.+...++. -|..+.+.|...|+++.|.++|-+.- .+...|..|.+.|+++.|.+
T Consensus 742 ai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHH
Confidence 34455666666677666655533 35566677777777777777764321 23445566777777777766
Q ss_pred HHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-
Q 006672 318 VHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD- 396 (636)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~- 396 (636)
+-.+.. |.......|-+-..-+-+.|++.+|+++|-.+.+|+. .|..|-++|..+..+++.++- .|+
T Consensus 813 la~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~-----h~d~ 880 (1636)
T KOG3616|consen 813 LAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH-----HGDH 880 (1636)
T ss_pred HHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-----Chhh
Confidence 654432 3334455555555666667777777777776666654 355666666666666665542 222
Q ss_pred -HHHHHHHHHHHHhcCcHHHHHHHHHHhH-----------------------hhcCCCCC---hhHH------HHHHHHH
Q 006672 397 -GTVFLAILTACWYSGQVKLALNFFDSMR-----------------------FDYFIEPS---VKHH------TVVVNLL 443 (636)
Q Consensus 397 -~~t~~~ll~a~~~~g~~~~a~~~~~~m~-----------------------~~~~~~p~---~~~~------~~l~~~~ 443 (636)
..|-..+..-+...|++..|..-|-+.. .+.|-... ...| .+-+.++
T Consensus 881 l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkll 960 (1636)
T KOG3616|consen 881 LHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLL 960 (1636)
T ss_pred hhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHH
Confidence 1233333333444444444443332221 01111100 0111 1234455
Q ss_pred HhcCCchHHHHHHH------HHHHH-HhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 444 SRVGQDSQGYQNSQ------NSFTK-LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 444 ~~~g~~~~A~~~~~------~~~~~-~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
.+.|.+++|.++-- -+.+- -+....+-+....-++.-+...|++++|-+.+-+..+.+
T Consensus 961 nk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 961 NKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred HhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 55666655555432 00000 011122345567777888888999999988877766544
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.8e-07 Score=81.93 Aligned_cols=189 Identities=13% Similarity=0.127 Sum_probs=149.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHh
Q 006672 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342 (636)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 342 (636)
+...|.-+|.+.|+...|..-+++.++.. +-+..++..+...|.+.|..+.|.+.|+..++.. +.+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 45567788999999999999999988864 4456778888888888999999999998888765 667788888888888
Q ss_pred hcCCHHHHHHHHhhccC-C----ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHH
Q 006672 343 KCGNIEAASLVFGETKE-K----DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLA 416 (636)
Q Consensus 343 ~~g~~~~A~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 416 (636)
..|++++|...|++... | ...+|..+.-+..+.|+.+.|...|++.++ ..|+ +.+...+.......|++-.|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHH
Confidence 88999999988888765 3 345788888888888999999999988888 5666 55777788888888888888
Q ss_pred HHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHH
Q 006672 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQ 457 (636)
Q Consensus 417 ~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (636)
..+++.... +..++.+.....|..-.+.|+-+.|.+.=.
T Consensus 193 r~~~~~~~~--~~~~~A~sL~L~iriak~~gd~~~a~~Y~~ 231 (250)
T COG3063 193 RLYLERYQQ--RGGAQAESLLLGIRIAKRLGDRAAAQRYQA 231 (250)
T ss_pred HHHHHHHHh--cccccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 888888774 334777777777777777888777665543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.2e-07 Score=89.41 Aligned_cols=198 Identities=9% Similarity=-0.081 Sum_probs=121.7
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHH
Q 006672 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341 (636)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 341 (636)
..|..+...|...|+.++|...|++..+.. +.+...|..+...+...|+++.|...++..++.. |.+...+..+..++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 456666777777777777777777777653 3355667777777777777777777777777654 44556667777777
Q ss_pred hhcCCHHHHHHHHhhccC--CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHH
Q 006672 342 AKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419 (636)
Q Consensus 342 ~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 419 (636)
...|++++|.+.|+...+ |+..........+...++.++|+..|++.... ..|+...+ .+ .....|+..++ +.
T Consensus 143 ~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~-~~--~~~~lg~~~~~-~~ 217 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGW-NI--VEFYLGKISEE-TL 217 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHH-HH--HHHHccCCCHH-HH
Confidence 777888888877777664 22111111112233466788888888665542 23332221 22 22234554443 34
Q ss_pred HHHhHhhcCCCC-----ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCC
Q 006672 420 FDSMRFDYFIEP-----SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH 470 (636)
Q Consensus 420 ~~~m~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~ 470 (636)
++.+.+.....| ..+.|..++..+.+.|++++|...|+++. +++|.|
T Consensus 218 ~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al----~~~~~~ 269 (296)
T PRK11189 218 MERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLAL----ANNVYN 269 (296)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH----HhCCch
Confidence 444443221111 24678888999999999999999988655 566643
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2e-06 Score=85.75 Aligned_cols=399 Identities=12% Similarity=0.063 Sum_probs=223.4
Q ss_pred HhhcCCChHHHHHHhccC---CCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCc-ccHHHHHHHHHccCChHH
Q 006672 72 SASLHKSIDYALSIFDHF---TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR-LTYPFVSKSVASLSLLSL 147 (636)
Q Consensus 72 ~~~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~ 147 (636)
.....|+++.|...|-.. .++|-+.|..-..+|+..|++++|+.--.+-++ +.|+. ..|+-.-.++.-.|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHH
Confidence 345577888888887533 356777777777788888888887776665555 45653 356666677777788888
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHH-HHHhhCCCCCCCCChhhHHH-----HHHHHHhcCChHHHHHH
Q 006672 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF-KVFDETPEKNKSESVLLWNV-----LINGCSKIGYLRKAVEL 221 (636)
Q Consensus 148 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~-----li~~~~~~g~~~~A~~~ 221 (636)
|...|..-++.. +.|...++-|.+++. .+.+. +.|. +...|.. +.+.+.....+..-++.
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~----~~~~~~~~~~---------~p~~~~~l~~~p~t~~~~~~~~~~~~l~~ 154 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAYL----EDYAADQLFT---------KPYFHEKLANLPLTNYSLSDPAYVKILEI 154 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhhh----HHHHhhhhcc---------CcHHHHHhhcChhhhhhhccHHHHHHHHH
Confidence 888877776653 445556666666661 11111 1110 1111111 11111111111111111
Q ss_pred HhhCCC------CChHHHHHHHHHH-------HhcCCHHHHHHHH--hhCCCC-----C----------hhhHHHHHHHH
Q 006672 222 FGMMPK------KNVASWVSLIDGF-------MRKGDLKKAGELF--EQMPEK-----G----------VVSWTAMINGF 271 (636)
Q Consensus 222 ~~~m~~------~~~~~~~~li~~~-------~~~g~~~~A~~~~--~~~~~~-----~----------~~~~~~li~~~ 271 (636)
+++-.. .|.....++.... ...|....+...- ..+.++ | ..-...+..+.
T Consensus 155 ~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaa 234 (539)
T KOG0548|consen 155 IQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAA 234 (539)
T ss_pred hhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHH
Confidence 111110 0111111110000 0000000000000 000000 0 12345566777
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCc------hhHHHHHhhHHhhcC
Q 006672 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK------GAIGTALVDMYAKCG 345 (636)
Q Consensus 272 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g 345 (636)
.+..+++.|++-+....+.. -+..-++....++...|........-...++.|...- ......+..+|.+.+
T Consensus 235 ykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~ 312 (539)
T KOG0548|consen 235 YKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKRE 312 (539)
T ss_pred HHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 77777888888777777653 2333344445556666766666655555554432110 111222445777788
Q ss_pred CHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHhH
Q 006672 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMR 424 (636)
Q Consensus 346 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 424 (636)
+.+.|...|.+...+... -....+....++++...+...- +.|... -...-...+.+.|++..|...|.+++
T Consensus 313 ~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI 385 (539)
T KOG0548|consen 313 DYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI 385 (539)
T ss_pred hHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 888888888876542111 1122233445666665555544 445432 22223566778899999999999888
Q ss_pred hhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 425 FDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 425 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
. . -+-|...|....-+|.+.|.+.+|++-.+ ..++++|+....|.-=+.++....+|++|.+.|++.++..
T Consensus 386 k-r-~P~Da~lYsNRAac~~kL~~~~~aL~Da~----~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 386 K-R-DPEDARLYSNRAACYLKLGEYPEALKDAK----KCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred h-c-CCchhHHHHHHHHHHHHHhhHHHHHHHHH----HHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5 2 25568889999999999999998887744 5667899888888888888888889999999998887754
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.8e-06 Score=86.58 Aligned_cols=361 Identities=14% Similarity=0.098 Sum_probs=214.1
Q ss_pred CChhHHHHHHH--HhhcCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHH-CC--------CCCCc
Q 006672 61 ASSRITTQLIS--SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR-LS--------VRPNR 129 (636)
Q Consensus 61 ~~~~~~~~li~--~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g--------~~p~~ 129 (636)
-|+.+-.++++ .|..-|++|.|.+-...+. +-..|..|.+.|.+..+.+-|.-.+-.|.. .| ..|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 46777777776 5778899999988777664 445699999999999888888777766643 11 1233
Q ss_pred ccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHH
Q 006672 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209 (636)
Q Consensus 130 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 209 (636)
.+=..+.-.....|.+++|+.++.+-.+.. .|=..|-..|.+++|.++-+.--. ..=..||.....-+
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DR---iHLr~Tyy~yA~~L 868 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDR---IHLRNTYYNYAKYL 868 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccc---eehhhhHHHHHHHH
Confidence 222223333457889999999999887753 344567788999999988764321 11234666667777
Q ss_pred HhcCChHHHHHHHhhCC-----------------------CCChHHHHHHHHHHHhcCCHHHHHHHHhhCCC--------
Q 006672 210 SKIGYLRKAVELFGMMP-----------------------KKNVASWVSLIDGFMRKGDLKKAGELFEQMPE-------- 258 (636)
Q Consensus 210 ~~~g~~~~A~~~~~~m~-----------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------- 258 (636)
-..++.+.|+++|++.. ..|...|.-....+-..|++|.|+.+|....+
T Consensus 869 ear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~ 948 (1416)
T KOG3617|consen 869 EARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIK 948 (1416)
T ss_pred HhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeE
Confidence 77889999999998876 23555565566666678888888888876542
Q ss_pred ----------------CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC------------
Q 006672 259 ----------------KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG------------ 310 (636)
Q Consensus 259 ----------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~------------ 310 (636)
.|......|...|-..|++.+|...|-+.+ +|...|+.|-..+
T Consensus 949 C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L~nlal~s 1019 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRLANLALMS 1019 (1416)
T ss_pred eeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHHHHHHhhc
Confidence 122334445566666666666666665543 2222232222111
Q ss_pred ---CcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC--------------CChhcHHHHHHHHH
Q 006672 311 ---ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--------------KDLLTWTAMIWGLA 373 (636)
Q Consensus 311 ---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------------~~~~~~~~li~~~~ 373 (636)
+.-.|.++|++. |. -...-+..|-|.|.+..|+++--+-.+ .|+...+.-..-+.
T Consensus 1020 ~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~ 1091 (1416)
T KOG3617|consen 1020 GGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFE 1091 (1416)
T ss_pred CchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 111222222221 10 011223456666666666554222111 24444555555566
Q ss_pred HcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC----hhHHHHHHHHHHhcCCc
Q 006672 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS----VKHHTVVVNLLSRVGQD 449 (636)
Q Consensus 374 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~~ 449 (636)
.+.++++|..++-..++ |...+..|...| +.--.++-+.|.-...-.|+ ......+.+.+.++|.+
T Consensus 1092 ~~~qyekAV~lL~~ar~---------~~~AlqlC~~~n-v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Y 1161 (1416)
T KOG3617|consen 1092 NNQQYEKAVNLLCLARE---------FSGALQLCKNRN-VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAY 1161 (1416)
T ss_pred hHHHHHHHHHHHHHHHH---------HHHHHHHHhcCC-CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccch
Confidence 67777777777665544 334444444333 22223333444322212233 34566778889999999
Q ss_pred hHHHHHHHHHHHHH
Q 006672 450 SQGYQNSQNSFTKL 463 (636)
Q Consensus 450 ~~A~~~~~~~~~~~ 463 (636)
..|-+-|.++.+++
T Consensus 1162 h~AtKKfTQAGdKl 1175 (1416)
T KOG3617|consen 1162 HAATKKFTQAGDKL 1175 (1416)
T ss_pred HHHHHHHhhhhhHH
Confidence 99988888666554
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.8e-06 Score=87.28 Aligned_cols=217 Identities=10% Similarity=0.154 Sum_probs=139.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCC-----------------C--CCCH-HHHH---------HHHHHHHhcCCcH
Q 006672 263 SWTAMINGFSQNGEAEKALAMFFQMLDAG-----------------V--RAND-FTVV---------SALSACAKVGALE 313 (636)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------------~--~p~~-~t~~---------~ll~~~~~~~~~~ 313 (636)
.-+.-+.++...+-+.+-++++++..-.+ + .|+. ..|. .+...+...+-++
T Consensus 986 ~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyE 1065 (1666)
T KOG0985|consen 986 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYE 1065 (1666)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHH
Confidence 34556677777777777777777763210 0 1111 1222 2344556677788
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCC
Q 006672 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393 (636)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 393 (636)
+|..+|... ..+....+.|++ .-++++.|.+.-++..+| ..|..+..+-.+.|...+|++-|-+.
T Consensus 1066 EAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika----- 1130 (1666)
T KOG0985|consen 1066 EAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA----- 1130 (1666)
T ss_pred HHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc-----
Confidence 888888754 344444455554 346777777777776654 45888888888888888888776543
Q ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHH--------HHHHHHhc
Q 006672 394 EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQ--------NSFTKLLQ 465 (636)
Q Consensus 394 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~ 465 (636)
-|+..|..++.++++.|.+++-.+++...++ ..-+|.++ +.|+-+|++.+++.|-++++. ...+++++
T Consensus 1131 -dDps~y~eVi~~a~~~~~~edLv~yL~MaRk-k~~E~~id--~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~ 1206 (1666)
T KOG0985|consen 1131 -DDPSNYLEVIDVASRTGKYEDLVKYLLMARK-KVREPYID--SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFE 1206 (1666)
T ss_pred -CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH-hhcCccch--HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhh
Confidence 2467788888888888888888888876664 44456555 567888888888888777765 11111111
Q ss_pred --------cCCCCchhHHHHHHHHHHcCChhHHHHHHHHHH
Q 006672 466 --------LKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQ 498 (636)
Q Consensus 466 --------l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 498 (636)
+--.+.+.|..|+..+...|++..|...-+++-
T Consensus 1207 ~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1207 EKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 111255677778888888888887766555443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.8e-07 Score=90.70 Aligned_cols=244 Identities=11% Similarity=0.064 Sum_probs=159.9
Q ss_pred HhcCCHHHHHHHHhhCCCC----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHH
Q 006672 241 MRKGDLKKAGELFEQMPEK----GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316 (636)
Q Consensus 241 ~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 316 (636)
.-.|++..++.-.+ .... +.....-+.++|...|+++.++ .+..... .|.......+...+....+-+.+.
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 34566666664433 1111 1334445667777788776554 3333333 566555555555444434444444
Q ss_pred HHHHHHHHcCCC-CchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCC
Q 006672 317 RVHNYISCNDFG-LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395 (636)
Q Consensus 317 ~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 395 (636)
.-+......... .+..+......+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+ ...
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~e 162 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDE 162 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSC
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCC
Confidence 444333322222 33444445556778899999999998876 5667777788999999999999999999987 544
Q ss_pred CHHHHHHHHHHHHh----cCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCc
Q 006672 396 DGTVFLAILTACWY----SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHP 471 (636)
Q Consensus 396 ~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~ 471 (636)
|. +...+..++.. ...+.+|..+|+++.. ...+++.+.+.+.-+....|++++|.++++++ ++.+|.++
T Consensus 163 D~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~a----l~~~~~~~ 235 (290)
T PF04733_consen 163 DS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEA----LEKDPNDP 235 (290)
T ss_dssp CH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHH----CCC-CCHH
T ss_pred cH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH----HHhccCCH
Confidence 53 44445544432 3368999999999975 34678889999999999999999999988754 57899999
Q ss_pred hhHHHHHHHHHHcCCh-hHHHHHHHHHHhC
Q 006672 472 SSYVLLSNIYAAEGRW-KDVARVRTLMQRR 500 (636)
Q Consensus 472 ~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~ 500 (636)
.+...++.+....|+. +.+.+.+.+++..
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 9999999999999988 6677888888763
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-05 Score=76.05 Aligned_cols=406 Identities=8% Similarity=0.019 Sum_probs=213.2
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHh
Q 006672 44 TKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT---PKNLHIFNVLIRGLAENSHFQSCISHFVFM 120 (636)
Q Consensus 44 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 120 (636)
...|..+++.-...+-.-...+--=+...|-..|++++|..++.-+. .++...|-.|.-.+--.|.+.+|..+-...
T Consensus 38 ytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 38 YTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred chhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC
Confidence 56666666655433321111111112334556788888888876543 233444544544444456677776664443
Q ss_pred HHCCCCCCcccH-HHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCCh
Q 006672 121 LRLSVRPNRLTY-PFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199 (636)
Q Consensus 121 ~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 199 (636)
. +.... ..++...-+.++-+.-...++.+... ..-.-+|..+..-.-.+.+|.+++.+.... .|+-
T Consensus 118 ~------k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey 184 (557)
T KOG3785|consen 118 P------KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEY 184 (557)
T ss_pred C------CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Chhh
Confidence 2 22222 23334444566666666666555432 122233444444455678888888877644 3444
Q ss_pred hhHHHHH-HHHHhcCChHHHHHHHhhCC--CCCh-HHHHHHHHHHHh--cCCHH----------------HHHHHHh---
Q 006672 200 LLWNVLI-NGCSKIGYLRKAVELFGMMP--KKNV-ASWVSLIDGFMR--KGDLK----------------KAGELFE--- 254 (636)
Q Consensus 200 ~~~~~li-~~~~~~g~~~~A~~~~~~m~--~~~~-~~~~~li~~~~~--~g~~~----------------~A~~~~~--- 254 (636)
...|.-+ -+|.+..-++-+.+++.-.. -||. ...|.......+ .|+.. .+..+.+
T Consensus 185 ~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNL 264 (557)
T KOG3785|consen 185 IALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNL 264 (557)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCe
Confidence 4455433 34566666665555544333 1332 222222221111 12111 1111111
Q ss_pred --------------hCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----hcCCcHHH
Q 006672 255 --------------QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA-----KVGALEAG 315 (636)
Q Consensus 255 --------------~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~-----~~~~~~~a 315 (636)
.+.+.=+.+--.|+--|.+.++..+|..+.+++.- ..|-......+..+.. ....+.-|
T Consensus 265 VvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiA 342 (557)
T KOG3785|consen 265 VVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIA 342 (557)
T ss_pred EEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHH
Confidence 11110012334566678888999999888766542 3444444444333321 12235567
Q ss_pred HHHHHHHHHcCCCCchhH-HHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHc
Q 006672 316 VRVHNYISCNDFGLKGAI-GTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391 (636)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 391 (636)
.+.|..+-+++..-|... -.++...+.-..++++..-.++.+.. .|-..--.+..+++..|++.+|.++|-+....
T Consensus 343 qqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~ 422 (557)
T KOG3785|consen 343 QQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP 422 (557)
T ss_pred HHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh
Confidence 777777666655444332 24555555566678888877777764 33333334677888888899998888777654
Q ss_pred CCCCCHHHHHHHH-HHHHhcCcHHHHHHHHHHhHhhcCCCCChhH-HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCC
Q 006672 392 GTEPDGTVFLAIL-TACWYSGQVKLALNFFDSMRFDYFIEPSVKH-HTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPK 469 (636)
Q Consensus 392 g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~ 469 (636)
.++ |..+|.+++ .+|.+.+.++.|++++-.+. .+.+... ...+..-+-+++.+=-|-+.|+.. -.++|
T Consensus 423 ~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~----t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~l----E~lDP- 492 (557)
T KOG3785|consen 423 EIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN----TPSERFSLLQLIANDCYKANEFYYAAKAFDEL----EILDP- 492 (557)
T ss_pred hhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC----CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHH----HccCC-
Confidence 343 455666555 56778888888888775543 1222222 233345566666665555555522 24555
Q ss_pred CchhH
Q 006672 470 HPSSY 474 (636)
Q Consensus 470 ~~~~~ 474 (636)
++..|
T Consensus 493 ~pEnW 497 (557)
T KOG3785|consen 493 TPENW 497 (557)
T ss_pred Ccccc
Confidence 55555
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.2e-05 Score=85.71 Aligned_cols=327 Identities=13% Similarity=0.042 Sum_probs=213.5
Q ss_pred HHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC----CC----C----hHHHHHHHHHH
Q 006672 173 MYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KK----N----VASWVSLIDGF 240 (636)
Q Consensus 173 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~----~----~~~~~~li~~~ 240 (636)
.....|+++.+...++.++......+..........+...|++++|..++.... .. + ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 344567778777777776432112233333444555677899999988887653 11 1 11222334556
Q ss_pred HhcCCHHHHHHHHhhCCC----CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHH
Q 006672 241 MRKGDLKKAGELFEQMPE----KG----VVSWTAMINGFSQNGEAEKALAMFFQMLDA----GV-RANDFTVVSALSACA 307 (636)
Q Consensus 241 ~~~g~~~~A~~~~~~~~~----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~p~~~t~~~ll~~~~ 307 (636)
...|++++|...+++... .+ ...++.+...+...|++++|...+.+.... |- .+...++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 789999999998887532 22 235566777788999999999999888752 21 111234455666778
Q ss_pred hcCCcHHHHHHHHHHHHc----CCC---CchhHHHHHhhHHhhcCCHHHHHHHHhhccC------C--ChhcHHHHHHHH
Q 006672 308 KVGALEAGVRVHNYISCN----DFG---LKGAIGTALVDMYAKCGNIEAASLVFGETKE------K--DLLTWTAMIWGL 372 (636)
Q Consensus 308 ~~~~~~~a~~~~~~~~~~----~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~--~~~~~~~li~~~ 372 (636)
..|+++.|...++..... +.. .....+..+...+...|++++|...+++... + ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 899999999998876642 221 1233455666777888999999988887643 1 123455566678
Q ss_pred HHcCChHHHHHHHHHHhHcCCC-CCHHHH-----HHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCCh----hHHHHHHHH
Q 006672 373 AIHGRYEQAIQYFKKMMYSGTE-PDGTVF-----LAILTACWYSGQVKLALNFFDSMRFDYFIEPSV----KHHTVVVNL 442 (636)
Q Consensus 373 ~~~g~~~~A~~~~~~m~~~g~~-p~~~t~-----~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~l~~~ 442 (636)
...|++++|...+++....... .....+ ...+..+...|+.+.|.+.+..... .. .... ..+..+..+
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~-~~-~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPK-PE-FANNHFLQGQWRNIARA 700 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCC-CC-CccchhHHHHHHHHHHH
Confidence 8899999999999888652111 111111 1112344558899999999877653 11 1111 123567778
Q ss_pred HHhcCCchHHHHHHHHHHHHHhccCC--CCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 443 LSRVGQDSQGYQNSQNSFTKLLQLKP--KHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~~~~~l~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
+...|+.++|...++++....-.... ....++..++.+|...|+.++|...+.+..+..
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 89999999999999988765433222 223567788999999999999999999998754
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.5e-06 Score=84.98 Aligned_cols=284 Identities=18% Similarity=0.184 Sum_probs=169.0
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHH
Q 006672 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKK 248 (636)
Q Consensus 169 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~ 248 (636)
+.|..|.+.|.+..|.+....=. .+..|......+..++.+..-+++|-.+|+++..++.. +..|.+-.-+.+
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~--~l~~de~il~~ia~alik~elydkagdlfeki~d~dka-----le~fkkgdaf~k 692 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDE--ELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKA-----LECFKKGDAFGK 692 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHH--HhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHH-----HHHHHcccHHHH
Confidence 44666777777666655432111 11345555556666666666666676676666543321 111111111222
Q ss_pred HHHHHhhCCCCChh---------------------------hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 006672 249 AGELFEQMPEKGVV---------------------------SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS 301 (636)
Q Consensus 249 A~~~~~~~~~~~~~---------------------------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 301 (636)
|.++-+-.-...++ ..-.-|.+......|.+|+.+++.+++... -.--|..
T Consensus 693 aielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~ 770 (1636)
T KOG3616|consen 693 AIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGE 770 (1636)
T ss_pred HHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchH
Confidence 22221110000000 011123344556677888888877776532 2234667
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCC--ChhcHHHHHHHHHHcCChH
Q 006672 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK--DLLTWTAMIWGLAIHGRYE 379 (636)
Q Consensus 302 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~ 379 (636)
+...|+..|+++.|.++|-+. ..++--|+||.+.|++++|.++-.+...| .++.|-+-..-+-.+|++.
T Consensus 771 iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~ 841 (1636)
T KOG3616|consen 771 IADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFA 841 (1636)
T ss_pred HHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchh
Confidence 778888899999888888543 24566788999999999999988877665 3456666666677889998
Q ss_pred HHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHH
Q 006672 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNS 459 (636)
Q Consensus 380 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 459 (636)
+|.++|-... .|+. .+..|-+.|..+..+++.++-- -..-.++...+..-|-..|++.+|++-|-++
T Consensus 842 eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h----~d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 842 EAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHH----GDHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred hhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhC----hhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 8888876553 2542 3566778888888887776432 1122345556667777788888888776533
Q ss_pred HHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHH
Q 006672 460 FTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRT 495 (636)
Q Consensus 460 ~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (636)
.-|-.-.++|..++.|++|.++-+
T Consensus 909 ------------~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 909 ------------GDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred ------------hhHHHHHHHhhhhhhHHHHHHHHh
Confidence 234455666777777777766543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.3e-06 Score=84.10 Aligned_cols=200 Identities=9% Similarity=0.010 Sum_probs=108.4
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCC-----Ch--hcHHHHHHHHH
Q 006672 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK-----DL--LTWTAMIWGLA 373 (636)
Q Consensus 301 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~li~~~~ 373 (636)
.+...+...|++++|...++...+.. +.+...+..+...|...|++++|...+++..+. +. ..|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 33344555566666666666665544 344555566666666666666666666655431 11 13445666677
Q ss_pred HcCChHHHHHHHHHHhHcCC-CCCHHHH-H--HHHHHHHhcCcHHHHHHH--HHHhHhhcCC-CCChhHHHHHHHHHHhc
Q 006672 374 IHGRYEQAIQYFKKMMYSGT-EPDGTVF-L--AILTACWYSGQVKLALNF--FDSMRFDYFI-EPSVKHHTVVVNLLSRV 446 (636)
Q Consensus 374 ~~g~~~~A~~~~~~m~~~g~-~p~~~t~-~--~ll~a~~~~g~~~~a~~~--~~~m~~~~~~-~p~~~~~~~l~~~~~~~ 446 (636)
..|++++|+.++++...... .+..... + .++.-+...|..+.+.+. .......... ..........+.++...
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 77777777777777654221 1111111 1 222222333332222222 1111100000 11112223566677788
Q ss_pred CCchHHHHHHHHHHHHHhcc-----CCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 447 GQDSQGYQNSQNSFTKLLQL-----KPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 447 g~~~~A~~~~~~~~~~~~~l-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
|+.++|..+++......... .+.........+.++...|++++|.+.+......+
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 88888888888665544331 11234556677788889999999999999887754
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.5e-06 Score=77.32 Aligned_cols=302 Identities=12% Similarity=0.126 Sum_probs=188.0
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHH---HHHHHhcCChHHHHHHHhhCCCCChHHHHHH---HHHHHh
Q 006672 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL---INGCSKIGYLRKAVELFGMMPKKNVASWVSL---IDGFMR 242 (636)
Q Consensus 169 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l---i~~~~~ 242 (636)
-|-..+...|++.+|+.-|.... ..|...|.++ ...|...|+-..|+.=+.+..+..+..+.+- ...+.+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAv----e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAV----EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHH----cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh
Confidence 34455666777777777777776 3444444443 3456667776666666666554333333322 234566
Q ss_pred cCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 006672 243 KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322 (636)
Q Consensus 243 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 322 (636)
.|.++.|..=|+.+.+.+.. +|...+|.+-+.... ........+..+...|+...+++....+
T Consensus 119 ~Gele~A~~DF~~vl~~~~s-----------~~~~~eaqskl~~~~------e~~~l~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPS-----------NGLVLEAQSKLALIQ------EHWVLVQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred cccHHHHHHHHHHHHhcCCC-----------cchhHHHHHHHHhHH------HHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 77777777666665543321 011111111100000 0011223344455667888888888887
Q ss_pred HHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhcc---CCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHH-
Q 006672 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK---EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT- 398 (636)
Q Consensus 323 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~- 398 (636)
++.. +.|...+..-..+|...|.+..|..-++... ..+....--+-..+.+.|+.+.++...++-++ +.||..
T Consensus 182 lEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~ 258 (504)
T KOG0624|consen 182 LEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKL 258 (504)
T ss_pred HhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhh
Confidence 7664 6788888888888888888888876555443 35566666677777788888888888888887 777753
Q ss_pred HH---HHH---H------HHHHhcCcHHHHHHHHHHhHhhcCCCCC-----hhHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 006672 399 VF---LAI---L------TACWYSGQVKLALNFFDSMRFDYFIEPS-----VKHHTVVVNLLSRVGQDSQGYQNSQNSFT 461 (636)
Q Consensus 399 t~---~~l---l------~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 461 (636)
.| ..+ . ......+++.++.+-.+...+ ..|. ...+..+-.++...|++-+|++...+
T Consensus 259 Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~e--- 332 (504)
T KOG0624|consen 259 CFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKE--- 332 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeeecccccCCHHHHHHHHHH---
Confidence 21 111 1 122345667777777776654 2333 22334455677778888888887664
Q ss_pred HHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 462 KLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 462 ~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
.++++|+|..++.--+.+|.-...|++|+.-|+...+.+
T Consensus 333 -vL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 333 -VLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred -HHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 457889889899888999999999999999999888754
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.6e-06 Score=82.96 Aligned_cols=69 Identities=12% Similarity=0.139 Sum_probs=56.0
Q ss_pred CCChhH--HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 006672 430 EPSVKH--HTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502 (636)
Q Consensus 430 ~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 502 (636)
+|+... +-.++.-+-+.|+++.|.+.++.+.+ -.|.-+..|.+-+.++..+|..++|..++++.++.+.
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AId----HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID----HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc----cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 445443 45677788899999999999997664 3676677788888999999999999999999988664
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.8e-06 Score=88.53 Aligned_cols=127 Identities=16% Similarity=0.113 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCC---ChhcHHHHHHHHHH
Q 006672 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK---DLLTWTAMIWGLAI 374 (636)
Q Consensus 298 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~ 374 (636)
++.-+...|...|+++.|.+..+..++.. |..+..|..-...|-+.|++.+|.+.++....- |-..-+-.+..+.+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 44455566777788888888888777664 445677777777888888888888877776653 33344455666677
Q ss_pred cCChHHHHHHHHHHhHcCCCCCHH------HH--HHHHHHHHhcCcHHHHHHHHHHhHh
Q 006672 375 HGRYEQAIQYFKKMMYSGTEPDGT------VF--LAILTACWYSGQVKLALNFFDSMRF 425 (636)
Q Consensus 375 ~g~~~~A~~~~~~m~~~g~~p~~~------t~--~~ll~a~~~~g~~~~a~~~~~~m~~ 425 (636)
.|+.++|.+++....+.+..|-.. .| .-...+|.+.|++..|++.|..+.+
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 788888888777776655433221 11 2334567777777777776665543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.2e-05 Score=81.98 Aligned_cols=203 Identities=12% Similarity=0.050 Sum_probs=115.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCC-CCch--hHHHHHhh
Q 006672 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF-GLKG--AIGTALVD 339 (636)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~li~ 339 (636)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+....+... .++. ..+..+..
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 33445556677777777777777777653 33445556666677777777777777777665421 1222 23445677
Q ss_pred HHhhcCCHHHHHHHHhhccCCCh--hcHH------HHHHHHHHcCChHHHHHHHHHHhHc--CCCCC---HHHHHHHHHH
Q 006672 340 MYAKCGNIEAASLVFGETKEKDL--LTWT------AMIWGLAIHGRYEQAIQYFKKMMYS--GTEPD---GTVFLAILTA 406 (636)
Q Consensus 340 ~~~~~g~~~~A~~~~~~~~~~~~--~~~~------~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~t~~~ll~a 406 (636)
.+...|+.++|..++++....+. ..+. .++.-+...|....+.+. +.+... ...|+ .........+
T Consensus 195 ~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~ 273 (355)
T cd05804 195 FYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALA 273 (355)
T ss_pred HHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHH
Confidence 77788888888888877653211 1111 122222333432222222 111110 01011 1222245567
Q ss_pred HHhcCcHHHHHHHHHHhHhhcCC-------CCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC
Q 006672 407 CWYSGQVKLALNFFDSMRFDYFI-------EPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLK 467 (636)
Q Consensus 407 ~~~~g~~~~a~~~~~~m~~~~~~-------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~ 467 (636)
+...|+.++|..+++.+.....- ...+.......-++.+.|+.++|.+.+.++....-.+.
T Consensus 274 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~g 341 (355)
T cd05804 274 LAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIG 341 (355)
T ss_pred HhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 77889999999999888642111 01233334455567789999999999997776654443
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.5e-07 Score=85.98 Aligned_cols=214 Identities=16% Similarity=0.119 Sum_probs=115.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC-C----CChHHHHHHHHHHH
Q 006672 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP-K----KNVASWVSLIDGFM 241 (636)
Q Consensus 167 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~----~~~~~~~~li~~~~ 241 (636)
..-+.++|...|+.+.+. .++.... .|.......+...+...++-+.++.-+++.. . .+..+......++.
T Consensus 38 ~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~ 113 (290)
T PF04733_consen 38 DFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILF 113 (290)
T ss_dssp HHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 334556666667665443 3333332 5555555444443333344555555554433 1 12223333335566
Q ss_pred hcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCcHHHHH
Q 006672 242 RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK----VGALEAGVR 317 (636)
Q Consensus 242 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~ 317 (636)
..|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.+ +..+...+..++.. ...+..|.-
T Consensus 114 ~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y 188 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGGEKYQDAFY 188 (290)
T ss_dssp CCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred HcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHH
Confidence 678888888777665 345566667788888888888888888887642 33444455554432 235677777
Q ss_pred HHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCCh-HHHHHHHHHHhH
Q 006672 318 VHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRY-EQAIQYFKKMMY 390 (636)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~ 390 (636)
+|+++.+. +++++.+.+.+..++...|++++|.+++.+... .+..+...++......|+. +.+.+++.++..
T Consensus 189 ~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 189 IFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 77776543 355666666666666666666666666655443 2333444444444445554 445555555554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.5e-05 Score=90.39 Aligned_cols=323 Identities=11% Similarity=0.009 Sum_probs=172.5
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC----C--CCCCh--hhHHHHHHHHHhc
Q 006672 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK----N--KSESV--LLWNVLINGCSKI 212 (636)
Q Consensus 141 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~--~~~~~--~~~~~li~~~~~~ 212 (636)
..|++..+...+..+-......++.........+...|++++|...++..... + ..+.. .....+...+...
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 44555555555444311111122222333444455666777766666543211 0 01111 1112223344567
Q ss_pred CChHHHHHHHhhCCC----CCh----HHHHHHHHHHHhcCCHHHHHHHHhhCCC-------CC--hhhHHHHHHHHHhCC
Q 006672 213 GYLRKAVELFGMMPK----KNV----ASWVSLIDGFMRKGDLKKAGELFEQMPE-------KG--VVSWTAMINGFSQNG 275 (636)
Q Consensus 213 g~~~~A~~~~~~m~~----~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~--~~~~~~li~~~~~~g 275 (636)
|++++|...+++... .+. ...+.+...+...|++++|...+++... +. ..++..+...+...|
T Consensus 466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G 545 (903)
T PRK04841 466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG 545 (903)
T ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence 777777776665432 111 2334455556667777777777666542 11 234455566677778
Q ss_pred ChHHHHHHHHHHHH----CCCC--C-CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHc----CCCCchhHHHHHhhHHhhc
Q 006672 276 EAEKALAMFFQMLD----AGVR--A-NDFTVVSALSACAKVGALEAGVRVHNYISCN----DFGLKGAIGTALVDMYAKC 344 (636)
Q Consensus 276 ~~~~A~~l~~~m~~----~g~~--p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~ 344 (636)
++++|...+++... .+.. | ....+..+...+...|++++|...+...... +.......+..+...+...
T Consensus 546 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 625 (903)
T PRK04841 546 FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLAR 625 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHc
Confidence 88888777776654 2211 1 1223334444556668888887777765542 1111233344456667777
Q ss_pred CCHHHHHHHHhhccC----C-ChhcHH-----HHHHHHHHcCChHHHHHHHHHHhHcCCCCCHH---HHHHHHHHHHhcC
Q 006672 345 GNIEAASLVFGETKE----K-DLLTWT-----AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT---VFLAILTACWYSG 411 (636)
Q Consensus 345 g~~~~A~~~~~~~~~----~-~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g 411 (636)
|+.+.|.+.+++... . ....+. ..+..+...|+.+.|..++............. .+..+..++...|
T Consensus 626 G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 705 (903)
T PRK04841 626 GDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLG 705 (903)
T ss_pred CCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcC
Confidence 888888777766532 1 111111 11233455677888887776654421111111 1344556677788
Q ss_pred cHHHHHHHHHHhHhh---cCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 006672 412 QVKLALNFFDSMRFD---YFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKL 463 (636)
Q Consensus 412 ~~~~a~~~~~~m~~~---~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 463 (636)
+.++|...+++.... .+..++ ......+..+|.+.|+.++|.+.+.++.+..
T Consensus 706 ~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 706 QFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 888888888776532 232222 3456677778888888888888888776543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.2e-06 Score=86.49 Aligned_cols=446 Identities=13% Similarity=0.052 Sum_probs=221.2
Q ss_pred HHHHHHHHHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHhH
Q 006672 46 QLRQIHAQIILHNLFAS-SRITTQLISSASLHKSIDYALSIFDHFT---PKNLHIFNVLIRGLAENSHFQSCISHFVFML 121 (636)
Q Consensus 46 ~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 121 (636)
.+..++..+....++++ ..+|..|-..|...-+...|.+.|+... ..+..++-.....|++..+++.|..+.-.--
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 33444444444344333 2467777777777777778888887554 4466678888888888888888887732222
Q ss_pred HCCC-CCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChh
Q 006672 122 RLSV-RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200 (636)
Q Consensus 122 ~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 200 (636)
+... ..-...|...--.+...++...+..-|+...+.. +.|...|..|..+|.++|++..|.++|.+..... +.+..
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-P~s~y 631 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-PLSKY 631 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-cHhHH
Confidence 2110 0011122222223456667777777777777653 4466678888888888888888888887766332 22222
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCC---CC-------hHHHHHHHHHHHhcCCHHHHHHHHhhC-------CC----C
Q 006672 201 LWNVLINGCSKIGYLRKAVELFGMMPK---KN-------VASWVSLIDGFMRKGDLKKAGELFEQM-------PE----K 259 (636)
Q Consensus 201 ~~~~li~~~~~~g~~~~A~~~~~~m~~---~~-------~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~----~ 259 (636)
.--.....-+..|.+.+|+..+..... .- ..++-.+...+.-.|-...|...|+.- .. .
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~ 711 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQS 711 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 222233345667888888877766541 01 111111111122222222222222221 11 1
Q ss_pred ChhhHHHHHHHHHhCCChH------HHHHH-HHHHHHCCCCCC--------------------HHHHHHHHHHHHh----
Q 006672 260 GVVSWTAMINGFSQNGEAE------KALAM-FFQMLDAGVRAN--------------------DFTVVSALSACAK---- 308 (636)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~------~A~~l-~~~m~~~g~~p~--------------------~~t~~~ll~~~~~---- 308 (636)
+...|-.+.++|.---..+ -.+.+ +.+....+..|+ ..++..+...+.+
T Consensus 712 ~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~ 791 (1238)
T KOG1127|consen 712 DRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLL 791 (1238)
T ss_pred hHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHH
Confidence 1222322222211100000 00000 011111111111 1122222221111
Q ss_pred cC----CcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhcc---CCChhcHHHHHHHHHHcCChHHH
Q 006672 309 VG----ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK---EKDLLTWTAMIWGLAIHGRYEQA 381 (636)
Q Consensus 309 ~~----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 381 (636)
.+ +...|...+...++.. ..+...|++|.-. ..-|++.-|.-.|-... +....+|..+...+.+..+++-|
T Consensus 792 l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A 869 (1238)
T KOG1127|consen 792 LGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHA 869 (1238)
T ss_pred cCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHh
Confidence 00 1112222222222221 2233333433333 33344444444443322 13445566666666666677777
Q ss_pred HHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHh---hcCCCCChhHHHHHHHHHHhcCCchHHHHHHH
Q 006672 382 IQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRF---DYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQ 457 (636)
Q Consensus 382 ~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~---~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (636)
...|...+. +.|+ ...|......-...|+.-+...+|..-.. ..|-.|+..-|-|....-...|+.++-+.-.+
T Consensus 870 ~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ 947 (1238)
T KOG1127|consen 870 EPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTAR 947 (1238)
T ss_pred hHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhh
Confidence 777776665 5554 34454444444456666666666654211 12333444444444444445555544433333
Q ss_pred ------HHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHH
Q 006672 458 ------NSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLM 497 (636)
Q Consensus 458 ------~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 497 (636)
-+.++.+.-.|++..+|...+...-..+.+++|.+...+.
T Consensus 948 ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 948 KISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred hhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4556777788999999999999999999999888777664
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.00035 Score=70.10 Aligned_cols=423 Identities=13% Similarity=0.101 Sum_probs=234.3
Q ss_pred CCChhHHHHHHHHhhcCCChHHHHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHH
Q 006672 60 FASSRITTQLISSASLHKSIDYALSIFDHFT---PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136 (636)
Q Consensus 60 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 136 (636)
+-|...|+.||.-+... ..++++..++++. +-....|..-|.+-....+++....+|.+.+..- .+...|..-|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHH
Confidence 44778888888876665 8888888888776 3356678888888888888888888888887643 3455555555
Q ss_pred HHHHc-cCChHH----HHHHHHHH-HHhCCCCCh-hHHHHHHHH---------HHhcCChHHHHHHHhhCCCCCCCCChh
Q 006672 137 KSVAS-LSLLSL----GRGLHCLI-VKSGVEYDA-FVRVHLADM---------YVQLGKTRGAFKVFDETPEKNKSESVL 200 (636)
Q Consensus 137 ~~~~~-~~~~~~----a~~~~~~~-~~~g~~~~~-~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~~~~~~~~ 200 (636)
..-.+ .+.... ..+.|+.. .+.|.++-. ..|+..+.. |....+++..+++++++..-.+.-=..
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 44332 222222 22333333 234543332 234444433 334456777788888776432111112
Q ss_pred hHHHH------HHHH-------HhcCChHHHHHHHhhCC--------------CC-------ChHHHHHHHHHHHhcC--
Q 006672 201 LWNVL------INGC-------SKIGYLRKAVELFGMMP--------------KK-------NVASWVSLIDGFMRKG-- 244 (636)
Q Consensus 201 ~~~~l------i~~~-------~~~g~~~~A~~~~~~m~--------------~~-------~~~~~~~li~~~~~~g-- 244 (636)
.|+-. |+.. -+...+..|.+++++.. ++ .+..|-.+|.-=...+
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 23221 1111 11233455555555543 00 0112333333211111
Q ss_pred ----CHH--HHHHHHhhCC---CCChhhHHH-------HHHHHHhCCC-------hHHHHHHHHHHHHCCCCCCHHHHHH
Q 006672 245 ----DLK--KAGELFEQMP---EKGVVSWTA-------MINGFSQNGE-------AEKALAMFFQMLDAGVRANDFTVVS 301 (636)
Q Consensus 245 ----~~~--~A~~~~~~~~---~~~~~~~~~-------li~~~~~~g~-------~~~A~~l~~~m~~~g~~p~~~t~~~ 301 (636)
.+- ...-++++.. --....|-- .-+.+...|+ .+++..++++....-..-+..+|..
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0000111100 000111111 1112333333 4566777776665433335555544
Q ss_pred HHHHHHhc---CCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC-----CChhcHHHHHHHHH
Q 006672 302 ALSACAKV---GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-----KDLLTWTAMIWGLA 373 (636)
Q Consensus 302 ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~ 373 (636)
+...--.. ...+....+++.+++.....-.-+|..++..-.+..-+..|+.+|.+..+ .++...++++.-|+
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c 413 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC 413 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh
Confidence 43322111 13566667777776643333345677788888888888999999988875 26667788887766
Q ss_pred HcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC--hhHHHHHHHHHHhcCCch
Q 006672 374 IHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS--VKHHTVVVNLLSRVGQDS 450 (636)
Q Consensus 374 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~ 450 (636)
.++.+-|.++|+--.+ ..+| +.-....+.-+++.++-..++.+|++.... ++.|+ .+.|..+++-=..-|++.
T Consensus 414 -skD~~~AfrIFeLGLk--kf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-~l~~~ks~~Iw~r~l~yES~vGdL~ 489 (656)
T KOG1914|consen 414 -SKDKETAFRIFELGLK--KFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-VLSADKSKEIWDRMLEYESNVGDLN 489 (656)
T ss_pred -cCChhHHHHHHHHHHH--hcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-cCChhhhHHHHHHHHHHHHhcccHH
Confidence 4677888888887665 3344 334445667777888888899999988863 56655 678999999888899999
Q ss_pred HHHHHHHHHHHHHhc-cCCCCchhHHHHHHHHHHcCChhHH
Q 006672 451 QGYQNSQNSFTKLLQ-LKPKHPSSYVLLSNIYAAEGRWKDV 490 (636)
Q Consensus 451 ~A~~~~~~~~~~~~~-l~p~~~~~~~~l~~~~~~~g~~~~A 490 (636)
.+.++-++.....-+ .+|+- ..-..+.+-|.-.+.+..-
T Consensus 490 si~~lekR~~~af~~~qe~~~-~~~~~~v~RY~~~d~~~c~ 529 (656)
T KOG1914|consen 490 SILKLEKRRFTAFPADQEYEG-NETALFVDRYGILDLYPCS 529 (656)
T ss_pred HHHHHHHHHHHhcchhhcCCC-ChHHHHHHHHhhccccccc
Confidence 888888866543221 22211 1122344555555554433
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.00036 Score=74.79 Aligned_cols=270 Identities=19% Similarity=0.176 Sum_probs=156.8
Q ss_pred HHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 006672 173 MYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGEL 252 (636)
Q Consensus 173 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~ 252 (636)
.....+-+++|..+|+..- .+..+.+.||. .-+..+.|.++-++..+ +.+|+.+..+-.+.|.+.+|.+-
T Consensus 1057 iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieS 1126 (1666)
T KOG0985|consen 1057 IAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIES 1126 (1666)
T ss_pred HHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHH
Confidence 3444555666666665542 23333444433 23445555555544433 34566666666666666666665
Q ss_pred HhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchh
Q 006672 253 FEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332 (636)
Q Consensus 253 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 332 (636)
|-+. .|...|..++....+.|.+++-...+....+..-.|...+ .++-+|++.+++.+-.++.. .|+..
T Consensus 1127 yika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi~-------gpN~A 1195 (1666)
T KOG0985|consen 1127 YIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFIA-------GPNVA 1195 (1666)
T ss_pred HHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHhc-------CCCch
Confidence 5332 3345566666666666666666666655555444444332 45556666666554443331 34555
Q ss_pred HHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCc
Q 006672 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412 (636)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 412 (636)
-...+.+-+...|.++.|.-+|. ++.-|..|...+...|++..|...-++. .+..||..+-.||...+.
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~-----~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~E 1264 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYS-----NVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEE 1264 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhh
Confidence 55555566666666666655554 3456777777888888888877665543 235688888888877766
Q ss_pred HHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHc
Q 006672 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAE 484 (636)
Q Consensus 413 ~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~ 484 (636)
+.-|. |- -..+....+-..-++..|...|-++|-+.+++ .++.++..+.+.|.-|+-.|++-
T Consensus 1265 FrlAQ-----iC-GL~iivhadeLeeli~~Yq~rGyFeElIsl~E----a~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1265 FRLAQ-----IC-GLNIIVHADELEELIEYYQDRGYFEELISLLE----AGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred hhHHH-----hc-CceEEEehHhHHHHHHHHHhcCcHHHHHHHHH----hhhchhHHHHHHHHHHHHHHHhc
Confidence 55442 21 12233345556678888888888888888777 33455555666777776666654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.9e-06 Score=76.82 Aligned_cols=147 Identities=11% Similarity=0.119 Sum_probs=112.7
Q ss_pred hhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHH
Q 006672 338 VDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLA 416 (636)
Q Consensus 338 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 416 (636)
+-.|.+.|+++.+....+.+..+. . .|...++.++++..+++..+ ..|+ ...|..+...|...|++++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 345777777776655443332221 0 11225667888888888887 4555 66888888999999999999
Q ss_pred HHHHHHhHhhcCCCC-ChhHHHHHHHHH-HhcCC--chHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHH
Q 006672 417 LNFFDSMRFDYFIEP-SVKHHTVVVNLL-SRVGQ--DSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVAR 492 (636)
Q Consensus 417 ~~~~~~m~~~~~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~ 492 (636)
...|++..+ +.| +...+..+..++ .+.|+ .++|.++++++. +.+|+++.++..++..+.+.|++++|..
T Consensus 93 ~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al----~~dP~~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 93 LLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKAL----ALDANEVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH----HhCCCChhHHHHHHHHHHHcCCHHHHHH
Confidence 999999875 445 578888888864 67787 599999988554 7799999999999999999999999999
Q ss_pred HHHHHHhCC
Q 006672 493 VRTLMQRRS 501 (636)
Q Consensus 493 ~~~~m~~~g 501 (636)
.|+++.+..
T Consensus 166 ~~~~aL~l~ 174 (198)
T PRK10370 166 LWQKVLDLN 174 (198)
T ss_pred HHHHHHhhC
Confidence 999998854
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=2e-06 Score=74.49 Aligned_cols=122 Identities=14% Similarity=0.091 Sum_probs=81.1
Q ss_pred HHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC
Q 006672 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431 (636)
Q Consensus 353 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 431 (636)
+|++..+-++..+..+...+.+.|++++|+..|++... ..|+ ...+..+..++...|++++|...|++..+ --+.
T Consensus 15 ~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~--l~p~ 90 (144)
T PRK15359 15 ILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM--LDAS 90 (144)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCC
Confidence 34444433343455566667777777778777777776 5554 45667777777777888888888777764 1233
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 006672 432 SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYA 482 (636)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~ 482 (636)
++..+..++.++.+.|++++|.+.++++. ++.|+++..|...+.+..
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al----~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAI----KMSYADASWSEIRQNAQI 137 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCCCChHHHHHHHHHHH
Confidence 56777777777777788888877777443 567777777766665543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.1e-06 Score=79.79 Aligned_cols=182 Identities=9% Similarity=0.053 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCc---hhHHHHHhhHHhhcCCHHHHHHHHhhccC--CC-hh---cHH
Q 006672 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK---GAIGTALVDMYAKCGNIEAASLVFGETKE--KD-LL---TWT 366 (636)
Q Consensus 296 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~---~~~ 366 (636)
...+......+...|+++.|...++.+.+.. +.+ ...+..+...|.+.|++++|...++++.+ |+ .. ++.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 3445555555666666666666666665433 111 13445555566666666666666665543 11 11 233
Q ss_pred HHHHHHHHc--------CChHHHHHHHHHHhHcCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHH
Q 006672 367 AMIWGLAIH--------GRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHT 437 (636)
Q Consensus 367 ~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 437 (636)
.+..++.+. |+.++|++.|+++.+ ..|+.. ....+... +... ... .....
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~----~~~~------~~~---------~~~~~ 170 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRM----DYLR------NRL---------AGKEL 170 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHH----HHHH------HHH---------HHHHH
Confidence 334444333 455556666665555 333322 11111100 0000 000 01123
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 438 VVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 438 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
.+.+.|.+.|++++|...++++.+. ..-.|..+..+..++.+|...|++++|..+++.+..+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVEN-YPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHH-CCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5677889999999999999977644 1113445678999999999999999999999988764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.2e-07 Score=58.56 Aligned_cols=32 Identities=38% Similarity=0.579 Sum_probs=15.1
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhhC
Q 006672 159 GVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190 (636)
Q Consensus 159 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 190 (636)
|+.||..+||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.2e-07 Score=58.48 Aligned_cols=34 Identities=35% Similarity=0.564 Sum_probs=29.4
Q ss_pred CCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC
Q 006672 193 KNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226 (636)
Q Consensus 193 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 226 (636)
+|++||..|||+||.+|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678999999999999999999999999998884
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.7e-06 Score=72.09 Aligned_cols=109 Identities=15% Similarity=0.154 Sum_probs=93.6
Q ss_pred HHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHH
Q 006672 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSF 460 (636)
Q Consensus 382 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (636)
..+|++..+ +.|+. +.....++...|++++|...|+.... +.| +...|..++.++.+.|++++|...|+++.
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 456777776 56664 45567788899999999999999885 344 68899999999999999999999999655
Q ss_pred HHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 461 TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 461 ~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
+++|.++..+..++.++...|++++|...+++..+..
T Consensus 86 ----~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 86 ----MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred ----hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7899999999999999999999999999999998854
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00021 Score=74.79 Aligned_cols=237 Identities=12% Similarity=0.129 Sum_probs=157.7
Q ss_pred CCCcchHHHHHH--HHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhC---------
Q 006672 91 PKNLHIFNVLIR--GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG--------- 159 (636)
Q Consensus 91 ~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--------- 159 (636)
.-|..+-.+|+. -|..-|+.+.|.+-.+... +...|..+.+.|.+.++++-|+-.+..|....
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~ 796 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ 796 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH
Confidence 446677777774 4667899999988777654 34568889999999888888887777665321
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCC-hHHHHHHHH
Q 006672 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN-VASWVSLID 238 (636)
Q Consensus 160 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~li~ 238 (636)
-.++ ..-.-..-.....|.+++|+.+|.+-. -|..|=..|-..|.|++|.++-+.-.... ..||.....
T Consensus 797 q~~~-e~eakvAvLAieLgMlEeA~~lYr~ck---------R~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~ 866 (1416)
T KOG3617|consen 797 QNGE-EDEAKVAVLAIELGMLEEALILYRQCK---------RYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAK 866 (1416)
T ss_pred hCCc-chhhHHHHHHHHHhhHHHHHHHHHHHH---------HHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHH
Confidence 1221 222223333457799999999998876 24455567778999999999876543222 236666666
Q ss_pred HHHhcCCHHHHHHHHhhCCCC-----------------------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 006672 239 GFMRKGDLKKAGELFEQMPEK-----------------------GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295 (636)
Q Consensus 239 ~~~~~g~~~~A~~~~~~~~~~-----------------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 295 (636)
-+-..++.+.|++.|++...+ |...|.-...-+-..|+.+.|+.+|....+
T Consensus 867 ~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------ 940 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------ 940 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh------
Confidence 677788899999888876432 222343344444556667777766665543
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhcc
Q 006672 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358 (636)
Q Consensus 296 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 358 (636)
|-++.+..+-.|+.++|.++-++ .-|....-.|..+|-..|++.+|...|.+..
T Consensus 941 ---~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 ---YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ---hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 33445555667777777776554 2355566678888888888888888887654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.2e-05 Score=81.11 Aligned_cols=213 Identities=12% Similarity=0.162 Sum_probs=102.2
Q ss_pred HHhcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHH
Q 006672 240 FMRKGDLKKAGELFEQMPEKG---VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316 (636)
Q Consensus 240 ~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 316 (636)
+.+.|++.+|.-.|+.....| ...|--|...-..+++-..|+.-+++..+.. +-|...+..|.-.|...|.-..|.
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence 456666777766666655433 4566666666666776666766666666542 224445555555566666555565
Q ss_pred HHHHHHHHcCCCCchhHHHHHh-------hHHhhcCCHHHHHHHHhhcc-----CCChhcHHHHHHHHHHcCChHHHHHH
Q 006672 317 RVHNYISCNDFGLKGAIGTALV-------DMYAKCGNIEAASLVFGETK-----EKDLLTWTAMIWGLAIHGRYEQAIQY 384 (636)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~li-------~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~ 384 (636)
..+..-++..++ -.....+-. ........+....++|-++. +.|......|.-.|...|.+++|+..
T Consensus 374 ~~L~~Wi~~~p~-y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 374 KMLDKWIRNKPK-YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHHhCcc-chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 555544332211 000000000 00011111222222332221 13444444555555555555555555
Q ss_pred HHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHH
Q 006672 385 FKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNS 459 (636)
Q Consensus 385 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 459 (636)
|+.++. ++|+ ..+|+.|...++...+.++|+..|++..+ +.|+ +.....|+-.|...|.++||.+.|-.+
T Consensus 453 f~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq---LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 453 FEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ---LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh---cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 555555 4444 23455555555555555555555555543 4444 334444444555555555555554433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.4e-05 Score=80.90 Aligned_cols=211 Identities=17% Similarity=0.111 Sum_probs=143.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006672 232 SWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311 (636)
Q Consensus 232 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 311 (636)
.-..+...+.+.|-...|..+|++. ..|...|..|...|+..+|..+..+-.+ -+||...|..+.....+..-
T Consensus 400 ~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHH
Confidence 3455667777888888888888774 5577777788888888888777777666 36777777777666666556
Q ss_pred cHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCC---ChhcHHHHHHHHHHcCChHHHHHHHHHH
Q 006672 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK---DLLTWTAMIWGLAIHGRYEQAIQYFKKM 388 (636)
Q Consensus 312 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m 388 (636)
+++|.++.++.... .-..+.......++++++.+.|+.-.+- -..+|-....+..+.++++.|.+.|..-
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 66777666654322 1122222233367777777777765542 3457777777777777777887777777
Q ss_pred hHcCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHH
Q 006672 389 MYSGTEPDG-TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSF 460 (636)
Q Consensus 389 ~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (636)
.. ..||. ..|+.+-.+|.+.|+-.+|...+++..+ ++ ..+...|.+.+-...+.|.+++|.+.+.++.
T Consensus 546 vt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 546 VT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred hh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 77 67774 4777777778888877788777777774 44 4455566666666777777888777777554
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.6e-05 Score=87.56 Aligned_cols=200 Identities=13% Similarity=0.112 Sum_probs=149.3
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHhhCCC--------CChHHHHHHHHHHHhcCCHHHHHHHHhhCCCC-C-hhhHH
Q 006672 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPK--------KNVASWVSLIDGFMRKGDLKKAGELFEQMPEK-G-VVSWT 265 (636)
Q Consensus 196 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~ 265 (636)
|-+...|-..|.-..+.++.++|.+++++... .-..+|.+++++-...|.-+...++|++..+- | ...|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 44556777777777788888888877777662 12347778887777778788888888887653 2 45677
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCC-CCchhHHHHHhhHHhhc
Q 006672 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF-GLKGAIGTALVDMYAKC 344 (636)
Q Consensus 266 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~ 344 (636)
.|...|.+.+.+++|.++|+.|.+. ..-....|...+..+.+..+-+.|..++.++++.-. .-......-.+++-.++
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 8888888888888888888888874 234556777778888888888888888888776421 12455566677777888
Q ss_pred CCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC
Q 006672 345 GNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396 (636)
Q Consensus 345 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 396 (636)
|+.+.++.+|+.... +-...|+..|..-.++|+.+.+..+|++....++.|-
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 888888888887764 3566888888888888888888888888888777765
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.1e-06 Score=82.60 Aligned_cols=223 Identities=13% Similarity=0.022 Sum_probs=171.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCH
Q 006672 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347 (636)
Q Consensus 268 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 347 (636)
..-+.++|+..+|.-.|+...... +-+...|.-|...-...++-..|+..+.+.++.. |.+..+..+|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 345678999999999999988764 4466788888888888888889999999998876 67888999999999999999
Q ss_pred HHHHHHHhhccCCC-hhcHHHHH---------HHHHHcCChHHHHHHHHHHh-HcCCCCCHHHHHHHHHHHHhcCcHHHH
Q 006672 348 EAASLVFGETKEKD-LLTWTAMI---------WGLAIHGRYEQAIQYFKKMM-YSGTEPDGTVFLAILTACWYSGQVKLA 416 (636)
Q Consensus 348 ~~A~~~~~~~~~~~-~~~~~~li---------~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a 416 (636)
.+|.+.++.-.... ...|.... ..+..........++|-++. ..+.++|+.....|.-.|--.|.+++|
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 99999987643210 00000000 11111122334455555554 445456777777777778889999999
Q ss_pred HHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHH
Q 006672 417 LNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRT 495 (636)
Q Consensus 417 ~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (636)
...|+.+.. ++|+ ...||-|+..++...+.+||+..|+++ +++.|.-..+...|+-.|...|.++||.+.|-
T Consensus 450 iDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rA----LqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 450 VDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRA----LQLQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHH----HhcCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 999999985 6675 778999999999999999999999855 58899999999999999999999999999988
Q ss_pred HHHh
Q 006672 496 LMQR 499 (636)
Q Consensus 496 ~m~~ 499 (636)
....
T Consensus 523 ~AL~ 526 (579)
T KOG1125|consen 523 EALS 526 (579)
T ss_pred HHHH
Confidence 7655
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.6e-05 Score=73.11 Aligned_cols=212 Identities=10% Similarity=0.075 Sum_probs=142.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC-CcHHHHHHHHHHHHcCCCCchhHHHHHhhH
Q 006672 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND-FTVVSALSACAKVG-ALEAGVRVHNYISCNDFGLKGAIGTALVDM 340 (636)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 340 (636)
++..+-..+...++.++|+.+..++++. .|+. ..+..--.++...+ +++++...++.+.+.. +.+..+|+...-+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 3444445566677888888888888874 3443 34444444445555 5678888888887665 4555566655555
Q ss_pred HhhcCCH--HHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhc---Cc
Q 006672 341 YAKCGNI--EAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS---GQ 412 (636)
Q Consensus 341 ~~~~g~~--~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~---g~ 412 (636)
+.+.|+. +++...++.+.+ +|..+|+...-++...|+++++++.++++++.+.. |...|+.....+.+. |.
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence 5555652 566777777664 57778998888888899999999999999985433 344565555555443 22
Q ss_pred ----HHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhc----CCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHc
Q 006672 413 ----VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV----GQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAE 484 (636)
Q Consensus 413 ----~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~ 484 (636)
.++...+...++. -.+-+...|+.+..+|... ++..+|.+++.++ +..+|+++.+...|+.+|...
T Consensus 195 ~~~~~e~el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~----~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 195 LEAMRDSELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEV----LSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred ccccHHHHHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHh----hcccCCcHHHHHHHHHHHHhh
Confidence 2466777766664 1234577888888888773 4456788777654 356888888999999999864
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.7e-06 Score=84.93 Aligned_cols=214 Identities=9% Similarity=0.064 Sum_probs=176.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhc
Q 006672 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344 (636)
Q Consensus 265 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 344 (636)
..+...+...|-...|+.+|++... +..++.+|...|+..+|..+.....+ -+|++..|..|.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccCh
Confidence 4567788899999999999988753 55678889999999999999888877 379999999999999888
Q ss_pred CCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHh
Q 006672 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSM 423 (636)
Q Consensus 345 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m 423 (636)
.-++.|.++++....+--..|+.. ....++++++.+.|+.-.+ +.|- ..+|..+..+..+.+++..|.+.|..-
T Consensus 471 s~yEkawElsn~~sarA~r~~~~~---~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 471 SLYEKAWELSNYISARAQRSLALL---ILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred HHHHHHHHHhhhhhHHHHHhhccc---cccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 889999999987765422222222 2347899999999999877 5554 458888888888999999999999988
Q ss_pred HhhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 424 RFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 424 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
.. ..|+ .+.|+++..+|.+.|+..+|...+.++. +-+-++...|...+-...+-|.|++|.+.+.++.+..
T Consensus 546 vt---L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAl----Kcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 546 VT---LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEAL----KCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred hh---cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHh----hcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 74 4565 7899999999999999999999998776 4456677888888888999999999999999987643
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00017 Score=77.33 Aligned_cols=443 Identities=11% Similarity=0.035 Sum_probs=242.2
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCCCCC---cchHHH--HHHHHHhCCCchHHHHHH
Q 006672 43 STKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN---LHIFNV--LIRGLAENSHFQSCISHF 117 (636)
Q Consensus 43 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~--li~~~~~~g~~~~A~~~~ 117 (636)
+...|.+.|....... ..+...+..+.+.|++..+++.|..+.-...+.+ ...||. ..-.|...++...|+.-|
T Consensus 507 Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~f 585 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEF 585 (1238)
T ss_pred HHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHH
Confidence 3556666666665543 2366778889999999999999988743222221 122222 222345566666666666
Q ss_pred HHhHHCCCCC-CcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC---
Q 006672 118 VFMLRLSVRP-NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK--- 193 (636)
Q Consensus 118 ~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 193 (636)
+...+. .| |...|..+..+|...|++..|..+|.++....+ .+.+..--..-+-+..|.+.+|...+..+...
T Consensus 586 QsALR~--dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP-~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~ 662 (1238)
T KOG1127|consen 586 QSALRT--DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRP-LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSL 662 (1238)
T ss_pred HHHhcC--CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCc-HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 666553 23 455666666777777777777777766655321 11111111222334456666666665544311
Q ss_pred ---CCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC-------------------------------CCChHHHHHHHHH
Q 006672 194 ---NKSESVLLWNVLINGCSKIGYLRKAVELFGMMP-------------------------------KKNVASWVSLIDG 239 (636)
Q Consensus 194 ---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------------------------------~~~~~~~~~li~~ 239 (636)
+...-..++-.+...+.-.|-..+|..+++... +|+.+. ..++..
T Consensus 663 e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn-~h~l~i 741 (1238)
T KOG1127|consen 663 ERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVN-MHYLII 741 (1238)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchH-HHHHHH
Confidence 001112223223333333333333333333322 122111 111111
Q ss_pred HHh----cCCH---H---HHHHHHhhCC--CCChhhHHHHHHHHHh--------CCChHHHHHHHHHHHHCCCCCCHHHH
Q 006672 240 FMR----KGDL---K---KAGELFEQMP--EKGVVSWTAMINGFSQ--------NGEAEKALAMFFQMLDAGVRANDFTV 299 (636)
Q Consensus 240 ~~~----~g~~---~---~A~~~~~~~~--~~~~~~~~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~~~t~ 299 (636)
+.+ .+.. | -+.+.+-.-. ..+..+|..++..|.+ ..+...|+..+.+..+.. .-+..++
T Consensus 742 l~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~W 820 (1238)
T KOG1127|consen 742 LSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLW 820 (1238)
T ss_pred HHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHH
Confidence 111 1111 1 0111111000 0124567777766654 122346778887777642 3355666
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcC
Q 006672 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHG 376 (636)
Q Consensus 300 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 376 (636)
+.+--. +..|++.-+.--|-...... +....+|..+.-.+.+..+++.|...|..... .|...|-.........|
T Consensus 821 naLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG 898 (1238)
T KOG1127|consen 821 NALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVG 898 (1238)
T ss_pred HHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHH
Confidence 655433 55566655554444433332 56778889999999999999999999988775 46778887777777889
Q ss_pred ChHHHHHHHHHH--hH--cCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHh--------hcCCCCChhHHHHHHHHHH
Q 006672 377 RYEQAIQYFKKM--MY--SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF--------DYFIEPSVKHHTVVVNLLS 444 (636)
Q Consensus 377 ~~~~A~~~~~~m--~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~--------~~~~~p~~~~~~~l~~~~~ 444 (636)
+.-+++.+|..- .. .|-.|+-.-|.....-....|+.++-+...+.+.. ..+.+.....|.+.+..+-
T Consensus 899 ~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlE 978 (1238)
T KOG1127|consen 899 RIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLE 978 (1238)
T ss_pred HHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHH
Confidence 999999999872 22 23344444444444444456665554433333211 0244455778999999999
Q ss_pred hcCCchHHHHHHHHHHHHHhccCC---CCchhHHHHHHHHHHcCChhHHHHHH
Q 006672 445 RVGQDSQGYQNSQNSFTKLLQLKP---KHPSSYVLLSNIYAAEGRWKDVARVR 494 (636)
Q Consensus 445 ~~g~~~~A~~~~~~~~~~~~~l~p---~~~~~~~~l~~~~~~~g~~~~A~~~~ 494 (636)
+.+.+++|.++..+...- ++..- .+.+.--.++..+...|.++.|...+
T Consensus 979 hL~ey~~a~ela~Rligl-Le~k~d~sqynvak~~~gRL~lslgefe~A~~a~ 1030 (1238)
T KOG1127|consen 979 HLEEYRAALELATRLIGL-LELKLDESQYNVAKPDAGRLELSLGEFESAKKAS 1030 (1238)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhh
Confidence 999999999988875532 22221 12223335667777778887665443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.9e-05 Score=85.58 Aligned_cols=202 Identities=12% Similarity=0.106 Sum_probs=149.1
Q ss_pred CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHc-CCC---CchhHHHHHhhHHhhcCCHHHHHHHHhhccC--CChhcHHHH
Q 006672 295 NDFTVVSALSACAKVGALEAGVRVHNYISCN-DFG---LKGAIGTALVDMYAKCGNIEAASLVFGETKE--KDLLTWTAM 368 (636)
Q Consensus 295 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l 368 (636)
+...|...|......++.+.|+++.+++++. ++. --..+|.+++++-..-|.-+...++|+++.+ .....|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 4456677777777788888888888877652 221 2245677777777777777788888888776 234567788
Q ss_pred HHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC---hhHHHHHHHHHHh
Q 006672 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS---VKHHTVVVNLLSR 445 (636)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l~~~~~~ 445 (636)
...|.+.+++++|.++++.|.+. ..-....|...+..+.+..+-+.|..++++..+ .-|. .....-.+.+-.+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~---~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALK---SLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh---hcchhhhHHHHHHHHHHHhh
Confidence 88888888888888888888875 334456788888888888888888888888775 2233 4445566677778
Q ss_pred cCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCcc
Q 006672 446 VGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKK 504 (636)
Q Consensus 446 ~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 504 (636)
.|+-+.+..+|+.. +.-.|+-...|+.+++.-.+.|..+.+..+|++....++.+
T Consensus 1613 ~GDaeRGRtlfEgl----l~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGL----LSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred cCCchhhHHHHHHH----HhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 88888888888743 34478778888888888888888888888888888877654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00013 Score=67.56 Aligned_cols=95 Identities=13% Similarity=0.040 Sum_probs=57.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHH
Q 006672 263 SWTAMINGFSQNGEAEKALAMFFQMLDA-GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341 (636)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 341 (636)
.+|.-...+.+.|+++.|.+-+-.|.-. .-..|++|...+.-. -..+++..+.+-+..+++.+ |....++..++-.|
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLlly 320 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFANLLLLY 320 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 4555555566777777777777666431 223456665544221 12344555666666666554 34566777777788
Q ss_pred hhcCCHHHHHHHHhhccC
Q 006672 342 AKCGNIEAASLVFGETKE 359 (636)
Q Consensus 342 ~~~g~~~~A~~~~~~~~~ 359 (636)
+|..-++-|-.++.+-..
T Consensus 321 CKNeyf~lAADvLAEn~~ 338 (459)
T KOG4340|consen 321 CKNEYFDLAADVLAENAH 338 (459)
T ss_pred hhhHHHhHHHHHHhhCcc
Confidence 888878877777765443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.7e-05 Score=83.41 Aligned_cols=133 Identities=10% Similarity=-0.000 Sum_probs=95.2
Q ss_pred CCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC--C-ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHH-HHH
Q 006672 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--K-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFL 401 (636)
Q Consensus 326 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~ 401 (636)
..+.++..+..|.+.....|..++|+.+++...+ | +...+..++..+.+.+++++|+..+++... ..|+.. ...
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence 3455677777777888888888888888877765 3 445677777778888888888888888777 666644 444
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 006672 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK 462 (636)
Q Consensus 402 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 462 (636)
.+..++.+.|++++|..+|+++.. ..+-+...+..+..++...|+.++|...|+++.+.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555567778888888888888774 22233667777778888888888888888766543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00013 Score=73.20 Aligned_cols=361 Identities=15% Similarity=0.098 Sum_probs=210.2
Q ss_pred HHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCh
Q 006672 102 RGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD-AFVRVHLADMYVQLGKT 180 (636)
Q Consensus 102 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~ 180 (636)
.+....|+++.|+.+|.+...... +|.+.|+.-..+++..|+++.|.+=-.+-++. .|+ ..-|+-...++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 345667888888888888776532 37777888888888888888877655555553 444 34566677777777888
Q ss_pred HHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHH-----HHHHhcCCHHHHHHHHhh
Q 006672 181 RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLI-----DGFMRKGDLKKAGELFEQ 255 (636)
Q Consensus 181 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~ 255 (636)
++|+..|.+-.+.. +.|...++.+..++... . ++.+.| .++..|..+. +.+...-.+..-++.+..
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~-----~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~ 157 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLED--Y-AADQLF-----TKPYFHEKLANLPLTNYSLSDPAYVKILEIIQK 157 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHH--H-Hhhhhc-----cCcHHHHHhhcChhhhhhhccHHHHHHHHHhhc
Confidence 88888888776554 55666666666666111 0 111111 1111111111 111111111111111111
Q ss_pred CCCCChhhHHHHHHHHHhCCChHHHHHHHH-----HHHH-------CCCCC----------------------CHHHHHH
Q 006672 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFF-----QMLD-------AGVRA----------------------NDFTVVS 301 (636)
Q Consensus 256 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~-----~m~~-------~g~~p----------------------~~~t~~~ 301 (636)
-+. . +.+|.+-.+...|...+. .+.. .+..| -..-...
T Consensus 158 ~p~----~----l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~ 229 (539)
T KOG0548|consen 158 NPT----S----LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKE 229 (539)
T ss_pred CcH----h----hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHH
Confidence 110 0 000000000000000000 0000 00011 0112345
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChh----------cHHHHHHH
Q 006672 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL----------TWTAMIWG 371 (636)
Q Consensus 302 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~li~~ 371 (636)
+.++.-+..+++.+.+-+....... .+..-++....+|...|...+....-+...+..-. +...+..+
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a 307 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNA 307 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhh
Confidence 6666667778888888888887665 56666777888888888887777666555442111 22334456
Q ss_pred HHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCCh-hHHHHHHHHHHhcCCch
Q 006672 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV-KHHTVVVNLLSRVGQDS 450 (636)
Q Consensus 372 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~~~~~g~~~ 450 (636)
|.+.++++.|+..|++.+.....|+.. .+....+++....+... -+.|.. .--..-+..+.+.|++.
T Consensus 308 ~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 308 YTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYP 375 (539)
T ss_pred hhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHH
Confidence 777788899999998877654554322 22334455555544433 233442 12223367788999999
Q ss_pred HHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 451 QGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 451 ~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
+|...|.+++ +.+|+|+..|...+-+|.+.|.+..|+.--+...+.
T Consensus 376 ~Av~~YteAI----kr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 376 EAVKHYTEAI----KRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHHHHHH----hcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 9999999765 568999999999999999999999999987777765
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00017 Score=68.13 Aligned_cols=294 Identities=10% Similarity=0.033 Sum_probs=166.1
Q ss_pred HHHHHhhcCCChHHHHHHhccCCCCCcchHHHHH---HHHHhCCCchHHHHHHHHhHHCCCCCCcccHHH-HHHHHHccC
Q 006672 68 QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLI---RGLAENSHFQSCISHFVFMLRLSVRPNRLTYPF-VSKSVASLS 143 (636)
Q Consensus 68 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~~ 143 (636)
-|-..+...|.+.+|+.-|....+-|+..|-++. ..|...|+...|+.-|.+.++ ++||-..-.. --..+.+.|
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcc
Confidence 4455566678899999999888777777777765 468888999999999988887 5787543221 123466889
Q ss_pred ChHHHHHHHHHHHHhCCCCCh--hH------------HHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHH
Q 006672 144 LLSLGRGLHCLIVKSGVEYDA--FV------------RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209 (636)
Q Consensus 144 ~~~~a~~~~~~~~~~g~~~~~--~~------------~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 209 (636)
.++.|..=|..+++.....+. .. ....+..+.-.|+...|......+.+.. +.|+..+..-..+|
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCY 199 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHH
Confidence 999999999999887532111 01 1122233344566666666666655444 45566666666666
Q ss_pred HhcCChHHHHHHHhhCC---CCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChh------hHHHHHHHHHhCCChHHH
Q 006672 210 SKIGYLRKAVELFGMMP---KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV------SWTAMINGFSQNGEAEKA 280 (636)
Q Consensus 210 ~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~li~~~~~~g~~~~A 280 (636)
...|++..|+.=++... ..+.....-+-..+...|+.+.++...++-.+.|.. .|..+ .+.
T Consensus 200 i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKkl----------kKv 269 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKL----------KKV 269 (504)
T ss_pred HhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHH----------HHH
Confidence 66666666665544433 344445555555555666666665555554432211 11110 000
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCC---chhHHHHHhhHHhhcCCHHHHHHHHhhc
Q 006672 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL---KGAIGTALVDMYAKCGNIEAASLVFGET 357 (636)
Q Consensus 281 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~ 357 (636)
...+.. +......+++.++.+-.+.+.+..... ....+..+-..|...|++.+|.+...++
T Consensus 270 ~K~les----------------~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev 333 (504)
T KOG0624|consen 270 VKSLES----------------AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV 333 (504)
T ss_pred HHHHHH----------------HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHH
Confidence 011111 111223344555555555554433221 1222334445555566666666666555
Q ss_pred cC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhH
Q 006672 358 KE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (636)
Q Consensus 358 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 390 (636)
.+ .|+.++.--..+|.-...++.|+.-|+...+
T Consensus 334 L~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 334 LDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 54 2344555555666666667777777777666
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=8.3e-05 Score=81.49 Aligned_cols=235 Identities=15% Similarity=0.063 Sum_probs=133.2
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHhhCCC--CC-hHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhC
Q 006672 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPK--KN-VASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274 (636)
Q Consensus 198 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 274 (636)
+...|..|+..+...+++++|.++.+.... |+ ...|-.+...+.+.++.+++..+ .++......
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~ 96 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQN 96 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccc
Confidence 344455555555555555555555443332 11 12222233344444443333322 334444444
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHH
Q 006672 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354 (636)
Q Consensus 275 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 354 (636)
.++.-+..+...|.+. .-+...+..+..+|.+.|+.+++..+++++++.. +.++.+.|.+...|+.. ++++|.+++
T Consensus 97 ~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 97 LKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred cchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 4554444444555543 2344567777778888888888888888888776 67788888888888888 888888877
Q ss_pred hhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHH-HHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCCh
Q 006672 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV-FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV 433 (636)
Q Consensus 355 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 433 (636)
.+.. ..|...+++..+.++|.++.. ..|+... |..+++. +....+..--+
T Consensus 173 ~KAV-----------~~~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~k----------------i~~~~~~~~~~ 223 (906)
T PRK14720 173 KKAI-----------YRFIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERK----------------VLGHREFTRLV 223 (906)
T ss_pred HHHH-----------HHHHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHH----------------HHhhhccchhH
Confidence 6643 236666788888888888877 4455432 2222222 11111212223
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 006672 434 KHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYA 482 (636)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~ 482 (636)
.++--+..-|....+++++..+++. +++.+|.|.-+..-++..|.
T Consensus 224 ~~~~~l~~~y~~~~~~~~~i~iLK~----iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 224 GLLEDLYEPYKALEDWDEVIYILKK----ILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHH----HHhcCCcchhhHHHHHHHHH
Confidence 3344445556666667777776663 34566766666666666665
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.0053 Score=61.96 Aligned_cols=400 Identities=13% Similarity=0.104 Sum_probs=240.5
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCC-cccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHH
Q 006672 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN-RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH 169 (636)
Q Consensus 91 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 169 (636)
+-|+.+|+.||+-+-.. ..+++.+.++++.. +-|+ ...|..-++.-....+++..+.+|.+-+..-+ +...|..
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~l 91 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVN--VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKL 91 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHH
Confidence 45899999999877555 89999999999985 4564 45677778888899999999999999877533 4556666
Q ss_pred HHHHHHh-cCChHHHH----HHHhh-CCCCCCC-CChhhHHHHHHH---------HHhcCChHHHHHHHhhCCC-C--Ch
Q 006672 170 LADMYVQ-LGKTRGAF----KVFDE-TPEKNKS-ESVLLWNVLING---------CSKIGYLRKAVELFGMMPK-K--NV 230 (636)
Q Consensus 170 li~~~~~-~g~~~~A~----~~~~~-m~~~~~~-~~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~-~--~~ 230 (636)
.++---+ .|+...++ +.|+- +.+.|+. .+-..|+..+.- +..+.+.+...++|.++.. | |.
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 5553332 23333221 22221 2222322 344557666553 4445567778888888873 1 11
Q ss_pred -HHHHH------HHHH-------HHhcCCHHHHHHHHhhCCC--------------CC-------hhhHHHHHHHHHhCC
Q 006672 231 -ASWVS------LIDG-------FMRKGDLKKAGELFEQMPE--------------KG-------VVSWTAMINGFSQNG 275 (636)
Q Consensus 231 -~~~~~------li~~-------~~~~g~~~~A~~~~~~~~~--------------~~-------~~~~~~li~~~~~~g 275 (636)
..|+- =|+. --+...+..|.++++++.. ++ +..|-.+|.-=..++
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNp 251 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Confidence 11111 1111 0122345566666665431 11 223555554322222
Q ss_pred Ch--------HHHHHHHHHH-HHCCCCCCHHH-HHHHHH----HHHhcCC-------cHHHHHHHHHHHHcCCCCchhHH
Q 006672 276 EA--------EKALAMFFQM-LDAGVRANDFT-VVSALS----ACAKVGA-------LEAGVRVHNYISCNDFGLKGAIG 334 (636)
Q Consensus 276 ~~--------~~A~~l~~~m-~~~g~~p~~~t-~~~ll~----~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~ 334 (636)
.- ....-.+++. .-.+..|+..- +...+. .+...|+ .+++..+++..+..-...+..+|
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1122222222 22344444321 111111 2233343 34555566555543333344455
Q ss_pred HHHhhHHhhc---CCHHHHHHHHhhccC----CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHH
Q 006672 335 TALVDMYAKC---GNIEAASLVFGETKE----KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTA 406 (636)
Q Consensus 335 ~~li~~~~~~---g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a 406 (636)
..+.+.--.. ...+.....+++... .-..+|...+..-.+....+.|..+|.++.+.+..+- .....+++.-
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 4444321111 123334444444433 2344788888888888889999999999999888883 4455666654
Q ss_pred HHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCC-CchhHHHHHHHHHHcC
Q 006672 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPK-HPSSYVLLSNIYAAEG 485 (636)
Q Consensus 407 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~-~~~~~~~l~~~~~~~g 485 (636)
--.++.+-|.++|+.-.+.+| .++.--...++-+...++-..|..+|++.... .+.|+ ...+|..++.--..-|
T Consensus 412 -~cskD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s--~l~~~ks~~Iw~r~l~yES~vG 486 (656)
T KOG1914|consen 412 -YCSKDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTS--VLSADKSKEIWDRMLEYESNVG 486 (656)
T ss_pred -HhcCChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhc--cCChhhhHHHHHHHHHHHHhcc
Confidence 446889999999998776554 44555578899999999999999999988876 33332 4579999999999999
Q ss_pred ChhHHHHHHHHHHhC
Q 006672 486 RWKDVARVRTLMQRR 500 (636)
Q Consensus 486 ~~~~A~~~~~~m~~~ 500 (636)
+...+.++-+++...
T Consensus 487 dL~si~~lekR~~~a 501 (656)
T KOG1914|consen 487 DLNSILKLEKRRFTA 501 (656)
T ss_pred cHHHHHHHHHHHHHh
Confidence 999999998877653
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00015 Score=71.39 Aligned_cols=183 Identities=9% Similarity=0.048 Sum_probs=136.1
Q ss_pred hcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcC-CHHHHHHHHhhccC---CChhcHHHHHHHHHHcCCh--HHH
Q 006672 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG-NIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRY--EQA 381 (636)
Q Consensus 308 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A 381 (636)
..+..++|......+++.. |.+..+|+....++.+.| .++++...++++.+ ++..+|+.....+.+.|+. +++
T Consensus 49 ~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 49 SDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHH
Confidence 3467788888888888765 556667777777777777 67999999998775 4566788776666666663 678
Q ss_pred HHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhc---CCc----hHHH
Q 006672 382 IQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV---GQD----SQGY 453 (636)
Q Consensus 382 ~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~---g~~----~~A~ 453 (636)
+.+++++++ ..|. ..+|.....++.+.|+++++++.++++++. -.-+...|+....++.+. |.. +++.
T Consensus 128 l~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 128 LEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 999999998 5555 568888888899999999999999999852 234567777777666655 333 3445
Q ss_pred HHHHHHHHHHhccCCCCchhHHHHHHHHHHc----CChhHHHHHHHHHHh
Q 006672 454 QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAE----GRWKDVARVRTLMQR 499 (636)
Q Consensus 454 ~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~ 499 (636)
++.. +.++++|+|.++|.-+..++... ++..+|.+...+..+
T Consensus 204 ~y~~----~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 204 KYTI----DAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHH----HHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 5444 45678999999999999999884 344667777766554
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.30 E-value=6.3e-05 Score=71.62 Aligned_cols=182 Identities=10% Similarity=-0.059 Sum_probs=124.5
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchh---
Q 006672 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND---FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA--- 332 (636)
Q Consensus 259 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--- 332 (636)
.....+..++..+.+.|++++|...|+++.... +.+. .++..+..++...|++++|...++.+.+.. |.+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHH
Confidence 346678888999999999999999999998753 2222 456777888999999999999999998754 22222
Q ss_pred HHHHHhhHHhhc--------CCHHHHHHHHhhccC--CC-hhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHH
Q 006672 333 IGTALVDMYAKC--------GNIEAASLVFGETKE--KD-LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401 (636)
Q Consensus 333 ~~~~li~~~~~~--------g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 401 (636)
.+..+...+.+. |+.++|.+.|+++.. |+ ...+..+..... .... . .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~~~-------~-------~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LRNR-------L-------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HHHH-------H-------HHHHH
Confidence 455555666554 788999999998875 32 222322211110 0000 0 00112
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHH
Q 006672 402 AILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSF 460 (636)
Q Consensus 402 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (636)
.+...+...|++++|...++.....+.-.| ....+..++.++.+.|++++|...++...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345567888999999999988876443333 35778888899999999999998877544
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00014 Score=66.58 Aligned_cols=160 Identities=12% Similarity=0.140 Sum_probs=123.3
Q ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHH
Q 006672 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMI 369 (636)
Q Consensus 293 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 369 (636)
.|+......+-.++...|+-+....+.....- ..+.|..+...++....+.|++..|...|.+... +|...|+.+.
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~-~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lg 141 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI-AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLG 141 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc-cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHH
Confidence 44333225555666677777777766666442 2356667777788888999999999999988775 5778999999
Q ss_pred HHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCC
Q 006672 370 WGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448 (636)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~ 448 (636)
.+|.+.|+.+.|..-|.+..+ +.|+ +..++.+.-.+.-.|+.+.|..++..... .-.-+...-..+.-+.+..|+
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l--~~~ad~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL--SPAADSRVRQNLALVVGLQGD 217 (257)
T ss_pred HHHHHccChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh--CCCCchHHHHHHHHHHhhcCC
Confidence 999999999999999999988 6776 55778888888889999999999988764 223366777888888899999
Q ss_pred chHHHHHHH
Q 006672 449 DSQGYQNSQ 457 (636)
Q Consensus 449 ~~~A~~~~~ 457 (636)
+++|.++..
T Consensus 218 ~~~A~~i~~ 226 (257)
T COG5010 218 FREAEDIAV 226 (257)
T ss_pred hHHHHhhcc
Confidence 999988876
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=8.9e-05 Score=67.87 Aligned_cols=113 Identities=12% Similarity=0.111 Sum_probs=47.7
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhH-HhhcCC--HHHHHH
Q 006672 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM-YAKCGN--IEAASL 352 (636)
Q Consensus 276 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~--~~~A~~ 352 (636)
+.++++..+++..+.+ +.|...|..+...+...|+++.|...++...+.. +.+..++..+..+ |...|+ .++|.+
T Consensus 54 ~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 54 TPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred hHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 3344444444443332 3344444444444444444444444444444433 3334444444443 233333 244444
Q ss_pred HHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhH
Q 006672 353 VFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (636)
Q Consensus 353 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 390 (636)
++++..+ .+..++..+...+.+.|++++|+..|+++.+
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444332 2333444444444444444444444444444
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00065 Score=62.26 Aligned_cols=222 Identities=12% Similarity=0.056 Sum_probs=142.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHH-HHHHHHHHHcCCCCchhHHHHHhhHH
Q 006672 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG-VRVHNYISCNDFGLKGAIGTALVDMY 341 (636)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~li~~~ 341 (636)
.-.-+-.+|...|.+...+. +... |-.|....+..+.......++.+.- ..+.+.+.......+......-...|
T Consensus 43 ~d~y~~raylAlg~~~~~~~---eI~~-~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~ 118 (299)
T KOG3081|consen 43 LDVYMYRAYLALGQYQIVIS---EIKE-GKATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIY 118 (299)
T ss_pred HHHHHHHHHHHccccccccc---cccc-ccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHh
Confidence 33334556666666543332 2222 2234444444443333334443332 23444444444444444444555678
Q ss_pred hhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHh----cCcHHHHH
Q 006672 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY----SGQVKLAL 417 (636)
Q Consensus 342 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~ 417 (636)
.+.|++++|.+...... +....-.=...+.+..+.+-|.+.+++|.+ +. +..|.+.|..++.+ .+.+.+|.
T Consensus 119 ~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~--id-ed~tLtQLA~awv~la~ggek~qdAf 193 (299)
T KOG3081|consen 119 MHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQ--ID-EDATLTQLAQAWVKLATGGEKIQDAF 193 (299)
T ss_pred hcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cc-hHHHHHHHHHHHHHHhccchhhhhHH
Confidence 88999999999888733 333333333445567788999999999987 32 45677777776654 45688999
Q ss_pred HHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHH-HHHHHH
Q 006672 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDV-ARVRTL 496 (636)
Q Consensus 418 ~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~ 496 (636)
-+|++|.. ...|++.+.+.+..+....|++++|..+++.+..+ +|+++.+...++-+-...|+..++ .+...+
T Consensus 194 yifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k----d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 194 YIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK----DAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred HHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc----cCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 99999974 46788888898988999999999999999876644 788888888888877778876554 445555
Q ss_pred HHh
Q 006672 497 MQR 499 (636)
Q Consensus 497 m~~ 499 (636)
.+.
T Consensus 268 Lk~ 270 (299)
T KOG3081|consen 268 LKL 270 (299)
T ss_pred HHh
Confidence 544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00017 Score=71.63 Aligned_cols=137 Identities=13% Similarity=0.112 Sum_probs=103.1
Q ss_pred HHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHH
Q 006672 340 MYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKL 415 (636)
Q Consensus 340 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 415 (636)
.+...|+.++|+..++.+.. .|+..+......+...++..+|.+.++++.. ..|+ ......+..++.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcCChHH
Confidence 34556777788777777653 4566677777788888888888888888888 6777 4566667778888888888
Q ss_pred HHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHH
Q 006672 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRT 495 (636)
Q Consensus 416 a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (636)
|..+++.... ..+-++..|..|..+|...|+..+|... .+..|...|+|++|.....
T Consensus 393 ai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A---------------------~AE~~~~~G~~~~A~~~l~ 449 (484)
T COG4783 393 AIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLA---------------------RAEGYALAGRLEQAIIFLM 449 (484)
T ss_pred HHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHH---------------------HHHHHHhCCCHHHHHHHHH
Confidence 8888888763 4566788888888888888887776553 3356777888888888888
Q ss_pred HHHhCC
Q 006672 496 LMQRRS 501 (636)
Q Consensus 496 ~m~~~g 501 (636)
..+++.
T Consensus 450 ~A~~~~ 455 (484)
T COG4783 450 RASQQV 455 (484)
T ss_pred HHHHhc
Confidence 887754
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.4e-05 Score=67.13 Aligned_cols=110 Identities=13% Similarity=0.142 Sum_probs=87.5
Q ss_pred HHHHHhHcCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 006672 384 YFKKMMYSGTEPDG-TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK 462 (636)
Q Consensus 384 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 462 (636)
.++++.. ..|+. .....+...+...|++++|.+.|+.+.. . -+.+...+..+...|.+.|++++|...++++.
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-- 78 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA-Y-DPYNSRYWLGLAACCQMLKEYEEAIDAYALAA-- 78 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH-h-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 4555555 55654 3456666778889999999999998875 2 23467888889999999999999999888544
Q ss_pred HhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 463 LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 463 ~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
+++|+++..+..++.+|...|++++|...+++..+..
T Consensus 79 --~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 79 --ALDPDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred --hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 5689999999999999999999999999999888754
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00018 Score=65.79 Aligned_cols=156 Identities=13% Similarity=0.075 Sum_probs=118.4
Q ss_pred chhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCC-CHHHHHHHHH
Q 006672 330 KGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILT 405 (636)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 405 (636)
|..+ ..+-..+.-.|+-+.+..+...... .|....+..+....+.|++..|+..|++... ..| |..+|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHH
Confidence 4444 5566667777777777777766543 3555666688888888999999999998887 444 4678888888
Q ss_pred HHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHc
Q 006672 406 ACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAE 484 (636)
Q Consensus 406 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~ 484 (636)
+|.+.|+.++|..-|.+..+ +.| ++..++.+.-.|.-.|+++.|..++..+. ...+.|..+-..|..+....
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~---L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~----l~~~ad~~v~~NLAl~~~~~ 215 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALE---LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAY----LSPAADSRVRQNLALVVGLQ 215 (257)
T ss_pred HHHHccChhHHHHHHHHHHH---hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHH----hCCCCchHHHHHHHHHHhhc
Confidence 89999999999998888875 333 36677888888888899999998888664 23455788888888888889
Q ss_pred CChhHHHHHHH
Q 006672 485 GRWKDVARVRT 495 (636)
Q Consensus 485 g~~~~A~~~~~ 495 (636)
|++++|..+..
T Consensus 216 g~~~~A~~i~~ 226 (257)
T COG5010 216 GDFREAEDIAV 226 (257)
T ss_pred CChHHHHhhcc
Confidence 99988887643
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=7.9e-05 Score=63.49 Aligned_cols=117 Identities=9% Similarity=0.010 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHH
Q 006672 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLL 477 (636)
Q Consensus 399 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l 477 (636)
..-.+..-+...|++++|.++|+.+.. +.| +..-|-.|.-++-..|++++|++.|.++. .++|+|+.++..+
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~---~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~----~L~~ddp~~~~~a 109 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTI---YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA----QIKIDAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH----hcCCCCchHHHHH
Confidence 444455566789999999999998874 445 46778889999999999999999998554 7899999999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCccCCeeeEEEECCEEEEecCCCcccHHHHHHHHHHHHHHHH
Q 006672 478 SNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHKLAKEIHSKLEDIMAGAR 543 (636)
Q Consensus 478 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~i~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~ 543 (636)
+.+|...|+.+.|.+.|+...... +++|+-.++.++.+.++..+.
T Consensus 110 g~c~L~lG~~~~A~~aF~~Ai~~~---------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 110 AECYLACDNVCYAIKALKAVVRIC---------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHh---------------------ccChhHHHHHHHHHHHHHHhh
Confidence 999999999999999999887632 236777777777776666553
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.9e-06 Score=52.56 Aligned_cols=35 Identities=26% Similarity=0.479 Sum_probs=31.6
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCc
Q 006672 95 HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129 (636)
Q Consensus 95 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 129 (636)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999874
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0015 Score=65.15 Aligned_cols=195 Identities=13% Similarity=0.116 Sum_probs=122.0
Q ss_pred CChHHHHHHhccCCC------CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHH
Q 006672 77 KSIDYALSIFDHFTP------KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150 (636)
Q Consensus 77 g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 150 (636)
.++.+++..-++++. ++...+...+.+.........+-.++. +... -.-...-|...+. ....|.++.|+.
T Consensus 251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~-~~~~aa~YG~A~~-~~~~~~~d~A~~ 327 (484)
T COG4783 251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLA-KRSK-RGGLAAQYGRALQ-TYLAGQYDEALK 327 (484)
T ss_pred hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHH-HHhC-ccchHHHHHHHHH-HHHhcccchHHH
Confidence 345566666666663 344455555555444332222222222 2221 0112223433333 335677888888
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC---C
Q 006672 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP---K 227 (636)
Q Consensus 151 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~ 227 (636)
.+..+++. .+.|+.......+.+.+.|+.++|.+.++.+.... +-....+-.+..+|.+.|++.+|+.+++... +
T Consensus 328 ~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 328 LLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 88887765 35566677777778888888888888888877653 3335666777778888888888888877766 3
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006672 228 KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290 (636)
Q Consensus 228 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 290 (636)
.|+..|..|..+|...|+..+|..-. ..+|...|++++|...+....+.
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~--------------AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLAR--------------AEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHH--------------HHHHHhCCCHHHHHHHHHHHHHh
Confidence 46677888888888888777765543 34566778888888777777664
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.07 E-value=6.9e-06 Score=51.39 Aligned_cols=34 Identities=32% Similarity=0.769 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 006672 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295 (636)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 295 (636)
++||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 4799999999999999999999999999999997
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0027 Score=58.30 Aligned_cols=174 Identities=12% Similarity=0.099 Sum_probs=103.9
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCC-Chh
Q 006672 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK-DLL 363 (636)
Q Consensus 285 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~ 363 (636)
+.+.......+......-...|.+.+++++|.+..... .+......=+..+.+..+++-|.+.++.|.+- +-.
T Consensus 97 E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~ 170 (299)
T KOG3081|consen 97 ELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA 170 (299)
T ss_pred HHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH
Confidence 33333333333333333344566667777766655431 12222222344455666777777777777763 334
Q ss_pred cHHHHHHHHHH----cCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHH
Q 006672 364 TWTAMIWGLAI----HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439 (636)
Q Consensus 364 ~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 439 (636)
+.+-|..++.+ .+.+.+|.-+|++|.+. ..|+..+.+....++...|++++|..+++....+ -..++++...+
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dpetL~Nl 247 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCHHHHHHH
Confidence 55545555443 34577888888888764 6778888888888888888888888888887742 33456666666
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHhccCCCC
Q 006672 440 VNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH 470 (636)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~ 470 (636)
+-.--..|...++.+ +-..++....|..
T Consensus 248 iv~a~~~Gkd~~~~~---r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTE---RNLSQLKLSHPEH 275 (299)
T ss_pred HHHHHHhCCChHHHH---HHHHHHHhcCCcc
Confidence 666666677655543 2334445556654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00072 Score=74.38 Aligned_cols=59 Identities=12% Similarity=0.147 Sum_probs=29.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 006672 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323 (636)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 323 (636)
++-.+..+|-+.|+.++|...|+++.+.. +-|....+.+.-.++.. ++++|.+++..++
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 34444555555555555555555555543 33444455555555544 5555555554443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.02 E-value=8.5e-06 Score=50.61 Aligned_cols=34 Identities=26% Similarity=0.451 Sum_probs=29.1
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCC
Q 006672 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127 (636)
Q Consensus 94 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 127 (636)
+.+||.+|.+|++.|+++.|+.+|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3578888888888888888888888888888877
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00032 Score=76.23 Aligned_cols=166 Identities=13% Similarity=0.032 Sum_probs=128.9
Q ss_pred HHHhCCChHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCH
Q 006672 270 GFSQNGEAEKALAMFFQMLD--AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347 (636)
Q Consensus 270 ~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 347 (636)
.....+....+.+-+-+++. ...+.+...+..|..+....|.+++|..+++.+.+.. |.+......++..+.+.+++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~ 136 (694)
T PRK15179 58 VLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGI 136 (694)
T ss_pred HHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccH
Confidence 34444444444444433332 2345568888889999999999999999999998765 56677788899999999999
Q ss_pred HHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHh
Q 006672 348 EAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSM 423 (636)
Q Consensus 348 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m 423 (636)
++|...+++... .+....+.+..++.+.|++++|+.+|+++.. ..|+ ..++.++..++-..|+.++|...|+..
T Consensus 137 eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 137 EAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999886 3456777888899999999999999999998 4455 678999999999999999999999999
Q ss_pred HhhcCCCCChhHHHHHH
Q 006672 424 RFDYFIEPSVKHHTVVV 440 (636)
Q Consensus 424 ~~~~~~~p~~~~~~~l~ 440 (636)
.+. ..|...-|+.++
T Consensus 215 ~~~--~~~~~~~~~~~~ 229 (694)
T PRK15179 215 LDA--IGDGARKLTRRL 229 (694)
T ss_pred HHh--hCcchHHHHHHH
Confidence 852 345566665543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=7.4e-05 Score=69.69 Aligned_cols=110 Identities=17% Similarity=0.135 Sum_probs=89.5
Q ss_pred HHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcC
Q 006672 370 WGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVG 447 (636)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g 447 (636)
.-+.+.+++++|+..|.+.++ +.|+ .+-|..-..+|++.|.++.|++-.+..+. +.|. ...|..|.-+|...|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccC
Confidence 346678999999999999999 7776 55666777899999999999998888774 5565 678999999999999
Q ss_pred CchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChh
Q 006672 448 QDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWK 488 (636)
Q Consensus 448 ~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~ 488 (636)
++++|++.|+ ++++++|+|......|-.+-.+.+...
T Consensus 164 k~~~A~~ayk----KaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 164 KYEEAIEAYK----KALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred cHHHHHHHHH----hhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999887 566899999877777766555444433
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00015 Score=72.92 Aligned_cols=123 Identities=11% Similarity=0.198 Sum_probs=98.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh
Q 006672 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445 (636)
Q Consensus 366 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~ 445 (636)
.+++..+...++++.|+++|+++.+. .|+. ...++..+...++-.+|.+++++..++ .+-+.......++.|.+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~--~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER--DPEV--AVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc--CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHh
Confidence 34555666678899999999999884 3553 334677777788888999998888752 33457777778888999
Q ss_pred cCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHH
Q 006672 446 VGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQ 498 (636)
Q Consensus 446 ~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 498 (636)
.++++.|.++.+++ .++.|.+..+|..|+.+|...|++++|+..++.+-
T Consensus 247 k~~~~lAL~iAk~a----v~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKA----VELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHH----HHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999988755 47789999999999999999999999999988764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0059 Score=55.75 Aligned_cols=193 Identities=15% Similarity=0.150 Sum_probs=133.6
Q ss_pred CCChHHHHHHHHHHHH---CC-CCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHH
Q 006672 274 NGEAEKALAMFFQMLD---AG-VRANDFT-VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348 (636)
Q Consensus 274 ~g~~~~A~~l~~~m~~---~g-~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 348 (636)
..+.++..+++.++.. .| ..|+..+ |-.++-+....|..+.|...++.+...- |-+..+...-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 3467777777777764 34 5566654 4456667778888899998888887654 445454444444456678899
Q ss_pred HHHHHHhhccCC---ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHh
Q 006672 349 AASLVFGETKEK---DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425 (636)
Q Consensus 349 ~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 425 (636)
+|.++++.+.+. |.+++-.-+......|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 999999888863 4556666666677778888888888887774 455688999999999999999999999998874
Q ss_pred hcCCCCC-hhHHHHHHHHHHhcCC---chHHHHHHHHHHHHHhccCCCCchhHH
Q 006672 426 DYFIEPS-VKHHTVVVNLLSRVGQ---DSQGYQNSQNSFTKLLQLKPKHPSSYV 475 (636)
Q Consensus 426 ~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~l~p~~~~~~~ 475 (636)
+.|. +..+..+.+.+.-.|. ++-|.++|. +.+++.|.+...+.
T Consensus 183 ---~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~----~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 183 ---IQPFNPLYFQRLAEVLYTQGGAENLELARKYYE----RALKLNPKNLRALF 229 (289)
T ss_pred ---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH----HHHHhChHhHHHHH
Confidence 4454 5555667776655443 444555555 45577776555443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.5e-05 Score=49.52 Aligned_cols=34 Identities=26% Similarity=0.595 Sum_probs=30.7
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 006672 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294 (636)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 294 (636)
+.+||.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00022 Score=61.07 Aligned_cols=88 Identities=11% Similarity=0.065 Sum_probs=40.3
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCCh
Q 006672 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRY 378 (636)
Q Consensus 302 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 378 (636)
+...+...|++++|.+.++.+...+ +.+...+..+...|.+.|++++|...|+.... .+...|..+...|...|++
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 101 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEP 101 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCH
Confidence 3334444445555555544444432 33444444444444444444444444444332 2233444444445555555
Q ss_pred HHHHHHHHHHhH
Q 006672 379 EQAIQYFKKMMY 390 (636)
Q Consensus 379 ~~A~~~~~~m~~ 390 (636)
++|+..|++..+
T Consensus 102 ~~A~~~~~~al~ 113 (135)
T TIGR02552 102 ESALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.92 E-value=2.1e-05 Score=61.02 Aligned_cols=82 Identities=15% Similarity=0.226 Sum_probs=53.7
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhH
Q 006672 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKD 489 (636)
Q Consensus 410 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~ 489 (636)
.|+++.|+.+++++.+.....|+...+-.++.+|.+.|++++|.+++++ .+.+|.++.....++.+|.+.|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-----~~~~~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-----LKLDPSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-----HTHHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-----hCCCCCCHHHHHHHHHHHHHhCCHHH
Confidence 4667777777777765322122344555577777777777777777765 24455566666677888888888888
Q ss_pred HHHHHHH
Q 006672 490 VARVRTL 496 (636)
Q Consensus 490 A~~~~~~ 496 (636)
|++++++
T Consensus 77 Ai~~l~~ 83 (84)
T PF12895_consen 77 AIKALEK 83 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 8888765
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00046 Score=69.42 Aligned_cols=122 Identities=13% Similarity=0.083 Sum_probs=79.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHH
Q 006672 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314 (636)
Q Consensus 235 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 314 (636)
+|+..+...++++.|..+|+++.+.+...+..++..+...++..+|.+++.+..... +-+...+..-...+.+.++.+.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHH
Confidence 445555556777777777777776666666667777777777777777777777542 3344444444555666677777
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhcc
Q 006672 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358 (636)
Q Consensus 315 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 358 (636)
|..+.+.+.+.. |.+..+|..|+.+|.+.|+++.|...++.++
T Consensus 253 AL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 253 ALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777666553 4455566666666666666666666666655
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00088 Score=58.13 Aligned_cols=124 Identities=15% Similarity=0.156 Sum_probs=78.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCH----HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC--hhHHHH
Q 006672 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG----TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS--VKHHTV 438 (636)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~ 438 (636)
|..++..+ ..++...+...++.+.+. .|+. .....+...+...|++++|...|+.+.. ....|. ......
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~-~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALA-NAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-hCCCHHHHHHHHHH
Confidence 33444444 367777777777777764 2332 2333344666777888888888887775 222222 223445
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHH
Q 006672 439 VVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLM 497 (636)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 497 (636)
+..++...|++++|+..++.. .-.+..+..+..++.+|.+.|++++|...|+..
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~-----~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQI-----PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhc-----cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 667777888888888877532 223345567778888888888888888887754
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00081 Score=58.34 Aligned_cols=113 Identities=12% Similarity=0.088 Sum_probs=81.5
Q ss_pred cCCHHHHHHHHhhccCCChh------cHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC--HHHHHHHHHHHHhcCcHHH
Q 006672 344 CGNIEAASLVFGETKEKDLL------TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD--GTVFLAILTACWYSGQVKL 415 (636)
Q Consensus 344 ~g~~~~A~~~~~~~~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~ 415 (636)
.++...+...++.+...... ..-.+...+...|++++|...|+........|+ ......+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 56666666666666652221 233355677888999999999999998653333 2345556778889999999
Q ss_pred HHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHH
Q 006672 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNS 459 (636)
Q Consensus 416 a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 459 (636)
|+..++... +-...+..+...+++|.+.|+.++|...|+++
T Consensus 104 Al~~L~~~~---~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQIP---DEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhcc---CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 999997643 22344667788999999999999999998854
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.70 E-value=5.3e-05 Score=45.76 Aligned_cols=31 Identities=32% Similarity=0.713 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 006672 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292 (636)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 292 (636)
++||+++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.69 E-value=4.6e-05 Score=46.02 Aligned_cols=31 Identities=23% Similarity=0.380 Sum_probs=24.8
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhHHCCC
Q 006672 95 HIFNVLIRGLAENSHFQSCISHFVFMLRLSV 125 (636)
Q Consensus 95 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 125 (636)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00063 Score=53.48 Aligned_cols=92 Identities=11% Similarity=0.192 Sum_probs=55.4
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 006672 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIY 481 (636)
Q Consensus 402 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~ 481 (636)
.+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.++++. ...|.+..++..++.++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~~ 78 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKAL----ELDPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCCcchhHHHHHHHHH
Confidence 3444455556666666666655531 11223455556666666677777776666433 44566666777777777
Q ss_pred HHcCChhHHHHHHHHHHh
Q 006672 482 AAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 482 ~~~g~~~~A~~~~~~m~~ 499 (636)
...|++++|...+++..+
T Consensus 79 ~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 79 YKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHhHHHHHHHHHHHHc
Confidence 777777777777766654
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00014 Score=53.86 Aligned_cols=64 Identities=11% Similarity=0.189 Sum_probs=56.8
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcC-ChhHHHHHHHHHHh
Q 006672 432 SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEG-RWKDVARVRTLMQR 499 (636)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 499 (636)
++..|..++..+.+.|++++|+..|+++. +++|.++..|..++.+|...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai----~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAI----ELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHH----HHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45678889999999999999999998655 669999999999999999999 79999999998876
|
... |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0017 Score=53.95 Aligned_cols=94 Identities=17% Similarity=0.164 Sum_probs=49.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHH
Q 006672 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD----GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVV 439 (636)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l 439 (636)
+...+..+...|++++|.+.|+++... .|+ ...+..+..++...|++++|.+.|+.+.....-.| ....+..+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 344455555666666666666666552 222 12344455556666666666666666553221111 13445555
Q ss_pred HHHHHhcCCchHHHHHHHHHH
Q 006672 440 VNLLSRVGQDSQGYQNSQNSF 460 (636)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~ 460 (636)
..++.+.|+.++|...++++.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~ 103 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVI 103 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHH
Confidence 555666666666666655443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0011 Score=55.10 Aligned_cols=100 Identities=12% Similarity=0.094 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCC---chh
Q 006672 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH---PSS 473 (636)
Q Consensus 398 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~---~~~ 473 (636)
.++..+...+...|++++|.+.|+.+.....-.| ....+..++.++.+.|++++|...++++. ...|.+ +.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~p~~~~~~~~ 78 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVV----KKYPKSPKAPDA 78 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHH----HHCCCCCcccHH
Confidence 3556677788899999999999999986332111 24567779999999999999999999666 345654 567
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 474 YVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 474 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
+..++.++.+.|++++|...++++.+..
T Consensus 79 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 79 LLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 8999999999999999999999998864
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0015 Score=65.95 Aligned_cols=106 Identities=9% Similarity=0.075 Sum_probs=82.8
Q ss_pred HHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhc
Q 006672 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRV 446 (636)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~ 446 (636)
...+...|++++|+..|+++++ ..|+ ...|..+..+|...|++++|+..++++.. +.| +...|..++.+|...
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 3455677899999999999988 5565 55777777888899999999999998875 344 477888888999999
Q ss_pred CCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHH
Q 006672 447 GQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAA 483 (636)
Q Consensus 447 g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~ 483 (636)
|++++|...++++ ++++|.++.....+..+..+
T Consensus 84 g~~~eA~~~~~~a----l~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 84 EEYQTAKAALEKG----ASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred CCHHHHHHHHHHH----HHhCCCCHHHHHHHHHHHHH
Confidence 9999999988754 46788888877776655443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0024 Score=56.98 Aligned_cols=105 Identities=14% Similarity=0.134 Sum_probs=70.6
Q ss_pred hhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHH
Q 006672 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD--GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTV 438 (636)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 438 (636)
...|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|...++.... +.|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHH
Confidence 44667777777778888888888888876422221 23677777788888888888888888764 2333 455566
Q ss_pred HHHHHH-------hcCCchHHHHHHHHHHH---HHhccCCC
Q 006672 439 VVNLLS-------RVGQDSQGYQNSQNSFT---KLLQLKPK 469 (636)
Q Consensus 439 l~~~~~-------~~g~~~~A~~~~~~~~~---~~~~l~p~ 469 (636)
+...+. +.|++++|...++++.. +.++.+|+
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 666666 78888877777775433 34555664
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.18 Score=54.47 Aligned_cols=209 Identities=11% Similarity=0.023 Sum_probs=133.3
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHH--hhcCCChHHHHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHH
Q 006672 44 TKQLRQIHAQIILHNLFASSRITTQLISS--ASLHKSIDYALSIFDHFT---PKNLHIFNVLIRGLAENSHFQSCISHFV 118 (636)
Q Consensus 44 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 118 (636)
+..|.+..+.+++.. |+. .|...+.+ +.+.|+.++|..+++... ..|..|...+-..|...++.++|..+|+
T Consensus 25 fkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 25 FKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred HHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 666777677766652 332 23333333 467899999998888554 4477788888899999999999999999
Q ss_pred HhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC----------hHHHHHHHh
Q 006672 119 FMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK----------TRGAFKVFD 188 (636)
Q Consensus 119 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~ 188 (636)
+... ..|+..-...+..++.+.+++..-.++--++-+. ++.+++.+=++++.+...-. ..-|.+.++
T Consensus 102 ~~~~--~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~ 178 (932)
T KOG2053|consen 102 RANQ--KYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQ 178 (932)
T ss_pred HHHh--hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHH
Confidence 9876 4577777777888888888887665555555443 45556655556666554321 234666666
Q ss_pred hCCCCC-CCCChhhHHHHHHHHHhcCChHHHHHHHhh-----CCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 006672 189 ETPEKN-KSESVLLWNVLINGCSKIGYLRKAVELFGM-----MPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258 (636)
Q Consensus 189 ~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-----m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 258 (636)
.+.+.+ -..+..-...-...+-..|++++|++++.. ...-+...-+--++.+...+++.+..++-.++..
T Consensus 179 ~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 179 KLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 666443 112222222333445567888888888732 2233444555666777777777776665555443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.016 Score=53.01 Aligned_cols=185 Identities=11% Similarity=0.083 Sum_probs=132.6
Q ss_pred CcHHHHHHHHHHHH---cC-CCCch-hHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHH---HHHHHHHcCChHHHH
Q 006672 311 ALEAGVRVHNYISC---ND-FGLKG-AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA---MIWGLAIHGRYEQAI 382 (636)
Q Consensus 311 ~~~~a~~~~~~~~~---~~-~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~ 382 (636)
+.++..+++..++. .| ..++. .++.-++-+...+|+.+.|...++++..+=+-++.. -.--+-..|++++|+
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~ 106 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAI 106 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHH
Confidence 44555555555442 22 33433 344556666778899999999998876521212111 111244579999999
Q ss_pred HHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 006672 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK 462 (636)
Q Consensus 383 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 462 (636)
++++..++.+ +.|.+++..=+...-..|..-+|++-+....+ .+..|.+.|.-+.+.|...|++++|.--++++
T Consensus 107 e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~--- 180 (289)
T KOG3060|consen 107 EYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL--- 180 (289)
T ss_pred HHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH---
Confidence 9999999865 23456776666666667888889888888875 46788999999999999999999999888754
Q ss_pred HhccCCCCchhHHHHHHHHHHcC---ChhHHHHHHHHHHhCCC
Q 006672 463 LLQLKPKHPSSYVLLSNIYAAEG---RWKDVARVRTLMQRRSI 502 (636)
Q Consensus 463 ~~~l~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~g~ 502 (636)
+-+.|.++..+..++..+...| +.+-|.+++.+..+...
T Consensus 181 -ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 181 -LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred -HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 4678999999999999887766 45568888988887543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0003 Score=51.31 Aligned_cols=58 Identities=17% Similarity=0.319 Sum_probs=45.6
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 439 VVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
++..+.+.|++++|.+.|+++ ++.+|.++..+..++.++...|++++|..+++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~----l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQA----LKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHH----HCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH----HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456677888888888888744 4677888888888888888888888888888888764
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.032 Score=54.54 Aligned_cols=101 Identities=11% Similarity=0.129 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHHhcCCcHHHHHHHHHHHHc--CCCCc--h
Q 006672 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVR-----ANDF-TVVSALSACAKVGALEAGVRVHNYISCN--DFGLK--G 331 (636)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~--~ 331 (636)
..+..++..+.+.|++++|.++|++....-.. ++.. .+...+-++...|+...|...++..... ++..+ .
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~ 235 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREY 235 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 34566777888888888888888887764322 1111 2222333445567777777777776543 22222 3
Q ss_pred hHHHHHhhHHhh--cCCHHHHHHHHhhccCCCh
Q 006672 332 AIGTALVDMYAK--CGNIEAASLVFGETKEKDL 362 (636)
Q Consensus 332 ~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~ 362 (636)
.....|+++|-. ...++.|..-|+.+.+-|.
T Consensus 236 ~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 236 KFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 344555555533 3345666666666655443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0022 Score=57.50 Aligned_cols=97 Identities=15% Similarity=0.142 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHH
Q 006672 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLL 477 (636)
Q Consensus 399 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l 477 (636)
.+..+...+...|++++|...|++..+...-.++ ...+..++.++.+.|++++|...++++. +..|.++..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al----~~~p~~~~~~~~l 112 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQAL----ELNPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCcccHHHHHHH
Confidence 4455555566666666666666666531111111 3456666677777777777777666444 4567677777777
Q ss_pred HHHHHHcCC--------------hhHHHHHHHHHHh
Q 006672 478 SNIYAAEGR--------------WKDVARVRTLMQR 499 (636)
Q Consensus 478 ~~~~~~~g~--------------~~~A~~~~~~m~~ 499 (636)
+.+|...|+ +++|.+++++..+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 777766665 4556666666555
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0012 Score=66.76 Aligned_cols=91 Identities=8% Similarity=0.159 Sum_probs=79.7
Q ss_pred HHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 006672 404 LTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYA 482 (636)
Q Consensus 404 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~ 482 (636)
...+...|++++|+++|+++++ ..| +...|..+..+|.+.|++++|+..++++ ++++|.++..|..++.+|.
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~A----l~l~P~~~~a~~~lg~~~~ 81 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKA----IELDPSLAKAYLRKGTACM 81 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHhCcCCHHHHHHHHHHHH
Confidence 3456678999999999999985 334 5778899999999999999999998855 4679999999999999999
Q ss_pred HcCChhHHHHHHHHHHhCC
Q 006672 483 AEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 483 ~~g~~~~A~~~~~~m~~~g 501 (636)
..|++++|...+++..+.+
T Consensus 82 ~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 82 KLEEYQTAKAALEKGASLA 100 (356)
T ss_pred HhCCHHHHHHHHHHHHHhC
Confidence 9999999999999998754
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0021 Score=50.37 Aligned_cols=92 Identities=14% Similarity=0.212 Sum_probs=66.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHH
Q 006672 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443 (636)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~ 443 (636)
|..+...+...|++++|+..+++..+ ..|+ ...+..+...+...|++++|.+.++.... . .+.+...+..++..+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE-L-DPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C-CCcchhHHHHHHHHH
Confidence 55566777778888888888888877 3444 35666677777788888888888887764 1 233446777788888
Q ss_pred HhcCCchHHHHHHHHHH
Q 006672 444 SRVGQDSQGYQNSQNSF 460 (636)
Q Consensus 444 ~~~g~~~~A~~~~~~~~ 460 (636)
...|+.++|...++++.
T Consensus 79 ~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 79 YKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHhHHHHHHHHHHHH
Confidence 88888888888877543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00074 Score=63.21 Aligned_cols=88 Identities=13% Similarity=0.180 Sum_probs=77.4
Q ss_pred HHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHc
Q 006672 406 ACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAE 484 (636)
Q Consensus 406 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~ 484 (636)
-..+.+++++|+..|.+.++ +.| ++..|..-..+|.+.|.++.|++-.+ .++.++|....+|..|+.+|...
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce----~Al~iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCE----SALSIDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHH----HHHhcChHHHHHHHHHHHHHHcc
Confidence 35678999999999999985 555 57788889999999999999998766 55689999999999999999999
Q ss_pred CChhHHHHHHHHHHhC
Q 006672 485 GRWKDVARVRTLMQRR 500 (636)
Q Consensus 485 g~~~~A~~~~~~m~~~ 500 (636)
|++++|++.|++..+.
T Consensus 163 gk~~~A~~aykKaLel 178 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALEL 178 (304)
T ss_pred CcHHHHHHHHHhhhcc
Confidence 9999999999988773
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0066 Score=64.15 Aligned_cols=136 Identities=14% Similarity=0.063 Sum_probs=91.5
Q ss_pred CChhcHHHHHHHHHHc-----CChHHHHHHHHHHhHcCCCCCH-HHHHHHHHHHHhc--------CcHHHHHHHHHHhHh
Q 006672 360 KDLLTWTAMIWGLAIH-----GRYEQAIQYFKKMMYSGTEPDG-TVFLAILTACWYS--------GQVKLALNFFDSMRF 425 (636)
Q Consensus 360 ~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~--------g~~~~a~~~~~~m~~ 425 (636)
.|...|...+.+.... ++...|+.+|++..+ ..|+. ..+..+..++... .+...+.+..++...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4666777777664332 236688888998888 77774 3444443333221 123344444444332
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 006672 426 DYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502 (636)
Q Consensus 426 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 502 (636)
......++..|..+.-.....|++++|...++++. +++| +...|..++.+|...|+.++|.+.+++....+.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl----~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAI----DLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 11233456778777777777899999999888654 6788 678999999999999999999999999887553
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.066 Score=57.70 Aligned_cols=123 Identities=14% Similarity=0.205 Sum_probs=69.2
Q ss_pred hcCCHHHHHHHHhhCCCCCh-hhHHHHHHH--HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHH
Q 006672 242 RKGDLKKAGELFEQMPEKGV-VSWTAMING--FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318 (636)
Q Consensus 242 ~~g~~~~A~~~~~~~~~~~~-~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 318 (636)
..+++..|.....++..+.+ ..|...+.+ ..+.|+.++|..+++.....+.. |..|...+-..|.+.++.+++..+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHH
Confidence 34566666666655543221 122223332 35667777777666665554433 666777676777777777777777
Q ss_pred HHHHHHcCCCCchhHHHHHhhHHhhcCCHH----HHHHHHhhccCCChhcHHH
Q 006672 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIE----AASLVFGETKEKDLLTWTA 367 (636)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~----~A~~~~~~~~~~~~~~~~~ 367 (636)
|+.+.+.. |+......+..+|.+.+.+. .|.+++...++..-..|+.
T Consensus 100 Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV 150 (932)
T KOG2053|consen 100 YERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV 150 (932)
T ss_pred HHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH
Confidence 77766543 34555555666666655543 3555555554444444544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0049 Score=60.17 Aligned_cols=90 Identities=9% Similarity=0.088 Sum_probs=61.6
Q ss_pred HhcCcHHHHHHHHHHhHh--hcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcC
Q 006672 408 WYSGQVKLALNFFDSMRF--DYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEG 485 (636)
Q Consensus 408 ~~~g~~~~a~~~~~~m~~--~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g 485 (636)
.+.|.+..|.+.|.+.+. ...+.|+...|.....+..+.|++.+|+.--+++. +++|.-...|..-++++...+
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al----~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL----KIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh----hcCHHHHHHHHHHHHHHHHHH
Confidence 356677777777766652 11234446667777777778888888887766443 667766667777777788888
Q ss_pred ChhHHHHHHHHHHhCC
Q 006672 486 RWKDVARVRTLMQRRS 501 (636)
Q Consensus 486 ~~~~A~~~~~~m~~~g 501 (636)
+|++|.+-+++..+..
T Consensus 336 ~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 8888888888776643
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0047 Score=52.83 Aligned_cols=88 Identities=10% Similarity=0.021 Sum_probs=52.7
Q ss_pred HHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcC
Q 006672 336 ALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSG 411 (636)
Q Consensus 336 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g 411 (636)
.+...+...|++++|.++|+-+.. .+..-|-.|..++...|++++|+..|..... +.|| +..+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHcC
Confidence 344445556666666666665443 3445566666666666666666666666666 3344 445555556666666
Q ss_pred cHHHHHHHHHHhHh
Q 006672 412 QVKLALNFFDSMRF 425 (636)
Q Consensus 412 ~~~~a~~~~~~m~~ 425 (636)
+.+.|++.|+..+.
T Consensus 118 ~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 118 NVCYAIKALKAVVR 131 (157)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666666654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0067 Score=54.37 Aligned_cols=117 Identities=13% Similarity=0.268 Sum_probs=58.6
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHH
Q 006672 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD--GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVV 440 (636)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~ 440 (636)
.+..+...+...|++++|+..|++..+....++ ...+..+...+.+.|++++|...+++..+ ..| +...+..++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg 113 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHHHH
Confidence 445555555556666666666666655322221 23455555556666666666666666553 222 244444555
Q ss_pred HHHHhcCC-------chHHHHHHHHHH---HHHhccCCCCchhHHHHHHHHHHcCC
Q 006672 441 NLLSRVGQ-------DSQGYQNSQNSF---TKLLQLKPKHPSSYVLLSNIYAAEGR 486 (636)
Q Consensus 441 ~~~~~~g~-------~~~A~~~~~~~~---~~~~~l~p~~~~~~~~l~~~~~~~g~ 486 (636)
.+|...|+ .++|...++++. ++.++++|++ |..++..+...|+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 55554443 333333333222 2344556654 5555555555553
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.067 Score=46.61 Aligned_cols=135 Identities=13% Similarity=0.063 Sum_probs=62.7
Q ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHH
Q 006672 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGL 372 (636)
Q Consensus 293 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 372 (636)
.|+...-..+..+....|+..+|...|++...--+..|..+...+.++....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~---------------------------- 137 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAI---------------------------- 137 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhh----------------------------
Confidence 4444444445555555555555555555554333344444444444444444
Q ss_pred HHcCChHHHHHHHHHHhHcCCCCC---HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCc
Q 006672 373 AIHGRYEQAIQYFKKMMYSGTEPD---GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQD 449 (636)
Q Consensus 373 ~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~ 449 (636)
+++..|...++++.+.+ |+ +.+...+..++...|.+.+|+.-|+.... .-|++..-......+.++|+.
T Consensus 138 ---~~~A~a~~tLe~l~e~~--pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~---~ypg~~ar~~Y~e~La~qgr~ 209 (251)
T COG4700 138 ---QEFAAAQQTLEDLMEYN--PAFRSPDGHLLFARTLAAQGKYADAESAFEVAIS---YYPGPQARIYYAEMLAKQGRL 209 (251)
T ss_pred ---ccHHHHHHHHHHHhhcC--CccCCCCchHHHHHHHHhcCCchhHHHHHHHHHH---hCCCHHHHHHHHHHHHHhcch
Confidence 44555555555444421 21 11222333444555555555555555543 234444444444455555555
Q ss_pred hHHHHHHHHHHHHH
Q 006672 450 SQGYQNSQNSFTKL 463 (636)
Q Consensus 450 ~~A~~~~~~~~~~~ 463 (636)
++|..-+....+.+
T Consensus 210 ~ea~aq~~~v~d~~ 223 (251)
T COG4700 210 REANAQYVAVVDTA 223 (251)
T ss_pred hHHHHHHHHHHHHH
Confidence 55554444444333
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0032 Score=56.23 Aligned_cols=116 Identities=7% Similarity=-0.018 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHH
Q 006672 378 YEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQN 455 (636)
Q Consensus 378 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 455 (636)
+..+...+..+.+..-... ...+..+...+...|++++|...|++......-.+ ...+|..+..+|...|++++|++.
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3344444444432212222 34566777778889999999999999975221111 245788999999999999999999
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHH-------HcCChhHHHHHHHHH
Q 006672 456 SQNSFTKLLQLKPKHPSSYVLLSNIYA-------AEGRWKDVARVRTLM 497 (636)
Q Consensus 456 ~~~~~~~~~~l~p~~~~~~~~l~~~~~-------~~g~~~~A~~~~~~m 497 (636)
++++. +++|.....+..++.+|. ..|++++|...+++.
T Consensus 95 ~~~Al----~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 95 YFQAL----ERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHH----HhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 98665 568888888999999988 778887666655544
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00075 Score=52.17 Aligned_cols=80 Identities=18% Similarity=0.436 Sum_probs=54.4
Q ss_pred cCChHHHHHHHHHHhHcCCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHH
Q 006672 375 HGRYEQAIQYFKKMMYSGTE-PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQG 452 (636)
Q Consensus 375 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 452 (636)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. .+ ..| +....-.++.+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 57888888888888874321 2344555577888888888888888877 21 222 234444557888888888888
Q ss_pred HHHHHH
Q 006672 453 YQNSQN 458 (636)
Q Consensus 453 ~~~~~~ 458 (636)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 888764
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.034 Score=51.13 Aligned_cols=134 Identities=10% Similarity=0.063 Sum_probs=84.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHc-----CCCCchhHHHHH
Q 006672 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN-----DFGLKGAIGTAL 337 (636)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l 337 (636)
.-+.++..+.-.|.+.-.+.++.+..+...+.++.....+.+.-.+.|+.+.|...++.+.+. ++....-+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 344566666667777777777777777655556666667777777777877777777766553 223333334444
Q ss_pred hhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHH
Q 006672 338 VDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398 (636)
Q Consensus 338 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 398 (636)
...|.-.+++.+|...|+++.. .|++.-|.-.-+..-.|+..+|++..+.|.+ ..|.+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~ 320 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHY 320 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccc
Confidence 4456666777777777777665 3444445444444456777777777777777 444443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0028 Score=64.21 Aligned_cols=57 Identities=21% Similarity=0.126 Sum_probs=22.6
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhC
Q 006672 134 FVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190 (636)
Q Consensus 134 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 190 (636)
++++.|...|..+.+..++..-...|+-||.+++|.||+.+.+.|++..|.++...|
T Consensus 108 a~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~ 164 (429)
T PF10037_consen 108 ALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEM 164 (429)
T ss_pred HHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHH
Confidence 333333333333333333333333333344444444444444444444444333333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.004 Score=63.04 Aligned_cols=120 Identities=8% Similarity=0.017 Sum_probs=99.9
Q ss_pred CCCCChhHHHHHHHHhhcCCChHHHHHHhccCC-CC-----CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCccc
Q 006672 58 NLFASSRITTQLISSASLHKSIDYALSIFDHFT-PK-----NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131 (636)
Q Consensus 58 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~-~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 131 (636)
+...+......+++......+++.+..++-+.. .| -..+..++|+.|...|..+.++.++..=...|+-||.+|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 445566777788888888888888888876654 22 234567999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 006672 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL 177 (636)
Q Consensus 132 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 177 (636)
++.|+..+.+.|++..|.++...|...+.-.+..++..-+.++.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999999888777777776666666665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0022 Score=62.24 Aligned_cols=136 Identities=13% Similarity=0.136 Sum_probs=64.8
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHh----HcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHh---hcCC-CCChh
Q 006672 364 TWTAMIWGLAIHGRYEQAIQYFKKMM----YSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRF---DYFI-EPSVK 434 (636)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~---~~~~-~p~~~ 434 (636)
.|..|...|.-.|+++.|+..-+.=+ +-|-+.. ...+..+..++.-.|+++.|.+.|+.... +.|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34444444445555555554433221 1121111 23455555555555566666555554321 0111 11123
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCC--chhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 435 HHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH--PSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
..-+|.+.|.-...++.|+.++.+-..-+-+++... ..++.+|+++|...|..+.|+.+.+.-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 333455555555555666666555554444443331 23555666666666666666666655554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0017 Score=49.27 Aligned_cols=67 Identities=10% Similarity=0.136 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCC---chhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 433 VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH---PSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
...|+.+...|.+.|++++|++.++++.+..-...+++ ..++..++.+|...|++++|.+++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45678888888888999999998888877632333322 45788899999999999999999987654
|
... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00034 Score=43.00 Aligned_cols=31 Identities=26% Similarity=0.629 Sum_probs=28.7
Q ss_pred HHHhccCCCCchhHHHHHHHHHHcCChhHHH
Q 006672 461 TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVA 491 (636)
Q Consensus 461 ~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~ 491 (636)
++.++++|+|+.+|..|+.+|...|++++|+
T Consensus 3 ~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4677899999999999999999999999986
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.038 Score=54.00 Aligned_cols=98 Identities=12% Similarity=0.086 Sum_probs=59.2
Q ss_pred HHHHHHhc-CcHHHHHHHHHHhHhhcCCCCC----hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCC--Cc-hhH
Q 006672 403 ILTACWYS-GQVKLALNFFDSMRFDYFIEPS----VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPK--HP-SSY 474 (636)
Q Consensus 403 ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~--~~-~~~ 474 (636)
+...|... |++++|.++|++...-+..... ...+..++.++.+.|++++|.++|++.....++..-. +. ..+
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 34455555 7777777777766543222222 3455667788888899999999988776543322111 11 234
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 475 VLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 475 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
...+-++...|+...|.+.+++....
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45556777789999999999888764
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.015 Score=47.98 Aligned_cols=107 Identities=15% Similarity=0.122 Sum_probs=67.6
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCC--CchhHHHHHhhHH
Q 006672 266 AMINGFSQNGEAEKALAMFFQMLDAGVRAN--DFTVVSALSACAKVGALEAGVRVHNYISCNDFG--LKGAIGTALVDMY 341 (636)
Q Consensus 266 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~ 341 (636)
.+..++-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|..+++........ .+..+...+.-++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 345677788899999999998888876654 235556777788888888888888877754211 1223333344456
Q ss_pred hhcCCHHHHHHHHhhccCCChhcHHHHHHHH
Q 006672 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGL 372 (636)
Q Consensus 342 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 372 (636)
...|+.++|.+.+-...-++...|.--|..|
T Consensus 86 ~~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777766554433333333333333
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0045 Score=49.08 Aligned_cols=80 Identities=16% Similarity=0.031 Sum_probs=56.7
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHHCCC-CCCcccHHHHHHHHHccCC--------hHHHHHHHHHHHHhCCCCChhH
Q 006672 96 IFNVLIRGLAENSHFQSCISHFVFMLRLSV-RPNRLTYPFVSKSVASLSL--------LSLGRGLHCLIVKSGVEYDAFV 166 (636)
Q Consensus 96 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~~--------~~~a~~~~~~~~~~g~~~~~~~ 166 (636)
+-...|..+...+++.....+|+.+.+.|+ .|+..+|+.+|.+.++..- +.....+++.|+..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344556667777999999999999999998 8999999999988765421 2334556666666666666666
Q ss_pred HHHHHHHHH
Q 006672 167 RVHLADMYV 175 (636)
Q Consensus 167 ~~~li~~~~ 175 (636)
|+.++..+.
T Consensus 107 Ynivl~~Ll 115 (120)
T PF08579_consen 107 YNIVLGSLL 115 (120)
T ss_pred HHHHHHHHH
Confidence 666665554
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.36 Score=48.11 Aligned_cols=132 Identities=14% Similarity=0.140 Sum_probs=89.6
Q ss_pred hhcHHHHHHHHHHcCChHHHHHHHHHHhHcC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHH-HHH
Q 006672 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG-TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH-TVV 439 (636)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~~l 439 (636)
...|...+..-.+....+.|..+|-+..+.| +.++...+++++.-+ ..|+...|.++|+.-... -||...| .-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~---f~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLK---FPDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHh---CCCchHHHHHH
Confidence 3466777777777777888888888888877 455666777776544 457777888888766542 2443333 455
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 440 VNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
++.+.+.++-+.|..+|+...+++-+. .-..+|..++.--..-|+...|..+-++|.+
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~--q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKT--QLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHh--hhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 667778888888888888666654333 2235777777777777877777766666655
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.011 Score=57.42 Aligned_cols=126 Identities=13% Similarity=0.072 Sum_probs=66.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHH
Q 006672 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA-CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341 (636)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 341 (636)
+|..++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. ++.+...+...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555555555555666666666665432 1122222222222 12234455566666666654 355566666666666
Q ss_pred hhcCCHHHHHHHHhhccC--C----ChhcHHHHHHHHHHcCChHHHHHHHHHHhH
Q 006672 342 AKCGNIEAASLVFGETKE--K----DLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (636)
Q Consensus 342 ~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 390 (636)
.+.|+.+.|+.+|++... + --..|...+.-=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666554 1 223566666666666666666666666665
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.001 Score=48.94 Aligned_cols=51 Identities=16% Similarity=0.415 Sum_probs=31.9
Q ss_pred hcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 445 RVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 445 ~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
..|++++|.+.++++. +.+|+++.++..++.+|.+.|++++|.++++++..
T Consensus 3 ~~~~~~~A~~~~~~~l----~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKAL----QRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHH----HHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHH----HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566666666666443 44666666666667777777777777666665554
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.026 Score=59.68 Aligned_cols=88 Identities=8% Similarity=0.063 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhHcC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHH
Q 006672 379 EQAIQYFKKMMYSG-TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQ 457 (636)
Q Consensus 379 ~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (636)
..+.+..++..... ...+...+..+.-.....|++++|...++++.. +.|+...|..++..+...|+.++|.+.++
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~ 477 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYS 477 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444444443321 222345666665556667999999999999885 55788899999999999999999999988
Q ss_pred HHHHHHhccCCCCchh
Q 006672 458 NSFTKLLQLKPKHPSS 473 (636)
Q Consensus 458 ~~~~~~~~l~p~~~~~ 473 (636)
++ +.++|.++..
T Consensus 478 ~A----~~L~P~~pt~ 489 (517)
T PRK10153 478 TA----FNLRPGENTL 489 (517)
T ss_pred HH----HhcCCCCchH
Confidence 55 4788987753
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.011 Score=57.56 Aligned_cols=127 Identities=11% Similarity=0.039 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhh-cCCHHHHHHHHhhccC---CChhcHHHHHHHH
Q 006672 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK-CGNIEAASLVFGETKE---KDLLTWTAMIWGL 372 (636)
Q Consensus 297 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 372 (636)
.+|..++..+.+.+..+.|+.+|..+.+.+ ..+..+|.....+-.+ .++.+.|.++|+...+ .+...|...+.-+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456777777777777888888888887543 3344555555555333 3455558888877765 4666777777777
Q ss_pred HHcCChHHHHHHHHHHhHcCCCCCH---HHHHHHHHHHHhcCcHHHHHHHHHHhHh
Q 006672 373 AIHGRYEQAIQYFKKMMYSGTEPDG---TVFLAILTACWYSGQVKLALNFFDSMRF 425 (636)
Q Consensus 373 ~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 425 (636)
...|+.+.|..+|++.... +.++. ..|...+.-=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7778888888888887764 33222 3677777766677777777777777764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.002 Score=48.19 Aligned_cols=57 Identities=11% Similarity=0.180 Sum_probs=46.1
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 441 NLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
..|.+.+++++|.+.++++. +++|.++..|...+.+|...|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l----~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERAL----ELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHH----HhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 46778888888888877544 6688888888888888888888888888888888754
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.048 Score=47.02 Aligned_cols=90 Identities=10% Similarity=0.014 Sum_probs=75.8
Q ss_pred HHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHH
Q 006672 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAA 483 (636)
Q Consensus 404 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~ 483 (636)
..-+...|++++|..+|.-+.. ++ .-+..-+..|..++-..+++++|...|..+. .++++||.++...+.+|..
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~-~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~----~l~~~dp~p~f~agqC~l~ 117 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCI-YD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAF----TLLKNDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH-hC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcccCCCCccchHHHHHHH
Confidence 3345689999999999998874 32 3356677888899999999999999998665 5678899999999999999
Q ss_pred cCChhHHHHHHHHHHh
Q 006672 484 EGRWKDVARVRTLMQR 499 (636)
Q Consensus 484 ~g~~~~A~~~~~~m~~ 499 (636)
.|+.+.|...|+...+
T Consensus 118 l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 118 MRKAAKARQCFELVNE 133 (165)
T ss_pred hCCHHHHHHHHHHHHh
Confidence 9999999999998876
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0077 Score=47.79 Aligned_cols=82 Identities=15% Similarity=0.058 Sum_probs=67.6
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CcHHHHHHHHHHHHcCCCCchh
Q 006672 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGV-RANDFTVVSALSACAKVG--------ALEAGVRVHNYISCNDFGLKGA 332 (636)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~ 332 (636)
.|-...|..+...+++.....+|+.+.+.|+ .|+..+|+.++.+.++.. ++-....+|+.|+..++.|+..
T Consensus 26 ~t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~e 105 (120)
T PF08579_consen 26 ETQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHH
Confidence 3455667777788999999999999999999 999999999999887643 2445677888899888999999
Q ss_pred HHHHHhhHHhh
Q 006672 333 IGTALVDMYAK 343 (636)
Q Consensus 333 ~~~~li~~~~~ 343 (636)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99988877654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.43 Score=47.77 Aligned_cols=118 Identities=19% Similarity=0.229 Sum_probs=74.3
Q ss_pred HHHcCC-hHHHHHHHHHHhHcCCCCCHH-----HHHHHHHHHHhc---CcHHHHHHHHHHhHhhcCCCCC----hhHHHH
Q 006672 372 LAIHGR-YEQAIQYFKKMMYSGTEPDGT-----VFLAILTACWYS---GQVKLALNFFDSMRFDYFIEPS----VKHHTV 438 (636)
Q Consensus 372 ~~~~g~-~~~A~~~~~~m~~~g~~p~~~-----t~~~ll~a~~~~---g~~~~a~~~~~~m~~~~~~~p~----~~~~~~ 438 (636)
+-+.|+ -++|+.+++...+ +.|... ++..+=.+|.++ ....+-..+-+-+. +.|+.|- .+.-|+
T Consensus 389 lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~-e~gl~~i~i~e~eian~ 465 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFIT-EVGLTPITISEEEIANF 465 (549)
T ss_pred HHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-hcCCCcccccHHHHHHH
Confidence 334444 6788888888777 555432 233333444432 23334444433333 5777764 455667
Q ss_pred HHHH--HHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHH
Q 006672 439 VVNL--LSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLM 497 (636)
Q Consensus 439 l~~~--~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 497 (636)
|.|+ +...|++.++.-.-. -+.++.| ++.+|-.++-+.....++++|..++..+
T Consensus 466 LaDAEyLysqgey~kc~~ys~----WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 466 LADAEYLYSQGEYHKCYLYSS----WLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHhcccHHHHHHHHH----HHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 7665 557888888776543 3446778 7888888888888888888888888865
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.011 Score=55.94 Aligned_cols=105 Identities=14% Similarity=0.071 Sum_probs=79.7
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcC---CchHHHHHHHHHHHHHhccCCCCch
Q 006672 396 DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG---QDSQGYQNSQNSFTKLLQLKPKHPS 472 (636)
Q Consensus 396 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~l~p~~~~ 472 (636)
|...|..|..+|...|+.+.|..-|....+- -.++++.+..+..++..+. ...++.++++ +.++++|.|..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~----~al~~D~~~ir 228 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLR----QALALDPANIR 228 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH----HHHhcCCccHH
Confidence 3568888888888888888888888887652 2345667777776655432 2345666665 55688999999
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCC
Q 006672 473 SYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDP 506 (636)
Q Consensus 473 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 506 (636)
+...|+..+...|++.+|...|+.|.+.....+|
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999999999999987654433
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.12 Score=45.08 Aligned_cols=133 Identities=14% Similarity=0.179 Sum_probs=101.6
Q ss_pred CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHH
Q 006672 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439 (636)
Q Consensus 360 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 439 (636)
|++.---.|..++...|++.+|...|++...--..-|......+.++....++...|...++.+.+...-.-++...-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 44445556788889999999999999998875455567788899999999999999999999987522112235566778
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHH
Q 006672 440 VNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLM 497 (636)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 497 (636)
...|.-.|+.++|+.-|+.++.. -| ++..-......+.++|+.++|..-+...
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~----yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY----YP-GPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh----CC-CHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 88999999999999999977644 34 5556666677889999888775544443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.046 Score=45.08 Aligned_cols=93 Identities=13% Similarity=0.250 Sum_probs=68.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHhHcCCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHH
Q 006672 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPD--GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLS 444 (636)
Q Consensus 368 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~ 444 (636)
+..++-..|+.++|+.+|++....|+... ...+..+.+++...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45567778999999999999999887665 34677788889999999999999998876432111 2233334456778
Q ss_pred hcCCchHHHHHHHHHH
Q 006672 445 RVGQDSQGYQNSQNSF 460 (636)
Q Consensus 445 ~~g~~~~A~~~~~~~~ 460 (636)
..|+.++|.+.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 8899999988876443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.65 Score=48.89 Aligned_cols=251 Identities=10% Similarity=0.101 Sum_probs=140.8
Q ss_pred hHHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHH-CCCCCCc--ccHHH--H--HHHHHccCChHHHHHH
Q 006672 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR-LSVRPNR--LTYPF--V--SKSVASLSLLSLGRGL 151 (636)
Q Consensus 79 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~--~t~~~--l--l~~~~~~~~~~~a~~~ 151 (636)
+++|.+..+. .|.+..|..+.....+.-.++-|...|-+... .|++.-. .|..+ + ...-+--|.+++|+++
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~ 756 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKL 756 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhh
Confidence 4566665554 45667788887777776677777777766543 2322100 00000 0 0111234778888887
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC-CCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCh
Q 006672 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK-NKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV 230 (636)
Q Consensus 152 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 230 (636)
+-.+-+.. ..|.++.+.|++-...++++.--.. .-+.-..+|+.+...++....|++|.++|..-..
T Consensus 757 yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--- 824 (1189)
T KOG2041|consen 757 YLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--- 824 (1189)
T ss_pred hhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---
Confidence 76665443 2466777888888777777542210 0012245788888888888888888888765431
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006672 231 ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310 (636)
Q Consensus 231 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 310 (636)
....+.+|.+..++++-+.+-..+++. ....-.|...+...|.-++|.+.|-+- + .|. ..+..|....
T Consensus 825 --~e~~~ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~pk-----aAv~tCv~Ln 892 (1189)
T KOG2041|consen 825 --TENQIECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLRR---S-LPK-----AAVHTCVELN 892 (1189)
T ss_pred --hHhHHHHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHhc---c-CcH-----HHHHHHHHHH
Confidence 123455555556666665555555543 344455667777777777777665322 1 121 2345566666
Q ss_pred CcHHHHHHHHHHHHcCCCCchhHH--------------HHHhhHHhhcCCHHHHHHHHhhccC
Q 006672 311 ALEAGVRVHNYISCNDFGLKGAIG--------------TALVDMYAKCGNIEAASLVFGETKE 359 (636)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~~~~~~~--------------~~li~~~~~~g~~~~A~~~~~~~~~ 359 (636)
++.+|.++-+... -|.+.+. .--|..+.+.|+.-+|.+++.+|.+
T Consensus 893 QW~~avelaq~~~----l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 893 QWGEAVELAQRFQ----LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHHhcc----chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 6666655543221 1111110 1124556677777677777766664
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.51 Score=47.27 Aligned_cols=135 Identities=10% Similarity=0.050 Sum_probs=89.5
Q ss_pred hhcCCChHHHHHHhccCCC---CCc------chHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHH--Hc
Q 006672 73 ASLHKSIDYALSIFDHFTP---KNL------HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV--AS 141 (636)
Q Consensus 73 ~~~~g~~~~A~~~f~~~~~---~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~ 141 (636)
+-+.+++.+|.++|.++-. .+. +.-+.+|++|..+ +.+.....+....+ ..| ...|-.+..++ -+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~--~~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQ--QFG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHH--hcC-CchHHHHHHHHHHHH
Confidence 4578999999999987752 222 2345677777655 34444444444444 234 55566776664 47
Q ss_pred cCChHHHHHHHHHHHHh--CCCCC------------hhHHHHHHHHHHhcCChHHHHHHHhhCCCC----CCCCChhhHH
Q 006672 142 LSLLSLGRGLHCLIVKS--GVEYD------------AFVRVHLADMYVQLGKTRGAFKVFDETPEK----NKSESVLLWN 203 (636)
Q Consensus 142 ~~~~~~a~~~~~~~~~~--g~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~ 203 (636)
.+.+..|.+.+..-... +..|. -..-+..++.+...|++.+++.++++|... ...-++.+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 78899999988877765 33331 122366788888999999999998877543 3347888999
Q ss_pred HHHHHHHh
Q 006672 204 VLINGCSK 211 (636)
Q Consensus 204 ~li~~~~~ 211 (636)
.++-.+.+
T Consensus 172 ~~vlmlsr 179 (549)
T PF07079_consen 172 RAVLMLSR 179 (549)
T ss_pred HHHHHHhH
Confidence 86655544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0037 Score=45.44 Aligned_cols=61 Identities=13% Similarity=0.197 Sum_probs=37.1
Q ss_pred HHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCC
Q 006672 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH 470 (636)
Q Consensus 404 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~ 470 (636)
...+...|++++|...|+.+.+. .+-+...+..++.++.+.|++++|...++++. +.+|+|
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~----~~~P~~ 64 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERAL----ELDPDN 64 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH----HHSTT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHCcCC
Confidence 34556677777777777777641 12246666677777777777777777776544 446654
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.033 Score=50.13 Aligned_cols=115 Identities=17% Similarity=0.099 Sum_probs=78.2
Q ss_pred CCCHHHHHHHHHHHHhc-----CCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHH
Q 006672 293 RANDFTVVSALSACAKV-----GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367 (636)
Q Consensus 293 ~p~~~t~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 367 (636)
..|..+|..++..+.+. |..+-....+..|.+.|+..|..+|+.|++.+=+ |.+- -.+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv----------------p~n 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV----------------PRN 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc----------------ccc
Confidence 45677777777777543 5667677778888889999999999999987754 3221 111
Q ss_pred HHHHHH--HcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcH-HHHHHHHHHhH
Q 006672 368 MIWGLA--IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV-KLALNFFDSMR 424 (636)
Q Consensus 368 li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~-~~a~~~~~~m~ 424 (636)
++.+-. ...+.+-|++++++|...|+-||..|+..+++.+.+.+.. .+..++.--|.
T Consensus 107 ~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 107 FFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred HHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 111111 1235678999999999999999999999999998766643 33344433343
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.45 Score=46.67 Aligned_cols=283 Identities=17% Similarity=0.191 Sum_probs=164.4
Q ss_pred cCChHHHHHHHhhCC---CCChHHHHHHHHH--HHhcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCChHHHHHH
Q 006672 212 IGYLRKAVELFGMMP---KKNVASWVSLIDG--FMRKGDLKKAGELFEQMPEKG---VVSWTAMINGFSQNGEAEKALAM 283 (636)
Q Consensus 212 ~g~~~~A~~~~~~m~---~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l 283 (636)
.|+-..|.++-.+.. ..|......|+.+ -.-.|++++|.+-|+.|.... ..-...|.-.-.+.|..+.|..+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~y 176 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHY 176 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHH
Confidence 345555555443332 2344333344433 334689999999999987532 11222233334567888888877
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcC-CCCchhHH--HHHhhHHh---hcCCHHHHHHHHhhc
Q 006672 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND-FGLKGAIG--TALVDMYA---KCGNIEAASLVFGET 357 (636)
Q Consensus 284 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~--~~li~~~~---~~g~~~~A~~~~~~~ 357 (636)
-.+.-..- +--.......+...+..|+++.|+++.+.-.... +.++..-- ..|+.+-. -.-+...|...-.+.
T Consensus 177 Ae~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a 255 (531)
T COG3898 177 AERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEA 255 (531)
T ss_pred HHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 77766542 2234566778888888999999999988766532 23332211 11221110 112344444444433
Q ss_pred cC--CChhcH-HHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-h
Q 006672 358 KE--KDLLTW-TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-V 433 (636)
Q Consensus 358 ~~--~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~ 433 (636)
.+ ||.+.- -.-..++.+.|+..++-.+++.+-+....|+ .+... ...+.|+ .+..-+++..+-..++|+ .
T Consensus 256 ~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~lY--~~ar~gd--ta~dRlkRa~~L~slk~nna 329 (531)
T COG3898 256 NKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IALLY--VRARSGD--TALDRLKRAKKLESLKPNNA 329 (531)
T ss_pred hhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHHHH--HHhcCCC--cHHHHHHHHHHHHhcCccch
Confidence 33 454432 2334568888999999999999988544444 22211 2234443 344444444333345565 5
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHc-CChhHHHHHHHHHHhCCCccCCee
Q 006672 434 KHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAE-GRWKDVARVRTLMQRRSIKKDPGW 508 (636)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~g~~~~~~~ 508 (636)
+....+..+-...|++..|..--+. .....| -.+.|..|.++-... |+-.++...+-+..+ -+.+|.+
T Consensus 330 es~~~va~aAlda~e~~~ARa~Aea----a~r~~p-res~~lLlAdIeeAetGDqg~vR~wlAqav~--APrdPaW 398 (531)
T COG3898 330 ESSLAVAEAALDAGEFSAARAKAEA----AAREAP-RESAYLLLADIEEAETGDQGKVRQWLAQAVK--APRDPAW 398 (531)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHH----HhhhCc-hhhHHHHHHHHHhhccCchHHHHHHHHHHhc--CCCCCcc
Confidence 6666777777788888888766553 335677 457888888887665 998888888877665 3445543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.084 Score=50.07 Aligned_cols=55 Identities=11% Similarity=0.019 Sum_probs=28.3
Q ss_pred HHHHHHcCChHHHHHHHHHHhHc--CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHh
Q 006672 369 IWGLAIHGRYEQAIQYFKKMMYS--GTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423 (636)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 423 (636)
..-|.+.|.+..|+.-++.+++. +..........+..+|...|..++|.+....+
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 34455566666666666666552 11112234445555666666666665555433
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0031 Score=46.32 Aligned_cols=46 Identities=9% Similarity=0.096 Sum_probs=22.3
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHH
Q 006672 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQ 457 (636)
Q Consensus 410 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (636)
.|++++|.++|+.+... .+-+...+..++.+|.+.|++++|.++++
T Consensus 4 ~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~ 49 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLE 49 (68)
T ss_dssp TTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45555555555555431 11234444455555555555555555554
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.04 Score=50.69 Aligned_cols=134 Identities=11% Similarity=0.077 Sum_probs=102.3
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcC----CCCChhHHHHH
Q 006672 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF----IEPSVKHHTVV 439 (636)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----~~p~~~~~~~l 439 (636)
.-+.++..+.-+|.+.-.+.++.+.++...+.++.....+.+.-.+.|+.+.|..+|+...+..+ +.-.......+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34566677777788888899999999866566677888888888899999999999997765332 22223333344
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 440 VNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
...|.-++++.+|...+. +.++.+|.++...+.-+-+..-.|+..+|.+..+.|.++.
T Consensus 259 a~i~lg~nn~a~a~r~~~----~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFT----EILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhheecccchHHHHHHHh----hccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 455666778888888776 4557799999988888888888899999999999998854
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.85 Score=48.61 Aligned_cols=108 Identities=18% Similarity=0.151 Sum_probs=82.5
Q ss_pred HHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcH
Q 006672 334 GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413 (636)
Q Consensus 334 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 413 (636)
.+--+.-+..-|+...|.++-.+..-||-..|-.-+.+++..+++++-+++-+.+.. +.-|.-...+|.+.|+.
T Consensus 687 l~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~ 760 (829)
T KOG2280|consen 687 LHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNK 760 (829)
T ss_pred HHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccH
Confidence 344455566678899999999988888988888889999999998887776655432 45566678899999999
Q ss_pred HHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHH
Q 006672 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQ 457 (636)
Q Consensus 414 ~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (636)
++|.+++.+... . . -.+.+|.+.|++.+|.++--
T Consensus 761 ~EA~KYiprv~~---l---~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 761 DEAKKYIPRVGG---L---Q----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHhhhhhccCC---h---H----HHHHHHHHhccHHHHHHHHH
Confidence 999998875531 1 1 47788999999988887643
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.029 Score=50.45 Aligned_cols=97 Identities=22% Similarity=0.266 Sum_probs=69.9
Q ss_pred HHHhhc--cCCChhcHHHHHHHHHHc-----CChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhc--------------
Q 006672 352 LVFGET--KEKDLLTWTAMIWGLAIH-----GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS-------------- 410 (636)
Q Consensus 352 ~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-------------- 410 (636)
..|+.. ..+|-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.||..+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344443 335556666666666543 56666666777777777777777888777765431
Q ss_pred --CcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCc
Q 006672 411 --GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQD 449 (636)
Q Consensus 411 --g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~ 449 (636)
.+-+-|++++++|. .+|+.||.+++..+++.+++.+..
T Consensus 115 yp~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 115 YPRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred CcHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhccccHH
Confidence 34577999999998 599999999999999999887653
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0067 Score=44.65 Aligned_cols=61 Identities=23% Similarity=0.363 Sum_probs=32.4
Q ss_pred hhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcC-cHHHHHHHHHHhH
Q 006672 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSG-QVKLALNFFDSMR 424 (636)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g-~~~~a~~~~~~m~ 424 (636)
...|..+...+...|++++|+..|++.++ +.|+ ...|..+..++...| ++++|++.+++..
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 34455555555555555555555555555 3444 234445555555555 4555555555544
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0066 Score=60.98 Aligned_cols=59 Identities=12% Similarity=0.046 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCCh----hHHHHHHHHHHhcCCchHHHHHHHHH
Q 006672 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV----KHHTVVVNLLSRVGQDSQGYQNSQNS 459 (636)
Q Consensus 398 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~ 459 (636)
..++.+..+|...|++++|...|++..+ +.|+. ..|..+..+|...|++++|++.++++
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3555555555555555555555555553 33442 12555555555555555555555543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.032 Score=53.33 Aligned_cols=94 Identities=18% Similarity=0.186 Sum_probs=58.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCH----HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHH
Q 006672 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG----TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVV 439 (636)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 439 (636)
|...+..+.+.|++++|+..|+.+++ ..|+. ..+..+..+|...|++++|...|+.+.+.+.-.|. ...+-.+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 44444444556777777777777777 44443 35556666777777777777777777654332222 4445555
Q ss_pred HHHHHhcCCchHHHHHHHHHH
Q 006672 440 VNLLSRVGQDSQGYQNSQNSF 460 (636)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~ 460 (636)
+..+...|+.++|.+.+++..
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi 244 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVI 244 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 666667777777777776443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.2 Score=52.02 Aligned_cols=55 Identities=9% Similarity=0.025 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC
Q 006672 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359 (636)
Q Consensus 296 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 359 (636)
..++..+..-+-+...+..|.++|..+-.. .+++++....+++.+|..+-++.++
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 344444444445566677777777765422 3567777888888888888887776
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.9 Score=45.03 Aligned_cols=151 Identities=15% Similarity=0.056 Sum_probs=76.6
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCChh-hHHHHH--HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH---HH-------
Q 006672 238 DGFMRKGDLKKAGELFEQMPEKGVV-SWTAMI--NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA---LS------- 304 (636)
Q Consensus 238 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li--~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l---l~------- 304 (636)
.++.-.|+.++|..+--.+.+.|.. .+...+ .++.-+++.+.|...|++.+.. .|+...-.+. ..
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~ 254 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKE 254 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHh
Confidence 3455566766666665554444322 222222 2344566777777777777654 3443322211 11
Q ss_pred ---HHHhcCCcHHHHHHHHHHHHc---CCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChh-cHHHH--HHHHHHc
Q 006672 305 ---ACAKVGALEAGVRVHNYISCN---DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL-TWTAM--IWGLAIH 375 (636)
Q Consensus 305 ---~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l--i~~~~~~ 375 (636)
-..+.|++..|.+.|.+.+.. +..++...|.....+..+.|+.++|..--++..+-|.. .+..+ ..++...
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLAL 334 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHH
Confidence 123456666666666666542 23344555555555666666666666666555553332 22222 2233344
Q ss_pred CChHHHHHHHHHHhH
Q 006672 376 GRYEQAIQYFKKMMY 390 (636)
Q Consensus 376 g~~~~A~~~~~~m~~ 390 (636)
+++++|.+-|++..+
T Consensus 335 e~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHh
Confidence 556666666655554
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.27 Score=46.67 Aligned_cols=55 Identities=13% Similarity=0.078 Sum_probs=30.3
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 006672 267 MINGFSQNGEAEKALAMFFQMLDA--GVRANDFTVVSALSACAKVGALEAGVRVHNY 321 (636)
Q Consensus 267 li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 321 (636)
+..-|.+.|.+..|..-|+.+.+. +.+........+..++...|..++|......
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 344566666666666666666652 2233334445555566666666655555443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.047 Score=52.25 Aligned_cols=103 Identities=12% Similarity=0.054 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHH
Q 006672 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVL 476 (636)
Q Consensus 398 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~ 476 (636)
..|...+......|++++|...|+.+.+.+.-.+ .+..+--++.+|...|++++|...|+.+.+.- ..+|..+.++..
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-P~s~~~~dAl~k 222 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-PKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcchhHHHHH
Confidence 3455555555667999999999999987442221 13567788999999999999999999766431 223335667777
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 477 LSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 477 l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
++.+|...|++++|.+++++..+.-
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 8999999999999999999988753
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.44 E-value=1.1 Score=44.31 Aligned_cols=106 Identities=17% Similarity=0.202 Sum_probs=84.0
Q ss_pred HHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHH
Q 006672 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414 (636)
Q Consensus 335 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 414 (636)
+.-+.-+...|+...|.++-.+-.-|+-..|-..+.+|+..+++++-.++... +-.++-|..++.+|...|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 33455556678889999998888889999999999999999999887765432 123578888999999999999
Q ss_pred HHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHH
Q 006672 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQ 457 (636)
Q Consensus 415 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (636)
+|..+..++. +..-+.+|.++|++.+|.+.--
T Consensus 255 eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 255 EASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHH
Confidence 9999988743 1456788999999999987754
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.006 Score=40.17 Aligned_cols=42 Identities=17% Similarity=0.338 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHH
Q 006672 434 KHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSN 479 (636)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~ 479 (636)
..+..+...|.+.|++++|++.++++. +.+|+|+..|..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l----~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRAL----ALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH----HHCcCCHHHHHHhhh
Confidence 467788889999999999999988554 668999988887764
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.35 E-value=1.2 Score=43.96 Aligned_cols=104 Identities=17% Similarity=0.107 Sum_probs=53.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh
Q 006672 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445 (636)
Q Consensus 366 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~ 445 (636)
+..|.-+...|+...|.++-.+.. -||..-|-..+.+++..++|++-.++... .-++.-|...++.+.+
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHHH
Confidence 333444455555555555544431 24555555556666666666655543321 1223445555666666
Q ss_pred cCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHH
Q 006672 446 VGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARV 493 (636)
Q Consensus 446 ~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~ 493 (636)
.|+..+|..++.++ .+..-+..|.+.|+|.+|.+.
T Consensus 250 ~~~~~eA~~yI~k~-------------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 250 YGNKKEASKYIPKI-------------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCCHHHHHHHHHhC-------------ChHHHHHHHHHCCCHHHHHHH
Confidence 66666666555421 113344555566666665444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.047 Score=53.41 Aligned_cols=137 Identities=12% Similarity=0.093 Sum_probs=92.5
Q ss_pred HHHHHhhHHhhcCCHHHHHHHHhhccC---------CChhcHHHHHHHHHHcCChHHHHHHHHHHhH----cCCC-CCHH
Q 006672 333 IGTALVDMYAKCGNIEAASLVFGETKE---------KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY----SGTE-PDGT 398 (636)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~-p~~~ 398 (636)
.|..|...|.-.|+++.|...-+.=.+ ..-..+..+..++.-.|+++.|.+.|+.... .|-+ ....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 344555556666777777655432111 1234677888888888999999998887543 2222 1234
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhHh---hc-CCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCC
Q 006672 399 VFLAILTACWYSGQVKLALNFFDSMRF---DY-FIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPK 469 (636)
Q Consensus 399 t~~~ll~a~~~~g~~~~a~~~~~~m~~---~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~ 469 (636)
+..+|..+|.-...++.|+.++.+-.. +. ...-....+.+|..+|...|..++|+.+.+...+..++++..
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~ 351 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDT 351 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCc
Confidence 566777888888888999988876542 11 122335678889999999999999999988888776666544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.055 Score=55.96 Aligned_cols=61 Identities=7% Similarity=0.102 Sum_probs=37.6
Q ss_pred ccccCCCCCCCCHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhcc
Q 006672 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH 88 (636)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 88 (636)
+..+...+..|+..-++..++-.+.+.+|.++|. +.|.. |.-+.+|...+.++.|.++...
T Consensus 623 L~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk---~~G~e------nRAlEmyTDlRMFD~aQE~~~~ 683 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLLLADVFAYQGKFHEAAKLFK---RSGHE------NRALEMYTDLRMFDYAQEFLGS 683 (1081)
T ss_pred HHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHH---HcCch------hhHHHHHHHHHHHHHHHHHhhc
Confidence 3334444556777777777776677777776664 34432 4556667777777777776643
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.26 E-value=2 Score=45.49 Aligned_cols=182 Identities=14% Similarity=0.081 Sum_probs=88.4
Q ss_pred CCChhHHHHHHHHhhcCCChHHHHHHhccCCC-CCcch------------HHHHHHHHHhCCCchHHHHHHHHhHHCCCC
Q 006672 60 FASSRITTQLISSASLHKSIDYALSIFDHFTP-KNLHI------------FNVLIRGLAENSHFQSCISHFVFMLRLSVR 126 (636)
Q Consensus 60 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~~~~~------------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 126 (636)
.|.+..|..|.......-.++.|...|-+... +.+.. -.+=|. +--|++++|.++|-+|-+.++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhhh-
Confidence 47888888777776666777777777755431 11111 111122 224788888888887765432
Q ss_pred CCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHhhCC-----------
Q 006672 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD----AFVRVHLADMYVQLGKTRGAFKVFDETP----------- 191 (636)
Q Consensus 127 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~----------- 191 (636)
.+....+.|++-...++++. -|-..| ...++.+.+.++....+++|.+.|..-.
T Consensus 766 --------Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~ 834 (1189)
T KOG2041|consen 766 --------AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYR 834 (1189)
T ss_pred --------hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHH
Confidence 23333444444433333211 011111 1134444444444444444444443221
Q ss_pred ----------CCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 006672 192 ----------EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260 (636)
Q Consensus 192 ----------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 260 (636)
...++.|....-.|...+.+.|.-++|.+.|-+-..|. +.+..+...+++.+|.++-++..-|.
T Consensus 835 le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~~l~q 908 (1189)
T KOG2041|consen 835 LELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRFQLPQ 908 (1189)
T ss_pred HHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhccchh
Confidence 01123344445555566666666666665554443332 22334444555555555555444333
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.15 E-value=1.5 Score=43.13 Aligned_cols=290 Identities=12% Similarity=0.049 Sum_probs=154.4
Q ss_pred HHHHHHHHHh--CCCchHHHHHHHHhHHCCCCCCcccHHHHHHHH--HccCChHHHHHHHHHHHHhCCCCChhH--HHHH
Q 006672 97 FNVLIRGLAE--NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV--ASLSLLSLGRGLHCLIVKSGVEYDAFV--RVHL 170 (636)
Q Consensus 97 ~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~l 170 (636)
|.+|-.++.. .|+-..|.++-.+-... +.-|......+|.+- .-.|+++.|++-|+-|... |.... .-.|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 5555555443 45555555554443321 334555555555442 2456667777777666542 11111 1111
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHH
Q 006672 171 ADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAG 250 (636)
Q Consensus 171 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 250 (636)
.-.--+.|..+.|+..-++.-+.- +.-...+...+...+..|+|+.|+++++.-...
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~---------------------- 217 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAA---------------------- 217 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH----------------------
Confidence 112234566666655555443322 223455566666666666666666665443210
Q ss_pred HHHhhCCCCChh--hHHHHHHHH---HhCCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHHH
Q 006672 251 ELFEQMPEKGVV--SWTAMINGF---SQNGEAEKALAMFFQMLDAGVRANDFT-VVSALSACAKVGALEAGVRVHNYISC 324 (636)
Q Consensus 251 ~~~~~~~~~~~~--~~~~li~~~---~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~ 324 (636)
...++++. .-..|+.+- .-..+...|...-.+..+ +.||-.- -.....++.+.|++.++-.+++.+-+
T Consensus 218 ----~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK 291 (531)
T COG3898 218 ----KVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK 291 (531)
T ss_pred ----HhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh
Confidence 01122211 111111111 112234445444433333 3455332 22344567788888888888888877
Q ss_pred cCCCCchhHHHHHhhHHhhcCCHHHH----HHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHH
Q 006672 325 NDFGLKGAIGTALVDMYAKCGNIEAA----SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400 (636)
Q Consensus 325 ~~~~~~~~~~~~li~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 400 (636)
....| .+... -.+.+.|+.... .+-+..|...+..+--+...+-...|++..|..--+.... ..|....|
T Consensus 292 ~ePHP--~ia~l--Y~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~ 365 (531)
T COG3898 292 AEPHP--DIALL--YVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAY 365 (531)
T ss_pred cCCCh--HHHHH--HHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHH
Confidence 65333 33322 234455543222 1235567777888888888888888998888777777666 67888888
Q ss_pred HHHHHHH-HhcCcHHHHHHHHHHhHh
Q 006672 401 LAILTAC-WYSGQVKLALNFFDSMRF 425 (636)
Q Consensus 401 ~~ll~a~-~~~g~~~~a~~~~~~m~~ 425 (636)
..+...- ...|+-.++.+.+.+..+
T Consensus 366 lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 366 LLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHhhccCchHHHHHHHHHHhc
Confidence 7777644 455999999998888774
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.025 Score=42.74 Aligned_cols=62 Identities=11% Similarity=0.124 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhHhh---cCC-CCC-hhHHHHHHHHHHhcCCchHHHHHHHHHH
Q 006672 399 VFLAILTACWYSGQVKLALNFFDSMRFD---YFI-EPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSF 460 (636)
Q Consensus 399 t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (636)
+++.+...|...|++++|+.+|++..+- .|- .|. ..++..++.+|.+.|++++|++.++++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555566666666666666555421 111 121 4566777777777777777777777554
|
... |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.064 Score=43.71 Aligned_cols=92 Identities=12% Similarity=0.075 Sum_probs=63.8
Q ss_pred HHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCC---chhHHHHHHHHH
Q 006672 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH---PSSYVLLSNIYA 482 (636)
Q Consensus 406 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~---~~~~~~l~~~~~ 482 (636)
+.+..|+.+.|++.|.+... -.+..+..||.-..+|.-+|+.++|++-++++.+-. .|.. -.+|..-+.+|.
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa---g~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELA---GDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHHH
Confidence 45667788888888877763 223456778888888888888888887777555321 2221 235667777888
Q ss_pred HcCChhHHHHHHHHHHhCCC
Q 006672 483 AEGRWKDVARVRTLMQRRSI 502 (636)
Q Consensus 483 ~~g~~~~A~~~~~~m~~~g~ 502 (636)
..|+-+.|..-|+..-+.|-
T Consensus 127 l~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HhCchHHHHHhHHHHHHhCC
Confidence 88888888888888877764
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.15 Score=44.17 Aligned_cols=67 Identities=25% Similarity=0.311 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh-----CCCccC
Q 006672 435 HHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR-----RSIKKD 505 (636)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~ 505 (636)
....++..+...|++++|.+..++ ++..+|-|...|..++.+|...|+..+|.++|+++.+ .|+.|.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~----~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps 135 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQR----ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPS 135 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHH----HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHhccCHHHHHHHHHH----HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 445677788899999999998874 4577999999999999999999999999999998753 466554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.88 E-value=1.4 Score=40.58 Aligned_cols=59 Identities=17% Similarity=0.082 Sum_probs=30.2
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHc
Q 006672 267 MINGFSQNGEAEKALAMFFQMLDAGV--RANDFTVVSALSACAKVGALEAGVRVHNYISCN 325 (636)
Q Consensus 267 li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 325 (636)
....+.+.|++++|...|+++...-. +--......+..++-+.|+++.|...++..++.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34455666666666666666665311 111223334455555666666666666665543
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.1 Score=43.51 Aligned_cols=53 Identities=21% Similarity=0.274 Sum_probs=44.5
Q ss_pred cCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHH
Q 006672 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443 (636)
Q Consensus 391 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~ 443 (636)
....|+..+..+++.+|+..|++..|.++.+...+.++++-+...|..|+.-.
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34678888999999999999999999999999988899888888888777543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.29 Score=40.09 Aligned_cols=96 Identities=17% Similarity=0.186 Sum_probs=58.3
Q ss_pred HHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC--hhHHHHHHHHHHhcC
Q 006672 371 GLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS--VKHHTVVVNLLSRVG 447 (636)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g 447 (636)
+++..|+.+.|++.|.+.+. +-|. ...|+.-..++.-.|+.++|++-+++..+-.|-+.. -..|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 34556677777777777666 4443 456777677777777777777766666543333221 223444455677777
Q ss_pred CchHHHHHHHHHH--------HHHhccCC
Q 006672 448 QDSQGYQNSQNSF--------TKLLQLKP 468 (636)
Q Consensus 448 ~~~~A~~~~~~~~--------~~~~~l~p 468 (636)
+.+.|..-|+.++ +++++++|
T Consensus 130 ~dd~AR~DFe~AA~LGS~FAr~QLV~lNP 158 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSKFAREQLVELNP 158 (175)
T ss_pred chHHHHHhHHHHHHhCCHHHHHHHHhcCh
Confidence 7777777777444 34556666
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.27 Score=46.74 Aligned_cols=96 Identities=11% Similarity=0.060 Sum_probs=57.4
Q ss_pred CCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcC---ChHHHHHHHHHHhHcCCCCCHH-HH
Q 006672 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHG---RYEQAIQYFKKMMYSGTEPDGT-VF 400 (636)
Q Consensus 328 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~-t~ 400 (636)
|.|..-|-.|...|...|+.+.|..-|.+..+ +|...+..+..++.... ...++..+|++++. ..|+.+ +.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~--~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA--LDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh--cCCccHHHH
Confidence 55666666666666666666666666665443 45555555555544322 23566677777766 555544 34
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHhHh
Q 006672 401 LAILTACWYSGQVKLALNFFDSMRF 425 (636)
Q Consensus 401 ~~ll~a~~~~g~~~~a~~~~~~m~~ 425 (636)
..|...+...|++.+|...|+.|.+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh
Confidence 4444566677777777777777764
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.047 Score=40.59 Aligned_cols=63 Identities=11% Similarity=0.150 Sum_probs=38.2
Q ss_pred HHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchh
Q 006672 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSS 473 (636)
Q Consensus 405 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~ 473 (636)
..|.+.+++++|.++++.+.. . .+.++..+...+.+|.+.|++++|.+.++++. +..|+++..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~-~-~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l----~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALE-L-DPDDPELWLQRARCLFQLGRYEEALEDLERAL----ELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHH-h-CcccchhhHHHHHHHHHhccHHHHHHHHHHHH----HHCCCcHHH
Confidence 345666677777777776664 1 12245566666677777777777777766444 446655443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.56 E-value=2 Score=41.82 Aligned_cols=163 Identities=16% Similarity=0.167 Sum_probs=95.6
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHH-CCCCC---CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCC-----CCchh
Q 006672 262 VSWTAMINGFSQNGEAEKALAMFFQMLD-AGVRA---NDFTVVSALSACAKVGALEAGVRVHNYISCNDF-----GLKGA 332 (636)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~ 332 (636)
.+|-.+..++-+.-++.+++.+-..-.. .|..| .-....++..+....+.++++.+.|+...+... .....
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 4555666666666666666655443332 12222 112333456666777778888887777664211 12345
Q ss_pred HHHHHhhHHhhcCCHHHHHHHHhhccC-------CChh------cHHHHHHHHHHcCChHHHHHHHHHHhH----cCCCC
Q 006672 333 IGTALVDMYAKCGNIEAASLVFGETKE-------KDLL------TWTAMIWGLAIHGRYEQAIQYFKKMMY----SGTEP 395 (636)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p 395 (636)
++.+|...|.+..++++|.-...+..+ .|.. +.-.|.-++...|....|.+..++..+ .|-.|
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 777888888888888776554433322 2322 222345567777888888777777544 34333
Q ss_pred C-HHHHHHHHHHHHhcCcHHHHHHHHHHhH
Q 006672 396 D-GTVFLAILTACWYSGQVKLALNFFDSMR 424 (636)
Q Consensus 396 ~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 424 (636)
. ......+...|...|+.|.|+.-|+...
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 3 2345556677888888888887777653
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.47 Score=43.72 Aligned_cols=55 Identities=18% Similarity=0.318 Sum_probs=37.2
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC--CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006672 236 LIDGFMRKGDLKKAGELFEQMPE--KG----VVSWTAMINGFSQNGEAEKALAMFFQMLDA 290 (636)
Q Consensus 236 li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 290 (636)
....+...|++++|...|+.+.. |+ ..+.-.++.++.+.|++++|...|++..+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34445667777777777777653 11 345556788888999999999999888764
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.45 E-value=1.6 Score=43.60 Aligned_cols=161 Identities=14% Similarity=0.085 Sum_probs=85.5
Q ss_pred HHhhHHhhcCCHHHHHHHHhhccCC-------ChhcHHHHHHHHHH---cCChHHHHHHHHHHhHcCCCCCHHHHHHHHH
Q 006672 336 ALVDMYAKCGNIEAASLVFGETKEK-------DLLTWTAMIWGLAI---HGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405 (636)
Q Consensus 336 ~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 405 (636)
.++-.|....+++.-.++.+.+... ....-....-++.+ .|+.++|++++..+....-.+++.||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3333455556666666666555542 11111123334444 5677777777777555545556666655554
Q ss_pred HHH----h-----cCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHH--------HHHhccCC
Q 006672 406 ACW----Y-----SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSF--------TKLLQLKP 468 (636)
Q Consensus 406 a~~----~-----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~l~p 468 (636)
.|- . ....++|...|.+.- .+.|+..+--.++.++.-.|...+...-.++.. +++. +++
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~-~~~ 301 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS-LEK 301 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc-ccc
Confidence 432 1 223566777666543 355654444444445555554333322222111 1111 112
Q ss_pred -CCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 469 -KHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 469 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
.+.=.+.++..++.-.|+.++|.+..++|.+.
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 12223447888888999999999999999875
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.72 Score=43.77 Aligned_cols=144 Identities=12% Similarity=0.119 Sum_probs=100.7
Q ss_pred HHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhc
Q 006672 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDY 427 (636)
Q Consensus 349 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 427 (636)
...+.+++...+....--.-.......|++.+|..+|+.... ..|+ ...-..+..+|...|+++.|..++..+-.+
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~- 197 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQ- 197 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCccc-
Confidence 444555555544222222233456678999999999999988 3444 456667788999999999999999877531
Q ss_pred CCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 428 FIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 428 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
..-+ ......-+..+.+.....+..++-.+. .-+|+|...-..|+..|...|+.++|.+.+-.+.+++
T Consensus 198 -~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~-----aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 198 -AQDKAAHGLQAQIELLEQAAATPEIQDLQRRL-----AADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred -chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHH-----HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 1111 122234567777777777766665543 4589999999999999999999999999888776654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.21 E-value=2.5 Score=38.99 Aligned_cols=196 Identities=15% Similarity=0.132 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHc-CCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC--CCh-hcHHHHHH-H
Q 006672 297 FTVVSALSACAKVGALEAGVRVHNYISCN-DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--KDL-LTWTAMIW-G 371 (636)
Q Consensus 297 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~-~ 371 (636)
.........+...+.+..+...+...... ........+..+...+...++...+.+.+..... ++. ..+..... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 44444555555556666655555555432 2234445555555566666666666666666554 211 22233333 6
Q ss_pred HHHcCChHHHHHHHHHHhHcCCCC----CHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhc
Q 006672 372 LAIHGRYEQAIQYFKKMMYSGTEP----DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRV 446 (636)
Q Consensus 372 ~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~ 446 (636)
+...|+++.|...+.+... ..| ....+......+...++.+.+...+..... .... ....+..+...+...
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHc
Confidence 7778888888888888755 333 223444444446677888888888888774 1223 366777788888888
Q ss_pred CCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 447 GQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 447 g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
+.+++|...+..+. ...|.....+..+...+...|.++++...+.+....
T Consensus 216 ~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 216 GKYEEALEYYEKAL----ELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred ccHHHHHHHHHHHH----hhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888887554 345544556666777777667788888887777664
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.81 Score=46.55 Aligned_cols=133 Identities=10% Similarity=-0.002 Sum_probs=91.3
Q ss_pred hcH--HHHHHHHHHc-----CChHHHHHHHHHHh-HcCCCCCH-HHHHHHHHHHHh---------cCcHHHHHHHHHHhH
Q 006672 363 LTW--TAMIWGLAIH-----GRYEQAIQYFKKMM-YSGTEPDG-TVFLAILTACWY---------SGQVKLALNFFDSMR 424 (636)
Q Consensus 363 ~~~--~~li~~~~~~-----g~~~~A~~~~~~m~-~~g~~p~~-~t~~~ll~a~~~---------~g~~~~a~~~~~~m~ 424 (636)
..| ..++.+.... ...+.|+.+|.+.. .+.+.|+. ..|..+..++.. .....+|.++-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555554431 23467888888888 22377773 344443332221 234556677777666
Q ss_pred hhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 425 FDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 425 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
+ . -+-|+.....++.++.-.|+++.|...|+++. .++|+.+.+|...+....-+|+.++|.+.+++..+..
T Consensus 332 e-l-d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~----~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs 402 (458)
T PRK11906 332 D-I-TTVDGKILAIMGLITGLSGQAKVSHILFEQAK----IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLE 402 (458)
T ss_pred h-c-CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHh----hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 4 2 23457777778888888888999999998554 7899999999999999999999999999999876643
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.2 Score=43.38 Aligned_cols=70 Identities=21% Similarity=0.328 Sum_probs=42.8
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhH----hhcCCCCChhH
Q 006672 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMR----FDYFIEPSVKH 435 (636)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~~~p~~~~ 435 (636)
....++..+...|++++|+.+.+++.. ..|. ...+..++.++...|+..+|.+.|+.+. ++.|+.|++.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344556666677777777777777777 4444 4577777777777777777777776653 34577777654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.01 E-value=2 Score=36.70 Aligned_cols=125 Identities=16% Similarity=0.198 Sum_probs=58.2
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhc
Q 006672 133 PFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212 (636)
Q Consensus 133 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 212 (636)
..++..+...+........++.+.+.+ ..+....|.++..|++.+ ..+..+.++. ..+......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 344455554555555555555555554 245556666666666543 2333344431 11223334455555555
Q ss_pred CChHHHHHHHhhCCCCChHHHHHHHHHHHhc-CCHHHHHHHHhhCCCCChhhHHHHHHHHH
Q 006672 213 GYLRKAVELFGMMPKKNVASWVSLIDGFMRK-GDLKKAGELFEQMPEKGVVSWTAMINGFS 272 (636)
Q Consensus 213 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 272 (636)
+.++++.-++.++.. +...+..+.+. ++++.|.+.+.+- .+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~~--~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVKQ--NNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 555555555544421 11112222222 5555555555542 23345555554443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.47 Score=46.97 Aligned_cols=106 Identities=10% Similarity=0.018 Sum_probs=74.1
Q ss_pred HHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCC
Q 006672 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448 (636)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~ 448 (636)
.+.|.+.|++..|...|++.+.. -+. ...-+.++..... ..-...+..+.-.|.+.+.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~--l~~-----------~~~~~~ee~~~~~---------~~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF--LEY-----------RRSFDEEEQKKAE---------ALKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH--hhc-----------cccCCHHHHHHHH---------HHHHHHhhHHHHHHHhhhh
Confidence 45677778888888887776651 111 0111112221111 1123456778888889999
Q ss_pred chHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 449 DSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 449 ~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
+.+|++..+ +.++++|+|.-....=+.+|...|+++.|+..|+++++.
T Consensus 273 ~~~Ai~~c~----kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 273 YKEAIESCN----KVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHH----HHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 999988776 556889999999999999999999999999999999883
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.48 Score=44.48 Aligned_cols=102 Identities=18% Similarity=0.219 Sum_probs=73.4
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHH
Q 006672 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD----GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTV 438 (636)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 438 (636)
.|+.-+..| +.|++..|...|...++.. |+ ...+-.|..++...|++++|..+|..+.++++-.|. ++.+--
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 366555544 5677888888888888742 33 234556778888888888888888888877766665 477778
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHHhccCCCCch
Q 006672 439 VVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPS 472 (636)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~ 472 (636)
++....+.|+.++|...+++..++ -|..+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~----YP~t~a 250 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR----YPGTDA 250 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH----CCCCHH
Confidence 888888888888888888866544 565443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.66 E-value=4.6 Score=39.26 Aligned_cols=132 Identities=9% Similarity=0.081 Sum_probs=61.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHC--------CCCCCH-----HHHHHHHHHHHhcCCcH---HHHHHHHHHHHcCC
Q 006672 264 WTAMINGFSQNGEAEKALAMFFQMLDA--------GVRAND-----FTVVSALSACAKVGALE---AGVRVHNYISCNDF 327 (636)
Q Consensus 264 ~~~li~~~~~~g~~~~A~~l~~~m~~~--------g~~p~~-----~t~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~ 327 (636)
||.-...+.+..++++|..++++..+. ...|+. .++..++.++...+..+ .|..+.+.+. ...
T Consensus 39 yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~-~e~ 117 (278)
T PF08631_consen 39 YNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLE-SEY 117 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH-HhC
Confidence 443333333333777777766665432 122332 23445555555555443 3333444443 222
Q ss_pred CCchhHHHHHhhHHhhcCCHHHHHHHHhhccCC---ChhcHHHHHHHHHH--cCChHHHHHHHHHHhHcCCCCC
Q 006672 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEK---DLLTWTAMIWGLAI--HGRYEQAIQYFKKMMYSGTEPD 396 (636)
Q Consensus 328 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~ 396 (636)
+..+.++..-++.+.+.++.+++.+++.+|... ....+...+..+.. ......|...+..++...+.|.
T Consensus 118 ~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 118 GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCC
Confidence 333444444455555566666666666666541 22344444444311 1223445555555544434444
|
It is also involved in sporulation []. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.64 E-value=1 Score=38.08 Aligned_cols=62 Identities=13% Similarity=0.247 Sum_probs=38.6
Q ss_pred HHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCc
Q 006672 406 ACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHP 471 (636)
Q Consensus 406 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~ 471 (636)
...+.|++++|.+.|+.+...+...|- ....-.++.+|.+.|++++|...+++ .++++|.++
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~r----FirLhP~hp 81 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDR----FIRLHPTHP 81 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHH----HHHhCCCCC
Confidence 344667777777777777654433332 34455667777777777777776663 346676654
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=94.59 E-value=2.4 Score=42.42 Aligned_cols=70 Identities=14% Similarity=0.102 Sum_probs=38.1
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCC---C----hhhHHHHHHHHHh---CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006672 237 IDGFMRKGDLKKAGELFEQMPEK---G----VVSWTAMINGFSQ---NGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306 (636)
Q Consensus 237 i~~~~~~g~~~~A~~~~~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 306 (636)
+-.|....+++...++.+.+... + ...--..+-++-+ .|+.++|++++..+....-.+++.|+..+...|
T Consensus 148 llSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 148 LLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred HHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 33455555556555565555432 1 1111122334444 677777777777755555566667776665554
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.17 Score=51.18 Aligned_cols=64 Identities=11% Similarity=0.004 Sum_probs=51.2
Q ss_pred CCchhHHHHHhhHHhhcCCHHHHHHHHhhccC--CCh----hcHHHHHHHHHHcCChHHHHHHHHHHhHc
Q 006672 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKE--KDL----LTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391 (636)
Q Consensus 328 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 391 (636)
+.+...++.+..+|.+.|++++|...|++..+ |+. .+|..+..+|...|+.++|++.+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45677888888888888888888888888664 432 35888888888888888888888888874
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.37 E-value=2 Score=43.85 Aligned_cols=109 Identities=12% Similarity=0.109 Sum_probs=72.5
Q ss_pred ChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHH
Q 006672 377 RYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQ 454 (636)
Q Consensus 377 ~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 454 (636)
...+|.++-++..+ +.|+ +.....+..+....++++.|...|++... +.|+ +..|........-+|+.++|.+
T Consensus 319 ~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~a~~ 393 (458)
T PRK11906 319 AAQKALELLDYVSD--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEEARI 393 (458)
T ss_pred HHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 34567777777777 4444 55666666666777788999999988874 6676 5566667777777899999988
Q ss_pred HHHHHHHHHhccCCCCchh--HHHHHHHHHHcCChhHHHHHHH
Q 006672 455 NSQNSFTKLLQLKPKHPSS--YVLLSNIYAAEGRWKDVARVRT 495 (636)
Q Consensus 455 ~~~~~~~~~~~l~p~~~~~--~~~l~~~~~~~g~~~~A~~~~~ 495 (636)
.+++ .++++|.-..+ ....++.|...+ .++|++++-
T Consensus 394 ~i~~----alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 394 CIDK----SLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHHH----HhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHh
Confidence 8874 44778864432 333344555554 566666653
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.37 E-value=5.4 Score=38.75 Aligned_cols=236 Identities=11% Similarity=-0.009 Sum_probs=116.5
Q ss_pred CCChhHHHHHHHHhhcCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCCc----hHHHHHHHHhHHCCCCCCcccHHHH
Q 006672 60 FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHF----QSCISHFVFMLRLSVRPNRLTYPFV 135 (636)
Q Consensus 60 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~t~~~l 135 (636)
.++..+....+..+...|..+-...+..-...+|...-...+.++.+.|+. .+++..+..+... .|+...-...
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A 111 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASA 111 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 456666666777777776544433333333455666666666777777654 3566667666332 2454444455
Q ss_pred HHHHHccCChHH--HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcC
Q 006672 136 SKSVASLSLLSL--GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213 (636)
Q Consensus 136 l~~~~~~~~~~~--a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 213 (636)
+.+++..+.... .....+.+...-..++..+.-..+.++.+.|+. +|...+-.+.+ .+|...-...+.++.+.+
T Consensus 112 ~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~ 187 (280)
T PRK09687 112 INATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDE-AAIPLLINLLK---DPNGDVRNWAAFALNSNK 187 (280)
T ss_pred HHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH-HHHHHHHHHhc---CCCHHHHHHHHHHHhcCC
Confidence 555554432110 112222222222344666666667777666653 44444444443 233333333444444432
Q ss_pred -ChHHHHHH-HhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 006672 214 -YLRKAVEL-FGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291 (636)
Q Consensus 214 -~~~~A~~~-~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 291 (636)
....+... ...+..+|..+....+.++++.|+..-.-.+.+.+..++ ..-..+.++...|.. +|+..+.++.+.
T Consensus 188 ~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~- 263 (280)
T PRK09687 188 YDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK- 263 (280)
T ss_pred CCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh-
Confidence 12233333 333334566666666666666666433333333333333 223455556666664 466666665543
Q ss_pred CCCCHHHHHHHHHHH
Q 006672 292 VRANDFTVVSALSAC 306 (636)
Q Consensus 292 ~~p~~~t~~~ll~~~ 306 (636)
.||...-...+.+|
T Consensus 264 -~~d~~v~~~a~~a~ 277 (280)
T PRK09687 264 -FDDNEIITKAIDKL 277 (280)
T ss_pred -CCChhHHHHHHHHH
Confidence 23544444444443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.35 E-value=9.7 Score=41.63 Aligned_cols=181 Identities=12% Similarity=0.053 Sum_probs=115.8
Q ss_pred HHHHHHHHhhcCCChHHHHHHhccCCCCCcchHH----HHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHH
Q 006672 65 ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFN----VLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140 (636)
Q Consensus 65 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 140 (636)
....-++++.+...++.|..+-..-.. +...-. .-.+-+-+.|++++|..-|-+-... +.| ..+++-+.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfL 408 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFL 408 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhc
Confidence 445667778888888888887765432 222222 2233456789999999888776532 223 33555565
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHH
Q 006672 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220 (636)
Q Consensus 141 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 220 (636)
.......-..+++.+.+.|+... ..-+.|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+-.++|.-
T Consensus 409 daq~IknLt~YLe~L~~~gla~~-dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~ 484 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLANS-DHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAEL 484 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccccc-hhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHH
Confidence 66666666777888888886533 344679999999999999988887766 3311 1123445566666666677666
Q ss_pred HHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 006672 221 LFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260 (636)
Q Consensus 221 ~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 260 (636)
+-..... +......+ +-..+++++|.+.+..++-+.
T Consensus 485 LA~k~~~-he~vl~il---le~~~ny~eAl~yi~slp~~e 520 (933)
T KOG2114|consen 485 LATKFKK-HEWVLDIL---LEDLHNYEEALRYISSLPISE 520 (933)
T ss_pred HHHHhcc-CHHHHHHH---HHHhcCHHHHHHHHhcCCHHH
Confidence 6544433 33333333 345688999999999887543
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.34 Score=45.28 Aligned_cols=100 Identities=18% Similarity=0.161 Sum_probs=75.9
Q ss_pred HHHHHhhcc--CCChhcHHHHHHHHHHc-----CChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhc------------
Q 006672 350 ASLVFGETK--EKDLLTWTAMIWGLAIH-----GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS------------ 410 (636)
Q Consensus 350 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~------------ 410 (636)
.++.|..+. ++|-.+|-+++..+..+ +..+-....++.|.+-|+.-|..+|+.|+..+-+.
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345566665 46777788887777654 55666667788888889988888998888776442
Q ss_pred ----CcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCch
Q 006672 411 ----GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDS 450 (636)
Q Consensus 411 ----g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~ 450 (636)
.+-+-++.++++|. .+|+.||-++-..++.+++|.|-.-
T Consensus 133 ~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred hhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhccccccH
Confidence 23355788999998 6999999999999999999988653
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.30 E-value=2.3 Score=41.53 Aligned_cols=125 Identities=11% Similarity=0.037 Sum_probs=58.6
Q ss_pred HHhhHHhhcCCHHHHHHHHhhccC-------C--ChhcHHHHHHHHHHcCChHHHHHHHHHHhH----cCCCCCHHHHHH
Q 006672 336 ALVDMYAKCGNIEAASLVFGETKE-------K--DLLTWTAMIWGLAIHGRYEQAIQYFKKMMY----SGTEPDGTVFLA 402 (636)
Q Consensus 336 ~li~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~t~~~ 402 (636)
++..++...+.++.+.+.|+.... + ....+-+|.+.|.+..++++|+-+..+..+ .++.--..-|..
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 344445555555555555554432 1 123555666666666666666655554433 111111122322
Q ss_pred HH-----HHHHhcCcHHHHHHHHHHhHhh---cCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHH
Q 006672 403 IL-----TACWYSGQVKLALNFFDSMRFD---YFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSF 460 (636)
Q Consensus 403 ll-----~a~~~~g~~~~a~~~~~~m~~~---~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (636)
++ -++...|....|.+.-++..+- .|-+|. .....++.|.|...|+.+.|..-|+++.
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 21 2344455555555555544321 122221 2333455566666666666666555444
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.27 E-value=12 Score=42.55 Aligned_cols=161 Identities=14% Similarity=0.147 Sum_probs=92.4
Q ss_pred CChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 006672 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257 (636)
Q Consensus 178 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 257 (636)
+++++|+.-+.++- ...|.-.++.--+.|.+.+|+.++.-=.+.-...|.+..+-+.....+++|.-.|+..-
T Consensus 894 ~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~G 966 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCG 966 (1265)
T ss_pred HHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhc
Confidence 45566665555443 22344444444556666777666643322233345555555556666677666666543
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHH
Q 006672 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT--VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT 335 (636)
Q Consensus 258 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 335 (636)
+. .--+.+|...|+|.+|+.+-.+|... -|... -..|.+-+...++.-+|-++..+.... | .
T Consensus 967 kl-----ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~ 1030 (1265)
T KOG1920|consen 967 KL-----EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----E 1030 (1265)
T ss_pred cH-----HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----H
Confidence 31 22356777888899988887776531 12222 245666677777777777766655422 1 2
Q ss_pred HHhhHHhhcCCHHHHHHHHhhccCCC
Q 006672 336 ALVDMYAKCGNIEAASLVFGETKEKD 361 (636)
Q Consensus 336 ~li~~~~~~g~~~~A~~~~~~~~~~~ 361 (636)
-.+..|++...+++|.++-......|
T Consensus 1031 ~av~ll~ka~~~~eAlrva~~~~~~d 1056 (1265)
T KOG1920|consen 1031 EAVALLCKAKEWEEALRVASKAKRDD 1056 (1265)
T ss_pred HHHHHHhhHhHHHHHHHHHHhcccch
Confidence 34556777778888887766655433
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.91 Score=43.64 Aligned_cols=118 Identities=12% Similarity=-0.051 Sum_probs=81.7
Q ss_pred hCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCh----hHHHHHHHHHHhcCChH
Q 006672 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA----FVRVHLADMYVQLGKTR 181 (636)
Q Consensus 106 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~ 181 (636)
.+|+..+|-..++++++. .+.|...+...=.+|...|+...-+..+++++.. ..+|. ++...+.-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 467777877788887764 4446677777777888888888888877777654 12333 33333444455788888
Q ss_pred HHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC
Q 006672 182 GAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226 (636)
Q Consensus 182 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 226 (636)
+|++.-++..+.+ +-|..+-.+....+-.+|+..++.++..+-.
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 8888888887766 6677777777777777888888777765443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.21 E-value=2.6 Score=43.82 Aligned_cols=130 Identities=14% Similarity=0.109 Sum_probs=71.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHH
Q 006672 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280 (636)
Q Consensus 201 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 280 (636)
-.+.++.-+-+.|..+.|+++.. |+ ..-.+...++|+++.|.++.++.. +...|..|.....+.|+++-|
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~-----D~---~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lA 366 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVT-----DP---DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELA 366 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcC-----Ch---HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHH
Confidence 35566666666677777766632 22 233344566777777777765554 455777777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHh
Q 006672 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355 (636)
Q Consensus 281 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 355 (636)
.+.|++..+ +..++-.|...|+.+.-.++.......| . ++....++.-.|+.++..+++.
T Consensus 367 e~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-~-----~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 367 EECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG-D-----INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-C-----HHHHHHHHHHcCCHHHHHHHHH
Confidence 777765432 3344445556666665555555555444 1 2233333333455555554443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.7 Score=45.82 Aligned_cols=141 Identities=11% Similarity=0.044 Sum_probs=84.8
Q ss_pred HhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHH
Q 006672 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416 (636)
Q Consensus 337 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 416 (636)
-.+.|.+.|++..|...|++...- + -|...-+.++... ... .-..++..+.-+|.+.+.+.+|
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~--------l-~~~~~~~~ee~~~-~~~-------~k~~~~lNlA~c~lKl~~~~~A 276 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF--------L-EYRRSFDEEEQKK-AEA-------LKLACHLNLAACYLKLKEYKEA 276 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH--------h-hccccCCHHHHHH-HHH-------HHHHHhhHHHHHHHhhhhHHHH
Confidence 456788999999999888775420 0 0000000011110 110 1123455555666677777777
Q ss_pred HHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhH-HHHHHH
Q 006672 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKD-VARVRT 495 (636)
Q Consensus 417 ~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~ 495 (636)
++.-+.... . -++++...---..+|...|.++.|+..|+++. +++|.|-.+-..|+.+-.+..++.+ ..++|.
T Consensus 277 i~~c~kvLe-~-~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~----k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 277 IESCNKVLE-L-DPNNVKALYRRGQALLALGEYDLARDDFQKAL----KLEPSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred HHHHHHHHh-c-CCCchhHHHHHHHHHHhhccHHHHHHHHHHHH----HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777776663 1 23445555555667777788888888777544 6788888888778777776665554 477888
Q ss_pred HHHhC
Q 006672 496 LMQRR 500 (636)
Q Consensus 496 ~m~~~ 500 (636)
.|-.+
T Consensus 351 ~mF~k 355 (397)
T KOG0543|consen 351 NMFAK 355 (397)
T ss_pred HHhhc
Confidence 88654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.14 E-value=10 Score=40.99 Aligned_cols=108 Identities=16% Similarity=0.070 Sum_probs=78.4
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHH
Q 006672 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443 (636)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~ 443 (636)
+.+--+.-+...|+..+|.++-.+.+ -||...|-.-+.+++..+++++-+++-+..+. +.-|.-.+..+
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks-------PIGy~PFVe~c 754 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS-------PIGYLPFVEAC 754 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC-------CCCchhHHHHH
Confidence 44555666777888888888877764 37777777778888889999887777665542 44566678888
Q ss_pred HhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHH
Q 006672 444 SRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVR 494 (636)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 494 (636)
.+.|+.+||.+++.+. .+ +.-...+|.+.|++.+|.++-
T Consensus 755 ~~~~n~~EA~KYiprv-------~~-----l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRV-------GG-----LQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HhcccHHHHhhhhhcc-------CC-----hHHHHHHHHHhccHHHHHHHH
Confidence 8999999998887632 11 115677888889888887764
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.66 Score=38.68 Aligned_cols=49 Identities=6% Similarity=0.145 Sum_probs=29.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH-cCCCCchhHHHHHhh
Q 006672 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISC-NDFGLKGAIGTALVD 339 (636)
Q Consensus 291 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~ 339 (636)
...|+..++.+++.+++..+++..|.++.+.+.+ .+++.+..+|..|+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3556666666666666666666666666666554 345555555555554
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.83 E-value=10 Score=39.92 Aligned_cols=182 Identities=10% Similarity=-0.000 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHH
Q 006672 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGL 372 (636)
Q Consensus 296 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 372 (636)
..+|...+.--...|+.+.+.-+++...-. +..-...|-..+.-....|+.+-|..++....+ +....-..+-.++
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 345555566566667777776666665421 122233444444444444777766666655443 2222222222222
Q ss_pred H-HcCChHHHHHHHHHHhHcCCCCCHH-HHHHHHHHHHhcCcHHHHH---HHHHHhHhhcCCCCC--hhHHHHHHH-HHH
Q 006672 373 A-IHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLAL---NFFDSMRFDYFIEPS--VKHHTVVVN-LLS 444 (636)
Q Consensus 373 ~-~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~---~~~~~m~~~~~~~p~--~~~~~~l~~-~~~ 444 (636)
. ..|++..|..+++..... . |+.. .-..-+....+.|..+.+. +++..... ....+. ...+.-.+. .+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-GKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-cccCcchhHHHHHHHHHHHHH
Confidence 2 356777777777777664 3 5532 2222233344566666666 33332221 111111 111111111 122
Q ss_pred hcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcC
Q 006672 445 RVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEG 485 (636)
Q Consensus 445 ~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g 485 (636)
-.++.+.|..++.++ .+..|++...|..+++.....+
T Consensus 453 i~~d~~~a~~~l~~~----~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEA----NDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHh----hhcCCccHHHHHHHHHHHHhCC
Confidence 245666666666544 3567778788888877766655
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.93 Score=42.63 Aligned_cols=101 Identities=15% Similarity=0.099 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHH
Q 006672 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLL 477 (636)
Q Consensus 399 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l 477 (636)
.|+.-+. +...|++..|..-|...++.+.-.+ .+..+--|+..+...|++++|...|..+.+. .--.|+-|..+.-|
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD-YPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh-CCCCCCChHHHHHH
Confidence 4666554 4577889999999999986442111 2444555899999999999999999987754 34456677889999
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCC
Q 006672 478 SNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 478 ~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
+.+..+.|+.++|..++++..++=
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHC
Confidence 999999999999999999998753
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.62 E-value=7.4 Score=40.50 Aligned_cols=129 Identities=19% Similarity=0.251 Sum_probs=66.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCH
Q 006672 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDL 246 (636)
Q Consensus 167 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~ 246 (636)
.+.++..+-+.|..+.|+.+-. |.. .-.....+.|+.+.|.++.++.. +...|..|.+...+.|++
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~ 363 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNI 363 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBH
T ss_pred HHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCH
Confidence 4555555556666666655522 221 12233445566666666555443 445666666666666666
Q ss_pred HHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Q 006672 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320 (636)
Q Consensus 247 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 320 (636)
+-|++.|.+..+ |..|+-.|.-.|+.+.-.++.+.....|- ++....++.-.|+.++..+++.
T Consensus 364 ~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 364 ELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 666666666543 44555556666766666555555555441 3334444445566655554443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.54 E-value=1.1 Score=43.23 Aligned_cols=161 Identities=12% Similarity=0.031 Sum_probs=100.2
Q ss_pred hcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHH--HH--HHHhcCcHHH
Q 006672 343 KCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI--LT--ACWYSGQVKL 415 (636)
Q Consensus 343 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l--l~--a~~~~g~~~~ 415 (636)
..|+..+|-..++++.+ .|..+|+---.+|...|+.+.-...+++.... ..||...|..+ +- ++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 35666777767777664 46777777777888888888777777777653 34554333222 22 3346788888
Q ss_pred HHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHH
Q 006672 416 ALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVR 494 (636)
Q Consensus 416 a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 494 (636)
|++.-++..+ +.| |.-.-.++...+...|+++++.++..+-.+.--.-.-.-...|-..+-.+...+.++.|+++|
T Consensus 194 AEk~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 194 AEKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred HHHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 8887776653 333 344455677778888888888888764322211100111234555566677778888888888
Q ss_pred HHHHhCCCccCCe
Q 006672 495 TLMQRRSIKKDPG 507 (636)
Q Consensus 495 ~~m~~~g~~~~~~ 507 (636)
+.-.-..+.++.+
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 7665555666554
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.50 E-value=4.3 Score=34.60 Aligned_cols=39 Identities=10% Similarity=0.111 Sum_probs=16.8
Q ss_pred HHHHHhhcCCChHHHHHHhccCCC---CCcchHHHHHHHHHh
Q 006672 68 QLISSASLHKSIDYALSIFDHFTP---KNLHIFNVLIRGLAE 106 (636)
Q Consensus 68 ~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~ 106 (636)
.+|..+.+.+........++.+.. .+....|.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHH
Confidence 344444444444444444443321 223344444444444
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.37 Score=45.08 Aligned_cols=116 Identities=11% Similarity=0.100 Sum_probs=76.5
Q ss_pred HHHHHhccCC--CCCcchHHHHHHHHHh-----CCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHH
Q 006672 81 YALSIFDHFT--PKNLHIFNVLIRGLAE-----NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153 (636)
Q Consensus 81 ~A~~~f~~~~--~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 153 (636)
.....|...+ .+|-.+|-+++..+.. .+..+--...++.|.+.|+.-|..+|+.||..+-+-.
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk---------- 121 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK---------- 121 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------
Confidence 3455676666 5677788888777654 3556666667788888888888888888887764322
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCCh
Q 006672 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215 (636)
Q Consensus 154 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 215 (636)
+.|... +....-.|= .+-+-+.+++++|...|+.||-.+-..+++++.+.+..
T Consensus 122 ------fiP~nv-fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 122 ------FIPQNV-FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred ------cccHHH-HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 111111 111111121 23345778888888888888888888888888887764
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.88 Score=39.43 Aligned_cols=87 Identities=9% Similarity=-0.094 Sum_probs=41.1
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHH
Q 006672 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348 (636)
Q Consensus 269 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 348 (636)
.-+.+.|++++|..+|+-+.-.+ .-+..-+..|..++-..+++++|...|......+ ..|+...-.....|...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHH
Confidence 33455666666666666555432 1222233344444445555666666555544332 122333333444444445555
Q ss_pred HHHHHHhhc
Q 006672 349 AASLVFGET 357 (636)
Q Consensus 349 ~A~~~~~~~ 357 (636)
.|...|...
T Consensus 123 ~A~~~f~~a 131 (165)
T PRK15331 123 KARQCFELV 131 (165)
T ss_pred HHHHHHHHH
Confidence 554444443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.17 Score=31.38 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHH
Q 006672 473 SYVLLSNIYAAEGRWKDVARVRTLMQ 498 (636)
Q Consensus 473 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 498 (636)
+|..|+.+|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788889999999999999888854
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=92.81 E-value=3.6 Score=43.37 Aligned_cols=119 Identities=12% Similarity=0.011 Sum_probs=72.6
Q ss_pred cCChHHHHHHHHHHhHcCCCCCHHHHHHHH-HHHHhcCcHHHHHHHHHHhHhhcCCCCC--hhHHHHHHHHHHhcCCchH
Q 006672 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAIL-TACWYSGQVKLALNFFDSMRFDYFIEPS--VKHHTVVVNLLSRVGQDSQ 451 (636)
Q Consensus 375 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~~ 451 (636)
....+.|.++++.+.+ .-|+...|...- +.+...|++++|.+.|+.......--|. ...+--++..+.-.+++++
T Consensus 246 ~~~~~~a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 3456778888888877 667766665443 3556678888888888865421111121 2234445666777888888
Q ss_pred HHHHHHHHHHHHhccCCCCchhHH-HHHHHHHHcCCh-------hHHHHHHHHHHh
Q 006672 452 GYQNSQNSFTKLLQLKPKHPSSYV-LLSNIYAAEGRW-------KDVARVRTLMQR 499 (636)
Q Consensus 452 A~~~~~~~~~~~~~l~p~~~~~~~-~l~~~~~~~g~~-------~~A~~~~~~m~~ 499 (636)
|.+.+.+..+ .+.-+...|. ..+-+|...|+. ++|.+++++...
T Consensus 324 A~~~f~~L~~----~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLK----ESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHh----ccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 8888875543 2333333433 344456667777 777777776544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.77 E-value=3.6 Score=37.22 Aligned_cols=163 Identities=16% Similarity=0.146 Sum_probs=86.9
Q ss_pred CCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChh-cHHHHHH--HHHHcCChHHHHHHHHHHhHcC-CCCCHHHHHHH
Q 006672 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL-TWTAMIW--GLAIHGRYEQAIQYFKKMMYSG-TEPDGTVFLAI 403 (636)
Q Consensus 328 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~--~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~l 403 (636)
|.-+.++|-|.--+...|+++.|.+.|+...+-|+. -|..+=. ++.-.|+++-|.+=|.+.-+.. -.|-...|..+
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl 175 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYL 175 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHH
Confidence 334677888888888888888888888888774432 2222222 2334578888877666665532 12222344333
Q ss_pred HHHHHhcCcHHHHHHHH-HHhHhhcCCCCChhHHHH-HHHHHHhcCCchHHHHHHHHHHHHH---hccCCCCchhHHHHH
Q 006672 404 LTACWYSGQVKLALNFF-DSMRFDYFIEPSVKHHTV-VVNLLSRVGQDSQGYQNSQNSFTKL---LQLKPKHPSSYVLLS 478 (636)
Q Consensus 404 l~a~~~~g~~~~a~~~~-~~m~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~---~~l~p~~~~~~~~l~ 478 (636)
.. ..-++.+|..-+ ++.. ..+.+-|.. ++..|. |++.+ ..+++++..-. -.+...-..+|.-|+
T Consensus 176 ~E---~k~dP~~A~tnL~qR~~-----~~d~e~WG~~iV~~yL--gkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~ 244 (297)
T COG4785 176 NE---QKLDPKQAKTNLKQRAE-----KSDKEQWGWNIVEFYL--GKISE-ETLMERLKADATDNTSLAEHLTETYFYLG 244 (297)
T ss_pred HH---hhCCHHHHHHHHHHHHH-----hccHhhhhHHHHHHHH--hhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHH
Confidence 32 233555555433 3332 133333332 222222 22211 11222111100 000001235788899
Q ss_pred HHHHHcCChhHHHHHHHHHHhCC
Q 006672 479 NIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
.-|...|+.++|..+|+.....+
T Consensus 245 K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 245 KYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHhccccHHHHHHHHHHHHHHh
Confidence 99999999999999999887644
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=92.74 E-value=7 Score=41.24 Aligned_cols=12 Identities=8% Similarity=0.160 Sum_probs=7.2
Q ss_pred CCChHHHHHHhc
Q 006672 76 HKSIDYALSIFD 87 (636)
Q Consensus 76 ~g~~~~A~~~f~ 87 (636)
.+++++|..+|+
T Consensus 9 nn~~~eAe~~l~ 20 (468)
T PF10300_consen 9 NNRFKEAEELLS 20 (468)
T ss_pred CCCHHHHHHHHH
Confidence 355666666665
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.63 E-value=19 Score=39.59 Aligned_cols=175 Identities=11% Similarity=0.065 Sum_probs=98.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCh---hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006672 234 VSLIDGFMRKGDLKKAGELFEQMPEKGV---VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310 (636)
Q Consensus 234 ~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 310 (636)
-.-++++.+...++.|..+-+.-..+.. .....-.+-+.+.|++++|...|-+-... +.|.. ++.-+.+..
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s~-----Vi~kfLdaq 411 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPSE-----VIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChHH-----HHHHhcCHH
Confidence 3445555666666666666554332211 12222334456778888888777665543 23322 344444445
Q ss_pred CcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChh-cHHHHHHHHHHcCChHHHHHHHHHHh
Q 006672 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL-TWTAMIWGLAIHGRYEQAIQYFKKMM 389 (636)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~ 389 (636)
....-..+++.+.+.|+ .+...-+.|+.+|.|.++.+.-.+..+...+.... -....+..+.+.+-.++|..+-.+..
T Consensus 412 ~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~ 490 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFK 490 (933)
T ss_pred HHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhc
Confidence 55555566666777774 34455567888888888888777777666521111 13344555555666666665544432
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHh
Q 006672 390 YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423 (636)
Q Consensus 390 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 423 (636)
. .......+ +-..+++++|.++++.+
T Consensus 491 ~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 491 K-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred c-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 2 22333333 33567888888887755
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.44 E-value=15 Score=37.96 Aligned_cols=59 Identities=12% Similarity=0.082 Sum_probs=41.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhH
Q 006672 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMR 424 (636)
Q Consensus 366 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 424 (636)
..+..+.-+.|+.++|++.|++|.+....-| ......|+.++...+.+.++..++.+.-
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3455566677888888888888876422112 2366677888888888888888887764
|
The molecular function of this protein is uncertain. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.33 E-value=17 Score=38.36 Aligned_cols=184 Identities=10% Similarity=0.023 Sum_probs=94.0
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCch--hHHHHHh
Q 006672 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG--AIGTALV 338 (636)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li 338 (636)
..+|+.-+.--...|+.+.+.-+|++..-. +..=...|-..+.-....|+.+.+..++....+...+..+ .+..+.+
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 457777777777788888887777776531 1111122222333333337777777666665554333222 2222222
Q ss_pred hHHhhcCCHHHHHHHHhhccC--CChh-cHHHHHHHHHHcCChHHHH---HHHHHHhHcCCCCCH--HHHHHHHH-HHHh
Q 006672 339 DMYAKCGNIEAASLVFGETKE--KDLL-TWTAMIWGLAIHGRYEQAI---QYFKKMMYSGTEPDG--TVFLAILT-ACWY 409 (636)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~---~~~~~m~~~g~~p~~--~t~~~ll~-a~~~ 409 (636)
.-..|+++.|..+++.+.+ |+.+ .-..-+....+.|+.+.+- +++.........+.. ..+..... .+.-
T Consensus 376 --~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i 453 (577)
T KOG1258|consen 376 --EESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKI 453 (577)
T ss_pred --HHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHH
Confidence 2235678888887777765 3322 1111222334556666555 233222221111111 11111111 2333
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCc
Q 006672 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQD 449 (636)
Q Consensus 410 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~ 449 (636)
.++.+.|..++..+.. -++++...|..+++...-.+..
T Consensus 454 ~~d~~~a~~~l~~~~~--~~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 454 REDADLARIILLEAND--ILPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred hcCHHHHHHHHHHhhh--cCCccHHHHHHHHHHHHhCCcc
Confidence 5677888888888764 3566677777777766655533
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.21 E-value=8.9 Score=43.63 Aligned_cols=21 Identities=5% Similarity=0.105 Sum_probs=13.4
Q ss_pred HHHHhCCChHHHHHHHHHHHH
Q 006672 269 NGFSQNGEAEKALAMFFQMLD 289 (636)
Q Consensus 269 ~~~~~~g~~~~A~~l~~~m~~ 289 (636)
-+-..+.++.+=+-+++++.+
T Consensus 859 VAq~SqkDPkEyLP~L~el~~ 879 (1265)
T KOG1920|consen 859 VAQKSQKDPKEYLPFLNELKK 879 (1265)
T ss_pred HHHHhccChHHHHHHHHHHhh
Confidence 344456677777777777663
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.07 E-value=0.33 Score=29.38 Aligned_cols=22 Identities=5% Similarity=0.018 Sum_probs=9.6
Q ss_pred HHHHHHHHHhcCCchHHHHHHH
Q 006672 436 HTVVVNLLSRVGQDSQGYQNSQ 457 (636)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~~ 457 (636)
|..+...|.+.|++++|.+.++
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~ 25 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFE 25 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHH
Confidence 3344444444444444444444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=91.96 E-value=6.3 Score=32.67 Aligned_cols=67 Identities=13% Similarity=0.174 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCc
Q 006672 433 VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIK 503 (636)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 503 (636)
.+....-++.+..+|+-+.-.+++.... +-+..+|....-++++|.+.|...++.++++++-++|++
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~----kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELK----KNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH---------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHh----hccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 4455566677788888777666665433 233447889999999999999999999999999999975
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.26 Score=29.95 Aligned_cols=23 Identities=13% Similarity=0.042 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhcCCchHHHHHHH
Q 006672 435 HHTVVVNLLSRVGQDSQGYQNSQ 457 (636)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~ 457 (636)
.|..++.+|...|++++|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~ 25 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQ 25 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHH
Confidence 34444445555555555555444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.81 Score=43.70 Aligned_cols=62 Identities=21% Similarity=0.363 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 434 KHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
.++..++..+...|+++.+.+.++ ++++++|-+...|..++.+|.+.|+...|+..++.+.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~----~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLE----RLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHH----HHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 456678888889999998888777 55688999999999999999999999999999998876
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.77 E-value=11 Score=35.24 Aligned_cols=156 Identities=15% Similarity=0.231 Sum_probs=89.3
Q ss_pred hhcCCHHHHHHHHhhccCCC------hhcHHHHHHHHHHcCChHHHHHHHHHHhHcC-CCCCHHHHHHHHHHHHh-----
Q 006672 342 AKCGNIEAASLVFGETKEKD------LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG-TEPDGTVFLAILTACWY----- 409 (636)
Q Consensus 342 ~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~----- 409 (636)
.+.|++++|.+.|+.+.... ..+--.++.++.+.+++++|+...++....- -.|| .-|...|.+.+.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQID 123 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhccCC
Confidence 34566777777776666421 1233345556667777777777777776621 2222 233333333322
Q ss_pred --cCcH---HHHHHHHHHhHhhcC---CCCChh------------HHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCC
Q 006672 410 --SGQV---KLALNFFDSMRFDYF---IEPSVK------------HHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPK 469 (636)
Q Consensus 410 --~g~~---~~a~~~~~~m~~~~~---~~p~~~------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~ 469 (636)
..+. .+|..-|+..++++. ..||+. +=..+...|.+.|.+..|..-++++.+. ..-.+.
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~ 202 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSA 202 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccc
Confidence 1222 334444444443321 122221 1134556788899998888888877765 333333
Q ss_pred CchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 470 HPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 470 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
-...+..|..+|...|-.++|.+.-+-+..
T Consensus 203 ~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 203 VREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred hHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 445667778889999999999888766654
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.26 Score=32.26 Aligned_cols=39 Identities=21% Similarity=0.371 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHH
Q 006672 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205 (636)
Q Consensus 166 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 205 (636)
++..+...|.+.|++++|.++|++..+.. +.|...|..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 34455566666666666666666665544 4444444443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.54 E-value=12 Score=35.08 Aligned_cols=51 Identities=20% Similarity=0.206 Sum_probs=24.6
Q ss_pred HHHHHcCChHHHHHHHHHHhHcCCCCC-H---HHHHHHHHHHHhcCcHHHHHHHHHH
Q 006672 370 WGLAIHGRYEQAIQYFKKMMYSGTEPD-G---TVFLAILTACWYSGQVKLALNFFDS 422 (636)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~---~t~~~ll~a~~~~g~~~~a~~~~~~ 422 (636)
.-|.+.|.+..|..-+++|++. -|+ . ..+-.+..+|...|..++|.+.-.-
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~v 229 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLEN--YPDTSAVREALARLEEAYYALGLTDEAKKTAKV 229 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhc--cccccchHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 3455556666666666666553 222 1 1233334455555555555544433
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.19 E-value=15 Score=35.31 Aligned_cols=141 Identities=12% Similarity=0.089 Sum_probs=78.3
Q ss_pred HHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCC-hhcHHH---HHHHHHHcCChHHH
Q 006672 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD-LLTWTA---MIWGLAIHGRYEQA 381 (636)
Q Consensus 306 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~---li~~~~~~g~~~~A 381 (636)
....|++.++..+++...... +-+......|+..|...|+.+.|..++..++... ..-|.. -|..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 455677788888887777654 3445666778888888888888888888877521 111221 22333333333333
Q ss_pred HHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhH-hhcCCCCChhHHHHHHHHHHhcCCchH
Q 006672 382 IQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMR-FDYFIEPSVKHHTVVVNLLSRVGQDSQ 451 (636)
Q Consensus 382 ~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~-~~~~~~p~~~~~~~l~~~~~~~g~~~~ 451 (636)
..+-++.- -.| |...-..+...+...|+.++|.+.+-.+. ++.+. -+...-..+++.+.-.|..+.
T Consensus 223 ~~l~~~~a---adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~-~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 223 QDLQRRLA---ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF-EDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-cCcHHHHHHHHHHHhcCCCCH
Confidence 33333332 234 34455556666777777777776544443 32332 233344555555554444433
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.13 E-value=12 Score=34.26 Aligned_cols=186 Identities=15% Similarity=0.149 Sum_probs=132.9
Q ss_pred CCcHHHHHHHHHHHHcCCC-CchhHHHHHhhHHhhcCCHHHHHHHHhhccC-----CChhcHHHHHHHHHHcCChHHHHH
Q 006672 310 GALEAGVRVHNYISCNDFG-LKGAIGTALVDMYAKCGNIEAASLVFGETKE-----KDLLTWTAMIWGLAIHGRYEQAIQ 383 (636)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~ 383 (636)
+....+...+......... ............+...+.+..+...+..... .....+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444455544443322 1356777788888899999999888877642 445567777788888899999999
Q ss_pred HHHHHhHcCCCCCHHHHHHHHH-HHHhcCcHHHHHHHHHHhHhhcCC--CCChhHHHHHHHHHHhcCCchHHHHHHHHHH
Q 006672 384 YFKKMMYSGTEPDGTVFLAILT-ACWYSGQVKLALNFFDSMRFDYFI--EPSVKHHTVVVNLLSRVGQDSQGYQNSQNSF 460 (636)
Q Consensus 384 ~~~~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (636)
.+.........+. ........ ++...|+++.+...+..... ... ......+......+...++.++|...+.++.
T Consensus 117 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 9999988433332 22222233 78899999999999999853 221 1234455555556778899999999998655
Q ss_pred HHHhccCCC-CchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 461 TKLLQLKPK-HPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 461 ~~~~~l~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
+..|. ....+..+...+...+++++|...+.......
T Consensus 195 ----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 232 (291)
T COG0457 195 ----KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD 232 (291)
T ss_pred ----hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC
Confidence 45666 57889999999999999999999999988744
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=90.88 E-value=19 Score=36.20 Aligned_cols=61 Identities=16% Similarity=0.107 Sum_probs=34.1
Q ss_pred chhHHHHHhhHHhhcCCHHHHHHHHhhccCC-------ChhcHHHHHHHHHHcCChHHHHHHHHHHhH
Q 006672 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEK-------DLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (636)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 390 (636)
...++..++..+.+.|+++.|...+..+... ++...-.-+..+-..|+..+|+..+++...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445556666666666666666666655541 222333334445556666666666666555
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.79 E-value=9.8 Score=35.27 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhh
Q 006672 166 VRVHLADMYVQLGKTRGAFKVFDE 189 (636)
Q Consensus 166 ~~~~li~~~~~~g~~~~A~~~~~~ 189 (636)
.++--..+|..+|..+.|-..+++
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleK 116 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEK 116 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHH
Confidence 445555667777776666555544
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=90.66 E-value=8.8 Score=31.88 Aligned_cols=60 Identities=10% Similarity=0.085 Sum_probs=31.4
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 006672 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKL 463 (636)
Q Consensus 402 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 463 (636)
..+.+....|.-|.-.+++..+.+ +-+++++..-.+..+|.+.|...+|.+++.++.+++
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~k--n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKK--NEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHhh--ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 344455556666666666655542 334556666666666666666666666666665554
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.59 E-value=3.8 Score=34.72 Aligned_cols=68 Identities=16% Similarity=0.224 Sum_probs=41.5
Q ss_pred HhhcCCHHHHHHHHhhccCC------ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCH--HHHHHHHHHHHhc
Q 006672 341 YAKCGNIEAASLVFGETKEK------DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG--TVFLAILTACWYS 410 (636)
Q Consensus 341 ~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~ 410 (636)
..+.|++++|.+.|+.+..+ ...+--.++.+|.+.|++++|+..+++.++ +.|++ +-|...+.+++.-
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir--LhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR--LHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCCCccHHHHHHHHHHH
Confidence 34556666666666666542 122444567777788888888888888877 44543 3455555554443
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=90.53 E-value=32 Score=38.20 Aligned_cols=159 Identities=11% Similarity=0.049 Sum_probs=71.4
Q ss_pred hcCCHHHHHHHHhhccC--------CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHH---HHHHHH--HHHHh
Q 006672 343 KCGNIEAASLVFGETKE--------KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT---VFLAIL--TACWY 409 (636)
Q Consensus 343 ~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll--~a~~~ 409 (636)
..|+++.|.++-+.... ..++.+..+..+..-.|++++|..+.++..+..-.-+.. .|..+. ..+..
T Consensus 470 ~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~ 549 (894)
T COG2909 470 NRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEA 549 (894)
T ss_pred hcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 35666666555544332 245556666666666777777777666655431111211 222222 22344
Q ss_pred cCc--HHHHHHHHHHhHhhcCC-C----CChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCc---hhHHHHHH
Q 006672 410 SGQ--VKLALNFFDSMRFDYFI-E----PSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHP---SSYVLLSN 479 (636)
Q Consensus 410 ~g~--~~~a~~~~~~m~~~~~~-~----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~---~~~~~l~~ 479 (636)
.|. ..+....|......... . +-...+..+..++.| ++.+..-.....+.+..-.|... ..+..|+.
T Consensus 550 qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~ 626 (894)
T COG2909 550 QGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAE 626 (894)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHH
Confidence 552 22223333333221111 1 112233333333333 33333333322222222222211 12235677
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCcc
Q 006672 480 IYAAEGRWKDVARVRTLMQRRSIKK 504 (636)
Q Consensus 480 ~~~~~g~~~~A~~~~~~m~~~g~~~ 504 (636)
++...|+.++|.....++.......
T Consensus 627 l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 627 LEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 7777777777777777776654443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.43 E-value=18 Score=35.12 Aligned_cols=198 Identities=13% Similarity=0.044 Sum_probs=88.0
Q ss_pred ChhhHHHHHHHHHhcCCh----HHHHHHHhhC--CCCChHHHHHHHHHHHhcCCH-----HHHHHHHhh-CCCCChhhHH
Q 006672 198 SVLLWNVLINGCSKIGYL----RKAVELFGMM--PKKNVASWVSLIDGFMRKGDL-----KKAGELFEQ-MPEKGVVSWT 265 (636)
Q Consensus 198 ~~~~~~~li~~~~~~g~~----~~A~~~~~~m--~~~~~~~~~~li~~~~~~g~~-----~~A~~~~~~-~~~~~~~~~~ 265 (636)
|...-...+.++.+.|+. +++...+..+ ..++..+....+.+++..+.- ..+...+.. +.+++..+-.
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~ 146 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRF 146 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHH
Confidence 444444444555555542 3455555544 345555555555555544321 122222222 2233333333
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhc
Q 006672 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG-ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344 (636)
Q Consensus 266 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 344 (636)
..+.++.+.++ ++|+..+-.+.+. +|...-...+.++...+ ..+.+...+..+. ..++..+-...+.++++.
T Consensus 147 ~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L---~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 147 AVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAML---QDKNEEIRIEAIIGLALR 219 (280)
T ss_pred HHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh---cCCChHHHHHHHHHHHcc
Confidence 44555555554 4455555555542 33333333444444332 1233333333333 134555555566666666
Q ss_pred CCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHH
Q 006672 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407 (636)
Q Consensus 345 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 407 (636)
|+......+.+.+..++ ..-..+.++...|.. +|+..+.++.+ -.||...-...+.+|
T Consensus 220 ~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~--~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 220 KDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLY--KFDDNEIITKAIDKL 277 (280)
T ss_pred CChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHh--hCCChhHHHHHHHHH
Confidence 65433333333333333 223455556666653 56666666655 233444444444443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.35 E-value=2.2 Score=38.04 Aligned_cols=89 Identities=8% Similarity=0.077 Sum_probs=60.6
Q ss_pred HHhcCcHHHHHHHHHHhHhhcCCCCC-----hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 006672 407 CWYSGQVKLALNFFDSMRFDYFIEPS-----VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIY 481 (636)
Q Consensus 407 ~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~ 481 (636)
+...|++++|..-|.....- .++. ...|..-..++.+.+.++.|++-.. +.++++|....+...-+.+|
T Consensus 105 ~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcs----Kaiel~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCS----KAIELNPTYEKALERRAEAY 178 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHH----hhHhcCchhHHHHHHHHHHH
Confidence 44566777777766666541 1221 2345555667777788877776544 55678887767777777788
Q ss_pred HHcCChhHHHHHHHHHHhCC
Q 006672 482 AAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 482 ~~~g~~~~A~~~~~~m~~~g 501 (636)
.+..++++|++-++++.+..
T Consensus 179 ek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESD 198 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhC
Confidence 88888999999888888744
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.24 E-value=0.5 Score=40.64 Aligned_cols=129 Identities=13% Similarity=0.152 Sum_probs=78.7
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCC
Q 006672 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214 (636)
Q Consensus 135 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 214 (636)
++..+.+.+.+.....+++.+.+.+...+....+.++..|++.++.+...++++.... .-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhcch
Confidence 4566666777778888888888777667788899999999999888888888874331 333556677777777
Q ss_pred hHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCh
Q 006672 215 LRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA 277 (636)
Q Consensus 215 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 277 (636)
+++|.-++.++...+..+ ..+.+.++++.|.+.+.+. .+...|..++..|...+..
T Consensus 86 ~~~a~~Ly~~~~~~~~al-----~i~~~~~~~~~a~e~~~~~--~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHDEAL-----EILHKLKDYEEAIEYAKKV--DDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp HHHHHHHHHCCTTHTTCS-----STSSSTHCSCCCTTTGGGC--SSSHHHHHHHHHHCTSTCT
T ss_pred HHHHHHHHHHcccHHHHH-----HHHHHHccHHHHHHHHHhc--CcHHHHHHHHHHHHhcCcc
Confidence 777776655443111000 0011222233333222222 2357888888888776653
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=90.19 E-value=1.8 Score=41.86 Aligned_cols=92 Identities=18% Similarity=0.183 Sum_probs=54.3
Q ss_pred HHHHHcCChHHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCC
Q 006672 370 WGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448 (636)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~ 448 (636)
+-|.++|.+++|+..|.+... +.| |++++..-..||.+...+..|..-...... . -...+.+|.|.|.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia-----L----d~~Y~KAYSRR~~ 173 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA-----L----DKLYVKAYSRRMQ 173 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH-----h----hHHHHHHHHHHHH
Confidence 457778888888888877766 566 677777777778777777666655554432 1 1233445554443
Q ss_pred chHHHHHHHHH---HHHHhccCCCCch
Q 006672 449 DSQGYQNSQNS---FTKLLQLKPKHPS 472 (636)
Q Consensus 449 ~~~A~~~~~~~---~~~~~~l~p~~~~ 472 (636)
-.+++..+.++ .+..++++|++..
T Consensus 174 AR~~Lg~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 174 ARESLGNNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHHHhhHHHHHHhHHHHHhhCcccHH
Confidence 33333333322 2345677887543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.11 E-value=8.4 Score=37.66 Aligned_cols=82 Identities=12% Similarity=0.114 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhHcCCCCCHH-H-HHHHHHHHHhcCc--HHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHH
Q 006672 379 EQAIQYFKKMMYSGTEPDGT-V-FLAILTACWYSGQ--VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ 454 (636)
Q Consensus 379 ~~A~~~~~~m~~~g~~p~~~-t-~~~ll~a~~~~g~--~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 454 (636)
+.+..+|+.+.+.|+..+.. - ...++..+..... +..+.++++.+.+ .|+++...+|..++-+-.-.+..++..+
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~-~~~kik~~~yp~lGlLall~~~~~~~~~ 238 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKK-NGVKIKYMHYPTLGLLALLEDPEEKIVE 238 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHH-cCCccccccccHHHHHHhcCCchHHHHH
Confidence 56677888888877776633 3 3333333322222 4467778888874 6888888887766543333333324444
Q ss_pred HHHHHHH
Q 006672 455 NSQNSFT 461 (636)
Q Consensus 455 ~~~~~~~ 461 (636)
-+.++.+
T Consensus 239 ~i~ev~~ 245 (297)
T PF13170_consen 239 EIKEVID 245 (297)
T ss_pred HHHHHHH
Confidence 4444443
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=90.07 E-value=4.8 Score=31.42 Aligned_cols=60 Identities=18% Similarity=0.238 Sum_probs=42.1
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 006672 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300 (636)
Q Consensus 238 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 300 (636)
..+...|++++|..+.+.+..||+..|-+|-. .+.|..+++..-+.+|..+| .|...+|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 45667788888888888888888888876643 35666677777777777776 55555554
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.03 E-value=13 Score=34.57 Aligned_cols=63 Identities=8% Similarity=-0.013 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC--CCCchhHHHHHHHHHHcCChhHHHHHHHH
Q 006672 434 KHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLK--PKHPSSYVLLSNIYAAEGRWKDVARVRTL 496 (636)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 496 (636)
+.|.....+|.|..+++||-..+.+-..-..+.+ |.--..|...+-.|.-..++..|.+.++.
T Consensus 151 el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 151 ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 3444555667777777777777664443333333 22223466666677777788888877653
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.91 E-value=34 Score=37.42 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHH
Q 006672 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRK 217 (636)
Q Consensus 166 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 217 (636)
++..+|+.+.-.|++++|-...-.|. .-+..-|..-+..+...++...
T Consensus 394 v~~~yI~HLl~~~~y~~Aas~~p~m~----gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 394 VGKTYIDHLLFEGKYDEAASLCPKML----GNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHHHHHHHHhcchHHHHHhhhHHHh----cchHHHHHHHHHHhccccccch
Confidence 45555666666666666666655555 3444555555555555544433
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.59 E-value=0.79 Score=28.35 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=18.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHH
Q 006672 263 SWTAMINGFSQNGEAEKALAMFFQML 288 (636)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~l~~~m~ 288 (636)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677777788888888888777744
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.50 E-value=0.7 Score=27.98 Aligned_cols=31 Identities=23% Similarity=0.518 Sum_probs=20.5
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC
Q 006672 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396 (636)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 396 (636)
+|..+...|...|++++|+..|++.++ +.|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 566677777777777777777777766 4443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.37 E-value=37 Score=37.13 Aligned_cols=170 Identities=17% Similarity=0.200 Sum_probs=101.2
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCCCC---ChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHH
Q 006672 171 ADMYVQLGKTRGAFKVFDETPEKNKSE---SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLK 247 (636)
Q Consensus 171 i~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~ 247 (636)
++.+.+.+.+++|++.-+..... .| -...+...|..+.-.|++++|-...-.|...+..-|---+..+...++..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 56677888899999888766543 33 34567788888888999999988888888888888877777777777665
Q ss_pred HHHHHHhhCCC-CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcC
Q 006672 248 KAGELFEQMPE-KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326 (636)
Q Consensus 248 ~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 326 (636)
....+.-.-+. .+...|..++..|.. .+.. -|.+.... -+++...-..++++- ..++.+.
T Consensus 441 ~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~----~F~e~i~~-Wp~~Lys~l~iisa~------------~~q~~q~- 501 (846)
T KOG2066|consen 441 DIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVK----GFLELIKE-WPGHLYSVLTIISAT------------EPQIKQN- 501 (846)
T ss_pred hhhccCCCCCcccCchHHHHHHHHHHH-HHHH----HHHHHHHh-CChhhhhhhHHHhhc------------chHHHhh-
Confidence 54333222111 234567777766665 2222 22222221 122222222222211 1111111
Q ss_pred CCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCCh
Q 006672 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362 (636)
Q Consensus 327 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 362 (636)
.-+..+...|+..|...++++.|...+-....+++
T Consensus 502 -Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 502 -SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred -ccchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 11222334488889999999999988888776544
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=89.34 E-value=0.84 Score=29.06 Aligned_cols=28 Identities=7% Similarity=0.069 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 006672 435 HHTVVVNLLSRVGQDSQGYQNSQNSFTK 462 (636)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 462 (636)
+++.|...|...|++++|.++++++.+.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 4555556666666666666666555443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.14 E-value=15 Score=32.28 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=24.3
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 006672 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287 (636)
Q Consensus 236 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 287 (636)
++..+...|++-+|.++.+.....+...-..++.+..+.++...=..+|+-.
T Consensus 95 iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 95 IIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344455555555555555543333333344455555555544433444333
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.07 E-value=0.8 Score=27.59 Aligned_cols=29 Identities=10% Similarity=0.177 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 472 SSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 472 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
..|..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999998773
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.05 E-value=15 Score=32.24 Aligned_cols=57 Identities=16% Similarity=0.113 Sum_probs=35.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 006672 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324 (636)
Q Consensus 264 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 324 (636)
+..++..+...|++-+|+++.+...... . .....++.+..+.++...-..++....+
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~~~-~---~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHKVD-S---VPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcc-c---CCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456677888888888888877653221 1 1224466777677766655555555444
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.75 E-value=8.4 Score=34.99 Aligned_cols=176 Identities=16% Similarity=0.055 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC
Q 006672 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225 (636)
Q Consensus 146 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 225 (636)
..|+-=|.+.+... +.-+.++|-|.--+...|+++.|.+.|+...+.. +....+.-.-.-++.-.|++.-|.+-|-+.
T Consensus 82 ~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~f 159 (297)
T COG4785 82 ALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRYKLAQDDLLAF 159 (297)
T ss_pred HHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC-CcchHHHhccceeeeecCchHhhHHHHHHH
Confidence 33444444444332 2235677777777778888888888888877554 222222211122233457777776655544
Q ss_pred CCCChH-HHHHH-HHHHHhcCCHHHHHH-HHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-------
Q 006672 226 PKKNVA-SWVSL-IDGFMRKGDLKKAGE-LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN------- 295 (636)
Q Consensus 226 ~~~~~~-~~~~l-i~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~------- 295 (636)
-+.|+. .|.+| +..--..-+..+|.. +.++....|-.-|..-|..|.-..-.++ .+|+++.... .-+
T Consensus 160 YQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e--~l~~~~~a~a-~~n~~~Ae~L 236 (297)
T COG4785 160 YQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEE--TLMERLKADA-TDNTSLAEHL 236 (297)
T ss_pred HhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHH--HHHHHHHhhc-cchHHHHHHH
Confidence 422221 11111 111112234444433 3334444444444444433332222222 1233333211 111
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHcC
Q 006672 296 DFTVVSALSACAKVGALEAGVRVHNYISCND 326 (636)
Q Consensus 296 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 326 (636)
..||--+..-+...|+.++|..+|+..+...
T Consensus 237 TEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 237 TETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 2466677777777788888877777776554
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.71 E-value=2.6 Score=40.32 Aligned_cols=75 Identities=17% Similarity=0.217 Sum_probs=53.5
Q ss_pred hhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhH-----cCCCCCHHHHHH
Q 006672 331 GAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY-----SGTEPDGTVFLA 402 (636)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 402 (636)
..++..++..+..+|+.+.+...+++..+ -+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 44566777888888888888888877765 3556788888888888888888888887765 456665555444
Q ss_pred HHH
Q 006672 403 ILT 405 (636)
Q Consensus 403 ll~ 405 (636)
...
T Consensus 233 y~~ 235 (280)
T COG3629 233 YEE 235 (280)
T ss_pred HHH
Confidence 433
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=88.69 E-value=7.4 Score=34.79 Aligned_cols=96 Identities=13% Similarity=0.069 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC--hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHH-
Q 006672 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS--VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYV- 475 (636)
Q Consensus 399 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~- 475 (636)
.+..+..-|.+.|+.+.|.+.|.++.. +...|. ...+-.++....-.|++..+...+.++....-+..+.+...-.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~-~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARD-YCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhh-hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 344444555555555555555555442 333332 3344445555555555555555555443322221111111111
Q ss_pred -HHHHHHHHcCChhHHHHHHH
Q 006672 476 -LLSNIYAAEGRWKDVARVRT 495 (636)
Q Consensus 476 -~l~~~~~~~g~~~~A~~~~~ 495 (636)
.-+-.+...|++.+|.+.|-
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl 137 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFL 137 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHH
Confidence 11222344677777777764
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.20 E-value=32 Score=35.00 Aligned_cols=400 Identities=14% Similarity=0.110 Sum_probs=221.3
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCCCCCc---chHHHHHHHHHhCCCchHHHHHHHHh
Q 006672 44 TKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNL---HIFNVLIRGLAENSHFQSCISHFVFM 120 (636)
Q Consensus 44 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m 120 (636)
+..-.++-+++... +.|...|-+||.-|...|..+.-++++++|..|-+ ..|..-+++=....++.....+|.+.
T Consensus 25 ~~D~lrLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rC 102 (660)
T COG5107 25 HGDELRLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRC 102 (660)
T ss_pred CchHHHHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHH
Confidence 33344566665544 55888999999999999999999999999997754 47988888888888999999999998
Q ss_pred HHCCCCCCcccHHHHHHHHHccCChHH------HHHHHHHHHH-hCCCCCh-hHHHHHHHHHH---------hcCChHHH
Q 006672 121 LRLSVRPNRLTYPFVSKSVASLSLLSL------GRGLHCLIVK-SGVEYDA-FVRVHLADMYV---------QLGKTRGA 183 (636)
Q Consensus 121 ~~~g~~p~~~t~~~ll~~~~~~~~~~~------a~~~~~~~~~-~g~~~~~-~~~~~li~~~~---------~~g~~~~A 183 (636)
+...+ +...|..-|....+.+..-. ..+.++..+. .+++|-. ..|+..+...- .+.++|..
T Consensus 103 L~k~l--~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~i 180 (660)
T COG5107 103 LKKSL--NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKI 180 (660)
T ss_pred Hhhhc--cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHH
Confidence 87543 45556666655544443222 2234444443 2344432 23444443321 23345666
Q ss_pred HHHHhhCCCCCCCCChhhHHHH------HHHHHh---cC----ChHHHHHHHhhCCC----------CChHH--------
Q 006672 184 FKVFDETPEKNKSESVLLWNVL------INGCSK---IG----YLRKAVELFGMMPK----------KNVAS-------- 232 (636)
Q Consensus 184 ~~~~~~m~~~~~~~~~~~~~~l------i~~~~~---~g----~~~~A~~~~~~m~~----------~~~~~-------- 232 (636)
++.+.++..-.+..=...|+.. +.-... .| -+..|.+.+++... .+..+
T Consensus 181 R~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s 260 (660)
T COG5107 181 RNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTS 260 (660)
T ss_pred HHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccc
Confidence 6777776642211111222211 111100 01 13334444444330 01111
Q ss_pred ---HHHHHHHHHhcC-----C-H-HHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 006672 233 ---WVSLIDGFMRKG-----D-L-KKAGELFEQMPE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299 (636)
Q Consensus 233 ---~~~li~~~~~~g-----~-~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 299 (636)
|-..|.--...| + . ....-+|++... -....|----.-+...++-+.|+....+-... .|. +
T Consensus 261 ~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps---L 335 (660)
T COG5107 261 DSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS---L 335 (660)
T ss_pred cchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc---h
Confidence 111111111100 0 0 000001111100 00122333333344556666666554433221 222 1
Q ss_pred HHHHHHHHhc----------------------------------CCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcC
Q 006672 300 VSALSACAKV----------------------------------GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345 (636)
Q Consensus 300 ~~ll~~~~~~----------------------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 345 (636)
...++-|-.. |+++.-.+++- ++ ...-..+|..++..-.+..
T Consensus 336 ~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~---kr-~~k~t~v~C~~~N~v~r~~ 411 (660)
T COG5107 336 TMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLL---KR-INKLTFVFCVHLNYVLRKR 411 (660)
T ss_pred heeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHH---HH-HhhhhhHHHHHHHHHHHHh
Confidence 1111111111 11111111110 00 0122456777888888888
Q ss_pred CHHHHHHHHhhccC-----CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHH-HHHHHHHHHhcCcHHHHHHH
Q 006672 346 NIEAASLVFGETKE-----KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV-FLAILTACWYSGQVKLALNF 419 (636)
Q Consensus 346 ~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~ 419 (636)
.++.|+.+|-+..+ +++..+++++.-++ .|+..-|..+|+--.. ..||... ..-.+.-+...++-+.|..+
T Consensus 412 Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f~d~~~y~~kyl~fLi~inde~naraL 488 (660)
T COG5107 412 GLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL--KFPDSTLYKEKYLLFLIRINDEENARAL 488 (660)
T ss_pred hHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCcHHHHHHH
Confidence 89999999988765 57888999998776 5778889999987665 4566543 34456666788999999999
Q ss_pred HHHhHhhcCCCCC--hhHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 006672 420 FDSMRFDYFIEPS--VKHHTVVVNLLSRVGQDSQGYQNSQNSFT 461 (636)
Q Consensus 420 ~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 461 (636)
|+..+. .+..+ ...|..+++-=..-|++..+..+-+++.+
T Consensus 489 Fetsv~--r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 489 FETSVE--RLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhHH--HHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 997664 23333 57899999988899999988888776653
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.06 E-value=7.5 Score=33.66 Aligned_cols=108 Identities=11% Similarity=-0.082 Sum_probs=60.3
Q ss_pred hhcCCChHHHHHHhccCC--CCCcch-HHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHH
Q 006672 73 ASLHKSIDYALSIFDHFT--PKNLHI-FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149 (636)
Q Consensus 73 ~~~~g~~~~A~~~f~~~~--~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 149 (636)
-.+.++.+++..+++-+. +|.... -..-...+...|++.+|+++|+++.+.+ |..-.-..|+..|.....-..=+
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCChHHH
Confidence 345678888988888654 443322 2222334678899999999999987643 33333334444444443333333
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 006672 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFK 185 (636)
Q Consensus 150 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 185 (636)
..-..+.+.+..|+. ..|+..+....+...|..
T Consensus 98 ~~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 98 RYADEVLESGADPDA---RALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHhcCCChHH---HHHHHHHHHhccccchhh
Confidence 444445555444433 235555555555555444
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.96 E-value=14 Score=32.28 Aligned_cols=49 Identities=18% Similarity=0.309 Sum_probs=24.4
Q ss_pred hcCCHHHHHHHHhhCCCCChhhHHHH-----HHHHHhCCChHHHHHHHHHHHHC
Q 006672 242 RKGDLKKAGELFEQMPEKGVVSWTAM-----INGFSQNGEAEKALAMFFQMLDA 290 (636)
Q Consensus 242 ~~g~~~~A~~~~~~~~~~~~~~~~~l-----i~~~~~~g~~~~A~~l~~~m~~~ 290 (636)
+.+..++|+.-|..+.+.+.-.|-.| .....+.|+...|...|.+.-..
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d 123 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD 123 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence 34445555555555554443222222 23345556666666666665543
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.52 E-value=2.2 Score=40.81 Aligned_cols=102 Identities=18% Similarity=0.141 Sum_probs=73.1
Q ss_pred hCCCCChhHHHHHHHHhhcCCChHHHHHHhccCC-CCCc-----chHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcc
Q 006672 57 HNLFASSRITTQLISSASLHKSIDYALSIFDHFT-PKNL-----HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRL 130 (636)
Q Consensus 57 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~-~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 130 (636)
.|.+.+..+...++..-....+++++...+-.+. .|+. .+-.+.++-+ -.-++++++.++..=.+.|+-||.+
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 4555666677777777777778888888765554 2211 1111223323 3347789999998888999999999
Q ss_pred cHHHHHHHHHccCChHHHHHHHHHHHHhC
Q 006672 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSG 159 (636)
Q Consensus 131 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 159 (636)
|++.++..+.+.+++.+|.++...|+...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999888888777654
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=87.35 E-value=1.1 Score=28.53 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 472 SSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 472 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
.+++.|+..|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4788999999999999999999998866
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=87.16 E-value=35 Score=34.28 Aligned_cols=74 Identities=9% Similarity=0.095 Sum_probs=55.5
Q ss_pred CCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCc
Q 006672 430 EPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIK 503 (636)
Q Consensus 430 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 503 (636)
.....+|..++.+..+.|+++-|...+.++.......++..+.....-+......|+.++|...++......+.
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~ 216 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLS 216 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 34467788889999999999999999887654322222335667777788999999999999999888774333
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=87.02 E-value=53 Score=36.17 Aligned_cols=181 Identities=10% Similarity=0.084 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHH-hCCCC--ChhHHHHHHHHhh-cCCChHHHHHHhccCC----CCCcc-----hHHHHHHHHHhCCCch
Q 006672 45 KQLRQIHAQIIL-HNLFA--SSRITTQLISSAS-LHKSIDYALSIFDHFT----PKNLH-----IFNVLIRGLAENSHFQ 111 (636)
Q Consensus 45 ~~a~~~~~~~~~-~g~~~--~~~~~~~li~~~~-~~g~~~~A~~~f~~~~----~~~~~-----~~~~li~~~~~~g~~~ 111 (636)
..|.+.++.+.+ ..+.| +..++-.+...|. ...+++.|+..+++.. +++.. .-..++..+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 445566666664 22333 3345666666666 4678999999887542 22211 2234455565655544
Q ss_pred HHHHHHHHhHHCCCC----CCcccHHHH-HHHHHccCChHHHHHHHHHHHHhC---CCCChhHHHHHHHHHH--hcCChH
Q 006672 112 SCISHFVFMLRLSVR----PNRLTYPFV-SKSVASLSLLSLGRGLHCLIVKSG---VEYDAFVRVHLADMYV--QLGKTR 181 (636)
Q Consensus 112 ~A~~~~~~m~~~g~~----p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~~--~~g~~~ 181 (636)
|....++..+.--. +-...|..+ +..+...++...|.+.++.+...- ..|-..++-.++.+.. +.+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 88888887653211 112222222 222223378888888888776643 2344444444444443 345455
Q ss_pred HHHHHHhhCCC---------CCCCCChhhHHHHHHHH--HhcCChHHHHHHHhhCC
Q 006672 182 GAFKVFDETPE---------KNKSESVLLWNVLINGC--SKIGYLRKAVELFGMMP 226 (636)
Q Consensus 182 ~A~~~~~~m~~---------~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~ 226 (636)
++.+..+++.. ....|-..+|..+++.+ ...|+++.+.+.++++.
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56555554411 11244566777776654 55777767766665554
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.99 E-value=5.1 Score=38.41 Aligned_cols=97 Identities=15% Similarity=0.196 Sum_probs=73.4
Q ss_pred cCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC-C--------ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCC
Q 006672 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-K--------DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395 (636)
Q Consensus 325 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 395 (636)
.|.+....+...++..-....+++++...+-+... + ...+|-.++. .-+.++++.++..=++.|+.|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhcccc
Confidence 45566666667777777777888888888776654 2 2233333332 346779999999999999999
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHhHh
Q 006672 396 DGTVFLAILTACWYSGQVKLALNFFDSMRF 425 (636)
Q Consensus 396 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 425 (636)
|..++..++..+.+.+++.+|.++...|..
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999999999888777753
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.85 E-value=28 Score=32.81 Aligned_cols=203 Identities=16% Similarity=0.156 Sum_probs=119.6
Q ss_pred CCHHHHHHHHhhCCC----C---ChhhHHHHHHHHHhCCChHHHHHHHHHHHH---CCC--CCCHHHHHHHHHHHHhcCC
Q 006672 244 GDLKKAGELFEQMPE----K---GVVSWTAMINGFSQNGEAEKALAMFFQMLD---AGV--RANDFTVVSALSACAKVGA 311 (636)
Q Consensus 244 g~~~~A~~~~~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~--~p~~~t~~~ll~~~~~~~~ 311 (636)
.++++|+.-|++..+ + +..+...+|..+.+.|++++.++.|.+|.. +.+ .-+..+.++++...+...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 355666666665432 1 234566778888889999998888888863 111 2234566777776666666
Q ss_pred cHHHHHHHHHHHHc-----CCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC--------CC-------hhcHHHHHHH
Q 006672 312 LEAGVRVHNYISCN-----DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--------KD-------LLTWTAMIWG 371 (636)
Q Consensus 312 ~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~-------~~~~~~li~~ 371 (636)
.+.-..+++.-++. +-..--.+-+-|...|...|.+..-.+++.++.. .| ...|..-|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 66666665543321 1111112235566777777777777777766543 11 2367777888
Q ss_pred HHHcCChHHHHHHHHHHhHcC-CCCCHHHHHHHHHHHH-----hcCcHHHHHHHHHHhHhhcCCCCC-----hhHHHHHH
Q 006672 372 LAIHGRYEQAIQYFKKMMYSG-TEPDGTVFLAILTACW-----YSGQVKLALNFFDSMRFDYFIEPS-----VKHHTVVV 440 (636)
Q Consensus 372 ~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~l~ 440 (636)
|..+.+-.+-..+|++.+.-. .-|.+. ...+++-|. +.|.+++|-.-|-+.-+.+.-.-+ ---|..|.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPl-ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPL-IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchH-HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 888888777788888776522 234333 344555553 567888876544433333432222 22355666
Q ss_pred HHHHhcC
Q 006672 441 NLLSRVG 447 (636)
Q Consensus 441 ~~~~~~g 447 (636)
+++.+.|
T Consensus 280 NMLmkS~ 286 (440)
T KOG1464|consen 280 NMLMKSG 286 (440)
T ss_pred HHHHHcC
Confidence 7777665
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=86.26 E-value=6.2 Score=35.27 Aligned_cols=61 Identities=11% Similarity=0.200 Sum_probs=39.1
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHH--HHHHHHHHHHhcCcHHHHHHHHHHhH
Q 006672 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT--VFLAILTACWYSGQVKLALNFFDSMR 424 (636)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~ 424 (636)
.+..+..-|.+.|+.+.|++.|.++.+.-..|... .+..++..+...+++..+.....+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45556666777777777777777776654444432 45566666666777777776666654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=86.03 E-value=1.2 Score=26.85 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=10.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHH
Q 006672 474 YVLLSNIYAAEGRWKDVARVRTLM 497 (636)
Q Consensus 474 ~~~l~~~~~~~g~~~~A~~~~~~m 497 (636)
|..++.+|...|++++|...+++.
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a 27 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444444444444444443
|
... |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.98 E-value=29 Score=32.13 Aligned_cols=67 Identities=9% Similarity=0.109 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhc-CCchHHHHHHHHHHHHHhccCCCCchhH---HHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 006672 435 HHTVVVNLLSRV-GQDSQGYQNSQNSFTKLLQLKPKHPSSY---VLLSNIYAAEGRWKDVARVRTLMQRRSI 502 (636)
Q Consensus 435 ~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~l~p~~~~~~---~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 502 (636)
++-.+.+.|-.- .+++.|+..|+++.+- .+.+..+..+- .-.+..-+..|++.+|+++|++.....+
T Consensus 115 ~~~~iaEiyEsdl~d~ekaI~~YE~Aae~-yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 115 HHIEIAEIYESDLQDFEKAIAHYEQAAEY-YKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred hhhhHHHHHhhhHHHHHHHHHHHHHHHHH-HcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455555544 6677777777766543 22232233222 2233334456888899999888766443
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=85.92 E-value=1.1 Score=25.27 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHcCChhHHHHHHH
Q 006672 473 SYVLLSNIYAAEGRWKDVARVRT 495 (636)
Q Consensus 473 ~~~~l~~~~~~~g~~~~A~~~~~ 495 (636)
....++.++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45567777777788777777664
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=85.84 E-value=41 Score=36.96 Aligned_cols=71 Identities=11% Similarity=0.002 Sum_probs=43.1
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCC-------hHHHHHHHHHHHHhCCCCChh
Q 006672 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL-------LSLGRGLHCLIVKSGVEYDAF 165 (636)
Q Consensus 93 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-------~~~a~~~~~~~~~~g~~~~~~ 165 (636)
+...| ++|-.|.+.|++++|.++..+... ........|...+..+....+ -+....-+++..+.....|++
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 44567 567788999999999999866554 345566778888888876533 223444455555443333554
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=85.81 E-value=32 Score=33.67 Aligned_cols=127 Identities=13% Similarity=0.149 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHh--cC----cHHHHHHHHHHhHhhcCCCCC--hhHHHHHHHHHHhcCCc
Q 006672 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTACWY--SG----QVKLALNFFDSMRFDYFIEPS--VKHHTVVVNLLSRVGQD 449 (636)
Q Consensus 378 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~g----~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~ 449 (636)
+++.+.+++.|.+.|.+-+..+|.+....... .. ....+..+|+.|++++..--+ -..+..++. .+.+..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA--~~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLA--MTSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHh--cccccH
Confidence 34567788889999988887766654332222 22 356788999999987665333 334444432 245555
Q ss_pred hHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCC-----hhHHHHHHHHHHhCCCccCC
Q 006672 450 SQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGR-----WKDVARVRTLMQRRSIKKDP 506 (636)
Q Consensus 450 ~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~m~~~g~~~~~ 506 (636)
++-.+-.++..+.+.+..-........|+.+++-.+. ...+.++++.+.+.|++..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~ 217 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKY 217 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccc
Confidence 4444444444444433222222233444444443221 34678889999999987544
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=85.67 E-value=5.1 Score=35.31 Aligned_cols=44 Identities=16% Similarity=0.302 Sum_probs=29.5
Q ss_pred HHhcCCchHHHHHHHHHHH---HHhccCCCCchhHHHHHHHHHHcCC
Q 006672 443 LSRVGQDSQGYQNSQNSFT---KLLQLKPKHPSSYVLLSNIYAAEGR 486 (636)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~---~~~~l~p~~~~~~~~l~~~~~~~g~ 486 (636)
+++..+..++.++++++.+ ..+.++|+...++..++++|...+.
T Consensus 38 LAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 38 LAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 3344445567777776544 4467899999999999999987664
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=85.49 E-value=7 Score=30.73 Aligned_cols=61 Identities=11% Similarity=0.140 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHH
Q 006672 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441 (636)
Q Consensus 379 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 441 (636)
-+..+-+..+....+-|++....+.+.||.+.+++..|.++|+.++.+.+ +....|..+++
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 35566667777778889999999999999999999999999998886444 33336665554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=85.29 E-value=25 Score=30.84 Aligned_cols=119 Identities=14% Similarity=0.180 Sum_probs=54.0
Q ss_pred cCCcHHHHHHHHHHHHcCCCCchhHH-HHHhhHHhhcCCHHHHHHHHhhccCCChh--cH---HHH--HHHHHHcCChHH
Q 006672 309 VGALEAGVRVHNYISCNDFGLKGAIG-TALVDMYAKCGNIEAASLVFGETKEKDLL--TW---TAM--IWGLAIHGRYEQ 380 (636)
Q Consensus 309 ~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~---~~l--i~~~~~~g~~~~ 380 (636)
.+..++|..-|..+.+.|...-+..- ..........|+...|...|+++...+.. .. -.| .-.+..+|.++.
T Consensus 71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~d 150 (221)
T COG4649 71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDD 150 (221)
T ss_pred cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHH
Confidence 34444555555555444432222111 11223344455555666666555431111 11 001 112345566666
Q ss_pred HHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhc
Q 006672 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427 (636)
Q Consensus 381 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 427 (636)
.....+-+-..+-..-...-..|.-+-.+.|++..|.+.|..+..+.
T Consensus 151 V~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 151 VSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 66555554433222222333444445556777777777777666543
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=85.26 E-value=5.5 Score=33.90 Aligned_cols=52 Identities=12% Similarity=0.112 Sum_probs=28.7
Q ss_pred cCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 446 VGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 446 ~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
.++.+++..+++.+. -+.|+.+..-..-++.+...|+|++|.++++...+.+
T Consensus 23 ~~d~~D~e~lLdALr----vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALR----VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHH----HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 455555555554322 3455555555555566666666666666666655544
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=85.11 E-value=25 Score=30.57 Aligned_cols=19 Identities=21% Similarity=0.186 Sum_probs=9.0
Q ss_pred HhhcCCHHHHHHHHhhccC
Q 006672 341 YAKCGNIEAASLVFGETKE 359 (636)
Q Consensus 341 ~~~~g~~~~A~~~~~~~~~ 359 (636)
+...|++.+|.++|+++.+
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3444555555555554443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=84.45 E-value=41 Score=32.63 Aligned_cols=222 Identities=14% Similarity=0.007 Sum_probs=114.0
Q ss_pred hCCChHHHHHHHHHHHHCC--CCCCHH------HHHHHHHHHHhcC-CcHHHHHHHHHHHHc--------CCCCc-----
Q 006672 273 QNGEAEKALAMFFQMLDAG--VRANDF------TVVSALSACAKVG-ALEAGVRVHNYISCN--------DFGLK----- 330 (636)
Q Consensus 273 ~~g~~~~A~~l~~~m~~~g--~~p~~~------t~~~ll~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~----- 330 (636)
+.|+.+.|..++.+..... ..|+.. .|+. .......+ +++.|...+++..+. ...++
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~-G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNI-GKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHH-HHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 4566666666666655421 223221 1222 22223344 777776666554332 11222
Q ss_pred hhHHHHHhhHHhhcCCHHH---HHHHHhhccC--CC-hhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHH
Q 006672 331 GAIGTALVDMYAKCGNIEA---ASLVFGETKE--KD-LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404 (636)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~---A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 404 (636)
..+...|+.+|...+..+. |.++++.+.. ++ +..+-.-+..+.+.++.+++.+.+.+|+..- .-....|..++
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 3466778888888877654 4555555543 33 4455555666666899999999999999852 21234455555
Q ss_pred HHH---HhcCcHHHHHHHHHHhHhhcCCCCChhHH--HHHH---HHHHhcCC------chHHHHHHHHHHHHH-hccCCC
Q 006672 405 TAC---WYSGQVKLALNFFDSMRFDYFIEPSVKHH--TVVV---NLLSRVGQ------DSQGYQNSQNSFTKL-LQLKPK 469 (636)
Q Consensus 405 ~a~---~~~g~~~~a~~~~~~m~~~~~~~p~~~~~--~~l~---~~~~~~g~------~~~A~~~~~~~~~~~-~~l~p~ 469 (636)
..+ ... ....|...+..+.. ..+.|....+ ..++ -+..+.++ .+...++++...+.. -++.++
T Consensus 163 ~~i~~l~~~-~~~~a~~~ld~~l~-~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~ 240 (278)
T PF08631_consen 163 HHIKQLAEK-SPELAAFCLDYLLL-NRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAE 240 (278)
T ss_pred HHHHHHHhh-CcHHHHHHHHHHHH-HHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHH
Confidence 444 333 33456666655553 3345544312 1111 12223222 333333343222111 122222
Q ss_pred CchhHHHH----HHHHHHcCChhHHHHHHHHHH
Q 006672 470 HPSSYVLL----SNIYAAEGRWKDVARVRTLMQ 498 (636)
Q Consensus 470 ~~~~~~~l----~~~~~~~g~~~~A~~~~~~m~ 498 (636)
...+..+| +..+.+.++|++|.++++-..
T Consensus 241 ~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 241 AASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22222233 445677899999999998544
|
It is also involved in sporulation []. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=83.98 E-value=8.6 Score=29.92 Aligned_cols=63 Identities=13% Similarity=0.123 Sum_probs=47.1
Q ss_pred ChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHH
Q 006672 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441 (636)
Q Consensus 377 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 441 (636)
+.-++.+-++.+....+-|++....+.++||.+.+++..|.++|+..+.+.+ .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 4456666777777778889999999999999999999999999998874333 24445655543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=83.97 E-value=2.4 Score=25.46 Aligned_cols=27 Identities=4% Similarity=0.124 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHH
Q 006672 434 KHHTVVVNLLSRVGQDSQGYQNSQNSF 460 (636)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (636)
..|..+...|...|++++|.+.|+++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 468889999999999999999998654
|
... |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.62 E-value=71 Score=34.65 Aligned_cols=143 Identities=12% Similarity=0.079 Sum_probs=65.9
Q ss_pred HHHHHHHHhhCCCCC-hhhHHHHHH----H-HHhCCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcC--
Q 006672 246 LKKAGELFEQMPEKG-VVSWTAMIN----G-FSQNGEAEKALAMFFQMLD-------AGVRANDFTVVSALSACAKVG-- 310 (636)
Q Consensus 246 ~~~A~~~~~~~~~~~-~~~~~~li~----~-~~~~g~~~~A~~l~~~m~~-------~g~~p~~~t~~~ll~~~~~~~-- 310 (636)
...|.+.++...+.+ +..-..++. + +....+.+.|+.+|+.+.+ .|. ......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~---~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGL---PPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcC---CccccHHHHHHhcCCCC
Confidence 445666666555433 222222222 2 3445677777777777655 331 123334444444422
Q ss_pred ---CcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhh-cCCHHHHHHHHhhccCC-ChhcHHHHHHHHHH----cCChHHH
Q 006672 311 ---ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK-CGNIEAASLVFGETKEK-DLLTWTAMIWGLAI----HGRYEQA 381 (636)
Q Consensus 311 ---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A 381 (636)
+.+.|..++....+.| .|+....-..+..... ..+...|.+.|...... .+.+.-.+...|.. ..+.+.|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 3455666666666555 2333332222222222 23455666666655442 22222222222221 2245566
Q ss_pred HHHHHHHhHcC
Q 006672 382 IQYFKKMMYSG 392 (636)
Q Consensus 382 ~~~~~~m~~~g 392 (636)
..++.+.-+.|
T Consensus 384 ~~~~k~aA~~g 394 (552)
T KOG1550|consen 384 FAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHcc
Confidence 66666666655
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=83.33 E-value=15 Score=32.48 Aligned_cols=62 Identities=15% Similarity=0.195 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcC----c-------HHHHHHHHHHhHhhcCCCCChhHHHHHHHHHH
Q 006672 378 YEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSG----Q-------VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444 (636)
Q Consensus 378 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g----~-------~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~ 444 (636)
+++|+.-|++.+. +.|+ ..++..+..++...+ + +++|.+.|++... ..|+.+.|..-+++..
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~---~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD---EDPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH---H-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh---cCCCcHHHHHHHHHHH
Confidence 3556666666666 7788 457777777766543 2 3444444444442 5677777776666553
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=83.22 E-value=12 Score=29.38 Aligned_cols=30 Identities=13% Similarity=0.183 Sum_probs=14.9
Q ss_pred HHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHH
Q 006672 173 MYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206 (636)
Q Consensus 173 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 206 (636)
.+...|++++|..+.+.+. .||...|.+|.
T Consensus 48 SLmNrG~Yq~Al~l~~~~~----~pdlepw~ALc 77 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLC----YPDLEPWLALC 77 (115)
T ss_pred HHHccchHHHHHHhcCCCC----CchHHHHHHHH
Confidence 3444555555555555444 45555554443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=83.13 E-value=1.7 Score=26.46 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=14.0
Q ss_pred CCchhHHHHHhhHHhhcCCHHHHH
Q 006672 328 GLKGAIGTALVDMYAKCGNIEAAS 351 (636)
Q Consensus 328 ~~~~~~~~~li~~~~~~g~~~~A~ 351 (636)
|.+...|+.|...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445556666666666666665554
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.09 E-value=14 Score=33.19 Aligned_cols=94 Identities=13% Similarity=0.145 Sum_probs=59.6
Q ss_pred HHHHHcCChHHHHHHHHHHhHcCCCCCH-----HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHH
Q 006672 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDG-----TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLL 443 (636)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~ 443 (636)
.-+..+|++++|..-|.+.+.. ++|.. +.|..-..++.+.+.++.|+.-....++ +.|+ .....--..+|
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKALERRAEAY 178 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHHHHHHHHHH
Confidence 3456778888888888888773 22221 2344444566778888888877766664 4443 22223335678
Q ss_pred HhcCCchHHHHHHHHHHHHHhccCCCCc
Q 006672 444 SRVGQDSQGYQNSQNSFTKLLQLKPKHP 471 (636)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~~~~~l~p~~~ 471 (636)
.+...+++|++-|++ +++++|...
T Consensus 179 ek~ek~eealeDyKk----i~E~dPs~~ 202 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKK----ILESDPSRR 202 (271)
T ss_pred HhhhhHHHHHHHHHH----HHHhCcchH
Confidence 888888888888774 446677543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.84 E-value=17 Score=38.27 Aligned_cols=125 Identities=18% Similarity=0.123 Sum_probs=70.0
Q ss_pred hcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhh
Q 006672 176 QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255 (636)
Q Consensus 176 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 255 (636)
-.|+++.|..++-.++ ...-+.++.-+-+.|..++|+++- +|+.- -.....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s-----~D~d~---rFelal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS-----TDPDQ---RFELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC-----CChhh---hhhhhhhcCcHHHHHHHHHh
Confidence 3466666666555444 123445556666677777776652 22211 12233466777777766544
Q ss_pred CCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcC
Q 006672 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326 (636)
Q Consensus 256 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 326 (636)
. .+..-|..|..+..+.|++..|.+.|.+..+ |..|+-.+...|+-+....+-....+.|
T Consensus 663 ~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 663 A--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred h--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 3 3356677777777778887777777766543 3345555555555544444333333333
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=82.75 E-value=28 Score=29.72 Aligned_cols=64 Identities=8% Similarity=-0.029 Sum_probs=32.2
Q ss_pred cCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCC-hhcHHHHHHHHH
Q 006672 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD-LLTWTAMIWGLA 373 (636)
Q Consensus 309 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~ 373 (636)
.++.+.+..+++.+.-.. |....+-..-.-.+...|++++|.++|+++.+.. ...|..-+.+++
T Consensus 23 ~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred cCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 556666666666554322 1122222223334556777777777777776643 224444444433
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.57 E-value=71 Score=33.22 Aligned_cols=370 Identities=9% Similarity=0.064 Sum_probs=182.6
Q ss_pred HHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhC-CCCChhHHHHHHHHHHhcCChHHHHHHHhhC
Q 006672 112 SCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG-VEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190 (636)
Q Consensus 112 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 190 (636)
....+|+..... ..-|...|..-+..|-+.+.+.....+|..|+... ..||..++.+. .-|-...+++.|+.+|..-
T Consensus 89 rIv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~-wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 89 RIVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAK-WEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhh-hHHhhccchHHHHHHHHHH
Confidence 445566655432 34488889989988888888999999999998763 34454444332 2334444599999999877
Q ss_pred CCCCCCCChhhHHHHHHH---HHh------------cCCh----HHHHHHHhhC-C------------------------
Q 006672 191 PEKNKSESVLLWNVLING---CSK------------IGYL----RKAVELFGMM-P------------------------ 226 (636)
Q Consensus 191 ~~~~~~~~~~~~~~li~~---~~~------------~g~~----~~A~~~~~~m-~------------------------ 226 (636)
...+ +.+...|-..... |.. .++. +.....+... .
T Consensus 167 LR~n-pdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~k 245 (568)
T KOG2396|consen 167 LRFN-PDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLK 245 (568)
T ss_pred hhcC-CCChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHH
Confidence 6554 4445555433221 110 0111 0000000000 0
Q ss_pred --------------CCChHHHHHHH----HHHHhc---------------CCHHHHHHHHhhCCCC--ChhhHHHHHHHH
Q 006672 227 --------------KKNVASWVSLI----DGFMRK---------------GDLKKAGELFEQMPEK--GVVSWTAMINGF 271 (636)
Q Consensus 227 --------------~~~~~~~~~li----~~~~~~---------------g~~~~A~~~~~~~~~~--~~~~~~~li~~~ 271 (636)
..|+.+|.-+. +.+.+. .+.+....+|++..+. ....|+..|..|
T Consensus 246 el~k~i~d~~~~~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~sm~e~YI~~~ 325 (568)
T KOG2396|consen 246 ELQKNIIDDLQSKAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPTESMWECYITFC 325 (568)
T ss_pred HHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 01111111110 000000 0001111222222111 123466666665
Q ss_pred HhC------CChHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhh
Q 006672 272 SQN------GEAEKALAMFFQMLDA-GVRAN-DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343 (636)
Q Consensus 272 ~~~------g~~~~A~~l~~~m~~~-g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 343 (636)
... ......+.+|+..... +..++ ...|..+.-.+..... +...-..+...++..+...|..-+.....
T Consensus 326 lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~---~r~~a~~l~~e~f~~s~k~~~~kl~~~~~ 402 (568)
T KOG2396|consen 326 LERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNE---AREVAVKLTTELFRDSGKMWQLKLQVLIE 402 (568)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccch---HhHHHHHhhHHHhcchHHHHHHHHHHHHh
Confidence 442 2445556666665553 33443 3344444444443332 22222222223344555555554444442
Q ss_pred cC-CHHH-HHHHHhhcc----CCChhcHHHHHHHHHHcCC-h-HHHHHHHHHHhHcCCCCCHHHH-HHHHHHHHhcCcHH
Q 006672 344 CG-NIEA-ASLVFGETK----EKDLLTWTAMIWGLAIHGR-Y-EQAIQYFKKMMYSGTEPDGTVF-LAILTACWYSGQVK 414 (636)
Q Consensus 344 ~g-~~~~-A~~~~~~~~----~~~~~~~~~li~~~~~~g~-~-~~A~~~~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~ 414 (636)
.. +.+- -.++|.... .+-...|++.. .|+ . ...+.++-.....-..|+..|+ +.++.-+...|-+.
T Consensus 403 s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~ 477 (568)
T KOG2396|consen 403 SKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYK 477 (568)
T ss_pred hcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchH
Confidence 21 1111 112222222 23444565555 122 1 1222222222333355665554 34556666778888
Q ss_pred HHHHHHHHhHhhcCCCCChhHHHHHHHHH---HhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHH
Q 006672 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLL---SRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVA 491 (636)
Q Consensus 415 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~ 491 (636)
+|...+..+.. -.+|+...|..+|..= ..+| +..+.+.|+.|... .. .|+..|......-...|+.+.+-
T Consensus 478 ~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~---fg-~d~~lw~~y~~~e~~~g~~en~~ 550 (568)
T KOG2396|consen 478 KARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALRE---FG-ADSDLWMDYMKEELPLGRPENCG 550 (568)
T ss_pred HHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHH---hC-CChHHHHHHHHhhccCCCccccc
Confidence 88888888764 3456677777777542 3344 77777888777643 22 46677777777777888888777
Q ss_pred HHHHHHHh
Q 006672 492 RVRTLMQR 499 (636)
Q Consensus 492 ~~~~~m~~ 499 (636)
.++.++.+
T Consensus 551 ~~~~ra~k 558 (568)
T KOG2396|consen 551 QIYWRAMK 558 (568)
T ss_pred HHHHHHHH
Confidence 77665543
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=81.14 E-value=41 Score=30.24 Aligned_cols=89 Identities=7% Similarity=-0.039 Sum_probs=53.0
Q ss_pred HHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHH-----HHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHH
Q 006672 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV-----VVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLS 478 (636)
Q Consensus 404 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~ 478 (636)
...+...|++++|..-++.... .|.-+.+.. |.......|.+|+|+..++...+..+ .+..-..-+
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-----~~~~~elrG 166 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-----AAIVAELRG 166 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-----HHHHHHHhh
Confidence 3456677777777777776552 233333333 33456667777777777663221110 122344557
Q ss_pred HHHHHcCChhHHHHHHHHHHhCC
Q 006672 479 NIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
+++...|+-++|..-|++..+.+
T Consensus 167 Dill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 167 DILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hHHHHcCchHHHHHHHHHHHHcc
Confidence 77788888888888888777755
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=80.51 E-value=78 Score=33.01 Aligned_cols=61 Identities=8% Similarity=0.024 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHcC-CCCchhHHHHHhhHHhhcCCHHHHHHHHhhcc
Q 006672 298 TVVSALSACAKVGALEAGVRVHNYISCND-FGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358 (636)
Q Consensus 298 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 358 (636)
.-..+..++-+.|+.++|.+.+.++.+.. ......+...|+..+...+.+.++..++.+-.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 33445555667777788877777776543 22244566777777888888888777776654
|
The molecular function of this protein is uncertain. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=80.48 E-value=2.5 Score=25.08 Aligned_cols=28 Identities=14% Similarity=0.235 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 473 SYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 473 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
++..++.+|.+.|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3567888999999999999999988764
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=80.43 E-value=8.9 Score=28.59 Aligned_cols=49 Identities=6% Similarity=-0.067 Sum_probs=24.8
Q ss_pred hcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHH
Q 006672 409 YSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQ 457 (636)
Q Consensus 409 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (636)
+....++|+..|....+...-.|+ -.+..+++.+|...|++.+++++-.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666555542222222 2344555566666666666555544
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=80.10 E-value=26 Score=29.89 Aligned_cols=78 Identities=13% Similarity=0.237 Sum_probs=46.8
Q ss_pred hHHHHHHHHhhcCCChHHHHHHhccCC---------CCCcchHHHHHHHHHhCCC-chHHHHHHHHhHHCCCCCCcccHH
Q 006672 64 RITTQLISSASLHKSIDYALSIFDHFT---------PKNLHIFNVLIRGLAENSH-FQSCISHFVFMLRLSVRPNRLTYP 133 (636)
Q Consensus 64 ~~~~~li~~~~~~g~~~~A~~~f~~~~---------~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~ 133 (636)
...|+++...+.-+++....++++.+. ..+-.+|++++.+.++..- ---+..+|..|.+.+.+++..-|.
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 346777777777777777777666553 1234456666666654443 334556666666655666666666
Q ss_pred HHHHHHHc
Q 006672 134 FVSKSVAS 141 (636)
Q Consensus 134 ~ll~~~~~ 141 (636)
.++.++.+
T Consensus 120 ~li~~~l~ 127 (145)
T PF13762_consen 120 CLIKAALR 127 (145)
T ss_pred HHHHHHHc
Confidence 66666544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 55.6 bits (132), Expect = 4e-08
Identities = 18/178 (10%), Positives = 55/178 (30%), Gaps = 8/178 (4%)
Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
+ P + + L + + ++ + + + +
Sbjct: 83 TRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQ 142
Query: 180 TRGAFKVFD---ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVAS 232
A + +K K ++ ++N ++ G ++ G ++ V + M+ ++ S
Sbjct: 143 LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202
Query: 233 WVSLIDGFMRKGDLKKAGE-LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
+ + + R+ E EQM ++G+ + L ++
Sbjct: 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKP 260
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 5e-05
Identities = 41/273 (15%), Positives = 89/273 (32%), Gaps = 63/273 (23%)
Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA-----LNFFDSMRF 425
+ I G ++ SG T +A+ Y Q K+ LN +
Sbjct: 152 NVLIDG-----------VLGSGK----TW-VALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 426 DYFIEPSVK-HHTVVVNLLSRVGQDSQGYQNS---QNSFTKLLQLKPKHPSSYVLLSNIY 481
+ +E K + + N SR S Q +LL+ KP + + ++L N+
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP-YENCLLVLLNVQ 254
Query: 482 AAEGRWK--DVARVRTLMQRRSIK-----KDPGWSYIEVNGHVHRFEAGGHKLAKEIHSK 534
A+ W ++ + L+ R + ++I ++ H +
Sbjct: 255 NAK-AWNAFNL-SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT----------PDE 302
Query: 535 LEDIMAGAREQGYMPGTEWVLHNIKEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKL 594
++ ++ +++ ++ E L + +L++ I+ T K +
Sbjct: 303 VKSLLL-----------KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL-ATWDNWKHV 350
Query: 595 TICGDCHSLMKYASKISQREIVLRDTRFHYFKD 627
+C L + S + + R F
Sbjct: 351 ----NCDKLTT-IIESSLNVLEPAEYR-KMFDR 377
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 8e-05
Identities = 35/264 (13%), Positives = 82/264 (31%), Gaps = 20/264 (7%)
Query: 215 LRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
+ +A + P+++V V L ++ + + + + + + +
Sbjct: 19 INEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASH 78
Query: 275 GEAEKALAMFFQMLDAGVRANDFTV-VSALSACAKVGALEAGVRV-HNYISCNDFGLKGA 332
+ +A + + V + T + A S +A +R H S +
Sbjct: 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQ 138
Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKD---LLTWTAMIWGLAIHG--RYEQAIQYFKK 387
I K ++ A + +++D LT A W G + + A F++
Sbjct: 139 I-------LLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQE 191
Query: 388 MMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
M P + G+ + A ++ H ++NL+
Sbjct: 192 MA-DKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEA-----LDKDSGHPETLINLVVLSQ 245
Query: 448 QDSQGYQNSQNSFTKLLQLKPKHP 471
+ + + ++L HP
Sbjct: 246 HLGKPPEVTNRYLSQLKDAHRSHP 269
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 2e-04
Identities = 41/336 (12%), Positives = 97/336 (28%), Gaps = 56/336 (16%)
Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSE--------SVLLWNVLINGCSKIGYLRKAVEL 221
LA + G+ A + + E + E S++ W +G L
Sbjct: 57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIY 116
Query: 222 FGMM----PKKNVASWVSLIDGFMRKGD-LKKAGELFEQMPEKGVVSWTAMINGFSQNGE 276
+ K + + + +G K G E+ V + + +N E
Sbjct: 117 VDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGG---NQNERAKVCFEKALEKKPKNPE 173
Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
LA+ LD + + A+ + A+ ++ ++ LK +
Sbjct: 174 FTSGLAIASYRLDNWPPSQN-----AIDPLRQ--AIR--------LNPDNQYLKVLLALK 218
Query: 337 LVDMYAKCGNIEAASLVFG---ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393
L M + + E + ++AI+ KK +
Sbjct: 219 LHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY-- 276
Query: 394 EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY 453
P+ + C Y +V +N ++ + + +
Sbjct: 277 IPNNAYLHCQI-GCCYRAKVFQVMNLRENGMYGK-------------------RKLLELI 316
Query: 454 QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKD 489
++ K + +L++++A ++++
Sbjct: 317 GHAVAHLKKADEANDNLFRVCSILASLHALADQYEE 352
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 34/344 (9%), Positives = 93/344 (27%), Gaps = 96/344 (27%)
Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
+ + + AD + + + E + ++ ++ + + + G K +
Sbjct: 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLIS 362
Query: 223 G----MMPKKNVASWVSLIDGFMRKGDLKKAGELFE---QMPEKGVVSWTAMINGFSQNG 275
P+ +W+++ ++ + +A F M + +W + F+ G
Sbjct: 363 NDLVDRHPE-KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEG 421
Query: 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT 335
E ++A++ + A + ++ G
Sbjct: 422 EHDQAISAYTT---------------AARLFQGT------HLPYLFL-----------GM 449
Query: 336 ALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIH--GRYEQAIQYFKK--- 387
+ + GNI A+ + D L + G+ + AI +F+
Sbjct: 450 QHMQL----GNILLANEYLQSSYALFQYDPLLLNEL--GVVAFNKSDMQTAINHFQNALL 503
Query: 388 --MMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
E W + L + +
Sbjct: 504 LVKKTQSNEKP-----------WAATWANLG------------------------HAYRK 528
Query: 446 VGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKD 489
+ Y + ++ + L L + + ++ +Y +
Sbjct: 529 LKM----YDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGL 568
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 8e-04
Identities = 18/117 (15%), Positives = 40/117 (34%), Gaps = 31/117 (26%)
Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435
G+ QA+ YF++ I L ++ + Y+ K+
Sbjct: 18 GQNGQAVSYFRQ--------------TI----------ALNIDRTEM----YYWTNVDKN 49
Query: 436 HTVVVNLLSRVG---QDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKD 489
+ L + + + ++ Y + + +LLQ P + + + G+ KD
Sbjct: 50 SEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKD 106
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 636 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.85 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.85 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.83 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.81 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.8 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.79 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.78 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.78 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.77 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.76 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.76 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.75 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.74 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.73 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.73 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.73 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.72 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.72 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.69 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.67 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.67 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.66 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.64 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.63 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.62 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.56 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.54 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.54 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.53 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.53 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.52 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.52 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.52 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.52 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.52 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.51 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.51 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.51 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.51 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.5 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.5 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.49 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.48 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.48 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.46 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.46 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.45 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.44 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.44 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.44 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.42 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.37 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.36 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.36 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.36 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.34 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.28 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.28 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.28 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.28 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.23 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.23 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.22 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.2 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.19 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.18 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.17 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.17 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.15 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.12 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.12 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.11 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.09 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.02 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.98 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.98 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.98 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.96 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.95 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.94 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.92 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.91 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.91 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.91 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.9 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.9 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.86 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.85 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.83 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.82 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.81 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.81 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.79 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.78 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.77 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.77 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.76 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.76 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.73 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.71 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.71 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.69 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.68 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.68 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.68 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.67 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.65 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.65 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.64 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.62 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.6 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.6 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.59 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.58 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.57 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.56 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.56 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.54 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.53 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.52 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.48 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.48 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.47 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.45 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.39 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.38 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.38 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.38 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.37 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.36 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.36 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.36 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.36 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.36 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.33 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.33 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.33 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.32 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.31 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.31 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.31 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.31 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.29 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.29 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.28 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.27 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.26 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.24 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.23 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.23 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.21 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.2 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.19 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.18 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.17 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.16 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.15 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.15 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.14 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.11 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.11 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.1 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.1 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.09 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.09 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.06 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.05 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.03 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.03 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.01 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.01 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.0 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.99 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.99 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.91 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.91 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.88 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.84 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.71 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.7 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.7 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.66 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.64 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.62 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.6 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.59 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.59 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.56 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.56 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.54 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.54 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.32 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.24 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.19 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.18 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.08 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.07 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.01 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.95 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.9 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.89 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.88 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.62 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.4 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.22 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.21 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.16 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.92 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.76 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.73 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.25 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.21 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.21 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.02 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.82 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 94.79 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.25 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.21 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.39 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.28 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.83 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 92.48 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 92.41 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 92.31 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.39 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 90.54 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 90.51 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 90.41 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 89.69 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.28 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 88.42 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 87.77 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 87.57 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 87.21 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 86.92 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 85.71 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 85.55 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 85.3 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 84.94 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 84.73 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 84.66 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 84.43 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 84.37 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 83.97 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 83.68 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 83.2 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 82.27 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 82.03 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 81.77 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 81.6 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-38 Score=344.01 Aligned_cols=284 Identities=11% Similarity=0.055 Sum_probs=143.9
Q ss_pred HHhcCChHHHHHHHhhCCC--CChHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHH
Q 006672 209 CSKIGYLRKAVELFGMMPK--KNVASWVSLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMINGFSQNGEAEKALAM 283 (636)
Q Consensus 209 ~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l 283 (636)
|.+.|++++|+++|+++.. ++..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|..+
T Consensus 282 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (597)
T 2xpi_A 282 TSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLI 361 (597)
T ss_dssp TTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHH
T ss_pred HcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3344445555555555543 4445555555555555555555555554431 2344455555555555555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---C
Q 006672 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---K 360 (636)
Q Consensus 284 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~ 360 (636)
|+++.+.. +.+..++..+...|.+.|++++|.++|+.+.+.. +.+..+++.++.+|.+.|++++|.++|+++.+ .
T Consensus 362 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 439 (597)
T 2xpi_A 362 SNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG 439 (597)
T ss_dssp HHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT
T ss_pred HHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 55554321 3344455555555555555555555555555432 33444555555555555555555555554432 2
Q ss_pred ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhc---CCCCC--hhH
Q 006672 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY---FIEPS--VKH 435 (636)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~--~~~ 435 (636)
+..+|+.++.+|.+.|++++|+++|+++.+.. ..+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+
T Consensus 440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~ 518 (597)
T 2xpi_A 440 THLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518 (597)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHH
Confidence 44455555555555555555555555555421 1124455555555555555555555555554311 33444 445
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 436 HTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
|..++.+|.+.|++++|.+.++++. +++|+++.+|..++.+|.+.|++++|.+.++++.+
T Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 519 WANLGHAYRKLKMYDAAIDALNQGL----LLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH----HHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH----HhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 5555555555555555555555333 23455555555555555555555555555555554
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-38 Score=346.18 Aligned_cols=452 Identities=12% Similarity=0.029 Sum_probs=357.6
Q ss_pred HHhcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHH
Q 006672 38 IHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHF 117 (636)
Q Consensus 38 l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 117 (636)
...+..+....++|......+...++.+ .....+.+.|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 107 (597)
T 2xpi_A 30 YMTPPSMGALNANNSNSQLSTLTISPMT--YLANNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVG 107 (597)
T ss_dssp ---------------CTTSCGGGGCGGG--GGC---------------------CHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCCccHHHHhhccccccccceeechhh--hhcccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 3333334444444444433333222222 12334567888889999999998899999999999999999999999999
Q ss_pred HHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC-CC---
Q 006672 118 VFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP-EK--- 193 (636)
Q Consensus 118 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~--- 193 (636)
++|.. ..||..++..+..+|...|++++|..+|+.+... ++++.+++.++.+|.++|++++|.++|+++. ..
T Consensus 108 ~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 183 (597)
T 2xpi_A 108 EKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDE 183 (597)
T ss_dssp HHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---
T ss_pred HHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccc
Confidence 99985 5688899999999999999999999999988653 6889999999999999999999999999543 22
Q ss_pred -----------CCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChHHHH-------------------------
Q 006672 194 -----------NKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK--K-NVASWV------------------------- 234 (636)
Q Consensus 194 -----------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~------------------------- 234 (636)
+.+++..+|+.++.+|.+.|++++|+++|++|.. | +...+.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 263 (597)
T 2xpi_A 184 KNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTY 263 (597)
T ss_dssp -------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHH
T ss_pred cccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCccc
Confidence 2334689999999999999999999999999973 2 223332
Q ss_pred -------------HHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 006672 235 -------------SLIDGFMRKGDLKKAGELFEQMPE--KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299 (636)
Q Consensus 235 -------------~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 299 (636)
.++.+|.+.|++++|.++|+++.+ +++.+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 342 (597)
T 2xpi_A 264 SKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVY 342 (597)
T ss_dssp HGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTH
T ss_pred ccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHH
Confidence 235567788999999999999987 789999999999999999999999999999865 4477889
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcC
Q 006672 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHG 376 (636)
Q Consensus 300 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 376 (636)
..++.++...|++++|.++++.+.+.. +.+..+++.++.+|.++|++++|.++|+++.+ .+..+|+.++.+|.+.|
T Consensus 343 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 421 (597)
T 2xpi_A 343 PLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEG 421 (597)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999998664 67889999999999999999999999998764 56789999999999999
Q ss_pred ChHHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHH
Q 006672 377 RYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN 455 (636)
Q Consensus 377 ~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 455 (636)
++++|+++|+++.+. .| +..++..++.+|.+.|++++|.++|+++.+. .+.++.+|..++.+|.+.|++++|.++
T Consensus 422 ~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 497 (597)
T 2xpi_A 422 EHDQAISAYTTAARL--FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINH 497 (597)
T ss_dssp CHHHHHHHHHHHHHT--TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 999999999999984 44 5789999999999999999999999999862 244688999999999999999999999
Q ss_pred HHHHHHHHhc--cCCCC-chhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 456 SQNSFTKLLQ--LKPKH-PSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 456 ~~~~~~~~~~--l~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
|+++.+..-+ .+|.+ ..+|..++.+|.+.|++++|.++++++.+.+
T Consensus 498 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 498 FQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 9988765332 25654 6799999999999999999999999998865
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-26 Score=237.36 Aligned_cols=373 Identities=13% Similarity=0.119 Sum_probs=292.2
Q ss_pred HHHHHhCCCchHHHHHHHHhHHCCCCCCccc-HHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 006672 101 IRGLAENSHFQSCISHFVFMLRLSVRPNRLT-YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179 (636)
Q Consensus 101 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 179 (636)
...+.+.|++++|+..|+.+.+. .|+... +..+...+...|+++.|...++..++.. +.+..+|..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 34456677777777777777663 355443 3334455667777777777777777654 4566777778888888888
Q ss_pred hHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCC---CChHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 006672 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK---KNVASWVSLIDGFMRKGDLKKAGELFEQM 256 (636)
Q Consensus 180 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 256 (636)
+++|...|+++.... +.+..+|..+..++.+.|++++|++.|+++.. .+...+..+...+...|++++|.+.|+++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 888888887776543 44566777888888888888888888877652 33456677778888888888888888876
Q ss_pred CC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhH
Q 006672 257 PE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333 (636)
Q Consensus 257 ~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 333 (636)
.. .+..+|+.+...|.+.|++++|+..|+++.+.+ +.+...+..+...+...|++++|...+..+.+.. |.+..+
T Consensus 162 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 239 (388)
T 1w3b_A 162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHH
Confidence 53 346789999999999999999999999998864 3456778888888899999999999999888765 556788
Q ss_pred HHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhc
Q 006672 334 GTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410 (636)
Q Consensus 334 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 410 (636)
+..+...|.+.|++++|...|+++.+ .+..+|..+...+.+.|++++|++.|+++.+. .+++..++..+...+...
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHc
Confidence 88999999999999999999988764 35678999999999999999999999999884 233467888999999999
Q ss_pred CcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCC
Q 006672 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGR 486 (636)
Q Consensus 411 g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~ 486 (636)
|++++|...++++.+ ..+.+...+..++.+|.+.|++++|.+.++++. +++|.++.+|..++.++...|+
T Consensus 319 g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~----~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 319 GNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI----RISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH----TTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999875 223457889999999999999999999998654 6799999999999998887664
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-26 Score=234.37 Aligned_cols=353 Identities=11% Similarity=0.075 Sum_probs=312.7
Q ss_pred HHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCCh
Q 006672 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215 (636)
Q Consensus 136 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 215 (636)
...+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++...... +.+..+|..+...+.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 345678899999999999998874 4556778888889999999999999998877655 77889999999999999999
Q ss_pred HHHHHHHhhCC---CCChHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006672 216 RKAVELFGMMP---KKNVASWVSLIDGFMRKGDLKKAGELFEQMPE--K-GVVSWTAMINGFSQNGEAEKALAMFFQMLD 289 (636)
Q Consensus 216 ~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 289 (636)
++|++.|+++. +.+...+..+..++.+.|++++|...|+++.+ | +...+..+...|...|++++|.+.|+++.+
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999999886 34556899999999999999999999998763 3 356788899999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHH
Q 006672 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWT 366 (636)
Q Consensus 290 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~ 366 (636)
.. +.+..++..+...+...|++++|...++.+++.. +.+...+..+...+...|++++|...|++... .+..+|.
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 241 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHH
Confidence 63 4467889999999999999999999999999876 56788899999999999999999999997764 4678999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh
Q 006672 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445 (636)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~ 445 (636)
.+...|...|++++|++.|+++.+ ..|+ ..++..+..++...|++++|.+.|+++.+. .+++...+..++.++.+
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHH
Confidence 999999999999999999999998 5665 668999999999999999999999999862 35578899999999999
Q ss_pred cCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 446 VGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 446 ~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
.|++++|.+.++++ +++.|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 318 ~g~~~~A~~~~~~a----l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 318 QGNIEEAVRLYRKA----LEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTCHHHHHHHHHHH----TTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHH----HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999855 4778999999999999999999999999999999874
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.7e-27 Score=246.12 Aligned_cols=197 Identities=15% Similarity=0.170 Sum_probs=174.7
Q ss_pred HHHHHhhCCCCC-----hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------cHH
Q 006672 249 AGELFEQMPEKG-----VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA---------LEA 314 (636)
Q Consensus 249 A~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~ 314 (636)
+..+.+++.++. ...++.+|++|++.|++++|+++|++|.+.|+.||..||+++|.+|+..+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 344445554332 346888999999999999999999999999999999999999999987664 678
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC----CChhcHHHHHHHHHHcCChHHHHHHHHHHhH
Q 006672 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE----KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (636)
Q Consensus 315 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 390 (636)
|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+ ||..+||++|.+|++.|+.++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999975 7999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhc
Q 006672 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446 (636)
Q Consensus 391 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~ 446 (636)
.|+.||..||+.|+.+|++.|++++|.+++++|++ .+..|+..+|+.+++.|...
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHSH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999994 89999999999999998763
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-27 Score=248.74 Aligned_cols=198 Identities=12% Similarity=0.051 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHhCCCCCh-hHHHHHHHHhhcCCChHHHHHHhccCC----CCCcchHHHHHHHHHhCCC---------c
Q 006672 45 KQLRQIHAQIILHNLFASS-RITTQLISSASLHKSIDYALSIFDHFT----PKNLHIFNVLIRGLAENSH---------F 110 (636)
Q Consensus 45 ~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~---------~ 110 (636)
..+..+...+.+.+..+.+ .+++.+|++|++.|++++|.++|++|. .||.++||+||.+|++.+. .
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3344555666666654433 457788888888888888888888876 6788888888888877654 4
Q ss_pred hHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhC
Q 006672 111 QSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190 (636)
Q Consensus 111 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 190 (636)
++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|+.|.+.|+.||..+||+||.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 67888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC----CCChHHHHHHHHHHHh
Q 006672 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMR 242 (636)
Q Consensus 191 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~ 242 (636)
.+.|+.||..+|++||.+|++.|+.++|.++|++|. .|+..||+.++..|..
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 888888888888888888888888888888888776 4666777777666654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=8e-24 Score=226.11 Aligned_cols=424 Identities=9% Similarity=-0.000 Sum_probs=282.2
Q ss_pred HHHHHHHhhcCCChHHHHHHhccCC--CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCC-cccHHHHHHHHHcc
Q 006672 66 TTQLISSASLHKSIDYALSIFDHFT--PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN-RLTYPFVSKSVASL 142 (636)
Q Consensus 66 ~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~ 142 (636)
+..+...|.+.|++++|...|+++. .|+..+|..+..++.+.|++++|+..|+++.+.+ |+ ..++..+..++...
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555443 2455555555555555555555555555555432 32 23444455555555
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHH---HhcCChHHHH
Q 006672 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC---SKIGYLRKAV 219 (636)
Q Consensus 143 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~---~~~g~~~~A~ 219 (636)
|++++|...++.+.+.+ +++......++..+.+......+.+.+..+...+..|+...++...... ........+.
T Consensus 87 g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred hhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 55555555555555543 2233333333333333333333333332222111111111111000000 0001111111
Q ss_pred HHHhhCC----------CCChHHHHHHHHHHHh---cCCHHHHHHHHhhCCC----------------C-ChhhHHHHHH
Q 006672 220 ELFGMMP----------KKNVASWVSLIDGFMR---KGDLKKAGELFEQMPE----------------K-GVVSWTAMIN 269 (636)
Q Consensus 220 ~~~~~m~----------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~~li~ 269 (636)
..+.... ..+...+..+...+.. .|++++|...|+++.. + +..+|..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 1111111 1124455555555554 8999999999987654 1 2567888999
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHH
Q 006672 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349 (636)
Q Consensus 270 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 349 (636)
.+...|++++|+..|+++.+.. |+...+..+..++...|++++|...++.+.+.. +.+..++..+...|...|++++
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 9999999999999999999864 347888889999999999999999999998765 5678889999999999999999
Q ss_pred HHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHh
Q 006672 350 ASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRF 425 (636)
Q Consensus 350 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 425 (636)
|...|+++.+ .+..+|..+...|...|++++|+..++++.+ ..|+ ..++..+...+...|++++|...++++.+
T Consensus 323 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 323 AGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR--KFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp HHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999998764 4677899999999999999999999999988 4454 56888889999999999999999999875
Q ss_pred hcCCCCC----hhHHHHHHHHHHh---cCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHH
Q 006672 426 DYFIEPS----VKHHTVVVNLLSR---VGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQ 498 (636)
Q Consensus 426 ~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 498 (636)
...-.++ ...+..++..|.+ .|++++|.+.++++. +++|.++.++..++.+|...|++++|...++++.
T Consensus 401 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKAS----KLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHH----HhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3322232 4489999999999 999999999998665 5689999999999999999999999999999998
Q ss_pred hCC
Q 006672 499 RRS 501 (636)
Q Consensus 499 ~~g 501 (636)
+..
T Consensus 477 ~~~ 479 (514)
T 2gw1_A 477 DLA 479 (514)
T ss_dssp HHC
T ss_pred Hhc
Confidence 854
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-22 Score=211.45 Aligned_cols=322 Identities=12% Similarity=0.064 Sum_probs=225.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC---CCChHHHHHHHHHH
Q 006672 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP---KKNVASWVSLIDGF 240 (636)
Q Consensus 164 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~ 240 (636)
...+..+...|.+.|++++|..+|+++.+.. +.+..+|..+..++.+.|++++|+..|+++. +.+..++..+..+|
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 3444455555555555555555555444332 3344555555555555555555555555443 22344555555555
Q ss_pred HhcCCHHHHHHHHhhCCCCC---h---hhHHHH------------HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006672 241 MRKGDLKKAGELFEQMPEKG---V---VSWTAM------------INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302 (636)
Q Consensus 241 ~~~g~~~~A~~~~~~~~~~~---~---~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 302 (636)
.+.|++++|...|+++...+ . ..|..+ ...+.+.|++++|+..|+++.+.. +.+..++..+
T Consensus 105 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 183 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELR 183 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 55555555555555544322 2 333333 445778888888888888888753 4467778888
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC--C-ChhcHHHH-----------
Q 006672 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--K-DLLTWTAM----------- 368 (636)
Q Consensus 303 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l----------- 368 (636)
..++...|++++|...+..+.+.. +.+..++..++..|.+.|++++|...|+++.+ | +...+..+
T Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 262 (450)
T 2y4t_A 184 AECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIE 262 (450)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888764 56678888888888889999999888888764 2 34455444
Q ss_pred -HHHHHHcCChHHHHHHHHHHhHcCCCCC-----HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHH
Q 006672 369 -IWGLAIHGRYEQAIQYFKKMMYSGTEPD-----GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442 (636)
Q Consensus 369 -i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 442 (636)
+..+...|++++|+..|+++.+ ..|+ ...+..+..++.+.|++++|...++++.+. .+.+...|..++.+
T Consensus 263 ~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~ 338 (450)
T 2y4t_A 263 SAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEA 338 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 7889999999999999999998 5565 346778888999999999999999998752 23468899999999
Q ss_pred HHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHH------------HHHcC-----ChhHHHHHHHH
Q 006672 443 LSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNI------------YAAEG-----RWKDVARVRTL 496 (636)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~ 496 (636)
|...|++++|.+.++++ ++++|.++.++..++.+ |...| +.+++.+.+++
T Consensus 339 ~~~~~~~~~A~~~~~~a----l~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 339 YLIEEMYDEAIQDYETA----QEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHTTCHHHHHHHHHHH----HTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHH----HHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 99999999999999855 47899999999999844 55555 45566777765
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.7e-22 Score=213.17 Aligned_cols=432 Identities=9% Similarity=-0.070 Sum_probs=319.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCC---CCCcchHHHHHHHHHhCCCc
Q 006672 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT---PKNLHIFNVLIRGLAENSHF 110 (636)
Q Consensus 34 ~~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~ 110 (636)
....+...+++++|...+..+++.. |++.++..+...|.+.|++++|...|+++. +.+..+|..+..++...|++
T Consensus 12 ~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 89 (514)
T 2gw1_A 12 KGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKF 89 (514)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhH
Confidence 4455566678999999999999986 689999999999999999999999998664 56778999999999999999
Q ss_pred hHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHH---HHHHhcCChHHHHHHH
Q 006672 111 QSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLA---DMYVQLGKTRGAFKVF 187 (636)
Q Consensus 111 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li---~~~~~~g~~~~A~~~~ 187 (636)
++|+..|+++.+.+. ++......++..+........+.+.+..+.+.+..|+....+.-. ...........+...+
T Consensus 90 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (514)
T 2gw1_A 90 ADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFF 168 (514)
T ss_dssp HHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHH
Confidence 999999999998652 344555555555444333333333332222221111111111000 0001111111222222
Q ss_pred hhCCCC------CCCCChhhHHHHHHHHHh---cCChHHHHHHHhhCCC-----C------------ChHHHHHHHHHHH
Q 006672 188 DETPEK------NKSESVLLWNVLINGCSK---IGYLRKAVELFGMMPK-----K------------NVASWVSLIDGFM 241 (636)
Q Consensus 188 ~~m~~~------~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~------------~~~~~~~li~~~~ 241 (636)
...... .-+.+...+......+.. .|++++|+..|+++.. . +..++..+...+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (514)
T 2gw1_A 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKF 248 (514)
T ss_dssp TTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHH
Confidence 222111 002234555555555554 8999999999888754 1 3457888889999
Q ss_pred hcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Q 006672 242 RKGDLKKAGELFEQMPE--KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319 (636)
Q Consensus 242 ~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 319 (636)
..|++++|...|+++.. ++..+|..+...|...|++++|+..|+++.... +.+...+..+...+...|++++|...+
T Consensus 249 ~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (514)
T 2gw1_A 249 LKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDF 327 (514)
T ss_dssp HSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999988652 337789999999999999999999999998764 446678888999999999999999999
Q ss_pred HHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC
Q 006672 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396 (636)
Q Consensus 320 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 396 (636)
..+.+.. +.+...+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+. .|+
T Consensus 328 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~ 404 (514)
T 2gw1_A 328 DKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL--ENK 404 (514)
T ss_dssp HHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHT
T ss_pred HHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--hhc
Confidence 9999865 55778899999999999999999999998764 46778999999999999999999999999873 333
Q ss_pred -------HHHHHHHHHHHHh---cCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc
Q 006672 397 -------GTVFLAILTACWY---SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQL 466 (636)
Q Consensus 397 -------~~t~~~ll~a~~~---~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l 466 (636)
...+..+...+.. .|++++|...++.+... .+.+...+..++.+|.+.|++++|.+.++++. ++
T Consensus 405 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~----~~ 478 (514)
T 2gw1_A 405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DPRSEQAKIGLAQMKLQQEDIDEAITLFEESA----DL 478 (514)
T ss_dssp SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HH
T ss_pred cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH----Hh
Confidence 2378888899999 99999999999999852 23457888999999999999999999998655 67
Q ss_pred CCCCchhHHHHH
Q 006672 467 KPKHPSSYVLLS 478 (636)
Q Consensus 467 ~p~~~~~~~~l~ 478 (636)
+|.++..+..+.
T Consensus 479 ~~~~~~~~~~~~ 490 (514)
T 2gw1_A 479 ARTMEEKLQAIT 490 (514)
T ss_dssp CSSHHHHHHHHH
T ss_pred ccccHHHHHHHH
Confidence 898887777663
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.7e-22 Score=213.08 Aligned_cols=423 Identities=10% Similarity=0.034 Sum_probs=323.9
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCC-CcccHHHHHHH
Q 006672 63 SRITTQLISSASLHKSIDYALSIFDHFT---PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP-NRLTYPFVSKS 138 (636)
Q Consensus 63 ~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~ 138 (636)
...+..+...+.+.|++++|...|+++. +.++.+|..+...|.+.|++++|+..|+++.+.+ | +..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHH
Confidence 3456677778888899999999888654 5677888888889999999999999999888743 4 45567777788
Q ss_pred HHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCC--CCCChhhHHHHHHHHHhcCChH
Q 006672 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN--KSESVLLWNVLINGCSKIGYLR 216 (636)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~ 216 (636)
+...|++++|...++ .+.. .|+ ..+..+..+...+....|...++.+.... ..+........+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHH-HHhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 888899999998886 3322 222 22233445566667788888888876531 0122223344556667778888
Q ss_pred HHHHHHhhCCCCChH---HHHHHHHHHHhc--------CCHHHHHHHHhhCCCCC----------hhhHHHHHHHHHhCC
Q 006672 217 KAVELFGMMPKKNVA---SWVSLIDGFMRK--------GDLKKAGELFEQMPEKG----------VVSWTAMINGFSQNG 275 (636)
Q Consensus 217 ~A~~~~~~m~~~~~~---~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~----------~~~~~~li~~~~~~g 275 (636)
.+...+......+.. ....+...+... |++++|..+|+++.+.+ ..+|..+...+...|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 888888777755443 444555444333 47899999999876533 235777888899999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHh
Q 006672 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355 (636)
Q Consensus 276 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 355 (636)
++++|...|+++.+. .|+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|...|++++|...|+
T Consensus 258 ~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 258 NLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp CHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999999985 4667888888999999999999999999999875 5678899999999999999999999999
Q ss_pred hccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC
Q 006672 356 ETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431 (636)
Q Consensus 356 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 431 (636)
++.+ .+...|..+...|...|++++|+..|+++.+. .|+ ...+..+...+...|++++|...|+++.+...-.+
T Consensus 335 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 335 KAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 8764 45678999999999999999999999999984 455 56888889999999999999999999875321111
Q ss_pred ----ChhHHHHHHHHHHhc----------CCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHH
Q 006672 432 ----SVKHHTVVVNLLSRV----------GQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLM 497 (636)
Q Consensus 432 ----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 497 (636)
....+..+..+|.+. |++++|...++++. +++|.++.+|..++.+|...|++++|.+.++++
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~----~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKAC----ELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 223355667788888 99999999998665 568999999999999999999999999999999
Q ss_pred HhCC
Q 006672 498 QRRS 501 (636)
Q Consensus 498 ~~~g 501 (636)
.+..
T Consensus 489 l~~~ 492 (537)
T 3fp2_A 489 AILA 492 (537)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 8854
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-21 Score=204.99 Aligned_cols=302 Identities=13% Similarity=0.075 Sum_probs=256.1
Q ss_pred HHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC---CCChHHHHHHHHHHHhcCCHHHHHHHHhhCCC---C
Q 006672 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP---KKNVASWVSLIDGFMRKGDLKKAGELFEQMPE---K 259 (636)
Q Consensus 186 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~ 259 (636)
.|.+..... +.+...|..+...+.+.|++++|+.+|+++. +.+..++..+..+|.+.|++++|...|+++.+ .
T Consensus 14 ~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 92 (450)
T 2y4t_A 14 GTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD 92 (450)
T ss_dssp ----------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 333443333 6678899999999999999999999999886 35678999999999999999999999998764 3
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH----HHHHHH------------HHHHHhcCCcHHHHHHHHHHH
Q 006672 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND----FTVVSA------------LSACAKVGALEAGVRVHNYIS 323 (636)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~l------------l~~~~~~~~~~~a~~~~~~~~ 323 (636)
+..+|..++..|.+.|++++|...|+++.+. .|+. ..+..+ ...+...|++++|...++.+.
T Consensus 93 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 170 (450)
T 2y4t_A 93 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL 170 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4788999999999999999999999999975 3443 444444 444888999999999999999
Q ss_pred HcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHH-H
Q 006672 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-V 399 (636)
Q Consensus 324 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t 399 (636)
+.. +.+..++..++.+|.+.|++++|.+.|+++.+ .+..+|..++..|...|++++|+..|+++.+ ..|+.. .
T Consensus 171 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~ 247 (450)
T 2y4t_A 171 EVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRC 247 (450)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred HhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChHHH
Confidence 865 66888999999999999999999999998864 5788999999999999999999999999998 566643 4
Q ss_pred HHHH------------HHHHHhcCcHHHHHHHHHHhHhhcCCCCC-----hhHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 006672 400 FLAI------------LTACWYSGQVKLALNFFDSMRFDYFIEPS-----VKHHTVVVNLLSRVGQDSQGYQNSQNSFTK 462 (636)
Q Consensus 400 ~~~l------------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 462 (636)
+..+ ..+|.+.|++++|..+|+++.+ +.|+ ..+|..++.++.+.|++++|.+.++++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~-- 322 (450)
T 2y4t_A 248 FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK---TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL-- 322 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--
Confidence 4433 7889999999999999999986 3454 4588999999999999999999999665
Q ss_pred HhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 463 LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 463 ~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
+++|+++.+|..++.+|...|++++|...++++.+.
T Consensus 323 --~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 323 --QMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp --HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred --HhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 568999999999999999999999999999999884
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-19 Score=194.66 Aligned_cols=427 Identities=8% Similarity=-0.029 Sum_probs=318.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCC---CCCcchHHHHHHHHHhCCCc
Q 006672 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT---PKNLHIFNVLIRGLAENSHF 110 (636)
Q Consensus 34 ~~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~ 110 (636)
....+...++++.|...+..+++.. +.++.++..+...|.+.|++++|.+.|++.. +.+..+|..+...+...|++
T Consensus 31 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 109 (537)
T 3fp2_A 31 RGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNF 109 (537)
T ss_dssp HHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCH
Confidence 4455556677999999999999975 3478899999999999999999999998764 56788899999999999999
Q ss_pred hHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCC--CCChhHHHHHHHHHHhcCChHHHHHHHh
Q 006672 111 QSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV--EYDAFVRVHLADMYVQLGKTRGAFKVFD 188 (636)
Q Consensus 111 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~ 188 (636)
++|+..|+.+. ..|+... ..+..+...+....+...++.+++... .+........+..|....+.+.+...+.
T Consensus 110 ~~A~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 110 TDAMFDLSVLS---LNGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184 (537)
T ss_dssp HHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred HHHHHHHHHHh---cCCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence 99999997443 2333221 123334444555778888888765311 1111122344556777888888888777
Q ss_pred hCCCCCCCCChhhHHHHHHHHHh--------cCChHHHHHHHhhCCCC--C--------hHHHHHHHHHHHhcCCHHHHH
Q 006672 189 ETPEKNKSESVLLWNVLINGCSK--------IGYLRKAVELFGMMPKK--N--------VASWVSLIDGFMRKGDLKKAG 250 (636)
Q Consensus 189 ~m~~~~~~~~~~~~~~li~~~~~--------~g~~~~A~~~~~~m~~~--~--------~~~~~~li~~~~~~g~~~~A~ 250 (636)
...... +.....+..+...+.. .|++++|+.+|+++... + ..++..+...+...|++++|.
T Consensus 185 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 263 (537)
T 3fp2_A 185 TSSNYD-TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQ 263 (537)
T ss_dssp CCCSSC-SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hccccc-cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHH
Confidence 766332 1111233333333322 24789999999988742 2 225667778889999999999
Q ss_pred HHHhhCC--CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCC
Q 006672 251 ELFEQMP--EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328 (636)
Q Consensus 251 ~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 328 (636)
..|++.. .++..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +
T Consensus 264 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~ 341 (537)
T 3fp2_A 264 VLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-P 341 (537)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-C
Confidence 9999875 3457789999999999999999999999998864 4467889999999999999999999999999875 5
Q ss_pred CchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCC-C----CHHHH
Q 006672 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE-P----DGTVF 400 (636)
Q Consensus 329 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p----~~~t~ 400 (636)
.+...+..+...|...|++++|...|+++.+ .+...|..+...+...|++++|+..|+++.+.... + ....+
T Consensus 342 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 421 (537)
T 3fp2_A 342 ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPL 421 (537)
T ss_dssp TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHH
Confidence 5678899999999999999999999998764 45678999999999999999999999998873211 1 11224
Q ss_pred HHHHHHHHhc----------CcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCC
Q 006672 401 LAILTACWYS----------GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH 470 (636)
Q Consensus 401 ~~ll~a~~~~----------g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~ 470 (636)
......+... |++++|...|+++.+. .+.+...+..++.+|.+.|++++|.+.++++. ++.|.+
T Consensus 422 ~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al----~~~~~~ 495 (537)
T 3fp2_A 422 IGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSA----ILARTM 495 (537)
T ss_dssp HHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHC--C
T ss_pred HHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH----HhCCCc
Confidence 4445667777 9999999999999862 23457889999999999999999999998665 567876
Q ss_pred chhHH
Q 006672 471 PSSYV 475 (636)
Q Consensus 471 ~~~~~ 475 (636)
.....
T Consensus 496 ~~~~~ 500 (537)
T 3fp2_A 496 DEKLQ 500 (537)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.2e-18 Score=174.35 Aligned_cols=296 Identities=10% Similarity=0.076 Sum_probs=198.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhc
Q 006672 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRK 243 (636)
Q Consensus 164 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 243 (636)
+..+..+...+.+.|++++|...|+++.+.. +.+..+|..+...+...|++++|+..|+++...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------------- 66 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--------------- 66 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------------
Confidence 3455566666666677777776666665443 444556666666666666666666655554310
Q ss_pred CCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC----CHHHHHHH------------HHHHH
Q 006672 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA----NDFTVVSA------------LSACA 307 (636)
Q Consensus 244 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p----~~~t~~~l------------l~~~~ 307 (636)
...+...|..+...|...|++++|...|+++.+. .| +...+..+ ...+.
T Consensus 67 -------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 131 (359)
T 3ieg_A 67 -------------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAF 131 (359)
T ss_dssp -------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112344555555555555555555555555543 22 22222222 45666
Q ss_pred hcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHH
Q 006672 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQY 384 (636)
Q Consensus 308 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 384 (636)
..|++++|...+..+.+.. +.+..++..+...|...|++++|...++++.+ .+..+|..+...|...|++++|+..
T Consensus 132 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 210 (359)
T 3ieg_A 132 DGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSE 210 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777777777654 45667777788888888888888888877664 3566788888888888888888888
Q ss_pred HHHHhHcCCCCCH-HHHH------------HHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-h----hHHHHHHHHHHhc
Q 006672 385 FKKMMYSGTEPDG-TVFL------------AILTACWYSGQVKLALNFFDSMRFDYFIEPS-V----KHHTVVVNLLSRV 446 (636)
Q Consensus 385 ~~~m~~~g~~p~~-~t~~------------~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~----~~~~~l~~~~~~~ 446 (636)
|++..+ ..|+. ..+. .+...+...|++++|...++++.+. .|+ . ..+..++.+|.+.
T Consensus 211 ~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~ 285 (359)
T 3ieg_A 211 VRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKD 285 (359)
T ss_dssp HHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHh--hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHc
Confidence 888877 44442 2222 2255678889999999999988752 233 2 3355678889999
Q ss_pred CCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 447 GQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 447 g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
|++++|.+.++++. +++|.++.+|..++.+|...|++++|.+.++++.+.
T Consensus 286 ~~~~~A~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 286 EKPVEAIRICSEVL----QMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp TCHHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHH----HhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999999988665 458888999999999999999999999999988874
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.7e-19 Score=178.69 Aligned_cols=325 Identities=11% Similarity=-0.005 Sum_probs=244.9
Q ss_pred cccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHH
Q 006672 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208 (636)
Q Consensus 129 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 208 (636)
...+..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|++..+.. +.+...|..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 3456677788899999999999999999975 4568899999999999999999999999987654 5577889999999
Q ss_pred HHhcCChHHHHHHHhhCCCCCh------HHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHH
Q 006672 209 CSKIGYLRKAVELFGMMPKKNV------ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282 (636)
Q Consensus 209 ~~~~g~~~~A~~~~~~m~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 282 (636)
+...|++++|+..|+++...++ ..+..+...+. ...+..+...+...|++++|+.
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------~~~~~~~a~~~~~~~~~~~A~~ 141 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-------------------MQRLRSQALDAFDGADYTAAIT 141 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-------------------HHHHHHHHHHHHHccCHHHHHH
Confidence 9999999999999988864332 23333321110 1123344566777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---
Q 006672 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--- 359 (636)
Q Consensus 283 l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--- 359 (636)
.|+++.+.. +.+...+..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|...|++..+
T Consensus 142 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 219 (359)
T 3ieg_A 142 FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219 (359)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 777776643 3455666667777777777777777777777654 55667777777777777777777777776654
Q ss_pred CChhcHH------------HHHHHHHHcCChHHHHHHHHHHhHcCCCCCHH-----HHHHHHHHHHhcCcHHHHHHHHHH
Q 006672 360 KDLLTWT------------AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-----VFLAILTACWYSGQVKLALNFFDS 422 (636)
Q Consensus 360 ~~~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-----t~~~ll~a~~~~g~~~~a~~~~~~ 422 (636)
.+...|. .+...+...|++++|+..++++.+. .|+.. .+..+..++...|++++|...++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 297 (359)
T 3ieg_A 220 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSE 297 (359)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 2222332 3366788999999999999999984 45532 344567789999999999999999
Q ss_pred hHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHc
Q 006672 423 MRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAE 484 (636)
Q Consensus 423 m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~ 484 (636)
..+. .+.++..+..++.+|.+.|++++|.+.++++ ++++|+++..+..+..++...
T Consensus 298 ~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a----~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 298 VLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAA----QEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH----HTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHH----HhcCCCChHHHHHHHHHHHHH
Confidence 9862 2346889999999999999999999999855 478999999888887776543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-18 Score=174.74 Aligned_cols=379 Identities=13% Similarity=0.138 Sum_probs=189.4
Q ss_pred hcCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHH
Q 006672 74 SLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153 (636)
Q Consensus 74 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 153 (636)
-+.|++++|.+.+++++.|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|...+.
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 36888999999999996654 8999999999999999999999763 577899999999999999999999888
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHH
Q 006672 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233 (636)
Q Consensus 154 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 233 (636)
...+. .+++.+.+.|+.+|.++|+++++.++++ .|+..+|+.+...|...|++++|..+|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhH
Confidence 77774 5567889999999999999999998885 467789999999999999999999999988 489
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcH
Q 006672 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313 (636)
Q Consensus 234 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 313 (636)
..++.++.+.|++++|.+.++++. ++.+|..++.+|...|+++.|......+. +.|+ -...++..|.+.|.++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad--~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHH--HHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHh--hHHHHHHHHHHCCCHH
Confidence 999999999999999999999993 78999999999999999999966554322 3444 3557889999999999
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHhhHHhh--cCCHHHHHHHHhhccC--------CChhcHHHHHHHHHHcCChHHHHH
Q 006672 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAK--CGNIEAASLVFGETKE--------KDLLTWTAMIWGLAIHGRYEQAIQ 383 (636)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~ 383 (636)
++..+++..+... +....+|+-|...|++ -+++.+..+.|..-.. .+...|..+...|.+.++++.|..
T Consensus 225 Eai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 225 ELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 9999999998766 6678888888888876 4577788888865443 367799999999999999999877
Q ss_pred HHHHHhHc-CCCCCHHHHHHHHHHHHhcCcHHHHHHHHH--------HhHhhcCCCCChhHHHHHHHHHHhcCCchHHHH
Q 006672 384 YFKKMMYS-GTEPDGTVFLAILTACWYSGQVKLALNFFD--------SMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ 454 (636)
Q Consensus 384 ~~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~--------~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 454 (636)
. |.+. ...-+...|..++.--....-+-+|..++- .+.. .+.|... .+-.+..+.+.|.+.-...
T Consensus 304 t---m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~~l~~ll~--~l~~~ld-~~r~v~~~~~~~~l~l~~~ 377 (449)
T 1b89_A 304 T---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLM--VLSPRLD-HTRAVNYFSKVKQLPLVKP 377 (449)
T ss_dssp H---HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHH--HHGGGCC-HHHHHHHHHHTTCTTTTHH
T ss_pred H---HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHHHHHHHHH--HHHhccC-cHHHHHHHHHcCCcHHHHH
Confidence 4 3332 121223344333332222222223333221 1100 0112111 1445666777777777777
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHH
Q 006672 455 NSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVR 494 (636)
Q Consensus 455 ~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 494 (636)
++..+. +-++..+-.+|-..|....+++.-....
T Consensus 378 yl~~v~------~~n~~~vnealn~l~ieeed~~~lr~si 411 (449)
T 1b89_A 378 YLRSVQ------NHNNKSVNESLNNLFITEEDYQALRTSI 411 (449)
T ss_dssp HHHHHH------TTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHH------HhhHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 765333 2345667778888899988887644433
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-17 Score=167.32 Aligned_cols=280 Identities=11% Similarity=0.007 Sum_probs=184.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhhCC---CCChHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHh
Q 006672 200 LLWNVLINGCSKIGYLRKAVELFGMMP---KKNVASWVSLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMINGFSQ 273 (636)
Q Consensus 200 ~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 273 (636)
..+..+...+...|++++|+++|+++. +.+...+..++..+.+.|++++|...|+++.+ .+...|..+...|..
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 102 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLM 102 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 333334444444444444444444433 11222333344444444555555554444332 235566667777777
Q ss_pred CC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHH
Q 006672 274 NG-EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352 (636)
Q Consensus 274 ~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 352 (636)
.| ++++|...|++..+.. +.+...+..+...+...|++++|...+..+.+.. +.+...+..+...|...|++++|..
T Consensus 103 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (330)
T 3hym_B 103 VGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAER 180 (330)
T ss_dssp SCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHH
Confidence 77 7777777777776543 3345566666777777777777777777776654 3445566667777788888888888
Q ss_pred HHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCC--------CCCHHHHHHHHHHHHhcCcHHHHHHHHH
Q 006672 353 VFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT--------EPDGTVFLAILTACWYSGQVKLALNFFD 421 (636)
Q Consensus 353 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--------~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 421 (636)
.|++..+ .+...|..+...+...|++++|+..++++.+... ..+..++..+..++...|++++|...++
T Consensus 181 ~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (330)
T 3hym_B 181 FFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHR 260 (330)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 8877664 3566788888888888888888888888876311 2224678888888889999999999999
Q ss_pred HhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHH-HcCCh
Q 006672 422 SMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYA-AEGRW 487 (636)
Q Consensus 422 ~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~-~~g~~ 487 (636)
+..+. .+.+...+..++.+|.+.|++++|.+.+++ .++++|+++..+..++.++. ..|+.
T Consensus 261 ~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~----al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 261 QALVL--IPQNASTYSAIGYIHSLMGNFENAVDYFHT----ALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHH--STTCSHHHHHHHHHHHHHTCHHHHHHHHHT----TTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHhh--CccchHHHHHHHHHHHHhccHHHHHHHHHH----HHccCCCchHHHHHHHHHHHHHhCch
Confidence 88752 233577888899999999999999988874 45778988889998888884 45543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.80 E-value=6.1e-16 Score=165.68 Aligned_cols=418 Identities=12% Similarity=0.076 Sum_probs=289.6
Q ss_pred HHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCC
Q 006672 52 AQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT---PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128 (636)
Q Consensus 52 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 128 (636)
+..++.. +-+..+|..++. +.+.|+++.|+.+|+++. +.+...|..++..+.+.|++++|..+|++..+. .|+
T Consensus 3 e~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~ 78 (530)
T 2ooe_A 3 EKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLH 78 (530)
T ss_dssp HHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCC
T ss_pred hhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCC
Confidence 4444443 347778988998 477899999999999775 456778999999999999999999999999874 477
Q ss_pred cccHHHHHHHH-HccCChHHHHH----HHHHHHHh-CCCC-ChhHHHHHHHHHHh---------cCChHHHHHHHhhCCC
Q 006672 129 RLTYPFVSKSV-ASLSLLSLGRG----LHCLIVKS-GVEY-DAFVRVHLADMYVQ---------LGKTRGAFKVFDETPE 192 (636)
Q Consensus 129 ~~t~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~ 192 (636)
...|...+... ...|+.+.|++ +|+..++. |..| +...|...+....+ .|+++.|..+|++..+
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 66666666533 34577776665 77776654 5443 45678877777655 6889999999998886
Q ss_pred CCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhh-------CC------CC
Q 006672 193 KNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ-------MP------EK 259 (636)
Q Consensus 193 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------~~------~~ 259 (636)
.........|..........|. ..+..++. .+.++++.|..++.. +. .+
T Consensus 159 ~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 159 NPMINIEQLWRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred chhhhHHHHHHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 2111112344333221111111 11111111 022334445444432 11 11
Q ss_pred C--------hhhHHHHHHHHHhC----CCh----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCcH---
Q 006672 260 G--------VVSWTAMINGFSQN----GEA----EKALAMFFQMLDAGVRANDFTVVSALSACAK-------VGALE--- 313 (636)
Q Consensus 260 ~--------~~~~~~li~~~~~~----g~~----~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~-------~~~~~--- 313 (636)
+ ...|...+.-...+ ++. ++|..+|++..... +-+...|......+.. .|+++
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 1 24566555433332 232 47788898888752 4466777777777664 68887
Q ss_pred ----HHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC--C-Ch-hcHHHHHHHHHHcCChHHHHHHH
Q 006672 314 ----AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--K-DL-LTWTAMIWGLAIHGRYEQAIQYF 385 (636)
Q Consensus 314 ----~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~g~~~~A~~~~ 385 (636)
+|..+++..++.-.|.+..++..++..+.+.|++++|..+|+++.+ | +. ..|..++..+.+.|+.++|.++|
T Consensus 300 ~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 379 (530)
T 2ooe_A 300 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 379 (530)
T ss_dssp HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8999999988633456788999999999999999999999998764 3 33 47999999888999999999999
Q ss_pred HHHhHcCCCCC-HHHHHHHHHH-HHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 006672 386 KKMMYSGTEPD-GTVFLAILTA-CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKL 463 (636)
Q Consensus 386 ~~m~~~g~~p~-~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 463 (636)
++..+. .|+ ...+...... +...|+.++|..+|+...+.. +.++..|..+++.+.+.|+.++|..+|+++.
T Consensus 380 ~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al--- 452 (530)
T 2ooe_A 380 KKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVL--- 452 (530)
T ss_dssp HHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHH---
T ss_pred HHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHH---
Confidence 999884 443 2333332222 335899999999999988632 3357889999999999999999999999765
Q ss_pred hccCCCCch----hHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 464 LQLKPKHPS----SYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 464 ~~l~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
+..|.++. .|...+......|+.+.+..+.+++.+.
T Consensus 453 -~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 453 -TSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp -HSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred -hccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34454444 7888888888899999999999988774
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.7e-17 Score=162.00 Aligned_cols=266 Identities=13% Similarity=0.103 Sum_probs=230.0
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006672 227 KKNVASWVSLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303 (636)
Q Consensus 227 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 303 (636)
..+...+..+...+...|++++|.++|+++.. .+...+..++..+...|++++|..+++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 35667788889999999999999999998764 335677788899999999999999999999863 44667888888
Q ss_pred HHHHhcC-CcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChH
Q 006672 304 SACAKVG-ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYE 379 (636)
Q Consensus 304 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 379 (636)
..+...| ++++|...++.+.+.. +.+...+..+...|...|++++|...|+++.+ .+...|..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 9999999 9999999999999765 56788899999999999999999999998875 35678888999999999999
Q ss_pred HHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcC-------CCCChhHHHHHHHHHHhcCCchH
Q 006672 380 QAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYF-------IEPSVKHHTVVVNLLSRVGQDSQ 451 (636)
Q Consensus 380 ~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~ 451 (636)
+|+..++++.+ ..|+ ...+..+...+...|++++|...++++.+... .+.....+..++.+|.+.|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999998 4555 67888899999999999999999999875321 13446799999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 452 GYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 452 A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
|.+.++++. ++.|.++.+|..++.+|...|++++|.+.++++.+.
T Consensus 255 A~~~~~~a~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 255 ALDYHRQAL----VLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHH----HHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHH----hhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 999998665 568999999999999999999999999999988764
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.78 E-value=9.7e-18 Score=170.60 Aligned_cols=253 Identities=11% Similarity=0.059 Sum_probs=173.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006672 233 WVSLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309 (636)
Q Consensus 233 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 309 (636)
+..+...|.+.|++++|...|+++.+ .+..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+...
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~ 145 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE 145 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 33444444444444444444444321 223445555555555555555555555555432 23444555555555555
Q ss_pred CCcHHHHHHHHHHHHcCCCCchhHHH----------------HHhhHHhhcCCHHHHHHHHhhccC--C---ChhcHHHH
Q 006672 310 GALEAGVRVHNYISCNDFGLKGAIGT----------------ALVDMYAKCGNIEAASLVFGETKE--K---DLLTWTAM 368 (636)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~~~~~~~~----------------~li~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~l 368 (636)
|++++|...+..+.+.. +.+...+. .+...+ ..|++++|...|+++.+ | +..+|..+
T Consensus 146 g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l 223 (368)
T 1fch_A 146 SLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 223 (368)
T ss_dssp TCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHH
Confidence 55555555555555433 11111111 233333 88899999999988764 3 46788999
Q ss_pred HHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcC
Q 006672 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447 (636)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g 447 (636)
...|...|++++|+..|+++.+ ..|+ ..++..+...+...|++++|...|+++.+. .+.+...+..++.+|.+.|
T Consensus 224 ~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g 299 (368)
T 1fch_A 224 GVLFNLSGEYDKAVDCFTAALS--VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLG 299 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCC
Confidence 9999999999999999999988 4555 678889999999999999999999998852 2345788999999999999
Q ss_pred CchHHHHHHHHHHHHHhccCCCC-----------chhHHHHHHHHHHcCChhHHHHHHHH
Q 006672 448 QDSQGYQNSQNSFTKLLQLKPKH-----------PSSYVLLSNIYAAEGRWKDVARVRTL 496 (636)
Q Consensus 448 ~~~~A~~~~~~~~~~~~~l~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~ 496 (636)
++++|.+.++++.+ +.|++ ..+|..++.+|...|++++|..++++
T Consensus 300 ~~~~A~~~~~~al~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 300 AHREAVEHFLEALN----MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp CHHHHHHHHHHHHH----HHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CHHHHHHHHHHHHH----hCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 99999999997764 44554 78999999999999999999988764
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-15 Score=161.87 Aligned_cols=322 Identities=11% Similarity=-0.001 Sum_probs=187.5
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHh----cC
Q 006672 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQ----LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK----IG 213 (636)
Q Consensus 142 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g 213 (636)
.++++.|...++...+.| ++..+..|..+|.. .+++++|.+.|++..+.| +..++..+...|.. .+
T Consensus 92 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 165 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTR 165 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 444444444444444432 33334444444444 445555555555444322 33444444444444 44
Q ss_pred ChHHHHHHHhhCCC-CChHHHHHHHHHHHh----cCCHHHHHHHHhhCCCC-ChhhHHHHHHHHHh----CCChHHHHHH
Q 006672 214 YLRKAVELFGMMPK-KNVASWVSLIDGFMR----KGDLKKAGELFEQMPEK-GVVSWTAMINGFSQ----NGEAEKALAM 283 (636)
Q Consensus 214 ~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l 283 (636)
++++|++.|++..+ .+...+..|..+|.. .++.++|.+.|++..+. +..++..+...|.. .+++++|..+
T Consensus 166 d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 245 (490)
T 2xm6_A 166 DYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVL 245 (490)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 55555555544332 344455555555555 55666666666554332 34555556666654 5667777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHh----cCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhc-----CCHHHHHHHH
Q 006672 284 FFQMLDAGVRANDFTVVSALSACAK----VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC-----GNIEAASLVF 354 (636)
Q Consensus 284 ~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~ 354 (636)
|++..+.| +...+..+...+.. .++.++|...++...+.+ ++..+..|..+|... ++.++|...|
T Consensus 246 ~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 246 FSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 76666543 33444445555554 566777777777666543 344555666666665 6777777777
Q ss_pred hhccC-CChhcHHHHHHHHHHcC---ChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHhHhh
Q 006672 355 GETKE-KDLLTWTAMIWGLAIHG---RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY----SGQVKLALNFFDSMRFD 426 (636)
Q Consensus 355 ~~~~~-~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~ 426 (636)
++..+ .+...+..+...|...| +.++|++.|++..+.| +...+..+...|.. .+++++|...|++..+
T Consensus 320 ~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~- 395 (490)
T 2xm6_A 320 TKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE- 395 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-
T ss_pred HHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh-
Confidence 76654 35566677777776655 6778888888877753 45666667777766 6788888888887764
Q ss_pred cCCCCChhHHHHHHHHHHh----cCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHH
Q 006672 427 YFIEPSVKHHTVVVNLLSR----VGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAA 483 (636)
Q Consensus 427 ~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~ 483 (636)
.+ ++..+..+..+|.+ .+++++|.+.|+++.+.... .|.++.....|+.++..
T Consensus 396 ~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~-~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 396 QG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN-LFGTENRNITEKKLTAK 452 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC-HHHHHHHHHHHTTSCHH
T ss_pred CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC-CcCCHHHHHHHHhcCHh
Confidence 22 46677778888877 78888888888876654210 03355566666655543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-15 Score=158.87 Aligned_cols=361 Identities=12% Similarity=0.020 Sum_probs=296.6
Q ss_pred HHHHHHhHHCCCCCCcccHHHHHHHHHc----cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChHHHHH
Q 006672 114 ISHFVFMLRLSVRPNRLTYPFVSKSVAS----LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQ----LGKTRGAFK 185 (636)
Q Consensus 114 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~ 185 (636)
+..+....+.| +...+..+-..+.. .++++.|...++...+.| ++..+..|...|.. .++.++|.+
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 44444444432 44555555555555 788888999998888764 56678888889998 899999999
Q ss_pred HHhhCCCCCCCCChhhHHHHHHHHHh----cCChHHHHHHHhhCCC-CChHHHHHHHHHHHh----cCCHHHHHHHHhhC
Q 006672 186 VFDETPEKNKSESVLLWNVLINGCSK----IGYLRKAVELFGMMPK-KNVASWVSLIDGFMR----KGDLKKAGELFEQM 256 (636)
Q Consensus 186 ~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~~ 256 (636)
.|++..+.| +..++..|...|.. .+++++|+..|++... .++..+..|..+|.. .++.++|.+.|++.
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a 177 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA 177 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 999887644 67788888888988 8899999999998764 467788889999987 88999999999987
Q ss_pred CC-CChhhHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCcHHHHHHHHHHHHcCC
Q 006672 257 PE-KGVVSWTAMINGFSQ----NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK----VGALEAGVRVHNYISCNDF 327 (636)
Q Consensus 257 ~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~ 327 (636)
.+ .+..++..+...|.. .+++++|+.+|++..+.| +...+..+...+.. .++.++|...++...+.+
T Consensus 178 ~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~- 253 (490)
T 2xm6_A 178 AEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG- 253 (490)
T ss_dssp HHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT-
T ss_pred HHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-
Confidence 64 457788899999988 899999999999999875 55667777777775 789999999999998765
Q ss_pred CCchhHHHHHhhHHhh----cCCHHHHHHHHhhccC-CChhcHHHHHHHHHHc-----CChHHHHHHHHHHhHcCCCCCH
Q 006672 328 GLKGAIGTALVDMYAK----CGNIEAASLVFGETKE-KDLLTWTAMIWGLAIH-----GRYEQAIQYFKKMMYSGTEPDG 397 (636)
Q Consensus 328 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~ 397 (636)
+...+..|..+|.. .++.++|...|++..+ .+..++..+...|... +++++|+..|++..+.| +.
T Consensus 254 --~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~ 328 (490)
T 2xm6_A 254 --NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DA 328 (490)
T ss_dssp --CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CH
T ss_pred --CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CH
Confidence 45677778888887 8999999999999876 4677888888888887 89999999999999864 44
Q ss_pred HHHHHHHHHHHhcC---cHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh----cCCchHHHHHHHHHHHHHhccCCCC
Q 006672 398 TVFLAILTACWYSG---QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR----VGQDSQGYQNSQNSFTKLLQLKPKH 470 (636)
Q Consensus 398 ~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~l~p~~ 470 (636)
..+..+...|...| +.++|.++|++..+ . .++..+..+..+|.. .+++++|.+.++++.+. .+
T Consensus 329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~------~~ 398 (490)
T 2xm6_A 329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAA-K---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ------GL 398 (490)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TC
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC------CC
Confidence 56667777777656 88999999999985 2 467888999999998 89999999999987753 36
Q ss_pred chhHHHHHHHHHH----cCChhHHHHHHHHHHhCCC
Q 006672 471 PSSYVLLSNIYAA----EGRWKDVARVRTLMQRRSI 502 (636)
Q Consensus 471 ~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~ 502 (636)
+..+..|+.+|.. .+++++|...+++..+.|.
T Consensus 399 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 399 SAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 7899999999999 8999999999999999774
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-17 Score=165.93 Aligned_cols=293 Identities=10% Similarity=0.060 Sum_probs=139.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCCchH
Q 006672 33 HIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQS 112 (636)
Q Consensus 33 ~~~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 112 (636)
....+|..++++++|.+..+++ +++.+|..|..++.+.|++++|.+.|.+. +|...|..++.++...|++++
T Consensus 8 a~~~ll~~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~Ee 79 (449)
T 1b89_A 8 AVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEE 79 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHH
Confidence 4556778888899999999988 23459999999999999999999999764 677799999999999999999
Q ss_pred HHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC
Q 006672 113 CISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPE 192 (636)
Q Consensus 113 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 192 (636)
|+..++..++. .++..+.+.++.++.+.|++.++.++++ .|+..+|+.+.+.|...|++++|...|..+
T Consensus 80 Ai~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 80 LVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp -------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--
T ss_pred HHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 99977776663 4567888999999999999999988874 477789999999999999999999999987
Q ss_pred CCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHH
Q 006672 193 KNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272 (636)
Q Consensus 193 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 272 (636)
..|..++.++.+.|++++|++.++++ .++.+|..++.+|...|+++.|......+. ..+.-...++..|.
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Ye 218 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQ 218 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHH
Confidence 38999999999999999999999999 489999999999999999999988877655 44444556889999
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCcHHHHHHHHHHHHcCCCC------chhHHHHHhhHHhhc
Q 006672 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK--VGALEAGVRVHNYISCNDFGL------KGAIGTALVDMYAKC 344 (636)
Q Consensus 273 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~ 344 (636)
+.|++++|+.+++...... +--...|+-+.-++++ .+++.+..+.|.. +.++++ +..+|..++-.|.+-
T Consensus 219 k~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~ 295 (449)
T 1b89_A 219 DRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKY 295 (449)
T ss_dssp HTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999988654 4445566666555554 3455555555442 223333 567888999999999
Q ss_pred CCHHHHHHHHhhc
Q 006672 345 GNIEAASLVFGET 357 (636)
Q Consensus 345 g~~~~A~~~~~~~ 357 (636)
++++.|..+.-+-
T Consensus 296 ~e~d~A~~tm~~h 308 (449)
T 1b89_A 296 EEYDNAIITMMNH 308 (449)
T ss_dssp TCHHHHHHHHHHS
T ss_pred chHHHHHHHHHhC
Confidence 9999988765443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.8e-17 Score=170.97 Aligned_cols=366 Identities=11% Similarity=-0.049 Sum_probs=236.3
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHHHh-----C---CCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC------
Q 006672 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKS-----G---VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK------ 193 (636)
Q Consensus 128 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------ 193 (636)
....|+.+-..+...|++++|.+.|++.++. + -+....+|+.+..+|...|++++|...+++..+.
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3556888888888999999999999988763 1 1223567888999999999999999998765321
Q ss_pred -CCCCChhhHHHHHHHHHhc--CChHHHHHHHhhCCC---CChHHHHHHHHH---HHhcCCHHHHHHHHhhCC---CCCh
Q 006672 194 -NKSESVLLWNVLINGCSKI--GYLRKAVELFGMMPK---KNVASWVSLIDG---FMRKGDLKKAGELFEQMP---EKGV 261 (636)
Q Consensus 194 -~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~---~~~~~~~~li~~---~~~~g~~~~A~~~~~~~~---~~~~ 261 (636)
.......++..+..++... +++++|++.|++..+ .++..+..+..+ +...++.++|++.|++.. ..+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 1122345566666566554 468999999988762 345555555544 345567777777777654 2345
Q ss_pred hhHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHH
Q 006672 262 VSWTAMINGFSQ----NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTAL 337 (636)
Q Consensus 262 ~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 337 (636)
.++..+...+.. .|++++|...+++..... +.+...+..+...+...|+++.|...+..+.+.. |.+..++..+
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 287 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHH
Confidence 666666555544 467788999998887753 4566778888889999999999999999988765 5567777777
Q ss_pred hhHHhhc-------------------CCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCC
Q 006672 338 VDMYAKC-------------------GNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395 (636)
Q Consensus 338 i~~~~~~-------------------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 395 (636)
...|... +..+.|...|+...+ .+..+|..+...|...|++++|+..|++.++....|
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~ 367 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP 367 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC
Confidence 7766432 234566666666543 456688888899999999999999999988843333
Q ss_pred CHH--HHHHHHH-HHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCch
Q 006672 396 DGT--VFLAILT-ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPS 472 (636)
Q Consensus 396 ~~~--t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~ 472 (636)
... .+..+.. .....|+.++|+..|++..+ +.|+...... .....++..++.++.+|.++.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~-------------~~~~l~~~~~~~l~~~p~~~~ 431 (472)
T 4g1t_A 368 VAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEK-------------MKDKLQKIAKMRLSKNGADSE 431 (472)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHH-------------HHHHHHHHHHHHHHHCC-CTT
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHH-------------HHHHHHHHHHHHHHhCCCCHH
Confidence 221 2233322 33467889999999988875 5565432221 222233444566778999999
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCeeeEE
Q 006672 473 SYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYI 511 (636)
Q Consensus 473 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~i 511 (636)
+|..|+.+|...|++++|++.+++..+.|...+.+.+|+
T Consensus 432 ~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 432 ALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 999999999999999999999999999876555555553
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.4e-16 Score=150.46 Aligned_cols=248 Identities=13% Similarity=0.023 Sum_probs=188.4
Q ss_pred HHhcCCHHHHHHHHhhCCCCC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHH
Q 006672 240 FMRKGDLKKAGELFEQMPEKG----VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315 (636)
Q Consensus 240 ~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 315 (636)
....|++..|+..++.....+ ......+..+|...|++++|+..++. .-+|+..++..+...+...++.+.|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 344567777777766655433 22344556777777777777765543 1355666777777777777778888
Q ss_pred HHHHHHHHHcCC-CCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCC
Q 006672 316 VRVHNYISCNDF-GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394 (636)
Q Consensus 316 ~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 394 (636)
.+.++.+...+. |.+...+..+...|...|++++|.+.+++ ..+...+..++..|.+.|+.++|++.|+++.+. .
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 888877776553 44666777788888999999999999988 567788999999999999999999999999984 5
Q ss_pred CCHHHH---HHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCc
Q 006672 395 PDGTVF---LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHP 471 (636)
Q Consensus 395 p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~ 471 (636)
|+.... ...+..+...|++++|..+|+++.+. .+.++..++.++.++.+.|++++|.+.++++. +++|.++
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al----~~~p~~~ 234 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEAL----DKDSGHP 234 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTCH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCCCCH
Confidence 664311 12223344568999999999999863 35678899999999999999999999998655 6699999
Q ss_pred hhHHHHHHHHHHcCChhH-HHHHHHHHHhCC
Q 006672 472 SSYVLLSNIYAAEGRWKD-VARVRTLMQRRS 501 (636)
Q Consensus 472 ~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~g 501 (636)
.++..++.++...|++++ +.++++++.+..
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 999999999999999976 578889888744
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.3e-17 Score=166.62 Aligned_cols=258 Identities=9% Similarity=0.030 Sum_probs=175.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006672 233 WVSLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309 (636)
Q Consensus 233 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 309 (636)
+..+...+.+.|++++|...|+++.. .+..+|..+...|.+.|++++|+..|+++.+.. +.+..++..+..++...
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 146 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNT 146 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHcc
Confidence 44444444455555555555544432 234556666666666666666666666665542 33455566666666666
Q ss_pred CCcHHHHHHHHHHHHcCCC---------CchhHHHHHhhHHhhcCCHHHHHHHHhhccC--C---ChhcHHHHHHHHHHc
Q 006672 310 GALEAGVRVHNYISCNDFG---------LKGAIGTALVDMYAKCGNIEAASLVFGETKE--K---DLLTWTAMIWGLAIH 375 (636)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~ 375 (636)
|++++|...++.+.+.... ....++..+...|.+.|++++|...|+++.+ | +..+|..+...|...
T Consensus 147 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 226 (365)
T 4eqf_A 147 SHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS 226 (365)
T ss_dssp TCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHC
Confidence 6666666666666543210 1123344567888889999999999988774 2 577899999999999
Q ss_pred CChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHH
Q 006672 376 GRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGY 453 (636)
Q Consensus 376 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 453 (636)
|++++|+..|+++.+ ..|+ ..++..+..+|...|++++|...|+++.+ +.| +...|..++.+|.+.|++++|.
T Consensus 227 g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 227 GEFNRAIDAFNAALT--VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALE---IQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999998 4454 67899999999999999999999999986 234 4888999999999999999999
Q ss_pred HHHHHHHHHHhccCC--------CCchhHHHHHHHHHHcCChhHHHHHHHH
Q 006672 454 QNSQNSFTKLLQLKP--------KHPSSYVLLSNIYAAEGRWKDVARVRTL 496 (636)
Q Consensus 454 ~~~~~~~~~~~~l~p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 496 (636)
+.++++.+..-.... .+...|..|+.++...|+.+.+.++.++
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999977654322110 0467899999999999999998887654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.75 E-value=8e-17 Score=163.81 Aligned_cols=284 Identities=14% Similarity=0.054 Sum_probs=216.2
Q ss_pred HhcCChHHHHH-HHhhCCCCCC---CCChhhHHHHHHHHHhcCChHHHHHHHhhCC---CCChHHHHHHHHHHHhcCCHH
Q 006672 175 VQLGKTRGAFK-VFDETPEKNK---SESVLLWNVLINGCSKIGYLRKAVELFGMMP---KKNVASWVSLIDGFMRKGDLK 247 (636)
Q Consensus 175 ~~~g~~~~A~~-~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~ 247 (636)
.-.|++++|.. .|++...... ..+...|..+...+.+.|++++|+..|+++. +.+..++..+...|.+.|+++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHH
Confidence 34577888887 7776554321 1145678888888888888888888888876 345678888888889999999
Q ss_pred HHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHHhc
Q 006672 248 KAGELFEQMPE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS---------------ALSACAKV 309 (636)
Q Consensus 248 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~---------------ll~~~~~~ 309 (636)
+|...|+++.+ .+..+|..+...|...|++++|+..|+++...... +...+.. .+..+...
T Consensus 116 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 116 LAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 99988887653 35778889999999999999999999999875321 1111111 23334488
Q ss_pred CCcHHHHHHHHHHHHcCCCC-chhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHH
Q 006672 310 GALEAGVRVHNYISCNDFGL-KGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYF 385 (636)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 385 (636)
|++++|...+..+.+..... +..++..+...|.+.|++++|...|+++.+ .+..+|..+...|...|++++|+..|
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 274 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAY 274 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999998865221 688999999999999999999999998764 46779999999999999999999999
Q ss_pred HHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCC---------CChhHHHHHHHHHHhcCCchHHHHH
Q 006672 386 KKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE---------PSVKHHTVVVNLLSRVGQDSQGYQN 455 (636)
Q Consensus 386 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~---------p~~~~~~~l~~~~~~~g~~~~A~~~ 455 (636)
+++.+ ..|+ ..++..+..++...|++++|...|+++.+...-. .....|..++.+|.+.|+.++|..+
T Consensus 275 ~~al~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 275 RRALE--LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 99998 4555 6788899999999999999999999987521100 1168899999999999999999999
Q ss_pred HHHHHH
Q 006672 456 SQNSFT 461 (636)
Q Consensus 456 ~~~~~~ 461 (636)
+++..+
T Consensus 353 ~~~~l~ 358 (368)
T 1fch_A 353 DARDLS 358 (368)
T ss_dssp HTTCHH
T ss_pred HHHHHH
Confidence 885543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.7e-17 Score=167.27 Aligned_cols=259 Identities=12% Similarity=0.022 Sum_probs=206.2
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHhhCC---CCChHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHH
Q 006672 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMP---KKNVASWVSLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMIN 269 (636)
Q Consensus 196 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 269 (636)
..+...|..+...+.+.|++++|+..|+++. +.+..++..+..+|.+.|++++|...|+++.+ .+..+|..++.
T Consensus 62 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (365)
T 4eqf_A 62 FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAV 141 (365)
T ss_dssp TTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 3456678888888899999999999988876 35667888899999999999999999988753 34778999999
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCC-CchhHHHHH
Q 006672 270 GFSQNGEAEKALAMFFQMLDAGVRAN-----------DFTVVSALSACAKVGALEAGVRVHNYISCNDFG-LKGAIGTAL 337 (636)
Q Consensus 270 ~~~~~g~~~~A~~l~~~m~~~g~~p~-----------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l 337 (636)
.|...|++++|+..|+++.+.. |+ ...+..+...+...|++++|...++.+.+.... .+..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999999988742 32 222334567788899999999999999987522 168899999
Q ss_pred hhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcH
Q 006672 338 VDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQV 413 (636)
Q Consensus 338 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~ 413 (636)
...|.+.|++++|...|+++.+ .+..+|+.+..+|...|++++|+..|+++.+ ..|+ ..++..+..+|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALE--IQPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHCCCH
Confidence 9999999999999999998764 4678999999999999999999999999998 4566 67888999999999999
Q ss_pred HHHHHHHHHhHhhcCC----------CCChhHHHHHHHHHHhcCCchHHHHHHHH
Q 006672 414 KLALNFFDSMRFDYFI----------EPSVKHHTVVVNLLSRVGQDSQGYQNSQN 458 (636)
Q Consensus 414 ~~a~~~~~~m~~~~~~----------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 458 (636)
++|...|+++.+...- ..+...|..+..++...|+.+.|.+..++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999998752210 01367899999999999999998887663
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-14 Score=155.82 Aligned_cols=378 Identities=10% Similarity=0.019 Sum_probs=255.2
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCC-cccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHH
Q 006672 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN-RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH 169 (636)
Q Consensus 91 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 169 (636)
+.+..+|..++. +.+.|++++|..+|+++.+. .|+ ...|...+..+.+.|+++.|..+|+++++.. |++..|..
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~ 84 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKC 84 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHH
Confidence 447778888887 47788888888888888763 354 4457777777778888888888888887753 56666666
Q ss_pred HHHHH-HhcCChHHHHH----HHhhCCC-CCC-CCChhhHHHHHHHHHh---------cCChHHHHHHHhhCCC-CCh--
Q 006672 170 LADMY-VQLGKTRGAFK----VFDETPE-KNK-SESVLLWNVLINGCSK---------IGYLRKAVELFGMMPK-KNV-- 230 (636)
Q Consensus 170 li~~~-~~~g~~~~A~~----~~~~m~~-~~~-~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~-~~~-- 230 (636)
++... ...|+.++|.+ +|+.... .|. +++...|...+....+ .|++++|..+|++... |+.
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~ 164 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINI 164 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTH
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhH
Confidence 66433 34566666654 5554432 122 2345667666665544 5666677777766553 211
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH------HC---CCCCCH----
Q 006672 231 -ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML------DA---GVRAND---- 296 (636)
Q Consensus 231 -~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~------~~---g~~p~~---- 296 (636)
..|..........|. ..+..++. ...+++..|..++.++. +. .++|+.
T Consensus 165 ~~~~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~ 226 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQE 226 (530)
T ss_dssp HHHHHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCH
T ss_pred HHHHHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhH
Confidence 122222111111110 11111111 12345677777776632 11 134442
Q ss_pred ----HHHHHHHHHHHhc----CCc----HHHHHHHHHHHHcCCCCchhHHHHHhhHHhh-------cCCHH-------HH
Q 006672 297 ----FTVVSALSACAKV----GAL----EAGVRVHNYISCNDFGLKGAIGTALVDMYAK-------CGNIE-------AA 350 (636)
Q Consensus 297 ----~t~~~ll~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A 350 (636)
..|...+...... ++. ..+..+|+.+++.. |.++.+|..++..+.+ .|+++ +|
T Consensus 227 ~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A 305 (530)
T 2ooe_A 227 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 305 (530)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHH
Confidence 3444443322221 232 36777888888764 6678899999888876 79987 89
Q ss_pred HHHHhhccC---C-ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCH--HHHHHHHHHHHhcCcHHHHHHHHHHhH
Q 006672 351 SLVFGETKE---K-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG--TVFLAILTACWYSGQVKLALNFFDSMR 424 (636)
Q Consensus 351 ~~~~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~ 424 (636)
..+|++..+ | +...|..++..+.+.|++++|..+|+++++ ..|+. ..|..++..+.+.|++++|.++|++..
T Consensus 306 ~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 306 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999998764 3 577899999999999999999999999999 66763 478888888889999999999999998
Q ss_pred hhcCCCC-ChhHHHHHHHH-HHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 425 FDYFIEP-SVKHHTVVVNL-LSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 425 ~~~~~~p-~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
+ ..| +...|...+.+ +...|+.++|..+|+++. +..|+++..|..++..+.+.|+.++|..+|++....+
T Consensus 384 ~---~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al----~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 384 E---DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGL----KKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp T---CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHH----HHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred h---ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHH----HHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 5 233 34444433333 346899999999999665 4579999999999999999999999999999998864
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.73 E-value=5.2e-14 Score=156.57 Aligned_cols=373 Identities=9% Similarity=0.102 Sum_probs=212.9
Q ss_pred HHHHHHHhhcCCChHHHHHHhccCC-CC-----CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHH
Q 006672 66 TTQLISSASLHKSIDYALSIFDHFT-PK-----NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139 (636)
Q Consensus 66 ~~~li~~~~~~g~~~~A~~~f~~~~-~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 139 (636)
....+..|+..|.+.+|+++++++. .+ +....|.++....+. +..+..++..+... ....-+...+
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~Ia 1059 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIANIA 1059 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHHHH
Confidence 3455556666666666666666544 11 223455555554444 33444444433321 1123344555
Q ss_pred HccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHH
Q 006672 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219 (636)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 219 (636)
...|.+++|..+|++.. ......+.+ +-..|++++|.++.++.. +..+|..+..++.+.|++++|+
T Consensus 1060 i~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHH
Confidence 66666677766666641 111111222 225566677766666543 3556666777777777777777
Q ss_pred HHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 006672 220 ELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE--KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297 (636)
Q Consensus 220 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 297 (636)
+.|.+. .|...|..++..+.+.|++++|.+.|....+ ++....+.++.+|++.+++++.... .+ .|+..
T Consensus 1126 dsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~f----I~---~~n~a 1196 (1630)
T 1xi4_A 1126 DSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEF----IN---GPNNA 1196 (1630)
T ss_pred HHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHH----Hh---CCCHH
Confidence 776554 5555666667777777777777777654332 2222233466666666666643222 11 33445
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCC
Q 006672 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGR 377 (636)
Q Consensus 298 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 377 (636)
.+..+...|...|++++|..+|..+ ..|..++..|.+.|++++|.+.+++. .+..+|..+..+|...|+
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~E 1265 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKE 1265 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhH
Confidence 5556666666777777777777653 35666777777777777777777665 345666666666666666
Q ss_pred hHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHh--cCCchHHHH
Q 006672 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSR--VGQDSQGYQ 454 (636)
Q Consensus 378 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~--~g~~~~A~~ 454 (636)
+..|...... +..++..+..++..|...|.+++|+.+++... ++.| ....|+-+..+|.+ -+++.++.+
T Consensus 1266 f~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL---~LeraH~gmftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A 1266 FRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred HHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccChhHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 6666655443 22244455566667777777777777776654 2333 24455555555554 345555555
Q ss_pred HHHHHHHHHhccCC-----CCchhHHHHHHHHHHcCChhHHHH
Q 006672 455 NSQNSFTKLLQLKP-----KHPSSYVLLSNIYAAEGRWKDVAR 492 (636)
Q Consensus 455 ~~~~~~~~~~~l~p-----~~~~~~~~l~~~~~~~g~~~~A~~ 492 (636)
+|... +.+.| .+...|.-+...|.+.|+|+.|..
T Consensus 1338 ~f~~r----ini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1338 LFWSR----VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHh----cccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 55421 22223 356678888888888888888874
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-13 Score=152.00 Aligned_cols=404 Identities=12% Similarity=0.070 Sum_probs=302.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhC--CCCChhHHHHHHHHhhcCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCCch
Q 006672 34 IISLIHSSNSTKQLRQIHAQIILHN--LFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQ 111 (636)
Q Consensus 34 ~~~~l~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 111 (636)
.+..+...+.+.++.++++.++..+ +..+....+.|+....+. +........++...-+ ...+...+...|.++
T Consensus 991 ~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyE 1066 (1630)
T 1xi4_A 991 TVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNELFE 1066 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHH
Confidence 3344445566999999999998442 223556777777766665 4455555555444222 455778888999999
Q ss_pred HHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 006672 112 SCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191 (636)
Q Consensus 112 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 191 (636)
+|..+|++... .....+.++. ..++++.|.++.++. .++.+|..+..++.+.|++++|.+.|.+.
T Consensus 1067 EAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A 1067 EAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred HHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence 99999998531 1112222322 677899998888754 34778999999999999999999999664
Q ss_pred CCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCC--CChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHH
Q 006672 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK--KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269 (636)
Q Consensus 192 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 269 (636)
.|...|..++..+.+.|++++|+++|....+ +++...+.++.+|++.+++++..... ..++...|..+..
T Consensus 1132 -----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd 1203 (1630)
T 1xi4_A 1132 -----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGD 1203 (1630)
T ss_pred -----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHH
Confidence 5788899999999999999999999977653 44445556999999999999655443 3556677888999
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHH
Q 006672 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349 (636)
Q Consensus 270 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 349 (636)
.|...|++++|..+|... ..|..+...+.+.|+++.|.+.+... .+..+|..+..++...|++..
T Consensus 1204 ~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~L 1268 (1630)
T 1xi4_A 1204 RCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRL 1268 (1630)
T ss_pred HHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHH
Confidence 999999999999999885 37999999999999999999999876 456888888999999999999
Q ss_pred HHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCH-HHHHHHHHHHH--hcCcHHHHHHHHHHhHhh
Q 006672 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG-TVFLAILTACW--YSGQVKLALNFFDSMRFD 426 (636)
Q Consensus 350 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~--~~g~~~~a~~~~~~m~~~ 426 (636)
|...... ...+...+..++..|...|.+++|+.+++..+. +.|.. ..|.-+...++ +.++..++.++|..-.
T Consensus 1269 A~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaKy~peklmEhlk~f~~ri-- 1343 (1630)
T 1xi4_A 1269 AQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELFWSRV-- 1343 (1630)
T ss_pred HHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--
Confidence 9998775 334556677899999999999999999988876 55553 35544544444 5567777777776432
Q ss_pred cCCCC------ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHH--------hccCCCCchhHHHHHHHHHHcC
Q 006672 427 YFIEP------SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKL--------LQLKPKHPSSYVLLSNIYAAEG 485 (636)
Q Consensus 427 ~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~l~p~~~~~~~~l~~~~~~~g 485 (636)
+++| +...|.-++-+|.+.|+++.|...+-+..... .-..+.|+..|.-.+.-|....
T Consensus 1344 -ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1344 -NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred -ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhC
Confidence 4444 46789999999999999999984433111110 1124667888888888887666
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.6e-15 Score=145.18 Aligned_cols=267 Identities=12% Similarity=0.055 Sum_probs=190.6
Q ss_pred HHhcCChHHHHHHHhhCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHH
Q 006672 209 CSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284 (636)
Q Consensus 209 ~~~~g~~~~A~~~~~~m~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 284 (636)
....|++.+|+..+++....++ .....+..+|...|+++.|...++....++..++..+...+...|+.++|++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l 88 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAEL 88 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 3456666666666666554332 233445667777777777777776654445667777778888888888888888
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC--CC
Q 006672 285 FQMLDAGVRAN-DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--KD 361 (636)
Q Consensus 285 ~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~ 361 (636)
+++...+..|+ ...+..+..++...|++++|.+.++. +.+...+..++..|.+.|+.++|.+.|+++.+ |+
T Consensus 89 ~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~ 162 (291)
T 3mkr_A 89 DREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDED 162 (291)
T ss_dssp HHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC
Confidence 88877665454 44455556777788888888888765 56777888888888888888888888888765 33
Q ss_pred hhcHHHHH----HHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHH
Q 006672 362 LLTWTAMI----WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHT 437 (636)
Q Consensus 362 ~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 437 (636)
.. ...+. ..+...|++++|+.+|+++.+. .+.+...++.+..++.+.|++++|...|+++.+. -+-++.++.
T Consensus 163 ~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~~l~ 238 (291)
T 3mkr_A 163 AT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--DSGHPETLI 238 (291)
T ss_dssp CH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred cH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 22 22222 3333458999999999999985 2335678889999999999999999999998852 233578899
Q ss_pred HHHHHHHhcCCchH-HHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHH
Q 006672 438 VVVNLLSRVGQDSQ-GYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARV 493 (636)
Q Consensus 438 ~l~~~~~~~g~~~~-A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~ 493 (636)
.++..+...|+.++ +.+++++ +++++|+++.+. +...+.+.++++..-
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~----~~~~~P~~~~~~----d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQ----LKDAHRSHPFIK----EYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHH----HHHHCTTCHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHH----HHHhCCCChHHH----HHHHHHHHHHHHHHH
Confidence 99999999999976 4677764 457799887654 345555566655443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.72 E-value=3.2e-16 Score=156.32 Aligned_cols=262 Identities=10% Similarity=-0.006 Sum_probs=178.5
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCh
Q 006672 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA 277 (636)
Q Consensus 198 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 277 (636)
+...|..+...+...|++++|+.+|+++... ...+..+|..+...|...|++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------------------~~~~~~~~~~l~~~~~~~~~~ 71 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA----------------------------APEREEAWRSLGLTQAENEKD 71 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------CTTCHHHHHHHHHHHHHTTCH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh----------------------------CCCCHHHHHHHHHHHHHcCCH
Confidence 3445555566666666666666666554310 011234444445555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHH--------------hh-HHh
Q 006672 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTAL--------------VD-MYA 342 (636)
Q Consensus 278 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~ 342 (636)
++|...|+++.+.. +.+..++..+...+...|++++|...+..+.+.. +.+...+..+ .. .+.
T Consensus 72 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (327)
T 3cv0_A 72 GLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFA 149 (327)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTT
T ss_pred HHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHH
Confidence 55555555554432 2234444445555555555555555555554432 1122222222 33 477
Q ss_pred hcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHH
Q 006672 343 KCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALN 418 (636)
Q Consensus 343 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~ 418 (636)
..|++++|.+.++++.+ .+...|..+...|...|++++|+..++++.+ ..|+ ..++..+...+...|++++|..
T Consensus 150 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~ 227 (327)
T 3cv0_A 150 APNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVE--LRPDDAQLWNKLGATLANGNRPQEALD 227 (327)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 78889999999888764 4677889999999999999999999999988 4454 6688889999999999999999
Q ss_pred HHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCC------------CchhHHHHHHHHHHcCC
Q 006672 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPK------------HPSSYVLLSNIYAAEGR 486 (636)
Q Consensus 419 ~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~------------~~~~~~~l~~~~~~~g~ 486 (636)
.++++.+. .+.+...+..++.+|.+.|++++|.+.++++. ++.|. ++..|..++.+|...|+
T Consensus 228 ~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 301 (327)
T 3cv0_A 228 AYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAI----YMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR 301 (327)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHHTTSCC-----CCTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH----HhCCccccccccchhhcCHHHHHHHHHHHHhcCC
Confidence 99998852 23457889999999999999999999998665 45676 68899999999999999
Q ss_pred hhHHHHHHHHH
Q 006672 487 WKDVARVRTLM 497 (636)
Q Consensus 487 ~~~A~~~~~~m 497 (636)
+++|..++++.
T Consensus 302 ~~~A~~~~~~~ 312 (327)
T 3cv0_A 302 PDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHHHH
Confidence 99999988754
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.2e-15 Score=154.45 Aligned_cols=368 Identities=10% Similarity=-0.040 Sum_probs=181.9
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHhccCC------------CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHC-----C-
Q 006672 63 SRITTQLISSASLHKSIDYALSIFDHFT------------PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL-----S- 124 (636)
Q Consensus 63 ~~~~~~li~~~~~~g~~~~A~~~f~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g- 124 (636)
...||.|...|...|+.++|++.|++.. +...++|+.+...|...|++++|...|++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 4456666666666666666666554321 123345566666666666666666666554331 0
Q ss_pred CCCC-cccHHHHHHHHHc--cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH---HhcCChHHHHHHHhhCCCCCCCCC
Q 006672 125 VRPN-RLTYPFVSKSVAS--LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMY---VQLGKTRGAFKVFDETPEKNKSES 198 (636)
Q Consensus 125 ~~p~-~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~~~~~~ 198 (636)
..++ ..++.....++.. .+++++|...|++.++.. +.++..+..+..++ ...++.++|.+.|++..+.. +.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 0111 1222222222222 234555555555555543 22233333333332 22344444555444433222 333
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHhCC
Q 006672 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP---EKGVVSWTAMINGFSQNG 275 (636)
Q Consensus 199 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 275 (636)
..++..+...+...+ ...|+.++|.+.+++.. ..+..++..+...|...|
T Consensus 209 ~~~~~~l~~~~~~~~---------------------------~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 261 (472)
T 4g1t_A 209 QYLKVLLALKLHKMR---------------------------EEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKD 261 (472)
T ss_dssp HHHHHHHHHHHHHCC---------------------------------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHH---------------------------hhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcC
Confidence 333433333332221 11233444444444432 122444555555555555
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------------------cCCcHHHHHHHHHHHHcCCCCchhHHHH
Q 006672 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAK-------------------VGALEAGVRVHNYISCNDFGLKGAIGTA 336 (636)
Q Consensus 276 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~-------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 336 (636)
++++|+..|++..+.. +-+..++..+..++.. .+..+.|...+..+.+.. +.+...+..
T Consensus 262 ~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 339 (472)
T 4g1t_A 262 EPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSI 339 (472)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHH
T ss_pred chHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhhhhhh
Confidence 5555555555555432 2223333333332211 123567777787777665 566777888
Q ss_pred HhhHHhhcCCHHHHHHHHhhccC--CChh----cHHHHHH-HHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHh
Q 006672 337 LVDMYAKCGNIEAASLVFGETKE--KDLL----TWTAMIW-GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409 (636)
Q Consensus 337 li~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 409 (636)
+...|...|++++|...|++..+ ++.. .+..+.. .+.+.|+.++|+..|++.++ +.|+.......
T Consensus 340 lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~~------ 411 (472)
T 4g1t_A 340 LASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEKM------ 411 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHHH------
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHHH------
Confidence 99999999999999999998764 3322 2333332 23467999999999999998 77775433222
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHH
Q 006672 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLS 478 (636)
Q Consensus 410 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~ 478 (636)
.+.+.++++..... -+.++..|..++.+|...|++++|.+.|+++. ++.|.+|.++.-++
T Consensus 412 ---~~~l~~~~~~~l~~--~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kAL----e~~~~~p~a~~~~G 471 (472)
T 4g1t_A 412 ---KDKLQKIAKMRLSK--NGADSEALHVLAFLQELNEKMQQADEDSERGL----ESGSLIPSASSWNG 471 (472)
T ss_dssp ---HHHHHHHHHHHHHH--CC-CTTHHHHHHHHHHHHHHCC----------------------------
T ss_pred ---HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hcCCCCCcHhhcCC
Confidence 23445556655531 24568899999999999999999999999665 66777776665443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-15 Score=152.02 Aligned_cols=149 Identities=13% Similarity=0.086 Sum_probs=94.8
Q ss_pred HHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHH
Q 006672 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAI 382 (636)
Q Consensus 306 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 382 (636)
+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|.+.++++.+ .+..+|..+...|...|++++|+
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 344455555555555555443 33455555566666666666666666655442 34556677777777777777777
Q ss_pred HHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-------------ChhHHHHHHHHHHhcCC
Q 006672 383 QYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-------------SVKHHTVVVNLLSRVGQ 448 (636)
Q Consensus 383 ~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-------------~~~~~~~l~~~~~~~g~ 448 (636)
..|+++.+ ..|+ ..++..+...+...|++++|.+.++++.+. .| +...|..++.+|.+.|+
T Consensus 227 ~~~~~a~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 301 (327)
T 3cv0_A 227 DAYNRALD--INPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM---QVGGTTPTGEASREATRSMWDFFRMLLNVMNR 301 (327)
T ss_dssp HHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HTTSCC-----CCTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHH--cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccccccccchhhcCHHHHHHHHHHHHhcCC
Confidence 77777766 3343 556667777777777777777777777642 22 35677777788888888
Q ss_pred chHHHHHHHHHH
Q 006672 449 DSQGYQNSQNSF 460 (636)
Q Consensus 449 ~~~A~~~~~~~~ 460 (636)
+++|.++++++.
T Consensus 302 ~~~A~~~~~~~l 313 (327)
T 3cv0_A 302 PDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHTTCCS
T ss_pred HHHHHHHHHHHH
Confidence 888887777444
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.4e-17 Score=177.60 Aligned_cols=127 Identities=8% Similarity=-0.004 Sum_probs=87.5
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhHH---CCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 006672 95 HIFNVLIRGLAENSHFQSCISHFVFMLR---LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLA 171 (636)
Q Consensus 95 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 171 (636)
.+||+||.+|++.|+.++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|+.|.+.|+.||+.|||+||
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 4677777777777777777777766543 3667777777777777777777777777777777777777777777777
Q ss_pred HHHHhcCCh-HHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 006672 172 DMYVQLGKT-RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL 221 (636)
Q Consensus 172 ~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 221 (636)
+++++.|+. ++|.++|++|.+.|+.||..+|+.++.+..+.+-++.+.++
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 777777763 56677777777777777777777777666555433333333
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.6e-17 Score=175.45 Aligned_cols=152 Identities=13% Similarity=0.117 Sum_probs=127.2
Q ss_pred ChhHHHHHHHHhhcCCChHHHHHHhccCC-------CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHH
Q 006672 62 SSRITTQLISSASLHKSIDYALSIFDHFT-------PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPF 134 (636)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 134 (636)
-..+||+||++|++.|++++|.++|+.|. .||+++||+||.+|++.|++++|+++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34589999999999999999999997653 68999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCh-HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCC-CCChhhHHHHHHHHHhc
Q 006672 135 VSKSVASLSLL-SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK-SESVLLWNVLINGCSKI 212 (636)
Q Consensus 135 ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~ 212 (636)
+|.++++.|+. +.|.++|++|.+.|+.||..+|+.++..+.+.+-++...++..++.-... +|.+.+...|.+.|.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d 285 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccC
Confidence 99999999985 78999999999999999999999999888777666666555444432111 12244555566666665
Q ss_pred C
Q 006672 213 G 213 (636)
Q Consensus 213 g 213 (636)
+
T Consensus 286 ~ 286 (1134)
T 3spa_A 286 G 286 (1134)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-14 Score=137.51 Aligned_cols=223 Identities=9% Similarity=0.055 Sum_probs=178.5
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCC--Cc----hhHH
Q 006672 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG--LK----GAIG 334 (636)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 334 (636)
...|..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|...+..+.+.... ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456777778888888888888888887765 66777777888888888888888888877764311 11 5777
Q ss_pred HHHhhHHhhcCCHHHHHHHHhhccC--CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcC
Q 006672 335 TALVDMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSG 411 (636)
Q Consensus 335 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g 411 (636)
..+...|.+.|++++|...|+++.+ ++ ...+...|++++|+..++++.. ..|+ ...+..+...+...|
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhc
Confidence 8888888888888888888888765 33 2456677889999999999988 5565 457778888899999
Q ss_pred cHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHH
Q 006672 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVA 491 (636)
Q Consensus 412 ~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~ 491 (636)
++++|...++++.+. .+.+...|..++.+|.+.|++++|.+.++++. +++|.++.+|..++.+|...|++++|.
T Consensus 154 ~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al----~~~~~~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAI----EKDPNFVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH----HhCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999998852 23457889999999999999999999998665 568999999999999999999999999
Q ss_pred HHHHHHHhC
Q 006672 492 RVRTLMQRR 500 (636)
Q Consensus 492 ~~~~~m~~~ 500 (636)
..+++..+.
T Consensus 228 ~~~~~a~~~ 236 (258)
T 3uq3_A 228 ETLDAARTK 236 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988774
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.5e-15 Score=136.45 Aligned_cols=190 Identities=13% Similarity=0.060 Sum_probs=121.5
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHc
Q 006672 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIH 375 (636)
Q Consensus 299 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 375 (636)
+..+...+...|++++|...++.+++.. |.+...+..+...|.+.|++++|...|++..+ .+...|..+...+...
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~ 86 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVAL 86 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 3333333444444444444444444332 33344444444444444444444444444332 2334455555555555
Q ss_pred -----------CChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHH
Q 006672 376 -----------GRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443 (636)
Q Consensus 376 -----------g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~ 443 (636)
|++++|+..|++..+ ..|+ ...+..+..++...|++++|+..|++..+ .. .++..+..++.+|
T Consensus 87 ~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~--~~~~~~~~la~~~ 161 (217)
T 2pl2_A 87 YRQAEDRERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAEASLKQALA-LE--DTPEIRSALAELY 161 (217)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC--CCHHHHHHHHHHH
T ss_pred hhhhhhhcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh-cc--cchHHHHHHHHHH
Confidence 899999999999998 5676 56788888899999999999999999986 33 7788999999999
Q ss_pred HhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHH
Q 006672 444 SRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQ 498 (636)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 498 (636)
...|++++|.+.++++. +++|+++..+..++.++...|++++|...+++..
T Consensus 162 ~~~g~~~~A~~~~~~al----~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 162 LSMGRLDEALAQYAKAL----EQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHTCHHHHHHHHHHHH----HHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHcCCHHHHHHHHHHHH----HhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999998655 6799999999999999999999999999887653
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.4e-14 Score=135.66 Aligned_cols=247 Identities=10% Similarity=0.018 Sum_probs=173.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHH
Q 006672 232 SWVSLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN--DFTVVSALSAC 306 (636)
Q Consensus 232 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~ 306 (636)
.+......+...|++++|...|++..+ .+...|..+...|...|++++|+..|++..+.+..|+ ...+..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 344556667777777777777776543 2355788888888888888888888888887432222 33477778888
Q ss_pred HhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHH
Q 006672 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQ 383 (636)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 383 (636)
...|++++|...+..+.+.. +.+..++..+...|...|++++|...|++..+ .+...|..+...+...+++++|++
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888765 45667888888888888888888888888775 345667777733444568888888
Q ss_pred HHHHHhHcCCCCC-HHHHHHHHHHHHhcCc---HHHHHHHHHHhHhhcCCCCC------hhHHHHHHHHHHhcCCchHHH
Q 006672 384 YFKKMMYSGTEPD-GTVFLAILTACWYSGQ---VKLALNFFDSMRFDYFIEPS------VKHHTVVVNLLSRVGQDSQGY 453 (636)
Q Consensus 384 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~ 453 (636)
.|+++.+ ..|+ ...+..+..++...|+ +++|...++++.+...-.|+ ...|..++..|.+.|++++|.
T Consensus 164 ~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 164 SFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 8888887 4555 4566667777777777 77788888777653322343 256777888888888888888
Q ss_pred HHHHHHHHHHhccCCCCchhHHHHHHHHHHcC
Q 006672 454 QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEG 485 (636)
Q Consensus 454 ~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g 485 (636)
+.++++. +++|+++.++..+.......+
T Consensus 242 ~~~~~al----~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 242 AAWKNIL----ALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHH----HHCTTCHHHHHHHC-------
T ss_pred HHHHHHH----hcCccHHHHHHHhhhhhcccc
Confidence 8887554 568888877777766554443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-13 Score=134.29 Aligned_cols=238 Identities=8% Similarity=-0.149 Sum_probs=176.3
Q ss_pred cCCHHHHHHHHhhCCCC-------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHH
Q 006672 243 KGDLKKAGELFEQMPEK-------GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315 (636)
Q Consensus 243 ~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 315 (636)
.|++++|...|+++.+. +..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 45677777777765542 25678888888888888888888888888753 44677888888888888888888
Q ss_pred HHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC--CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCC
Q 006672 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393 (636)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 393 (636)
...++.+++.. +.+..++..+...|.+.|++++|...|+++.+ |+.......+..+...|++++|+..+++.... .
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~ 174 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-S 174 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-C
Confidence 88888888764 45678888888899999999999999988764 44333444445556679999999999888774 2
Q ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-----hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCC
Q 006672 394 EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-----VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKP 468 (636)
Q Consensus 394 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p 468 (636)
.++...+ .++..+...++.++|...++.... ..|+ ...+..++..|.+.|++++|.+.++++. +++|
T Consensus 175 ~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al----~~~p 246 (275)
T 1xnf_A 175 DKEQWGW-NIVEFYLGNISEQTLMERLKADAT---DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV----ANNV 246 (275)
T ss_dssp CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCC---SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----TTCC
T ss_pred CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhc---ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH----hCCc
Confidence 2333333 466677788888999999988763 2232 5788899999999999999999998554 6677
Q ss_pred CCchhHHHHHHHHHHcCChhHHHHHH
Q 006672 469 KHPSSYVLLSNIYAAEGRWKDVARVR 494 (636)
Q Consensus 469 ~~~~~~~~l~~~~~~~g~~~~A~~~~ 494 (636)
.+.. ..+.++...|++++|.+.+
T Consensus 247 ~~~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 HNFV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TTCH---HHHHHHHHHHHHHHC----
T ss_pred hhHH---HHHHHHHHHHHHHhhHHHH
Confidence 6644 4466788889999888765
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.7e-13 Score=139.43 Aligned_cols=226 Identities=12% Similarity=0.054 Sum_probs=145.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCC--------------------cHHHHH
Q 006672 263 SWTAMINGFSQNGEAEKALAMFFQMLDA----GVRA-NDFTVVSALSACAKVGA--------------------LEAGVR 317 (636)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~--------------------~~~a~~ 317 (636)
+|..+...|...|++++|+..+++..+. +-.+ ...++..+...+...|+ ++.|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 4445555555555555555555554431 0000 12244445555555555 566665
Q ss_pred HHHHHHHc----C-CCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC-----CC----hhcHHHHHHHHHHcCChHHHHH
Q 006672 318 VHNYISCN----D-FGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-----KD----LLTWTAMIWGLAIHGRYEQAIQ 383 (636)
Q Consensus 318 ~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~ 383 (636)
.+....+. + .+....++..+...|...|++++|...|++..+ ++ ..+|..+...|...|++++|+.
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 55554431 1 111234566777777778888888777776653 12 2377888888889999999999
Q ss_pred HHHHHhHc----CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC----hhHHHHHHHHHHhcCCchHHHH
Q 006672 384 YFKKMMYS----GTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS----VKHHTVVVNLLSRVGQDSQGYQ 454 (636)
Q Consensus 384 ~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~ 454 (636)
.+++..+. +..+. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|.+.|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99887652 11111 346777888899999999999999887642211222 5678889999999999999999
Q ss_pred HHHHHHHHHhccC--CCCchhHHHHHHHHHHcCChh
Q 006672 455 NSQNSFTKLLQLK--PKHPSSYVLLSNIYAAEGRWK 488 (636)
Q Consensus 455 ~~~~~~~~~~~l~--p~~~~~~~~l~~~~~~~g~~~ 488 (636)
.++++.+..-+.. |....++..++.+|...|+..
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 9998876554442 334567888888888888664
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.6e-13 Score=139.76 Aligned_cols=341 Identities=11% Similarity=0.035 Sum_probs=183.7
Q ss_pred HHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh---HHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcC--
Q 006672 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKT---RGAFKVFDETPEKNKSESVLLWNVLINGCSKIG-- 213 (636)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-- 213 (636)
+.+.|++++|.+.+....+.| ++..+..|..+|...|+. ++|...|++..+ .+...+..+...+...|
T Consensus 13 ~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~----~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 13 ALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD----TSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC--C
T ss_pred HHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh----CCHHHHHHHHHHHHhCCCC
Confidence 334445555555555554443 122222333334444444 555555554442 13344444444333333
Q ss_pred ---ChHHHHHHHhhCCCC-ChHHHHHHHHHHHhcCCHHH---HHHHHhhCCC-CChhhHHHHHHHHHhCCChHHHHHHHH
Q 006672 214 ---YLRKAVELFGMMPKK-NVASWVSLIDGFMRKGDLKK---AGELFEQMPE-KGVVSWTAMINGFSQNGEAEKALAMFF 285 (636)
Q Consensus 214 ---~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~ 285 (636)
++++|+..|++...+ +...+..|...|...+..++ +.+.+..... .+...+..+...|...+.++++.....
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred CCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHH
Confidence 445555555544422 22344444444444333222 2222222221 234555556666666664444433322
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhc----CCHHHHHHHHhhcc
Q 006672 286 QMLDAGVRANDFTVVSALSACAKVG---ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC----GNIEAASLVFGETK 358 (636)
Q Consensus 286 ~m~~~g~~p~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~ 358 (636)
...+.-...+...+..+...+...| +.++|...+....+.| +++...+..|..+|... ++.++|...|++..
T Consensus 166 ~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 166 RICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 2222111111225555555666666 6666666666666665 44444445555555443 67788888887776
Q ss_pred CCChhcHHHHHHH-H--HHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcC-----cHHHHHHHHHHhHhhcCCC
Q 006672 359 EKDLLTWTAMIWG-L--AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG-----QVKLALNFFDSMRFDYFIE 430 (636)
Q Consensus 359 ~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~~ 430 (636)
..+...+..+... | ...+++++|+..|++..+.| +...+..+...|. .| ++++|.++|++.. .
T Consensus 245 ~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~ 315 (452)
T 3e4b_A 245 PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----G 315 (452)
T ss_dssp GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----T
T ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----C
Confidence 4456677777766 3 45788889999998888765 4556666666665 45 8899999888664 4
Q ss_pred CChhHHHHHHHHHHh----cCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHH----cCChhHHHHHHHHHHhCCC
Q 006672 431 PSVKHHTVVVNLLSR----VGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAA----EGRWKDVARVRTLMQRRSI 502 (636)
Q Consensus 431 p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~ 502 (636)
-++..+..|..+|.. ..++++|...|+++.+ +.++.....|+.+|.. ..+.++|..++++..+.|.
T Consensus 316 g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~------~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 316 REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR------NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT------TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh------hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 456777788887776 3488999999987763 4567788899998885 3578899999999988774
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.3e-13 Score=128.42 Aligned_cols=235 Identities=13% Similarity=0.030 Sum_probs=173.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC--CCCC----HHHHHHHH
Q 006672 232 SWVSLIDGFMRKGDLKKAGELFEQMPE--KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG--VRAN----DFTVVSAL 303 (636)
Q Consensus 232 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~----~~t~~~ll 303 (636)
.+..+...+...|++++|...|++..+ .+..+|..+...|...|++++|+..|++..+.. ..|+ ..++..+.
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 86 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIG 86 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHH
Confidence 455555666666666666666654422 456677888888888888888888888877632 1122 46777777
Q ss_pred HHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCC---ChhcHHHHHHHHHHcCChHH
Q 006672 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK---DLLTWTAMIWGLAIHGRYEQ 380 (636)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~ 380 (636)
..+...|++++|...+..+.+.. |+ ...+.+.|++++|...++++... +...|..+...+...|++++
T Consensus 87 ~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 87 NAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHH
Confidence 88888888888888888887754 33 23466678888898888887653 45678889999999999999
Q ss_pred HHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHH
Q 006672 381 AIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNS 459 (636)
Q Consensus 381 A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 459 (636)
|+..|+++.+. .|+ ..++..+..++...|++++|...++...+. .+.+...|..++..|.+.|++++|.+.++++
T Consensus 158 A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 158 AVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999884 444 678888999999999999999999999852 2345788999999999999999999999976
Q ss_pred HHHH--hccCCCCchhHHHHHH
Q 006672 460 FTKL--LQLKPKHPSSYVLLSN 479 (636)
Q Consensus 460 ~~~~--~~l~p~~~~~~~~l~~ 479 (636)
.+.. ....|.+...+..+..
T Consensus 234 ~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 234 RTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHhChhhcCCCchHHHHHHHHH
Confidence 6432 1112766666665544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=6.6e-12 Score=121.61 Aligned_cols=222 Identities=10% Similarity=-0.026 Sum_probs=159.4
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCcHHHHHHHHHHHHcCCCCchhHHHH
Q 006672 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK----VGALEAGVRVHNYISCNDFGLKGAIGTA 336 (636)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 336 (636)
..++..+...|...|++++|+..|++..+.+ +...+..+...+.. .+++++|...+....+.+ ++..+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 4556666666667777777777777666632 34455556666666 677777777777766654 5566666
Q ss_pred HhhHHhh----cCCHHHHHHHHhhccC-CChhcHHHHHHHHHH----cCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHH
Q 006672 337 LVDMYAK----CGNIEAASLVFGETKE-KDLLTWTAMIWGLAI----HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407 (636)
Q Consensus 337 li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 407 (636)
+..+|.. .+++++|...|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..+...+
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 156 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLY 156 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHH
Confidence 7777777 7777777777776654 356677777777777 788888888888888754 455666666777
Q ss_pred Hh----cCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh----cCCchHHHHHHHHHHHHHhccCCCCchhHHHHHH
Q 006672 408 WY----SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR----VGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSN 479 (636)
Q Consensus 408 ~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~ 479 (636)
.. .+++++|...|++..+ . .++..+..+..+|.. .+++++|.+.++++.+ .+| +..+..|+.
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~----~~~--~~a~~~l~~ 226 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACD-L---KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACE----LEN--GGGCFNLGA 226 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH----TTC--HHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh----CCC--HHHHHHHHH
Confidence 76 7888888888888774 2 245677778888888 8888888888886653 333 667888888
Q ss_pred HHHH----cCChhHHHHHHHHHHhCC
Q 006672 480 IYAA----EGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 480 ~~~~----~g~~~~A~~~~~~m~~~g 501 (636)
+|.. .|++++|.+.+++..+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8888 888888888888888765
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.3e-12 Score=123.09 Aligned_cols=201 Identities=13% Similarity=0.001 Sum_probs=113.4
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhH
Q 006672 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340 (636)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 340 (636)
...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.+..+.+.. +.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~----------- 103 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SR----------- 103 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-----------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cC-----------
Confidence 3456666666666666666666666665542 2244445555555555555555555555554432 22
Q ss_pred HhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHH
Q 006672 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNF 419 (636)
Q Consensus 341 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 419 (636)
+...|..+...|...|++++|++.|+++.+.+..|+ ...+..+...+...|++++|...
T Consensus 104 --------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 104 --------------------NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------------cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334455555555555666666666665555323343 33555555566666666666666
Q ss_pred HHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 420 ~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
++++.+. .+.+...+..++.+|.+.|++++|.+.++++ ++..|.+...+..++.+|...|++++|.+.++++.+
T Consensus 164 ~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 164 FEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLF----AQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH----HTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6665531 1223555666666666666666666666543 345666666666666666666666666666666655
Q ss_pred C
Q 006672 500 R 500 (636)
Q Consensus 500 ~ 500 (636)
.
T Consensus 238 ~ 238 (252)
T 2ho1_A 238 L 238 (252)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.52 E-value=7.4e-13 Score=123.51 Aligned_cols=192 Identities=13% Similarity=0.056 Sum_probs=132.2
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhH
Q 006672 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340 (636)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 340 (636)
...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+++.. |.+...+..+...
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEA 82 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 4455666666666667777776666666542 3345566666666666677777777766666654 4456666666777
Q ss_pred Hhhc-----------CCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHH
Q 006672 341 YAKC-----------GNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406 (636)
Q Consensus 341 ~~~~-----------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 406 (636)
|.+. |++++|...|++..+ .+...|..+...|...|++++|+..|++..+.. .+...+..+..+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~ 160 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHH
Confidence 7776 888888888887764 356788888889999999999999999998866 667788888889
Q ss_pred HHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHH
Q 006672 407 CWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNS 459 (636)
Q Consensus 407 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 459 (636)
+...|++++|...|++..+ ..| +...+..+..++.+.|++++|.+.+++.
T Consensus 161 ~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALE---QAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHcCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999998875 334 5778888899999999999999888744
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-12 Score=125.67 Aligned_cols=233 Identities=10% Similarity=0.000 Sum_probs=189.6
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCc--hhHHHHHhh
Q 006672 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK--GAIGTALVD 339 (636)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~ 339 (636)
..+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+..+.+.+..++ ...+..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345567788999999999999999999864 33445788888899999999999999999998432222 334889999
Q ss_pred HHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHH
Q 006672 340 MYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKL 415 (636)
Q Consensus 340 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 415 (636)
.|...|++++|...|++..+ .+..+|..+...|...|++++|+..|++..+ ..|+ ...+..+...+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR--PTTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC--SSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh--cCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998765 4667999999999999999999999999988 4666 4566666635555669999
Q ss_pred HHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCC---chHHHHHHHHHHHHHhccCCCC-----chhHHHHHHHHHHcCC
Q 006672 416 ALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQ---DSQGYQNSQNSFTKLLQLKPKH-----PSSYVLLSNIYAAEGR 486 (636)
Q Consensus 416 a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~l~p~~-----~~~~~~l~~~~~~~g~ 486 (636)
|.+.|+++.+ ..|+ ...+..+..++...|+ +++|...++++.+.... .|.. ..+|..++..|...|+
T Consensus 161 A~~~~~~a~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (272)
T 3u4t_A 161 ADSSFVKVLE---LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAP-GGAKYKDELIEANEYIAYYYTINRD 236 (272)
T ss_dssp HHHHHHHHHH---HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGG-GGGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHH---hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhc-ccccchHHHHHHHHHHHHHHHHcCC
Confidence 9999999986 3344 7788889999999998 99999999988765422 2331 2688899999999999
Q ss_pred hhHHHHHHHHHHhCC
Q 006672 487 WKDVARVRTLMQRRS 501 (636)
Q Consensus 487 ~~~A~~~~~~m~~~g 501 (636)
+++|.+.++++.+..
T Consensus 237 ~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 237 KVKADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998854
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.52 E-value=6.7e-13 Score=134.36 Aligned_cols=227 Identities=10% Similarity=0.082 Sum_probs=181.8
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHcCCCCchhHHHHHhh
Q 006672 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA-LEAGVRVHNYISCNDFGLKGAIGTALVD 339 (636)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~ 339 (636)
...|+.+...+.+.|++++|+..|++.+... +-+...|..+..++...|+ +++|...++.+++.. +.+..+|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4567777777888888888888888887753 3356677777777778885 888888888888765 567778888888
Q ss_pred HHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHh-cCcHH
Q 006672 340 MYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWY-SGQVK 414 (636)
Q Consensus 340 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~-~g~~~ 414 (636)
+|.+.|++++|...|+++.+ .+..+|..+..++...|++++|+..|+++++ +.|+ ...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcch
Confidence 88888888888888887764 5677899999999999999999999999998 5665 5688888888888 56657
Q ss_pred HH-----HHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcC--CchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcC-
Q 006672 415 LA-----LNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVG--QDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEG- 485 (636)
Q Consensus 415 ~a-----~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g- 485 (636)
+| +..|++.++ +.| +...|..+..+|.+.| ++++|.+.++++ +.+|+++.++..|+.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-----~~~p~~~~al~~La~~~~~~~~ 324 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-----QPSHSSPYLIAFLVDIYEDMLE 324 (382)
T ss_dssp HHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-----TTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-----ccCCCCHHHHHHHHHHHHHHhc
Confidence 77 588888875 445 4778999999999988 689998888643 678999999999999999975
Q ss_pred --------ChhHHHHHHHHH-Hh
Q 006672 486 --------RWKDVARVRTLM-QR 499 (636)
Q Consensus 486 --------~~~~A~~~~~~m-~~ 499 (636)
..++|.++++++ .+
T Consensus 325 ~~~~~~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 325 NQCDNKEDILNKALELCEILAKE 347 (382)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHT
T ss_pred ccccchHHHHHHHHHHHHHHHHH
Confidence 258999999998 55
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.7e-13 Score=127.67 Aligned_cols=209 Identities=11% Similarity=0.047 Sum_probs=107.6
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhH
Q 006672 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340 (636)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 340 (636)
..+|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 4556667777777777777777777777642 3355666666666677777777777777666553 3445555556666
Q ss_pred HhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCcHHHH
Q 006672 341 YAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLA 416 (636)
Q Consensus 341 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a 416 (636)
|...|++++|.+.|+++.+ .+...|..+...+...|++++|+..++++.+. .| +...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHH
Confidence 6666666666666555442 24445555555666666666666666665552 22 244555555555556666666
Q ss_pred HHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHH
Q 006672 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSN 479 (636)
Q Consensus 417 ~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~ 479 (636)
...++++.+. .+.+...+..++.+|.+.|++++|.+.++++. +++|+++..+..+..
T Consensus 179 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~----~~~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 179 LSQFAAVTEQ--DPGHADAFYNAGVTYAYKENREKALEMLDKAI----DIQPDHMLALHAKKL 235 (243)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH----HHCTTCHHHHHHHTC
T ss_pred HHHHHHHHHh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHH----ccCcchHHHHHHHHH
Confidence 6666555531 12234555555566666666666665555333 345555555544443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=3.4e-13 Score=130.61 Aligned_cols=224 Identities=13% Similarity=-0.012 Sum_probs=183.6
Q ss_pred HhCCChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHH
Q 006672 272 SQNGEAEKALAMFFQMLDAGVR---ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348 (636)
Q Consensus 272 ~~~g~~~~A~~l~~~m~~~g~~---p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 348 (636)
...|++++|+..|+++.+.... .+..++..+...+...|++++|...+..+++.. +.+..++..+...|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 4568899999999999986321 245678888889999999999999999999875 567889999999999999999
Q ss_pred HHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHh
Q 006672 349 AASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425 (636)
Q Consensus 349 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 425 (636)
+|...|+++.+ .+..+|..+...|...|++++|+..|+++.+ ..|+.......+..+...|++++|...++....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999998875 4678999999999999999999999999998 567665555555666778999999999988875
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 426 DYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 426 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
. .+++...+ .++..+...++.++|.+.++++.+......|.++..|..++.+|...|++++|...++++.+..
T Consensus 173 ~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 173 K--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp H--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred c--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 3 23444444 4777788888889999998866543333334457899999999999999999999999998854
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.51 E-value=3.4e-12 Score=121.85 Aligned_cols=207 Identities=12% Similarity=0.048 Sum_probs=147.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006672 230 VASWVSLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306 (636)
Q Consensus 230 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 306 (636)
...+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 56788999999999999999999998753 357789999999999999999999999998764 34566777777777
Q ss_pred HhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHH
Q 006672 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386 (636)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 386 (636)
...|++++|...+..+.+.+..|+ +...|..+...|...|++++|+..|+
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~ 165 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPE------------------------------RSRVFENLGLVSLQMKKPAQAKEYFE 165 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTT------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcc------------------------------cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777777777777777665211111 22344555566666667777777777
Q ss_pred HHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Q 006672 387 KMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQ 465 (636)
Q Consensus 387 ~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 465 (636)
++.+. .|+ ...+..+...+...|++++|..+++.+.+ ..+.+...+..+...+.+.|++++|.+.++++. +
T Consensus 166 ~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~----~ 237 (252)
T 2ho1_A 166 KSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQ--GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLK----R 237 (252)
T ss_dssp HHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----H
T ss_pred HHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHH----H
Confidence 66663 333 55666677777777777777777777764 223446667777777778888888877777554 4
Q ss_pred cCCCCchhHH
Q 006672 466 LKPKHPSSYV 475 (636)
Q Consensus 466 l~p~~~~~~~ 475 (636)
+.|+++....
T Consensus 238 ~~p~~~~~~~ 247 (252)
T 2ho1_A 238 LYPGSLEYQE 247 (252)
T ss_dssp HCTTSHHHHH
T ss_pred HCCCCHHHHH
Confidence 5676655443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-12 Score=132.60 Aligned_cols=243 Identities=8% Similarity=-0.008 Sum_probs=185.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006672 231 ASWVSLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMINGFSQNGE-AEKALAMFFQMLDAGVRANDFTVVSALSAC 306 (636)
Q Consensus 231 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 306 (636)
..|..+...+.+.|++++|+..|+++.. .+..+|+.+...+...|+ +++|+..|++..... +-+...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 4555666666666777777777766542 346678888888888886 888888888888753 33667777788888
Q ss_pred HhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHH-cCChHHH-
Q 006672 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAI-HGRYEQA- 381 (636)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~-~g~~~~A- 381 (636)
...|++++|...++.+++.. +.+...|..+..++.+.|++++|...|+++.+ .+...|+.+..++.. .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHH
Confidence 88888888888888888765 66778888888888888888888888888775 466788888888888 6665777
Q ss_pred ----HHHHHHHhHcCCCCC-HHHHHHHHHHHHhcC--cHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcC-------
Q 006672 382 ----IQYFKKMMYSGTEPD-GTVFLAILTACWYSG--QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG------- 447 (636)
Q Consensus 382 ----~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g--~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g------- 447 (636)
+..|++.++ +.|+ ...|..+...+...| ++++|.+.+..+ + ..+.+...+..++++|.+.|
T Consensus 256 ~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 256 LEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccch
Confidence 588999988 6676 568888888888888 689999988877 2 22345778889999999875
Q ss_pred --CchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHH
Q 006672 448 --QDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAA 483 (636)
Q Consensus 448 --~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~ 483 (636)
.+++|.++++++. .+++|.....|..++..+..
T Consensus 331 ~~~~~~A~~~~~~l~---~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 331 EDILNKALELCEILA---KEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHH---HTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHhCchhHHHHHHHHHHHHH
Confidence 2588888887541 57899988999888776654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=9.4e-12 Score=120.53 Aligned_cols=220 Identities=11% Similarity=-0.012 Sum_probs=173.1
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHhhCCCC-ChhhHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006672 229 NVASWVSLIDGFMRKGDLKKAGELFEQMPEK-GVVSWTAMINGFSQ----NGEAEKALAMFFQMLDAGVRANDFTVVSAL 303 (636)
Q Consensus 229 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 303 (636)
++.++..+...|...|++++|...|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 4455566666666667777777777665544 35677777888888 888888888888888765 566777777
Q ss_pred HHHHh----cCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhh----cCCHHHHHHHHhhccC-CChhcHHHHHHHHHH
Q 006672 304 SACAK----VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK----CGNIEAASLVFGETKE-KDLLTWTAMIWGLAI 374 (636)
Q Consensus 304 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~ 374 (636)
..+.. .+++++|...++...+.+ +...+..+..+|.. .++.++|...|++..+ .+..++..+...|..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 158 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 77877 888888888888888764 66777888888888 8889999888887765 456678888888888
Q ss_pred ----cCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh-
Q 006672 375 ----HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY----SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR- 445 (636)
Q Consensus 375 ----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~- 445 (636)
.+++++|+..|++..+.+ +...+..+...+.. .+++++|...|++..+ .+ +...+..+..+|.+
T Consensus 159 ~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 159 GRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE-LE---NGGGCFNLGAMQYNG 231 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh-CC---CHHHHHHHHHHHHcC
Confidence 899999999999998853 45677778888888 9999999999999885 22 26778889999998
Q ss_pred ---cCCchHHHHHHHHHHH
Q 006672 446 ---VGQDSQGYQNSQNSFT 461 (636)
Q Consensus 446 ---~g~~~~A~~~~~~~~~ 461 (636)
.|++++|.+.++++.+
T Consensus 232 ~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHH
Confidence 9999999999997664
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.3e-12 Score=133.29 Aligned_cols=339 Identities=12% Similarity=-0.003 Sum_probs=153.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCCh---HHHHHHhccCCCCCcchHHHHHHHHHhCC--
Q 006672 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSI---DYALSIFDHFTPKNLHIFNVLIRGLAENS-- 108 (636)
Q Consensus 34 ~~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g-- 108 (636)
+.......+++++|.+++....+.| ++.++..|-.+|...|+. ++|...|++....++..+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 3344444456777888887777765 333444555566666666 77777777666556666666666555554
Q ss_pred ---CchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChH---HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC---
Q 006672 109 ---HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS---LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK--- 179 (636)
Q Consensus 109 ---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~--- 179 (636)
++++|+..|++..+.|. ...+..|...+...+..+ .+.+.+....+.| ++.....|...|...+.
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 56677777777776542 224555555554443322 2334444444333 33455556666666653
Q ss_pred -hHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcC---ChHHHHHHHhhCCC---CChHHHHHHHHHHHhc----CCHHH
Q 006672 180 -TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG---YLRKAVELFGMMPK---KNVASWVSLIDGFMRK----GDLKK 248 (636)
Q Consensus 180 -~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~----g~~~~ 248 (636)
.+.+..+++... ..+..++..|...|...| +.++|++.|++..+ ++...+..|..+|... ++.++
T Consensus 160 ~~~~a~~~~~~a~----~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 160 HLDDVERICKAAL----NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp GHHHHHHHHHHHT----TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred CHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 333333444433 223335555666665565 55555555554431 2222223444444332 34455
Q ss_pred HHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCC
Q 006672 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328 (636)
Q Consensus 249 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 328 (636)
|...|++....+...+..+...|. .....++.++|...+....+.|
T Consensus 236 A~~~~~~aa~g~~~a~~~Lg~~~~--------------------------------~~~~~~d~~~A~~~~~~Aa~~g-- 281 (452)
T 3e4b_A 236 AQALLEKIAPGYPASWVSLAQLLY--------------------------------DFPELGDVEQMMKYLDNGRAAD-- 281 (452)
T ss_dssp HHHHHHHHGGGSTHHHHHHHHHHH--------------------------------HSGGGCCHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHH--------------------------------hCCCCCCHHHHHHHHHHHHHCC--
Confidence 555554444112334444443311 0023444444544444444433
Q ss_pred CchhHHHHHhhHHhhcC-----CHHHHHHHHhhccCCChhcHHHHHHHHHH----cCChHHHHHHHHHHhHcCCCCCHHH
Q 006672 329 LKGAIGTALVDMYAKCG-----NIEAASLVFGETKEKDLLTWTAMIWGLAI----HGRYEQAIQYFKKMMYSGTEPDGTV 399 (636)
Q Consensus 329 ~~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t 399 (636)
++.....|..+|. .| +.++|.+.|++....+...+..|...|.. ..++++|...|++..+.|. ...
T Consensus 282 -~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A 356 (452)
T 3e4b_A 282 -QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAVGREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSA 356 (452)
T ss_dssp -CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTTTTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTH
T ss_pred -CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHH
Confidence 3334444444444 23 55666666655553344455555554444 2256666666666655442 222
Q ss_pred HHHHHHHHHh----cCcHHHHHHHHHHhH
Q 006672 400 FLAILTACWY----SGQVKLALNFFDSMR 424 (636)
Q Consensus 400 ~~~ll~a~~~----~g~~~~a~~~~~~m~ 424 (636)
...+...|.. ..+.++|..+|+...
T Consensus 357 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 357 DFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp HHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 3333333332 335666666666655
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.2e-13 Score=140.68 Aligned_cols=269 Identities=13% Similarity=0.046 Sum_probs=165.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCC--C-Ch----HHHHHHHHHHHhcCCHHHHHHHHhhCCCC---------ChhhH
Q 006672 201 LWNVLINGCSKIGYLRKAVELFGMMPK--K-NV----ASWVSLIDGFMRKGDLKKAGELFEQMPEK---------GVVSW 264 (636)
Q Consensus 201 ~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~ 264 (636)
.+..+...+...|++++|+..|+++.. | +. .++..+...|...|++++|...|++.... ...+|
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 344455566666777776666665541 1 11 24445555555555555555555443210 12344
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcC-CCCchhHHHHHhhHHhh
Q 006672 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND-FGLKGAIGTALVDMYAK 343 (636)
Q Consensus 265 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~ 343 (636)
..+...|...|++++|+..|++..+.. .+.+ .+....++..+...|..
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLA-------------------------------RQLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhhchHHHHHHHHHHHHHHHH
Confidence 444455555555555555554443210 0000 11223344555555666
Q ss_pred cCC-----------------HHHHHHHHhhccC-----C----ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCC-CC
Q 006672 344 CGN-----------------IEAASLVFGETKE-----K----DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE-PD 396 (636)
Q Consensus 344 ~g~-----------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~ 396 (636)
.|+ +++|.+.+++..+ . ...+|..+...|...|++++|+..+++..+.... ++
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 666 6666655554432 1 2346777888888889999998888887762110 11
Q ss_pred ----HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC----ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC-
Q 006672 397 ----GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP----SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLK- 467 (636)
Q Consensus 397 ----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~- 467 (636)
..++..+...+...|++++|...+++......-.. ....+..++.+|.+.|++++|.+.++++.+..-+..
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 12677788888999999999999988764221111 156788899999999999999999998776543331
Q ss_pred -CCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 468 -PKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 468 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
+....++..++.+|...|++++|.+.+++..+.
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 223458889999999999999999999988763
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.5e-12 Score=118.38 Aligned_cols=200 Identities=13% Similarity=0.005 Sum_probs=115.6
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhH
Q 006672 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340 (636)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 340 (636)
...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~----------- 74 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PD----------- 74 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-----------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CC-----------
Confidence 4556666666666666666666666666542 2334455555555555555555555555555432 22
Q ss_pred HhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHc-CChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHH
Q 006672 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH-GRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALN 418 (636)
Q Consensus 341 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~ 418 (636)
+..+|..+...|... |++++|+..++++.+.+..|+ ...+..+..++...|++++|..
T Consensus 75 --------------------~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 134 (225)
T 2vq2_A 75 --------------------SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA 134 (225)
T ss_dssp --------------------CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------------ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 334455555555555 666666666666555223333 3455555566666666666666
Q ss_pred HHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCC-CCchhHHHHHHHHHHcCChhHHHHHHHHH
Q 006672 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKP-KHPSSYVLLSNIYAAEGRWKDVARVRTLM 497 (636)
Q Consensus 419 ~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 497 (636)
.++++.+. .+.+...+..++.+|.+.|++++|.+.++++. +..| .++..+..++..+...|+.++|..+++.+
T Consensus 135 ~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 135 YLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQ----SRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH----HHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 66666541 12235566666666666666666666666443 3456 56666666666666667777666666666
Q ss_pred Hh
Q 006672 498 QR 499 (636)
Q Consensus 498 ~~ 499 (636)
.+
T Consensus 209 ~~ 210 (225)
T 2vq2_A 209 QA 210 (225)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.48 E-value=8.6e-12 Score=116.46 Aligned_cols=210 Identities=13% Similarity=0.063 Sum_probs=142.7
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006672 229 NVASWVSLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305 (636)
Q Consensus 229 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 305 (636)
+...+..+...+...|++++|...|+++.+ .+...|..+...|...|++++|...|+++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 456788999999999999999999998653 347789999999999999999999999998863 4466777778888
Q ss_pred HHhc-CCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHH
Q 006672 306 CAKV-GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384 (636)
Q Consensus 306 ~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 384 (636)
+... |++++|...++.+.+.+..|+ +...|..+...+...|++++|+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~------------------------------~~~~~~~l~~~~~~~~~~~~A~~~ 135 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPT------------------------------PYIANLNKGICSAKQGQFGLAEAY 135 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSC------------------------------HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcc------------------------------hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888 888888888888776211111 123444455555556666666666
Q ss_pred HHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 006672 385 FKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKL 463 (636)
Q Consensus 385 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 463 (636)
|+++.+ ..|+ ...+..+...+...|++++|..+++.+.+.. ...+...+..+...+...|+.++|..+++.+.
T Consensus 136 ~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--- 209 (225)
T 2vq2_A 136 LKRSLA--AQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ--- 209 (225)
T ss_dssp HHHHHH--HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---
T ss_pred HHHHHH--hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH---
Confidence 666655 2333 4455666666666677777777666665411 11345556666666667777777766666433
Q ss_pred hccCCCCchhHHH
Q 006672 464 LQLKPKHPSSYVL 476 (636)
Q Consensus 464 ~~l~p~~~~~~~~ 476 (636)
+..|+++.....
T Consensus 210 -~~~p~~~~~~~~ 221 (225)
T 2vq2_A 210 -ANFPYSEELQTV 221 (225)
T ss_dssp -HHCTTCHHHHHH
T ss_pred -HhCCCCHHHHHH
Confidence 346666554443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-12 Score=123.89 Aligned_cols=199 Identities=13% Similarity=0.094 Sum_probs=157.4
Q ss_pred CCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHH
Q 006672 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIW 370 (636)
Q Consensus 294 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 370 (636)
....++..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|...|+++.+ .+...|..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 344567777778889999999999999998754 56788999999999999999999999998764 46778999999
Q ss_pred HHHHcCChHHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCc
Q 006672 371 GLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQD 449 (636)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~ 449 (636)
.|...|++++|++.++++.+. .| +...+..+...+...|++++|..+++++.+. .+.+...+..++..|.+.|++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCH
Confidence 999999999999999999984 34 4668888889999999999999999999852 234678899999999999999
Q ss_pred hHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 450 SQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 450 ~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
++|.+.++++. +..|.++.++..++.+|...|++++|.+.++++.+..
T Consensus 176 ~~A~~~~~~~~----~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 176 DEALSQFAAVT----EQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH----HhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 99999998665 5689999999999999999999999999999998844
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.46 E-value=3.5e-10 Score=122.17 Aligned_cols=428 Identities=9% Similarity=0.005 Sum_probs=287.8
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCC---CCCcchHHHHHHHHHhCCC---chHHHHHHHHhH
Q 006672 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT---PKNLHIFNVLIRGLAENSH---FQSCISHFVFML 121 (636)
Q Consensus 48 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~ 121 (636)
...++..+... +.|...|..++..+.+.+.++.|+.+|+++. +.....|...+..-.+.++ ++.+..+|++..
T Consensus 52 i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal 130 (679)
T 4e6h_A 52 IGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCL 130 (679)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Confidence 33445555544 4588999999999999999999999999775 5667789998988888888 999999999998
Q ss_pred HCC-CCCCcccHHHHHHHHHccCCh--------HHHHHHHHHHHHh-CC-CCC-hhHHHHHHHHHH---------hcCCh
Q 006672 122 RLS-VRPNRLTYPFVSKSVASLSLL--------SLGRGLHCLIVKS-GV-EYD-AFVRVHLADMYV---------QLGKT 180 (636)
Q Consensus 122 ~~g-~~p~~~t~~~ll~~~~~~~~~--------~~a~~~~~~~~~~-g~-~~~-~~~~~~li~~~~---------~~g~~ 180 (636)
... ..|+...|..-+....+.++. +..+++|+.++.. |. .++ ...|...+.... ..+++
T Consensus 131 ~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~ 210 (679)
T 4e6h_A 131 SKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRV 210 (679)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHH
Confidence 753 237777777777665554443 3455788877654 65 554 467877776644 24467
Q ss_pred HHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhh-----
Q 006672 181 RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ----- 255 (636)
Q Consensus 181 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----- 255 (636)
+.++++|++........-..+|......--..+. ..+..++.+ ...+++.|...+.+
T Consensus 211 ~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e-----------------~~~~y~~Ar~~~~e~~~~~ 272 (679)
T 4e6h_A 211 QYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE-----------------LSAQYMNARSLYQDWLNIT 272 (679)
T ss_dssp HHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH-----------------HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHH-----------------hhHHHHHHHHHHHHHHHHH
Confidence 8899999988853222222344332221111111 011111111 00122222232221
Q ss_pred --C----CC----------C--C------hhhHHHHHHHHHhCC-------ChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006672 256 --M----PE----------K--G------VVSWTAMINGFSQNG-------EAEKALAMFFQMLDAGVRANDFTVVSALS 304 (636)
Q Consensus 256 --~----~~----------~--~------~~~~~~li~~~~~~g-------~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 304 (636)
+ +. | + ...|...+.---.++ ..+.+..+|++.+.. ++-+...|...+.
T Consensus 273 ~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~ 351 (679)
T 4e6h_A 273 KGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMAN 351 (679)
T ss_dssp TTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHH
T ss_pred HhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHH
Confidence 1 10 0 0 235666655444333 134456778888765 3556777877777
Q ss_pred HHHhcCCcHHHH-HHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC-------------CC---------
Q 006672 305 ACAKVGALEAGV-RVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-------------KD--------- 361 (636)
Q Consensus 305 ~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------~~--------- 361 (636)
-+...|+.+.|. .+++..+.. .|.+..++..++...-+.|+++.|.++|+++.. |+
T Consensus 352 ~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~ 430 (679)
T 4e6h_A 352 YQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLK 430 (679)
T ss_dssp HHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhc
Confidence 788889999996 999999864 366777888899999999999999999988764 21
Q ss_pred ---hhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhc-CcHHHHHHHHHHhHhhcCCCCChhHHH
Q 006672 362 ---LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS-GQVKLALNFFDSMRFDYFIEPSVKHHT 437 (636)
Q Consensus 362 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~~~~~~ 437 (636)
...|...+....+.|+.+.|..+|.++++.-..+....|......-.+. ++.+.|.++|+...+. .+.+...+.
T Consensus 431 ~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~ 508 (679)
T 4e6h_A 431 SKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYIN 508 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHH
Confidence 2368888888888899999999999998851111233443332222233 4589999999999864 334567778
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHhccCC---CCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 006672 438 VVVNLLSRVGQDSQGYQNSQNSFTKLLQLKP---KHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502 (636)
Q Consensus 438 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 502 (636)
..++.....|+.+.|..+|+++. ...| .....|..++..-.+.|..+.+..+.+++.+.-.
T Consensus 509 ~y~~fe~~~~~~~~AR~lferal----~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 509 KYLDFLIYVNEESQVKSLFESSI----DKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHT----TTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHHHhCCCHHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 89999999999999999999665 3344 2446788888888899999999999999988643
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-12 Score=130.34 Aligned_cols=238 Identities=11% Similarity=0.055 Sum_probs=152.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCC-----CCchh
Q 006672 263 SWTAMINGFSQNGEAEKALAMFFQMLDA----GVRA-NDFTVVSALSACAKVGALEAGVRVHNYISCNDF-----GLKGA 332 (636)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~ 332 (636)
.|..+...|...|++++|+..+++..+. +..| ...++..+...+...|++++|...+....+... .....
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 124 (338)
T 3ro2_A 45 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 124 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHH
Confidence 4445555555555555555555554321 1111 123444445555555566655555555443210 01123
Q ss_pred HHHHHhhHHhhcCC--------------------HHHHHHHHhhccC-----C----ChhcHHHHHHHHHHcCChHHHHH
Q 006672 333 IGTALVDMYAKCGN--------------------IEAASLVFGETKE-----K----DLLTWTAMIWGLAIHGRYEQAIQ 383 (636)
Q Consensus 333 ~~~~li~~~~~~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~ 383 (636)
++..+...|...|+ +++|.+.+++... + ...++..+...|...|++++|+.
T Consensus 125 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 204 (338)
T 3ro2_A 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 204 (338)
T ss_dssp HHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 55556666666666 6666666655432 1 23467778888888999999999
Q ss_pred HHHHHhHcCC-CCC----HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC----hhHHHHHHHHHHhcCCchHHHH
Q 006672 384 YFKKMMYSGT-EPD----GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS----VKHHTVVVNLLSRVGQDSQGYQ 454 (636)
Q Consensus 384 ~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~ 454 (636)
.+++..+... .++ ..++..+...+...|++++|..++++......-.++ ...+..++..|...|++++|.+
T Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (338)
T 3ro2_A 205 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 284 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9988765210 111 236777788889999999999999887642211122 5677889999999999999999
Q ss_pred HHHHHHHHHhccC--CCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 455 NSQNSFTKLLQLK--PKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 455 ~~~~~~~~~~~l~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
.++++.+..-... +....++..++.+|...|++++|...++++.+.
T Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 285 YHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9998776543322 112457889999999999999999999998874
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-12 Score=133.66 Aligned_cols=267 Identities=11% Similarity=0.067 Sum_probs=197.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCC-CHHHHH
Q 006672 233 WVSLIDGFMRKGDLKKAGELFEQMPE---KG----VVSWTAMINGFSQNGEAEKALAMFFQMLDA----GVRA-NDFTVV 300 (636)
Q Consensus 233 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~ 300 (636)
+......+...|++++|...|++... .+ ..+|..+...|...|++++|...|++.... +-.| ...++.
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 91 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 91 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 34444455555555555555554432 12 346778888899999999999998887542 2222 245677
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHcC----C-CCchhHHHHHhhHHhhcCC--------------------HHHHHHHHh
Q 006672 301 SALSACAKVGALEAGVRVHNYISCND----F-GLKGAIGTALVDMYAKCGN--------------------IEAASLVFG 355 (636)
Q Consensus 301 ~ll~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~ 355 (636)
.+...+...|++++|...+..+.+.. . .....++..+...|...|+ +++|...++
T Consensus 92 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 171 (406)
T 3sf4_A 92 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYE 171 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 78888999999999999998877531 1 1124578889999999999 999998887
Q ss_pred hccC-----C----ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCC-CCC----HHHHHHHHHHHHhcCcHHHHHHHHH
Q 006672 356 ETKE-----K----DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT-EPD----GTVFLAILTACWYSGQVKLALNFFD 421 (636)
Q Consensus 356 ~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~ 421 (636)
+..+ + ...+|..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|...++
T Consensus 172 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 251 (406)
T 3sf4_A 172 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 251 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 7543 1 234788899999999999999999999876211 112 2377888889999999999999999
Q ss_pred HhHhhcCCCCC----hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC--CCCchhHHHHHHHHHHcCChhHHHHHHH
Q 006672 422 SMRFDYFIEPS----VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLK--PKHPSSYVLLSNIYAAEGRWKDVARVRT 495 (636)
Q Consensus 422 ~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (636)
+......-.++ ...+..++..|.+.|++++|.+.++++.+..-+.. +....++..++.+|...|++++|.+.++
T Consensus 252 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 331 (406)
T 3sf4_A 252 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAE 331 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88642211112 56788999999999999999999998876543332 1125688899999999999999999999
Q ss_pred HHHh
Q 006672 496 LMQR 499 (636)
Q Consensus 496 ~m~~ 499 (636)
+..+
T Consensus 332 ~al~ 335 (406)
T 3sf4_A 332 KHLE 335 (406)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-12 Score=136.26 Aligned_cols=209 Identities=11% Similarity=0.054 Sum_probs=164.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHh
Q 006672 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL-EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355 (636)
Q Consensus 277 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 355 (636)
+++++..+++..... +.+...+..+..++...|++ ++|.+.++.+++.. +.+...+..+...|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455556666554432 33566666667777777777 77777777777654 4556777778888888888888888887
Q ss_pred hccC--CChhcHHHHHHHHHHc---------CChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhc--------CcHHH
Q 006672 356 ETKE--KDLLTWTAMIWGLAIH---------GRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYS--------GQVKL 415 (636)
Q Consensus 356 ~~~~--~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~--------g~~~~ 415 (636)
+..+ |+...|..+...|... |++++|++.|++..+ ..|+ ...|..+..+|... |++++
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ--MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 7664 5566777777888887 999999999999988 5565 66888888888888 99999
Q ss_pred HHHHHHHhHhhcCCCC----ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHH
Q 006672 416 ALNFFDSMRFDYFIEP----SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVA 491 (636)
Q Consensus 416 a~~~~~~m~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~ 491 (636)
|...|++..+ +.| ++..|..+..+|.+.|++++|.+.++++. +++|+++.++..++.++...|++++|.
T Consensus 240 A~~~~~~al~---~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al----~l~p~~~~a~~~l~~~~~~lg~~~eAi 312 (474)
T 4abn_A 240 ALSAYAQAEK---VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAA----ALDPAWPEPQQREQQLLEFLSRLTSLL 312 (474)
T ss_dssp HHHHHHHHHH---HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999986 345 68899999999999999999999998655 679999999999999999999999998
Q ss_pred HHHHH
Q 006672 492 RVRTL 496 (636)
Q Consensus 492 ~~~~~ 496 (636)
+.+.+
T Consensus 313 ~~~~~ 317 (474)
T 4abn_A 313 ESKGK 317 (474)
T ss_dssp HHTTT
T ss_pred HHhcc
Confidence 76543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.4e-12 Score=132.75 Aligned_cols=263 Identities=14% Similarity=0.123 Sum_probs=164.1
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCCCCCCh----hhHHHHHHHHHhcCChHHHHHHHhhCCC---------CChHHHHH
Q 006672 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESV----LLWNVLINGCSKIGYLRKAVELFGMMPK---------KNVASWVS 235 (636)
Q Consensus 169 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~---------~~~~~~~~ 235 (636)
.+...+...|++++|...|++..+.. +.+. ..|..+...|...|++++|+..|++... ....++..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 34455566666666666666555432 2222 3556666666666666666666655541 12357888
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCC---------ChhhHHHHHHHHHhCCC-----------------hHHHHHHHHHHHH
Q 006672 236 LIDGFMRKGDLKKAGELFEQMPEK---------GVVSWTAMINGFSQNGE-----------------AEKALAMFFQMLD 289 (636)
Q Consensus 236 li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~l~~~m~~ 289 (636)
+...|...|++++|...|++.... ...+|..+...|...|+ +++|+..+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 899999999999999998876431 13467777778888888 6666666665443
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC-----CC---
Q 006672 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-----KD--- 361 (636)
Q Consensus 290 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~--- 361 (636)
. .... ...+....++..+...|...|++++|...|++..+ .+
T Consensus 212 ~----------------------------~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 261 (411)
T 4a1s_A 212 L----------------------------MRDL--GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAA 261 (411)
T ss_dssp H----------------------------HHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred H----------------------------HHHc--CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHH
Confidence 1 0000 00011123444555555555666655555555443 11
Q ss_pred -hhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCC-CC----HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC----
Q 006672 362 -LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE-PD----GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP---- 431 (636)
Q Consensus 362 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p---- 431 (636)
..++..+...|...|++++|+..|++..+.... .+ ..++..+...+...|++++|..++++......-.+
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 341 (411)
T 4a1s_A 262 ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIG 341 (411)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHH
Confidence 226667777777888888888888777652110 11 34667777788888888888888887764211111
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 006672 432 SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK 462 (636)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 462 (636)
....+..+..+|.+.|++++|.+.++++.+.
T Consensus 342 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 342 EARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1457788889999999999999999866643
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.44 E-value=6e-12 Score=113.85 Aligned_cols=165 Identities=11% Similarity=0.112 Sum_probs=139.2
Q ss_pred CchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHH
Q 006672 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAIL 404 (636)
Q Consensus 329 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll 404 (636)
.++.+|..+...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|+..+++... ..|+ ...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHH
Confidence 3567788888888888999999888888764 4677888999999999999999999999888 4454 55677777
Q ss_pred HHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHc
Q 006672 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAE 484 (636)
Q Consensus 405 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~ 484 (636)
..+...++++.+...+.+..+. .+.+...+..++.+|.+.|++++|++.++++. +++|.++.+|..++.+|.+.
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l----~~~p~~~~~~~~lg~~~~~~ 154 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTI----SIKPGFIRAYQSIGLAYEGK 154 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHH----HhcchhhhHHHHHHHHHHHC
Confidence 7888999999999999988752 23457788999999999999999999998554 67999999999999999999
Q ss_pred CChhHHHHHHHHHHhCC
Q 006672 485 GRWKDVARVRTLMQRRS 501 (636)
Q Consensus 485 g~~~~A~~~~~~m~~~g 501 (636)
|++++|.+.+++..+..
T Consensus 155 g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 155 GLRDEAVKYFKKALEKE 171 (184)
T ss_dssp TCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhCC
Confidence 99999999999998753
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=5e-12 Score=125.89 Aligned_cols=266 Identities=13% Similarity=0.092 Sum_probs=154.2
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCCCCC----hhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCH
Q 006672 171 ADMYVQLGKTRGAFKVFDETPEKNKSES----VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDL 246 (636)
Q Consensus 171 i~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~ 246 (636)
...+...|++++|...|++..+.. +.+ ...|..+...+...|++++|++.+++..
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-------------------- 70 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL-------------------- 70 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------------------
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------------
Confidence 344555566666666555554332 222 2344455555555555555555544322
Q ss_pred HHHHHHHhhCCCC--ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHhcCC--------
Q 006672 247 KKAGELFEQMPEK--GVVSWTAMINGFSQNGEAEKALAMFFQMLDAG-VRAN----DFTVVSALSACAKVGA-------- 311 (636)
Q Consensus 247 ~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~----~~t~~~ll~~~~~~~~-------- 311 (636)
.+......+ ...++..+...|...|++++|...+++..+.. -.++ ..++..+...+...|+
T Consensus 71 ----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 146 (338)
T 3ro2_A 71 ----TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQ 146 (338)
T ss_dssp ----HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC
T ss_pred ----HHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhh
Confidence 111111110 12344455555555555555555555543310 0011 2244445555555555
Q ss_pred ------------cHHHHHHHHHHHHc----C-CCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC-----CC----hhcH
Q 006672 312 ------------LEAGVRVHNYISCN----D-FGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-----KD----LLTW 365 (636)
Q Consensus 312 ------------~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~ 365 (636)
++.|...+....+. + .+....++..+...|...|++++|...+++..+ ++ ..++
T Consensus 147 ~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 226 (338)
T 3ro2_A 147 DTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAY 226 (338)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 55555555544321 1 111234566677777788888888877776653 11 2377
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhHc----CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC----hhHH
Q 006672 366 TAMIWGLAIHGRYEQAIQYFKKMMYS----GTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS----VKHH 436 (636)
Q Consensus 366 ~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~ 436 (636)
..+...|...|++++|+..+++..+. +..+. ..++..+...+...|++++|...+++..+...-.++ ...+
T Consensus 227 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 306 (338)
T 3ro2_A 227 SNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRAC 306 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 88888888999999999999887652 11111 346777788889999999999999887642211111 4577
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHH
Q 006672 437 TVVVNLLSRVGQDSQGYQNSQNSFT 461 (636)
Q Consensus 437 ~~l~~~~~~~g~~~~A~~~~~~~~~ 461 (636)
..+...|.+.|++++|.+.++++.+
T Consensus 307 ~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 307 WSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Confidence 8899999999999999999986653
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-10 Score=114.46 Aligned_cols=179 Identities=10% Similarity=0.068 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchh-HHHHHhhHHhhcCCHHHHHHHHh
Q 006672 278 EKALAMFFQMLDAGVRA-NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA-IGTALVDMYAKCGNIEAASLVFG 355 (636)
Q Consensus 278 ~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~ 355 (636)
++|..+|++..+. +.| +...+..++..+...|++++|..+|+.+++.. +.+.. +|..++..+.+.|++++|..+|+
T Consensus 81 ~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 5666666666552 122 33455555555556666666666666665532 22232 56666666666666666666666
Q ss_pred hccCC---ChhcHHHHHHHHH-HcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCC
Q 006672 356 ETKEK---DLLTWTAMIWGLA-IHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430 (636)
Q Consensus 356 ~~~~~---~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 430 (636)
+..+. +...|...+.... ..|+.++|..+|++..+ ..|+ ...|..++..+...|++++|..+|++......+.
T Consensus 159 ~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~ 236 (308)
T 2ond_A 159 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK--KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence 65542 2222322222211 24666666666666665 3343 4456666666666666677776666666421234
Q ss_pred C--ChhHHHHHHHHHHhcCCchHHHHHHHHHH
Q 006672 431 P--SVKHHTVVVNLLSRVGQDSQGYQNSQNSF 460 (636)
Q Consensus 431 p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (636)
| ....|..++..+.+.|+.++|..+++++.
T Consensus 237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3 24566666666666666666666665443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1e-11 Score=135.70 Aligned_cols=163 Identities=17% Similarity=0.252 Sum_probs=139.6
Q ss_pred CCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHH
Q 006672 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAI 403 (636)
Q Consensus 328 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l 403 (636)
|.+...++.|...|.+.|++++|.+.|++..+ .+..+|+.+..+|.+.|++++|++.|++.++ +.|+ ...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 44567788888888888888888888888764 4567889999999999999999999999988 6677 5688889
Q ss_pred HHHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 006672 404 LTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYA 482 (636)
Q Consensus 404 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~ 482 (636)
..++...|++++|++.|++..+ +.|+ ...|..++.+|.+.|++++|++.|+++. +++|+++.+|..|+.+|.
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al----~l~P~~~~a~~~L~~~l~ 156 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTAL----KLKPDFPDAYCNLAHCLQ 156 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCCCChHHHhhhhhHHH
Confidence 9999999999999999999885 4454 7889999999999999999999988554 679999999999999999
Q ss_pred HcCChhHHHHHHHHHHh
Q 006672 483 AEGRWKDVARVRTLMQR 499 (636)
Q Consensus 483 ~~g~~~~A~~~~~~m~~ 499 (636)
..|+|++|.+.++++.+
T Consensus 157 ~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 157 IVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HTTCCTTHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHH
Confidence 99999999998888765
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-11 Score=126.06 Aligned_cols=228 Identities=10% Similarity=-0.013 Sum_probs=159.1
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcC--C----CCchhHHH
Q 006672 267 MINGFSQNGEAEKALAMFFQMLDA----GVRA-NDFTVVSALSACAKVGALEAGVRVHNYISCND--F----GLKGAIGT 335 (636)
Q Consensus 267 li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 335 (636)
....+...|++++|+..|++..+. +-.+ ...++..+...+...|+++.|...+....+.. . +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445566677777777777776642 1111 22455666666677777777777776665421 1 11234667
Q ss_pred HHhhHHhhcCCHHHHHHHHhhccC-----CC----hhcHHHHHHHHHHcCChHHHHHHHHHHhHc----CCCCC-HHHHH
Q 006672 336 ALVDMYAKCGNIEAASLVFGETKE-----KD----LLTWTAMIWGLAIHGRYEQAIQYFKKMMYS----GTEPD-GTVFL 401 (636)
Q Consensus 336 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~ 401 (636)
.+...|...|++++|...|++..+ ++ ..++..+...|...|++++|+..|++..+. +..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 777888888888888888776653 11 237888889999999999999999988762 23244 45788
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC---hhHHHHHHHHHHhcCC---chHHHHHHHHHHHHHhccCCCCchhHH
Q 006672 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPS---VKHHTVVVNLLSRVGQ---DSQGYQNSQNSFTKLLQLKPKHPSSYV 475 (636)
Q Consensus 402 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~l~p~~~~~~~ 475 (636)
.+...+...|++++|...+++..+...-.++ ...+..+...|...|+ +++|..++++. ...|.....+.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-----~~~~~~~~~~~ 343 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-----MLYADLEDFAI 343 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-----TCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-----cCHHHHHHHHH
Confidence 8888999999999999999987642211112 3345778888889998 77777777643 22344556788
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHh
Q 006672 476 LLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 476 ~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
.++.+|...|++++|...+++..+
T Consensus 344 ~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 344 DVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999998865
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-11 Score=121.34 Aligned_cols=235 Identities=11% Similarity=0.102 Sum_probs=172.1
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHc------C-
Q 006672 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDA-------GVRANDFTVVSALSACAKVGALEAGVRVHNYISCN------D- 326 (636)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~- 326 (636)
..+|..+...|...|++++|+.+|+++.+. ..+.....+..+...+...|++++|...+..+++. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 568899999999999999999999999873 22334567778888899999999999999988764 2
Q ss_pred CCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC-----------CChhcHHHHHHHHHHcCChHHHHHHHHHHhHc----
Q 006672 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-----------KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS---- 391 (636)
Q Consensus 327 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 391 (636)
.+....++..+...|...|++++|...|+++.+ ....++..+...|...|++++|++.|+++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 234567788899999999999999999987653 12346888889999999999999999998774
Q ss_pred --CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhc------CCCCC-------hhHHHHHHHHHHhcCCchHHHHH
Q 006672 392 --GTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDY------FIEPS-------VKHHTVVVNLLSRVGQDSQGYQN 455 (636)
Q Consensus 392 --g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~ 455 (636)
+..|+ ..++..+...+...|++++|..+++++.+.. ...+. ...+..+...+...+.+.+|...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 22444 3477888889999999999999999988521 11111 12233344455566677777777
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 456 SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 456 ~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
+++.. ...|.++.++..++.+|.+.|++++|.+.+++..+
T Consensus 267 ~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 267 YKACK----VDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhhcC----CCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66443 45677888999999999999999999999998876
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.34 E-value=4.3e-10 Score=110.88 Aligned_cols=218 Identities=11% Similarity=0.041 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------hcCCc-------HHHHHHHHHHHHcCCCCchhHHHHHhhHHhh
Q 006672 278 EKALAMFFQMLDAGVRANDFTVVSALSACA-------KVGAL-------EAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343 (636)
Q Consensus 278 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 343 (636)
++|...|++..... +-+...|..+...+. ..|++ ++|..+++..++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888888888752 445666766666654 35886 8999999999974225677799999999999
Q ss_pred cCCHHHHHHHHhhccC--C-Chh-cHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHH-hcCcHHHHH
Q 006672 344 CGNIEAASLVFGETKE--K-DLL-TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACW-YSGQVKLAL 417 (636)
Q Consensus 344 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~-~~g~~~~a~ 417 (636)
.|++++|..+|+++.+ | +.. .|..++..+.+.|++++|..+|++..+. .|+ ...|........ ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999876 3 344 8999999999999999999999999984 344 344544433322 379999999
Q ss_pred HHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCC-CchhHHHHHHHHHHcCChhHHHHHHHH
Q 006672 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPK-HPSSYVLLSNIYAAEGRWKDVARVRTL 496 (636)
Q Consensus 418 ~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 496 (636)
.+|++..+.. +.++..|..+++.+.+.|++++|..+|+++.+.. .+.|+ ....|..++..+.+.|++++|..++++
T Consensus 190 ~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 190 KIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG-SLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS-SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999998632 3457899999999999999999999999776320 13453 667899999999999999999999999
Q ss_pred HHhCC
Q 006672 497 MQRRS 501 (636)
Q Consensus 497 m~~~g 501 (636)
+.+..
T Consensus 267 a~~~~ 271 (308)
T 2ond_A 267 RFTAF 271 (308)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 98854
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.28 E-value=2.7e-10 Score=102.40 Aligned_cols=163 Identities=11% Similarity=0.056 Sum_probs=140.8
Q ss_pred hhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHH
Q 006672 331 GAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTA 406 (636)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a 406 (636)
...+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|+..++++.+. .|+ ...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence 45567778888999999999999998876 36678889999999999999999999999884 444 6688888889
Q ss_pred HHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCC
Q 006672 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGR 486 (636)
Q Consensus 407 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~ 486 (636)
+...|++++|.++++++.+. .+.+...+..++..|.+.|++++|.+.++++. +..|.++.++..++.+|...|+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~la~~~~~~~~ 159 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIAL----GLRPNEGKVHRAIAFSYEQMGR 159 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHH----hcCccchHHHHHHHHHHHHcCC
Confidence 99999999999999998852 24567888999999999999999999998665 4578899999999999999999
Q ss_pred hhHHHHHHHHHHhCC
Q 006672 487 WKDVARVRTLMQRRS 501 (636)
Q Consensus 487 ~~~A~~~~~~m~~~g 501 (636)
+++|.+.++++.+..
T Consensus 160 ~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 160 HEEALPHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999987743
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.28 E-value=2.5e-10 Score=103.00 Aligned_cols=165 Identities=8% Similarity=-0.006 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHH
Q 006672 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAI 374 (636)
Q Consensus 298 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 374 (636)
.|..+...+...|++++|...|+.+++.. |.+..++..+...|.+.|++++|...+..... .+...+..+...+..
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFM 85 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 33344444444444444444444444332 33444444455555555555555555544432 234455555555666
Q ss_pred cCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHH
Q 006672 375 HGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY 453 (636)
Q Consensus 375 ~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 453 (636)
.++++.|...+.+..+ ..|+ ...+..+..++...|++++|++.|++..+. -+.++..|..++.+|.+.|++++|.
T Consensus 86 ~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 86 IDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp TTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cchhhhHHHHHHHHHHHCCCHHHHH
Confidence 6666666666666665 3343 445556666666666777777666666541 1223556666777777777777777
Q ss_pred HHHHHHHHHHhccCCCCc
Q 006672 454 QNSQNSFTKLLQLKPKHP 471 (636)
Q Consensus 454 ~~~~~~~~~~~~l~p~~~ 471 (636)
+.|+++. +++|+++
T Consensus 162 ~~~~~al----~~~p~~a 175 (184)
T 3vtx_A 162 KYFKKAL----EKEEKKA 175 (184)
T ss_dssp HHHHHHH----HTTHHHH
T ss_pred HHHHHHH----hCCccCH
Confidence 7666443 4566543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.4e-10 Score=114.39 Aligned_cols=229 Identities=7% Similarity=-0.045 Sum_probs=155.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHhcCCcHHHHHHHHHHHHcC--C---C-CchhHH
Q 006672 266 AMINGFSQNGEAEKALAMFFQMLDAG-VRAN----DFTVVSALSACAKVGALEAGVRVHNYISCND--F---G-LKGAIG 334 (636)
Q Consensus 266 ~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~---~-~~~~~~ 334 (636)
.....+...|++++|+..|++..+.- -.++ ..++..+...+...|+++.|...+....+.. . . ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 34445566777777777777766421 0122 2355566666777777777777776665421 0 1 124456
Q ss_pred HHHhhHHhhcCCHHHHHHHHhhccC-----CC----hhcHHHHHHHHHHcCChHHHHHHHHHHhHc---CCCCC-HHHHH
Q 006672 335 TALVDMYAKCGNIEAASLVFGETKE-----KD----LLTWTAMIWGLAIHGRYEQAIQYFKKMMYS---GTEPD-GTVFL 401 (636)
Q Consensus 335 ~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~-~~t~~ 401 (636)
+.+...|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|+..|++..+. ...|+ ..++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 6777778888888888877776553 12 246778888888999999999999888761 01222 55778
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC---hhHHHHHHHHHHhcCC---chHHHHHHHHHHHHHhccCCCCchhHH
Q 006672 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPS---VKHHTVVVNLLSRVGQ---DSQGYQNSQNSFTKLLQLKPKHPSSYV 475 (636)
Q Consensus 402 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~l~p~~~~~~~ 475 (636)
.+...+...|++++|..++++..+...-.++ ...+..+...|...|+ +++|...+++. ...|.....+.
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-----~~~~~~~~~~~ 340 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-----NLHAYIEACAR 340 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-----TCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-----CChhHHHHHHH
Confidence 8888899999999999999988753322122 3456667777778888 77777777631 22233456778
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHh
Q 006672 476 LLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 476 ~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
.++..|...|++++|...+++..+
T Consensus 341 ~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 899999999999999999988765
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.6e-10 Score=114.52 Aligned_cols=228 Identities=8% Similarity=0.004 Sum_probs=125.3
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCC----CCCC-ChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcC
Q 006672 170 LADMYVQLGKTRGAFKVFDETPEK----NKSE-SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKG 244 (636)
Q Consensus 170 li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g 244 (636)
....+...|++++|...|++.... +-++ ...+|..+...|...|++++|+..+++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~a------------------- 169 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQA------------------- 169 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-------------------
Confidence 455667778888888888776532 1011 2356677777777777777777765443
Q ss_pred CHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCcHHHH
Q 006672 245 DLKKAGELFEQMPEK---GVVSWTAMINGFSQNGEAEKALAMFFQMLDA----GVRA-NDFTVVSALSACAKVGALEAGV 316 (636)
Q Consensus 245 ~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~ 316 (636)
.+++...... ...+++.+...|...|++++|+..|++..+. +-.+ ...++..+...+...|++++|.
T Consensus 170 -----l~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~ 244 (383)
T 3ulq_A 170 -----YEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAI 244 (383)
T ss_dssp -----HHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred -----HHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 3333332210 1234555555566666666666655555431 1000 1124555555556666666666
Q ss_pred HHHHHHHHc----CC-CCchhHHHHHhhHHhhcCCHHHHHHHHhhccC-----CCh---hcHHHHHHHHHHcCC---hHH
Q 006672 317 RVHNYISCN----DF-GLKGAIGTALVDMYAKCGNIEAASLVFGETKE-----KDL---LTWTAMIWGLAIHGR---YEQ 380 (636)
Q Consensus 317 ~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~---~~~~~li~~~~~~g~---~~~ 380 (636)
..+....+. +. +....++..+...|.+.|++++|...+++..+ .+. ..+..+...|...|+ .++
T Consensus 245 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 324 (383)
T 3ulq_A 245 PYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQG 324 (383)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHH
T ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 666555541 22 33345556666666666666666666655442 121 123445555666666 556
Q ss_pred HHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhH
Q 006672 381 AIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMR 424 (636)
Q Consensus 381 A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 424 (636)
|+.++++. +..|+ ...+..+...|...|++++|..++++..
T Consensus 325 al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 325 FFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66666554 23333 2355566667777777777777777665
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.23 E-value=3.3e-08 Score=106.78 Aligned_cols=431 Identities=10% Similarity=0.023 Sum_probs=252.1
Q ss_pred CCHHHHHHHHHh---cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCC---hHHHHHHhccCC--C---CCcchH
Q 006672 29 ITETHIISLIHS---SNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS---IDYALSIFDHFT--P---KNLHIF 97 (636)
Q Consensus 29 ~~~~~~~~~l~~---~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~f~~~~--~---~~~~~~ 97 (636)
-+......++.. .+.++.++.++++++.. ++.....|...+..-.+.|+ .+.+..+|++.. - |++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 444444444443 45689999999999987 45677889999999888998 999999999654 2 788899
Q ss_pred HHHHHHHHhCCCc--------hHHHHHHHHhHH-CCC-CCCc-ccHHHHHHHHHc---------cCChHHHHHHHHHHHH
Q 006672 98 NVLIRGLAENSHF--------QSCISHFVFMLR-LSV-RPNR-LTYPFVSKSVAS---------LSLLSLGRGLHCLIVK 157 (636)
Q Consensus 98 ~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~~-~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~ 157 (636)
...+.-..+.++. +...++|+.... .|. .|+. ..|...+..... .++.+.++.+|..++.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 9888766555443 234478877654 566 6654 456655554332 2346778899998885
Q ss_pred hCCCCChhHHHHHHHHHHhcC-------------ChHHHHHHHhhCC------CCCCCCChhhHHHHHHHHHhcC-ChHH
Q 006672 158 SGVEYDAFVRVHLADMYVQLG-------------KTRGAFKVFDETP------EKNKSESVLLWNVLINGCSKIG-YLRK 217 (636)
Q Consensus 158 ~g~~~~~~~~~~li~~~~~~g-------------~~~~A~~~~~~m~------~~~~~~~~~~~~~li~~~~~~g-~~~~ 217 (636)
.....-..+|......-...+ +++.|...+.++. ...++....+.+ ....-..+ ....
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~--~~~~p~~~~~~~~ 300 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT--ESNLPKPNEYDVQ 300 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC--TTTSCCTTCCCHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccch--hccCCCCchhHHH
Confidence 322212233332222111111 1222333332210 000000000000 00000000 0000
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHHhcC-------CHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHH-HHHHH
Q 006672 218 AVELFGMMPKKNVASWVSLIDGFMRKG-------DLKKAGELFEQMPE---KGVVSWTAMINGFSQNGEAEKAL-AMFFQ 286 (636)
Q Consensus 218 A~~~~~~m~~~~~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~-~l~~~ 286 (636)
....|...+..--..+ ..+.+..+|++... .....|-..+.-+.+.|+.++|. ++|++
T Consensus 301 -----------ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~r 369 (679)
T 4e6h_A 301 -----------QLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKL 369 (679)
T ss_dssp -----------HHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 0123333333322221 11223344554432 24567777777777778878886 88888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcC----------CCC-----------chhHHHHHhhHHhhcC
Q 006672 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND----------FGL-----------KGAIGTALVDMYAKCG 345 (636)
Q Consensus 287 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~----------~~~-----------~~~~~~~li~~~~~~g 345 (636)
.... ++.+...+...+......|+++.|.++|+.+++.. .+. ...+|...+....+.|
T Consensus 370 Ai~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~ 448 (679)
T 4e6h_A 370 GQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQ 448 (679)
T ss_dssp HHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcC
Confidence 7763 34455555666666777788888888888777531 121 2347888888888888
Q ss_pred CHHHHHHHHhhccCC-ChhcHHHHH---HHHHHc-CChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHH
Q 006672 346 NIEAASLVFGETKEK-DLLTWTAMI---WGLAIH-GRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNF 419 (636)
Q Consensus 346 ~~~~A~~~~~~~~~~-~~~~~~~li---~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 419 (636)
+++.|+.+|.+..+. +..+|...+ ..-.+. ++.+.|..+|+..++. .|+ ...+...+.-....|+.+.|+.+
T Consensus 449 ~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~l 526 (679)
T 4e6h_A 449 GLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSL 526 (679)
T ss_dssp CHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHH
Confidence 899999999887643 222232222 222233 4588999999998884 444 45566777777778999999999
Q ss_pred HHHhHhhcCCCC--ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 006672 420 FDSMRFDYFIEP--SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYA 482 (636)
Q Consensus 420 ~~~m~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~ 482 (636)
|++... ....+ ....|...++.-.+.|..+.+.++.+++. +..|+++ ....++.=|.
T Consensus 527 feral~-~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~----~~~P~~~-~~~~f~~ry~ 585 (679)
T 4e6h_A 527 FESSID-KISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFF----EKFPEVN-KLEEFTNKYK 585 (679)
T ss_dssp HHHHTT-TSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHH----HHSTTCC-HHHHHHHHTC
T ss_pred HHHHHH-hcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCCCCc-HHHHHHHHhc
Confidence 998874 21111 35678888888888999999988888665 4467554 3344444443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.6e-10 Score=113.81 Aligned_cols=231 Identities=10% Similarity=0.026 Sum_probs=166.6
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHhhCCC--------CC---hhhHHHHHHHHHhCCChHHHHHHHHHHHHC------C
Q 006672 229 NVASWVSLIDGFMRKGDLKKAGELFEQMPE--------KG---VVSWTAMINGFSQNGEAEKALAMFFQMLDA------G 291 (636)
Q Consensus 229 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g 291 (636)
+..++..+...|...|++++|...|+++.+ .+ ..++..+...|...|++++|+..|++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 346788999999999999999999998764 22 467889999999999999999999998864 2
Q ss_pred CCC-CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHc------CC-CCchhHHHHHhhHHhhcCCHHHHHHHHhhccCC---
Q 006672 292 VRA-NDFTVVSALSACAKVGALEAGVRVHNYISCN------DF-GLKGAIGTALVDMYAKCGNIEAASLVFGETKEK--- 360 (636)
Q Consensus 292 ~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--- 360 (636)
-.| ...++..+...+...|++++|...+..+.+. +. +....++..+...|...|++++|.+.|+++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 223 3567788888999999999999999998764 22 334567888999999999999999999876541
Q ss_pred --------ChhcHHHHHHHHHHcCChHHHHHHHHHHhHc-------CCCCCHHHH-------HHHHHHHHhcCcHHHHHH
Q 006672 361 --------DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS-------GTEPDGTVF-------LAILTACWYSGQVKLALN 418 (636)
Q Consensus 361 --------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~-------~~ll~a~~~~g~~~~a~~ 418 (636)
...++..+...|...|++++|+..++++.+. ...|..... ..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2347888999999999999999999999863 122222211 112222333444555555
Q ss_pred HHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 006672 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFT 461 (636)
Q Consensus 419 ~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 461 (636)
.++.... ..+.....+..++.+|.+.|++++|.+.++++.+
T Consensus 266 ~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKV--DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCC--CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5655542 1233467889999999999999999999997653
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.7e-10 Score=121.10 Aligned_cols=181 Identities=6% Similarity=-0.043 Sum_probs=156.5
Q ss_pred cHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCH-HHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHH
Q 006672 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI-EAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKK 387 (636)
Q Consensus 312 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 387 (636)
++.+.+.+....+.. +.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|...|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455556666555433 56788999999999999999 999999998764 4577999999999999999999999999
Q ss_pred HhHcCCCCCHHHHHHHHHHHHhc---------CcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhc--------CCch
Q 006672 388 MMYSGTEPDGTVFLAILTACWYS---------GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV--------GQDS 450 (636)
Q Consensus 388 m~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~--------g~~~ 450 (636)
..+ ..|+...+..+..++... |++++|.+.|++..+. -+.+...|..++.+|... |+++
T Consensus 163 al~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 998 668878888899999999 9999999999999862 233578899999999999 9999
Q ss_pred HHHHHHHHHHHHHhccCC---CCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 451 QGYQNSQNSFTKLLQLKP---KHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 451 ~A~~~~~~~~~~~~~l~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
+|.+.|+++. +++| .++..|..++.+|...|++++|.+.+++..+..
T Consensus 239 ~A~~~~~~al----~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 239 QALSAYAQAE----KVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHH----HHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH----HhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999998665 5688 899999999999999999999999999998743
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.20 E-value=4.1e-09 Score=106.93 Aligned_cols=238 Identities=11% Similarity=0.054 Sum_probs=151.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCCcHHHHHHHHHHHHc----CCC--C-c
Q 006672 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGV-RAND----FTVVSALSACAKVGALEAGVRVHNYISCN----DFG--L-K 330 (636)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~ 330 (636)
+++.+...|...|++++|...+++...... .++. .++..+...+...|++++|...++...+. +.+ | .
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 134 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 134 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence 455555666667777777777666554100 1111 22444555666677777777777666542 211 1 2
Q ss_pred hhHHHHHhhHHhhcCCHHHHHHHHhhccC--C------ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHH
Q 006672 331 GAIGTALVDMYAKCGNIEAASLVFGETKE--K------DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFL 401 (636)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~ 401 (636)
...+..+...|...|++++|...+++... + ...+|..+...+...|++++|...+++.......++ ...+.
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 214 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 214 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHH
Confidence 34555677777778888888777776542 1 124567777888888999999999988875322221 11121
Q ss_pred -----HHHHHHHhcCcHHHHHHHHHHhHhhcCCCC--ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC-CCC-ch
Q 006672 402 -----AILTACWYSGQVKLALNFFDSMRFDYFIEP--SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLK-PKH-PS 472 (636)
Q Consensus 402 -----~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~-p~~-~~ 472 (636)
..+..+...|++++|...++.......-.+ ....+..+..++...|++++|.+.++++.+..-... |.+ ..
T Consensus 215 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 294 (373)
T 1hz4_A 215 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 294 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHH
Confidence 223346788999999999988764211111 123567788889999999999999997765543322 112 23
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 473 SYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 473 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
.+..++.+|...|++++|...+++....
T Consensus 295 ~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 295 NLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 6778899999999999999999887663
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=9.4e-10 Score=103.11 Aligned_cols=207 Identities=6% Similarity=-0.017 Sum_probs=160.0
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHh
Q 006672 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338 (636)
Q Consensus 259 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 338 (636)
.|...|......+...|++++|+..|++..+...+++...+..+..++...|++++|...++..++.. +.+..++..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45678888999999999999999999999987644788888888889999999999999999999765 55788899999
Q ss_pred hHHhhcCCHHHHHHHHhhccC--C-Ch-------hcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC--H-HHHHHHHH
Q 006672 339 DMYAKCGNIEAASLVFGETKE--K-DL-------LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD--G-TVFLAILT 405 (636)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~~~~--~-~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~-~t~~~ll~ 405 (636)
..|...|++++|...|++..+ | +. ..|..+...+...|++++|++.|++..+ ..|+ . ..+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHHH
Confidence 999999999999999998775 3 44 4588888889999999999999999988 6776 3 46666666
Q ss_pred HHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 006672 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIY 481 (636)
Q Consensus 406 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~ 481 (636)
++... +..+++.+.. .+ ..+...|.... ....+.+++|...++++. +++|+++.+...+..+.
T Consensus 162 ~~~~~-----~~~~~~~a~~-~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~----~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 162 LFYNN-----GADVLRKATP-LA-SSNKEKYASEK--AKADAAFKKAVDYLGEAV----TLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHH-----HHHHHHHHGG-GT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHH----HHCTTCHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHh-cc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHh----hcCCCCHHHHHHHHHHH
Confidence 66544 4445555553 21 23344444333 344566888988887554 67999988877776553
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.18 E-value=2.9e-10 Score=110.00 Aligned_cols=228 Identities=11% Similarity=0.048 Sum_probs=155.7
Q ss_pred HhCCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHc------C-CCCchhHHHHH
Q 006672 272 SQNGEAEKALAMFFQMLD-------AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN------D-FGLKGAIGTAL 337 (636)
Q Consensus 272 ~~~g~~~~A~~l~~~m~~-------~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l 337 (636)
...|++++|+.+|++..+ ...+....++..+...+...|++++|...+..+++. + .+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 345677777777776654 122234567778888889999999999999888764 2 23346678888
Q ss_pred hhHHhhcCCHHHHHHHHhhccC-------C----ChhcHHHHHHHHHHcCChHHHHHHHHHHhHc------CCCCC-HHH
Q 006672 338 VDMYAKCGNIEAASLVFGETKE-------K----DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS------GTEPD-GTV 399 (636)
Q Consensus 338 i~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t 399 (636)
...|...|++++|...|++..+ + ...+|..+...|...|++++|+..|+++.+. +-.|+ ..+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 9999999999999998887653 1 2457888888899999999999999998773 11343 347
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHhHhhc------CCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhc---cCCC
Q 006672 400 FLAILTACWYSGQVKLALNFFDSMRFDY------FIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQ---LKPK 469 (636)
Q Consensus 400 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---l~p~ 469 (636)
+..+...+...|++++|..+++++.+.. ...+. ...|..+...+...+....+..+ ..+....-. ..|.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY-GEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHH-HHHHHHHHhcCCCCHH
Confidence 7788888899999999999999887521 11222 34455555555544444444332 222211112 2344
Q ss_pred CchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 470 HPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 470 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
.+.++..++.+|...|++++|..++++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5678999999999999999999999988763
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.17 E-value=7e-10 Score=103.97 Aligned_cols=191 Identities=8% Similarity=-0.049 Sum_probs=106.2
Q ss_pred CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHH
Q 006672 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWG 371 (636)
Q Consensus 295 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 371 (636)
|+..+......+...|++++|...+..+++...+++...+..+...|.+.|++++|...|++..+ .+...|..+...
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 44556666666667777777777777766655325555555566666666666666666665543 233456666666
Q ss_pred HHHcCChHHHHHHHHHHhHcCCCCC-H-------HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC---hhHHHHHH
Q 006672 372 LAIHGRYEQAIQYFKKMMYSGTEPD-G-------TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS---VKHHTVVV 440 (636)
Q Consensus 372 ~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l~ 440 (636)
|...|++++|+..|++..+ ..|+ . ..|..+...+...|++++|.+.|++..+ +.|+ ...|..+.
T Consensus 86 ~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 6666666666666666665 3343 2 2344444555556666666666666553 3343 34555555
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 441 NLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
.+|...|+ ..++ +...+.+.++..|..+ .....|.+++|...+++..+..
T Consensus 161 ~~~~~~~~-----~~~~----~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 161 VLFYNNGA-----DVLR----KATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHH-----HHHH----HHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHH-----HHHH----HHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC
Confidence 55544332 1111 2223333333333222 2233445699999999988743
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.17 E-value=9.6e-10 Score=111.89 Aligned_cols=217 Identities=10% Similarity=0.033 Sum_probs=113.0
Q ss_pred HHHHhcCChHHHHHHHhhCCCCCC-CC----ChhhHHHHHHHHHhcCChHHHHHHHhhCCC-----CC-----hHHHHHH
Q 006672 172 DMYVQLGKTRGAFKVFDETPEKNK-SE----SVLLWNVLINGCSKIGYLRKAVELFGMMPK-----KN-----VASWVSL 236 (636)
Q Consensus 172 ~~~~~~g~~~~A~~~~~~m~~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~-----~~~~~~l 236 (636)
..+...|++++|...|++...... .+ ...++..+...|...|++++|+..+++... ++ ..+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 344455555555555554432100 01 233455555566666666655555554431 11 2345555
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC-----CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 006672 237 IDGFMRKGDLKKAGELFEQMPE-----KG----VVSWTAMINGFSQNGEAEKALAMFFQMLD-----AGVRANDFTVVSA 302 (636)
Q Consensus 237 i~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~l 302 (636)
...|...|++++|.+.|++..+ .+ ..+++.+...|...|++++|+..|++..+ .. +....++..+
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~l 267 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGL 267 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHH
Confidence 5566666666666655554332 11 34666777777777777777777777665 22 2224556666
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHcC----CCCchhHHHHHhhHHhhcCC---HHHHHHHHhhccCC--ChhcHHHHHHHHH
Q 006672 303 LSACAKVGALEAGVRVHNYISCND----FGLKGAIGTALVDMYAKCGN---IEAASLVFGETKEK--DLLTWTAMIWGLA 373 (636)
Q Consensus 303 l~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~--~~~~~~~li~~~~ 373 (636)
...+...|++++|...++...+.. .+.....+..+...|...|+ +.+|...+++.... ....+..+...|.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 666667777777777776665531 11222334444445555555 55555555543221 1123344555555
Q ss_pred HcCChHHHHHHHHHHh
Q 006672 374 IHGRYEQAIQYFKKMM 389 (636)
Q Consensus 374 ~~g~~~~A~~~~~~m~ 389 (636)
..|++++|...|++..
T Consensus 348 ~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5555555555555543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.15 E-value=2.5e-08 Score=101.09 Aligned_cols=163 Identities=12% Similarity=0.022 Sum_probs=85.6
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC--C--CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCc-hhHHH-
Q 006672 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVR--A--NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK-GAIGT- 335 (636)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~- 335 (636)
.++..+...|...|++++|...+++....... + ...++..+...+...|++++|...++...+....++ ...+.
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 215 (373)
T 1hz4_A 136 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 215 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH
Confidence 45666777788888888888888877653211 1 234555666667777777777777776654311111 11111
Q ss_pred ----HHhhHHhhcCCHHHHHHHHhhccCCCh-------hcHHHHHHHHHHcCChHHHHHHHHHHhHc----CCCCCH-HH
Q 006672 336 ----ALVDMYAKCGNIEAASLVFGETKEKDL-------LTWTAMIWGLAIHGRYEQAIQYFKKMMYS----GTEPDG-TV 399 (636)
Q Consensus 336 ----~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t 399 (636)
.++..+...|+.++|...+++....+. ..+..+...+...|++++|...+++.... |..++. ..
T Consensus 216 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 295 (373)
T 1hz4_A 216 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRN 295 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHH
Confidence 223335566666666666666554211 12344555555566666666666555431 111111 13
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHhH
Q 006672 400 FLAILTACWYSGQVKLALNFFDSMR 424 (636)
Q Consensus 400 ~~~ll~a~~~~g~~~~a~~~~~~m~ 424 (636)
+..+..++...|+.++|...+++..
T Consensus 296 ~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 296 LLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3333344445555555555554443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.12 E-value=3.5e-09 Score=94.99 Aligned_cols=156 Identities=15% Similarity=0.097 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006672 232 SWVSLIDGFMRKGDLKKAGELFEQMPEK---GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308 (636)
Q Consensus 232 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 308 (636)
.+..+...+...|++++|...|+++... +..+|..+...|...|++++|...++++.+.. +.+...+..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 3445555566666666666666665532 34566666677777777777777777766542 3344555555555666
Q ss_pred cCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHH
Q 006672 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYF 385 (636)
Q Consensus 309 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 385 (636)
.|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|...++++.+ .+..+|..+...+...|++++|...+
T Consensus 89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666666666555443 33344444444444444444444444443332 12333444444444444444444444
Q ss_pred HHHh
Q 006672 386 KKMM 389 (636)
Q Consensus 386 ~~m~ 389 (636)
+++.
T Consensus 168 ~~~~ 171 (186)
T 3as5_A 168 KKAN 171 (186)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.5e-09 Score=118.59 Aligned_cols=159 Identities=13% Similarity=0.080 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHH
Q 006672 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLA 373 (636)
Q Consensus 297 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 373 (636)
.+++.+..++.+.|++++|.+.|+++++.. +.+...+..|..+|.+.|++++|.+.|++..+ .+..+|+.+..+|.
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~ 88 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 88 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 445555555555555555555555555443 34455666666666666666666666666543 34567777888888
Q ss_pred HcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchH
Q 006672 374 IHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQ 451 (636)
Q Consensus 374 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 451 (636)
..|++++|++.|++.++ +.|+ ...+..+..++...|++++|++.|++..+ +.|+ ...|..++.+|...|++++
T Consensus 89 ~~g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~---l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 89 EMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDSGNIPEAIASYRTALK---LKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHhhhhhHHHhcccHHH
Confidence 88888888888888887 5666 55788888888888888888888888875 3454 6778888888888888888
Q ss_pred HHHHHHHHHH
Q 006672 452 GYQNSQNSFT 461 (636)
Q Consensus 452 A~~~~~~~~~ 461 (636)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888886654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=5.2e-10 Score=97.17 Aligned_cols=141 Identities=12% Similarity=0.089 Sum_probs=117.6
Q ss_pred HhhHHhhcCCHHHHHHHHhhccCC---ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCc
Q 006672 337 LVDMYAKCGNIEAASLVFGETKEK---DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQ 412 (636)
Q Consensus 337 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 412 (636)
|..++...|++++|...++...+. +...+..+...|.+.|++++|++.|++.++ +.|+ ..+|..+..++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCc
Confidence 566777888999999999888763 455778899999999999999999999999 6676 6688899999999999
Q ss_pred HHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHH-HHHHHHHHhccCCCCchhHHHHHHHHHHcCC
Q 006672 413 VKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQN-SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGR 486 (636)
Q Consensus 413 ~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~ 486 (636)
+++|...|++..+ +.| ++..|..++.+|.+.|++++|.+. ++ ++++++|+++.+|.....++...|+
T Consensus 81 ~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~----~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVE---LNPTQKDLVLKIAELLCKNDVTDGRAKYWVE----RAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHH----HHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHH----HHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 9999999999986 455 478899999999999999887765 45 4457899999999999999888875
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=4.5e-09 Score=102.66 Aligned_cols=162 Identities=10% Similarity=-0.053 Sum_probs=105.2
Q ss_pred hHHHHHhhHHhhcCCHHHHHHHHhhccC-----CC----hhcHHHHHHHHHHc-CChHHHHHHHHHHhHcCCCCC-----
Q 006672 332 AIGTALVDMYAKCGNIEAASLVFGETKE-----KD----LLTWTAMIWGLAIH-GRYEQAIQYFKKMMYSGTEPD----- 396 (636)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~----- 396 (636)
.+++.+..+|.+.|++++|...|++..+ .+ ..+|+.+...|... |++++|+..|++..+ +.|+
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~--~~~~~~~~~ 155 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGE--WYAQDQSVA 155 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HHHHTTCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH--HHHhCCChH
Confidence 3455555555555555555555554432 11 34677788888886 999999999988876 2221
Q ss_pred --HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCCh-----hHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCC
Q 006672 397 --GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV-----KHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPK 469 (636)
Q Consensus 397 --~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~ 469 (636)
..++..+...+...|++++|...|++..+...-.+.. ..|..++.++...|++++|...+++ .++++|.
T Consensus 156 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~----al~l~p~ 231 (292)
T 1qqe_A 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE----GQSEDPN 231 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHG----GGCC---
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHH----HHhhCCC
Confidence 2467788888999999999999999887522111221 2577788889999999999998884 4577776
Q ss_pred Cchh-----HHHHHHHHH--HcCChhHHHHHHHHHHh
Q 006672 470 HPSS-----YVLLSNIYA--AEGRWKDVARVRTLMQR 499 (636)
Q Consensus 470 ~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~m~~ 499 (636)
...+ +..++..|. ..+++++|...++++..
T Consensus 232 ~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 232 FADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp ------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 5443 344566664 35678888888765543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.02 E-value=2e-08 Score=96.24 Aligned_cols=190 Identities=11% Similarity=0.046 Sum_probs=119.1
Q ss_pred chhHHHHHhhHHhhcCCHHHHHHHHhhccC--C-C---hhcHHHHHHHHHHcCChHHHHHHHHHHhHcCC-CCC-HHHHH
Q 006672 330 KGAIGTALVDMYAKCGNIEAASLVFGETKE--K-D---LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT-EPD-GTVFL 401 (636)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~ 401 (636)
+...+..+...+.+.|++++|...|+++.+ | + ...+..+..+|.+.|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 344445555555566666666666665543 2 2 34555566666666666666666666665211 111 22444
Q ss_pred HHHHHHHh--------cCcHHHHHHHHHHhHhhcCCCCChh---------------HHHHHHHHHHhcCCchHHHHHHHH
Q 006672 402 AILTACWY--------SGQVKLALNFFDSMRFDYFIEPSVK---------------HHTVVVNLLSRVGQDSQGYQNSQN 458 (636)
Q Consensus 402 ~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~~~---------------~~~~l~~~~~~~g~~~~A~~~~~~ 458 (636)
.+..++.. .|++++|...|+++.+.+.-.+... .+..++..|.+.|++++|...+++
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 45555555 6666666666666654221111111 125678899999999999999996
Q ss_pred HHHHHhccCCC---CchhHHHHHHHHHHc----------CChhHHHHHHHHHHhCCCccCCeeeEEEECCEEEEecCCCc
Q 006672 459 SFTKLLQLKPK---HPSSYVLLSNIYAAE----------GRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGH 525 (636)
Q Consensus 459 ~~~~~~~l~p~---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~g~~~~~~~s~i~~~~~~~~~~~~~~ 525 (636)
+. +..|+ .+..+..++.+|... |++++|...++++.+.. |+ +
T Consensus 174 ~l----~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--p~-------------------~ 228 (261)
T 3qky_A 174 VF----DAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--PD-------------------S 228 (261)
T ss_dssp HH----HHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC--TT-------------------C
T ss_pred HH----HHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC--CC-------------------C
Confidence 65 45676 345888999999977 89999999999998743 21 4
Q ss_pred ccHHHHHHHHHHHHHHHHH
Q 006672 526 KLAKEIHSKLEDIMAGARE 544 (636)
Q Consensus 526 ~~~~~i~~~l~~l~~~~~~ 544 (636)
|.+.+....+.++...+.+
T Consensus 229 ~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 229 PLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp THHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666544
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.98 E-value=3.8e-09 Score=102.03 Aligned_cols=213 Identities=10% Similarity=0.024 Sum_probs=150.9
Q ss_pred HHHHHHHHhhCCCCC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCcHH
Q 006672 246 LKKAGELFEQMPEKG----VVSWTAMINGFSQNGEAEKALAMFFQMLDA------GVRA-NDFTVVSALSACAKVGALEA 314 (636)
Q Consensus 246 ~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~t~~~ll~~~~~~~~~~~ 314 (636)
+++|++++++....+ ..+|..+...|...|++++|+..|++..+. +-.| ...++..+...+...|++++
T Consensus 24 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 103 (283)
T 3edt_B 24 CKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKE 103 (283)
T ss_dssp HHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHH
Confidence 556666666554333 568999999999999999999999998864 2223 35678888899999999999
Q ss_pred HHHHHHHHHHc------C-CCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCC-----------ChhcHHHHHHHHHHcC
Q 006672 315 GVRVHNYISCN------D-FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK-----------DLLTWTAMIWGLAIHG 376 (636)
Q Consensus 315 a~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g 376 (636)
|...+..+.+. . .+....++..+...|...|++++|...|++..+. ...++..+...|...|
T Consensus 104 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 183 (283)
T 3edt_B 104 AEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183 (283)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Confidence 99999998764 1 2345678889999999999999999999876542 2457888999999999
Q ss_pred ChHHHHHHHHHHhHc-------CCCCCHH-HHHHHHHHHHhcC------cHHHHHHHHHHhHhhcCCCCChhHHHHHHHH
Q 006672 377 RYEQAIQYFKKMMYS-------GTEPDGT-VFLAILTACWYSG------QVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442 (636)
Q Consensus 377 ~~~~A~~~~~~m~~~-------g~~p~~~-t~~~ll~a~~~~g------~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 442 (636)
++++|+..++++.+. ...|... .+..+.......+ .+..+...++.... ..+.....+..++.+
T Consensus 184 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~ 261 (283)
T 3edt_B 184 KYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--DSPTVNTTLRSLGAL 261 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHH
Confidence 999999999998863 1233322 3333333333222 23333333332221 112235678899999
Q ss_pred HHhcCCchHHHHHHHHHH
Q 006672 443 LSRVGQDSQGYQNSQNSF 460 (636)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~ 460 (636)
|.+.|++++|.+.++++.
T Consensus 262 ~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 262 YRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 999999999999998665
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-08 Score=85.91 Aligned_cols=131 Identities=15% Similarity=0.267 Sum_probs=108.8
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHH
Q 006672 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443 (636)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~ 443 (636)
.|..+...+...|++++|+.+++++.+.+ +.+...+..+...+...|++++|..+++++... .+.+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 56778888889999999999999988742 224567778888888999999999999998752 234577888899999
Q ss_pred HhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 444 SRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
.+.|++++|.+.++++. +..|.++..+..++.+|...|++++|...++++.+..
T Consensus 80 ~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKAL----ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HTTTCHHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHhcCHHHHHHHHHHHH----HhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 99999999999998665 4578888899999999999999999999999987643
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.98 E-value=8.1e-08 Score=92.17 Aligned_cols=186 Identities=13% Similarity=0.092 Sum_probs=123.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCC-CCchhHHHHHhhHHhhcCCHHHHHHHHhhcc
Q 006672 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF-GLKGAIGTALVDMYAKCGNIEAASLVFGETK 358 (636)
Q Consensus 280 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 358 (636)
|+..|++....+ .++..++..+..++...|++++|.+++...+..+. ..+...+..++..|.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666666554 45555656667777777888888877777765542 2456677777888888888888888888776
Q ss_pred C--C-----ChhcHHHHHHH--HHHcC--ChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhc
Q 006672 359 E--K-----DLLTWTAMIWG--LAIHG--RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427 (636)
Q Consensus 359 ~--~-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 427 (636)
+ | +..+...+..+ ....| ++.+|..+|+++.+ -.|+..+-..++.++.+.|++++|.+.++.+.+.+
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~--~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ--TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT--TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 5 3 13444555555 22234 88899999999876 44653333444457888999999999988766422
Q ss_pred ----C----CCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhH
Q 006672 428 ----F----IEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSY 474 (636)
Q Consensus 428 ----~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~ 474 (636)
. -+.++.+...+|.+....|+ +|.++++ ++.+..|+++.+.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~----qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTN----QLVKLDHEHAFIK 290 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHH----HHHHTTCCCHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHH----HHHHhCCCChHHH
Confidence 0 13356777677766666776 7777766 4446788876544
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.96 E-value=5.4e-08 Score=93.42 Aligned_cols=238 Identities=8% Similarity=0.011 Sum_probs=163.4
Q ss_pred hcCCHHHHHHHHhhCCCCC-hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Q 006672 242 RKGDLKKAGELFEQMPEKG-VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320 (636)
Q Consensus 242 ~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 320 (636)
-.|.+..++.-...+...+ ...-.-+.++|...|+++.. ..-.|....+..+... ...+ +...++
T Consensus 25 y~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~-~~~~----a~~~l~ 90 (310)
T 3mv2_B 25 YTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQF-LDTK----NIEELE 90 (310)
T ss_dssp TTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHH-HTTT----CCHHHH
T ss_pred HhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHH-hccc----HHHHHH
Confidence 3566666666445443322 22222344667777766532 1223443343333333 3322 566777
Q ss_pred HHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCC-----ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCC
Q 006672 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK-----DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395 (636)
Q Consensus 321 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 395 (636)
..++.+ +++......+..+|...|++++|.+++.+.... +...+..++..+.+.|+.+.|.+.+++|.+ ..|
T Consensus 91 ~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~~ 167 (310)
T 3mv2_B 91 NLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AIE 167 (310)
T ss_dssp HTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSC
T ss_pred HHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCc
Confidence 766555 455566678899999999999999999987543 456788889999999999999999999988 677
Q ss_pred -----CHHHHHHHHHH--HHhcC--cHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhc-
Q 006672 396 -----DGTVFLAILTA--CWYSG--QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQ- 465 (636)
Q Consensus 396 -----~~~t~~~ll~a--~~~~g--~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~- 465 (636)
+..+...+..+ ....| ++.+|..+|+++... .|+......+..++.+.|++++|.+.++.+.+.--+
T Consensus 168 d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~ 244 (310)
T 3mv2_B 168 DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSV 244 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHT
T ss_pred cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 35666677666 33334 899999999999752 355333344444899999999999999854422111
Q ss_pred -----cCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 466 -----LKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 466 -----l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
.+|+|+.++..++.++...|+ +|.++++++++..
T Consensus 245 ~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 245 EQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp TTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 158899999888888888887 8999999999854
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=2e-08 Score=98.07 Aligned_cols=208 Identities=14% Similarity=0.079 Sum_probs=143.0
Q ss_pred CHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCcHHHHHHH
Q 006672 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA----GVRAN-DFTVVSALSACAKVGALEAGVRVH 319 (636)
Q Consensus 245 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~ 319 (636)
++++|...|++. +..|...|++++|+..|.+..+. |-+++ ..++..+..++...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 366666666553 45677788888888888777542 32222 457777888888888888888888
Q ss_pred HHHHHcCC---CC--chhHHHHHhhHHhhc-CCHHHHHHHHhhccC--C---C----hhcHHHHHHHHHHcCChHHHHHH
Q 006672 320 NYISCNDF---GL--KGAIGTALVDMYAKC-GNIEAASLVFGETKE--K---D----LLTWTAMIWGLAIHGRYEQAIQY 384 (636)
Q Consensus 320 ~~~~~~~~---~~--~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~--~---~----~~~~~~li~~~~~~g~~~~A~~~ 384 (636)
+..++... .+ ...+++.+..+|... |++++|...|++..+ | + ..+|+.+...|...|++++|+..
T Consensus 101 ~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 180 (292)
T 1qqe_A 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 87765321 11 145778888889986 999999999988764 1 1 34688889999999999999999
Q ss_pred HHHHhHcCCCCCHH------HHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCCh------hHHHHHHHHHH--hcCCch
Q 006672 385 FKKMMYSGTEPDGT------VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV------KHHTVVVNLLS--RVGQDS 450 (636)
Q Consensus 385 ~~~m~~~g~~p~~~------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~------~~~~~l~~~~~--~~g~~~ 450 (636)
|++..+........ .+..+..++...|++++|...|++..+ +.|+. ..+..++..+. ..++++
T Consensus 181 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~ 257 (292)
T 1qqe_A 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLS 257 (292)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence 99998843222211 466777788899999999999998874 44442 13444556664 456788
Q ss_pred HHHHHHHHHHHHHhccCCCC
Q 006672 451 QGYQNSQNSFTKLLQLKPKH 470 (636)
Q Consensus 451 ~A~~~~~~~~~~~~~l~p~~ 470 (636)
+|++.|++ .++++|.+
T Consensus 258 ~A~~~~~~----~~~l~~~~ 273 (292)
T 1qqe_A 258 EHCKEFDN----FMRLDKWK 273 (292)
T ss_dssp HHHHHHTT----SSCCCHHH
T ss_pred HHHHHhcc----CCccHHHH
Confidence 88887763 33555543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.5e-09 Score=116.24 Aligned_cols=169 Identities=9% Similarity=0.034 Sum_probs=118.0
Q ss_pred HhcCCcHHHHHHHHHHH--------HcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHc
Q 006672 307 AKVGALEAGVRVHNYIS--------CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIH 375 (636)
Q Consensus 307 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 375 (636)
...|++++|.+.++.+. +.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 56677777777777776 322 45566777777777777888888777777664 3566777777777778
Q ss_pred CChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHH
Q 006672 376 GRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGY 453 (636)
Q Consensus 376 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 453 (636)
|++++|++.|++..+ ..|+ ...+..+..++...|++++ .+.|++..+ +.| +...|..+..+|.+.|++++|.
T Consensus 481 g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHH
Confidence 888888888888777 5555 4566777777777888877 777777764 233 4667777777888888888888
Q ss_pred HHHHHHHHHHhccCCCCchhHHHHHHHHHHcCC
Q 006672 454 QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGR 486 (636)
Q Consensus 454 ~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~ 486 (636)
+.++ ++++++|.+..+|..++.+|...|+
T Consensus 555 ~~~~----~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLD----EVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHH----TSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHH----hhcccCcccHHHHHHHHHHHHccCC
Confidence 7776 3446777777777777777766555
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.92 E-value=2e-08 Score=89.75 Aligned_cols=158 Identities=13% Similarity=0.006 Sum_probs=115.8
Q ss_pred HHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHH-HH
Q 006672 333 IGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA-CW 408 (636)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~ 408 (636)
....+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++... ..|+.......... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL--EYQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh--ccCChHHHHHHHHHHHH
Confidence 345566778888999999999988775 4667888888889999999999999988877 44443322221111 11
Q ss_pred hcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCC--chhHHHHHHHHHHcC
Q 006672 409 YSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH--PSSYVLLSNIYAAEG 485 (636)
Q Consensus 409 ~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~--~~~~~~l~~~~~~~g 485 (636)
..+...+|...+++..+ ..| ++..+..+..+|.+.|++++|.+.++++ ++.+|.. +..+..++.+|...|
T Consensus 86 ~~~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~----l~~~p~~~~~~a~~~l~~~~~~~g 158 (176)
T 2r5s_A 86 QQAAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNI----LKVNLGAQDGEVKKTFMDILSALG 158 (176)
T ss_dssp HHHTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH----HTTCTTTTTTHHHHHHHHHHHHHC
T ss_pred hhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH----HHhCcccChHHHHHHHHHHHHHhC
Confidence 22223346778888775 345 4788888999999999999999998854 4667754 568899999999999
Q ss_pred ChhHHHHHHHHHHh
Q 006672 486 RWKDVARVRTLMQR 499 (636)
Q Consensus 486 ~~~~A~~~~~~m~~ 499 (636)
+.++|...+++...
T Consensus 159 ~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 159 QGNAIASKYRRQLY 172 (176)
T ss_dssp SSCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999998887653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.5e-08 Score=111.26 Aligned_cols=195 Identities=11% Similarity=0.054 Sum_probs=155.5
Q ss_pred HhCCChHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhh
Q 006672 272 SQNGEAEKALAMFFQML--------DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343 (636)
Q Consensus 272 ~~~g~~~~A~~l~~~m~--------~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 343 (636)
...|++++|++.|++.. +.. +.+...+..+..++...|++++|...++.+++.. +.+...+..+..+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 78899999999999988 332 3455778888889999999999999999999875 6678899999999999
Q ss_pred cCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHH
Q 006672 344 CGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNF 419 (636)
Q Consensus 344 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 419 (636)
.|++++|.+.|++..+ .+...|..+..+|.+.|++++ ++.|++..+ ..|+ ...+..+..++...|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999998774 467789999999999999999 999999998 5666 56888999999999999999999
Q ss_pred HHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHH-HHHHHHHHHHHhccCCCCchhH
Q 006672 420 FDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQG-YQNSQNSFTKLLQLKPKHPSSY 474 (636)
Q Consensus 420 ~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~~~l~p~~~~~~ 474 (636)
|+++.+ +.|+ ...|..++.+|...|+.+++ .+-++++.+.+..+.+.++...
T Consensus 557 ~~~al~---l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~ 610 (681)
T 2pzi_A 557 LDEVPP---TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVL 610 (681)
T ss_dssp HHTSCT---TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHH
T ss_pred HHhhcc---cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHH
Confidence 998874 5565 67788888888777775555 5666666666666655554433
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.91 E-value=2e-08 Score=96.11 Aligned_cols=207 Identities=10% Similarity=-0.050 Sum_probs=120.2
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCC--CCchhH
Q 006672 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN---DFTVVSALSACAKVGALEAGVRVHNYISCNDF--GLKGAI 333 (636)
Q Consensus 259 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~ 333 (636)
.+...+..+...+.+.|++++|+..|+++.+.. +.+ ...+..+..++...|++++|...++.+++... +.....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 345566667777777788888888887777642 112 45566666667777777777777777766431 122334
Q ss_pred HHHHhhHHhh--------cCCHHHHHHHHhhccC--CC-hhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHH
Q 006672 334 GTALVDMYAK--------CGNIEAASLVFGETKE--KD-LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402 (636)
Q Consensus 334 ~~~li~~~~~--------~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 402 (636)
+..+..+|.+ .|++++|...|+++.+ |+ ...+.++. .+...... -...+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~--------------~~~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQ--------------KIRELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHH--------------HHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHH--------------HHHHHHHH----HHHHHHH
Confidence 4555555555 5555555555555443 21 11111110 00000000 0011245
Q ss_pred HHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhc----------CCchHHHHHHHHHHHHHhccCCCCc
Q 006672 403 ILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRV----------GQDSQGYQNSQNSFTKLLQLKPKHP 471 (636)
Q Consensus 403 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~l~p~~~ 471 (636)
+...+...|++++|...|+.+.+...-.+ ....+..++.+|... |++++|...++++. +..|+++
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~----~~~p~~~ 229 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLL----QIFPDSP 229 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHH----HHCTTCT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHH----HHCCCCh
Confidence 66778888999999999988876332222 245777788888766 88899999888655 5578775
Q ss_pred h---hHHHHHHHHHHcCChh
Q 006672 472 S---SYVLLSNIYAAEGRWK 488 (636)
Q Consensus 472 ~---~~~~l~~~~~~~g~~~ 488 (636)
. ++..+..++.+.|+++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 3 3444555555444443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.91 E-value=5.6e-08 Score=90.71 Aligned_cols=182 Identities=11% Similarity=0.027 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCC-C-chhHHHHHhhHHhhcCCHHHHHHHHhhccC--CCh----hcHHHH
Q 006672 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFG-L-KGAIGTALVDMYAKCGNIEAASLVFGETKE--KDL----LTWTAM 368 (636)
Q Consensus 297 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l 368 (636)
..+......+...|++++|...|+.+++.... + ....+..+..+|.+.|++++|...|++..+ |+. .++..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 34445555666777777777777777764311 1 134566667777777777777777776654 221 133334
Q ss_pred HHHHHH------------------cCChHHHHHHHHHHhHcCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHhHhhcCC
Q 006672 369 IWGLAI------------------HGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFI 429 (636)
Q Consensus 369 i~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 429 (636)
..++.. .|+.++|+..|+++++ ..|+.. ....... .+ .+...+
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~----l~------~~~~~~------ 146 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKR----LV------FLKDRL------ 146 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHH----HH------HHHHHH------
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHH----HH------HHHHHH------
Confidence 444433 2344555555555544 233321 1110000 00 000000
Q ss_pred CCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCc---hhHHHHHHHHHHcCChhHHHHHHHHHHhCCCc
Q 006672 430 EPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHP---SSYVLLSNIYAAEGRWKDVARVRTLMQRRSIK 503 (636)
Q Consensus 430 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 503 (636)
......++..|.+.|++++|...++++. +..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l----~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGML----RDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHH----HHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHH----HHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 0112356778999999999999999665 5578765 57899999999999999999999999886543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.4e-08 Score=97.10 Aligned_cols=163 Identities=10% Similarity=-0.007 Sum_probs=93.8
Q ss_pred CCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHH-HH
Q 006672 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL-AI 403 (636)
Q Consensus 328 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~l 403 (636)
+.+......+...+...|++++|...|++... .+...+..+...+.+.|++++|+..++++.. ..|+..... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHHH
Confidence 33444445555555566666666666655542 2445566666666666666666666666655 344433221 12
Q ss_pred HHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCC--chhHHHHHHHH
Q 006672 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH--PSSYVLLSNIY 481 (636)
Q Consensus 404 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~--~~~~~~l~~~~ 481 (636)
...+...+..++|...+++..+. -+.+...+..+..+|...|++++|.+.++++. +.+|.+ ...+..|+.+|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l----~~~p~~~~~~a~~~l~~~~ 265 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHL----RXDLTAADGQTRXTFQEIL 265 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTGGGGHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHH----hcccccccchHHHHHHHHH
Confidence 22344555556666666666541 12345666667777777777777777666444 446655 66677777777
Q ss_pred HHcCChhHHHHHHHHHH
Q 006672 482 AAEGRWKDVARVRTLMQ 498 (636)
Q Consensus 482 ~~~g~~~~A~~~~~~m~ 498 (636)
...|+.++|...+++..
T Consensus 266 ~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 266 AALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHCTTCHHHHHHHHHH
T ss_pred HHcCCCCcHHHHHHHHH
Confidence 77777777766666543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=8.7e-08 Score=93.13 Aligned_cols=168 Identities=11% Similarity=0.042 Sum_probs=133.9
Q ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC--CChhcHH-HHH
Q 006672 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--KDLLTWT-AMI 369 (636)
Q Consensus 293 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~-~li 369 (636)
+.+...+..+...+...|++++|...++.+++.. |.+...+..+...|.+.|++++|...++++.. |+..... ...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 3445566677777888899999999999888765 56778889999999999999999999999876 4443322 233
Q ss_pred HHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCC
Q 006672 370 WGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448 (636)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~ 448 (636)
..+...++.++|+..+++... ..|+ ...+..+..++...|++++|...|.++.+...-..+...+..++.+|...|+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~--~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVA--ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHhhcccCccHHHHHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 346677888999999999998 5666 5688888999999999999999999998632222236789999999999999
Q ss_pred chHHHHHHHHHHHHH
Q 006672 449 DSQGYQNSQNSFTKL 463 (636)
Q Consensus 449 ~~~A~~~~~~~~~~~ 463 (636)
.++|...++++...+
T Consensus 271 ~~~a~~~~r~al~~~ 285 (287)
T 3qou_A 271 GDALASXYRRQLYAL 285 (287)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHh
Confidence 999999999776553
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.86 E-value=5.5e-08 Score=81.76 Aligned_cols=126 Identities=17% Similarity=0.268 Sum_probs=67.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHh
Q 006672 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342 (636)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 342 (636)
.|..++..|...|++++|+.+|+++.+.+ +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45566666777777777777777766543 2345555556666666666666666666665543 333444444445555
Q ss_pred hcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhH
Q 006672 343 KCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (636)
Q Consensus 343 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 390 (636)
..|++++|.+.|+++.+ .+...|..+...+...|++++|...++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 55555555444444332 2233444444444444444444444444443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=4.7e-09 Score=91.05 Aligned_cols=124 Identities=9% Similarity=0.024 Sum_probs=102.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHh
Q 006672 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSR 445 (636)
Q Consensus 368 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~ 445 (636)
|...+...|++++|+..+++... ..|+ ...+..+...|...|++++|.+.|++..+ +.| ++..|..++.+|.+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYEL 77 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHH
Confidence 34455667889999999999876 5555 44677788899999999999999999986 345 58899999999999
Q ss_pred cCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHH-HHHHHhC
Q 006672 446 VGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARV-RTLMQRR 500 (636)
Q Consensus 446 ~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~ 500 (636)
.|++++|...|+++. +++|.++.+|..++.+|.+.|++++|.+. +++..+.
T Consensus 78 ~~~~~~A~~~~~~al----~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 78 EENTDKAVECYRRSV----ELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp TTCHHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999999998554 67999999999999999999999887765 5777763
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.83 E-value=9.2e-08 Score=85.33 Aligned_cols=157 Identities=13% Similarity=0.097 Sum_probs=113.6
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC--CChhcHHHHHHH-HHHcCC
Q 006672 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWG-LAIHGR 377 (636)
Q Consensus 301 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~-~~~~g~ 377 (636)
.....+...|++++|...++.+++.. |.+...+..+...|.+.|++++|...|++... |+...+..+... +...+.
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~ 89 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAA 89 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcc
Confidence 34445566677777777776665543 45667777888888888888888888888765 333322222211 223233
Q ss_pred hHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC---hhHHHHHHHHHHhcCCchHHH
Q 006672 378 YEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS---VKHHTVVVNLLSRVGQDSQGY 453 (636)
Q Consensus 378 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~ 453 (636)
..+|+..+++..+ ..|+ ...+..+..++...|++++|...|+++.+ ..|+ ...+..++.+|...|+.++|.
T Consensus 90 ~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 90 ESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILK---VNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp SCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred cchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 4467899999988 6676 66888888999999999999999999985 3443 568899999999999999999
Q ss_pred HHHHHHHHHH
Q 006672 454 QNSQNSFTKL 463 (636)
Q Consensus 454 ~~~~~~~~~~ 463 (636)
..|+++...+
T Consensus 165 ~~y~~al~~~ 174 (176)
T 2r5s_A 165 SKYRRQLYSI 174 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999776543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.82 E-value=5.5e-07 Score=94.27 Aligned_cols=374 Identities=10% Similarity=-0.040 Sum_probs=223.5
Q ss_pred CC-ChHHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCC-hHHHHHHHH
Q 006672 76 HK-SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL-LSLGRGLHC 153 (636)
Q Consensus 76 ~g-~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~ 153 (636)
.| +++.|+.+|+... ..+-. |+++.+..+|++.... .|+...|..-+....+.++ .+....+|+
T Consensus 7 ~~~~i~~aR~vyer~l-----------~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe 72 (493)
T 2uy1_A 7 MGVELSSPSAIMEHAR-----------RLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYE 72 (493)
T ss_dssp -----CCHHHHHHHHH-----------HHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHH
T ss_pred cCcchHHHHHHHHHHH-----------HHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 45 3667777776542 22211 8899999999998873 4788888888877766653 456778888
Q ss_pred HHHHh-CCCC-ChhHHHHHHHHHH----hcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCC
Q 006672 154 LIVKS-GVEY-DAFVRVHLADMYV----QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227 (636)
Q Consensus 154 ~~~~~-g~~~-~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 227 (636)
.++.. |..+ +..+|...+..+. ..|+++.+.++|++........-...|......- +......+..++.+
T Consensus 73 ~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~~--- 148 (493)
T 2uy1_A 73 FTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFE-LELNKITGKKIVGD--- 148 (493)
T ss_dssp HHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-HHHCHHHHHHHHHH---
T ss_pred HHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHH-HHhccccHHHHHHH---
Confidence 88775 4333 5677777776654 3467888999999887532111122333322211 11112222222221
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCChhhHHHHHHHHHhCC--C-----hHHHHHHHHHHHHCCCCCCH
Q 006672 228 KNVASWVSLIDGFMRKGDLKKAGELFEQMP----EKGVVSWTAMINGFSQNG--E-----AEKALAMFFQMLDAGVRAND 296 (636)
Q Consensus 228 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g--~-----~~~A~~l~~~m~~~g~~p~~ 296 (636)
.. +.+..|..+++.+. ..+...|...+.--..++ - .+.+..+|+++... .+.+.
T Consensus 149 ------------~~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~ 213 (493)
T 2uy1_A 149 ------------TL--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAE 213 (493)
T ss_dssp ------------HH--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCH
T ss_pred ------------Hh--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCH
Confidence 00 11222222222211 123345655554433221 1 34567788888775 34556
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhcc------------CCChhc
Q 006672 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK------------EKDLLT 364 (636)
Q Consensus 297 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------------~~~~~~ 364 (636)
..|...+.-+...|+.+.|..+++..++. |.+...+...... .+.++. ...+.+... ......
T Consensus 214 ~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~-~e~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~l 288 (493)
T 2uy1_A 214 EVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLV-MDEEAV--YGDLKRKYSMGEAESAEKVFSKELDLL 288 (493)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHH-TTCTHH--HHHHHHHTC----------CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhh-cchhHH--HHHHHHHHHhhccchhhhhcccccHHH
Confidence 77777777777888999999999988877 4554444332221 111111 111211110 012246
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHH-hcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHH
Q 006672 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW-YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443 (636)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~ 443 (636)
|...+....+.++.+.|..+|+++ +. ..++...|......-. ..++.+.|..+|+...+.++ .++..+...++..
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~~~~yid~e 364 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHHHHHHHHHH
Confidence 777777777788899999999999 32 1223444433222112 23469999999999987442 3456677788989
Q ss_pred HhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 444 SRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
.+.|+.+.|..+|+++ +.....|...+..-...|+.+.+..+++++.+
T Consensus 365 ~~~~~~~~aR~l~er~--------~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 365 LRIGDEENARALFKRL--------EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHTCHHHHHHHHHHS--------CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH--------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999865 34667888888888888999999998888764
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=6.4e-08 Score=104.17 Aligned_cols=161 Identities=10% Similarity=-0.047 Sum_probs=121.8
Q ss_pred cCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHH
Q 006672 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYF 385 (636)
Q Consensus 309 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 385 (636)
.|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 478899999999988764 56688899999999999999999999998775 45678999999999999999999999
Q ss_pred HHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhc---CCchHHHHHHHHHHH
Q 006672 386 KKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV---GQDSQGYQNSQNSFT 461 (636)
Q Consensus 386 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 461 (636)
++..+ ..|+ ...+..+..++...|++++|.+.+++..+. .+.+...+..+..++... |++++|.+.++++.
T Consensus 81 ~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al- 155 (568)
T 2vsy_A 81 QQASD--AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV- 155 (568)
T ss_dssp HHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH-
T ss_pred HHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH-
Confidence 99998 4565 568888889999999999999999998852 133577889999999999 99999999988654
Q ss_pred HHhccCCCCchhHHHHH
Q 006672 462 KLLQLKPKHPSSYVLLS 478 (636)
Q Consensus 462 ~~~~l~p~~~~~~~~l~ 478 (636)
+.+|.+...|..++
T Consensus 156 ---~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 156 ---AQGVGAVEPFAFLS 169 (568)
T ss_dssp ---HHTCCCSCHHHHTT
T ss_pred ---hcCCcccChHHHhC
Confidence 56888888887776
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.2e-07 Score=85.65 Aligned_cols=173 Identities=10% Similarity=0.011 Sum_probs=118.3
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC-CChhcHHHHHHHHHHcC----ChHHHHHHHHHHh
Q 006672 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-KDLLTWTAMIWGLAIHG----RYEQAIQYFKKMM 389 (636)
Q Consensus 315 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~ 389 (636)
|.+.|....+.| ++..+..|..+|...+++++|.+.|++..+ .+..++..|...|.. + ++++|+.+|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 334444444332 444555555556666666666666665544 345556666666665 5 7788888888876
Q ss_pred HcCCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHhHhhcCCCCC---hhHHHHHHHHHHh----cCCchHHHHHHHH
Q 006672 390 YSGTEPDGTVFLAILTACWY----SGQVKLALNFFDSMRFDYFIEPS---VKHHTVVVNLLSR----VGQDSQGYQNSQN 458 (636)
Q Consensus 390 ~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~ 458 (636)
+.| +...+..+...|.. .+++++|.++|++..+ ..|. +..+..|..+|.. .+++++|...|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 643 45566666666666 7788888888888763 2342 6777888888888 7889999999987
Q ss_pred HHHHHhccCCCCchhHHHHHHHHHHc-C-----ChhHHHHHHHHHHhCCC
Q 006672 459 SFTKLLQLKPKHPSSYVLLSNIYAAE-G-----RWKDVARVRTLMQRRSI 502 (636)
Q Consensus 459 ~~~~~~~l~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~g~ 502 (636)
+.+ + |.++..+..|+.+|... | ++++|..++++..+.|.
T Consensus 155 A~~----~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSS----L-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHH----T-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHH----c-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 653 3 55777888999998874 3 88999999999888763
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.79 E-value=1.2e-06 Score=85.25 Aligned_cols=164 Identities=13% Similarity=-0.025 Sum_probs=124.5
Q ss_pred HHhhHHhhcCCHHHHHHHHhhccCC-----C----hhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCC-CC----HHHHH
Q 006672 336 ALVDMYAKCGNIEAASLVFGETKEK-----D----LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE-PD----GTVFL 401 (636)
Q Consensus 336 ~li~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~ 401 (636)
..+..+...|++++|...+++..+. + ...+..+...+...|++++|+..|++..+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3467788899999999999887652 1 113334666677778999999999999884222 22 22688
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhHhhc----CCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC--CCCchhH
Q 006672 402 AILTACWYSGQVKLALNFFDSMRFDY----FIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLK--PKHPSSY 474 (636)
Q Consensus 402 ~ll~a~~~~g~~~~a~~~~~~m~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~--p~~~~~~ 474 (636)
.+..+|...|++++|..+|+++.+.. +..+. ...|..++..|.+.|++++|.+.++++.+...+.+ +.-+.+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88899999999999999999987421 11222 45788999999999999999999998876544432 2225789
Q ss_pred HHHHHHHHHcCC-hhHHHHHHHHHHh
Q 006672 475 VLLSNIYAAEGR-WKDVARVRTLMQR 499 (636)
Q Consensus 475 ~~l~~~~~~~g~-~~~A~~~~~~m~~ 499 (636)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999988764
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.7e-07 Score=86.16 Aligned_cols=185 Identities=13% Similarity=0.089 Sum_probs=108.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhh
Q 006672 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDF-TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343 (636)
Q Consensus 265 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 343 (636)
-.....+.+.|++++|+..|++..+. .|+.. .+.. ..... ...........+...|.+
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-----~~~~~--------------~~~~~~~~~~~lg~~~~~ 66 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-----TNVDK--------------NSEISSKLATELALAYKK 66 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-----HHSCT--------------TSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-----hhhcc--------------hhhhhHHHHHHHHHHHHH
Confidence 34455667778888888888777764 33322 1211 00000 001112233446777777
Q ss_pred cCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCc--HHHHH
Q 006672 344 CGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQ--VKLAL 417 (636)
Q Consensus 344 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~--~~~a~ 417 (636)
.|++++|...|++..+ .+...|..+...|...|++++|+..|++.++ +.|+ ..++..+..++...|. .+.+.
T Consensus 67 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~ 144 (208)
T 3urz_A 67 NRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLE 144 (208)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence 7888888877777654 3566777788888888888888888888877 5565 4566666666655543 33445
Q ss_pred HHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 006672 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNI 480 (636)
Q Consensus 418 ~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~ 480 (636)
..++.... ..|....+..+..++...|++++|...|++ .+++.|+ ......|..+
T Consensus 145 ~~~~~~~~---~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~----al~l~P~-~~~~~~l~~i 199 (208)
T 3urz_A 145 TDYKKLSS---PTKMQYARYRDGLSKLFTTRYEKARNSLQK----VILRFPS-TEAQKTLDKI 199 (208)
T ss_dssp HHHC---C---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHH----HTTTSCC-HHHHHHHHHH
T ss_pred HHHHHHhC---CCchhHHHHHHHHHHHHccCHHHHHHHHHH----HHHhCCC-HHHHHHHHHH
Confidence 55544431 222222334455666677888888888774 4467774 4445555554
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.77 E-value=4.9e-08 Score=84.30 Aligned_cols=102 Identities=12% Similarity=0.001 Sum_probs=85.7
Q ss_pred CCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCC
Q 006672 393 TEPDG-TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH 470 (636)
Q Consensus 393 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~ 470 (636)
+.|+. ..+..+...+...|++++|...|++... +.| ++..|..++.+|.+.|++++|.+.|+++. +++|++
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al----~l~P~~ 103 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAF----ALGKND 103 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHSSSC
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHH----hhCCCC
Confidence 55653 4677777888889999999999998885 344 57888899999999999999999988554 679999
Q ss_pred chhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 471 PSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 471 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
+.+|..++.+|...|++++|...|++..+..
T Consensus 104 ~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 104 YTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999988744
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.5e-06 Score=82.61 Aligned_cols=219 Identities=9% Similarity=0.089 Sum_probs=159.1
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHcCCCCchhHHHHHhhHH----hhc-
Q 006672 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG--ALEAGVRVHNYISCNDFGLKGAIGTALVDMY----AKC- 344 (636)
Q Consensus 272 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~- 344 (636)
.+....++|+.++.+++..+ +-+...++.--.++...+ +++++...++.++... |-+..+|+.-...+ .+.
T Consensus 44 ~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 44 KAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcc
Confidence 33444567888888877643 223444555555566666 7888888888887765 44555555444444 444
Q ss_pred --CCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChH--HHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCc-----
Q 006672 345 --GNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYE--QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ----- 412 (636)
Q Consensus 345 --g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~----- 412 (636)
++++++..+++.+.+ +|..+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.-.....+.|.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhh
Confidence 778888888888775 57778888888888888888 999999999985332 45677766666666666
Q ss_pred -HHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchH-HHHHHHHHHHHHhccC---CCCchhHHHHHHHHHHcCCh
Q 006672 413 -VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQ-GYQNSQNSFTKLLQLK---PKHPSSYVLLSNIYAAEGRW 487 (636)
Q Consensus 413 -~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~l~---p~~~~~~~~l~~~~~~~g~~ 487 (636)
+++++++++.++.. -+-+...|+.+..++.+.|+..+ +.++.+ +.++++ |.++.++..++.+|.+.|+.
T Consensus 201 ~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~----~~~~~~~~~~~s~~al~~la~~~~~~~~~ 274 (306)
T 3dra_A 201 TIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSL----QFVDLEKDQVTSSFALETLAKIYTQQKKY 274 (306)
T ss_dssp HHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHH----TTEEGGGTEESCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHH----HHHhccCCCCCCHHHHHHHHHHHHccCCH
Confidence 89999999988852 24467889899999999998655 444554 333444 78889999999999999999
Q ss_pred hHHHHHHHHHHh
Q 006672 488 KDVARVRTLMQR 499 (636)
Q Consensus 488 ~~A~~~~~~m~~ 499 (636)
++|.++++.+.+
T Consensus 275 ~~A~~~~~~l~~ 286 (306)
T 3dra_A 275 NESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999876
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.76 E-value=3.1e-07 Score=84.42 Aligned_cols=129 Identities=13% Similarity=0.095 Sum_probs=80.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcC
Q 006672 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345 (636)
Q Consensus 266 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 345 (636)
.+...|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...++.+++.. |.+...+..+...|...|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 37777777888888888887777653 3356667777777777777777777777777665 455666666666665444
Q ss_pred C--HHHHHHHHhhccCCChh--cHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHH
Q 006672 346 N--IEAASLVFGETKEKDLL--TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398 (636)
Q Consensus 346 ~--~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 398 (636)
. .+.+...++....++.. .|..+..++...|++++|+..|++.++ +.|+..
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~ 191 (208)
T 3urz_A 137 EQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTE 191 (208)
T ss_dssp HHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHH
T ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHH
Confidence 3 34455555555554432 233344455556666777777776666 556543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.76 E-value=1e-07 Score=79.70 Aligned_cols=109 Identities=13% Similarity=0.095 Sum_probs=77.1
Q ss_pred hcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHH
Q 006672 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVV 440 (636)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~ 440 (636)
..|......|.+.|++++|++.|++.++ +.|+ ...|..+..++...|++++|+..|++.++ +.| +...|..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg 88 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIR---LDSKFIKGYIRKA 88 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH---hhhhhhHHHHHHH
Confidence 3556667777777888888888877777 4454 55677777777778888888887777764 233 366777777
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 006672 441 NLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNI 480 (636)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~ 480 (636)
.+|...|++++|.+.|+++ ++++|+++.++..|.++
T Consensus 89 ~~~~~~~~~~~A~~~~~~a----l~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 89 ACLVAMREWSKAQRAYEDA----LQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHH----HHHCTTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHH----HHHCcCCHHHHHHHHHh
Confidence 7888888888887777744 35677777777666554
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.73 E-value=2e-07 Score=85.81 Aligned_cols=127 Identities=10% Similarity=0.007 Sum_probs=86.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHH
Q 006672 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444 (636)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~ 444 (636)
+..+...+...|++++|+..|++.. .|+...+..+..++...|++++|...|++..+. .+.+...|..++.+|.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHH
Confidence 3445555666667777776666652 445566666666667777777777777766642 1234566677777777
Q ss_pred hcCCchHHHHHHHHHHHHHhccCCCCc----------------hhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 445 RVGQDSQGYQNSQNSFTKLLQLKPKHP----------------SSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 445 ~~g~~~~A~~~~~~~~~~~~~l~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
+.|++++|.+.++++. ++.|.+. ..+..++.+|...|++++|.+.+++..+..
T Consensus 83 ~~~~~~~A~~~~~~al----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEAL----IQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHH----HTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHH----HhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 7777777777776544 3445444 788889999999999999999998888754
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.1e-07 Score=91.39 Aligned_cols=181 Identities=10% Similarity=-0.062 Sum_probs=99.7
Q ss_pred HHHhcCCcHHHHHHHHHHHHc----CCC-CchhHHHHHhhHHhhcCCHHHHHHHHhhccC-------C--ChhcHHHHHH
Q 006672 305 ACAKVGALEAGVRVHNYISCN----DFG-LKGAIGTALVDMYAKCGNIEAASLVFGETKE-------K--DLLTWTAMIW 370 (636)
Q Consensus 305 ~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~ 370 (636)
.+...|++++|...+....+. +-+ .-..+++.+..+|.+.|++++|...|++..+ + -..+++.+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444556666666655554432 100 0123455555666666666666555554332 1 1235666666
Q ss_pred HHHHcCChHHHHHHHHHHhHcCCC----CC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhc---CCCCC-hhHHHHHHH
Q 006672 371 GLAIHGRYEQAIQYFKKMMYSGTE----PD-GTVFLAILTACWYSGQVKLALNFFDSMRFDY---FIEPS-VKHHTVVVN 441 (636)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~g~~----p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~-~~~~~~l~~ 441 (636)
.|.. |++++|+..|++..+.... +. ..++..+...+...|++++|...|++..+.. +..+. ...+..++.
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 7766 7777777777776652100 01 2456667777777888888888777776421 11111 235566666
Q ss_pred HHHhcCCchHHHHHHHHHHHHHhccCCCCchh-----HHHHHHHHHHcCChhHHHH
Q 006672 442 LLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSS-----YVLLSNIYAAEGRWKDVAR 492 (636)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~-----~~~l~~~~~~~g~~~~A~~ 492 (636)
++...|++++|...++++ + ++|....+ ...++..| ..|+.+.+.+
T Consensus 204 ~~~~~g~~~~A~~~~~~a----l-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRES----Y-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHTTCHHHHHHHHHHH----T-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH----h-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 777778888888877744 3 45543322 33444444 4566554444
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.4e-07 Score=101.43 Aligned_cols=148 Identities=9% Similarity=-0.050 Sum_probs=107.4
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHH
Q 006672 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353 (636)
Q Consensus 274 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 353 (636)
.|++++|+..|++..+.. +-+...+..+...+...|++++|.+.++...+.. +.+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478889999998887653 3356778888888888999999999999988765 55678888899999999999999999
Q ss_pred HhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhc---CcHHHHHHHHHHhHh
Q 006672 354 FGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYS---GQVKLALNFFDSMRF 425 (636)
Q Consensus 354 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~---g~~~~a~~~~~~m~~ 425 (636)
|++..+ .+...|..+...|...|++++|++.|++..+ ..|+ ...+..+..++... |+.++|.+.+++..+
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ--LLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 988764 4567888888999999999999999999888 4555 56777888888888 899999999998875
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=1e-07 Score=82.32 Aligned_cols=109 Identities=10% Similarity=-0.003 Sum_probs=85.4
Q ss_pred HHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 006672 384 YFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK 462 (636)
Q Consensus 384 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 462 (636)
.|+++.. +.|+ ...+..+...+...|++++|...|+..... -+.+...|..+..+|.+.|++++|.+.++++.
T Consensus 9 ~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-- 82 (148)
T 2vgx_A 9 TIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGA-- 82 (148)
T ss_dssp SHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--
T ss_pred hHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH--
Confidence 3455544 5555 346666777888889999999999888752 23357788888889999999999999888554
Q ss_pred HhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 463 LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 463 ~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
+++|+++..|..++.+|...|++++|...+++..+.
T Consensus 83 --~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 83 --VMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp --HHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --hcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 668999999999999999999999999999988774
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.2e-06 Score=80.54 Aligned_cols=132 Identities=7% Similarity=-0.026 Sum_probs=110.3
Q ss_pred HHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcC
Q 006672 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSG 411 (636)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g 411 (636)
.+..+...+...|++++|...|++...++...|..+...|...|++++|+..|++..+. .|+ ...+..+..++...|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcc
Confidence 34566778889999999999999998888899999999999999999999999999884 454 568888889999999
Q ss_pred cHHHHHHHHHHhHhhcCC-------------CC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCC
Q 006672 412 QVKLALNFFDSMRFDYFI-------------EP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH 470 (636)
Q Consensus 412 ~~~~a~~~~~~m~~~~~~-------------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~ 470 (636)
++++|.+.|++..+...- .| ....+..++.+|.+.|++++|.+.++++ +++.|.+
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a----l~~~p~~ 154 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA----TSMKSEP 154 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH----HTTCCSG
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH----HHcCccc
Confidence 999999999998852211 11 1378899999999999999999999855 4678865
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.1e-06 Score=79.09 Aligned_cols=174 Identities=8% Similarity=-0.024 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcC----CHHHHHHHH
Q 006672 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG----NIEAASLVF 354 (636)
Q Consensus 279 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 354 (636)
+|+.+|++..+.| +...+..+...+...+++++|...|....+.+ ++..+..|..+|.. + +.++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4556666666654 45555566666666677777777777766654 45556666666666 5 777777777
Q ss_pred hhccC-CChhcHHHHHHHHHH----cCChHHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHh----cCcHHHHHHHHHHhH
Q 006672 355 GETKE-KDLLTWTAMIWGLAI----HGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWY----SGQVKLALNFFDSMR 424 (636)
Q Consensus 355 ~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~ 424 (636)
++..+ .+..++..|...|.. .+++++|+.+|++..+.|... +...+..|...|.. .+++++|..+|++..
T Consensus 77 ~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 77 EKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 77654 356677777777766 678888888888887744320 15566677777776 778888888888887
Q ss_pred hhcCCCCChhHHHHHHHHHHhc-C-----CchHHHHHHHHHHHH
Q 006672 425 FDYFIEPSVKHHTVVVNLLSRV-G-----QDSQGYQNSQNSFTK 462 (636)
Q Consensus 425 ~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~ 462 (636)
+ . .+++..+..|..+|... | ++++|...++++.+.
T Consensus 157 ~-~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 157 S-L--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp H-T--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred H-c--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 5 2 34556677788877653 3 788999988877754
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.68 E-value=1e-05 Score=84.67 Aligned_cols=370 Identities=11% Similarity=-0.005 Sum_probs=219.8
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCC--CCCcchHHHHHHHHHhCCC-chHHHHHHHHh
Q 006672 44 TKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT--PKNLHIFNVLIRGLAENSH-FQSCISHFVFM 120 (636)
Q Consensus 44 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m 120 (636)
+..++.++++.+.. +-. |+.+.|..+|++.. .|++..|...+.-..+.+. .+....+|+..
T Consensus 11 i~~aR~vyer~l~~---------------~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~a 74 (493)
T 2uy1_A 11 LSSPSAIMEHARRL---------------YMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFT 74 (493)
T ss_dssp -CCHHHHHHHHHHH---------------HHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHH
T ss_pred hHHHHHHHHHHHHH---------------CCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 55566666666654 221 89999999998765 4788899998887776653 45677888887
Q ss_pred HHC-CCCC-CcccHHHHHHHHH----ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCC
Q 006672 121 LRL-SVRP-NRLTYPFVSKSVA----SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194 (636)
Q Consensus 121 ~~~-g~~p-~~~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 194 (636)
... |..| +...|...+..+. ..++.+.++.+|+.+++.....-..+|......- +......+.++..+..
T Consensus 75 l~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~~~~--- 150 (493)
T 2uy1_A 75 LGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFE-LELNKITGKKIVGDTL--- 150 (493)
T ss_dssp HHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-HHHCHHHHHHHHHHHH---
T ss_pred HHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHH-HHhccccHHHHHHHHh---
Confidence 753 5444 4455555555443 2356788999999999842221122333332221 1122233333332211
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcC--C-----HHHHHHHHhhCCC---CChhhH
Q 006672 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKG--D-----LKKAGELFEQMPE---KGVVSW 264 (636)
Q Consensus 195 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~~~~---~~~~~~ 264 (636)
| .|..- ...++++...+.. .+...|...++.-...+ - .+.+..+|+++.. .....|
T Consensus 151 --~---~y~~a------r~~y~~~~~~~~~---~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW 216 (493)
T 2uy1_A 151 --P---IFQSS------FQRYQQIQPLIRG---WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVY 216 (493)
T ss_dssp --H---HHHHH------HHHHHHHHHHHHT---CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred --H---HHHHH------HHHHHHHHHHHhh---ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHH
Confidence 0 00000 0002222222222 13345555555432211 0 2345566766543 336678
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcC------------CCCchh
Q 006672 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND------------FGLKGA 332 (636)
Q Consensus 265 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~------------~~~~~~ 332 (636)
-..+.-+.+.|+.++|..+|++.... |....+.. .++.....+.. ++.+.+.- ......
T Consensus 217 ~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~ 287 (493)
T 2uy1_A 217 FFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDL 287 (493)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHH
Confidence 88888888999999999999999887 44332211 23222222222 23322210 011235
Q ss_pred HHHHHhhHHhhcCCHHHHHHHHhhccCCC--hhcHHHHHHHHH-HcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHH
Q 006672 333 IGTALVDMYAKCGNIEAASLVFGETKEKD--LLTWTAMIWGLA-IHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACW 408 (636)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~ 408 (636)
+|...+..+.+.++++.|..+|++...++ ...|......-. ..++.+.|..+|+...+. .|+ +..+...+.-..
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~--~~~~~~~~~~yid~e~ 365 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK--HPDSTLLKEEFFLFLL 365 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CCCCHHHHHHHHHHHH
Confidence 66777777777889999999999984333 223332222222 234699999999999884 244 444555666667
Q ss_pred hcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHh
Q 006672 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLL 464 (636)
Q Consensus 409 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 464 (636)
..|+.+.|..+|+++. .....|...++.-.+.|+.+.+.++++++.+.+.
T Consensus 366 ~~~~~~~aR~l~er~~------k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 366 RIGDEENARALFKRLE------KTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp HHTCHHHHHHHHHHSC------CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 8899999999999873 2578889999888889999999999998887554
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.3e-06 Score=83.26 Aligned_cols=168 Identities=10% Similarity=-0.082 Sum_probs=123.9
Q ss_pred hHHHHHhhHHhhcCCHHHHHHHHhhccC--C-Ch------hcHHHHHHHHHHcCChHHHHHHHHHHhHcCC---CCC--H
Q 006672 332 AIGTALVDMYAKCGNIEAASLVFGETKE--K-DL------LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT---EPD--G 397 (636)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~ 397 (636)
..+...+..+...|++++|.+.+.+..+ + .. ..+..+...+...|++++|+..+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445567788889999999888876543 1 11 2344456667788999999999999876321 122 3
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-----hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCC--CC
Q 006672 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-----VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKP--KH 470 (636)
Q Consensus 398 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p--~~ 470 (636)
.+++.+...|...|++++|..+|++..+.....|+ ...|..++..|.+.|++++|.+.++++.+.....+. .-
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47888889999999999999999988732112222 258899999999999999999999988765432211 12
Q ss_pred chhHHHHHHHHHHcCChhHH-HHHHHHHHh
Q 006672 471 PSSYVLLSNIYAAEGRWKDV-ARVRTLMQR 499 (636)
Q Consensus 471 ~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 499 (636)
..+|..++.+|...|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56889999999999999999 777887654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.65 E-value=9.1e-08 Score=92.64 Aligned_cols=191 Identities=10% Similarity=0.009 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHH
Q 006672 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGL 372 (636)
Q Consensus 296 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 372 (636)
...+..+...+...|++++|...+..+++.. +.+...+..+...|.+.|++++|...+++..+ .+...|..+..+|
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3445555556666666666666666666543 44666777777788888888888888877665 3566788888888
Q ss_pred HHcCChHHHHHHHHHHhHcCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchH
Q 006672 373 AIHGRYEQAIQYFKKMMYSGTEPDG-TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQ 451 (636)
Q Consensus 373 ~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 451 (636)
...|++++|+..|++..+ +.|+. ..+...+..... ..++... .... .....++......+...+ .|+.++
T Consensus 83 ~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~~~~~~---~~~~~~~-~~~~-~~~~~~~~~i~~~l~~l~--~~~~~~ 153 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYS--LAKEQRLNFGDDIPSALR---IAKKKRW-NSIE-ERRIHQESELHSYLTRLI--AAERER 153 (281)
T ss_dssp HHTTCHHHHHHHHHHHHH--HHHHTTCCCCSHHHHHHH---HHHHHHH-HHHH-HTCCCCCCHHHHHHHHHH--HHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH--hCccchhhHHHHHHHHHH---HHHHHHH-HHHH-HHHHhhhHHHHHHHHHHH--HHHHHH
Confidence 899999999999988877 33432 111111211111 1111111 1122 133455566555555543 688888
Q ss_pred HHHHHHHHHHHHhccCCCCchhHHHHHHHHHHc-CChhHHHHHHHHHHhC
Q 006672 452 GYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAE-GRWKDVARVRTLMQRR 500 (636)
Q Consensus 452 A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 500 (636)
|.+.+++ .++++|.+......+...+.+. +++++|.++|+++.+.
T Consensus 154 A~~~~~~----al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQR----NHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSG----GGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHh----hhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9888774 4477898888888888878776 7799999999988664
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.65 E-value=5.4e-07 Score=82.04 Aligned_cols=157 Identities=12% Similarity=0.053 Sum_probs=102.5
Q ss_pred hcCCHHHHHH---HHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhH----cCCCCC-HHHHHHHHHHHHhcCcHH
Q 006672 343 KCGNIEAASL---VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY----SGTEPD-GTVFLAILTACWYSGQVK 414 (636)
Q Consensus 343 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~t~~~ll~a~~~~g~~~ 414 (636)
..|++++|.+ .+..-......++..+...+...|++++|+..+++..+ .+..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4567777777 44332223455677777777778888888888777665 122222 346666777788888888
Q ss_pred HHHHHHHHhHhhcCCCC-----ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCC--chhHHHHHHHHHHcCCh
Q 006672 415 LALNFFDSMRFDYFIEP-----SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH--PSSYVLLSNIYAAEGRW 487 (636)
Q Consensus 415 ~a~~~~~~m~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~--~~~~~~l~~~~~~~g~~ 487 (636)
+|...+++..+...-.+ ....+..+...+...|++++|.+.++++.+..-...... ..++..++.+|...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88888887764311122 134577788888888888888888887765433322111 23457888888888999
Q ss_pred hHHHHHHHHHHh
Q 006672 488 KDVARVRTLMQR 499 (636)
Q Consensus 488 ~~A~~~~~~m~~ 499 (636)
++|.+.+++..+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 988888887765
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.64 E-value=5.8e-07 Score=78.79 Aligned_cols=130 Identities=9% Similarity=0.011 Sum_probs=106.0
Q ss_pred hhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHH
Q 006672 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440 (636)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 440 (636)
...|..+...+...|++++|+..|++..+ ..|+ ..++..+..++...|++++|...+++..+. .+.+...|..++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a 88 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 34677788888899999999999999888 4454 667888888899999999999999998852 234577889999
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHH--HHHcCChhHHHHHHHHHHh
Q 006672 441 NLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNI--YAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~ 499 (636)
.++.+.|++++|.+.++++. ++.|.+...+..+..+ +...|++++|...++...+
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~----~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVV----KVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHH----HHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999998655 5689888888555554 8888999999999887654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.62 E-value=3.1e-07 Score=76.69 Aligned_cols=102 Identities=10% Similarity=0.103 Sum_probs=89.8
Q ss_pred CCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCc
Q 006672 393 TEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHP 471 (636)
Q Consensus 393 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~ 471 (636)
+.|+ ...+......+.+.|++++|++.|++..+. -+.++..|..++.+|.+.|++++|++.++++. +++|.++
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al----~~~p~~~ 81 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCI----RLDSKFI 81 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTCH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHH----Hhhhhhh
Confidence 5666 347788889999999999999999999852 23458899999999999999999999998554 6799999
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 472 SSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 472 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
.+|..++.+|...|++++|.+.+++..+.
T Consensus 82 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 82 KGYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999884
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.60 E-value=1.5e-06 Score=80.83 Aligned_cols=187 Identities=10% Similarity=-0.075 Sum_probs=125.0
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCch---hHHH
Q 006672 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR-A-NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG---AIGT 335 (636)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~ 335 (636)
...+..+...+.+.|++++|+..|+++.+.... | ....+..+..++...|++++|...++.+++... .+. ..+.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P-~~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP-THPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCcHHHHHH
Confidence 445667788899999999999999999975321 2 135677788899999999999999999998652 222 2444
Q ss_pred HHhhHHhh------------------cCCHHHHHHHHhhccCC--C-hhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCC
Q 006672 336 ALVDMYAK------------------CGNIEAASLVFGETKEK--D-LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394 (636)
Q Consensus 336 ~li~~~~~------------------~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 394 (636)
.+...|.+ .|+.++|...|+++.+. + ...+.+.... ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l----------~~~~~~~~----- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRL----------VFLKDRLA----- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHH----------HHHHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHH----------HHHHHHHH-----
Confidence 45555543 67899999999998873 2 2233222111 00111110
Q ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCC
Q 006672 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH 470 (636)
Q Consensus 395 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~ 470 (636)
.....+...+...|++++|...|+.+.+.+.-.|. ...+..++.+|.+.|+.++|.+.++++. ...|++
T Consensus 148 ---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~----~~~~~~ 217 (225)
T 2yhc_A 148 ---KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA----ANSSNT 217 (225)
T ss_dssp ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HCCSCC
T ss_pred ---HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH----hhCCCc
Confidence 11224456677889999999999888863322221 3567788888999999999988887444 345544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.60 E-value=4.1e-07 Score=77.77 Aligned_cols=102 Identities=10% Similarity=-0.027 Sum_probs=80.4
Q ss_pred CCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCc
Q 006672 393 TEPDG-TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHP 471 (636)
Q Consensus 393 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~ 471 (636)
..|+. ..+..+...+...|++++|...|+..... -+.+...|..+..+|.+.|++++|...++++. +++|.++
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al----~~~p~~~ 86 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGA----LMDINEP 86 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTCT
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHH----hcCCCCc
Confidence 44543 35566667788888888888888888752 23357778888888999999999998888554 5689899
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 472 SSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 472 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
..|..++.+|...|++++|.+.+++..+.
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 87 RFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999888764
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.59 E-value=3.6e-07 Score=90.90 Aligned_cols=145 Identities=14% Similarity=-0.008 Sum_probs=115.9
Q ss_pred HHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCH----------------HHHHHHHHHH
Q 006672 347 IEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG----------------TVFLAILTAC 407 (636)
Q Consensus 347 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------~t~~~ll~a~ 407 (636)
+++|...|+...+ .+...|..+...|.+.|++++|+..|++.++ +.|+. ..+..+..++
T Consensus 129 ~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 129 FEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444332 2455788888888899999999999999888 44543 6888889999
Q ss_pred HhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCCh
Q 006672 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRW 487 (636)
Q Consensus 408 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~ 487 (636)
...|++++|+..+++..+. -+.+...|..+..+|...|++++|.+.|+++. +++|.+..++..++.++...|++
T Consensus 207 ~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al----~l~P~~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVL----QLYPNNKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH----HHCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999862 23358889999999999999999999998654 67999999999999999999999
Q ss_pred hHH-HHHHHHHHh
Q 006672 488 KDV-ARVRTLMQR 499 (636)
Q Consensus 488 ~~A-~~~~~~m~~ 499 (636)
++| ...++.|..
T Consensus 281 ~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 281 LAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 998 456666643
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.58 E-value=7.4e-07 Score=87.45 Aligned_cols=200 Identities=9% Similarity=-0.011 Sum_probs=146.8
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHH
Q 006672 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352 (636)
Q Consensus 273 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 352 (636)
..|++++|.+++++..+.. +.. + +...++++.|...|..+ ...|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 3577889999998877531 111 0 11146777777777654 456778899999999
Q ss_pred HHhhccC-----CC----hhcHHHHHHHHHHcCChHHHHHHHHHHhHcCC---CCC--HHHHHHHHHHHHhcCcHHHHHH
Q 006672 353 VFGETKE-----KD----LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT---EPD--GTVFLAILTACWYSGQVKLALN 418 (636)
Q Consensus 353 ~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a~~ 418 (636)
.|.+..+ .+ ..+|+.+...|...|++++|+..|++..+.-. .|. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 8887654 12 34788899999999999999999999876211 122 3467788888888 99999999
Q ss_pred HHHHhHhhcCCCC----ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCC--CchhHHHHHHHHHHcCChhHHHH
Q 006672 419 FFDSMRFDYFIEP----SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPK--HPSSYVLLSNIYAAEGRWKDVAR 492 (636)
Q Consensus 419 ~~~~m~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~--~~~~~~~l~~~~~~~g~~~~A~~ 492 (636)
.|++......-.. ....+..+..+|.+.|++++|++.++++.+...+.... ....+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9998875221111 14678899999999999999999999887654332210 12367788888999999999999
Q ss_pred HHHHHH
Q 006672 493 VRTLMQ 498 (636)
Q Consensus 493 ~~~~m~ 498 (636)
.+++..
T Consensus 217 ~~~~al 222 (307)
T 2ifu_A 217 CVRESY 222 (307)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999987
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.57 E-value=1.2e-06 Score=72.17 Aligned_cols=116 Identities=16% Similarity=0.287 Sum_probs=92.3
Q ss_pred hhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHH
Q 006672 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440 (636)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 440 (636)
...|..+...+...|++++|++.|+++.+. .| +..++..+...+...|++++|..+++++.+. .+.+...+..++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la 84 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLG 84 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHH
Confidence 456777888888889999999999988874 34 3567778888888899999999999888752 234577888889
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcC
Q 006672 441 NLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEG 485 (636)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g 485 (636)
..|.+.|++++|.+.++++. +.+|.++..+..++.++...|
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 85 NAYYKQGDYDEAIEYYQKAL----ELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCHHHHHHHHHHHH----HhCCCcHHHHHHHHHHHHhcc
Confidence 99999999999999888655 568888888888888776654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-07 Score=86.69 Aligned_cols=156 Identities=10% Similarity=-0.083 Sum_probs=108.7
Q ss_pred hhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-H----------------
Q 006672 338 VDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-G---------------- 397 (636)
Q Consensus 338 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~---------------- 397 (636)
+......|.++.|.+.++...+ .....|..+...+...|++++|+..|++..+ ..|+ .
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchhhHHHHHHHHHH
Confidence 3344455666666666654433 2445677888889999999999999999987 3333 2
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHH
Q 006672 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLL 477 (636)
Q Consensus 398 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l 477 (636)
..+..+..+|...|++++|...++...+. -+.+...+..++.+|...|++++|.+.++++. +++|.++.++..+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al----~~~p~~~~~~~~l 162 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAA----SLNPNNLDIRNSY 162 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH----HHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHH----HHCCCcHHHHHHH
Confidence 57778888999999999999999999862 23457889999999999999999999998654 6799999999999
Q ss_pred HHHHHHcCChhHHH-HHHHHHHhCC
Q 006672 478 SNIYAAEGRWKDVA-RVRTLMQRRS 501 (636)
Q Consensus 478 ~~~~~~~g~~~~A~-~~~~~m~~~g 501 (636)
+.++...|+.+++. ..+..|...|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 163 ELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999988887776 5555555443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=9.7e-07 Score=73.52 Aligned_cols=120 Identities=12% Similarity=0.006 Sum_probs=99.0
Q ss_pred ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHH
Q 006672 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439 (636)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 439 (636)
+...|..+...+...|++++|+..|++.... .| +...+..+...+...|++++|...++...+. .+.+...+..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~ 86 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHH
Confidence 3456777888888999999999999998873 44 4667888888899999999999999998852 23347788999
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChh
Q 006672 440 VNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWK 488 (636)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~ 488 (636)
+.+|.+.|++++|.+.++++. ++.|.++..+..++.++...|+++
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~----~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKAL----ELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH----HHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCHHHHHHHHHHHH----hcCccchHHHHHHHHHHHHHhcCC
Confidence 999999999999999998655 568999999999999999888753
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.54 E-value=1e-06 Score=73.84 Aligned_cols=118 Identities=14% Similarity=0.030 Sum_probs=98.1
Q ss_pred ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHH
Q 006672 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439 (636)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 439 (636)
+...|..+...+...|++++|+..|++..+ ..| +...+..+...+...|++++|...+++..+. .+.+...+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l 90 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGYTRK 90 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHHHHH
Confidence 456788888899999999999999999987 455 4667888888899999999999999998852 23457888999
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCC
Q 006672 440 VNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGR 486 (636)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~ 486 (636)
+.+|.+.|++++|.+.++++. +++|.+...+..++.++...|+
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~----~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKAL----DLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH----HHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhHHHHHHHHHHHH----HhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999998655 5688888899999988887664
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.9e-06 Score=80.29 Aligned_cols=135 Identities=10% Similarity=-0.064 Sum_probs=92.6
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCC--CChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-----hhhHHHHHHHHHhCC
Q 006672 203 NVLINGCSKIGYLRKAVELFGMMPK--KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG-----VVSWTAMINGFSQNG 275 (636)
Q Consensus 203 ~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~~g 275 (636)
-.+...+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...... ...+..+..++.+.|
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG 185 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLA 185 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCC
Confidence 3455667778888888888877763 333355566667788888888888887665432 235677788888888
Q ss_pred ChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhh
Q 006672 276 EAEKALAMFFQMLDAGVRAN--DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339 (636)
Q Consensus 276 ~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 339 (636)
++++|+..|++.......|. .........++.+.|+.++|..+|+.+.... |+..+..+|.+
T Consensus 186 ~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~aL~~ 249 (282)
T 4f3v_A 186 LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAALKD 249 (282)
T ss_dssp CHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHHHHC
T ss_pred CHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHHhC
Confidence 88888888888875433253 2345556667778888888888888888765 22555555543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.52 E-value=7.4e-06 Score=77.54 Aligned_cols=138 Identities=13% Similarity=-0.055 Sum_probs=97.0
Q ss_pred HHHHHhhHHhhcCCHHHHHHHHhhccC--CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC--HHHHHHHHHHHH
Q 006672 333 IGTALVDMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD--GTVFLAILTACW 408 (636)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~ 408 (636)
+...+..++...|++++|.++|+.+.. |+......+...+.+.|++++|+..|+...... .|. ...+..+..++.
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHH
Confidence 445567778888999999999988875 332355666667888899999999888655421 111 235667777888
Q ss_pred hcCcHHHHHHHHHHhHhhcCCCCC--hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHH
Q 006672 409 YSGQVKLALNFFDSMRFDYFIEPS--VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLL 477 (636)
Q Consensus 409 ~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l 477 (636)
..|++++|+..|++... ....|. .........++.+.|+.++|...|+++. ..+|. ...+..|
T Consensus 183 ~LG~~~eAl~~l~~a~~-g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~----a~~P~-~~~~~aL 247 (282)
T 4f3v_A 183 NLALFTEAERRLTEAND-SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ----TTHPE-PKVAAAL 247 (282)
T ss_dssp HTTCHHHHHHHHHHHHT-STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH----HHSCC-HHHHHHH
T ss_pred HCCCHHHHHHHHHHHhc-CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hcCCc-HHHHHHH
Confidence 88999999999888863 222253 4466777888888899999988888655 45776 5555444
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.2e-05 Score=77.76 Aligned_cols=226 Identities=8% Similarity=-0.066 Sum_probs=138.6
Q ss_pred HHHHHHHhhCCC--C-ChhhHHHHHHHHHhCC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc---CCcHH
Q 006672 247 KKAGELFEQMPE--K-GVVSWTAMINGFSQNG--EAEKALAMFFQMLDAGVRANDFTVVSALSAC----AKV---GALEA 314 (636)
Q Consensus 247 ~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~----~~~---~~~~~ 314 (636)
++|+..++.+.. | +..+|+.-...+...| ++++++++++.+.... +-+...++.--..+ ... +++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 445555554432 2 2345555555555555 6666666666666542 11222232222222 233 56666
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHH--HHHHHHhhccC---CChhcHHHHHHHHHHcCC------hHHHHH
Q 006672 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE--AASLVFGETKE---KDLLTWTAMIWGLAIHGR------YEQAIQ 383 (636)
Q Consensus 315 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~~~~---~~~~~~~~li~~~~~~g~------~~~A~~ 383 (636)
+..+++.+.+.. +-+..+|+.-.-++.+.|.++ ++.+.++++.+ .|..+|+.-...+...|+ ++++++
T Consensus 129 EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~ 207 (306)
T 3dra_A 129 EFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELN 207 (306)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHH
Confidence 666666666554 455666666555566666665 67777776664 456677766666666665 788888
Q ss_pred HHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHH-HHHHHHHhHhhc-CCCCChhHHHHHHHHHHhcCCchHHHHHHHHHH
Q 006672 384 YFKKMMYSGTEPD-GTVFLAILTACWYSGQVKL-ALNFFDSMRFDY-FIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSF 460 (636)
Q Consensus 384 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~-a~~~~~~m~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (636)
.+++++. ..|+ ...|+.+-..+.+.|+... ...+..++.... .-..++..+..++++|.+.|+.++|.+.++.+.
T Consensus 208 ~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 208 YVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 8888888 4454 5677777777777776443 555666554311 113456788889999999999999999998654
Q ss_pred HHHhccCCCCchhHHHHHH
Q 006672 461 TKLLQLKPKHPSSYVLLSN 479 (636)
Q Consensus 461 ~~~~~l~p~~~~~~~~l~~ 479 (636)
+ +.+|-....|...++
T Consensus 286 ~---~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 286 S---KYNPIRSNFWDYQIS 301 (306)
T ss_dssp H---TTCGGGHHHHHHHHH
T ss_pred h---ccChHHHHHHHHHHh
Confidence 3 368877777776543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.48 E-value=9.3e-07 Score=78.69 Aligned_cols=121 Identities=8% Similarity=0.076 Sum_probs=96.7
Q ss_pred HHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHH-HHhcCCc-
Q 006672 373 AIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL-LSRVGQD- 449 (636)
Q Consensus 373 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~-~~~~g~~- 449 (636)
...|++++|+..+++..+ ..|+ ...+..+...|...|++++|...|++..+.. +.+...+..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcc
Confidence 456788889999988887 3454 5688888888999999999999999887521 2357788888888 7789998
Q ss_pred -hHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 450 -SQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 450 -~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
++|...++++. +++|.++..+..++.+|...|++++|...++++.+..
T Consensus 97 ~~~A~~~~~~al----~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 97 TAQTRAMIDKAL----ALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHH----HhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999988655 5689999999999999999999999999999998854
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.47 E-value=3.6e-07 Score=78.82 Aligned_cols=101 Identities=9% Similarity=0.010 Sum_probs=85.7
Q ss_pred ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHH
Q 006672 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTV 438 (636)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 438 (636)
+...|..+...+.+.|++++|+..|+++.. ..|+ ...|..+..+|...|++++|...|++..+ +.| ++..|..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~---l~P~~~~~~~~ 109 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA---LGKNDYTPVFH 109 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSSSCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh---hCCCCcHHHHH
Confidence 455788888899999999999999999998 5676 66888888999999999999999999986 344 4788999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHHhccCCCC
Q 006672 439 VVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH 470 (636)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~ 470 (636)
++.+|.+.|++++|.+.|+++. ++.|++
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al----~l~~~~ 137 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVI----QHSNDE 137 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH----HHCCCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH----HhCCCH
Confidence 9999999999999999998665 556754
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=9.1e-07 Score=76.20 Aligned_cols=106 Identities=15% Similarity=0.152 Sum_probs=86.2
Q ss_pred ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHH
Q 006672 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTV 438 (636)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 438 (636)
+...+..+...+...|++++|+..|++... ..|+ ...|..+..+|...|++++|...|++..+ +.| ++..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~ 94 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV---MDIXEPRFPFH 94 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCTHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCchHHHH
Confidence 455677788889999999999999999988 5564 66788888899999999999999999885 334 5778889
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHH
Q 006672 439 VVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYV 475 (636)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~ 475 (636)
++.+|...|++++|.+.|+++. ++.|.++....
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al----~~~p~~~~~~~ 127 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQ----ELIANXPEFXE 127 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH----HHHTTCGGGHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH----HHCcCCCcchH
Confidence 9999999999999999998654 56777665543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.39 E-value=2.3e-06 Score=77.73 Aligned_cols=82 Identities=12% Similarity=0.018 Sum_probs=42.7
Q ss_pred hcCCHHHHHH---HHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCCcH
Q 006672 242 RKGDLKKAGE---LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD----AGVRA-NDFTVVSALSACAKVGALE 313 (636)
Q Consensus 242 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p-~~~t~~~ll~~~~~~~~~~ 313 (636)
..|++++|.+ .+..-+.....++..+...|...|++++|+..+++... .+..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 44443323355666666777777777777777766654 11111 1233444444555555555
Q ss_pred HHHHHHHHHH
Q 006672 314 AGVRVHNYIS 323 (636)
Q Consensus 314 ~a~~~~~~~~ 323 (636)
+|...+....
T Consensus 84 ~A~~~~~~al 93 (203)
T 3gw4_A 84 AARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555444
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.5e-05 Score=77.37 Aligned_cols=172 Identities=9% Similarity=-0.065 Sum_probs=111.5
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhH
Q 006672 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340 (636)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 340 (636)
...+...+..+...|++++|++.+.+..+.... ...... ....+..+...
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~-----------------------------~~~~~~~~~~~ 124 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQ-----------------------------FLQWQYYVAAY 124 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHH-----------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHH-----------------------------HHHHHHHHHHH
Confidence 344555666677777777777777766654211 111100 00112234445
Q ss_pred HhhcCCHHHHHHHHhhccC-----CC----hhcHHHHHHHHHHcCChHHHHHHHHHHhHc-CCCCC-----HHHHHHHHH
Q 006672 341 YAKCGNIEAASLVFGETKE-----KD----LLTWTAMIWGLAIHGRYEQAIQYFKKMMYS-GTEPD-----GTVFLAILT 405 (636)
Q Consensus 341 ~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~-----~~t~~~ll~ 405 (636)
|...|++++|...|++..+ .+ ..+|+.+...|...|++++|+..|++..+. ...|+ ..++..+..
T Consensus 125 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~ 204 (293)
T 2qfc_A 125 VLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAK 204 (293)
T ss_dssp HHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHH
Confidence 5566666666666655432 11 347788888888999999999999888731 01222 147788888
Q ss_pred HHHhcCcHHHHHHHHHHhHhhc---CCCC-ChhHHHHHHHHHHhcCCchHH-HHHHHHHHHH
Q 006672 406 ACWYSGQVKLALNFFDSMRFDY---FIEP-SVKHHTVVVNLLSRVGQDSQG-YQNSQNSFTK 462 (636)
Q Consensus 406 a~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 462 (636)
.|...|++++|..++++..+.. +... ....|..++.+|.+.|++++| ...++++..-
T Consensus 205 ~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 205 ALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 9999999999999999876421 1111 167889999999999999999 7778866543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=7.2e-05 Score=73.24 Aligned_cols=231 Identities=10% Similarity=0.051 Sum_probs=153.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHcCCCCchhHHHHHhhHHh
Q 006672 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG-ALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342 (636)
Q Consensus 264 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 342 (636)
++.+-....+.+..++|++++.+++..+ +-+...++.--..+...+ .++++..+++.+++.. +-+..+|+.-...+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3444444455566677888888887753 224444555555555666 4788888888887665 556667766666666
Q ss_pred hc-C-CHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChH--------HHHHHHHHHhHcCCCCCHHHHHHHHHHHHh
Q 006672 343 KC-G-NIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYE--------QAIQYFKKMMYSGTEPDGTVFLAILTACWY 409 (636)
Q Consensus 343 ~~-g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 409 (636)
+. + +.+++.++++.+.+ +|..+|+--.-.+.+.|.++ ++++.++++.+.... |...|+.....+.+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVS 213 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTT
T ss_pred HhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 65 5 77888888888876 45567776666666656565 899999999884322 46677777777777
Q ss_pred cCc-------HHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCc--------------------hHHHHHHHHHHHH
Q 006672 410 SGQ-------VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQD--------------------SQGYQNSQNSFTK 462 (636)
Q Consensus 410 ~g~-------~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~ 462 (636)
.+. ++++++++++++. -.+-+...|+.+-.++.+.|+- .+..++..+....
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSD 291 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-
T ss_pred ccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhc
Confidence 765 7888888888875 1234577788777788877765 1122221111100
Q ss_pred H--hccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 463 L--LQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 463 ~--~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
. .+.++.++..+..|+.+|...|+.++|.++++.+.+
T Consensus 292 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 292 PLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 0 011246777888999999999999999999999864
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.38 E-value=3.3e-06 Score=70.22 Aligned_cols=95 Identities=6% Similarity=0.017 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHH
Q 006672 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLS 478 (636)
Q Consensus 399 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~ 478 (636)
.+......+...|++++|...|++..+. -+.+...|..++.+|.+.|++++|.+.++++. +++|.++..|..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al----~~~p~~~~~~~~lg 79 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAI----EKDPNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHH----HhCCCcHHHHHHHH
Confidence 4555555666677777777777666641 12345667777777777777777777776443 55777777777777
Q ss_pred HHHHHcCChhHHHHHHHHHHh
Q 006672 479 NIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~ 499 (636)
.+|...|++++|...+++..+
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHH
Confidence 777777777777777777765
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.37 E-value=5.2e-07 Score=94.29 Aligned_cols=122 Identities=10% Similarity=0.058 Sum_probs=97.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHH
Q 006672 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLL 443 (636)
Q Consensus 366 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~ 443 (636)
..+...+.+.|++++|++.|++..+ ..|+ ...+..+..++...|++++|.+.+++..+ +.| +...|..++.+|
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRAASN 84 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHH
Confidence 3344456678899999999999988 4565 66888888999999999999999999885 344 578899999999
Q ss_pred HhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHH--HHHcCChhHHHHHHHH
Q 006672 444 SRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNI--YAAEGRWKDVARVRTL 496 (636)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 496 (636)
.+.|++++|.+.++++. +++|++...+..++.+ +.+.|++++|.+.+++
T Consensus 85 ~~~g~~~eA~~~~~~al----~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 85 MALGKFRAALRDYETVV----KVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHTCHHHHHHHHHHHH----HHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHcCCHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999998665 5689999999999888 8889999999999874
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.8e-06 Score=73.73 Aligned_cols=136 Identities=11% Similarity=0.093 Sum_probs=92.8
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHhHcCCC-CC----HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC----hh
Q 006672 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE-PD----GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS----VK 434 (636)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~ 434 (636)
++..+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+++..+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4556666677777777777777776552110 11 135666677777888888888888776542211111 45
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC--CCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 435 HHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLK--PKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
.+..+...+...|++++|.+.++++.+...+.. +.....+..++.+|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 677788888899999999999887775543332 12245788899999999999999999988765
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.36 E-value=6.7e-06 Score=71.82 Aligned_cols=127 Identities=9% Similarity=0.021 Sum_probs=89.3
Q ss_pred hHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHH
Q 006672 332 AIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTAC 407 (636)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~ 407 (636)
..+..+...+...|++++|...|++... .+..+|..+...+...|++++|+..+++..+ ..|+ ...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHH
Confidence 3455566667777777777777776543 3566777888888888888888888888887 3444 56777777888
Q ss_pred HhcCcHHHHHHHHHHhHhhcCCCCChhHH--HHHHHHHHhcCCchHHHHHHHHHHHH
Q 006672 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHH--TVVVNLLSRVGQDSQGYQNSQNSFTK 462 (636)
Q Consensus 408 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~ 462 (636)
...|++++|...|++..+.. +.+...+ ..++..+.+.|++++|.+.+++..+.
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 88888888888888887522 1233344 33444477788888888888765443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.36 E-value=1.1e-06 Score=84.97 Aligned_cols=15 Identities=7% Similarity=0.073 Sum_probs=6.9
Q ss_pred CChHHHHHHHHHHhH
Q 006672 376 GRYEQAIQYFKKMMY 390 (636)
Q Consensus 376 g~~~~A~~~~~~m~~ 390 (636)
|+.++|++.+++..+
T Consensus 149 ~~~~~A~~~~~~al~ 163 (281)
T 2c2l_A 149 AERERELEECQRNHE 163 (281)
T ss_dssp HHHHHHHTTTSGGGT
T ss_pred HHHHHHHHHHHhhhc
Confidence 444444444444443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.36 E-value=4.5e-06 Score=69.36 Aligned_cols=110 Identities=8% Similarity=-0.057 Sum_probs=89.3
Q ss_pred hcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHH
Q 006672 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVV 440 (636)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~ 440 (636)
..|..+...+.+.|++++|+..|++.++ ..|+ ...+..+..++...|++++|...+++..+ +.| +...|..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg 79 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE---KDPNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCcHHHHHHHH
Confidence 4567778888899999999999999988 4555 66888888899999999999999999885 334 477889999
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHhccC------CCCchhHHHHHHHH
Q 006672 441 NLLSRVGQDSQGYQNSQNSFTKLLQLK------PKHPSSYVLLSNIY 481 (636)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~~~~~~l~------p~~~~~~~~l~~~~ 481 (636)
.+|...|++++|.+.++++. +++ |.+...+..+..+.
T Consensus 80 ~~~~~~~~~~~A~~~~~~al----~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAAR----TKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHH----HHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHH----HhCcccCCchhHHHHHHHHHHHH
Confidence 99999999999999998665 456 77777776666554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.36 E-value=5.6e-05 Score=73.31 Aligned_cols=198 Identities=7% Similarity=0.060 Sum_probs=106.6
Q ss_pred CCCChhHHHHHHHHhhcCCChHHHHHHhccCCCCCcch---HHHHHHHHHhCCCchHHHHHHHHhHHCCC-CCCcc----
Q 006672 59 LFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI---FNVLIRGLAENSHFQSCISHFVFMLRLSV-RPNRL---- 130 (636)
Q Consensus 59 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~---- 130 (636)
..|+..+...+...+.-.- ..+|..-...+... +...+..+...|++++|..++++..+... .|+..
T Consensus 42 ~~~~~~~l~~i~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~ 116 (293)
T 3u3w_A 42 VYPSMDILQGIAAKLQIPI-----IHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQ 116 (293)
T ss_dssp CCCCHHHHHHHHHHHTCCT-----HHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCcCH-----HHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHH
Confidence 3566666655555544321 12333322222322 33345677788888888888888776321 12211
Q ss_pred cHHHHHHHHHccCChHHHHHHHHHHHHhCCC-CC----hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHH
Q 006672 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVE-YD----AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205 (636)
Q Consensus 131 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 205 (636)
.+..+...+...++++.|...+..+++.... ++ ..+++.+...|...|++++|...|++..+
T Consensus 117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~------------- 183 (293)
T 3u3w_A 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK------------- 183 (293)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------
Confidence 1122344445556777777777777764322 22 12466667777777777777776665541
Q ss_pred HHHHHhcCChHHHHHHHhhCCCC---ChHHHHHHHHHHHhcCCHHHHHHHHhhCC-------CCC--hhhHHHHHHHHHh
Q 006672 206 INGCSKIGYLRKAVELFGMMPKK---NVASWVSLIDGFMRKGDLKKAGELFEQMP-------EKG--VVSWTAMINGFSQ 273 (636)
Q Consensus 206 i~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~--~~~~~~li~~~~~ 273 (636)
.++..... ...++..+...|.+.|++++|...+++.. ... ..+|..+...|.+
T Consensus 184 ---------------~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~ 248 (293)
T 3u3w_A 184 ---------------QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK 248 (293)
T ss_dssp ---------------HHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHH
T ss_pred ---------------HHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 00000000 11234445555555555555555554432 111 4577888888888
Q ss_pred CCC-hHHHHHHHHHHHH
Q 006672 274 NGE-AEKALAMFFQMLD 289 (636)
Q Consensus 274 ~g~-~~~A~~l~~~m~~ 289 (636)
.|+ +++|.+.|++...
T Consensus 249 ~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 249 LEYEEAEIEDAYKKASF 265 (293)
T ss_dssp TTCCHHHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHHHHH
Confidence 884 5888888877654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=8.4e-06 Score=66.25 Aligned_cols=110 Identities=12% Similarity=0.000 Sum_probs=75.6
Q ss_pred hcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHH
Q 006672 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441 (636)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 441 (636)
..|..+...+...|++++|+..|++... ..| +...+..+...+...|++++|...+++..+. .+.+...+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~ 80 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 4566667777777888888888887776 334 3556666777777778888888877777642 1234667777777
Q ss_pred HHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 006672 442 LLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNI 480 (636)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~ 480 (636)
+|.+.|++++|.+.++++ ++++|.++..+..++.+
T Consensus 81 ~~~~~~~~~~A~~~~~~~----~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEG----LKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHTTCHHHHHHHHHHH----HTTCTTCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHH----HHcCCCCHHHHHHHHHh
Confidence 788888888887777644 36677777666666554
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.33 E-value=3.5e-06 Score=71.84 Aligned_cols=118 Identities=12% Similarity=0.077 Sum_probs=90.0
Q ss_pred HHhhccCC---ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcC
Q 006672 353 VFGETKEK---DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428 (636)
Q Consensus 353 ~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 428 (636)
.|+++... +...+..+...+.+.|++++|+..|++... ..|+ ...|..+..++...|++++|...|++..+.
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-- 81 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM-- 81 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--
Confidence 44444442 344666777888899999999999999988 5565 567888888999999999999999999852
Q ss_pred CCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHH
Q 006672 429 IEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLS 478 (636)
Q Consensus 429 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~ 478 (636)
-+.++..+..++.+|...|++++|.+.++++. ++.|.++.......
T Consensus 82 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al----~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 82 DINEPRFPFHAAECHLQLGDLDGAESGFYSAR----ALAAAQPAHEALAA 127 (142)
T ss_dssp CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHHHTCGGGHHHHH
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCCCCcchHHHHH
Confidence 23357788899999999999999999998655 55777776655443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.33 E-value=3.7e-06 Score=67.72 Aligned_cols=98 Identities=5% Similarity=-0.016 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCC--CchhHH
Q 006672 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPK--HPSSYV 475 (636)
Q Consensus 398 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~--~~~~~~ 475 (636)
..+..+...+...|++++|...+++..+. .+.+...+..++.++.+.|++++|.+.++++. ++.|. +...+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~~~~~ 80 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVI----NVIEDEYNKDVWA 80 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HTSCCTTCHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHH----HhCcccchHHHHH
Confidence 35555666677777777777777777642 12346677777888888888888888877544 56787 788888
Q ss_pred HHHHHHHHc-CChhHHHHHHHHHHhCC
Q 006672 476 LLSNIYAAE-GRWKDVARVRTLMQRRS 501 (636)
Q Consensus 476 ~l~~~~~~~-g~~~~A~~~~~~m~~~g 501 (636)
.++.+|... |++++|.+.+++..+..
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 888888888 88888888888887654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.32 E-value=2.1e-06 Score=89.75 Aligned_cols=119 Identities=9% Similarity=0.065 Sum_probs=87.0
Q ss_pred HHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHh
Q 006672 334 GTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWY 409 (636)
Q Consensus 334 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~ 409 (636)
+..+...|.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|++.+++..+ +.|+ ...+..+..+|..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 34455667778888888888887654 3567888888888889999999999998888 5565 5677888888888
Q ss_pred cCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHH--HHhcCCchHHHHHHH
Q 006672 410 SGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNL--LSRVGQDSQGYQNSQ 457 (636)
Q Consensus 410 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~--~~~~g~~~~A~~~~~ 457 (636)
.|++++|.+.|++..+. .| +...+..+..+ +.+.|++++|.+.++
T Consensus 87 ~g~~~eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999888752 33 34455555555 778888888888876
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.31 E-value=6.4e-06 Score=72.16 Aligned_cols=109 Identities=11% Similarity=0.022 Sum_probs=90.2
Q ss_pred ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHH
Q 006672 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTV 438 (636)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 438 (636)
+...|..+...+...|++++|+..|++.++ ..|+ ...+..+..+|...|++++|+..|++..+ +.| +...|..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~ 84 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATV---VDPKYSKAWSR 84 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 445678888889999999999999999988 5564 66888888899999999999999999885 334 4788999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHH
Q 006672 439 VVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLS 478 (636)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~ 478 (636)
+..+|.+.|++++|.+.++++. +++|++...|...+
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al----~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGI----EAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH----HHHSSSCCHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHH----HhCCCchHHHHHHH
Confidence 9999999999999999998655 56888887665544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=9e-06 Score=69.39 Aligned_cols=114 Identities=15% Similarity=0.030 Sum_probs=88.5
Q ss_pred CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhH
Q 006672 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD----GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435 (636)
Q Consensus 360 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 435 (636)
.+...|..+...+...|++++|+..|++..+ ..|+ ...+..+..++...|++++|...+++..+. .+.+...
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 101 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKA 101 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHH
Confidence 3566778888888889999999999999887 5666 457777778888899999999999888752 1235777
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 006672 436 HTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIY 481 (636)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~ 481 (636)
+..+..+|.+.|++++|.+.++++. +++|.+...+..+..+.
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al----~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCV----SLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH----HHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH----HcCCCcHHHHHHHHHHH
Confidence 8888888999999999998888554 56888777776666554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=3.1e-06 Score=69.90 Aligned_cols=95 Identities=11% Similarity=-0.056 Sum_probs=77.2
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHH
Q 006672 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLS 478 (636)
Q Consensus 400 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~ 478 (636)
+..+...+...|++++|...|++..+ ..| +...|..+..++.+.|++++|+..++++ ++++|+++..+..++
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a----l~l~P~~~~~~~~la 92 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ---KEPEREEAWRSLGLTQAENEKDGLAIIALNHA----RMLDPKDIAVHAALA 92 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH----HHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHhCCCCHHHHHHHH
Confidence 44556677788888999888888875 334 5778888889999999999999988855 467899999999999
Q ss_pred HHHHHcCChhHHHHHHHHHHhCC
Q 006672 479 NIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
.+|...|++++|...+++..+..
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 93 VSHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999887643
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.31 E-value=7.6e-06 Score=68.95 Aligned_cols=99 Identities=6% Similarity=-0.057 Sum_probs=77.1
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHH
Q 006672 396 DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYV 475 (636)
Q Consensus 396 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~ 475 (636)
+...+..+...+...|++++|...|+..... .+.+...|..++.+|...|++++|...++++. +++|.++..|.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al----~~~p~~~~~~~ 81 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRAL----ELDGQSVKAHF 81 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTCHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHH----HhCchhHHHHH
Confidence 3556777777788888888888888877652 12346778888888888888888888887554 56788888888
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 476 LLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 476 ~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
.++.+|...|++++|...+++..+.
T Consensus 82 ~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 8888888888888888888888764
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.7e-06 Score=70.98 Aligned_cols=93 Identities=6% Similarity=-0.007 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCc-------
Q 006672 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHP------- 471 (636)
Q Consensus 400 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~------- 471 (636)
+..+...+.+.|++++|+..|++..+ +.| ++..|..++.+|.+.|++++|++.++++.+ ++|++.
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~---~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~----~~~~~~~~~~~~a 83 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIE---LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE----VGRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHHHTTCCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH----hCcccchhhHHHH
Confidence 33344444444444444444444443 122 244444455555555555555555543332 222221
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 472 SSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 472 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
.+|..++.+|...|++++|++.+++..+
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2444555555555556665555555544
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.29 E-value=3.1e-05 Score=79.80 Aligned_cols=125 Identities=8% Similarity=-0.011 Sum_probs=60.0
Q ss_pred HcCChHHHHHHHHHHhH----cCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC----ChhHHHHHHHHHH
Q 006672 374 IHGRYEQAIQYFKKMMY----SGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP----SVKHHTVVVNLLS 444 (636)
Q Consensus 374 ~~g~~~~A~~~~~~m~~----~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~l~~~~~ 444 (636)
..|++++|+.++++... .+..+. ..++..+...+...|++++|..+++.+.....-.. ....|..++.+|.
T Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (434)
T 4b4t_Q 107 VPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYH 186 (434)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 34555555555554432 122222 23444555555566666666665555443211111 1345555566666
Q ss_pred hcCCchHHHHHHHHHHHHHhccCCC---CchhHHHHHHHHHHcCChhHHHHHHHHHH
Q 006672 445 RVGQDSQGYQNSQNSFTKLLQLKPK---HPSSYVLLSNIYAAEGRWKDVARVRTLMQ 498 (636)
Q Consensus 445 ~~g~~~~A~~~~~~~~~~~~~l~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 498 (636)
..|++++|..+++++.........+ -...+..++..+...|++++|...+.+..
T Consensus 187 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 187 KLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 6666666666665554333222111 01344455555555666666655555443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.28 E-value=6.1e-06 Score=72.28 Aligned_cols=99 Identities=9% Similarity=0.004 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHH
Q 006672 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVL 476 (636)
Q Consensus 397 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~ 476 (636)
...+..+...+...|++++|...|++..+. .+.+...|..+..+|.+.|++++|++.++++. +++|.++..|..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al----~~~p~~~~~~~~ 84 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELAT----VVDPKYSKAWSR 84 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHH----HhCCCCHHHHHH
Confidence 457778888999999999999999999862 13368899999999999999999999998655 679999999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 477 LSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 477 l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
++.+|...|++++|.+.+++..+..
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999999998743
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.27 E-value=7.6e-06 Score=69.89 Aligned_cols=66 Identities=8% Similarity=0.016 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHH---HhccCCCCchhH----HHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 435 HHTVVVNLLSRVGQDSQGYQNSQNSFTK---LLQLKPKHPSSY----VLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~l~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
.|..+..++.+.|++++|+..++++.+. ..+++|+++..| ...+.++...|++++|+..|++..+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7888888999999999999988866532 334599999999 99999999999999999999999873
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.26 E-value=7.6e-06 Score=68.20 Aligned_cols=96 Identities=11% Similarity=0.025 Sum_probs=74.8
Q ss_pred hcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcC-CCCC----hhHH
Q 006672 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYF-IEPS----VKHH 436 (636)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-~~p~----~~~~ 436 (636)
.++..+...+.+.|++++|+..|++.++ +.|+ ...|..+..+|...|++++|++.+++..+... ..++ ...|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 4567788888899999999999999888 5666 56788888889999999999999988764211 1111 2467
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHH
Q 006672 437 TVVVNLLSRVGQDSQGYQNSQNSF 460 (636)
Q Consensus 437 ~~l~~~~~~~g~~~~A~~~~~~~~ 460 (636)
..++.++...|++++|++.|+++.
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 788889999999999999998665
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.24 E-value=3.7e-06 Score=74.70 Aligned_cols=116 Identities=12% Similarity=0.097 Sum_probs=57.7
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhH-HhhcCCH--HH
Q 006672 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM-YAKCGNI--EA 349 (636)
Q Consensus 273 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~~ 349 (636)
..|++++|+..|++..+.. +.+...+..+...+...|+++.|...+..+.+.. +.+...+..+..+ |...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3455555555555555432 2344455555555555555555555555555443 2344444445554 4455554 55
Q ss_pred HHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhH
Q 006672 350 ASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (636)
Q Consensus 350 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 390 (636)
|...|++..+ .+...|..+...|...|++++|+..|+++.+
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 5555554432 2334455555555555555555555555555
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.23 E-value=6.3e-06 Score=85.65 Aligned_cols=131 Identities=11% Similarity=-0.006 Sum_probs=103.7
Q ss_pred ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC----------------HHHHHHHHHHHHhcCcHHHHHHHHHHhH
Q 006672 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD----------------GTVFLAILTACWYSGQVKLALNFFDSMR 424 (636)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 424 (636)
....|..+...|.+.|++++|+..|++.++ +.|+ ...|..+..+|.+.|++++|+..+++..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 345677788888888999999999998887 3444 3678888899999999999999999998
Q ss_pred hhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHH-HHHHHHh
Q 006672 425 FDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVAR-VRTLMQR 499 (636)
Q Consensus 425 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~m~~ 499 (636)
+. -+.+...|..+..+|...|++++|...|+++ ++++|.+..++..++.++...|++++|.+ .+++|..
T Consensus 345 ~~--~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~a----l~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 345 GL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKV----LEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH----HTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hc--CCccHHHHHHHHHHHHHccCHHHHHHHHHHH----HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 62 2335788999999999999999999999855 57899999999999999999999988764 4555544
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=1.4e-05 Score=64.89 Aligned_cols=99 Identities=11% Similarity=0.071 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHH
Q 006672 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVL 476 (636)
Q Consensus 397 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~ 476 (636)
...+..+...+...|++++|...++..... .+.+...+..++..+.+.|++++|.+.++++. ++.|.++..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~ 77 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV----DLKPDWGKGYSR 77 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH----HHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHH----HhCcccHHHHHH
Confidence 456777788899999999999999999852 23467889999999999999999999998665 568999999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 477 LSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 477 l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
++.+|...|++++|.+.+++..+.+
T Consensus 78 ~a~~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 78 KAAALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 9999999999999999999998754
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.21 E-value=2.6e-05 Score=63.92 Aligned_cols=61 Identities=15% Similarity=0.233 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 006672 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323 (636)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 323 (636)
..|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 70 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344445555555555555555555554431 2233333334444444444444444444433
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.3e-05 Score=66.93 Aligned_cols=98 Identities=10% Similarity=0.090 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHH
Q 006672 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVL 476 (636)
Q Consensus 397 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~ 476 (636)
...+..+...+...|++++|...|++..+. .+.+...+..++.+|...|++++|.+.++++. +++|.++..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~~~~ 89 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECI----QLEPTFIKGYTR 89 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHH----HHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHH----HhCCCchHHHHH
Confidence 457888888999999999999999998851 23367889999999999999999999998665 568999999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhC
Q 006672 477 LSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 477 l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
++.+|...|++++|.+.+++..+.
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999999998874
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.19 E-value=1.2e-05 Score=79.69 Aligned_cols=96 Identities=14% Similarity=0.068 Sum_probs=78.7
Q ss_pred hhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHH
Q 006672 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVV 439 (636)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l 439 (636)
..+|..+..+|.+.|++++|+..|++.++ +.|+ ...+..+..++...|++++|...|++..+ +.| +...+..+
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l 270 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALE--LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ---LYPNNKAAKTQL 270 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHH
Confidence 46788889999999999999999999988 5565 66888888899999999999999999885 344 46788889
Q ss_pred HHHHHhcCCchHH-HHHHHHHHHH
Q 006672 440 VNLLSRVGQDSQG-YQNSQNSFTK 462 (636)
Q Consensus 440 ~~~~~~~g~~~~A-~~~~~~~~~~ 462 (636)
..++.+.|+.++| ...++++..+
T Consensus 271 ~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 271 AVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988 4566666544
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.18 E-value=2.1e-05 Score=63.10 Aligned_cols=103 Identities=14% Similarity=0.133 Sum_probs=79.4
Q ss_pred ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC--ChhHHH
Q 006672 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP--SVKHHT 437 (636)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~ 437 (636)
+...|..+...+...|++++|+..|++..+. .|+ ...+..+..++...|++++|...+++..+. .+. +...+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~ 80 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINV--IEDEYNKDVWA 80 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccchHHHHH
Confidence 4567777888888888999999999888873 343 567777888888899999999999888752 122 477888
Q ss_pred HHHHHHHhc-CCchHHHHHHHHHHHHHhccCCCCc
Q 006672 438 VVVNLLSRV-GQDSQGYQNSQNSFTKLLQLKPKHP 471 (636)
Q Consensus 438 ~l~~~~~~~-g~~~~A~~~~~~~~~~~~~l~p~~~ 471 (636)
.+..+|.+. |++++|.+.++++ ++..|.++
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~----~~~~p~~~ 111 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARA----KLEHHHHH 111 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHH----GGGCCCCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH----hhcccCCC
Confidence 888899999 9999999888744 45666543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.17 E-value=2.4e-05 Score=66.69 Aligned_cols=99 Identities=7% Similarity=-0.046 Sum_probs=87.3
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC----hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCc
Q 006672 396 DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS----VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHP 471 (636)
Q Consensus 396 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~ 471 (636)
+...+..+...+...|++++|.+.|++..+ ..|+ ...|..+...|.+.|++++|.+.++++. +++|.++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~----~~~~~~~ 99 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAI----EKDGGDV 99 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHTSCCH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHH----hhCccCH
Confidence 356788888899999999999999999985 4566 6788999999999999999999998665 5689999
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 472 SSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 472 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
..|..++.+|...|++++|...+++..+..
T Consensus 100 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 100 KALYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999998743
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.16 E-value=1.6e-05 Score=66.92 Aligned_cols=99 Identities=13% Similarity=0.025 Sum_probs=80.1
Q ss_pred CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHH
Q 006672 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438 (636)
Q Consensus 360 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 438 (636)
.+...|..+...+...|++++|+..|++... ..|+ ...+..+..++...|++++|...++...+. -+.+...+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~ 82 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFF 82 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh--hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CchhHHHHHH
Confidence 4566788888888899999999999999888 4455 567888888888999999999999988752 1335778888
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHH
Q 006672 439 VVNLLSRVGQDSQGYQNSQNSFTK 462 (636)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~~ 462 (636)
++.+|...|++++|.+.++++.+.
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999999999866643
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.15 E-value=0.0001 Score=75.75 Aligned_cols=131 Identities=10% Similarity=0.031 Sum_probs=82.4
Q ss_pred HhhHHhhcCCHHHHHHHHhhccC-----C----ChhcHHHHHHHHHHcCChHHHHHHHHHHhHc--C--CCCC-HHHHHH
Q 006672 337 LVDMYAKCGNIEAASLVFGETKE-----K----DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS--G--TEPD-GTVFLA 402 (636)
Q Consensus 337 li~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g--~~p~-~~t~~~ 402 (636)
+...+...|+.+.|..+++.... . -..++..+...|...|++++|+.+++++... + -.|. ..++..
T Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~ 180 (434)
T 4b4t_Q 101 IEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLL 180 (434)
T ss_dssp HHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 33344445666666666554432 1 1235667777788888888888888776542 1 1222 236777
Q ss_pred HHHHHHhcCcHHHHHHHHHHhHhhcC-C--CCC--hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC
Q 006672 403 ILTACWYSGQVKLALNFFDSMRFDYF-I--EPS--VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLK 467 (636)
Q Consensus 403 ll~a~~~~g~~~~a~~~~~~m~~~~~-~--~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~ 467 (636)
++..|...|++++|..++++...... + +|. ...+..++..+...|++++|...+.++.+..-...
T Consensus 181 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~ 250 (434)
T 4b4t_Q 181 ESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLT 250 (434)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Confidence 77788888888888888877653211 1 111 34567777777888888888888887766544433
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.15 E-value=3.7e-05 Score=63.83 Aligned_cols=108 Identities=15% Similarity=0.142 Sum_probs=73.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCH----HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHH
Q 006672 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG----TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVV 439 (636)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 439 (636)
+..+...+...|++++|+..|+++.+. .|+. ..+..+..++...|++++|...|+.+.+...-.+. ...+..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 344566677788888888888888773 3442 36666777788888888888888887752211111 5567777
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHH
Q 006672 440 VNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLS 478 (636)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~ 478 (636)
+.+|.+.|++++|.+.++++. +..|+++.......
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~----~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVA----TQYPGSDAARVAQE 117 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH----HHSTTSHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH----HHCCCChHHHHHHH
Confidence 888888888888888887554 44676665544443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=3.7e-05 Score=63.63 Aligned_cols=91 Identities=13% Similarity=0.057 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHH
Q 006672 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341 (636)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 341 (636)
..|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...+..+.+.. +.+...+..+...|
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 345555555555666666666665555432 2234444444445555555555555555544432 22233333333333
Q ss_pred hhcCCHHHHHHHH
Q 006672 342 AKCGNIEAASLVF 354 (636)
Q Consensus 342 ~~~g~~~~A~~~~ 354 (636)
.+.|++++|...|
T Consensus 91 ~~~~~~~~A~~~~ 103 (131)
T 2vyi_A 91 SSLNKHVEAVAYY 103 (131)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHhCCHHHHHHHH
Confidence 3333333333333
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00067 Score=66.01 Aligned_cols=180 Identities=7% Similarity=-0.043 Sum_probs=118.1
Q ss_pred cHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcC--CHHHHHHHHhhccC---CChhcHHHHHHHHHHcCC-hHHHHHHH
Q 006672 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG--NIEAASLVFGETKE---KDLLTWTAMIWGLAIHGR-YEQAIQYF 385 (636)
Q Consensus 312 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~ 385 (636)
++++..+++.++... |-+..+|+.-.-.+.+.| .++++..+++.+.+ +|..+|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 566777777777654 566777776666666666 47888888888775 566778877777777787 58888888
Q ss_pred HHHhHcCCCCCHHHHHHHHHHHHhc--------------CcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhc-----
Q 006672 386 KKMMYSGTEPDGTVFLAILTACWYS--------------GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV----- 446 (636)
Q Consensus 386 ~~m~~~g~~p~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~----- 446 (636)
.++++..+. |...|+.....+.+. +.++++++++..... --+-+...|+-+-.++.+.
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccc
Confidence 888884322 355666555554443 457888888888874 1233566676666666655
Q ss_pred ------CCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHH---HcCChhHHHHHHHHHHh
Q 006672 447 ------GQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYA---AEGRWKDVARVRTLMQR 499 (636)
Q Consensus 447 ------g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~m~~ 499 (636)
+.++++++.++ ++++++|++.=.+..++.... ..|..+++...+.++++
T Consensus 246 ~~~~~~~~l~~el~~~~----elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 246 LSVEKSTVLQSELESCK----ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CCHHHHHHHHHHHHHHH----HHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHH----HHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 34566666666 445778977433333322211 35667788888888876
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.11 E-value=8.8e-06 Score=69.49 Aligned_cols=108 Identities=10% Similarity=-0.021 Sum_probs=81.3
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-------------HHHHHHHHHHHHhcCcHHHHHHHHHHhHhh----
Q 006672 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-------------GTVFLAILTACWYSGQVKLALNFFDSMRFD---- 426 (636)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---- 426 (636)
.+......+.+.|++++|+..|++.++ +.|+ ...|..+..++...|++++|+..+++.++-
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 345566667778888888888888877 4444 127888888888899999999988888751
Q ss_pred cCCCCC-hhHH----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHH
Q 006672 427 YFIEPS-VKHH----TVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLL 477 (636)
Q Consensus 427 ~~~~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l 477 (636)
..+.|+ ...| ...+.+|...|++++|++.|+++. +++|.|...+.-+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl----el~p~d~~~~~~~ 142 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV----EMIEERKGETPGK 142 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHHHHCCSCCTTH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH----hcCCCcHHHHHHH
Confidence 012665 5677 889999999999999999998554 6788877665544
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.10 E-value=1.9e-05 Score=65.13 Aligned_cols=98 Identities=11% Similarity=0.107 Sum_probs=73.4
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHH
Q 006672 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVN 441 (636)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~ 441 (636)
.+..+...+.+.|++++|+..|++.++ ..|+ ...+..+..++...|++++|+..|++..+ +.| +...+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~~~~~la~ 93 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARM---LDPKDIAVHAALAV 93 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHH
Confidence 456667778888899999999988888 5565 56777777888888999999999888875 344 4677888888
Q ss_pred HHHhcCCchHHHHHHHHHHHHHhccCCCC
Q 006672 442 LLSRVGQDSQGYQNSQNSFTKLLQLKPKH 470 (636)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~~~~~l~p~~ 470 (636)
+|.+.|++++|.+.++++ ++++|.+
T Consensus 94 ~~~~~g~~~~A~~~~~~a----l~~~P~~ 118 (121)
T 1hxi_A 94 SHTNEHNANAALASLRAW----LLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHHH----HC-----
T ss_pred HHHHcCCHHHHHHHHHHH----HHhCcCC
Confidence 889999999998888754 4667754
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.4e-05 Score=69.67 Aligned_cols=111 Identities=8% Similarity=-0.009 Sum_probs=80.3
Q ss_pred hcHHHHHHHHHHcCChHHHHHHHHHHhHc--------CC--------CCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHh
Q 006672 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYS--------GT--------EPD-GTVFLAILTACWYSGQVKLALNFFDSMRF 425 (636)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~--------~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 425 (636)
..+......+.+.|++++|+..|++.+.. .. .|. ...|..+..+|...|++++|...++...+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34566677777788888888888777662 00 233 34677778888889999999999988875
Q ss_pred hcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCc-hhHHHHHHH
Q 006672 426 DYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHP-SSYVLLSNI 480 (636)
Q Consensus 426 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~-~~~~~l~~~ 480 (636)
+.| ++..|..++.+|...|++++|...++++. +++|.++ .....+..+
T Consensus 92 ---~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al----~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 92 ---REETNEKALFRRAKARIAAWKLDEAEEDLKLLL----RNHPAAASVVAREMKIV 141 (162)
T ss_dssp ---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCGGGHHHHHHHHHHH
T ss_pred ---cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHH----hcCCCCHHHHHHHHHHH
Confidence 234 47788888999999999999998888544 6688877 445455443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.09 E-value=5.3e-06 Score=82.44 Aligned_cols=128 Identities=11% Similarity=0.015 Sum_probs=59.5
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHH------------------HHHHHHHHHHhcCcHHHHHHHHHHhHh
Q 006672 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT------------------VFLAILTACWYSGQVKLALNFFDSMRF 425 (636)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------------------t~~~ll~a~~~~g~~~~a~~~~~~m~~ 425 (636)
.|..+...+.+.|++++|+..|++.+. ..|+.. .|..+..++.+.|++++|+..+++..+
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH--HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555566666677777777766665 344432 556666667777777777777777664
Q ss_pred hcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHH-HcCChhHHHHHHHHHHhC
Q 006672 426 DYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYA-AEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 426 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~ 500 (636)
+.| +...|..+..+|...|++++|.+.|++ +++++|.++.++..|..+.. ..+..+++...+++|...
T Consensus 259 ---~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~----al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 259 ---EEEKNPKALFRRGKAKAELGQMDSARDDFRK----AQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp ---HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH----TTC------------------------------------
T ss_pred ---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH----HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 223 456677777777777777777777663 34667777777777666633 345566666666666543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.09 E-value=2.1e-05 Score=65.25 Aligned_cols=113 Identities=9% Similarity=-0.016 Sum_probs=78.9
Q ss_pred hcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCC-CCC----hhHH
Q 006672 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI-EPS----VKHH 436 (636)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p~----~~~~ 436 (636)
..|..+...+...|++++|+..|++..+. .| +...+..+...+...|++++|...+++......- .++ ...+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 45666777788888888888888888773 34 3556777777788888888888888877642211 122 6677
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 006672 437 TVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYA 482 (636)
Q Consensus 437 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~ 482 (636)
..++.+|.+.|++++|.+.++++. ++.| ++..+..+..+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~----~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSL----AEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH----HHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHH----HhCC-CHHHHHHHHHHHH
Confidence 788888888888888888887655 3456 5666666555444
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00038 Score=67.78 Aligned_cols=193 Identities=9% Similarity=0.009 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCC-HHHHHHHH
Q 006672 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVG--ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN-IEAASLVF 354 (636)
Q Consensus 278 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~ 354 (636)
++++.++..+.... +-+..+|..-...+...+ .++.+..+++.+.+.. +.+...|+.-.-++.+.|. ++++.+.+
T Consensus 91 ~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 91 KAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 44444444444432 223333333333333333 2445555555554433 3344444444444444444 34555555
Q ss_pred hhccC---CChhcHHHHHHHHHHc--------------CChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhc------
Q 006672 355 GETKE---KDLLTWTAMIWGLAIH--------------GRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYS------ 410 (636)
Q Consensus 355 ~~~~~---~~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~------ 410 (636)
+.+.+ .|..+|+.....+... +.++++++.+.+... ..|+ ...|+.+-..+.+.
T Consensus 169 ~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCcccc
Confidence 54443 3444555544444333 346777788877777 5555 44555444333333
Q ss_pred -----CcHHHHHHHHHHhHhhcCCCCChhHHHH--HHH---HHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 006672 411 -----GQVKLALNFFDSMRFDYFIEPSVKHHTV--VVN---LLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNI 480 (636)
Q Consensus 411 -----g~~~~a~~~~~~m~~~~~~~p~~~~~~~--l~~---~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~ 480 (636)
+.++++++.++++.+ +.|+. .|.. ++. .....|..+++...+. ++.+++|...+-|.-|...
T Consensus 247 ~~~~~~~l~~el~~~~elle---~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~----~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQE---LEPEN-KWCLLTIILLMRALDPLLYEKETLQYFS----TLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHH---HCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHH----HHHHHCGGGHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHh---hCccc-chHHHHHHHHHHhhcccccHHHHHHHHH----HHHHhCcchhhHHHHHHHH
Confidence 457888888888875 45664 2322 221 1223455556555554 6678899888888777655
Q ss_pred HH
Q 006672 481 YA 482 (636)
Q Consensus 481 ~~ 482 (636)
+.
T Consensus 319 ~~ 320 (331)
T 3dss_A 319 FL 320 (331)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.05 E-value=3.9e-05 Score=63.66 Aligned_cols=95 Identities=12% Similarity=0.018 Sum_probs=79.7
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCCh---hHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCC---chhH
Q 006672 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSV---KHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH---PSSY 474 (636)
Q Consensus 401 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~---~~~~ 474 (636)
..+...+...|++++|...|+.+.+... .+. ..+..++.+|.+.|++++|.+.++++. +..|++ +.++
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~----~~~p~~~~~~~~~ 79 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYP--NGVYTPNALYWLGESYYATRNFQLAEAQFRDLV----SRYPTHDKAAGGL 79 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCS--SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTSTTHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCC--CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH----HHCCCCcccHHHH
Confidence 3455677889999999999999986322 223 578889999999999999999998665 568888 7789
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 475 VLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 475 ~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
..++.+|...|++++|...++++.+..
T Consensus 80 ~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 80 LKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999999999999998743
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.03 E-value=6.1e-06 Score=67.62 Aligned_cols=63 Identities=11% Similarity=0.107 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 433 VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
...+..++.+|.+.|++++|.+.++++. +++|+++.++..++.+|...|++++|...+++..+
T Consensus 27 ~~~~~~lg~~~~~~~~~~~A~~~~~~al----~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 27 AECYLGLGSTFRTLGEYRKAEAVLANGV----KQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344445555555555555555554332 33555555555555555555555555555555444
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.03 E-value=3.6e-05 Score=66.45 Aligned_cols=130 Identities=12% Similarity=0.068 Sum_probs=86.6
Q ss_pred HHHHHhhHHhhcCCHHHHHHHHhhccC-----CC----hhcHHHHHHHHHHcCChHHHHHHHHHHhHcC----CCCC-HH
Q 006672 333 IGTALVDMYAKCGNIEAASLVFGETKE-----KD----LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG----TEPD-GT 398 (636)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~-~~ 398 (636)
++..+...|...|++++|...+++..+ ++ ..++..+...|...|++++|+..+++..+.. -.+. ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 445555566666666666666655443 11 1366777777888888888888888776521 1111 33
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhHhhc---CCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 006672 399 VFLAILTACWYSGQVKLALNFFDSMRFDY---FIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK 462 (636)
Q Consensus 399 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 462 (636)
.+..+...+...|++++|.+.+++..+.. +..+ ....+..+...|...|++++|.+.++++.+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 56667778888899999998888776421 1111 1456778888999999999999999877654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.01 E-value=3.5e-05 Score=67.18 Aligned_cols=99 Identities=7% Similarity=0.028 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcC------C---------CC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 006672 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYF------I---------EP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFT 461 (636)
Q Consensus 398 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~------~---------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 461 (636)
..+......+...|++++|...|+....... - .| ....|..+..+|.+.|++++|+..++++.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al- 90 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL- 90 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-
Confidence 4566777888999999999999999875200 0 12 24688999999999999999999998654
Q ss_pred HHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 462 KLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 462 ~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
+++|.++.+|..++.+|...|++++|...+++..+.
T Consensus 91 ---~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 ---KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp ---HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 679999999999999999999999999999999874
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=1e-05 Score=73.44 Aligned_cols=161 Identities=12% Similarity=0.002 Sum_probs=80.1
Q ss_pred HHhcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCcHHH
Q 006672 240 FMRKGDLKKAGELFEQMPEK---GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV-RANDFTVVSALSACAKVGALEAG 315 (636)
Q Consensus 240 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~a 315 (636)
....|++++|.+.++..... ....|..+...+...|++++|+..|++..+... .|+.... .+ +.-
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~--~~---------~~~ 82 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ--IL---------LDK 82 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH--HH---------HHH
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh--hH---------HHH
Confidence 33445555555555433221 244677777888888888888888888876421 1100000 00 000
Q ss_pred HHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcC
Q 006672 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392 (636)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 392 (636)
.. .....++..+..+|.+.|++++|...+++..+ .+...|..+..+|...|++++|+..|++..+
T Consensus 83 ---~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-- 150 (198)
T 2fbn_A 83 ---KK-------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS-- 150 (198)
T ss_dssp ---HH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--
T ss_pred ---HH-------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH--
Confidence 00 00123445555566666666666666655443 3455666667777777777777777777766
Q ss_pred CCCC-HHHHHHHHHHHHhcCcHHHHH-HHHHHh
Q 006672 393 TEPD-GTVFLAILTACWYSGQVKLAL-NFFDSM 423 (636)
Q Consensus 393 ~~p~-~~t~~~ll~a~~~~g~~~~a~-~~~~~m 423 (636)
+.|+ ...+..+..++...++.+++. ..+..+
T Consensus 151 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 151 LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4454 345555555666666665555 344444
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.00 E-value=2.2e-05 Score=65.06 Aligned_cols=108 Identities=14% Similarity=0.111 Sum_probs=64.0
Q ss_pred hHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCC--CCC----HHHHHH
Q 006672 332 AIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT--EPD----GTVFLA 402 (636)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~t~~~ 402 (636)
..+..+...+...|++++|...|++... .+...|..+...|...|++++|+..++++.+... .++ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 3445555556666666666666655443 3445566666667777777777777777665311 111 445666
Q ss_pred HHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHH
Q 006672 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442 (636)
Q Consensus 403 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 442 (636)
+..++...|++++|.+.|+.+.+ ..|+......+..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~l~~~ 121 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA---EHRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---HCCCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH---hCCCHHHHHHHHHH
Confidence 66677777777777777777764 23455544444443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.99 E-value=4e-05 Score=76.99 Aligned_cols=123 Identities=13% Similarity=0.053 Sum_probs=99.2
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHhHc--------------CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcC
Q 006672 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYS--------------GTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428 (636)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--------------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 428 (636)
.|..+...+.+.|++++|+..|++.++. ...|. ...|..+..+|.+.|++++|+..+++..+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--- 301 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE--- 301 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH---
Confidence 4666777777888888888888777651 02333 45788888899999999999999999985
Q ss_pred CCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHH
Q 006672 429 IEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARV 493 (636)
Q Consensus 429 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~ 493 (636)
+.| +...|..+..+|.+.|++++|.+.++++. +++|.+...+..+..++...++.+++.+.
T Consensus 302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al----~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQ----EIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 57889999999999999999999998655 67999999999999999998888877543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00057 Score=66.84 Aligned_cols=85 Identities=13% Similarity=0.049 Sum_probs=51.3
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC-ChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhc-C-ChHH
Q 006672 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLG-KTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI-G-YLRK 217 (636)
Q Consensus 141 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g-~~~~ 217 (636)
.....++|.++.+.++..+ +.+..+|+.--..+...| .+++++++++.+.... +.+..+|+.-...+.+. + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 3344556777777777664 334555666666666666 4777777777766555 55666666655555554 4 5556
Q ss_pred HHHHHhhCCC
Q 006672 218 AVELFGMMPK 227 (636)
Q Consensus 218 A~~~~~~m~~ 227 (636)
++++++++..
T Consensus 144 EL~~~~k~L~ 153 (349)
T 3q7a_A 144 EIEYIHGSLL 153 (349)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHHHH
Confidence 6666555553
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00021 Score=75.89 Aligned_cols=168 Identities=11% Similarity=0.057 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCC----------HHHHHHHHhhccC---CChhcHHHHHHHHHHcC--C
Q 006672 313 EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN----------IEAASLVFGETKE---KDLLTWTAMIWGLAIHG--R 377 (636)
Q Consensus 313 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g--~ 377 (636)
++|.+.++.+++.. |-+..+|+.--..+.+.|+ ++++.+.++.+.+ ++..+|+.-.-.+.+.| +
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 44455555555543 3344445444444444444 6777777777664 46667777777777778 6
Q ss_pred hHHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcC-cHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhc---------
Q 006672 378 YEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSG-QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV--------- 446 (636)
Q Consensus 378 ~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g-~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~--------- 446 (636)
++++++.++++.+. .| |...|+.-..++.+.| .++++.++++++++ .-+-+...|+....++.+.
T Consensus 125 ~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~--~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 125 WARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--TTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred HHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHH--HCCCCccHHHHHHHHHHhhccccccccc
Confidence 68888888888884 44 3567777777777778 78888888888874 1233567777777776663
Q ss_pred -----CCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhH
Q 006672 447 -----GQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKD 489 (636)
Q Consensus 447 -----g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~ 489 (636)
+.+++|.+.++++ ++++|.|..+|.-+..++.+.|+.++
T Consensus 201 ~~~~~~~~~eel~~~~~a----i~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNA----FFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHH----HHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHH----HhhCCCCccHHHHHHHHHhcCCCccc
Confidence 4567888877754 47799999999999999999988665
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.91 E-value=1.6e-05 Score=65.01 Aligned_cols=96 Identities=16% Similarity=0.166 Sum_probs=71.1
Q ss_pred HcCChHHHHHHHHHHhHcCC-CCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchH
Q 006672 374 IHGRYEQAIQYFKKMMYSGT-EPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQ 451 (636)
Q Consensus 374 ~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 451 (636)
..|++++|+..|++.++.+. .|+ ...+..+..++...|++++|...|++..+. .+-+...+..++.+|.+.|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHH
Confidence 35788899999999988421 244 457888888999999999999999998852 23347788889999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCchhHH
Q 006672 452 GYQNSQNSFTKLLQLKPKHPSSYV 475 (636)
Q Consensus 452 A~~~~~~~~~~~~~l~p~~~~~~~ 475 (636)
|.+.++++. +..|.++....
T Consensus 80 A~~~~~~al----~~~p~~~~~~~ 99 (117)
T 3k9i_A 80 GVELLLKII----AETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHH----HHHCCCHHHHH
T ss_pred HHHHHHHHH----HhCCCcHHHHH
Confidence 999998665 45777765443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.88 E-value=4.8e-05 Score=78.91 Aligned_cols=131 Identities=11% Similarity=0.019 Sum_probs=99.1
Q ss_pred HHHHcCChHHHHHHHHHHhHc---CCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHhHhh----cCC-CCC-hhHHH
Q 006672 371 GLAIHGRYEQAIQYFKKMMYS---GTEPD----GTVFLAILTACWYSGQVKLALNFFDSMRFD----YFI-EPS-VKHHT 437 (636)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~---g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----~~~-~p~-~~~~~ 437 (636)
.+..+|++++|+.++++.++. -+.|+ ..+++.|..+|...|++++|..++++..+- +|- .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355678888888888887652 12233 247888888999999999999988877532 221 232 56789
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHhc-cCCCCch---hHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 438 VVVNLLSRVGQDSQGYQNSQNSFTKLLQ-LKPKHPS---SYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 438 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-l~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
.|+.+|...|++++|+.+++++.+-... +.|+++. ....|..++...|++++|..++.++++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988765443 4566654 45678888999999999999999998754
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.84 E-value=7.6e-05 Score=77.46 Aligned_cols=100 Identities=11% Similarity=0.087 Sum_probs=74.7
Q ss_pred hhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHH
Q 006672 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVV 439 (636)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l 439 (636)
...|..+..+|.+.|++++|+..|++.++ +.|+ ...+..+..+|...|++++|...|+++.+ +.| +...+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l 391 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALG--LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE---VNPQNKAARLQI 391 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TC----CHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 46788889999999999999999999988 5565 56888888899999999999999999875 445 46788888
Q ss_pred HHHHHhcCCchHHHH-HHHHHHHHHhcc
Q 006672 440 VNLLSRVGQDSQGYQ-NSQNSFTKLLQL 466 (636)
Q Consensus 440 ~~~~~~~g~~~~A~~-~~~~~~~~~~~l 466 (636)
..++.+.|+.++|.. ++.++..+..+.
T Consensus 392 ~~~~~~~~~~~~a~~~~~~~~f~k~~~~ 419 (457)
T 1kt0_A 392 SMCQKKAKEHNERDRRIYANMFKKFAEQ 419 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 899999888887764 455555554443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00028 Score=71.98 Aligned_cols=123 Identities=11% Similarity=0.093 Sum_probs=90.2
Q ss_pred HHHHHhcCcHHHHHHHHHHhHhhcC--CCCC----hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc-CCCCc---hh
Q 006672 404 LTACWYSGQVKLALNFFDSMRFDYF--IEPS----VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQL-KPKHP---SS 473 (636)
Q Consensus 404 l~a~~~~g~~~~a~~~~~~m~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l-~p~~~---~~ 473 (636)
+..+...|++++|..++++..+... +.|+ ..+++.++.+|...|++++|+.+++++.+-..+. .|.++ .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 3445567788888888887764221 2222 5678888899999999999999999777554443 33333 57
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCeeeEEEECCEEEEecCCC-cccHHHHHHHHHHHHHHHH
Q 006672 474 YVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG-HKLAKEIHSKLEDIMAGAR 543 (636)
Q Consensus 474 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~i~~~~~~~~~~~~~-~~~~~~i~~~l~~l~~~~~ 543 (636)
++.|+.+|...|++++|..++++..+.-. -..|. ||...+++..+.+....|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~-----------------~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR-----------------VTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------------HHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH-----------------HhcCCCChHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999999876211 12343 9999999998888777665
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00027 Score=59.59 Aligned_cols=113 Identities=12% Similarity=0.006 Sum_probs=94.3
Q ss_pred cCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh----cCCch
Q 006672 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR----VGQDS 450 (636)
Q Consensus 375 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 450 (636)
.+++++|++.|++..+.| .|+.. +...|...+.+++|.++|++..+ . -++..+..|..+|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~-~---g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACE-L---NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHc-C---CCHHHHHHHHHHHHcCCCCCccHH
Confidence 356789999999999876 33333 66677777889999999999885 3 467888889999988 89999
Q ss_pred HHHHHHHHHHHHHhccCCCCchhHHHHHHHHHH----cCChhHHHHHHHHHHhCCC
Q 006672 451 QGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAA----EGRWKDVARVRTLMQRRSI 502 (636)
Q Consensus 451 ~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~ 502 (636)
+|.+.++++.+. .++.++..|+.+|.. .+++++|.+++++..+.|.
T Consensus 79 ~A~~~~~~Aa~~------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGL------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcC------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999988754 478899999999999 8999999999999999874
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00014 Score=57.36 Aligned_cols=65 Identities=11% Similarity=0.051 Sum_probs=56.1
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 432 SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
++..+..++.+|.+.|++++|++.|+++. +++|.++.+|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al----~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELV----ETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46778888999999999999999888554 568999999999999999999999999999988763
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00013 Score=58.43 Aligned_cols=94 Identities=13% Similarity=0.000 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCC-----
Q 006672 396 DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH----- 470 (636)
Q Consensus 396 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~----- 470 (636)
+...+..+...+...|++++|...|++..+. .+.+...|..++.+|.+.|++++|.+.++++ ++++|++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a----l~~~p~~~~~~~ 76 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQG----LRYTSTAEHVAI 76 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH----HTSCSSTTSHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH----HHhCCCccHHHH
Confidence 3455666777777888888888888877752 2235677788888888888888888888744 4678877
Q ss_pred -chhHHHHHHHHHHcCChhHHHHHHH
Q 006672 471 -PSSYVLLSNIYAAEGRWKDVARVRT 495 (636)
Q Consensus 471 -~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (636)
...+..++.++...|++++|...++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 77 RSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 6677778888887777776655443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.64 E-value=5.8e-05 Score=64.27 Aligned_cols=86 Identities=10% Similarity=0.031 Sum_probs=63.6
Q ss_pred hcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCc----------hHHHHHHHHHHHHHhccCCCCchhHHHH
Q 006672 409 YSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQD----------SQGYQNSQNSFTKLLQLKPKHPSSYVLL 477 (636)
Q Consensus 409 ~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~l~p~~~~~~~~l 477 (636)
+.+.+++|.+.++...+ +.| ++..|..+..++...|++ ++|+..|++ +++++|++..+|..+
T Consensus 14 r~~~feeA~~~~~~Ai~---l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~----AL~ldP~~~~A~~~L 86 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYK---SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEE----ALLIDPKKDEAVWCI 86 (158)
T ss_dssp HHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH----HHHHCTTCHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHH----HHHhCcCcHHHHHHH
Confidence 34556666666666654 233 466666666666666554 477777774 457899999999999
Q ss_pred HHHHHHcC-----------ChhHHHHHHHHHHhCC
Q 006672 478 SNIYAAEG-----------RWKDVARVRTLMQRRS 501 (636)
Q Consensus 478 ~~~~~~~g-----------~~~~A~~~~~~m~~~g 501 (636)
+++|...| ++++|++.|++..+..
T Consensus 87 G~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 87 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 99999875 8999999999999843
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00033 Score=56.71 Aligned_cols=80 Identities=6% Similarity=0.007 Sum_probs=60.3
Q ss_pred HHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHH
Q 006672 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVR 494 (636)
Q Consensus 415 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 494 (636)
+|...|++..+ .-+.+...+..++..|.+.|++++|.+.++++. +++|.++..|..++.+|...|++++|...+
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al----~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAAL----DFDPTYSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH----HHCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35566666653 122346777888888888888888888887554 567888888888888888888888888888
Q ss_pred HHHHhC
Q 006672 495 TLMQRR 500 (636)
Q Consensus 495 ~~m~~~ 500 (636)
++..+.
T Consensus 77 ~~al~~ 82 (115)
T 2kat_A 77 ESGLAA 82 (115)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887763
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00037 Score=53.32 Aligned_cols=83 Identities=13% Similarity=0.181 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHH
Q 006672 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVL 476 (636)
Q Consensus 397 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~ 476 (636)
...+..+...+...|++++|...|++..+. .+.+...+..+..+|.+.|++++|.+.++++. +++|.++..+..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~----~~~p~~~~~~~~ 82 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL----ELDPNNAEAKQN 82 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH----hcCCCCHHHHHH
Confidence 345666777778888888888888887752 12356778888888888999999988888554 568888888888
Q ss_pred HHHHHHHcC
Q 006672 477 LSNIYAAEG 485 (636)
Q Consensus 477 l~~~~~~~g 485 (636)
++.++...|
T Consensus 83 l~~~~~~~g 91 (91)
T 1na3_A 83 LGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcC
Confidence 888877654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00026 Score=70.10 Aligned_cols=142 Identities=12% Similarity=0.020 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHH
Q 006672 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341 (636)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 341 (636)
..|..+...+.+.|++++|+..|++.... .|+...+ ...++.+++...+ ....+..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-------~~~~~~~~~~~~l----------~~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMF-------QLYGKYQDMALAV----------KNPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHH-------TCCHHHHHHHHHH----------HTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhh-------hhcccHHHHHHHH----------HHHHHHHHHHHH
Confidence 44666777778888888888888887763 3433211 1112222221111 112455666666
Q ss_pred hhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHH-HHHHHHHH-HHhcCcHHHH
Q 006672 342 AKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTA-CWYSGQVKLA 416 (636)
Q Consensus 342 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a-~~~~g~~~~a 416 (636)
.+.|++++|...|++..+ .+...|..+..+|...|++++|+..|++..+ +.|+.. .+..+... ....+..+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777666666543 3455666677777777777777777777665 445433 33333322 2234555666
Q ss_pred HHHHHHhH
Q 006672 417 LNFFDSMR 424 (636)
Q Consensus 417 ~~~~~~m~ 424 (636)
...|..|.
T Consensus 319 ~~~~~~~l 326 (338)
T 2if4_A 319 KEMYKGIF 326 (338)
T ss_dssp --------
T ss_pred HHHHHHhh
Confidence 66666665
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00048 Score=71.39 Aligned_cols=106 Identities=12% Similarity=0.070 Sum_probs=72.7
Q ss_pred hcHHHHHHHHHHcCChHHHHHHHHHHhHc-----C-CCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhh----cCC-C
Q 006672 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYS-----G-TEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFD----YFI-E 430 (636)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----~~~-~ 430 (636)
.+++.|...|...|++++|+.++++.++- | -.|+ ..+++.|...|...|++++|..++++..+. .|. .
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H 431 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 36677777777777777777777776541 1 1233 347788888888888888888888876531 232 1
Q ss_pred CC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCC
Q 006672 431 PS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKP 468 (636)
Q Consensus 431 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p 468 (636)
|+ ....+.+..++...|++++|+.++.++.+..++-.|
T Consensus 432 p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~ 470 (490)
T 3n71_A 432 PITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQP 470 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 22 455677778888899999999999988877655444
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00046 Score=53.39 Aligned_cols=70 Identities=13% Similarity=0.105 Sum_probs=60.1
Q ss_pred CCChhHHHHHHHHHHhcCC---chHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCc
Q 006672 430 EPSVKHHTVVVNLLSRVGQ---DSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIK 503 (636)
Q Consensus 430 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 503 (636)
++++..+..+..++...++ .++|..+++++ ++++|+++.++..++..+.+.|++++|+..|+++.+....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~A----L~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQA----LQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHH----HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH----HHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4568888888888875555 79999998855 4789999999999999999999999999999999987644
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00029 Score=71.83 Aligned_cols=111 Identities=11% Similarity=0.026 Sum_probs=79.2
Q ss_pred hcCcHHHHHHHHHHhHhhc--CCCCC----hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc-CCCC---chhHHHHH
Q 006672 409 YSGQVKLALNFFDSMRFDY--FIEPS----VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQL-KPKH---PSSYVLLS 478 (636)
Q Consensus 409 ~~g~~~~a~~~~~~m~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l-~p~~---~~~~~~l~ 478 (636)
..|++++|..++++..+.. -+.|+ ..+++.|+.+|...|++++|+.+++++.+-..+. .|++ ..+|+.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3567788887777665321 12222 4678889999999999999999999776554443 3433 35788999
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCccCCeeeEEEECCEEEEecCCC-cccHHHHHHHHH
Q 006672 479 NIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG-HKLAKEIHSKLE 536 (636)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~i~~~~~~~~~~~~~-~~~~~~i~~~l~ 536 (636)
.+|...|++++|..++++..+.-. -..|. ||...++...++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~-----------------~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIME-----------------VAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH-----------------HHTCTTCHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHH-----------------HHcCCCChHHHHHHHHHh
Confidence 999999999999999999876211 12343 998888776554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00042 Score=69.51 Aligned_cols=89 Identities=8% Similarity=0.014 Sum_probs=68.8
Q ss_pred ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHH
Q 006672 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTV 438 (636)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 438 (636)
+...|..+..+|.+.|++++|+..+++.++ +.|+ ...+..+..+|...|++++|...|++..+ +.| +...+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~---l~P~~~~~~~~ 346 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALE--IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE---IAPEDKAIQAE 346 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 456788888888899999999999999888 5565 56778888888899999999999988875 334 4666777
Q ss_pred HHHHHHhcCCchHHHH
Q 006672 439 VVNLLSRVGQDSQGYQ 454 (636)
Q Consensus 439 l~~~~~~~g~~~~A~~ 454 (636)
+..++.+.++.+++.+
T Consensus 347 l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 347 LLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777776666543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00013 Score=62.11 Aligned_cols=95 Identities=14% Similarity=0.033 Sum_probs=66.0
Q ss_pred HHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCc----------HHHHHHHHHHhHhhcCCCCC-hhHHHHHH
Q 006672 373 AIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQ----------VKLALNFFDSMRFDYFIEPS-VKHHTVVV 440 (636)
Q Consensus 373 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~~~p~-~~~~~~l~ 440 (636)
.+.+++++|++.+++..+ ..|+ ...|..+..++...++ +++|+..|++.++ +.|+ ...|.+++
T Consensus 13 ~r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~---ldP~~~~A~~~LG 87 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH---hCcCcHHHHHHHH
Confidence 344567777777777777 4554 4566666666666554 4588888888875 5564 67888888
Q ss_pred HHHHhcC-----------CchHHHHHHHHHHHHHhccCCCCchhHHH
Q 006672 441 NLLSRVG-----------QDSQGYQNSQNSFTKLLQLKPKHPSSYVL 476 (636)
Q Consensus 441 ~~~~~~g-----------~~~~A~~~~~~~~~~~~~l~p~~~~~~~~ 476 (636)
.+|...| ++++|.+.|+++. +++|++......
T Consensus 88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl----~l~P~~~~y~~a 130 (158)
T 1zu2_A 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAV----DEQPDNTHYLKS 130 (158)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH----HHCTTCHHHHHH
T ss_pred HHHHHhcccCcchhhhhccHHHHHHHHHHHH----HhCCCCHHHHHH
Confidence 8888764 8999999888554 779987644443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00071 Score=53.96 Aligned_cols=91 Identities=12% Similarity=0.071 Sum_probs=66.8
Q ss_pred hhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-------h
Q 006672 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-------V 433 (636)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-------~ 433 (636)
...|..+...+...|++++|+..|++..+ ..|+ ...+..+..++...|++++|...+++..+ +.|+ .
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~ 78 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLIT--AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR---YTSTAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCSSTTSHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCccHHHHHH
Confidence 45677777888888888888888888887 4454 56777788888888888888888888874 3454 4
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHH
Q 006672 434 KHHTVVVNLLSRVGQDSQGYQNSQ 457 (636)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~ 457 (636)
..+..+..++...|+.++|.+.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHHhHhhhHhHHH
Confidence 556666777777777776655443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0094 Score=63.21 Aligned_cols=170 Identities=9% Similarity=-0.018 Sum_probs=121.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------cHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhc
Q 006672 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA----------LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344 (636)
Q Consensus 275 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 344 (636)
...++|++.++++...+ +-+...|+.--.++...++ ++++.+.++.+.+.. +-+..+|..-.-.+.+.
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 34467777777777653 2233444444444444455 778888888887765 56677777777777777
Q ss_pred C--CHHHHHHHHhhccC---CChhcHHHHHHHHHHcC-ChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhc-------
Q 006672 345 G--NIEAASLVFGETKE---KDLLTWTAMIWGLAIHG-RYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYS------- 410 (636)
Q Consensus 345 g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~------- 410 (636)
| +++++.+.++++.+ +|..+|+.-...+...| .++++++.++++++ ..|+ ...|+.....+...
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~--~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--TTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHH--HCCCCccHHHHHHHHHHhhccccccc
Confidence 7 67888888888775 56778888888888888 78889999888887 4454 55676666655542
Q ss_pred -------CcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchH
Q 006672 411 -------GQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQ 451 (636)
Q Consensus 411 -------g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 451 (636)
+.++++.++++.... +.| +...|..+..++.+.|+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~---~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHH---HCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHh---hCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999988875 334 57888889999988888655
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0099 Score=58.08 Aligned_cols=135 Identities=13% Similarity=0.080 Sum_probs=88.0
Q ss_pred CChhcHHHHHHHHH--HcC---ChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHh---cC-----cHHHHHHHHHHhHh
Q 006672 360 KDLLTWTAMIWGLA--IHG---RYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWY---SG-----QVKLALNFFDSMRF 425 (636)
Q Consensus 360 ~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~---~g-----~~~~a~~~~~~m~~ 425 (636)
.+...|...+.+.. ..+ ...+|+.+|++.++ ..|+ ...+..+..+|.. .+ ........++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 46667777666543 222 34788889999888 6777 3444444433321 11 11111122222211
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 426 DYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 426 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
....+.++..|..+.-.+...|++++|...++++. +++| +...|..++.++.-.|++++|.+.+++....+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl----~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGI----DLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH----HHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHH----hcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 12235567788888777777899999999988665 5566 57788899999999999999999999988754
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0013 Score=51.69 Aligned_cols=61 Identities=15% Similarity=0.138 Sum_probs=32.1
Q ss_pred hhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhH
Q 006672 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMR 424 (636)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 424 (636)
...|..+...|...|++++|+..|++..+ ..|+ ...|..+..+|...|++++|.+.|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555555555555555555555555 3333 3345555555555555555555555544
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0073 Score=50.58 Aligned_cols=107 Identities=11% Similarity=0.038 Sum_probs=45.9
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhh----cCCHHHHH
Q 006672 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK----CGNIEAAS 351 (636)
Q Consensus 276 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 351 (636)
++++|+.+|++..+.| .|+.. +...|...+..++|.+.+....+.| ++.....|..+|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3455555555555554 22222 3333333344444555555444432 23333444444443 34444444
Q ss_pred HHHhhccC-CChhcHHHHHHHHHH----cCChHHHHHHHHHHhH
Q 006672 352 LVFGETKE-KDLLTWTAMIWGLAI----HGRYEQAIQYFKKMMY 390 (636)
Q Consensus 352 ~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 390 (636)
+.|++..+ .+..++..|...|.. .++.++|+..|++..+
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 44444332 233344444444444 3444444444444444
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0018 Score=52.13 Aligned_cols=57 Identities=11% Similarity=-0.088 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHH
Q 006672 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQ 457 (636)
Q Consensus 399 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (636)
.+..+..++...|++++|...|++..+. -+.+...|..++.+|.+.|++++|...++
T Consensus 21 ~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 21 LRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3333444444444444444444444321 01123344444444444444444444444
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.01 E-value=2.4e-06 Score=84.58 Aligned_cols=369 Identities=11% Similarity=0.129 Sum_probs=197.4
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 006672 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLAD 172 (636)
Q Consensus 93 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 172 (636)
.+..|..|..+....++..+|++.|-+. -|...|..++.++.+.|.+++-...+....+. ..++.+=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 3456889999999999999988766432 26677888999999999999888887766654 345556678999
Q ss_pred HHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 006672 173 MYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGEL 252 (636)
Q Consensus 173 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~ 252 (636)
+|++.+++.+-.+++. .||+.-...+.+-|...|.++.|.-+|..+. -|.-|...+.+.|++..|.+.
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~is-----N~akLAstLV~L~~yq~AVda 192 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDG 192 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC-----CCTTTSSSSSSCSGGGSSTTT
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCc-----cHHHHHHHHHHHHHHHHHHHH
Confidence 9999999776544332 6777788888888999999998888887765 122233333444444443322
Q ss_pred HhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchh
Q 006672 253 FEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332 (636)
Q Consensus 253 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 332 (636)
-++ ..++.||-.+-.+|...+.+.-|.-.--.+. +.|| -...++..|...|.+++-+.+++.-+... .....
T Consensus 193 ArK--Ans~ktWKeV~~ACvd~~EfrLAqicGLniI---vhad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmG 264 (624)
T 3lvg_A 193 ARK--ANSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMG 264 (624)
T ss_dssp TTT--CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHH
T ss_pred HHh--cCChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHH
Confidence 111 1234555555555665555554433322222 1111 11223344455555555555555444221 23455
Q ss_pred HHHHHhhHHhhcCCHHHHHHHHh----hccC-------CChhcHHHHHHHHHHcCChHHHHHH-------------HHHH
Q 006672 333 IGTALVDMYAKCGNIEAASLVFG----ETKE-------KDLLTWTAMIWGLAIHGRYEQAIQY-------------FKKM 388 (636)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~----~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~-------------~~~m 388 (636)
+++-|.-.|+|-. .+.-.+-++ ++-- .....|.-++-.|.+-.+++.|... |.+.
T Consensus 265 mFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdi 343 (624)
T 3lvg_A 265 MFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDI 343 (624)
T ss_dssp HHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTT
T ss_pred HHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHH
Confidence 5555555555432 222222111 1111 1334566666666655555544321 1111
Q ss_pred hHc---------------CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhh-----c--CC--CCChhHHHHHHHHHH
Q 006672 389 MYS---------------GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD-----Y--FI--EPSVKHHTVVVNLLS 444 (636)
Q Consensus 389 ~~~---------------g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-----~--~~--~p~~~~~~~l~~~~~ 444 (636)
... ...| ...+-|+.++...=+...+.++|++.-.- + .+ .-+..+-.++-++|.
T Consensus 344 i~KVaN~EiyYKAi~FYL~e~P--~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~I 421 (624)
T 3lvg_A 344 ITKVANVELYYRAIQFYLEFKP--LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFI 421 (624)
T ss_dssp GGGCSCSHHHHHHHHHHTTSCC--TTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHH
T ss_pred HHHcchHHHHHHHHHHHHHhCh--HHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 100 0111 12334444444444444555555432100 0 00 112334456667777
Q ss_pred hcCCchHHHHHHH--------HHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHH
Q 006672 445 RVGQDSQGYQNSQ--------NSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVR 494 (636)
Q Consensus 445 ~~g~~~~A~~~~~--------~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 494 (636)
...+++.-...++ ..++++ +..+ -...--.-+.+|.++++|+++..+.
T Consensus 422 EEEDy~~LR~SId~ydNFD~i~LA~rL-EkHe-L~eFRrIAA~LYkkn~rw~qsi~l~ 477 (624)
T 3lvg_A 422 TEEDYQALRTSIDAYDNFDNISLAQRL-EKHE-LIEFRRIAAYLFKGNNRWKQSVELC 477 (624)
T ss_dssp HTTCCHHHHHTTSSCCCSCTTHHHHHH-HTCS-SHHHHHHHHHHHHTTCHHHHHSSCS
T ss_pred hhhhHHHHHHHHHHhccccHHHHHHHH-hhCc-hHHHHHHHHHHHHhcccHHHHHHHH
Confidence 7777765544443 222221 2111 2233334566788888888887664
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.022 Score=63.51 Aligned_cols=154 Identities=14% Similarity=0.102 Sum_probs=100.2
Q ss_pred HHHHhcCChHHHHH-HHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHH
Q 006672 172 DMYVQLGKTRGAFK-VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAG 250 (636)
Q Consensus 172 ~~~~~~g~~~~A~~-~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 250 (636)
......+++++|.+ ++..++ +......++..+.+.|.+++|+++.+. . ..-.......|++++|.
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPD-----Q---DQKFELALKVGQLTLAR 672 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHH
T ss_pred hHHHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCC-----c---chheehhhhcCCHHHHH
Confidence 34456788888888 554432 122337777888888999998887642 2 12234567789999999
Q ss_pred HHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCc
Q 006672 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330 (636)
Q Consensus 251 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 330 (636)
++.+.+. +...|..+...+.+.|+++.|.+.|.++.+ |..+...+...++.+...++-+.....|.
T Consensus 673 ~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~--- 738 (814)
T 3mkq_A 673 DLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK--- 738 (814)
T ss_dssp HHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC---
T ss_pred HHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc---
Confidence 9988774 457899999999999999999999987753 23344445556666655555444444331
Q ss_pred hhHHHHHhhHHhhcCCHHHHHHHHhh
Q 006672 331 GAIGTALVDMYAKCGNIEAASLVFGE 356 (636)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~ 356 (636)
++.-...|.++|++++|.+++.+
T Consensus 739 ---~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 739 ---FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp ---HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ---hHHHHHHHHHcCCHHHHHHHHHH
Confidence 12333445556666666665433
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0082 Score=61.15 Aligned_cols=108 Identities=19% Similarity=0.111 Sum_probs=79.4
Q ss_pred HHHHHHcCChHHHHHHHHHHhHc---CCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHhHhh----cC-CCCC-hhH
Q 006672 369 IWGLAIHGRYEQAIQYFKKMMYS---GTEPD----GTVFLAILTACWYSGQVKLALNFFDSMRFD----YF-IEPS-VKH 435 (636)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~m~~~---g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----~~-~~p~-~~~ 435 (636)
+..+.+.|++++|+.++++.++. -+.|+ ..+++.+..+|...|++++|+.+++++..- +| -.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44566788999999999888752 13343 247888888999999999999999877632 22 1222 567
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHhc-cCCCCchhHHH
Q 006672 436 HTVVVNLLSRVGQDSQGYQNSQNSFTKLLQ-LKPKHPSSYVL 476 (636)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-l~p~~~~~~~~ 476 (636)
++.|+.+|...|++++|+.+++++.+-... +.|+++.+-.+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 899999999999999999999988765544 46766655443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0099 Score=44.98 Aligned_cols=79 Identities=14% Similarity=0.152 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHH
Q 006672 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341 (636)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 341 (636)
..|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+.+.. +.+...+..+..++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 445555666666666666666666665542 2244455555555666666666666666655543 33444444444444
Q ss_pred h
Q 006672 342 A 342 (636)
Q Consensus 342 ~ 342 (636)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0066 Score=61.76 Aligned_cols=100 Identities=11% Similarity=0.068 Sum_probs=72.0
Q ss_pred cCChHHHHHHHHHHhH---cCCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHhHhh----cCC-CCC-hhHHHHHHH
Q 006672 375 HGRYEQAIQYFKKMMY---SGTEPD----GTVFLAILTACWYSGQVKLALNFFDSMRFD----YFI-EPS-VKHHTVVVN 441 (636)
Q Consensus 375 ~g~~~~A~~~~~~m~~---~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----~~~-~p~-~~~~~~l~~ 441 (636)
.|++++|+.++++.++ .-+.|+ ..+++.+..+|...|++++|..++++..+- +|- .|+ ..+|+.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4677888888877665 223333 247888888999999999999888887532 231 233 567899999
Q ss_pred HHHhcCCchHHHHHHHHHHHHHhc-cCCCCchhH
Q 006672 442 LLSRVGQDSQGYQNSQNSFTKLLQ-LKPKHPSSY 474 (636)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~~~~~-l~p~~~~~~ 474 (636)
+|...|++++|+.+++++.+-... +.|+++.+-
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 999999999999999988765543 456665443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0047 Score=47.98 Aligned_cols=63 Identities=19% Similarity=0.292 Sum_probs=34.6
Q ss_pred HHHHhcCcHHHHHHHHHHhHhhcCCCC-Chh-HHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhH
Q 006672 405 TACWYSGQVKLALNFFDSMRFDYFIEP-SVK-HHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSY 474 (636)
Q Consensus 405 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~ 474 (636)
..+...|++++|...|++..+ ..| +.. .+..++.+|.+.|++++|.+.++++. +++|.++..+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al----~~~p~~~~~~ 72 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQ---TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI----ELNPDSPALQ 72 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH---HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH----HHCTTSTHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hcCCCcHHHH
Confidence 345556666666666666654 223 344 55566666666666666666655433 4455555444
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.022 Score=44.03 Aligned_cols=57 Identities=26% Similarity=0.259 Sum_probs=46.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HH-HHHHHHHHHHhcCcHHHHHHHHHHhHh
Q 006672 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GT-VFLAILTACWYSGQVKLALNFFDSMRF 425 (636)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~ 425 (636)
.....+...|++++|+..|++..+ ..|+ .. .+..+..++...|++++|.+.|++..+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQ--TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH--HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345667788999999999999888 4555 45 777788888899999999999998875
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.047 Score=53.32 Aligned_cols=67 Identities=10% Similarity=0.143 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCC
Q 006672 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH 470 (636)
Q Consensus 397 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~ 470 (636)
..++..+...+...|++++|...++++.. +.|+...|..+..++.-.|+.++|.+.|+++. .++|..
T Consensus 277 a~~~~alal~~l~~gd~d~A~~~l~rAl~---Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Al----rL~P~~ 343 (372)
T 3ly7_A 277 SIIYQIKAVSALVKGKTDESYQAINTGID---LEMSWLNYVLLGKVYEMKGMNREAADAYLTAF----NLRPGA 343 (372)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHSCSH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH----hcCCCc
Confidence 44554444444445666666666666654 22555555555666666666666666665333 445543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.22 Score=55.34 Aligned_cols=44 Identities=18% Similarity=0.257 Sum_probs=19.6
Q ss_pred hcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHH
Q 006672 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388 (636)
Q Consensus 343 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 388 (636)
.+|++++|.++.+.+. +...|..+...+.+.|+++.|++.|.++
T Consensus 664 ~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 664 KVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3444444444443332 2334444444444444444444444443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.072 Score=44.67 Aligned_cols=92 Identities=10% Similarity=0.034 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcC---cHHHHHHHHHHhHhhcCCCC--ChhHHHHHHHHHHhcCCchHH
Q 006672 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG---QVKLALNFFDSMRFDYFIEP--SVKHHTVVVNLLSRVGQDSQG 452 (636)
Q Consensus 378 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 452 (636)
...+.+.|.+..+.|. ++..+...+..++.+++ +.++|..+++...+. . .| ..+.+-.+.-++.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3456666666666554 67777777778888888 677999999998863 2 24 355666777788999999999
Q ss_pred HHHHHHHHHHHhccCCCCchhHHH
Q 006672 453 YQNSQNSFTKLLQLKPKHPSSYVL 476 (636)
Q Consensus 453 ~~~~~~~~~~~~~l~p~~~~~~~~ 476 (636)
.+.+++ +++++|+|..+...
T Consensus 91 ~~y~~~----lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 91 LKYVRG----LLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHH----HHHHCTTCHHHHHH
T ss_pred HHHHHH----HHhcCCCCHHHHHH
Confidence 999984 45779987655443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.92 E-value=0.058 Score=42.32 Aligned_cols=76 Identities=8% Similarity=0.024 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcC-----CCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCch
Q 006672 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYF-----IEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPS 472 (636)
Q Consensus 398 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~ 472 (636)
.....+...+...|+++.|...|+...+... -.+....+..++.+|.+.|++++|...++++. +++|.++.
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al----~l~P~~~~ 81 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL----ELDPEHQR 81 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTCHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH----hcCCCCHH
Confidence 3444566666677777777777776654221 12346778888899999999999999888554 67888877
Q ss_pred hHHHH
Q 006672 473 SYVLL 477 (636)
Q Consensus 473 ~~~~l 477 (636)
+...+
T Consensus 82 ~~~n~ 86 (104)
T 2v5f_A 82 ANGNL 86 (104)
T ss_dssp HHHHH
T ss_pred HHhhH
Confidence 65554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.76 E-value=0.098 Score=43.87 Aligned_cols=83 Identities=10% Similarity=-0.073 Sum_probs=65.6
Q ss_pred cHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcC---CchHHHHHHHHHHHHHhccC-C-CCchhHHHHHHHHHHcCC
Q 006672 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG---QDSQGYQNSQNSFTKLLQLK-P-KHPSSYVLLSNIYAAEGR 486 (636)
Q Consensus 412 ~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~l~-p-~~~~~~~~l~~~~~~~g~ 486 (636)
....+++-|.+..+ .+ .++..+...+..++.+.+ +.+++..+++...+. + | ++...+..|+-+|.+.|+
T Consensus 13 ~l~~~~~~y~~e~~-~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~----~~p~~~rd~lY~LAv~~~kl~~ 86 (152)
T 1pc2_A 13 DLLKFEKKFQSEKA-AG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK----GSKEEQRDYVFYLAVGNYRLKE 86 (152)
T ss_dssp HHHHHHHHHHHHHH-TT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH----SCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHc-cC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----CCccchHHHHHHHHHHHHHccC
Confidence 34556666666653 23 378889999999999988 667999998866653 4 5 457788899999999999
Q ss_pred hhHHHHHHHHHHhC
Q 006672 487 WKDVARVRTLMQRR 500 (636)
Q Consensus 487 ~~~A~~~~~~m~~~ 500 (636)
+++|.+.++.+.+.
T Consensus 87 Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 87 YEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999883
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.031 Score=52.32 Aligned_cols=87 Identities=10% Similarity=0.068 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhHhhcCCCCC---hhHHHHHHHHHHh-----cCCchHHHHHHHHHHHHHhccCCCC-chhHHHHHHHHHH
Q 006672 413 VKLALNFFDSMRFDYFIEPS---VKHHTVVVNLLSR-----VGQDSQGYQNSQNSFTKLLQLKPKH-PSSYVLLSNIYAA 483 (636)
Q Consensus 413 ~~~a~~~~~~m~~~~~~~p~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~l~p~~-~~~~~~l~~~~~~ 483 (636)
...|...+++..+ +.|+ -..|..++..|.+ -|+.++|.+.|+++ ++++|.. ..++..++..++.
T Consensus 179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferA----L~LnP~~~id~~v~YA~~l~~ 251 (301)
T 3u64_A 179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHL----TRYCSAHDPDHHITYADALCI 251 (301)
T ss_dssp HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHH----HHHCCTTCSHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHH----HHhCCCCCchHHHHHHHHHHH
Confidence 3455555555553 4555 4466777777777 37788887777744 3667753 7777778887777
Q ss_pred c-CChhHHHHHHHHHHhCCCccCC
Q 006672 484 E-GRWKDVARVRTLMQRRSIKKDP 506 (636)
Q Consensus 484 ~-g~~~~A~~~~~~m~~~g~~~~~ 506 (636)
. |+.++|.+.+++........+|
T Consensus 252 ~~gd~~~a~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 252 PLNNRAGFDEALDRALAIDPESVP 275 (301)
T ss_dssp TTTCHHHHHHHHHHHHHCCGGGCS
T ss_pred hcCCHHHHHHHHHHHHcCCCCCCC
Confidence 4 7788888888888775554334
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.23 Score=46.46 Aligned_cols=139 Identities=14% Similarity=0.155 Sum_probs=89.0
Q ss_pred cCCHHHHHHHHhhccCCCh--hcHHHHHHH-HHHc--C------ChHHHHHHHHHHhHcCCCCC---HHHHHHHHHHHHh
Q 006672 344 CGNIEAASLVFGETKEKDL--LTWTAMIWG-LAIH--G------RYEQAIQYFKKMMYSGTEPD---GTVFLAILTACWY 409 (636)
Q Consensus 344 ~g~~~~A~~~~~~~~~~~~--~~~~~li~~-~~~~--g------~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~ 409 (636)
.++...-.+.+.+..+.++ ..|..++.+ +... | ....|...+++.++ +.|+ ...|..+...|..
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence 3444444455555554433 356665553 2332 2 24677788888888 7777 4577778777877
Q ss_pred c-----CcHHHHHHHHHHhHhhcCCCC--ChhHHHHHHHHHHhc-CCchHHHHHHHHHHHHHhccCCCC-chhHHHHHHH
Q 006672 410 S-----GQVKLALNFFDSMRFDYFIEP--SVKHHTVVVNLLSRV-GQDSQGYQNSQNSFTKLLQLKPKH-PSSYVLLSNI 480 (636)
Q Consensus 410 ~-----g~~~~a~~~~~~m~~~~~~~p--~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~l~p~~-~~~~~~l~~~ 480 (636)
. |+.++|.+.|++..+ +.| +..++..+.+.|++. |+.++|.+.++++. ...|.. +. ..+.+.
T Consensus 212 vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL----~a~p~~~P~--~~lan~ 282 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRAGFDEALDRAL----AIDPESVPH--NKLLVI 282 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHH----HCCGGGCSS--CHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH----cCCCCCCCC--hhHHHH
Confidence 4 899999999999986 566 378888889988884 89999999888665 444432 22 233333
Q ss_pred HHHcCChhHHHHHHHHH
Q 006672 481 YAAEGRWKDVARVRTLM 497 (636)
Q Consensus 481 ~~~~g~~~~A~~~~~~m 497 (636)
++-++|..+++++
T Consensus 283 ----~~q~eA~~LL~~~ 295 (301)
T 3u64_A 283 ----LSQKRARWLKAHV 295 (301)
T ss_dssp ----HHHHHHHHHHHTH
T ss_pred ----HHHHHHHHHHHHh
Confidence 2334566655544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.21 E-value=1 Score=38.75 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=26.4
Q ss_pred hhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHh
Q 006672 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389 (636)
Q Consensus 342 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 389 (636)
..+|+++.|.++.+.+ .+...|..+......+|+++-|.+.|++..
T Consensus 16 L~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 4455666665555544 344556666666666666666666666543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.21 E-value=0.11 Score=40.76 Aligned_cols=70 Identities=7% Similarity=-0.080 Sum_probs=57.9
Q ss_pred CChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc---CCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 431 PSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQL---KPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 431 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
.++.-+-.++..+.+.|+++.|...++.+.+..-.- .+..+.++..|+.+|.+.|++++|...++++.+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 345566788999999999999999999888664321 2345678999999999999999999999999873
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.02 E-value=0.3 Score=39.36 Aligned_cols=93 Identities=9% Similarity=-0.015 Sum_probs=63.6
Q ss_pred ChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHH---HHHHHHHhHhhcCCCC--ChhHHHHHHHHHHhcCCchH
Q 006672 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL---ALNFFDSMRFDYFIEP--SVKHHTVVVNLLSRVGQDSQ 451 (636)
Q Consensus 377 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~m~~~~~~~p--~~~~~~~l~~~~~~~g~~~~ 451 (636)
....+.+-|.+....|. |+..+-..+..++.++....+ ++.+++.+.+. -.| ..+..-.|.-++.|.|++++
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhhHHH
Confidence 34455566666555444 666666677778888876655 88999888752 123 23444556678899999999
Q ss_pred HHHHHHHHHHHHhccCCCCchhHHH
Q 006672 452 GYQNSQNSFTKLLQLKPKHPSSYVL 476 (636)
Q Consensus 452 A~~~~~~~~~~~~~l~p~~~~~~~~ 476 (636)
|.+.++ .+++.+|.|..+...
T Consensus 93 A~~~~~----~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 93 ALKYVR----GLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHH----HHHHHCTTCHHHHHH
T ss_pred HHHHHH----HHHHhCCCCHHHHHH
Confidence 999988 455779987665543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.82 E-value=1.1 Score=38.49 Aligned_cols=104 Identities=10% Similarity=-0.058 Sum_probs=68.0
Q ss_pred HHhhcCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHH
Q 006672 71 SSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150 (636)
Q Consensus 71 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 150 (636)
.....+|+++.|.++.+.+ .+...|..|.......|+++-|.+.|..... |..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445678888888877665 4566788888888888888888888887653 4445445555666665555
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 006672 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191 (636)
Q Consensus 151 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 191 (636)
+-+.....| -+|.....+.-.|+++++.++|.+.-
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 544444443 13444455666777777777775543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.099 Score=39.98 Aligned_cols=44 Identities=11% Similarity=0.149 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhHcCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHhH
Q 006672 379 EQAIQYFKKMMYSGTEPDG-TVFLAILTACWYSGQVKLALNFFDSMR 424 (636)
Q Consensus 379 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~ 424 (636)
++|..++++.++ ..|+. .....+...+...|++++|...|+++.
T Consensus 26 ~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 26 DEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444 33332 233333344444444444444444444
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.25 E-value=1.8 Score=35.06 Aligned_cols=33 Identities=15% Similarity=0.129 Sum_probs=14.5
Q ss_pred CchhHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 006672 470 HPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502 (636)
Q Consensus 470 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 502 (636)
++....-++++|.+-|+..+|.+++.++-++|+
T Consensus 124 ~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 124 SASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 344444444444444444444444444444443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.21 E-value=1.8 Score=35.00 Aligned_cols=119 Identities=14% Similarity=0.013 Sum_probs=84.6
Q ss_pred cCCHHHHHHHHhhccC-CChhcHHHHHHHHHHcCChHHHHHHHHHHhHc-CCCC----------------CHHHHHHHHH
Q 006672 344 CGNIEAASLVFGETKE-KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS-GTEP----------------DGTVFLAILT 405 (636)
Q Consensus 344 ~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p----------------~~~t~~~ll~ 405 (636)
.|.+++..++..+... .+..-||-+|.-....-+-+-..+.++..-+- .+.+ +..-+...+.
T Consensus 20 dG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~vd~ALd 99 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVNKALD 99 (172)
T ss_dssp TTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHHHHHHHH
Confidence 5777888888877765 45556666676666666777777777765441 1111 1222444566
Q ss_pred HHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHh
Q 006672 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLL 464 (636)
Q Consensus 406 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 464 (636)
.....|.-|+-.+++..+. .+.+|+++..-.+..+|.+.|+..+|.++..++.++++
T Consensus 100 ~lv~~~KkDqLdki~~~~l--~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 100 ILVIQGKRDKLEEIGREIL--KNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhccHhHHHHHHHHHh--ccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 6777778887777777766 36788999999999999999999999999999987754
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.39 E-value=3.8 Score=41.55 Aligned_cols=181 Identities=8% Similarity=0.012 Sum_probs=99.6
Q ss_pred CChHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH-cCCCCchhHHHHHhh----HHhhc
Q 006672 275 GEAEKALAMFFQMLD-----AGVRANDFTVVSALSACAKVGALEAGVRVHNYISC-NDFGLKGAIGTALVD----MYAKC 344 (636)
Q Consensus 275 g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~----~~~~~ 344 (636)
|++++|++.+..+.+ .+..........++..|...++++...+.+..+.+ +|... .....+++ .....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhcC
Confidence 678889888776664 23455667788888899999999888777766654 33222 22223332 22222
Q ss_pred CCH--HHHHHHHhhccC---CC-------hhcHHHHHHHHHHcCChHHHHHHHHHHhHc--CCCCCH---HHHHHHHHHH
Q 006672 345 GNI--EAASLVFGETKE---KD-------LLTWTAMIWGLAIHGRYEQAIQYFKKMMYS--GTEPDG---TVFLAILTAC 407 (636)
Q Consensus 345 g~~--~~A~~~~~~~~~---~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~---~t~~~ll~a~ 407 (636)
... +.-..+.+.... .- ......|...|...|++.+|..++.++... |..+.. ..+...+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 222 222223322221 10 112344566677777777777777776542 222211 2344455666
Q ss_pred HhcCcHHHHHHHHHHhHhh-cCCCCC----hhHHHHHHHHHHhcCCchHHHHHHH
Q 006672 408 WYSGQVKLALNFFDSMRFD-YFIEPS----VKHHTVVVNLLSRVGQDSQGYQNSQ 457 (636)
Q Consensus 408 ~~~g~~~~a~~~~~~m~~~-~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (636)
...+++..|..+++++... ....+. ...|.+++..+...+++.+|...|.
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~ 242 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQ 242 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 6777777777777665321 112222 2345666666666666666666555
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.28 E-value=0.7 Score=38.25 Aligned_cols=117 Identities=12% Similarity=0.243 Sum_probs=79.2
Q ss_pred CCCCCcchHHHHHHHHHhCCCc------hHHHHHHHHhHHCCCCCCcc----cHHHHHHH---HHccCChHHHHHHHHHH
Q 006672 89 FTPKNLHIFNVLIRGLAENSHF------QSCISHFVFMLRLSVRPNRL----TYPFVSKS---VASLSLLSLGRGLHCLI 155 (636)
Q Consensus 89 ~~~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~----t~~~ll~~---~~~~~~~~~a~~~~~~~ 155 (636)
|.+.|..+|=..+...-+.|++ +..+++|++.... ++|+.. .|..+.-- +...++.+.|+++|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3466888888888888888888 7888888887763 555432 22222111 12347889999999999
Q ss_pred HHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHH
Q 006672 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208 (636)
Q Consensus 156 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 208 (636)
++.+-.- ..+|......-.+.|+++.|++++......+ +.+.......+.-
T Consensus 87 ~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~-~k~~~~le~a~~n 137 (161)
T 4h7y_A 87 RANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG-AVPLEMLEIALRN 137 (161)
T ss_dssp HHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CBCHHHHHHHHHH
T ss_pred HHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC-CCcHHHHHHHHHh
Confidence 8764333 7778777788888999999999998877665 4444444444443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.83 E-value=1.3 Score=36.75 Aligned_cols=109 Identities=13% Similarity=0.096 Sum_probs=74.0
Q ss_pred CCChhcHHHHHHHHHHcCCh------HHHHHHHHHHhHcCCCCCHH----HHHHHHH---HHHhcCcHHHHHHHHHHhHh
Q 006672 359 EKDLLTWTAMIWGLAIHGRY------EQAIQYFKKMMYSGTEPDGT----VFLAILT---ACWYSGQVKLALNFFDSMRF 425 (636)
Q Consensus 359 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~----t~~~ll~---a~~~~g~~~~a~~~~~~m~~ 425 (636)
..|..+|-..+...-+.|+. ++..++|++.... ++|+.. .|..+.- .+...+++++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45778888888888888888 8888888888774 666431 1222211 12344788889999988875
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhH
Q 006672 426 DYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSY 474 (636)
Q Consensus 426 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~ 474 (636)
. .-.- ...|......-.|+|+++.|.+++.++. .+.|.+....
T Consensus 89 ~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~Ai----G~~~k~~~~l 131 (161)
T 4h7y_A 89 N-CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAV----ERGAVPLEML 131 (161)
T ss_dssp H-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHH----HTTCBCHHHH
T ss_pred H-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHh----ccCCCcHHHH
Confidence 3 2222 7777777777788999999998888555 4566554433
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.48 E-value=1.2 Score=37.64 Aligned_cols=95 Identities=9% Similarity=-0.054 Sum_probs=55.4
Q ss_pred HHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-------hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC--------
Q 006672 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPS-------VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLK-------- 467 (636)
Q Consensus 403 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~-------- 467 (636)
-+..+...|.++.|+-+.+.+..-.+..|+ ..++..+++++...|++..|...|+++.+....+.
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 344555566666666555554322222222 13445566666666777777766666543332111
Q ss_pred -------------CCCchhHHHHHHHHHHcCChhHHHHHHHHH
Q 006672 468 -------------PKHPSSYVLLSNIYAAEGRWKDVARVRTLM 497 (636)
Q Consensus 468 -------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 497 (636)
+.+...-.-++.+|.+.|++++|+.+++.+
T Consensus 106 ~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 106 TGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp -----------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred ccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 112245567899999999999999998754
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=92.41 E-value=3.4 Score=40.91 Aligned_cols=94 Identities=9% Similarity=-0.050 Sum_probs=44.5
Q ss_pred HHHHHHhcCcHHHHHHHHHHhHhhcCCCCC----hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCch----hH
Q 006672 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPS----VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPS----SY 474 (636)
Q Consensus 403 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~----~~ 474 (636)
+...|...|++.+|.+++..+.++..-..+ .+.|..-+.+|...|++.++...+..+..-.-.+.| +|. ..
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~-~p~i~a~i~ 183 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC-PPKVQGALD 183 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-CHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCC-CHHHHHHHH
Confidence 445555566666665555555543221111 344555555566666666666666554433322211 111 12
Q ss_pred HHHHHHHH-HcCChhHHHHHHHHH
Q 006672 475 VLLSNIYA-AEGRWKDVARVRTLM 497 (636)
Q Consensus 475 ~~l~~~~~-~~g~~~~A~~~~~~m 497 (636)
..-+-.+. ..++|.+|...|-+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 22233344 456666665555443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=92.31 E-value=0.0011 Score=66.11 Aligned_cols=201 Identities=13% Similarity=0.128 Sum_probs=113.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCC--CChHHHHHHHHHHHh
Q 006672 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK--KNVASWVSLIDGFMR 242 (636)
Q Consensus 165 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~ 242 (636)
.+|..|..++.+.+++.+|.+.|=+ ..|...|..+|.+..+.|.+++-+.++.-.++ .++.+=+.|+.+|++
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk 128 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAK 128 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHT
T ss_pred cHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHh
Confidence 3444555555555555554443321 22444455555555555555555555544442 334444555555555
Q ss_pred cCCHH----------------------------HHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 006672 243 KGDLK----------------------------KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294 (636)
Q Consensus 243 ~g~~~----------------------------~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 294 (636)
.+++. .|.-+|..+.. |.-|...+.+.|++..|.+.- . -.-
T Consensus 129 ~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaA---r---KAn 197 (624)
T 3lvg_A 129 TNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGA---R---KAN 197 (624)
T ss_dssp SCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTT---T---TCC
T ss_pred hCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHH---H---hcC
Confidence 55544 33333333222 233334444555555444321 1 123
Q ss_pred CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHH
Q 006672 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWG 371 (636)
Q Consensus 295 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 371 (636)
+..||..+-.+|...+.+..|...--.++- .+.-...++..|-..|.+++-..+++.... ...-.++-|.-.
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaIL 272 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAIL 272 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 567899999999999988776554433332 222234578889999999998888887653 466788888888
Q ss_pred HHHcCChHHHHHHHHHH
Q 006672 372 LAIHGRYEQAIQYFKKM 388 (636)
Q Consensus 372 ~~~~g~~~~A~~~~~~m 388 (636)
|++- ++++..+.++-.
T Consensus 273 YsKY-~PeKlmEHlklf 288 (624)
T 3lvg_A 273 YSKF-KPQKMREHLELF 288 (624)
T ss_dssp HHSS-CTTHHHHHHTTS
T ss_pred HHhc-CHHHHHHHHHHH
Confidence 8875 456666655543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.39 E-value=0.78 Score=49.55 Aligned_cols=122 Identities=15% Similarity=0.097 Sum_probs=74.9
Q ss_pred HHHHHcCC-hHHHHHHHHHHhHcCCCCCHHH-H-HHHHHHHHhcC-cHHHHHHHHHHhHhh-----cCCCCCh-------
Q 006672 370 WGLAIHGR-YEQAIQYFKKMMYSGTEPDGTV-F-LAILTACWYSG-QVKLALNFFDSMRFD-----YFIEPSV------- 433 (636)
Q Consensus 370 ~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t-~-~~ll~a~~~~g-~~~~a~~~~~~m~~~-----~~~~p~~------- 433 (636)
..+...|+ ++.|+.+|+++.+. .|...+ + ..++..+...+ .--+|.+++.+..+. ....+..
T Consensus 256 ~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~ 333 (754)
T 4gns_B 256 SFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLM 333 (754)
T ss_dssp HHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred HHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccccc
Confidence 33334455 57788888888773 343322 2 22233333322 222344444443321 0122211
Q ss_pred ----hHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHH
Q 006672 434 ----KHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLM 497 (636)
Q Consensus 434 ----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 497 (636)
.....-++.+...|+++-|+++.+++ +...|.+-.+|..|+.+|...|+|+.|+-.+..+
T Consensus 334 ~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~A----V~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 334 NCMSDLLNIQTNFLLNRGDYELALGVSNTS----TELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH----HHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred CcchHHHHHHHHHHhccCcHHHHHHHHHHH----HhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 12223345567789999999887754 5678999999999999999999999999998876
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=90.54 E-value=4.4 Score=32.53 Aligned_cols=85 Identities=11% Similarity=-0.051 Sum_probs=61.7
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchH---HHHHHHHHHHHHhccC-C-CCchhHHHHHHHHHHc
Q 006672 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQ---GYQNSQNSFTKLLQLK-P-KHPSSYVLLSNIYAAE 484 (636)
Q Consensus 410 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~l~-p-~~~~~~~~l~~~~~~~ 484 (636)
......+.+-|..... .| .|+..+--.+..++.+.....+ ++.+++. ++..+ | ........|+-++.+.
T Consensus 14 ~~~l~~~~~~y~~e~~-~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~----l~~~~~p~~~Rd~lY~LAvg~ykl 87 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKA-AG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEE----LLPKGSKEEQRDYVFYLAVGNYRL 87 (126)
T ss_dssp HHHHHHHHHHHHHHHH-HS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHH----HTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc-cC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----HHhcCCcchHHHHHHHHHHHHHHh
Confidence 3344555566665543 23 3788888889999999888777 6666664 33444 4 3456777899999999
Q ss_pred CChhHHHHHHHHHHhC
Q 006672 485 GRWKDVARVRTLMQRR 500 (636)
Q Consensus 485 g~~~~A~~~~~~m~~~ 500 (636)
|++++|.+..+.+.+.
T Consensus 88 g~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 88 KEYEKALKYVRGLLQT 103 (126)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHh
Confidence 9999999999999883
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=90.51 E-value=3.3 Score=31.30 Aligned_cols=60 Identities=15% Similarity=0.182 Sum_probs=40.9
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 006672 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300 (636)
Q Consensus 238 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 300 (636)
..+...|++++|..+.+...-||++.|-+|-. .+.|..+++...+.++..+| .|....|.
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 34667788888888888888888888876643 35667777777776776665 45444443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=90.41 E-value=3 Score=31.44 Aligned_cols=60 Identities=10% Similarity=0.069 Sum_probs=44.1
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 006672 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300 (636)
Q Consensus 238 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 300 (636)
..+...|++++|..+.+...-||++.|-+|-. .+.|..+++...+.++..+| .|....|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 45677888888888888888888888876643 46777888888777777776 55555544
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=89.69 E-value=23 Score=37.44 Aligned_cols=422 Identities=7% Similarity=-0.042 Sum_probs=221.1
Q ss_pred HHHHHHHHhcCC--hHHHHHHHHHHHHh-CCCCChhHHHHHHHHhhcCCChHHHHHHhccCCCCCcchHHHHHHHHHhCC
Q 006672 32 THIISLIHSSNS--TKQLRQIHAQIILH-NLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108 (636)
Q Consensus 32 ~~~~~~l~~~~~--~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 108 (636)
..+..+....+. +. ++-..+.+. |.+.....-+.-+..+++.+++......+.. ++.+...-.....+....|
T Consensus 41 l~y~~l~~~l~~~~~~---ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G 116 (618)
T 1qsa_A 41 LEYRQITDDLMNQPAV---TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTG 116 (618)
T ss_dssp HHHHHHHHTGGGCCHH---HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCcccCCHH---HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcC
Confidence 345555444432 33 444444443 2222334455666777888899988887776 5555555556677788889
Q ss_pred CchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 006672 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188 (636)
Q Consensus 109 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 188 (636)
+..+|......+-..|- ........++..+.+.|.+ .+..++. -+......|+...|..+..
T Consensus 117 ~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~l----------------t~~~~~~-R~~~al~~~~~~~a~~l~~ 178 (618)
T 1qsa_A 117 QSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQ----------------DPLAYLE-RIRLAMKAGNTGLVTVLAG 178 (618)
T ss_dssp CHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCS----------------CHHHHHH-HHHHHHHTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCC----------------CHHHHHH-HHHHHHHCCCHHHHHHHHH
Confidence 88888888888776552 2334445555554443332 2222222 2345567778888888776
Q ss_pred hCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChH---HHHHHHHHHHhcCCHHHHHHHHhhCCC---CC--
Q 006672 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA---SWVSLIDGFMRKGDLKKAGELFEQMPE---KG-- 260 (636)
Q Consensus 189 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~---~~-- 260 (636)
.+. .........++..+.. ...+....... .++.. .+...+.-+.+. +.+.|...|..... .+
T Consensus 179 ~l~----~~~~~~a~~~~al~~~---p~~~~~~~~~~-~~~~~~~~~~~~~~~rlar~-d~~~A~~~~~~~~~~~~~~~~ 249 (618)
T 1qsa_A 179 QMP----ADYQTIASAIISLANN---PNTVLTFARTT-GATDFTRQMAAVAFASVARQ-DAENARLMIPSLAQAQQLNED 249 (618)
T ss_dssp TCC----GGGHHHHHHHHHHHHC---GGGHHHHHHHS-CCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHTTCCHH
T ss_pred hCC----HHHHHHHHHHHHHHhC---hHhHHHHHhcc-CCChhhHHHHHHHHHHHHhc-CHHHHHHHHHhhhhccCCCHH
Confidence 653 2222222333332222 23333333332 22222 111222223333 67888888866532 12
Q ss_pred --hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHh
Q 006672 261 --VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338 (636)
Q Consensus 261 --~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 338 (636)
...+..++..+...+...++...+....... ++.....-.+....+.|+++.+...+..+.... .......--+.
T Consensus 250 ~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~-~~~~r~~YW~~ 326 (618)
T 1qsa_A 250 QIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQA 326 (618)
T ss_dssp HHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccc-cccHhHHHHHH
Confidence 1234444445555564566667777655432 333333334444456789998888887775422 12333344566
Q ss_pred hHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC---HH---HHHHHHHHHHhcCc
Q 006672 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD---GT---VFLAILTACWYSGQ 412 (636)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~---t~~~ll~a~~~~g~ 412 (636)
.++...|+.++|..+|..+..+. +|-.++.+ .+.|..-. . ....+.+. .. .-...+..+...|.
T Consensus 327 ra~~~~g~~~~a~~~~~~~a~~~--~fYg~lAa-~~Lg~~~~-~------~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~ 396 (618)
T 1qsa_A 327 DLLLERGREAEAKEILHQLMQQR--GFYPMVAA-QRIGEEYE-L------KIDKAPQNVDSALTQGPEMARVRELMYWNL 396 (618)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC--SHHHHHHH-HHTTCCCC-C------CCCCCCSCCCCHHHHSHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHhcCC--ChHHHHHH-HHcCCCCC-C------CCCCCChhHHhhhccChHHHHHHHHHHCCC
Confidence 67778899999999988887653 44333322 22232100 0 00001111 00 11223445678899
Q ss_pred HHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC---CCCchhHHHHHHHHHHcCChhH
Q 006672 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLK---PKHPSSYVLLSNIYAAEGRWKD 489 (636)
Q Consensus 413 ~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~---p~~~~~~~~l~~~~~~~g~~~~ 489 (636)
...|...+..+.. + .+......+.....+.|..+.+.....+.. ..+ ..-|..|..++.-+++.-..+.
T Consensus 397 ~~~a~~ew~~~~~--~--~~~~~~~~la~~a~~~~~~~~~v~~~~~~~----~~~~~~~~~P~~y~~~i~~~a~~~gv~~ 468 (618)
T 1qsa_A 397 DNTARSEWANLVK--S--KSKTEQAQLARYAFNNQWWDLSVQATIAGK----LWDHLEERFPLAYNDLFKRYTSGKEIPQ 468 (618)
T ss_dssp HHHHHHHHHHHHT--T--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT----CTTCHHHHSCCTTHHHHHHHHTTSSSCH
T ss_pred hhhHHHHHHHHHh--c--CCHHHHHHHHHHHHHCCChHHHHHHHHHHH----hhcchhhhCCcchHHHHHHHHHHcCCCH
Confidence 9999998888764 2 233334455666677788777765443211 000 0012345555666665555555
Q ss_pred HHHHHHHHHhCCCccC
Q 006672 490 VARVRTLMQRRSIKKD 505 (636)
Q Consensus 490 A~~~~~~m~~~g~~~~ 505 (636)
++-.---.++.+..|.
T Consensus 469 ~ll~Ai~~~ES~f~p~ 484 (618)
T 1qsa_A 469 SYAMAIARQESAWNPK 484 (618)
T ss_dssp HHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHhCCCCCC
Confidence 4433333445555554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.28 E-value=15 Score=42.27 Aligned_cols=189 Identities=13% Similarity=0.048 Sum_probs=120.3
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCC--------------------
Q 006672 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK-------------------- 360 (636)
Q Consensus 301 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------- 360 (636)
.++..+...+..+.+.++.... +.++...-.+..+|..+|++++|.+.|.+....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 3555566667777666554332 344555556778899999999999999876431
Q ss_pred ------ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCH----HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCC
Q 006672 361 ------DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG----TVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430 (636)
Q Consensus 361 ------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 430 (636)
-..-|.-++..+.++|.++.++++-+..++..-.-+. ..|..+.+++...|++++|...+-.+.. ..
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd-~~-- 968 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST-TP-- 968 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH-SS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC-HH--
Confidence 0112566778888999999999988887764222121 2578888999999999999988877752 22
Q ss_pred CChhHHHHHHHHHHhcCCch------------HHHHHHHHHHHHHhccCCCC-chhHHHHHHHHHHcCChhHHHH-HHHH
Q 006672 431 PSVKHHTVVVNLLSRVGQDS------------QGYQNSQNSFTKLLQLKPKH-PSSYVLLSNIYAAEGRWKDVAR-VRTL 496 (636)
Q Consensus 431 p~~~~~~~l~~~~~~~g~~~------------~A~~~~~~~~~~~~~l~p~~-~~~~~~l~~~~~~~g~~~~A~~-~~~~ 496 (636)
-.......+|..++..|..+ +..+++..-++... ++.+ +..|..|-.-+...|++..|.. +|+.
T Consensus 969 ~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~--~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~ 1046 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMI--NVESQPCWYNILFSWRYKHQNYRDAAAIIYEK 1046 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHH--HHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCC--ccccCCCHHHHhHhhhhccCChHHHHHHHHHH
Confidence 23455666776666655544 33334332222211 2222 3456666666777888876654 4666
Q ss_pred HHh
Q 006672 497 MQR 499 (636)
Q Consensus 497 m~~ 499 (636)
+.+
T Consensus 1047 ~~R 1049 (1139)
T 4fhn_B 1047 LSR 1049 (1139)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=88.42 E-value=21 Score=35.27 Aligned_cols=220 Identities=11% Similarity=0.025 Sum_probs=120.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCcHHHHHHHHHHHH--cCCCCchhHHH---
Q 006672 266 AMINGFSQNGEAEKALAMFFQMLDAGVRAN-----DFTVVSALSACAKVGALEAGVRVHNYISC--NDFGLKGAIGT--- 335 (636)
Q Consensus 266 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~--- 335 (636)
-++..|...|++.+|+.++.++.+.=-..| ...+..-+..|...+++..+...+..... ..+.+++.+..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 567888889999999888888876311112 12344555667788888888888877764 22323333322
Q ss_pred -HHhhHHh-hcCCHHHHHHHHhhccC----C------ChhcHHHHHHHHHHcCChHHHHHHHH-HHhHcCCCCCHHHHHH
Q 006672 336 -ALVDMYA-KCGNIEAASLVFGETKE----K------DLLTWTAMIWGLAIHGRYEQAIQYFK-KMMYSGTEPDGTVFLA 402 (636)
Q Consensus 336 -~li~~~~-~~g~~~~A~~~~~~~~~----~------~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~p~~~t~~~ 402 (636)
.-.-++. ..+++..|...|-+..+ - +...|..+ .+... ++..+.-.++. .....-..|+...+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL-~aLl~-~~r~el~~~l~~~~~~~~~~pei~~l~~ 261 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL-CKIML-GQSDDVNQLVSGKLAITYSGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHT-TCGGGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH-HHHHc-CCHHHHHHHhccccccccCCccHHHHHH
Confidence 2233455 68888888777655421 1 12223222 22222 23222222221 1111112344445666
Q ss_pred HHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 006672 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYA 482 (636)
Q Consensus 403 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~ 482 (636)
++.++ ..+++.+...+++.... .+..|+.....+-..+ .++.+....+. ..|-.......++..+.
T Consensus 262 L~~a~-~~~dl~~f~~iL~~~~~--~l~~D~~l~~h~~~L~---------~~Ir~~~L~~i--~~pYsrIsl~~iA~~l~ 327 (394)
T 3txn_A 262 VAEAS-HKRSLADFQAALKEYKK--ELAEDVIVQAHLGTLY---------DTMLEQNLCRI--IEPYSRVQVAHVAESIQ 327 (394)
T ss_dssp HHHHH-HTTCHHHHHHHHHHSTT--TTTTSHHHHHHHHHHH---------HHHHHHHHHHH--HTTCSEEEHHHHHHHHT
T ss_pred HHHHH-HhCCHHHHHHHHHHHHH--HHhcChHHHHHHHHHH---------HHHHHHHHHHH--hHhhceeeHHHHHHHHC
Confidence 66654 56677777777766543 3444544322221111 12223333333 24666677777776654
Q ss_pred HcCChhHHHHHHHHHHhCCCc
Q 006672 483 AEGRWKDVARVRTLMQRRSIK 503 (636)
Q Consensus 483 ~~g~~~~A~~~~~~m~~~g~~ 503 (636)
- ..+++....-+|...|.-
T Consensus 328 l--s~~evE~~L~~lI~dg~I 346 (394)
T 3txn_A 328 L--PMPQVEKKLSQMILDKKF 346 (394)
T ss_dssp C--CHHHHHHHHHHHHHTTSS
T ss_pred c--CHHHHHHHHHHHHHCCCe
Confidence 3 678999999999988753
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=87.77 E-value=14 Score=32.54 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=7.0
Q ss_pred ChhHHHHHHHHHHhcCC
Q 006672 163 DAFVRVHLADMYVQLGK 179 (636)
Q Consensus 163 ~~~~~~~li~~~~~~g~ 179 (636)
|..+....+..+.+.|.
T Consensus 32 ~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 34444444444444443
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=87.57 E-value=14 Score=32.26 Aligned_cols=18 Identities=22% Similarity=0.218 Sum_probs=7.4
Q ss_pred CChhHHHHHHHHHHhcCC
Q 006672 162 YDAFVRVHLADMYVQLGK 179 (636)
Q Consensus 162 ~~~~~~~~li~~~~~~g~ 179 (636)
+|..+....+..+.+.|.
T Consensus 26 ~~~~vr~~A~~~L~~~~~ 43 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGD 43 (201)
T ss_dssp SCHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 334444444444444443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=87.21 E-value=21 Score=33.92 Aligned_cols=181 Identities=12% Similarity=0.061 Sum_probs=108.3
Q ss_pred HHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHH----
Q 006672 208 GCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAM---- 283 (636)
Q Consensus 208 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l---- 283 (636)
.....|++=||.+. |.++..=|.+.+++++|.+++..- ...+.+.|+...|-++
T Consensus 22 ~~I~~G~yYEAhQ~-----------~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~ll 79 (312)
T 2wpv_A 22 NKIKAGDYYEAHQT-----------LRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYL 79 (312)
T ss_dssp HHHHHTCHHHHHHH-----------HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHH
T ss_pred HHhhccChHHHHHH-----------HHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHH
Confidence 34456777677665 456777788888888888876432 3345566776665554
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCcH-HHHHHHHHHH----HcC--CCCchhHHHHHhhHHhhcCCHHHHHHHHhh
Q 006672 284 FFQMLDAGVRANDFTVVSALSACAKVGALE-AGVRVHNYIS----CND--FGLKGAIGTALVDMYAKCGNIEAASLVFGE 356 (636)
Q Consensus 284 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 356 (636)
.+-..+.+++++......++..+.....-+ .=..+...++ +.| ..-++.....+...|.+.|++.+|+.-|-.
T Consensus 80 vev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~ 159 (312)
T 2wpv_A 80 LEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML 159 (312)
T ss_dssp HHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh
Confidence 444455688888888888877766533221 2233444443 222 224778888899999999999999987763
Q ss_pred ccCCChhcHHHHHHHHHHc---CChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHh
Q 006672 357 TKEKDLLTWTAMIWGLAIH---GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425 (636)
Q Consensus 357 ~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 425 (636)
....+...+..|+.-+... |...++-- ..-..++ -|.-.|+...|..+|+...+
T Consensus 160 ~~~~s~~~~a~~l~~w~~~~~~~~~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 160 GTHDSMIKYVDLLWDWLCQVDDIEDSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCCHHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHhcCCCCcchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 3323455555555444433 33322211 1111122 34457888888888876653
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.92 E-value=28 Score=35.12 Aligned_cols=221 Identities=10% Similarity=0.083 Sum_probs=127.8
Q ss_pred CCHHHHHHHHhhCC-----CCC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH----Hhc
Q 006672 244 GDLKKAGELFEQMP-----EKG----VVSWTAMINGFSQNGEAEKALAMFFQMLDA-GVRANDFTVVSALSAC----AKV 309 (636)
Q Consensus 244 g~~~~A~~~~~~~~-----~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~~~----~~~ 309 (636)
|+++.|.+.+-.+. ..| ......++..|...|+++...+.+..+... |..+.. ...++..+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence 67888877765443 122 345677888999999999988887766643 333322 23344333 233
Q ss_pred CCcHHHHH--HHHHHHH--cC-CCC---chhHHHHHhhHHhhcCCHHHHHHHHhhccC----C-C----hhcHHHHHHHH
Q 006672 310 GALEAGVR--VHNYISC--ND-FGL---KGAIGTALVDMYAKCGNIEAASLVFGETKE----K-D----LLTWTAMIWGL 372 (636)
Q Consensus 310 ~~~~~a~~--~~~~~~~--~~-~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~-~----~~~~~~li~~~ 372 (636)
...+.... +.+.+.. .| +-. ...+...|...|...|++.+|.+++.++.. . + +..+..-+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 33332111 1111110 11 111 223446788899999999999999988753 1 1 34677777888
Q ss_pred HHcCChHHHHHHHHHHhH----cCCCCCH--HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhc
Q 006672 373 AIHGRYEQAIQYFKKMMY----SGTEPDG--TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446 (636)
Q Consensus 373 ~~~g~~~~A~~~~~~m~~----~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~ 446 (636)
...+++.+|..++++... ....|+. ..+...+..+.+.+++.+|.+.| ..+.+.+...
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y----------------~e~~~~~~~~ 251 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYL----------------QEIYQTDAIK 251 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH----------------HHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHH----------------HHHHhccccc
Confidence 899999999999988743 2222221 23445555666777777765543 3345556666
Q ss_pred CCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHH
Q 006672 447 GQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAA 483 (636)
Q Consensus 447 g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~ 483 (636)
++.......+..+.--. -+.|.++.--..+...+..
T Consensus 252 ~d~~~~~~~L~~~v~~~-iLa~~~~~~~~ll~~~~~~ 287 (445)
T 4b4t_P 252 SDEAKWKPVLSHIVYFL-VLSPYGNLQNDLIHKIQND 287 (445)
T ss_dssp SCHHHHHHHHHHHHHHH-HHSSCSSTTHHHHHSHHHH
T ss_pred CCHHHHHHHHHHHHHHH-HhCCCCchHHHHHHHHhhc
Confidence 66655555555443322 2455555545555555544
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=85.71 E-value=5.2 Score=30.43 Aligned_cols=63 Identities=13% Similarity=0.103 Sum_probs=48.4
Q ss_pred ChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHH
Q 006672 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441 (636)
Q Consensus 377 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 441 (636)
+.-+..+-++.+....+-|++....+.+.||.+.+++..|.++|+.++.+.+ +...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 4556677777777788889999999999999999999999999998875443 33455665554
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=85.55 E-value=14 Score=30.30 Aligned_cols=26 Identities=12% Similarity=0.002 Sum_probs=12.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 474 YVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 474 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
...|+-++.+.|++++|.++.+.+.+
T Consensus 80 LYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 80 LYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 33444445555555555555544444
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=85.30 E-value=41 Score=35.52 Aligned_cols=115 Identities=8% Similarity=-0.057 Sum_probs=53.1
Q ss_pred ChHHHHHHHHHHhHcC-CCCCHH--HHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHH
Q 006672 377 RYEQAIQYFKKMMYSG-TEPDGT--VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY 453 (636)
Q Consensus 377 ~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 453 (636)
+.+.|..+|....+.. +.+... ....+.......+...++...+..... ..++.....-.+..-.+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHHHH
Confidence 5667777776665432 211111 222222233333423444444444332 1122222222222233557777777
Q ss_pred HHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHH
Q 006672 454 QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQ 498 (636)
Q Consensus 454 ~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 498 (636)
..|+.+... .+..+....=++.++...|+.++|..+|+.+.
T Consensus 306 ~~~~~l~~~----~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 306 TWLARLPME----AKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHHSCTT----GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcccc----ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 776643221 01123334455666667777777777776654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.94 E-value=4.1 Score=34.40 Aligned_cols=126 Identities=13% Similarity=0.093 Sum_probs=64.4
Q ss_pred HhhHHhhcCCHHHHHHHHhhccC-----CCh-------hcHHHHHHHHHHcCChHHHHHHHHHHhHcC-CCCCHH-HHHH
Q 006672 337 LVDMYAKCGNIEAASLVFGETKE-----KDL-------LTWTAMIWGLAIHGRYEQAIQYFKKMMYSG-TEPDGT-VFLA 402 (636)
Q Consensus 337 li~~~~~~g~~~~A~~~~~~~~~-----~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~-t~~~ 402 (636)
-+..+...|.++.|+-+.+-+.. +++ .+...+..++...|++.+|...|++.++.. .-|... +...
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 34556667777777666655332 221 144556666777777777777777764411 111111 1111
Q ss_pred HHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 006672 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIY 481 (636)
Q Consensus 403 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~ 481 (636)
+-. ...... .....++.+.---+..+|.+.|+.++|+..++.+- ..-+.+.+-.+|++.|
T Consensus 106 ~~~----~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip-----~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 106 TGN----SASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP-----SRQRTPKINMLLANLY 165 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC-----GGGCCHHHHHHHHHHC
T ss_pred ccc----cCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC-----chhcCHHHHHHHHHHh
Confidence 100 000000 01123344555557788999999999999887321 1223566666777665
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=84.73 E-value=1.8 Score=43.00 Aligned_cols=66 Identities=15% Similarity=0.100 Sum_probs=50.1
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh-----CCCccCC
Q 006672 437 TVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR-----RSIKKDP 506 (636)
Q Consensus 437 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~ 506 (636)
..+++.+.+.|++++|....+.. +..+|-+-..|..|+.+|.+.|+..+|.+.|++..+ .|+.|.+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~----~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEAL----TFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH----HHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH----HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 44667777888888888776643 466888888888888888888888888888887644 4776654
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=84.66 E-value=28 Score=33.04 Aligned_cols=112 Identities=9% Similarity=-0.004 Sum_probs=55.8
Q ss_pred HHHHHHHHhhcCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHH----HHHhHHCCCCCCcccHHHHHHHHH
Q 006672 65 ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISH----FVFMLRLSVRPNRLTYPFVSKSVA 140 (636)
Q Consensus 65 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~ 140 (636)
.+.++..-|.+.+++++|..++-. -...+.+.|+...|-++ .+...+.++++|..+...++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455666667777777777776543 12234455665555443 333344566666666666665554
Q ss_pred ccCChH-HHHHHHHHHHH----hC--CCCChhHHHHHHHHHHhcCChHHHHHHH
Q 006672 141 SLSLLS-LGRGLHCLIVK----SG--VEYDAFVRVHLADMYVQLGKTRGAFKVF 187 (636)
Q Consensus 141 ~~~~~~-~a~~~~~~~~~----~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~ 187 (636)
.....+ .-..+...+++ .| ...|+.....+...|.+.|++.+|+..|
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 422111 11222222222 21 1234455555555555555655555544
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=84.43 E-value=22 Score=40.91 Aligned_cols=52 Identities=13% Similarity=0.094 Sum_probs=34.1
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 006672 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287 (636)
Q Consensus 235 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 287 (636)
.++..+.+.+..+.|.++..-.+.. ...--.+..+|...|++++|.+.|++.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~~-~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNSD-PIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCCC-HHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHhhhHHHHHHHhhhccCC-cHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3555566667777777665555443 333345667788888888888888765
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=84.37 E-value=9.8 Score=30.71 Aligned_cols=78 Identities=8% Similarity=-0.024 Sum_probs=50.5
Q ss_pred CCCCCHHHHHHHHHHHHhcC---cHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCC
Q 006672 392 GTEPDGTVFLAILTACWYSG---QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKP 468 (636)
Q Consensus 392 g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p 468 (636)
+-.|+..|--.+..++.++. +..+|+.+++.+.+. +..-..+..-.+.-++.|.|++++|.+..+ .+++++|
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d----~lL~~eP 109 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVD----TLFEHER 109 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHH----HHHTTCT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHH----HHHhhCC
Confidence 34455555555566666655 445788888887752 211124455566778889999999988877 5567888
Q ss_pred CCchhH
Q 006672 469 KHPSSY 474 (636)
Q Consensus 469 ~~~~~~ 474 (636)
.|..+-
T Consensus 110 ~N~QA~ 115 (134)
T 3o48_A 110 NNKQVG 115 (134)
T ss_dssp TCHHHH
T ss_pred CCHHHH
Confidence 875443
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=83.97 E-value=47 Score=35.21 Aligned_cols=83 Identities=7% Similarity=0.018 Sum_probs=41.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhh---c
Q 006672 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK---C 344 (636)
Q Consensus 268 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~ 344 (636)
...+.-.|+++.|++++-+. ...+.+.+...+..+ |-+.....++..- .+ .| ..-+..||..|.+ .
T Consensus 301 f~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~---gLL~~~~~lls~~--~~-~~-~lN~arLI~~Yt~~F~~ 369 (661)
T 2qx5_A 301 LQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASL---KLFKIDSSTRLTK--KP-KR-DIRFANILANYTKSFRY 369 (661)
T ss_dssp HHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHT---TC---------------------CHHHHHHHHHTTTTT
T ss_pred HHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHc---CCccCCCcccccC--CC-cc-cccHHHHHHHHHHHhhc
Confidence 44556678888888877644 244555555555443 3222211111110 01 11 1124566767754 5
Q ss_pred CCHHHHHHHHhhccCCC
Q 006672 345 GNIEAASLVFGETKEKD 361 (636)
Q Consensus 345 g~~~~A~~~~~~~~~~~ 361 (636)
.+..+|.+.|--+.-++
T Consensus 370 td~~~Al~Y~~li~l~~ 386 (661)
T 2qx5_A 370 SDPRVAVEYLVLITLNE 386 (661)
T ss_dssp TCHHHHHHHHHGGGGSC
T ss_pred CCHHHHHHHHHHHhccC
Confidence 78888888777664443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.68 E-value=4.9 Score=43.42 Aligned_cols=50 Identities=20% Similarity=0.157 Sum_probs=35.2
Q ss_pred HHHcCChHHHHHHHHHHhHcCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHh
Q 006672 372 LAIHGRYEQAIQYFKKMMYSGTEPDG-TVFLAILTACWYSGQVKLALNFFDSM 423 (636)
Q Consensus 372 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m 423 (636)
+...|+++-|+++-++... ..|+. .+|..|..+|...|+++.|+-.++.+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4456777777777777776 56664 47777777777777777777777665
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=83.20 E-value=11 Score=28.46 Aligned_cols=78 Identities=13% Similarity=0.047 Sum_probs=53.4
Q ss_pred CcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhH
Q 006672 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (636)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 390 (636)
..++|..|-+.+...+. ...+--.-+..+.+.|++++|..+.+....||..+|-++-.. +.|..+++..-+.++-.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 45677777766665542 333333334557778889999988888888888888877653 56777777777766665
Q ss_pred cC
Q 006672 391 SG 392 (636)
Q Consensus 391 ~g 392 (636)
+|
T Consensus 98 sg 99 (116)
T 2p58_C 98 SQ 99 (116)
T ss_dssp CC
T ss_pred CC
Confidence 54
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=82.27 E-value=7.6 Score=38.49 Aligned_cols=69 Identities=20% Similarity=0.277 Sum_probs=51.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhH----hhcCCCCChhHH
Q 006672 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMR----FDYFIEPSVKHH 436 (636)
Q Consensus 366 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~~~p~~~~~ 436 (636)
..++..+...|++++|+..++.+.. ..| +...+..++.++...|+..+|.+.|+... ++.|+.|++.+-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 4456667778888888888888776 444 45678888888888888888888887754 346888887643
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=82.03 E-value=20 Score=29.38 Aligned_cols=76 Identities=7% Similarity=-0.054 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHHHHhcCc---HHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCC
Q 006672 394 EPDGTVFLAILTACWYSGQ---VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH 470 (636)
Q Consensus 394 ~p~~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~ 470 (636)
.|+..+--.+..++.++.. ..+++.+++.+.+. +..-.-+..-.|.-++.|.|++++|.++.+ .+++++|.|
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d----~lL~~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVD----TLFEHERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CCSTHHHHHHHHHHHHHTTTCHHHHHHHHH----HHHHTCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CccchhHHHHHHHHHHHHhhhHHHHHHHHH----HHHhcCCCc
Confidence 5666666666667777664 56788899888752 211123444556678999999999999887 556889987
Q ss_pred chhH
Q 006672 471 PSSY 474 (636)
Q Consensus 471 ~~~~ 474 (636)
..+-
T Consensus 111 ~QA~ 114 (144)
T 1y8m_A 111 KQVG 114 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=81.77 E-value=11 Score=28.54 Aligned_cols=78 Identities=13% Similarity=0.002 Sum_probs=54.2
Q ss_pred CcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhH
Q 006672 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (636)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 390 (636)
..++|..|-+.+...+. ...+--.-+..+.+.|++++|..+.+....||..+|-++-. .+.|..+++..-+.++-.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45677777776665542 33333333455778899999999888888888888887755 367777777777767666
Q ss_pred cC
Q 006672 391 SG 392 (636)
Q Consensus 391 ~g 392 (636)
+|
T Consensus 97 sg 98 (115)
T 2uwj_G 97 SS 98 (115)
T ss_dssp CS
T ss_pred CC
Confidence 54
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=81.60 E-value=38 Score=32.38 Aligned_cols=112 Identities=13% Similarity=0.026 Sum_probs=61.8
Q ss_pred HHHHHHHHhhcCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHH----HHhHHCCCCCCcccHHHHHHHHH
Q 006672 65 ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHF----VFMLRLSVRPNRLTYPFVSKSVA 140 (636)
Q Consensus 65 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~ 140 (636)
.+.++..-|.+.+++++|.+++-. -...+.+.|+...|-++- +...+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455666677778888888887542 123345556665555444 33445667777776666666665
Q ss_pred ccCChH-HHHHHHHHHH----HhC--CCCChhHHHHHHHHHHhcCChHHHHHHH
Q 006672 141 SLSLLS-LGRGLHCLIV----KSG--VEYDAFVRVHLADMYVQLGKTRGAFKVF 187 (636)
Q Consensus 141 ~~~~~~-~a~~~~~~~~----~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~ 187 (636)
....-+ .-..+...++ +.| ..-|+.....+...|.+.+++.+|+.-|
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 443211 1122222222 222 2344555566666666666666666665
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 636 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-04 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 9e-04 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 9e-04 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 0.003 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (99), Expect = 1e-04
Identities = 18/173 (10%), Positives = 56/173 (32%), Gaps = 14/173 (8%)
Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH---GRYEQAIQYFKKMMYSGT 393
L ++ + + A + ++ G + AI +++ +
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 268
Query: 394 EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY 453
+ + A G V A + ++ + N+ G
Sbjct: 269 H-FPDAYCNLANALKEKGSVAEAEDCYN--TALRLCPTHADSLNNLANIKREQGN----I 321
Query: 454 QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDP 506
+ + + K L++ P+ +++ L+++ +G+ ++ + +I+ P
Sbjct: 322 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM----HYKEAIRISP 370
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 39.3 bits (91), Expect = 9e-04
Identities = 16/138 (11%), Positives = 36/138 (26%), Gaps = 16/138 (11%)
Query: 450 SQG-YQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGW 508
S+G Q + + ++ PK S + +G ++ +SIK P +
Sbjct: 8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADE----QLMQSIKLFPEY 63
Query: 509 SYIEVN-GHVHRFEAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEALG 567
H+ + A+ + E +
Sbjct: 64 LPGASQLRHLVKAAQARKDFAQGAATAKVL----------GENEELTKSLVSFNLSMVSQ 113
Query: 568 CHSEKLALAFGLIQTTPG 585
+ + LA + +
Sbjct: 114 DYEQVSELALQIEELRQE 131
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (85), Expect = 9e-04
Identities = 11/107 (10%), Positives = 32/107 (29%), Gaps = 7/107 (6%)
Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435
G + A+Q + + + K + ++
Sbjct: 17 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSR 76
Query: 436 HTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYA 482
+ L+R ++ ++ ++ + L+ + +P L N+ A
Sbjct: 77 KAAALEFLNR-------FEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 36.5 bits (83), Expect = 0.003
Identities = 16/125 (12%), Positives = 45/125 (36%), Gaps = 8/125 (6%)
Query: 376 GRYEQAIQYFKKMM------YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429
G+Y QA+ + K++ Y +E + + L A + + + + +
Sbjct: 29 GKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCD 88
Query: 430 EPSVKHHTVVVNLLSRVG--QDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRW 487
+ L R +++++ F K+L++ P++ ++ + +
Sbjct: 89 KALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEH 148
Query: 488 KDVAR 492
+ R
Sbjct: 149 NERDR 153
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 636 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.54 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.54 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.15 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.12 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.09 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.06 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.02 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.01 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.96 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.93 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.84 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.84 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.59 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.57 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.51 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.5 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.49 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.46 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.45 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.42 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.38 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.27 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.26 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.26 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.23 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.2 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.09 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.06 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.03 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.02 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.99 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.98 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.96 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.94 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.94 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.89 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.83 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.82 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.76 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.75 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.74 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.72 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.71 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.63 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.53 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.33 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.32 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.27 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.25 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.12 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.78 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.78 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.7 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.19 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.73 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.73 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.25 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 91.24 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 89.93 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 88.12 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 84.54 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1e-20 Score=191.06 Aligned_cols=371 Identities=13% Similarity=0.126 Sum_probs=260.6
Q ss_pred HHHHhCCCchHHHHHHHHhHHCCCCCC-cccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 006672 102 RGLAENSHFQSCISHFVFMLRLSVRPN-RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKT 180 (636)
Q Consensus 102 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 180 (636)
..+.+.|++++|+..|+++.+. .|+ ...+..+...+...|++++|...++.+++.. +.+..++..+...|.+.|++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccc
Confidence 3444556666666666666553 243 3344455555666666666666666666653 33455666666666677777
Q ss_pred HHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC---CCChHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 006672 181 RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP---KKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257 (636)
Q Consensus 181 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 257 (636)
++|...+....... +.+...+..........+....+........ .................+....+...+....
T Consensus 84 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhh
Confidence 77776666655433 3334444444444444444443333332222 2334444455555666666666666665543
Q ss_pred C---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHH
Q 006672 258 E---KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334 (636)
Q Consensus 258 ~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 334 (636)
. .+...+..+...+...|++++|...+.+..+.. +-+...+..+...+...|++++|...+....+.. +.+...+
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 240 (388)
T d1w3ba_ 163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred ccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHH
Confidence 2 235677778888888899999998888887753 3356677788888888899999999888887765 5567777
Q ss_pred HHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcC
Q 006672 335 TALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411 (636)
Q Consensus 335 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 411 (636)
..+...|.+.|++++|...|++..+ .+..+|..+...+...|++++|++.++..... .+.+...+..+...+...|
T Consensus 241 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~ 319 (388)
T d1w3ba_ 241 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCC
Confidence 8888889999999999999987653 45678888999999999999999999988873 2334667888888899999
Q ss_pred cHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCC
Q 006672 412 QVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGR 486 (636)
Q Consensus 412 ~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~ 486 (636)
++++|.+.|++..+ +.|+ +..+..++.+|.+.|++++|.+.++++ ++++|+++.+|..|+.+|.+.|+
T Consensus 320 ~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a----l~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 320 NIEEAVRLYRKALE---VFPEFAAAHSNLASVLQQQGKLQEALMHYKEA----IRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CHHHHHHHHHHHTT---SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH----HTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999998874 4454 778889999999999999999998854 57899999999999999988775
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=2e-20 Score=188.95 Aligned_cols=353 Identities=11% Similarity=0.082 Sum_probs=291.9
Q ss_pred HHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCCh
Q 006672 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215 (636)
Q Consensus 136 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 215 (636)
...+.+.|++++|.+.++.+++.. +.++.++..+...|.+.|++++|...|++..+.. +.+..+|..+...|.+.|++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccc
Confidence 345667899999999999999874 4567888999999999999999999999887665 66788999999999999999
Q ss_pred HHHHHHHhhCCC---CChHHHHHHHHHHHhcCCHHHHHHHHhhC---CCCChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006672 216 RKAVELFGMMPK---KNVASWVSLIDGFMRKGDLKKAGELFEQM---PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289 (636)
Q Consensus 216 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 289 (636)
++|+..+..... .+..............+....+....... .......+..........+....+...+.+...
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhc
Confidence 999999988763 33344444444444444444443333322 233455566677778888999999998888876
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHH
Q 006672 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWT 366 (636)
Q Consensus 290 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~ 366 (636)
.. +-+...+..+...+...|+++.|...+...++.. |.+...+..+...|...|++++|...|++... .+...|.
T Consensus 164 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 241 (388)
T d1w3ba_ 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred cC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHH
Confidence 53 4456777888888899999999999999998765 56778899999999999999999999988764 4667888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh
Q 006672 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445 (636)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~ 445 (636)
.+...+.+.|++++|+..|++..+ ..|+ ..++..+..++...|++++|.+.++.... ..+.+...+..++.++.+
T Consensus 242 ~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~ 317 (388)
T d1w3ba_ 242 NLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccchhhhHHHHHHHH
Confidence 899999999999999999999998 6676 56888899999999999999999999875 245667889999999999
Q ss_pred cCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 446 VGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 446 ~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
.|++++|.+.+++ .++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 318 ~~~~~~A~~~~~~----al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 318 QGNIEEAVRLYRK----ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTCHHHHHHHHHH----HTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHH----HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999985 45789999999999999999999999999999999874
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=4.3e-13 Score=131.12 Aligned_cols=225 Identities=11% Similarity=-0.042 Sum_probs=144.8
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCH
Q 006672 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347 (636)
Q Consensus 268 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 347 (636)
...+.+.|++++|+..|+++.+.. +-+..++..+..++...|+++.|...+..+++.. |.+...+..++..|...|++
T Consensus 26 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 26 GLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccc
Confidence 334444445555555554444432 2233444444444444445555554444444433 23344444444455555555
Q ss_pred HHHHHHHhhccC--C----------------ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCC-CCCHHHHHHHHHHHH
Q 006672 348 EAASLVFGETKE--K----------------DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT-EPDGTVFLAILTACW 408 (636)
Q Consensus 348 ~~A~~~~~~~~~--~----------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~ 408 (636)
++|.+.++.... | +.......+..+...+...+|...|.+..+... .++...+..+...+.
T Consensus 104 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~ 183 (323)
T d1fcha_ 104 RQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN 183 (323)
T ss_dssp HHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH
T ss_pred cccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 555544444321 0 011111122334455677889999998887322 234567778888999
Q ss_pred hcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChh
Q 006672 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWK 488 (636)
Q Consensus 409 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~ 488 (636)
..|++++|...|++.... .+-+...|..++..|.+.|++++|.+.++++. +++|.++.+|..++.+|.+.|+++
T Consensus 184 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al----~~~p~~~~a~~~lg~~~~~~g~~~ 257 (323)
T d1fcha_ 184 LSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRAL----ELQPGYIRSRYNLGISCINLGAHR 257 (323)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHH----HHhhccHHHHHHHHHHHHHCCCHH
Confidence 999999999999998752 12347889999999999999999999998655 679999999999999999999999
Q ss_pred HHHHHHHHHHhC
Q 006672 489 DVARVRTLMQRR 500 (636)
Q Consensus 489 ~A~~~~~~m~~~ 500 (636)
+|++.|++..+.
T Consensus 258 ~A~~~~~~al~l 269 (323)
T d1fcha_ 258 EAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998873
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=3.5e-13 Score=131.79 Aligned_cols=262 Identities=12% Similarity=0.070 Sum_probs=173.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCC---CChHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCC
Q 006672 202 WNVLINGCSKIGYLRKAVELFGMMPK---KNVASWVSLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMINGFSQNG 275 (636)
Q Consensus 202 ~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 275 (636)
+-.....+.+.|++++|+..|+++.+ .+..+|..+..+|...|++++|...|++..+ .+...|..++..|...|
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccc
Confidence 33456667778888888888877652 3455677777777777777777777766542 23566777777777777
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHh
Q 006672 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355 (636)
Q Consensus 276 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 355 (636)
++++|.+.+++.... .|+............. ..+.......+..+.+.+...+|...|.
T Consensus 102 ~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 102 LQRQACEILRDWLRY--TPAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp CHHHHHHHHHHHHHT--STTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHh--ccchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHHHH
Confidence 777777777776653 2221110000000000 0000011111223334455677777776
Q ss_pred hccC-----CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCC
Q 006672 356 ETKE-----KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429 (636)
Q Consensus 356 ~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 429 (636)
+..+ .+...|..+...+...|++++|+..|++... ..|+ ..+|..+..++...|++++|.+.|++..+ +
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~ 235 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS--VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALE---L 235 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---H
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccc--cccccccchhhhhhcccccccchhHHHHHHHHHH---H
Confidence 6543 3456788888899999999999999999988 4566 56888888899999999999999999885 3
Q ss_pred CC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCch-----------hHHHHHHHHHHcCChhHHHHH
Q 006672 430 EP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPS-----------SYVLLSNIYAAEGRWKDVARV 493 (636)
Q Consensus 430 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~-----------~~~~l~~~~~~~g~~~~A~~~ 493 (636)
.| ++..|..++.+|.+.|++++|++.|+++. +++|++.. .|..+..++...|+.+.+...
T Consensus 236 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al----~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 236 QPGYIRSRYNLGISCINLGAHREAVEHFLEAL----NMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH----HHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHH----HhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 45 47788999999999999999999998665 44555443 456677777777877655433
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=4.3e-09 Score=103.03 Aligned_cols=262 Identities=13% Similarity=0.075 Sum_probs=167.6
Q ss_pred HHHHhcCCHHHHHHHHhhCC----CCC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHH
Q 006672 238 DGFMRKGDLKKAGELFEQMP----EKG----VVSWTAMINGFSQNGEAEKALAMFFQMLDA----GVRA-NDFTVVSALS 304 (636)
Q Consensus 238 ~~~~~~g~~~~A~~~~~~~~----~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~ 304 (636)
..+...|++++|..+|++.. ..+ ..+++.+...|...|++++|+..|++..+. +..+ ...++..+..
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 99 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 34455566666666555432 111 235566666777777777777777766542 1111 1123444555
Q ss_pred HHHhcCCcHHHHHHHHHHHH----cCCCC---chhHHHHHhhHHhhcCCHHHHHHHHhhccC--------CChhcHHHHH
Q 006672 305 ACAKVGALEAGVRVHNYISC----NDFGL---KGAIGTALVDMYAKCGNIEAASLVFGETKE--------KDLLTWTAMI 369 (636)
Q Consensus 305 ~~~~~~~~~~a~~~~~~~~~----~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li 369 (636)
.+...|++..+...+..... ...+. ....+..+...+...|+++.|...+..... ....++..+.
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 179 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 56667777777777666543 11111 123445666777888888888877766543 1223455566
Q ss_pred HHHHHcCChHHHHHHHHHHhHc----CCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC--ChhHHHHHHH
Q 006672 370 WGLAIHGRYEQAIQYFKKMMYS----GTEPD--GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP--SVKHHTVVVN 441 (636)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~l~~ 441 (636)
..+...++..++...+.+.... +..+. ...+..+...+...|++++|...++.......-.+ ....+..+..
T Consensus 180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 259 (366)
T d1hz4a_ 180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 259 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 6777888888888888776542 11111 12455556677888999999999988764221111 2345667888
Q ss_pred HHHhcCCchHHHHHHHHHHHHHh--ccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 442 LLSRVGQDSQGYQNSQNSFTKLL--QLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~~~~--~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
++...|++++|...++++....- ...|....++..++.+|...|++++|.+.+++..+
T Consensus 260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 260 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999997765443 33455667899999999999999999999998766
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=4.7e-08 Score=95.32 Aligned_cols=297 Identities=9% Similarity=-0.006 Sum_probs=152.9
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCCCCC-----hhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCC
Q 006672 171 ADMYVQLGKTRGAFKVFDETPEKNKSES-----VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGD 245 (636)
Q Consensus 171 i~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~ 245 (636)
...+...|++++|.+++++..+.. +.+ ..+++.+...|...|++++|+..|++...
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~-~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~------------------ 79 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQ------------------ 79 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC-cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------
Confidence 344556666666666666544322 111 22444455555566666666555544321
Q ss_pred HHHHHHHHhhCCCC--ChhhHHHHHHHHHhCCChHHHHHHHHHHHH----CCCCC--C-HHHHHHHHHHHHhcCCcHHHH
Q 006672 246 LKKAGELFEQMPEK--GVVSWTAMINGFSQNGEAEKALAMFFQMLD----AGVRA--N-DFTVVSALSACAKVGALEAGV 316 (636)
Q Consensus 246 ~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p--~-~~t~~~ll~~~~~~~~~~~a~ 316 (636)
+....... ...++..+...+...|++..+...+.+... .+..+ . ...+..+...+...|+++.+.
T Consensus 80 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~ 153 (366)
T d1hz4a_ 80 ------MARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE 153 (366)
T ss_dssp ------HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ------HHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhH
Confidence 11010000 012333444445555555555555544432 11111 1 122333344455555555555
Q ss_pred HHHHHHHHcC----CCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC-------C---ChhcHHHHHHHHHHcCChHHHH
Q 006672 317 RVHNYISCND----FGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-------K---DLLTWTAMIWGLAIHGRYEQAI 382 (636)
Q Consensus 317 ~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~---~~~~~~~li~~~~~~g~~~~A~ 382 (636)
..+....... .......+..+...+...++...+...+.+... . ....+..+...+...|+.++|.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 233 (366)
T d1hz4a_ 154 ASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAA 233 (366)
T ss_dssp HHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHH
Confidence 5555544321 111223334444455555555555554443221 1 1224555666677788888888
Q ss_pred HHHHHHhHcCCCCC---HHHHHHHHHHHHhcCcHHHHHHHHHHhHhh---cCCCCC-hhHHHHHHHHHHhcCCchHHHHH
Q 006672 383 QYFKKMMYSGTEPD---GTVFLAILTACWYSGQVKLALNFFDSMRFD---YFIEPS-VKHHTVVVNLLSRVGQDSQGYQN 455 (636)
Q Consensus 383 ~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 455 (636)
..+++........+ ...+..+..++...|++++|...++..... .+..|+ ...+..+..+|.+.|++++|.+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 313 (366)
T d1hz4a_ 234 NWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRV 313 (366)
T ss_dssp HHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 88887765322222 234555667788888888888888776521 233333 45677888888889999999988
Q ss_pred HHHHHHHHhccCC-----CCchhHHHHHHHHHHcCChhHHHH
Q 006672 456 SQNSFTKLLQLKP-----KHPSSYVLLSNIYAAEGRWKDVAR 492 (636)
Q Consensus 456 ~~~~~~~~~~l~p-----~~~~~~~~l~~~~~~~g~~~~A~~ 492 (636)
++++.+..-...- .....+..+...+...++.+++.+
T Consensus 314 l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 314 LLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 8877653322110 011233344455566666666654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=6.9e-09 Score=99.96 Aligned_cols=222 Identities=10% Similarity=0.099 Sum_probs=157.4
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHcCCCCchhHHHHHhhH
Q 006672 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG-ALEAGVRVHNYISCNDFGLKGAIGTALVDM 340 (636)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 340 (636)
..++.+...+.+.+.+++|+++++++++.+ +-+...|.....++...| ++++|...++.+++.. |-+..+|..+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 466777777888888888888888888753 335556666666777666 4788888888888765 5677888888888
Q ss_pred HhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcC-----
Q 006672 341 YAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSG----- 411 (636)
Q Consensus 341 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g----- 411 (636)
+.+.|++++|...++++.+ .+..+|+.+...+...|++++|++.++++++ +.|+ ...|+.+...+...+
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~--~~p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HCCccHHHHHHHHHHHHHccccchh
Confidence 8888888888888888775 4677888899999999999999999999988 5565 456666655554444
Q ss_pred -cHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCC--CCchhHHHHHHHHHHc--C
Q 006672 412 -QVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKP--KHPSSYVLLSNIYAAE--G 485 (636)
Q Consensus 412 -~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p--~~~~~~~~l~~~~~~~--g 485 (636)
.+++|.+.+....+ +.| +...|..+..++...| .+++.+.++.+. ++.| .++..+..++.+|... +
T Consensus 200 ~~~~~ai~~~~~al~---~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~----~l~~~~~~~~~~~~l~~~y~~~~~~ 271 (315)
T d2h6fa1 200 AVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRG-LSKYPNLLNQLL----DLQPSHSSPYLIAFLVDIYEDMLEN 271 (315)
T ss_dssp HHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHH----HHTTTCCCHHHHHHHHHHHHHHHHT
T ss_pred hhhHHhHHHHHHHHH---hCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHH----HhCCCcCCHHHHHHHHHHHHHHHhc
Confidence 36788888888775 344 4667777776665444 677877777554 3444 3455566677777543 3
Q ss_pred ChhHHHHHHH
Q 006672 486 RWKDVARVRT 495 (636)
Q Consensus 486 ~~~~A~~~~~ 495 (636)
+.+.+...++
T Consensus 272 ~~~~~~~~~~ 281 (315)
T d2h6fa1 272 QCDNKEDILN 281 (315)
T ss_dssp TCSSHHHHHH
T ss_pred CHHHHHHHHH
Confidence 4344443333
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=7.5e-09 Score=99.68 Aligned_cols=243 Identities=8% Similarity=-0.009 Sum_probs=137.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006672 233 WVSLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMINGFSQNG-EAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308 (636)
Q Consensus 233 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 308 (636)
++.+...+.+.+..++|+.+++++.+ .+..+|+.....+...| ++++|+..+++..+.. +-+..+|......+..
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~~~ 124 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEW 124 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHHHh
Confidence 33444444455555555555555432 22445666665555554 3566666666665542 2345556666666666
Q ss_pred cCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCC------hH
Q 006672 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGR------YE 379 (636)
Q Consensus 309 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~------~~ 379 (636)
.|++++|...+..+++.. +.+...|..+...+.+.|++++|...|+.+.+ .+..+|+.+...+...+. ++
T Consensus 125 l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~ 203 (315)
T d2h6fa1 125 LRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLE 203 (315)
T ss_dssp HTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHH
T ss_pred hccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhH
Confidence 666666666666666554 44566666666666666666666666666554 345566666555555444 56
Q ss_pred HHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhc--CCchHHHHHH
Q 006672 380 QAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV--GQDSQGYQNS 456 (636)
Q Consensus 380 ~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~--g~~~~A~~~~ 456 (636)
+|++.+.++++ ..|+ ...|..+...+...| .+++.+.++...+-.....+...+..+++.|... +..+.+...+
T Consensus 204 ~ai~~~~~al~--~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~ 280 (315)
T d2h6fa1 204 REVQYTLEMIK--LVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDIL 280 (315)
T ss_dssp HHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred HhHHHHHHHHH--hCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 78888888877 5565 556666655555444 4666777776654222222355666677776543 5555666666
Q ss_pred HHHHHH----HhccCCCCchhHHHHHHH
Q 006672 457 QNSFTK----LLQLKPKHPSSYVLLSNI 480 (636)
Q Consensus 457 ~~~~~~----~~~l~p~~~~~~~~l~~~ 480 (636)
+++.+- ..+.+|--...|.-++..
T Consensus 281 ~ka~~l~~~l~~~~DpiR~~yw~~~~~~ 308 (315)
T d2h6fa1 281 NKALELCEILAKEKDTIRKEYWRYIGRS 308 (315)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 544322 123455444455554443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.02 E-value=2.4e-08 Score=95.92 Aligned_cols=185 Identities=11% Similarity=0.049 Sum_probs=145.4
Q ss_pred CcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC--C-C-hhcHHHHHHHHHHcCChHHHHHHHH
Q 006672 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--K-D-LLTWTAMIWGLAIHGRYEQAIQYFK 386 (636)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~-~~~~~~li~~~~~~g~~~~A~~~~~ 386 (636)
..+.+..+++..++...+.+...+..++..+.+.|+.+.|..+|+++.+ | + ...|...+..+.+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 4578888999988766667778889999999999999999999998765 2 3 3478999999999999999999999
Q ss_pred HHhHcCCCCC-HHHHHHHHH-HHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHh
Q 006672 387 KMMYSGTEPD-GTVFLAILT-ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLL 464 (636)
Q Consensus 387 ~m~~~g~~p~-~~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 464 (636)
++++. .|+ ...|..... -+...|+.+.|..+|+.+... .+.++..|..+++.+.+.|++++|..+|+++.+..
T Consensus 159 ~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~- 233 (308)
T d2onda1 159 KARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG- 233 (308)
T ss_dssp HHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS-
T ss_pred HHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-
Confidence 99884 343 334433333 234568999999999999863 34557889999999999999999999999776431
Q ss_pred ccCCC-CchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 465 QLKPK-HPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 465 ~l~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
...|. ....|...+..-...|+.+.+..+.+++.+.
T Consensus 234 ~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 12222 2347888888888899999999999998764
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.01 E-value=8.4e-09 Score=96.30 Aligned_cols=218 Identities=12% Similarity=-0.003 Sum_probs=122.2
Q ss_pred hHHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHH
Q 006672 277 AEKALAMFFQMLDAGV-RA--NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353 (636)
Q Consensus 277 ~~~A~~l~~~m~~~g~-~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 353 (636)
.+.++.-+.+...... .+ ...++..+..++.+.|++++|...|+..++.. |.++.++..+..+|.+.|++++|...
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 4455555555554321 11 12344455556666777777777777776654 45666777777777777777777777
Q ss_pred HhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCC
Q 006672 354 FGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429 (636)
Q Consensus 354 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 429 (636)
|+++.+ .+..+|..+..+|...|++++|+..|++..+ ..|+ ......+..++...+..+....+...... .
T Consensus 94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 168 (259)
T d1xnfa_ 94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---S 168 (259)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---S
T ss_pred hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHh--hccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---c
Confidence 777654 3455677777778888888888888888777 3444 33333333344455555555555444442 2
Q ss_pred CCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 430 EPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 430 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
.+....+. ++..+........................|....+|..|+.+|...|++++|.+.+++..+..
T Consensus 169 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 169 DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred chhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 22222222 222221111111111111111112223345555677788888888888888888888887643
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.96 E-value=3e-08 Score=92.34 Aligned_cols=202 Identities=6% Similarity=-0.168 Sum_probs=126.4
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhH
Q 006672 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340 (636)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 340 (636)
..+|..+...|.+.|++++|+..|++.++.. +-+..++..+..++...|++++|...|+.+++.. |.+..++..+..+
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 114 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIA 114 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHH
Confidence 3466677777888888888888888877653 3356677777777888888888888888877765 4556677778888
Q ss_pred HhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHh----cCcH
Q 006672 341 YAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY----SGQV 413 (636)
Q Consensus 341 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~ 413 (636)
|...|++++|...|+...+ .+...+..+..++.+.+..+.+..+....... .++...+.. +..+.. .+..
T Consensus 115 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 115 LYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--DKEQWGWNI-VEFYLGNISEQTLM 191 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--CCCSTHHHH-HHHHTTSSCHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--chhhhhhhH-HHHHHHHHHHHHHH
Confidence 8888888888888877654 23333334444455556555555555555552 222222221 122211 1222
Q ss_pred HHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhH
Q 006672 414 KLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSY 474 (636)
Q Consensus 414 ~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~ 474 (636)
+.+...+..... ..|+ ...|..++..|...|++++|.+.|+++ +..+|++...|
T Consensus 192 ~~~~~~~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a----l~~~p~~~~~~ 246 (259)
T d1xnfa_ 192 ERLKADATDNTS---LAEHLSETNFYLGKYYLSLGDLDSATALFKLA----VANNVHNFVEH 246 (259)
T ss_dssp HHHHHHCCSHHH---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH----HTTCCTTCHHH
T ss_pred HHHHHHHHHhhh---cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHH----HHcCCCCHHHH
Confidence 232222222111 1222 456777899999999999999999855 47788775544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.93 E-value=7.5e-10 Score=108.18 Aligned_cols=230 Identities=7% Similarity=-0.042 Sum_probs=160.9
Q ss_pred hcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCC--ChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCcHHH
Q 006672 242 RKGDLKKAGELFEQMPE---KGVVSWTAMINGFSQNG--EAEKALAMFFQMLDAGVRANDFTVV-SALSACAKVGALEAG 315 (636)
Q Consensus 242 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a 315 (636)
..|++++|+..|+.... .+...|..+..++...+ ++++|+..+.++.+.. +++...+. .....+...+..+.|
T Consensus 85 ~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHH
Confidence 34456677777776542 34667777776666655 4788888888887753 33444443 344556667888888
Q ss_pred HHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCC
Q 006672 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395 (636)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 395 (636)
...++.+++.. +.+...++.+...+.+.|++++|...+....+-.... ......+...+..+++...+..... ..|
T Consensus 164 l~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~a~~~~~~~l~--~~~ 239 (334)
T d1dcea1 164 LAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE-LELVQNAFFTDPNDQSAWFYHRWLL--GRA 239 (334)
T ss_dssp HHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH-HHHHHHHHHHCSSCSHHHHHHHHHH--SCC
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHH-HHHHHHHHHhcchhHHHHHHHHHHH--hCc
Confidence 88888887765 5677888888888888888877766665544322111 1223334556777788888888877 334
Q ss_pred C-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchh
Q 006672 396 D-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSS 473 (636)
Q Consensus 396 ~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~ 473 (636)
+ ...+..+...+...|+.++|...+..... ..| +...|..++.+|.+.|++++|.+.++++ ++++|.+...
T Consensus 240 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~a----i~ldP~~~~y 312 (334)
T d1dcea1 240 EPLFRCELSVEKSTVLQSELESCKELQELEP---ENKWCLLTIILLMRALDPLLYEKETLQYFSTL----KAVDPMRAAY 312 (334)
T ss_dssp CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHH----HHHCGGGHHH
T ss_pred chhhHHHHHHHHHHHHhhHHHHHHHHHHHHh---hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH----HHHCcccHHH
Confidence 3 44555666677788999999999887764 334 4678888999999999999999999855 4779988888
Q ss_pred HHHHHHHHHH
Q 006672 474 YVLLSNIYAA 483 (636)
Q Consensus 474 ~~~l~~~~~~ 483 (636)
|..|...+.-
T Consensus 313 ~~~L~~~~~~ 322 (334)
T d1dcea1 313 LDDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhH
Confidence 8888777663
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.84 E-value=2e-07 Score=89.29 Aligned_cols=185 Identities=10% Similarity=0.034 Sum_probs=137.9
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHh
Q 006672 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355 (636)
Q Consensus 276 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 355 (636)
..++|..+|++..+...+.+...+...+......|+.+.+..+++.+++........+|..++..+.+.|+++.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45778888888876544445566677777777888888998888888875533334578888888888889999999998
Q ss_pred hccCCC---hhcHHHHHHH-HHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCC
Q 006672 356 ETKEKD---LLTWTAMIWG-LAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430 (636)
Q Consensus 356 ~~~~~~---~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 430 (636)
++.+.. ...|...... +...|+.+.|..+|+++.+. .|+ ...|...+..+...|+++.|+.+|++..+..+..
T Consensus 159 ~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 877533 2333333322 23358889999999999884 454 5688888888889999999999999988654455
Q ss_pred CC--hhHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 006672 431 PS--VKHHTVVVNLLSRVGQDSQGYQNSQNSFTK 462 (636)
Q Consensus 431 p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 462 (636)
|. ...|...+..-.+.|+.+.+.++++++.+.
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 54 457888888888899999999998877643
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.84 E-value=3.4e-09 Score=103.35 Aligned_cols=242 Identities=7% Similarity=-0.080 Sum_probs=174.8
Q ss_pred HHHHHHHHhhCCC--CC-hhhHHHHHHH----------HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--
Q 006672 246 LKKAGELFEQMPE--KG-VVSWTAMING----------FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG-- 310 (636)
Q Consensus 246 ~~~A~~~~~~~~~--~~-~~~~~~li~~----------~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~-- 310 (636)
.++|++++++... |+ ...|+..-.. +...|++++|+.+++...+.. +-+...+..+..++...+
T Consensus 45 ~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~ 123 (334)
T d1dcea1 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (334)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccc
Confidence 4566666665542 32 2344432222 334455789999999988753 345666666666666655
Q ss_pred CcHHHHHHHHHHHHcCCCCchhHH-HHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHH
Q 006672 311 ALEAGVRVHNYISCNDFGLKGAIG-TALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFK 386 (636)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 386 (636)
+++++...+..+++.. +.+...+ ......+...+..++|...++.+.+ .+..+|+.+...+.+.|++++|...++
T Consensus 124 ~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~ 202 (334)
T d1dcea1 124 NWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (334)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred cHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4789999999998875 4445554 4555778889999999999998886 467789999999999999998877776
Q ss_pred HHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc
Q 006672 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQL 466 (636)
Q Consensus 387 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l 466 (636)
+..+ +.|+.. .+...+...+..+++...+..... .-+++...+..++..+...|+.++|.+.+. +.++.
T Consensus 203 ~~~~--~~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~ 271 (334)
T d1dcea1 203 LPEN--VLLKEL---ELVQNAFFTDPNDQSAWFYHRWLL--GRAEPLFRCELSVEKSTVLQSELESCKELQ----ELEPE 271 (334)
T ss_dssp SCHH--HHHHHH---HHHHHHHHHCSSCSHHHHHHHHHH--SCCCCSSSCCCCHHHHHHHHHHHHHHHHHH----HHCTT
T ss_pred HhHH--hHHHHH---HHHHHHHHhcchhHHHHHHHHHHH--hCcchhhHHHHHHHHHHHHhhHHHHHHHHH----HHHhh
Confidence 6555 333322 223344556777778888777764 223445566777888888899999999887 44577
Q ss_pred CCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 467 KPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 467 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
+|.+..+|..++.+|...|++++|.+.+++..+.
T Consensus 272 ~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 272 NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999999884
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=2e-06 Score=75.53 Aligned_cols=126 Identities=7% Similarity=0.017 Sum_probs=102.4
Q ss_pred hhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHH
Q 006672 338 VDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLA 416 (636)
Q Consensus 338 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 416 (636)
...+...|+++.|.+.|.++.+++..+|..+..+|...|++++|++.|++.++ +.|+ ...|..+..++.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhccHHHH
Confidence 45667889999999999999888999999999999999999999999999998 6676 56888888999999999999
Q ss_pred HHHHHHhHhhcC-----------CC--CC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCC
Q 006672 417 LNFFDSMRFDYF-----------IE--PS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPK 469 (636)
Q Consensus 417 ~~~~~~m~~~~~-----------~~--p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~ 469 (636)
...|++...... .. +. ...+..+..++.+.|++++|.+.++++. ++.|.
T Consensus 90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~----~~~~~ 152 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT----SMKSE 152 (192)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----TTCCS
T ss_pred HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH----hcCCC
Confidence 999998764111 11 11 3566778889999999999999887544 55664
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=4.2e-07 Score=72.69 Aligned_cols=104 Identities=13% Similarity=0.024 Sum_probs=69.1
Q ss_pred HHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcC
Q 006672 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447 (636)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g 447 (636)
...+...|++++|+..|++.++ ..|+ ...|..+..++...|++++|+..++...+ . -+.++..|..++.+|...|
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~-~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD-L-KPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHh--cCCcchhhhhcccccccccccccccchhhhhHHH-h-ccchhhHHHHHHHHHHHcc
Confidence 4456667777777777777776 4454 44666667777777777777777777764 1 1334666777777777777
Q ss_pred CchHHHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 006672 448 QDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNI 480 (636)
Q Consensus 448 ~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~ 480 (636)
++++|+..++++ ++++|.++.++..+.++
T Consensus 86 ~~~~A~~~~~~a----~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 86 RFEEAKRTYEEG----LKHEANNPQLKEGLQNM 114 (117)
T ss_dssp CHHHHHHHHHHH----HTTCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHH----HHhCCCCHHHHHHHHHH
Confidence 777777777643 36677777666666554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=1.6e-06 Score=76.10 Aligned_cols=122 Identities=11% Similarity=0.042 Sum_probs=102.6
Q ss_pred HHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcC
Q 006672 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVG 447 (636)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g 447 (636)
...+...|++++|++.|+++ ..|+..+|..+..++...|++++|.+.|++.++ +.| .+..|..++.+|.+.|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~---ldp~~~~a~~~~g~~~~~~g 84 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN---RDKHLAVAYFQRGMLYYQTE 84 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH---HhhhhhhhHHHHHHHHHhhc
Confidence 55678899999999999875 456778888999999999999999999999986 345 4789999999999999
Q ss_pred CchHHHHHHHHHHHHHhccCCCC----------------chhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 448 QDSQGYQNSQNSFTKLLQLKPKH----------------PSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 448 ~~~~A~~~~~~~~~~~~~l~p~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
++++|.+.|+++... .|.+ ..++..++.+|...|++++|.+.+++..+..
T Consensus 85 ~~~~A~~~~~kAl~~----~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 85 KYDLAIKDLKEALIQ----LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp CHHHHHHHHHHHHHT----TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHh----CccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999999999977642 2222 2457789999999999999999999988754
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.50 E-value=4.9e-07 Score=80.22 Aligned_cols=88 Identities=14% Similarity=0.058 Sum_probs=41.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHH
Q 006672 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNL 442 (636)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~ 442 (636)
.......|.+.|++++|+..|++.++ +.|+ ...|..+..+|...|++++|+..|+...+ +.|+ +..|..++.+
T Consensus 7 l~~~Gn~~~~~g~~~~Ai~~~~kal~--~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~---l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 7 LKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFFLGQC 81 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH---hCCCcHHHHHHHHHH
Confidence 33444445555555555555555544 2333 33444444455555555555555554442 3332 4444445555
Q ss_pred HHhcCCchHHHHHHH
Q 006672 443 LSRVGQDSQGYQNSQ 457 (636)
Q Consensus 443 ~~~~g~~~~A~~~~~ 457 (636)
|.+.|++++|...|+
T Consensus 82 ~~~l~~~~~A~~~~~ 96 (201)
T d2c2la1 82 QLEMESYDEAIANLQ 96 (201)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHH
Confidence 555555555555444
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=1.1e-06 Score=74.72 Aligned_cols=118 Identities=10% Similarity=0.062 Sum_probs=95.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHH
Q 006672 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLS 444 (636)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~ 444 (636)
.....|.+.|++++|+..|++.++ +.|+ ...|..+..+|...|++++|.+.|+++.+ +.| +...|..++.+|.
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~---~~p~~~~a~~~~g~~~~ 89 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRAASNM 89 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHhhhccc--cchhhhhhhhhhHHHHHhccccchHHHHHHHHHH---HcccchHHHHHHHHHHH
Confidence 346678899999999999999998 5676 56888888899999999999999999985 345 4688999999999
Q ss_pred hcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHH--HcCChhHHHHH
Q 006672 445 RVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYA--AEGRWKDVARV 493 (636)
Q Consensus 445 ~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~--~~g~~~~A~~~ 493 (636)
..|++++|.+.++++. +++|.++..+..+..+.. ..+.+++|...
T Consensus 90 ~~g~~~eA~~~~~~a~----~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 90 ALGKFRAALRDYETVV----KVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HTTCHHHHHHHHHHHH----HHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999888554 678999988888776643 34456666544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=8.6e-07 Score=70.79 Aligned_cols=93 Identities=12% Similarity=0.092 Sum_probs=82.3
Q ss_pred HHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 006672 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYA 482 (636)
Q Consensus 403 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~ 482 (636)
-...+...|++++|..+|++.++. -+.++..|..++.+|.+.|++++|++.++++. +++|.++..|..++.+|.
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al----~~~p~~~~~~~~~g~~~~ 82 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV----DLKPDWGKGYSRKAAALE 82 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH----HHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHH----HhccchhhHHHHHHHHHH
Confidence 456788899999999999999862 23458889999999999999999999998555 679999999999999999
Q ss_pred HcCChhHHHHHHHHHHhCC
Q 006672 483 AEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 483 ~~g~~~~A~~~~~~m~~~g 501 (636)
..|++++|+..+++..+..
T Consensus 83 ~~~~~~~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 83 FLNRFEEAKRTYEEGLKHE 101 (117)
T ss_dssp HTTCHHHHHHHHHHHHTTC
T ss_pred HccCHHHHHHHHHHHHHhC
Confidence 9999999999999998754
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.45 E-value=2.7e-06 Score=80.31 Aligned_cols=204 Identities=11% Similarity=-0.038 Sum_probs=99.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHh
Q 006672 264 WTAMINGFSQNGEAEKALAMFFQMLDA----GVRAN-DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338 (636)
Q Consensus 264 ~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 338 (636)
|......|...|++++|.+.|.+..+. +-+++ ..+|..+..+|...|++++|.+.+....+.
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~------------- 106 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI------------- 106 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHH-------------
Confidence 334566677777777777777666541 11111 234455555555555555555555444321
Q ss_pred hHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHH-cCChHHHHHHHHHHhHc----CCCCC-HHHHHHHHHHHHhcCc
Q 006672 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAI-HGRYEQAIQYFKKMMYS----GTEPD-GTVFLAILTACWYSGQ 412 (636)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~ 412 (636)
+.+.|+...+ ..++..+...|.. .|++++|++.+++..+. +..+. ..++..+...+...|+
T Consensus 107 --~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~ 173 (290)
T d1qqea_ 107 --FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ 173 (290)
T ss_dssp --HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred --hhhcccchhH-----------HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcCh
Confidence 1111111111 1233444444433 46666776666665431 11111 2345666667777777
Q ss_pred HHHHHHHHHHhHhhcCCCCC-----hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCch-----hHHHHHHHHH
Q 006672 413 VKLALNFFDSMRFDYFIEPS-----VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPS-----SYVLLSNIYA 482 (636)
Q Consensus 413 ~~~a~~~~~~m~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~-----~~~~l~~~~~ 482 (636)
+++|.+.|+++.......+. ...+...+..+...|+++.|...+++ ..+++|..+. ....|+.+|.
T Consensus 174 y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~----~~~~~~~~~~sre~~~l~~l~~a~~ 249 (290)
T d1qqea_ 174 YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE----GQSEDPNFADSRESNFLKSLIDAVN 249 (290)
T ss_dssp HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHG----GGCC---------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHH----HHHhCCCccchHHHHHHHHHHHHHH
Confidence 77777777776542211111 12234445555666777777766663 3355553222 2344445544
Q ss_pred H--cCChhHHHHHHHHH
Q 006672 483 A--EGRWKDVARVRTLM 497 (636)
Q Consensus 483 ~--~g~~~~A~~~~~~m 497 (636)
. .+++++|+..|+.+
T Consensus 250 ~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 250 EGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp TTCTTTHHHHHHHHTTS
T ss_pred hcCHHHHHHHHHHHHHH
Confidence 4 23566777666543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.42 E-value=4.2e-07 Score=80.63 Aligned_cols=93 Identities=8% Similarity=-0.064 Sum_probs=44.5
Q ss_pred chhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHH
Q 006672 330 KGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILT 405 (636)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 405 (636)
+...+......|.+.|++++|...|++..+ .+...|+.+..+|.+.|++++|+..|++.++ +.|+ ..+|..+..
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHHHHH
Confidence 333344444445555555555555544332 2344455555555555555555555555544 3443 334444445
Q ss_pred HHHhcCcHHHHHHHHHHhH
Q 006672 406 ACWYSGQVKLALNFFDSMR 424 (636)
Q Consensus 406 a~~~~g~~~~a~~~~~~m~ 424 (636)
+|...|++++|...|+++.
T Consensus 81 ~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 5555555555555554443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.38 E-value=9.1e-07 Score=69.99 Aligned_cols=90 Identities=11% Similarity=-0.047 Sum_probs=76.6
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 006672 402 AILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNI 480 (636)
Q Consensus 402 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~ 480 (636)
.....+.+.|++++|...|++..+ ..| ++..|..++.++.+.|++++|+..++++ ++++|.++.+|..|+.+
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~a----l~~~p~~~~a~~~la~~ 93 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQ---KEPEREEAWRSLGLTQAENEKDGLAIIALNHA----RMLDPKDIAVHAALAVS 93 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH----HHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcc---cccccchhhhhhhhhhhhhhhHHHhhcccccc----cccccccccchHHHHHH
Confidence 345567788999999999999885 344 5788899999999999999999998854 57799999999999999
Q ss_pred HHHcCChhHHHHHHHHHH
Q 006672 481 YAAEGRWKDVARVRTLMQ 498 (636)
Q Consensus 481 ~~~~g~~~~A~~~~~~m~ 498 (636)
|...|++++|.+.+++..
T Consensus 94 y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 94 HTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHh
Confidence 999999999999998753
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=3.9e-06 Score=71.08 Aligned_cols=93 Identities=10% Similarity=0.026 Sum_probs=82.1
Q ss_pred HHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 006672 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYA 482 (636)
Q Consensus 403 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~ 482 (636)
....|.+.|++++|...|++..+ . -+.+...|..++.+|...|++++|.+.|+++. +++|.+..+|..++.+|.
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~-~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal----~~~p~~~~a~~~~g~~~~ 89 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIE-L-NPSNAIYYGNRSLAYLRTECYGYALGDATRAI----ELDKKYIKGYYRRAASNM 89 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH-H-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHhhhccc-c-chhhhhhhhhhHHHHHhccccchHHHHHHHHH----HHcccchHHHHHHHHHHH
Confidence 35578899999999999999986 2 13458899999999999999999999998554 779999999999999999
Q ss_pred HcCChhHHHHHHHHHHhCC
Q 006672 483 AEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 483 ~~g~~~~A~~~~~~m~~~g 501 (636)
..|++++|...+++..+..
T Consensus 90 ~~g~~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 90 ALGKFRAALRDYETVVKVK 108 (159)
T ss_dssp HTTCHHHHHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHHHHHcC
Confidence 9999999999999998843
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.26 E-value=2.6e-05 Score=73.28 Aligned_cols=197 Identities=11% Similarity=0.064 Sum_probs=116.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHC----CCC-CCHH
Q 006672 232 SWVSLIDGFMRKGDLKKAGELFEQMPE-----KG----VVSWTAMINGFSQNGEAEKALAMFFQMLDA----GVR-ANDF 297 (636)
Q Consensus 232 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~-p~~~ 297 (636)
.|......|...|++++|.+.|.+..+ .+ ..+|+.+...|.+.|++++|++.+++..+. |.. ....
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 118 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence 488999999999999999999987653 12 458999999999999999999999887652 110 0122
Q ss_pred HHHHHHHHHH-hcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcC
Q 006672 298 TVVSALSACA-KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG 376 (636)
Q Consensus 298 t~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 376 (636)
++..+...+. ..|+++.|.+.+....+.. -..++... -..+|..+...|...|
T Consensus 119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~---------------~~~~~~~~-----------~~~~~~~la~~~~~~g 172 (290)
T d1qqea_ 119 FKFELGEILENDLHDYAKAIDCYELAGEWY---------------AQDQSVAL-----------SNKCFIKCADLKALDG 172 (290)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHH---------------HHTTCHHH-----------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHH---------------HhcCchhh-----------hhhHHHHHHHHHHHcC
Confidence 3333333442 2455666655555443210 00000000 1224566677777788
Q ss_pred ChHHHHHHHHHHhHcCCCCC-----H-HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC------hhHHHHHHHHHH
Q 006672 377 RYEQAIQYFKKMMYSGTEPD-----G-TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS------VKHHTVVVNLLS 444 (636)
Q Consensus 377 ~~~~A~~~~~~m~~~g~~p~-----~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~------~~~~~~l~~~~~ 444 (636)
++++|+..|+++........ . ..+...+..+...|+++.|.+.+++..+ +.|. ......++.++.
T Consensus 173 ~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~---~~~~~~~sre~~~l~~l~~a~~ 249 (290)
T d1qqea_ 173 QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVN 249 (290)
T ss_dssp CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCccchHHHHHHHHHHHHHH
Confidence 88888888877766321111 0 1223334455667888888888887763 2222 123344555554
Q ss_pred h--cCCchHHHHHHH
Q 006672 445 R--VGQDSQGYQNSQ 457 (636)
Q Consensus 445 ~--~g~~~~A~~~~~ 457 (636)
. .+.+++|+..|+
T Consensus 250 ~~d~e~~~eai~~y~ 264 (290)
T d1qqea_ 250 EGDSEQLSEHCKEFD 264 (290)
T ss_dssp TTCTTTHHHHHHHHT
T ss_pred hcCHHHHHHHHHHHH
Confidence 4 244667766665
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=7e-06 Score=70.27 Aligned_cols=117 Identities=15% Similarity=0.012 Sum_probs=85.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhHcCC-----CC---------CHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-
Q 006672 367 AMIWGLAIHGRYEQAIQYFKKMMYSGT-----EP---------DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP- 431 (636)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~m~~~g~-----~p---------~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p- 431 (636)
.....+.+.|++++|+..|++.++.-. .. -..+|..+..+|.+.|++++|+..++..++ +.|
T Consensus 18 ~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~---~~p~ 94 (170)
T d1p5qa1 18 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE---LDSN 94 (170)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhh---cccc
Confidence 344455556666666666665554200 00 013566677788899999999999999986 345
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHH
Q 006672 432 SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDV 490 (636)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A 490 (636)
++..|..++.+|...|++++|...|+++ ++++|+|+.+...+..+..+.+...+.
T Consensus 95 ~~~a~~~~g~~~~~~g~~~~A~~~~~~a----l~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 95 NEKGLSRRGEAHLAVNDFELARADFQKV----LQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH----HHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHhhhHHHHHHHHHHH----HHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6888999999999999999999999855 467999999999998887776655543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.23 E-value=0.00063 Score=62.27 Aligned_cols=113 Identities=12% Similarity=0.020 Sum_probs=66.8
Q ss_pred ChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh----cCC
Q 006672 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY----SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR----VGQ 448 (636)
Q Consensus 377 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~----~g~ 448 (636)
....+...+...... .+...+..+...+.. ..+...+..+++...+ . .++.....+...|.. ..+
T Consensus 125 ~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~-~---g~~~A~~~lg~~y~~g~~~~~d 197 (265)
T d1ouva_ 125 DFKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD-L---KDSPGCFNAGNMYHHGEGATKN 197 (265)
T ss_dssp CHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTCSSCCC
T ss_pred hhHHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhcccc-c---cccccccchhhhcccCcccccc
Confidence 344555555554442 233444444444443 3455666666665543 2 244555555555554 456
Q ss_pred chHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHH----cCChhHHHHHHHHHHhCCC
Q 006672 449 DSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAA----EGRWKDVARVRTLMQRRSI 502 (636)
Q Consensus 449 ~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~ 502 (636)
+++|...|+++.+. .++..+..|+.+|.. ..++++|.++|++..+.|.
T Consensus 198 ~~~A~~~~~~aa~~------g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 198 FKEALARYSKACEL------ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHHHT------TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhhhhHhhhhcc------cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 77888888766543 356677788888875 3367788888888877664
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=2.4e-06 Score=68.40 Aligned_cols=108 Identities=7% Similarity=-0.041 Sum_probs=81.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcC---cHHHHHHHHHHhHhhcCCCCC-hhHHHHHH
Q 006672 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSG---QVKLALNFFDSMRFDYFIEPS-VKHHTVVV 440 (636)
Q Consensus 366 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~ 440 (636)
..+++.+...+++++|.+.|++.+. ..|+ ..++..+..++.+.+ ++++|+.+++++.+ ....|+ ...+..++
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~--~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~-~~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP-KGSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT-TSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHh-ccCCchHHHHHHHHH
Confidence 4567788888999999999999998 5565 567778888887654 45579999998874 222222 34677899
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 006672 441 NLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNI 480 (636)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~ 480 (636)
.+|.+.|++++|.+.|+++. +++|++..+...+..+
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL----~~~P~~~~A~~l~~~I 115 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLL----QTEPQNNQAKELERLI 115 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHH----HHCTTCHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHH----HhCcCCHHHHHHHHHH
Confidence 99999999999999998554 6799888776665444
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.09 E-value=1.9e-05 Score=67.42 Aligned_cols=99 Identities=11% Similarity=0.012 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-------------hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Q 006672 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-------------VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQ 465 (636)
Q Consensus 399 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 465 (636)
.+......+...|++++|+..|++.+.-....+. ...|..+..+|.+.|++++|+..++++. +
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al----~ 90 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL----E 90 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----H
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhh----h
Confidence 3444556788999999999999988753332222 2457778899999999999999998554 6
Q ss_pred cCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 466 LKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 466 l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
++|.++.+|..++.+|...|++++|...+++..+..
T Consensus 91 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 91 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 799999999999999999999999999999998843
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.06 E-value=3.6e-05 Score=64.31 Aligned_cols=109 Identities=13% Similarity=-0.038 Sum_probs=59.9
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHhHcCC----CCC-----------HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcC
Q 006672 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGT----EPD-----------GTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428 (636)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~-----------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 428 (636)
.+......+.+.|++.+|+..|++++..-. .++ ..+|..+..+|.+.|++++|++.++...+
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~--- 95 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK--- 95 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccc---
Confidence 344455667777788888877777765210 011 12344455555556666666666665553
Q ss_pred CCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHH
Q 006672 429 IEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSN 479 (636)
Q Consensus 429 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~ 479 (636)
+.| ++..|..++.+|...|++++|...|+++ ++++|.|+.+...+..
T Consensus 96 ~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~a----l~l~P~n~~~~~~l~~ 143 (153)
T d2fbna1 96 IDKNNVKALYKLGVANMYFGFLEEAKENLYKA----ASLNPNNLDIRNSYEL 143 (153)
T ss_dssp HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH----HHHSTTCHHHHHHHHH
T ss_pred ccchhhhhhHHhHHHHHHcCCHHHHHHHHHHH----HHhCCCCHHHHHHHHH
Confidence 223 3555666666666666666666655533 3455655555554443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.03 E-value=6.3e-05 Score=62.75 Aligned_cols=98 Identities=4% Similarity=-0.021 Sum_probs=79.9
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC---C-----------hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Q 006672 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEP---S-----------VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQ 465 (636)
Q Consensus 400 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p---~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 465 (636)
+..-...+.+.|++++|...|+....-....+ + ...|..++.+|.+.|++++|++.++++ ++
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~a----l~ 95 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV----LK 95 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH----HH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcc----cc
Confidence 44445677889999999999998874222111 1 246778899999999999999999865 47
Q ss_pred cCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 466 LKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 466 l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
++|.++.+|..++.+|...|++++|...|++..+..
T Consensus 96 ~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 96 IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred ccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 799999999999999999999999999999998743
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.02 E-value=0.0014 Score=59.90 Aligned_cols=221 Identities=11% Similarity=-0.023 Sum_probs=132.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhCCCC-ChhhHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006672 230 VASWVSLIDGFMRKGDLKKAGELFEQMPEK-GVVSWTAMINGFSQ----NGEAEKALAMFFQMLDAGVRANDFTVVSALS 304 (636)
Q Consensus 230 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 304 (636)
+..+..|...+.+.+++++|.+.|++..+. +..++..|...|.. ..+...|...+......+ +......+..
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~~ 78 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGN 78 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcccc
Confidence 444555555555666666666666655432 34555555555554 456677777777666654 2222222222
Q ss_pred HHH----hcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHH----hhcCCHHHHHHHHhhccC-CChhcHHHHHHHHHH-
Q 006672 305 ACA----KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY----AKCGNIEAASLVFGETKE-KDLLTWTAMIWGLAI- 374 (636)
Q Consensus 305 ~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~- 374 (636)
.+. ...+.+.|...+....+.|... ....+...+ ........|...+..... .+...+..+...|..
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~a~~~g~~~---a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~ 155 (265)
T d1ouva_ 79 LYYSGQGVSQNTNKALQYYSKACDLKYAE---GCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAG 155 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccccccchhhHHHHHHHhhhhhhhhhh---HHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccC
Confidence 222 2345666777777666655221 112222222 224456666666665443 566777777777775
Q ss_pred ---cCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh--
Q 006672 375 ---HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY----SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR-- 445 (636)
Q Consensus 375 ---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~-- 445 (636)
..+...+...++...+.| +......+...+.. ..++++|..+|++..+ .| ++..+..|+.+|.+
T Consensus 156 ~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~-~g---~~~a~~~LG~~y~~G~ 228 (265)
T d1ouva_ 156 RGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE-LE---NGGGCFNLGAMQYNGE 228 (265)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHTTS
T ss_pred CCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhc-cc---CHHHHHHHHHHHHcCC
Confidence 355667777878777654 44555555544543 5689999999998875 33 45667778888875
Q ss_pred --cCCchHHHHHHHHHHHHH
Q 006672 446 --VGQDSQGYQNSQNSFTKL 463 (636)
Q Consensus 446 --~g~~~~A~~~~~~~~~~~ 463 (636)
..+.++|.+.|+++++.+
T Consensus 229 g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 229 GVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp SSSCCSTTHHHHHHHHHHHT
T ss_pred CCccCHHHHHHHHHHHHHCc
Confidence 347899999999887653
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.99 E-value=1.9e-05 Score=62.10 Aligned_cols=90 Identities=10% Similarity=0.082 Sum_probs=70.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHH
Q 006672 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNL 442 (636)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~ 442 (636)
+-.+...+.+.|++++|+..|++.++ ..|+ ...|..+..++.+.|++++|+..|++..+ +.| +...|..++..
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~a~~~la~~ 93 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARM---LDPKDIAVHAALAVS 93 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcc--cccccchhhhhhhhhhhhhhhHHHhhcccccccc---cccccccchHHHHHH
Confidence 34456677788888888888888888 5565 56788888888888888888888888875 344 47788888888
Q ss_pred HHhcCCchHHHHHHHHH
Q 006672 443 LSRVGQDSQGYQNSQNS 459 (636)
Q Consensus 443 ~~~~g~~~~A~~~~~~~ 459 (636)
|...|++++|.+.+++.
T Consensus 94 y~~~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 94 HTNEHNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 88888888888888754
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.98 E-value=2.9e-05 Score=66.24 Aligned_cols=84 Identities=12% Similarity=0.012 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHH
Q 006672 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVL 476 (636)
Q Consensus 398 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~ 476 (636)
..+..+..++.+.|++++|+..++++++ +.| ++..|..++.+|.+.|++++|.+.|+++. +++|+|..++..
T Consensus 78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~---~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al----~l~p~n~~~~~~ 150 (169)
T d1ihga1 78 SCVLNIGACKLKMSDWQGAVDSCLEALE---IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQ----EIAPEDKAIQAE 150 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTCHHHHHH
T ss_pred HHHHHHHHHHHhhcccchhhhhhhhhhh---hhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHH----HhCCCCHHHHHH
Confidence 3566677788888899999988888875 334 47788888888889999999988888554 678888888888
Q ss_pred HHHHHHHcCChh
Q 006672 477 LSNIYAAEGRWK 488 (636)
Q Consensus 477 l~~~~~~~g~~~ 488 (636)
|..++.+.....
T Consensus 151 l~~~~~~l~~~~ 162 (169)
T d1ihga1 151 LLKVKQKIKAQK 162 (169)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777665544333
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.96 E-value=0.0015 Score=61.32 Aligned_cols=276 Identities=8% Similarity=-0.025 Sum_probs=133.8
Q ss_pred CCCCHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCCCCCcchHHHHHHHHHh
Q 006672 27 NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAE 106 (636)
Q Consensus 27 ~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 106 (636)
+..+.......+...+.++.|..++..+. -+..++..|.+.+++..|.+++.+. .+..+|..+...+.+
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l~~ 81 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVD 81 (336)
T ss_dssp ----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHHHh
Confidence 34444445555555555777777776432 2556777777777777777776644 355577777777777
Q ss_pred CCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 006672 107 NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186 (636)
Q Consensus 107 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 186 (636)
.....-| .+.......+......++..+-..|.+++...+++..... -..+...++-++..|++.+. ++-.+.
T Consensus 82 ~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~kl~e~ 154 (336)
T d1b89a_ 82 GKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-QKMREH 154 (336)
T ss_dssp TTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-HHHHHH
T ss_pred CcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-HHHHHH
Confidence 6554432 1222223344455566777777777777777777665432 24455667777777777543 333333
Q ss_pred HhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHH
Q 006672 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266 (636)
Q Consensus 187 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 266 (636)
+.... +......++..|-+.+.++++.- .|.+.|+++.|..+.-.-+ +++.-...
T Consensus 155 l~~~s------~~y~~~k~~~~c~~~~l~~elv~------------------Ly~~~~~~~~A~~~~i~~~-~~~~~~~~ 209 (336)
T d1b89a_ 155 LELFW------SRVNIPKVLRAAEQAHLWAELVF------------------LYDKYEEYDNAIITMMNHP-TDAWKEGQ 209 (336)
T ss_dssp HHHHS------TTSCHHHHHHHHHTTTCHHHHHH------------------HHHHTTCHHHHHHHHHHST-TTTCCHHH
T ss_pred HHhcc------ccCCHHHHHHHHHHcCChHHHHH------------------HHHhcCCHHHHHHHHHHcc-hhhhhHHH
Confidence 33221 12233344555555555554444 4455555555544432211 11112223
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH-------------HHHHHHhcCCcHHHHHHHHHHHHcCCCCchhH
Q 006672 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS-------------ALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333 (636)
Q Consensus 267 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 333 (636)
.+..+.+.++++...++.....+. .|+. .+. ++..+.+.+++......++.+...+ +..+
T Consensus 210 f~e~~~k~~N~e~~~~~i~~yL~~--~p~~--i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~v 282 (336)
T d1b89a_ 210 FKDIITKVANVELYYRAIQFYLEF--KPLL--LNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSV 282 (336)
T ss_dssp HHHHHHHCSSTHHHHHHHHHHHHH--CGGG--HHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHH
T ss_pred HHHHHHccCChHHHHHHHHHHHHc--CHHH--HHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHH
Confidence 344445555554444444333331 2221 122 3333344455555555555544433 2345
Q ss_pred HHHHhhHHhhcCCHHHHHH
Q 006672 334 GTALVDMYAKCGNIEAASL 352 (636)
Q Consensus 334 ~~~li~~~~~~g~~~~A~~ 352 (636)
.++|.+.|...++.+.-++
T Consensus 283 n~al~~lyie~~d~~~l~~ 301 (336)
T d1b89a_ 283 NESLNNLFITEEDYQALRT 301 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCcchhHHHHH
Confidence 6666666666666544333
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.94 E-value=4.1e-05 Score=60.93 Aligned_cols=96 Identities=14% Similarity=0.077 Sum_probs=66.5
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCH---HHHHHHHhhccCCC-----hhcHHHHHHH
Q 006672 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI---EAASLVFGETKEKD-----LLTWTAMIWG 371 (636)
Q Consensus 300 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~-----~~~~~~li~~ 371 (636)
..+++.+...+++++|.+.|+..++.+ |.++.++..+..++.+.++. ++|..+|+++...+ ..+|..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 356666777777888888888777766 56777777777777765544 35777777766422 2256667777
Q ss_pred HHHcCChHHHHHHHHHHhHcCCCCCHH
Q 006672 372 LAIHGRYEQAIQYFKKMMYSGTEPDGT 398 (636)
Q Consensus 372 ~~~~g~~~~A~~~~~~m~~~g~~p~~~ 398 (636)
|.+.|++++|++.|+++++ +.|+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~--~~P~~~ 106 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ--TEPQNN 106 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHhhhHHHHHHHHHHHH--hCcCCH
Confidence 7788888888888888877 667644
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.94 E-value=4.2e-05 Score=65.03 Aligned_cols=95 Identities=9% Similarity=-0.025 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHH
Q 006672 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLS 478 (636)
Q Consensus 399 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~ 478 (636)
.|..+..+|.+.|++++|+..++..... -+.+...|..++.+|...|++++|.+.|+++ ++++|+++.++..+.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~a----l~l~P~n~~~~~~l~ 139 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKV----LEVNPQNKAARLQIF 139 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH----HHSCTTCHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhc--ccchHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHhCCCCHHHHHHHH
Confidence 4556677888999999999999998852 2345788999999999999999999999854 578999999999988
Q ss_pred HHHHHcCChh-HHHHHHHHHHh
Q 006672 479 NIYAAEGRWK-DVARVRTLMQR 499 (636)
Q Consensus 479 ~~~~~~g~~~-~A~~~~~~m~~ 499 (636)
.+....++.. ...+++..|-+
T Consensus 140 ~~~~~~~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 140 MCQKKAKEHNERDRRTYANMFK 161 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHh
Confidence 8887766554 34555555543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.89 E-value=3e-05 Score=62.54 Aligned_cols=93 Identities=12% Similarity=0.149 Sum_probs=63.8
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCch-------h
Q 006672 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPS-------S 473 (636)
Q Consensus 401 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~-------~ 473 (636)
..+...+...|++++|++.|++.++ . -+.++..|..+..+|.+.|++++|.+.++++. +++|+++. +
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~-~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al----~l~~~~~~~~~~~a~~ 81 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKE-L-DPTNMTYITNQAAVYFEKGDYNKCRELCEKAI----EVGRENREDYRQIAKA 81 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH----HHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH-h-CcccHHHHHhHHHHHHHcCchHHHHHHHHHHH----HhCcccHHHHHHHHHH
Confidence 3455566777777777777777764 1 12346677777777888888888887777554 44555443 4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 474 YVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 474 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
|..++..+...+++++|.+.+++...
T Consensus 82 ~~~lg~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 82 YARIGNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 55667777788888888888887765
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.83 E-value=0.013 Score=54.81 Aligned_cols=135 Identities=13% Similarity=0.063 Sum_probs=74.6
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHH
Q 006672 162 YDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFM 241 (636)
Q Consensus 162 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~ 241 (636)
||..-.....+.|.+.|.++.|..+|..+. -|..++..+.+.++++.|.+++++. .+..+|..+...+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACV 80 (336)
T ss_dssp C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHHH
Confidence 444445556667777788888888877665 3666777777777777777777654 35557777777777
Q ss_pred hcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006672 242 RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309 (636)
Q Consensus 242 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 309 (636)
+......|.-+ ......+......++..|-..|.+++...++...... -.++...++.++..+++.
T Consensus 81 ~~~e~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 81 DGKEFRLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 146 (336)
T ss_dssp HTTCHHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred hCcHHHHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence 66665554222 1111223334456677777777777777777765533 244555666677666664
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.82 E-value=0.00027 Score=59.85 Aligned_cols=64 Identities=2% Similarity=-0.048 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 434 KHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
..|..+..+|.+.|++++|+..++++. +++|.+..+|..++.+|...|++++|...++++.+..
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al----~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKAL----GLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhh----hcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 356778889999999999999998654 6799999999999999999999999999999998743
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.76 E-value=8.6e-05 Score=63.59 Aligned_cols=122 Identities=16% Similarity=0.080 Sum_probs=83.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh
Q 006672 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445 (636)
Q Consensus 366 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~ 445 (636)
..........|++++|.+.|.+.+. +.+.... ......+.+...-..+.. .....+..++..+.+
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~--l~rG~~l--------~~~~~~~w~~~~r~~l~~-----~~~~a~~~la~~~~~ 79 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALR--EWRGPVL--------DDLRDFQFVEPFATALVE-----DKVLAHTAKAEAEIA 79 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT--TCCSSTT--------GGGTTSTTHHHHHHHHHH-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh--hCccccc--------ccCcchHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 3445567788999999999998887 3332210 000000011111111111 113566788999999
Q ss_pred cCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh-----CCCccCC
Q 006672 446 VGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR-----RSIKKDP 506 (636)
Q Consensus 446 ~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~ 506 (636)
.|++++|...++++ ++++|.+...|..++.+|...|++++|++.|+++.+ .|+.|.+
T Consensus 80 ~g~~~~Al~~~~~a----l~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~ 141 (179)
T d2ff4a2 80 CGRASAVIAELEAL----TFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 141 (179)
T ss_dssp TTCHHHHHHHHHHH----HHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred CCCchHHHHHHHHH----HHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence 99999999998855 477999999999999999999999999999998744 5776543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.75 E-value=0.00018 Score=57.77 Aligned_cols=95 Identities=8% Similarity=-0.023 Sum_probs=74.2
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-----hhHHH
Q 006672 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-----VKHHT 437 (636)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~ 437 (636)
.+..+...|.+.|++++|+..|++.++ +.|+ ...+..+..+|...|++++|.+.++++++...-.+. ..+|.
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 345677788899999999999999988 5555 668888888999999999999999988742111111 24677
Q ss_pred HHHHHHHhcCCchHHHHHHHHHH
Q 006672 438 VVVNLLSRVGQDSQGYQNSQNSF 460 (636)
Q Consensus 438 ~l~~~~~~~g~~~~A~~~~~~~~ 460 (636)
.++..+...+++++|.+.++++.
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 88888999999999999998665
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.74 E-value=0.00014 Score=61.81 Aligned_cols=110 Identities=7% Similarity=0.026 Sum_probs=80.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHH
Q 006672 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLL 443 (636)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~ 443 (636)
+......+...|++++|+..|+++++. .+. ........+. ..+.| ....|..+..+|
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~--~~~----------~~~~~~~~~~----------~~~~~~~~~~~~nla~~~ 87 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRY--VEG----------SRAAAEDADG----------AKLQPVALSCVLNIGACK 87 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--HHH----------HHHHSCHHHH----------GGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--hhh----------hhhhhhhHHH----------HHhChhhHHHHHHHHHHH
Confidence 445566677788888888888877641 110 0000111100 01122 356778899999
Q ss_pred HhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 444 SRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
.+.|++++|+..++++ ++++|.++.+|..++.+|...|++++|...+++..+.
T Consensus 88 ~~~~~~~~Ai~~~~~a----l~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 88 LKMSDWQGAVDSCLEA----LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHTTCHHHHHHHHHHH----HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred Hhhcccchhhhhhhhh----hhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999854 5889999999999999999999999999999999884
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.72 E-value=3.1e-06 Score=86.50 Aligned_cols=115 Identities=11% Similarity=-0.036 Sum_probs=57.6
Q ss_pred CchhHHHHHhhHHhhcCCHHHHHHHHhhccCCC-hhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHH
Q 006672 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKD-LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTA 406 (636)
Q Consensus 329 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a 406 (636)
++...+..+...+.+.|+.++|...+.....++ ..++..+...+...|++++|+..|++..+ +.|+ ..+|+.+...
T Consensus 118 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~--l~P~~~~~~~~Lg~~ 195 (497)
T d1ya0a1 118 PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAIL 195 (497)
T ss_dssp -------------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHH
T ss_pred hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCchHHHHHHHHH
Confidence 344555666666667777777766665544432 23566666777777777777777777776 5565 3577777777
Q ss_pred HHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcC
Q 006672 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447 (636)
Q Consensus 407 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g 447 (636)
+...|+..+|...|.+... --+|-+..+..|..+|.+..
T Consensus 196 ~~~~~~~~~A~~~y~ral~--~~~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 196 ASSKGDHLTTIFYYCRSIA--VKFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHS--SSBCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHHhh
Confidence 7777777777777777663 22455666666666665543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.71 E-value=6.6e-05 Score=61.91 Aligned_cols=114 Identities=11% Similarity=0.036 Sum_probs=71.6
Q ss_pred HHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHh----------cCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHH
Q 006672 373 AIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWY----------SGQVKLALNFFDSMRFDYFIEP-SVKHHTVVV 440 (636)
Q Consensus 373 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~----------~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~ 440 (636)
-+.+.+++|+..|+...+ +.|+ ...+..+..+|.. .+.+++|+..|++..+ +.| +...|..++
T Consensus 8 ~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~---l~P~~~~a~~~lG 82 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIG 82 (145)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH---hcchhhHHHhhHH
Confidence 344556677777777766 4555 3355555555543 2345677777777764 344 366777777
Q ss_pred HHHHhcCC-----------chHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 006672 441 NLLSRVGQ-----------DSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502 (636)
Q Consensus 441 ~~~~~~g~-----------~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 502 (636)
.+|...|+ +++|.+.|+ +.++++|.+...+..|... ..|.+++.+..++|+
T Consensus 83 ~~y~~~g~~~~~~~~~~~~~~~A~~~~~----kal~l~P~~~~~~~~L~~~-------~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 83 NAYTSFAFLTPDETEAKHNFDLATQFFQ----QAVDEQPDNTHYLKSLEMT-------AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHH----HHHHHCTTCHHHHHHHHHH-------HTHHHHHHHHHHSSS
T ss_pred HHHHHcccchhhHHHHHHhHHHhhhhhh----cccccCCCHHHHHHHHHHH-------HHHHHHHHHHHHHhc
Confidence 77766543 455666555 5568899998877777665 356677777766664
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=3.4e-05 Score=78.54 Aligned_cols=132 Identities=10% Similarity=-0.030 Sum_probs=81.6
Q ss_pred cCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Q 006672 344 CGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF 420 (636)
Q Consensus 344 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 420 (636)
.+.++.|...+..... ++...|..+...+.+.|+.++|...+++... ..| ..++..+...+...|++++|...|
T Consensus 99 ~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~~-~~~~~~LG~l~~~~~~~~~A~~~y 175 (497)
T d1ya0a1 99 SGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS--YIC-QHCLVHLGDIARYRNQTSQAESYY 175 (497)
T ss_dssp HHHHHHHHHHHTC-------------------------------CCHHHH--HHH-HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhC--CCH-HHHHHHHHHHHHHcccHHHHHHHH
Confidence 4555666666555433 4566788888888899999999988877665 222 357777888999999999999999
Q ss_pred HHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcC
Q 006672 421 DSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEG 485 (636)
Q Consensus 421 ~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g 485 (636)
++..+ +.|+ ...|+.++.++...|+..+|...|.++ +.++|+.+.++..|+..|.+..
T Consensus 176 ~~A~~---l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ra----l~~~~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 176 RHAAQ---LVPSNGQPYNQLAILASSKGDHLTTIFYYCRS----IAVKFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHH---HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHH----HSSSBCCHHHHHHHHHHHHHHT
T ss_pred HHHHH---HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH----HhCCCCCHHHHHHHHHHHHHhh
Confidence 99985 4555 679999999999999999999999855 4788889999999988887654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.53 E-value=0.00074 Score=56.14 Aligned_cols=95 Identities=9% Similarity=-0.019 Sum_probs=64.2
Q ss_pred HHHhcCcHHHHHHHHHHhHhhcCCCCC----------hhHHHHHHHHHHhcCCchHHHHHHHHHHHHH---hccCCCC--
Q 006672 406 ACWYSGQVKLALNFFDSMRFDYFIEPS----------VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKL---LQLKPKH-- 470 (636)
Q Consensus 406 a~~~~g~~~~a~~~~~~m~~~~~~~p~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~l~p~~-- 470 (636)
.+...|++++|++.|++..+-..-.|+ ...|+.+..+|...|++++|.+.++++.+-. .+..|.+
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 344456666666666655532211121 3467788888889999999988888766432 2233322
Q ss_pred --chhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 471 --PSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 471 --~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
..+|..++.+|...|++++|...|++..+.
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 235788999999999999999999998763
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.33 E-value=0.0015 Score=55.56 Aligned_cols=74 Identities=20% Similarity=0.285 Sum_probs=59.3
Q ss_pred ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHh----hcCCCCChhH
Q 006672 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRF----DYFIEPSVKH 435 (636)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~ 435 (636)
....+..+...+...|++++|+..++++.+ ..|. ...|..++.++...|+.++|++.|+++.+ +.|+.|+..+
T Consensus 66 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 66 KVLAHTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 345677788888889999999999999888 5665 56888888999999999999988887743 4688888765
Q ss_pred H
Q 006672 436 H 436 (636)
Q Consensus 436 ~ 436 (636)
-
T Consensus 144 ~ 144 (179)
T d2ff4a2 144 R 144 (179)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.32 E-value=0.00061 Score=51.11 Aligned_cols=76 Identities=8% Similarity=0.023 Sum_probs=54.7
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHhHhhcC----CCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhH
Q 006672 400 FLAILTACWYSGQVKLALNFFDSMRFDYF----IEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSY 474 (636)
Q Consensus 400 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~ 474 (636)
+..+...+.+.|++++|...|++..+... ..++ ..++..++.+|.+.|++++|++.++++. +++|+++.++
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL----~l~P~~~~a~ 83 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL----ELDPEHQRAN 83 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHH----HhCcCCHHHH
Confidence 33556667777777777777777653211 1122 5678889999999999999999988554 6799998888
Q ss_pred HHHHH
Q 006672 475 VLLSN 479 (636)
Q Consensus 475 ~~l~~ 479 (636)
..+..
T Consensus 84 ~Nl~~ 88 (95)
T d1tjca_ 84 GNLKY 88 (95)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.27 E-value=0.001 Score=55.30 Aligned_cols=99 Identities=12% Similarity=0.107 Sum_probs=68.4
Q ss_pred cHHHH--HHHHHHcCChHHHHHHHHHHhHcCC-CCC----------HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhc---
Q 006672 364 TWTAM--IWGLAIHGRYEQAIQYFKKMMYSGT-EPD----------GTVFLAILTACWYSGQVKLALNFFDSMRFDY--- 427 (636)
Q Consensus 364 ~~~~l--i~~~~~~g~~~~A~~~~~~m~~~g~-~p~----------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~--- 427 (636)
+|..+ ...+.+.|++++|++.|++.++... .|+ ...|+.+..+|...|++++|...+++..+-.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 44544 3445567888888888888776210 111 2467778888889999999988888776311
Q ss_pred -CCCCC-----hhHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 006672 428 -FIEPS-----VKHHTVVVNLLSRVGQDSQGYQNSQNSFTK 462 (636)
Q Consensus 428 -~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 462 (636)
...++ ...|..++.+|...|++++|.+.|+++.+.
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12222 235677889999999999999999977654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.25 E-value=0.00018 Score=59.11 Aligned_cols=87 Identities=10% Similarity=-0.002 Sum_probs=68.4
Q ss_pred HHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCC----------chHHHHHHHHHHHHHhccCCCCchhHH
Q 006672 407 CWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQ----------DSQGYQNSQNSFTKLLQLKPKHPSSYV 475 (636)
Q Consensus 407 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~l~p~~~~~~~ 475 (636)
|.+.+.+++|++.|+...+ +.| ++..+..++.+|...++ +++|++.|+ +.++++|+++.+|.
T Consensus 7 ~~r~~~fe~A~~~~e~al~---~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~----kAl~l~P~~~~a~~ 79 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK---SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFE----EALLIDPKKDEAVW 79 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH----HHHHHCTTCHHHHH
T ss_pred HHHHccHHHHHHHHHHHHh---hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH----HHHHhcchhhHHHh
Confidence 4567789999999999986 345 57888889988875544 456666666 45588999999999
Q ss_pred HHHHHHHHcCC-----------hhHHHHHHHHHHhC
Q 006672 476 LLSNIYAAEGR-----------WKDVARVRTLMQRR 500 (636)
Q Consensus 476 ~l~~~~~~~g~-----------~~~A~~~~~~m~~~ 500 (636)
.++.+|...|+ +++|.+.|++..+.
T Consensus 80 ~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 80 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc
Confidence 99999988764 67888888888773
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.12 E-value=0.00028 Score=64.46 Aligned_cols=120 Identities=10% Similarity=0.111 Sum_probs=72.5
Q ss_pred HcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchH
Q 006672 374 IHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQ 451 (636)
Q Consensus 374 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 451 (636)
+.|++++|+..+++.++ ..|+ ...+..+...++..|++++|...++...+ +.|+ ...+..+..++...+..++
T Consensus 8 ~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp TTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhccccHH
Confidence 45777777777777777 5555 45677777777777888888777777764 3454 3344444444443333332
Q ss_pred HHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 452 GYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 452 A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
+..-.. ...+..+|++...+...+..+...|+.++|.+.++++.+..
T Consensus 83 a~~~~~---~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 83 FAQGAA---TAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp HTTSCC---CEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---hhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 221111 00111234444555566777888888888888888877643
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.78 E-value=0.0024 Score=57.98 Aligned_cols=115 Identities=10% Similarity=-0.018 Sum_probs=49.1
Q ss_pred cCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC--C-ChhcHHHHHHHHHHcCChHHHHHHH
Q 006672 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--K-DLLTWTAMIWGLAIHGRYEQAIQYF 385 (636)
Q Consensus 309 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~ 385 (636)
.|++++|...++..++.. |.+...+..|...|+..|++++|.+.|+...+ | +...+..+...+...+..+++..-.
T Consensus 9 ~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~ 87 (264)
T d1zbpa1 9 EGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGA 87 (264)
T ss_dssp TTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHh
Confidence 344444444444444443 44445555555555555555555555554443 1 1223333333332222222221111
Q ss_pred HHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHh
Q 006672 386 KKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRF 425 (636)
Q Consensus 386 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 425 (636)
...... ..|+ ...+......+...|+.++|.+.++++.+
T Consensus 88 ~~~~~~-~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 88 ATAKVL-GENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127 (264)
T ss_dssp CCEECC-CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhhcc-cCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 111110 1122 22333334455666777777777766654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.78 E-value=0.0048 Score=45.86 Aligned_cols=70 Identities=7% Similarity=-0.061 Sum_probs=55.6
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc---CCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 432 SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQL---KPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
+.+.+-.++..+.+.|++++|...++++.+..-.- .+....++..|+.+|.+.|++++|+..++++.+..
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 34445578889999999999999999887654221 12234679999999999999999999999998843
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.70 E-value=0.11 Score=40.96 Aligned_cols=112 Identities=11% Similarity=0.002 Sum_probs=80.4
Q ss_pred ChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh----cCCchHH
Q 006672 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR----VGQDSQG 452 (636)
Q Consensus 377 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 452 (636)
++++|+++|++..+.|.. .....+. .....+.++|.+++++..+ .| ++.....|..+|.. ..+.++|
T Consensus 8 d~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~-~g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACE-LN---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhc-cc---chhhhhhHHHhhhhccccchhhHHH
Confidence 577888888888776632 2222222 3345678899999988774 33 45556666766654 4567899
Q ss_pred HHHHHHHHHHHhccCCCCchhHHHHHHHHHH----cCChhHHHHHHHHHHhCCCc
Q 006672 453 YQNSQNSFTKLLQLKPKHPSSYVLLSNIYAA----EGRWKDVARVRTLMQRRSIK 503 (636)
Q Consensus 453 ~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~ 503 (636)
.++|+++.+. .++.+...|+.+|.. ..+.++|.+++++..+.|..
T Consensus 79 ~~~~~~aa~~------g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 79 AQYYSKACGL------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 127 (133)
T ss_dssp HHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhhhcc------CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence 9999987754 467788899999887 45788999999999988853
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.19 E-value=2.6 Score=40.44 Aligned_cols=349 Identities=8% Similarity=-0.010 Sum_probs=198.1
Q ss_pred HHHHHHhhcCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChH
Q 006672 67 TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146 (636)
Q Consensus 67 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 146 (636)
..-+..+++.++++.....+... +.++..-.....+....|+..+|...+...-..|.. . .+
T Consensus 76 ~~~l~~L~~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~----------------p~ 137 (450)
T d1qsaa1 76 SRFVNELARREDWRGLLAFSPEK-PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-Q----------------PN 137 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCSC-CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-C----------------CT
T ss_pred HHHHHHHHhccCHHHHHHhccCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-C----------------ch
Confidence 34456677888888877766542 334554556677788889999998888877665421 1 22
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC
Q 006672 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226 (636)
Q Consensus 147 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 226 (636)
....++..+.+.| ..+...+-.-+......|+...|..+...+. ..........+..... ...+........
T Consensus 138 ~c~~l~~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~----~~~~~~~~a~~~l~~~---p~~~~~~~~~~~ 209 (450)
T d1qsaa1 138 ACDKLFSVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMP----ADYQTIASAIISLANN---PNTVLTFARTTG 209 (450)
T ss_dssp HHHHHHHHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCC----GGGHHHHHHHHHHHHC---GGGHHHHHHHSC
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCC----hhHHHHHHHHHHHHhC---hHhHHHHHhcCC
Confidence 2334444444444 3344444445566677889999999888765 3334444444444433 233333333222
Q ss_pred CCChHHHHHHHHHHHh--cCCHHHHHHHHhhCCCCC---h----hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 006672 227 KKNVASWVSLIDGFMR--KGDLKKAGELFEQMPEKG---V----VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297 (636)
Q Consensus 227 ~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~---~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 297 (636)
.+......+..++.+ ..+.+.|...+....... . .....+.......+..+.+..++......+ .+..
T Consensus 210 -~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~ 286 (450)
T d1qsaa1 210 -ATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTS 286 (450)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHH
T ss_pred -CChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchH
Confidence 222222222333322 246777777776643211 1 112223334445666777877777766553 2333
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCC
Q 006672 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGR 377 (636)
Q Consensus 298 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 377 (636)
...-.+......+++..+...+..+.... .....-.--+..++...|+.+.|...|....... +|-.++.+-.-...
T Consensus 287 ~~~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~--~fYG~LAa~~Lg~~ 363 (450)
T d1qsaa1 287 LIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQR--GFYPMVAAQRIGEE 363 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCC--ChHHHHHHHHcCCC
Confidence 33444455556678888877777664321 2233444556777888888888888888877542 34444433221111
Q ss_pred hHHHHHHHHHHhHcCCC--CC-HH---HHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchH
Q 006672 378 YEQAIQYFKKMMYSGTE--PD-GT---VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQ 451 (636)
Q Consensus 378 ~~~A~~~~~~m~~~g~~--p~-~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 451 (636)
+. +....+. +. .. .-..-+..+...|....|...|..+.. . .+..-...+..+..+.|.++.
T Consensus 364 ~~--------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~--~--~~~~~~~~la~lA~~~g~~~~ 431 (450)
T d1qsaa1 364 YE--------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVK--S--KSKTEQAQLARYAFNNQWWDL 431 (450)
T ss_dssp CC--------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT--T--CCHHHHHHHHHHHHHTTCHHH
T ss_pred CC--------CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHh--C--CCHHHHHHHHHHHHHCCChhH
Confidence 10 0000000 01 00 112234567788999999999988874 2 345566678888999999999
Q ss_pred HHHHHHHH
Q 006672 452 GYQNSQNS 459 (636)
Q Consensus 452 A~~~~~~~ 459 (636)
|+....++
T Consensus 432 aI~a~~~~ 439 (450)
T d1qsaa1 432 SVQATIAG 439 (450)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 98876644
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.73 E-value=0.4 Score=37.33 Aligned_cols=16 Identities=13% Similarity=0.358 Sum_probs=9.6
Q ss_pred ChHHHHHHHHHHHHCC
Q 006672 276 EAEKALAMFFQMLDAG 291 (636)
Q Consensus 276 ~~~~A~~l~~~m~~~g 291 (636)
++++|+.+|++..+.|
T Consensus 8 d~~~A~~~~~kaa~~g 23 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN 23 (133)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 4556666666665555
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.73 E-value=0.57 Score=35.61 Aligned_cols=27 Identities=11% Similarity=0.004 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 473 SYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 473 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
.+..|+-+|.+.|++++|.+.++++.+
T Consensus 75 ~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 75 CLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 444455555555555555555555544
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.25 E-value=1.7 Score=32.73 Aligned_cols=68 Identities=15% Similarity=0.126 Sum_probs=53.5
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCc
Q 006672 432 SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIK 503 (636)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 503 (636)
+.++...-++.+..+|+-+.-.++++.. ++-+..+|.....++++|.+-|...++-+++.++-++|++
T Consensus 85 ~se~vdlALd~lv~~~kkd~Ld~i~~~l----~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 85 LNEHVNKALDILVIQGKRDKLEEIGREI----LKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHH----C--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHH----HhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 3455666778888888877777776643 3445557889999999999999999999999999999975
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.24 E-value=1.6 Score=33.02 Aligned_cols=75 Identities=8% Similarity=-0.013 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHHHhc---CcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCC
Q 006672 395 PDGTVFLAILTACWYS---GQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH 470 (636)
Q Consensus 395 p~~~t~~~ll~a~~~~---g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~ 470 (636)
|...|--....++.++ .+.++|+.+++.+.+. + +.+ .+.+-.|.-+|.+.|++++|.+.++. +++++|.|
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~-~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~----~L~ieP~n 106 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-A-ESRRRECLYYLTIGCYKLGEYSMAKRYVDT----LFEHERNN 106 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-C-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHH----HHHHCTTC
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-C-chhHHHHHHHHHHHHHHHhhHHHHHHHHHH----HHccCCCc
Confidence 4444544555566554 4567899999988752 1 223 35666778889999999999999884 45779987
Q ss_pred chhHH
Q 006672 471 PSSYV 475 (636)
Q Consensus 471 ~~~~~ 475 (636)
..+..
T Consensus 107 ~qA~~ 111 (124)
T d2pqrb1 107 KQVGA 111 (124)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=89.93 E-value=3 Score=31.37 Aligned_cols=57 Identities=18% Similarity=0.071 Sum_probs=25.6
Q ss_pred HHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 006672 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK 462 (636)
Q Consensus 404 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 462 (636)
++.....|.-+.-.++++.+.+ +-+|+++..-.+..+|.+.|...+|.+++.++.++
T Consensus 93 Ld~lv~~~kkd~Ld~i~~~l~k--n~~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 93 LDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhccHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 3344444444444444444332 23444444444455555555555555555444443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=88.12 E-value=11 Score=35.64 Aligned_cols=270 Identities=12% Similarity=0.009 Sum_probs=150.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHh--CCChH
Q 006672 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ--NGEAE 278 (636)
Q Consensus 201 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~g~~~ 278 (636)
.+-.-+......|+...|..+...+...........+.....-..+... ..... .+......+..++.+ ..+.+
T Consensus 156 ~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~---~~~~~-~~~~~~~~~~~~l~rla~~d~~ 231 (450)
T d1qsaa1 156 AYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTF---ARTTG-ATDFTRQMAAVAFASVARQDAE 231 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHH---HHHSC-CCHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHH---HhcCC-CChhhhHHHHHHHHHHhccChh
Confidence 3334444555667777777777766655555556666555443333332 22222 222222222222222 34677
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHH
Q 006672 279 KALAMFFQMLDAGVRANDFTVVSALSAC----AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354 (636)
Q Consensus 279 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 354 (636)
.|..++....... ..+......+-... ...+..+.+..........+ .+......++......+++..+...|
T Consensus 232 ~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~ 308 (450)
T d1qsaa1 232 NARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWL 308 (450)
T ss_dssp HHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHH
Confidence 8888887776543 22222222222222 23455677777776665543 34444444555566778888888888
Q ss_pred hhccCCC---hhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC
Q 006672 355 GETKEKD---LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431 (636)
Q Consensus 355 ~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 431 (636)
+.+.... ....-=+..++...|+.+.|...|..... .+ +|...+.+ .+.|..-. +. ...+.+
T Consensus 309 ~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~---~fYG~LAa-~~Lg~~~~-------~~-~~~~~~ 373 (450)
T d1qsaa1 309 ARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QR---GFYPMVAA-QRIGEEYE-------LK-IDKAPQ 373 (450)
T ss_dssp HHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SC---SHHHHHHH-HHTTCCCC-------CC-CCCCCS
T ss_pred HhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CC---ChHHHHHH-HHcCCCCC-------CC-cCCCCc
Confidence 8887521 12223356778888999999988888764 13 35444433 22221100 00 000011
Q ss_pred C-hhH-----HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHH
Q 006672 432 S-VKH-----HTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQ 498 (636)
Q Consensus 432 ~-~~~-----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 498 (636)
+ ... -...+..+...|+..+|...+....+. .++.-...++....+.|.++.|+....+..
T Consensus 374 ~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~------~~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 374 NVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS------KSKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp CCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred cHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC------CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 0 000 123356677899999999988755432 255677788999999999999998776553
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.54 E-value=2.1 Score=30.51 Aligned_cols=63 Identities=13% Similarity=0.103 Sum_probs=48.2
Q ss_pred ChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHH
Q 006672 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441 (636)
Q Consensus 377 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 441 (636)
+.-++.+-+..+....+-|++....+.+.||.+.+++..|.++|+..+.+.+ ++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 4556677777777778889999999999999999999999999998875443 34556655543
|