Citrus Sinensis ID: 006705
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 634 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LIC3 | 628 | Putative pentatricopeptid | yes | no | 0.976 | 0.985 | 0.720 | 0.0 | |
| Q9LIQ7 | 633 | Pentatricopeptide repeat- | no | no | 0.941 | 0.943 | 0.417 | 1e-145 | |
| Q9STF3 | 657 | Pentatricopeptide repeat- | no | no | 0.951 | 0.917 | 0.398 | 1e-137 | |
| Q7Y211 | 890 | Pentatricopeptide repeat- | no | no | 0.946 | 0.674 | 0.405 | 1e-136 | |
| Q9LW32 | 659 | Pentatricopeptide repeat- | no | no | 0.946 | 0.910 | 0.397 | 1e-134 | |
| Q9SI53 | 630 | Pentatricopeptide repeat- | no | no | 0.958 | 0.965 | 0.393 | 1e-134 | |
| Q9ZUW3 | 868 | Pentatricopeptide repeat- | no | no | 0.894 | 0.653 | 0.392 | 1e-133 | |
| Q9LTV8 | 694 | Pentatricopeptide repeat- | no | no | 0.984 | 0.899 | 0.371 | 1e-131 | |
| Q9SVP7 | 1064 | Pentatricopeptide repeat- | no | no | 0.911 | 0.543 | 0.396 | 1e-130 | |
| Q9LZ19 | 635 | Pentatricopeptide repeat- | no | no | 0.897 | 0.896 | 0.401 | 1e-130 |
| >sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 947 bits (2447), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/627 (72%), Positives = 519/627 (82%), Gaps = 8/627 (1%)
Query: 16 FTQQQLTVPSFPPNPQN--------LKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNA 67
F +L SF +P N + LCSNG+L +AL+EMA LG EM F YD LLNA
Sbjct: 2 FNLMRLIHRSFSSSPTNYVLQTILPISQLCSNGRLQEALLEMAMLGPEMGFHGYDALLNA 61
Query: 68 CVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSW 127
C+++R LR GQRVHAHMIKT Y P YLRTRL++FY KC+CL DARK+ DEM E+NVVSW
Sbjct: 62 CLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSW 121
Query: 128 TAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIK 187
TAMIS YSQ HS EAL +F M+RSD +PNEFTFATVLTSC A G LGKQIH LI+K
Sbjct: 122 TAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVK 181
Query: 188 SNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIEL 247
N++SHI+VGSSLLDMYAKAG+I EAR +FECLPERDVVSCTAII+GYAQLGLDEEA+E+
Sbjct: 182 WNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEM 241
Query: 248 FRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSK 307
F +L EGM NYVTYAS+LTALSGLA L HGKQ H HVLR E+P Y VLQNSLIDMYSK
Sbjct: 242 FHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSK 301
Query: 308 CGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLA 367
CG+L+Y+RR+FDNM ERT ISWNAMLVGYSKHG+GREV+ELF LMR+E +VKPD+VT LA
Sbjct: 302 CGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLA 361
Query: 368 VLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPF 427
VLSGCSHG MED GL +F +V + G +P EHYGC+VDMLGRAGR+ EA EFIK MP
Sbjct: 362 VLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPS 421
Query: 428 EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRV 487
+PTA +LGSLLGACRVH +VDIGE VG+RL+EIEPENAGNYVILSNLYASAGRW DV V
Sbjct: 422 KPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNV 481
Query: 488 RELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDM 547
R +M +KAVTK+PGRSWI+ +Q LH FHA+DR+HP REE+ AK+K++S+K K+AGYVPD+
Sbjct: 482 RAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDL 541
Query: 548 SCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKV 607
SCVLYDVDEEQKEK+LLGHSEKLALTFGLI T EG PIRV KNLRICVDCHNFAK SKV
Sbjct: 542 SCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNFAKIFSKV 601
Query: 608 YGRKVSLRDKNRFHHIVEGTCSCGDYW 634
+ R+VSLRDKNRFH IV+G CSCGDYW
Sbjct: 602 FEREVSLRDKNRFHQIVDGICSCGDYW 628
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 517 bits (1332), Expect = e-145, Method: Compositional matrix adjust.
Identities = 254/609 (41%), Positives = 390/609 (64%), Gaps = 12/609 (1%)
Query: 26 FPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMI 85
FP N L+T ++ +E + + + RF Y+TLL C + L G+ VHAH++
Sbjct: 37 FPSNDLLLRTSSND-------LEGSYIPADRRF--YNTLLKKCTVFKLLIQGRIVHAHIL 87
Query: 86 KTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALN 145
++ +R + + L+ Y KC L +ARK+F++M +R+ V+WT +IS YSQ +AL
Sbjct: 88 QSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALL 147
Query: 146 LFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYA 205
F +MLR PNEFT ++V+ + A G Q+H +K F+S+++VGS+LLD+Y
Sbjct: 148 FFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYT 207
Query: 206 KAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYAS 265
+ G + +A+ VF+ L R+ VS A+I+G+A+ E+A+ELF+ + +G ++ +YAS
Sbjct: 208 RYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYAS 267
Query: 266 VLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT 325
+ A S L GK VH+++++ N+L+DMY+K GS+ +R++FD +++R
Sbjct: 268 LFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRD 327
Query: 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVF 385
V+SWN++L Y++HG G+E V F MR ++P+ +++L+VL+ CSH G+ D G +
Sbjct: 328 VVSWNSLLTAYAQHGFGKEAVWWFEEMRRVG-IRPNEISFLSVLTACSHSGLLDEGWH-Y 385
Query: 386 HEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHY 445
+E++ KDG PE HY VVD+LGRAG + AL FI+ MP EPTAAI +LL ACR+H
Sbjct: 386 YELMK-KDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHK 444
Query: 446 NVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWI 505
N ++G + + + E++P++ G +VIL N+YAS GRW D RVR+ MKE V K+P SW+
Sbjct: 445 NTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWV 504
Query: 506 ELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLG 565
E++ +H F A+D HP REE++ K +++ K KE GYVPD S V+ VD++++E L
Sbjct: 505 EIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQY 564
Query: 566 HSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVE 625
HSEK+AL F L+ TP G+ I + KN+R+C DCH K SKV GR++ +RD NRFHH +
Sbjct: 565 HSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKD 624
Query: 626 GTCSCGDYW 634
G CSC DYW
Sbjct: 625 GNCSCKDYW 633
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 488 bits (1256), Expect = e-137, Method: Compositional matrix adjust.
Identities = 244/612 (39%), Positives = 384/612 (62%), Gaps = 9/612 (1%)
Query: 29 NPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTC 88
N Q +++LC G+L +A I + + + Y+ L+ C ++ +L RVH H++
Sbjct: 49 NNQLIQSLCKEGKLKQA-IRVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILDNG 107
Query: 89 YRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFI 148
+L T+LI Y+ + ARK+FD+ R+R + W A+ A + H E L L+
Sbjct: 108 SDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYW 167
Query: 149 RMLRSDTEPNEFTFATVLTSCAGA----FGFELGKQIHSLIIKSNFESHIYVGSSLLDMY 204
+M R E + FT+ VL +C + GK+IH+ + + + SH+Y+ ++L+DMY
Sbjct: 168 KMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMY 227
Query: 205 AKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS--NYVT 262
A+ G + A VF +P R+VVS +A+I+ YA+ G EA+ FR++ E S N VT
Sbjct: 228 ARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVT 287
Query: 263 YASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS 322
SVL A + LAAL GK +H ++LR + S + + ++L+ MY +CG L +RVFD M
Sbjct: 288 MVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMH 347
Query: 323 ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGL 382
+R V+SWN+++ Y HG G++ +++F M N P VT+++VL CSH G+ + G
Sbjct: 348 DRDVVSWNSLISSYGVHGYGKKAIQIFEEMLA-NGASPTPVTFVSVLGACSHEGLVEEGK 406
Query: 383 AVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACR 442
+F E + G +P+IEHY C+VD+LGRA R+ EA + +++M EP + GSLLG+CR
Sbjct: 407 RLF-ETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCR 465
Query: 443 VHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGR 502
+H NV++ E +RL +EP+NAGNYV+L+++YA A W++V RV++L++ + + K PGR
Sbjct: 466 IHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGR 525
Query: 503 SWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKV 562
W+E+ + +++F + D +P+ E++ A + +L+ KE GY+P VLY+++ E+KE++
Sbjct: 526 CWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERI 585
Query: 563 LLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHH 622
+LGHSEKLAL FGLI T +G PIR+ KNLR+C DCH F KF+SK +++ +RD NRFH
Sbjct: 586 VLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHR 645
Query: 623 IVEGTCSCGDYW 634
G CSCGDYW
Sbjct: 646 FKNGVCSCGDYW 657
|
Required for the intergenic processing between chloroplast rsp7 and ndhB transcripts. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 484 bits (1247), Expect = e-136, Method: Compositional matrix adjust.
Identities = 251/619 (40%), Positives = 380/619 (61%), Gaps = 19/619 (3%)
Query: 33 LKTLCSNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKT-C 88
L +LC N QL +AL EM G+E ++L AC + LR G+ +HA+ +K
Sbjct: 274 LSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGS 333
Query: 89 YRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFI 148
++ + L+ Y C+ + R++FD M +R + W AMI+ YSQ H EAL LFI
Sbjct: 334 LDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFI 393
Query: 149 RMLRS-DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA 207
M S N T A V+ +C + F + IH ++K + +V ++L+DMY++
Sbjct: 394 GMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRL 453
Query: 208 GRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ-VEGMIS-------- 258
G+I A +F + +RD+V+ +I+GY E+A+ L K+Q +E +S
Sbjct: 454 GKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSL 513
Query: 259 --NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
N +T ++L + + L+AL GK++H++ ++ + + V + ++L+DMY+KCG L SR+
Sbjct: 514 KPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRK 573
Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
VFD + ++ VI+WN +++ Y HG G+E ++L +M + VKP+ VT+++V + CSH G
Sbjct: 574 VFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQG-VKPNEVTFISVFAACSHSG 632
Query: 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFE-PTAAILG 435
M D GL +F+ ++ G EP +HY CVVD+LGRAGR+ EA + + MP + A
Sbjct: 633 MVDEGLRIFY-VMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWS 691
Query: 436 SLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495
SLLGA R+H N++IGE Q L+++EP A +YV+L+N+Y+SAG W+ T VR MKE+
Sbjct: 692 SLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQG 751
Query: 496 VTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVD 555
V K+PG SWIE +H F A D SHP E+LS ++ L + ++ GYVPD SCVL++V+
Sbjct: 752 VRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVE 811
Query: 556 EEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLR 615
E++KE +L GHSEKLA+ FG++ T G IRV KNLR+C DCH KF+SK+ R++ LR
Sbjct: 812 EDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILR 871
Query: 616 DKNRFHHIVEGTCSCGDYW 634
D RFH GTCSCGDYW
Sbjct: 872 DVRRFHRFKNGTCSCGDYW 890
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 478 bits (1231), Expect = e-134, Method: Compositional matrix adjust.
Identities = 244/614 (39%), Positives = 374/614 (60%), Gaps = 14/614 (2%)
Query: 33 LKTLCSNGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
+ L +G +AL+ M L L + + AC + + G++ H Y
Sbjct: 48 IADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGY 107
Query: 90 RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
+ +++ + LIV Y+ C L DARK+FDE+ +RN+VSWT+MI Y ++ +A++LF
Sbjct: 108 QSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKD 167
Query: 150 MLRSDTEPNEFTF------ATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDM 203
+L + + ++ F +V+++C+ L + IHS +IK F+ + VG++LLD
Sbjct: 168 LLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDA 227
Query: 204 YAKAGR--IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS-NY 260
YAK G + AR +F+ + ++D VS +I+S YAQ G+ EA E+FR+L +++ N
Sbjct: 228 YAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNA 287
Query: 261 VTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDN 320
+T ++VL A+S AL GK +H V+R + V++ S+IDMY KCG + +R+ FD
Sbjct: 288 ITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDR 347
Query: 321 MSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDR 380
M + V SW AM+ GY HG + +ELF M + V+P+ +T+++VL+ CSH G+
Sbjct: 348 MKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSG-VRPNYITFVSVLAACSHAGLHVE 406
Query: 381 GLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGA 440
G F+ + + G EP +EHYGC+VD+LGRAG + +A + I+ M +P + I SLL A
Sbjct: 407 GWRWFNAM-KGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAA 465
Query: 441 CRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDP 500
CR+H NV++ E RL E++ N G Y++LS++YA AGRW+DV RVR +MK + + K P
Sbjct: 466 CRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPP 525
Query: 501 GRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKE 560
G S +EL+ +H F D HP RE++ + +L+ K EAGYV + S V +DVDEE+KE
Sbjct: 526 GFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKE 585
Query: 561 KVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRF 620
L HSEKLA+ FG++ T G+ + V+KNLR+C DCHN K +SK+ R+ +RD RF
Sbjct: 586 MTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRF 645
Query: 621 HHIVEGTCSCGDYW 634
HH +G CSCGDYW
Sbjct: 646 HHFKDGGCSCGDYW 659
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 478 bits (1231), Expect = e-134, Method: Compositional matrix adjust.
Identities = 246/625 (39%), Positives = 375/625 (60%), Gaps = 17/625 (2%)
Query: 13 SLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATL---GLEMRFEEYDTLLNACV 69
S + T Q L + F LC L +A+ M +L GL Y L+ C+
Sbjct: 20 SYSSTDQTLLLSEFT-------RLCYQRDLPRAMKAMDSLQSHGLWADSATYSELIKCCI 72
Query: 70 NQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTA 129
+ R + G + H+ +RP ++L LI Y K L+DA ++FD+M +RNV+SWT
Sbjct: 73 SNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTT 132
Query: 130 MISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSN 189
MISAYS+ +AL L + MLR + PN +T+++VL SC G + +H IIK
Sbjct: 133 MISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRM---LHCGIIKEG 189
Query: 190 FESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFR 249
ES ++V S+L+D++AK G +A VF+ + D + +II G+AQ + A+ELF+
Sbjct: 190 LESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFK 249
Query: 250 KLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309
+++ G I+ T SVL A +GLA L G Q H H+++++ ++L N+L+DMY KCG
Sbjct: 250 RMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYD--QDLILNNALVDMYCKCG 307
Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
SL + RVF+ M ER VI+W+ M+ G +++G +E ++LF M+ KP+ +T + VL
Sbjct: 308 SLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSG-TKPNYITIVGVL 366
Query: 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEP 429
CSH G+ + G F + G +P EHYGC++D+LG+AG++ +A++ + M EP
Sbjct: 367 FACSHAGLLEDGWYYFRSMKKLY-GIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEP 425
Query: 430 TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRE 489
A +LLGACRV N+ + E+ ++++ ++PE+AG Y +LSN+YA++ +W+ V +R
Sbjct: 426 DAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRT 485
Query: 490 LMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSC 549
M+++ + K+PG SWIE+++ +H F D SHP E+S K+ QL + GYVP+ +
Sbjct: 486 RMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNF 545
Query: 550 VLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYG 609
VL D++ EQ E L HSEKLAL FGL+ P IR+ KNLRIC DCH F K SK+
Sbjct: 546 VLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEI 605
Query: 610 RKVSLRDKNRFHHIVEGTCSCGDYW 634
R + +RD R+HH +G CSCGDYW
Sbjct: 606 RSIVIRDPIRYHHFQDGKCSCGDYW 630
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 477 bits (1228), Expect = e-133, Method: Compositional matrix adjust.
Identities = 227/578 (39%), Positives = 372/578 (64%), Gaps = 11/578 (1%)
Query: 61 YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
+ +++ C N + LR +++H ++K + +RT L+V Y+KC + DA ++F E+
Sbjct: 298 FASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIG 357
Query: 121 -ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
NVVSWTAMIS + Q EA++LF M R PNEFT++ +LT A
Sbjct: 358 CVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILT----ALPVISPS 413
Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
++H+ ++K+N+E VG++LLD Y K G++ EA VF + ++D+V+ +A+++GYAQ G
Sbjct: 414 EVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTG 473
Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGL-AALGHGKQVHSHVLRFEIPSYVVLQ 298
E AI++F +L G+ N T++S+L + A++G GKQ H ++ + S + +
Sbjct: 474 ETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVS 533
Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
++L+ MY+K G++ + VF E+ ++SWN+M+ GY++HG + +++F M++ KV
Sbjct: 534 SALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKR-KV 592
Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV-DCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
K D VT++ V + C+H G+ + G F +V DCK P EH C+VD+ RAG++ +
Sbjct: 593 KMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCK--IAPTKEHNSCMVDLYSRAGQLEK 650
Query: 418 ALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS 477
A++ I+NMP + I ++L ACRVH ++G ++++ ++PE++ YV+LSN+YA
Sbjct: 651 AMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAE 710
Query: 478 AGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVK 537
+G W++ +VR+LM E+ V K+PG SWIE+ ++F A DRSHP+++++ K++ LS +
Sbjct: 711 SGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTR 770
Query: 538 FKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDC 597
K+ GY PD S VL D+D+E KE VL HSE+LA+ FGLI TP+G+P+ +IKNLR+C DC
Sbjct: 771 LKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDC 830
Query: 598 HNFAKFVSKVYGRKVSLRDKNRFHHI-VEGTCSCGDYW 634
H K ++K+ R++ +RD NRFHH +G CSCGD+W
Sbjct: 831 HLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 469 bits (1206), Expect = e-131, Method: Compositional matrix adjust.
Identities = 236/635 (37%), Positives = 373/635 (58%), Gaps = 11/635 (1%)
Query: 8 SRAFSSLTFTQQ---QLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEE---Y 61
S +F +TF +Q L P P ++ N AL+ + + L + +
Sbjct: 63 SSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTF 122
Query: 62 DTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFD--EM 119
LL AC L+ G+ VHA + + + V+++ LI Y KC L AR +F+ +
Sbjct: 123 PHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPL 182
Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
ER +VSWTA++SAY+Q EAL +F +M + D +P+ +VL + + G+
Sbjct: 183 PERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGR 242
Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
IH+ ++K E + SL MYAK G++ A+ +F+ + +++ A+ISGYA+ G
Sbjct: 243 SIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNG 302
Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
EAI++F ++ + + + ++ S ++A + + +L + ++ +V R + V + +
Sbjct: 303 YAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISS 362
Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
+LIDM++KCGS+ +R VFD +R V+ W+AM+VGY HG RE + L+ M E V
Sbjct: 363 ALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAM-ERGGVH 421
Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
P+ VT+L +L C+H GM G F+ + D K P+ +HY CV+D+LGRAG + +A
Sbjct: 422 PNDVTFLGLLMACNHSGMVREGWWFFNRMADHK--INPQQQHYACVIDLLGRAGHLDQAY 479
Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
E IK MP +P + G+LL AC+ H +V++GE+ Q+L I+P N G+YV LSNLYA+A
Sbjct: 480 EVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAAR 539
Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
W+ V VR MKEK + KD G SW+E+ L F D+SHP EE+ +V+ + + K
Sbjct: 540 LWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLK 599
Query: 540 EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
E G+V + L+D+++E+ E+ L HSE++A+ +GLI TP+G P+R+ KNLR CV+CH
Sbjct: 600 EGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHA 659
Query: 600 FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
K +SK+ R++ +RD NRFHH +G CSCGDYW
Sbjct: 660 ATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 464 bits (1195), Expect = e-130, Method: Compositional matrix adjust.
Identities = 233/587 (39%), Positives = 358/587 (60%), Gaps = 9/587 (1%)
Query: 55 EMRFEE-------YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
+M+ EE Y ++L C+ L G+++H+ +IKT ++ Y+ + LI Y K
Sbjct: 480 QMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLG 539
Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
L A + ++VVSWT MI+ Y+Q +AL F +ML +E ++
Sbjct: 540 KLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVS 599
Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
+CAG + G+QIH+ S F S + ++L+ +Y++ G+I E+ FE D ++
Sbjct: 600 ACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIA 659
Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
A++SG+ Q G +EEA+ +F ++ EG+ +N T+ S + A S A + GKQVH+ +
Sbjct: 660 WNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVIT 719
Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
+ S + N+LI MY+KCGS++ + + F +S + +SWNA++ YSKHG G E ++
Sbjct: 720 KTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALD 779
Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
F+ M N V+P+ VT + VLS CSH G+ D+G+A F E ++ + G P+ EHY CVVD
Sbjct: 780 SFDQMIHSN-VRPNHVTLVGVLSACSHIGLVDKGIAYF-ESMNSEYGLSPKPEHYVCVVD 837
Query: 408 MLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGN 467
ML RAG + A EFI+ MP +P A + +LL AC VH N++IGEF L+E+EPE++
Sbjct: 838 MLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSAT 897
Query: 468 YVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREEL 527
YV+LSNLYA + +W+ R+ MKEK V K+PG+SWIE+ +H+F+ D++HP+ +E+
Sbjct: 898 YVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEI 957
Query: 528 SAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRV 587
+ L+ + E GYV D +L ++ EQK+ ++ HSEKLA++FGL+ P PI V
Sbjct: 958 HEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINV 1017
Query: 588 IKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
+KNLR+C DCH + KFVSKV R++ +RD RFHH G CSC DYW
Sbjct: 1018 MKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780 OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 464 bits (1195), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/571 (40%), Positives = 363/571 (63%), Gaps = 2/571 (0%)
Query: 64 LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
+L C + + H +I+ V L LI Y+KC + AR++FD M ER+
Sbjct: 67 ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 126
Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
+VSW MI Y++ EAL++F+ M + +EFT ++VL++C K++H
Sbjct: 127 LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHC 186
Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
L +K+ + ++YVG++LLD+YAK G I +A VFE + ++ V+ +++++GY Q EE
Sbjct: 187 LSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEE 246
Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
A+ L+R+ Q + N T +SV+ A S LAAL GKQ+H+ + + S V + +S +D
Sbjct: 247 ALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVD 306
Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
MY+KCGSL S +F + E+ + WN ++ G++KH +EV+ LF M+++ + P+ V
Sbjct: 307 MYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDG-MHPNEV 365
Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK 423
T+ ++LS C H G+ + G F +++ G P + HY C+VD+LGRAG + EA E IK
Sbjct: 366 TFSSLLSVCGHTGLVEEGRRFF-KLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIK 424
Query: 424 NMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWED 483
++PF+PTA+I GSLL +CRV+ N+++ E ++L E+EPENAGN+V+LSN+YA+ +WE+
Sbjct: 425 SIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEE 484
Query: 484 VTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGY 543
+ + R+L+++ V K G+SWI++ +HTF + HP E+ + + L +KF++ GY
Sbjct: 485 IAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGY 544
Query: 544 VPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKF 603
P + L+DV+ +KE++L+ HSEKLAL FGL+ PE +P+R++KNLRICVDCH F K
Sbjct: 545 KPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKA 604
Query: 604 VSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
S R + +RD NRFHH +G CSCGD+W
Sbjct: 605 ASMATRRFIIVRDVNRFHHFSDGHCSCGDFW 635
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 634 | ||||||
| 359481919 | 1053 | PREDICTED: putative pentatricopeptide re | 0.995 | 0.599 | 0.773 | 0.0 | |
| 449437930 | 666 | PREDICTED: putative pentatricopeptide re | 0.974 | 0.927 | 0.759 | 0.0 | |
| 449501934 | 638 | PREDICTED: putative pentatricopeptide re | 0.974 | 0.968 | 0.759 | 0.0 | |
| 297739711 | 784 | unnamed protein product [Vitis vinifera] | 0.905 | 0.732 | 0.798 | 0.0 | |
| 224137958 | 586 | predicted protein [Populus trichocarpa] | 0.924 | 1.0 | 0.793 | 0.0 | |
| 356498444 | 634 | PREDICTED: putative pentatricopeptide re | 0.973 | 0.973 | 0.744 | 0.0 | |
| 357440191 | 840 | Pentatricopeptide repeat protein [Medica | 0.968 | 0.730 | 0.724 | 0.0 | |
| 15231358 | 628 | pentatricopeptide repeat-containing prot | 0.976 | 0.985 | 0.720 | 0.0 | |
| 297829922 | 627 | pentatricopeptide repeat-containing prot | 0.976 | 0.987 | 0.717 | 0.0 | |
| 356537359 | 600 | PREDICTED: LOW QUALITY PROTEIN: putative | 0.946 | 1.0 | 0.707 | 0.0 |
| >gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1033 bits (2671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/632 (77%), Positives = 558/632 (88%), Gaps = 1/632 (0%)
Query: 3 RPKKQSRAFSSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYD 62
RPK+ + S+ F++Q++ + +FP N +LKTLCSN QL +AL+EM GLE+ F+ YD
Sbjct: 423 RPKQVLSSISN-PFSRQRILLSTFPANSPDLKTLCSNRQLKEALLEMGIQGLEVEFQGYD 481
Query: 63 TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
++L C++Q +R GQRVHAHMIKTCY PPVYLRTRLIV YNKC CL DAR++ DEM ER
Sbjct: 482 SVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPER 541
Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
NVVSWTAMIS YSQ+ ++ EAL+LF+ ML S T PNEFTFATVLTSC + GF+LG+QIH
Sbjct: 542 NVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIH 601
Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
SL+IK++FESHI+VGSSLLDMYAKAG+I EAR VF+ LPERDVVSCTAIISGYAQLGLDE
Sbjct: 602 SLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDE 661
Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
EA++LFR+LQ EGM SNYVTYASVLTALSGLAAL HG+QVHSHVLR ++P YVVLQNSLI
Sbjct: 662 EALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLI 721
Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
DMYSKCGSLTYSRR+FD+M ERTVISWNAMLVGYSKHG+GRE VELF LM+EENKVKPDS
Sbjct: 722 DMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDS 781
Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
VT+LAVLSGCSHGGMEDRGL +F+E+V+ KDGFEPEIEHYGCVVD+ GRAGRV EA EFI
Sbjct: 782 VTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFI 841
Query: 423 KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
K MPFEPTAAI GSLLGACRVH NV IGEFV +RL+EIE ENAGNYVILSNLYASAGRW+
Sbjct: 842 KKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWD 901
Query: 483 DVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG 542
DV VRELMKEKAV K+PGRSWIELDQ LHTFHASDRSHP +EE+ AKV++LS+K KEAG
Sbjct: 902 DVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKEAG 961
Query: 543 YVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAK 602
YVP++SCVLYDVD+EQKEK+L GHSEKLAL FGLI TP G P+R+IKNLRICVDCHNFAK
Sbjct: 962 YVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLICTPGGTPVRIIKNLRICVDCHNFAK 1021
Query: 603 FVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
F+S+VYGR+VSLRDKNRFHHIV GTCSCGDYW
Sbjct: 1022 FLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 1053
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1005 bits (2598), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/623 (75%), Positives = 546/623 (87%), Gaps = 5/623 (0%)
Query: 12 SSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQ 71
S TF++Q SF P+P NLKTLCS+GQL +AL++MA LG E++FE YDT+LN CV+Q
Sbjct: 49 SRYTFSRQ----ISFSPSP-NLKTLCSSGQLKEALLQMAILGREVKFEGYDTILNECVSQ 103
Query: 72 RTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMI 131
R +R GQRVH HMIKTCY P VYLRTRLIV YNKC+CL DAR+MFDEM ++NVVSWTAMI
Sbjct: 104 RAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMPQKNVVSWTAMI 163
Query: 132 SAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE 191
SAYSQ+ +FEALNLF+ MLRSDTEPN FTFAT+LTSC G+ GFE G+QIHS+ IK N+E
Sbjct: 164 SAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYE 223
Query: 192 SHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL 251
SH++VGSSLLDMYAK+GRI +A GVF CLPERDVV+CTAIISGYAQ+GLDEEA++LFR+L
Sbjct: 224 SHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQL 283
Query: 252 QVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSL 311
Q+EGM SN VTYASVLTALSGLAAL HGKQVHSHVLR SYVVL NSLIDMYSKCG++
Sbjct: 284 QIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNV 343
Query: 312 TYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG 371
Y+RR+FD+M ERT ISWNAMLVGYSKHGM REV+ELF LMREENKVKPDS+TYLAVLSG
Sbjct: 344 CYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSG 403
Query: 372 CSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTA 431
CSHG +ED GL +F+ +V+ KDG EP+I HYGCVVD+LGRAGRV EA +FIK MPF PTA
Sbjct: 404 CSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTA 463
Query: 432 AILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELM 491
AI GSLLG+CRVH +V+IG VGQ+L+E+EPENAGNYVILSNLYASAG+WED+ +R+LM
Sbjct: 464 AIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLM 523
Query: 492 KEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVL 551
+EKAVTK+PGRSW+ELDQI+HTFHASD +HP REE++ KVK+LS+KFKE GYVPD+SCVL
Sbjct: 524 QEKAVTKEPGRSWVELDQIVHTFHASDHTHPRREEVAKKVKELSIKFKEDGYVPDLSCVL 583
Query: 552 YDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRK 611
YDVDEEQKEKVLLGHSEKLAL FGLI TPEG IRVIKNLRICVDCH+FAKFVS++Y R
Sbjct: 584 YDVDEEQKEKVLLGHSEKLALAFGLIATPEGTTIRVIKNLRICVDCHSFAKFVSRLYART 643
Query: 612 VSLRDKNRFHHIVEGTCSCGDYW 634
V LRDKNRFH+IV G CSCGDYW
Sbjct: 644 VILRDKNRFHNIVGGVCSCGDYW 666
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1002 bits (2591), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/623 (75%), Positives = 545/623 (87%), Gaps = 5/623 (0%)
Query: 12 SSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQ 71
S TF++Q SF P+P NLKTLCS+GQL +AL++MA LG E++FE YD++LN CV+Q
Sbjct: 21 SRYTFSRQ----ISFSPSP-NLKTLCSSGQLKEALLQMAILGREVKFEGYDSILNECVSQ 75
Query: 72 RTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMI 131
R +R GQRVH HMIKTCY P VYLRTRLIV YNKC+CL DAR MFDEM +RNVVSWTAMI
Sbjct: 76 RAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMPQRNVVSWTAMI 135
Query: 132 SAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE 191
SAYSQ+ +FEALNLF+ MLRSDTEPN FTFAT+LTSC G+ GFE G+QIHS+ IK N+E
Sbjct: 136 SAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYE 195
Query: 192 SHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL 251
SH++VGSSLLDMYAK+GRI +A GVF CLPERDVV+CTAIISGYAQ+GLDEEA++LFR+L
Sbjct: 196 SHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQL 255
Query: 252 QVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSL 311
Q+EGM SN VTYASVLTALSGLAAL HGKQVHSHVLR SYVVL NSLIDMYSKCG++
Sbjct: 256 QIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNV 315
Query: 312 TYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG 371
Y+RR+FD+M ERT ISWNAMLVGYSKHGM REV+ELF LMREENKVKPDS+TYLAVLSG
Sbjct: 316 CYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSG 375
Query: 372 CSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTA 431
CSHG +ED GL +F+ +V+ KDG EP+I HYGCVVD+LGRAGRV EA +FIK MPF PTA
Sbjct: 376 CSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTA 435
Query: 432 AILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELM 491
AI GSLLG+CRVH +V+IG VGQ+L+E+EPENAGNYVILSNLYASAG+WED+ +R+LM
Sbjct: 436 AIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLM 495
Query: 492 KEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVL 551
+EKAVTK+PGRSW+ELDQI+HTFHASD +HP REE++ KVK+LS+KFKE GYVPD+SCVL
Sbjct: 496 QEKAVTKEPGRSWVELDQIVHTFHASDHTHPRREEVANKVKELSIKFKEDGYVPDLSCVL 555
Query: 552 YDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRK 611
YDVDEEQKEKVLLGHSEKLAL FGLI TPEG IRVIKNLRICVDCH+FAKFVS++Y R
Sbjct: 556 YDVDEEQKEKVLLGHSEKLALAFGLIATPEGTTIRVIKNLRICVDCHSFAKFVSRLYART 615
Query: 612 VSLRDKNRFHHIVEGTCSCGDYW 634
V LRDKNRFH+IV G CSCGDYW
Sbjct: 616 VILRDKNRFHNIVGGVCSCGDYW 638
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 994 bits (2570), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/586 (79%), Positives = 525/586 (89%)
Query: 49 MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
M GLE+ F+ YD++L C++Q +R GQRVHAHMIKTCY PPVYLRTRLIV YNKC C
Sbjct: 1 MGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRC 60
Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
L DAR++ DEM ERNVVSWTAMIS YSQ+ ++ EAL+LF+ ML S T PNEFTFATVLTS
Sbjct: 61 LGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTS 120
Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
C + GF+LG+QIHSL+IK++FESHI+VGSSLLDMYAKAG+I EAR VF+ LPERDVVSC
Sbjct: 121 CTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSC 180
Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
TAIISGYAQLGLDEEA++LFR+LQ EGM SNYVTYASVLTALSGLAAL HG+QVHSHVLR
Sbjct: 181 TAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLR 240
Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
++P YVVLQNSLIDMYSKCGSLTYSRR+FD+M ERTVISWNAMLVGYSKHG+GRE VEL
Sbjct: 241 AKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVEL 300
Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
F LM+EENKVKPDSVT+LAVLSGCSHGGMEDRGL +F+E+V+ KDGFEPEIEHYGCVVD+
Sbjct: 301 FKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDL 360
Query: 409 LGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468
GRAGRV EA EFIK MPFEPTAAI GSLLGACRVH NV IGEFV +RL+EIE ENAGNY
Sbjct: 361 FGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNY 420
Query: 469 VILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELS 528
VILSNLYASAGRW+DV VRELMKEKAV K+PGRSWIELDQ LHTFHASDRSHP +EE+
Sbjct: 421 VILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVF 480
Query: 529 AKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVI 588
AKV++LS+K KEAGYVP++SCVLYDVD+EQKEK+L GHSEKLAL FGLI TP G P+R+I
Sbjct: 481 AKVRELSIKIKEAGYVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLICTPGGTPVRII 540
Query: 589 KNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
KNLRICVDCHNFAKF+S+VYGR+VSLRDKNRFHHIV GTCSCGDYW
Sbjct: 541 KNLRICVDCHNFAKFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 586
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa] gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 976 bits (2523), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/586 (79%), Positives = 516/586 (88%)
Query: 49 MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
MA G E++F+ Y+ LLN CVN+R +R GQRVHAHMIKTCY PPVYL TRLI+ Y KCEC
Sbjct: 1 MAIQGPEIKFDGYNMLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCEC 60
Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
L AR +FDEMRERNVVSWTAMIS YSQ+ + EAL+LF++MLRSDTEPNEFTFATVL+S
Sbjct: 61 LGCARHVFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSS 120
Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
C G GFELG+QIHS I K N+E+HI+VGSSLLDMYAKAGRIHEARGVFECLPERDVVSC
Sbjct: 121 CTGFSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 180
Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
TAIISGYAQLGLDEEA+ELF +LQ EGM SNYVTYAS+LTALSGLAAL HGKQVHSHVLR
Sbjct: 181 TAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLR 240
Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
E+P YVVLQNSLIDMYSKCG+L Y+R++F+NM RTVISWNAMLVGYSKHG G EVV+L
Sbjct: 241 CELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKL 300
Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
F LMREENKVKPDSVT+LAVLSGCSHGG+ED+GL +F E+++ D E IEHYGCV+D+
Sbjct: 301 FKLMREENKVKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDL 360
Query: 409 LGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468
LGRAGRV EA E IK MPFEPTAAI GSLLGACRVH N +IGEFVG RL+EIEPENAGNY
Sbjct: 361 LGRAGRVEEAFELIKKMPFEPTAAIWGSLLGACRVHSNTNIGEFVGCRLLEIEPENAGNY 420
Query: 469 VILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELS 528
VILSNLYASAGRWEDV VRELM EKAV K+PGRSWIELDQ +HTF+ASDRSHP REE+
Sbjct: 421 VILSNLYASAGRWEDVRNVRELMMEKAVIKEPGRSWIELDQTIHTFYASDRSHPRREEVF 480
Query: 529 AKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVI 588
KV++L VKFKE+GYVPD SCVLYDVDEEQKEK+LLGHSEKLAL FGLI T EG P+RVI
Sbjct: 481 LKVRELLVKFKESGYVPDQSCVLYDVDEEQKEKILLGHSEKLALAFGLISTSEGVPLRVI 540
Query: 589 KNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
KNLRICVDCHNFAKFVSKVYGR+VS+RDKNRFHH+ G CSCGDYW
Sbjct: 541 KNLRICVDCHNFAKFVSKVYGRQVSIRDKNRFHHVAGGICSCGDYW 586
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 974 bits (2518), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/618 (74%), Positives = 534/618 (86%), Gaps = 1/618 (0%)
Query: 18 QQQLTVPSFPPNPQN-LKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRG 76
Q+ + +FP N + L + +L +AL+ MA GL+ F++Y+T+LN C+ +R +R
Sbjct: 17 QKPRLLSTFPSNSHHVLNIHIHDTRLREALLHMALRGLDTNFQDYNTVLNECLRKRAIRE 76
Query: 77 GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136
GQRVHAHMIKT Y P VYLRTRLIVFY KC+ L DAR +FD M ERNVVSWTAMISAYSQ
Sbjct: 77 GQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARHVFDVMPERNVVSWTAMISAYSQ 136
Query: 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV 196
+ ++ +AL+LF++MLRS TEPNEFTFATVLTSC G+ GF LG+QIHS IIK N+E+H+YV
Sbjct: 137 RGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQIHSHIIKLNYEAHVYV 196
Query: 197 GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
GSSLLDMYAK G+IHEARG+F+CLPERDVVSCTAIISGYAQLGLDEEA+ELFR+LQ EGM
Sbjct: 197 GSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQREGM 256
Query: 257 ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
SNYVTY SVLTALSGLAAL HGKQVH+H+LR E+PSYVVLQNSLIDMYSKCG+LTY+RR
Sbjct: 257 QSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARR 316
Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
+FD + ERTVISWNAMLVGYSKHG GREV+ELFNLM +ENKVKPDSVT LAVLSGCSHGG
Sbjct: 317 IFDTLHERTVISWNAMLVGYSKHGEGREVLELFNLMIDENKVKPDSVTVLAVLSGCSHGG 376
Query: 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGS 436
+ED+G+ +F+++ K +P+ +HYGCVVDMLGRAGRV A EF+K MPFEP+AAI G
Sbjct: 377 LEDKGMDIFYDMTSGKISVQPDSKHYGCVVDMLGRAGRVEAAFEFVKKMPFEPSAAIWGC 436
Query: 437 LLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496
LLGAC VH N+DIGEFVG +L++IEPENAGNYVILSNLYASAGRWEDV +R LM +KAV
Sbjct: 437 LLGACSVHSNLDIGEFVGHQLLQIEPENAGNYVILSNLYASAGRWEDVRSLRNLMLKKAV 496
Query: 497 TKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDE 556
TK+PGRSWIELDQ+LHTFHASD SHP REE+SAKV++LS +FKEAGYVPD+SCVL+DVDE
Sbjct: 497 TKEPGRSWIELDQVLHTFHASDCSHPRREEVSAKVQELSARFKEAGYVPDLSCVLHDVDE 556
Query: 557 EQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRD 616
EQKEK+LL HSEKLALTFGLI TPE PIRVIKNLRICVDCHNFAK+ SK+YGR+VSLRD
Sbjct: 557 EQKEKILLSHSEKLALTFGLIATPESVPIRVIKNLRICVDCHNFAKYTSKIYGREVSLRD 616
Query: 617 KNRFHHIVEGTCSCGDYW 634
KNRFH IV G CSCGDYW
Sbjct: 617 KNRFHRIVGGKCSCGDYW 634
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula] gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 953 bits (2464), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/635 (72%), Positives = 521/635 (82%), Gaps = 21/635 (3%)
Query: 21 LTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRV 80
LT FP N + L T ++ L + L++MA G M+FE Y+ +LN CVN+R R GQRV
Sbjct: 206 LTRHVFPSNSRTLSTFTTHIHLQQPLLQMALHGFNMKFENYNAILNECVNKRAFREGQRV 265
Query: 81 HAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHS 140
HAHMIKT Y P V+LRTRLIV Y KC+ L DA +FDEM ERNVVSWTAMISAYSQ+ ++
Sbjct: 266 HAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEMPERNVVSWTAMISAYSQRGYA 325
Query: 141 FEALNLFIRMLRSD---------------------TEPNEFTFATVLTSCAGAFGFELGK 179
+ALNLF ++ TEPNEFTFATVLTSC + GF LG+
Sbjct: 326 SQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEFTFATVLTSCTSSLGFILGR 385
Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
QIHSLIIK N+E H++VGSSLLDMYAK G+IHEAR VFECLPERDVVSCTAIISGYAQLG
Sbjct: 386 QIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECLPERDVVSCTAIISGYAQLG 445
Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
LDEEA+ELFR+LQ EGM SNYVTY VLTALSGLAAL GKQVH+HVLR EIPS+VVLQN
Sbjct: 446 LDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRSEIPSFVVLQN 505
Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
SLIDMYSKCG+LTYSRR+FD M ERTVISWNAMLVGYSKHG GREV++LF LMREE KVK
Sbjct: 506 SLIDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSKHGEGREVLKLFTLMREETKVK 565
Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
PDSVT LAVLSGCSHGG+ED+GL +F+++ K EP++EHYGCVVD+LGR+GRV EA
Sbjct: 566 PDSVTILAVLSGCSHGGLEDKGLNIFNDMSSGKIEVEPKMEHYGCVVDLLGRSGRVEEAF 625
Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
EFIK MPFEPTAAI GSLLGACRVH NVDIGEF GQ+L+EIEP NAGNYVILSNLYASAG
Sbjct: 626 EFIKKMPFEPTAAIWGSLLGACRVHSNVDIGEFAGQQLLEIEPGNAGNYVILSNLYASAG 685
Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
RWEDV+ +R+LM +K VTK+PGRS IELDQ+LHTFHASDRSHP REE+ KVK+LS FK
Sbjct: 686 RWEDVSSLRDLMLKKTVTKEPGRSSIELDQVLHTFHASDRSHPRREEICMKVKELSTSFK 745
Query: 540 EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
E GYVPD+SCVL+DVDEEQKEK+LLGHSEKLAL+FGLI +P PIRVIKNLRICVDCHN
Sbjct: 746 EVGYVPDLSCVLHDVDEEQKEKILLGHSEKLALSFGLIASPASVPIRVIKNLRICVDCHN 805
Query: 600 FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
FAK++SKVYGR+VSLRDKNRFH IV G CSC DYW
Sbjct: 806 FAKYISKVYGREVSLRDKNRFHRIVGGKCSCEDYW 840
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial; Flags: Precursor gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana] gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 947 bits (2447), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/627 (72%), Positives = 519/627 (82%), Gaps = 8/627 (1%)
Query: 16 FTQQQLTVPSFPPNPQN--------LKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNA 67
F +L SF +P N + LCSNG+L +AL+EMA LG EM F YD LLNA
Sbjct: 2 FNLMRLIHRSFSSSPTNYVLQTILPISQLCSNGRLQEALLEMAMLGPEMGFHGYDALLNA 61
Query: 68 CVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSW 127
C+++R LR GQRVHAHMIKT Y P YLRTRL++FY KC+CL DARK+ DEM E+NVVSW
Sbjct: 62 CLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSW 121
Query: 128 TAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIK 187
TAMIS YSQ HS EAL +F M+RSD +PNEFTFATVLTSC A G LGKQIH LI+K
Sbjct: 122 TAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVK 181
Query: 188 SNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIEL 247
N++SHI+VGSSLLDMYAKAG+I EAR +FECLPERDVVSCTAII+GYAQLGLDEEA+E+
Sbjct: 182 WNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEM 241
Query: 248 FRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSK 307
F +L EGM NYVTYAS+LTALSGLA L HGKQ H HVLR E+P Y VLQNSLIDMYSK
Sbjct: 242 FHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSK 301
Query: 308 CGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLA 367
CG+L+Y+RR+FDNM ERT ISWNAMLVGYSKHG+GREV+ELF LMR+E +VKPD+VT LA
Sbjct: 302 CGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLA 361
Query: 368 VLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPF 427
VLSGCSHG MED GL +F +V + G +P EHYGC+VDMLGRAGR+ EA EFIK MP
Sbjct: 362 VLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPS 421
Query: 428 EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRV 487
+PTA +LGSLLGACRVH +VDIGE VG+RL+EIEPENAGNYVILSNLYASAGRW DV V
Sbjct: 422 KPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNV 481
Query: 488 RELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDM 547
R +M +KAVTK+PGRSWI+ +Q LH FHA+DR+HP REE+ AK+K++S+K K+AGYVPD+
Sbjct: 482 RAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDL 541
Query: 548 SCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKV 607
SCVLYDVDEEQKEK+LLGHSEKLALTFGLI T EG PIRV KNLRICVDCHNFAK SKV
Sbjct: 542 SCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNFAKIFSKV 601
Query: 608 YGRKVSLRDKNRFHHIVEGTCSCGDYW 634
+ R+VSLRDKNRFH IV+G CSCGDYW
Sbjct: 602 FEREVSLRDKNRFHQIVDGICSCGDYW 628
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 947 bits (2447), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/626 (71%), Positives = 524/626 (83%), Gaps = 7/626 (1%)
Query: 16 FTQQQLTVPSFPPNPQN-------LKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNAC 68
F +L SF +P + + LCSNG+L +AL+EM LG E+ F YD LLNAC
Sbjct: 2 FNLMRLIHRSFSSSPNSVLQTFRPISQLCSNGRLQEALLEMVMLGPEIGFHCYDALLNAC 61
Query: 69 VNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWT 128
+++R LR GQRVHAHMIKT Y P YLRTRL++FY KC+CL DARK+ DEM E+NVVSWT
Sbjct: 62 LDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWT 121
Query: 129 AMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKS 188
AMIS YSQ HS EAL++F M+RSD +PNEFTFATVLTSC A G LGKQIH LI+K
Sbjct: 122 AMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIHGLIVKW 181
Query: 189 NFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELF 248
N++SHI+VGSSLLDMYAKAG+I EAR +FECLPERDVVSCTAII+GYAQLGLDEEA+E+F
Sbjct: 182 NYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMF 241
Query: 249 RKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKC 308
++LQ EGM NYVTYAS+LTALSGLA L HGKQ H HVLR E+P Y VLQNSLIDMYSKC
Sbjct: 242 QRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKC 301
Query: 309 GSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAV 368
G+L+Y++R+FDNM ERT ISWNAMLVGYSKHG+GREV+ELF LMR+E +VKPD+VT LAV
Sbjct: 302 GNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAV 361
Query: 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFE 428
LSGCSHG MED GL+++ +V + G +P+ EHYGC+VDMLGRAGR+ EA EFIK MP +
Sbjct: 362 LSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIKRMPSK 421
Query: 429 PTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVR 488
PTA +LGSLLGACRVH +VDIGE+VG RL+EIEPENAGNYVILSNLYASAGRWEDV VR
Sbjct: 422 PTAGVLGSLLGACRVHLSVDIGEYVGHRLIEIEPENAGNYVILSNLYASAGRWEDVNNVR 481
Query: 489 ELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMS 548
+M +KAVTK+PGRSWI+ +Q LH FHA+DR+HP REE+ AK+K++S+K K+AGYVPD+S
Sbjct: 482 AMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDIS 541
Query: 549 CVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVY 608
CVLYDVDEEQKEK+LLGHSEKLALTFGLI T EG PIRV KNLRICVDCHNFAK SKV+
Sbjct: 542 CVLYDVDEEQKEKMLLGHSEKLALTFGLITTGEGIPIRVFKNLRICVDCHNFAKIFSKVF 601
Query: 609 GRKVSLRDKNRFHHIVEGTCSCGDYW 634
R+VSLRDKNRFH IV+G CSCGDYW
Sbjct: 602 EREVSLRDKNRFHQIVKGICSCGDYW 627
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356537359|ref|XP_003537195.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 879 bits (2272), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/601 (70%), Positives = 499/601 (83%), Gaps = 1/601 (0%)
Query: 33 LKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPP 92
+ T + L +ALI+M GL+M ++Y+T+LN CV++R + GQRVHAH IKT Y P
Sbjct: 1 MSTHSHDTHLREALIQMTLXGLDMNLQDYNTVLNECVSKRAFKEGQRVHAHTIKTHYLPC 60
Query: 93 VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
VYL TRLIVFY KC+ L DAR + +EM ERNVVSWTAMISAYSQ+ ++ +AL++ +++LR
Sbjct: 61 VYLWTRLIVFYTKCDSLGDARHVLNEMPERNVVSWTAMISAYSQRGYASQALSILVQILR 120
Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
S TE NEFTFAT+ GF L + IHSLIIK NF++H+YVGSSLLDMYAK G+IHE
Sbjct: 121 SGTESNEFTFATMPYFMYRFLGFCLREAIHSLIIKLNFKAHVYVGSSLLDMYAKDGKIHE 180
Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
ARG+FECLPERDVVSCTAIISGYAQL LDEE +ELF +LQ EGM SNYVTY SVLTALSG
Sbjct: 181 ARGIFECLPERDVVSCTAIISGYAQLDLDEE-LELFLRLQREGMXSNYVTYTSVLTALSG 239
Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
LAAL HGKQVH+H+L E+PS+V+LQNSLIDMYSKCG+LTY+RR+FD M ERTVISWNAM
Sbjct: 240 LAALDHGKQVHNHLLCSEVPSFVILQNSLIDMYSKCGNLTYARRIFDTMRERTVISWNAM 299
Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
LVGYSKHG REV+ELFNLMR+ENKVKPDSVT LAVLSGCSHGG ED+G+ +F+++ K
Sbjct: 300 LVGYSKHGERREVLELFNLMRDENKVKPDSVTVLAVLSGCSHGGQEDKGMDIFYDMTSGK 359
Query: 393 DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEF 452
+P+ + YGCVVD+LGRAGRV EA EFIK +PFEP+AAI G LLGAC VH N+ IGEF
Sbjct: 360 ISVQPDTKRYGCVVDLLGRAGRVEEAFEFIKKIPFEPSAAICGCLLGACSVHSNLGIGEF 419
Query: 453 VGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILH 512
VG RL+E EPENAGNYVILSNLYASAGRWEDVT +R LM +KAVTK+PGRS IE+DQ+L
Sbjct: 420 VGHRLLEFEPENAGNYVILSNLYASAGRWEDVTSLRNLMLKKAVTKEPGRSLIEVDQVLQ 479
Query: 513 TFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLAL 572
TFH SD SHP REE+SAK ++L V+FKEAGY PD+SCVL+DVDEEQKEK+LL HSEKLAL
Sbjct: 480 TFHPSDCSHPRREEVSAKXQELLVRFKEAGYFPDLSCVLHDVDEEQKEKILLSHSEKLAL 539
Query: 573 TFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGD 632
+FGLI TPE I VIKNLRICVDCHNFAK++SK+Y R+VSLRDKN FH IV CSCGD
Sbjct: 540 SFGLIATPESVLICVIKNLRICVDCHNFAKYISKIYSREVSLRDKNWFHGIVGEKCSCGD 599
Query: 633 Y 633
Y
Sbjct: 600 Y 600
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 634 | ||||||
| TAIR|locus:2091546 | 628 | AT3G13770 [Arabidopsis thalian | 0.976 | 0.985 | 0.724 | 4.6e-247 | |
| TAIR|locus:2102852 | 657 | CRR2 "AT3G46790" [Arabidopsis | 0.951 | 0.917 | 0.397 | 4.2e-127 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.946 | 0.674 | 0.403 | 2.9e-126 | |
| TAIR|locus:4010713776 | 659 | AT3G26782 [Arabidopsis thalian | 0.941 | 0.905 | 0.399 | 3e-124 | |
| TAIR|locus:2056794 | 630 | REME1 "required for efficiency | 0.932 | 0.938 | 0.402 | 6.3e-124 | |
| TAIR|locus:2038603 | 868 | AT2G27610 "AT2G27610" [Arabido | 0.930 | 0.679 | 0.387 | 1e-123 | |
| TAIR|locus:2205425 | 743 | AT1G68930 "AT1G68930" [Arabido | 0.829 | 0.707 | 0.413 | 1.2e-123 | |
| TAIR|locus:2154389 | 646 | LPA66 "LOW PSII ACCUMULATION 6 | 0.697 | 0.684 | 0.448 | 1.1e-122 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.900 | 0.770 | 0.403 | 2.8e-121 | |
| TAIR|locus:2124137 | 871 | DOT4 "DEFECTIVELY ORGANIZED TR | 0.935 | 0.680 | 0.386 | 1.7e-120 |
| TAIR|locus:2091546 AT3G13770 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2380 (842.9 bits), Expect = 4.6e-247, P = 4.6e-247
Identities = 454/627 (72%), Positives = 521/627 (83%)
Query: 16 FTQQQLTVPSFPPNPQN--LKT------LCSNGQLTKALIEMATLGLEMRFEEYDTLLNA 67
F +L SF +P N L+T LCSNG+L +AL+EMA LG EM F YD LLNA
Sbjct: 2 FNLMRLIHRSFSSSPTNYVLQTILPISQLCSNGRLQEALLEMAMLGPEMGFHGYDALLNA 61
Query: 68 CVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSW 127
C+++R LR GQRVHAHMIKT Y P YLRTRL++FY KC+CL DARK+ DEM E+NVVSW
Sbjct: 62 CLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSW 121
Query: 128 TAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIK 187
TAMIS YSQ HS EAL +F M+RSD +PNEFTFATVLTSC A G LGKQIH LI+K
Sbjct: 122 TAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVK 181
Query: 188 SNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIEL 247
N++SHI+VGSSLLDMYAKAG+I EAR +FECLPERDVVSCTAII+GYAQLGLDEEA+E+
Sbjct: 182 WNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEM 241
Query: 248 FRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSK 307
F +L EGM NYVTYAS+LTALSGLA L HGKQ H HVLR E+P Y VLQNSLIDMYSK
Sbjct: 242 FHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSK 301
Query: 308 CGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLA 367
CG+L+Y+RR+FDNM ERT ISWNAMLVGYSKHG+GREV+ELF LMR+E +VKPD+VT LA
Sbjct: 302 CGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLA 361
Query: 368 VLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPF 427
VLSGCSHG MED GL +F +V + G +P EHYGC+VDMLGRAGR+ EA EFIK MP
Sbjct: 362 VLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPS 421
Query: 428 EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRV 487
+PTA +LGSLLGACRVH +VDIGE VG+RL+EIEPENAGNYVILSNLYASAGRW DV V
Sbjct: 422 KPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNV 481
Query: 488 RELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDM 547
R +M +KAVTK+PGRSWI+ +Q LH FHA+DR+HP REE+ AK+K++S+K K+AGYVPD+
Sbjct: 482 RAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDL 541
Query: 548 SCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKV 607
SCVLYDVDEEQKEK+LLGHSEKLALTFGLI T EG PIRV KNLRICVDCHNFAK SKV
Sbjct: 542 SCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNFAKIFSKV 601
Query: 608 YGRKVSLRDKNRFHHIVEGTCSCGDYW 634
+ R+VSLRDKNRFH IV+G CSCGDYW
Sbjct: 602 FEREVSLRDKNRFHQIVDGICSCGDYW 628
|
|
| TAIR|locus:2102852 CRR2 "AT3G46790" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1248 (444.4 bits), Expect = 4.2e-127, P = 4.2e-127
Identities = 243/612 (39%), Positives = 385/612 (62%)
Query: 29 NPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTC 88
N Q +++LC G+L +A+ ++ + + Y+ L+ C ++ +L RVH H++
Sbjct: 49 NNQLIQSLCKEGKLKQAIRVLSQESSPSQ-QTYELLILCCGHRSSLSDALRVHRHILDNG 107
Query: 89 YRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFI 148
+L T+LI Y+ + ARK+FD+ R+R + W A+ A + H E L L+
Sbjct: 108 SDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYW 167
Query: 149 RMLRSDTEPNEFTFATVLTSCAGAF----GFELGKQIHSLIIKSNFESHIYVGSSLLDMY 204
+M R E + FT+ VL +C + GK+IH+ + + + SH+Y+ ++L+DMY
Sbjct: 168 KMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMY 227
Query: 205 AKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS--NYVT 262
A+ G + A VF +P R+VVS +A+I+ YA+ G EA+ FR++ E S N VT
Sbjct: 228 ARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVT 287
Query: 263 YASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS 322
SVL A + LAAL GK +H ++LR + S + + ++L+ MY +CG L +RVFD M
Sbjct: 288 MVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMH 347
Query: 323 ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGL 382
+R V+SWN+++ Y HG G++ +++F M N P VT+++VL CSH G+ + G
Sbjct: 348 DRDVVSWNSLISSYGVHGYGKKAIQIFEEMLA-NGASPTPVTFVSVLGACSHEGLVEEGK 406
Query: 383 AVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACR 442
+F E + G +P+IEHY C+VD+LGRA R+ EA + +++M EP + GSLLG+CR
Sbjct: 407 RLF-ETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCR 465
Query: 443 VHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGR 502
+H NV++ E +RL +EP+NAGNYV+L+++YA A W++V RV++L++ + + K PGR
Sbjct: 466 IHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGR 525
Query: 503 SWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKV 562
W+E+ + +++F + D +P+ E++ A + +L+ KE GY+P VLY+++ E+KE++
Sbjct: 526 CWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERI 585
Query: 563 LLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHH 622
+LGHSEKLAL FGLI T +G PIR+ KNLR+C DCH F KF+SK +++ +RD NRFH
Sbjct: 586 VLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHR 645
Query: 623 IVEGTCSCGDYW 634
G CSCGDYW
Sbjct: 646 FKNGVCSCGDYW 657
|
|
| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1240 (441.6 bits), Expect = 2.9e-126, P = 2.9e-126
Identities = 250/619 (40%), Positives = 383/619 (61%)
Query: 33 LKTLCSNGQLTKALIEMATLGLE-MRFEEY--DTLLNACVNQRTLRGGQRVHAHMIKT-C 88
L +LC N QL +AL + + LE + +E+ ++L AC + LR G+ +HA+ +K
Sbjct: 274 LSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGS 333
Query: 89 YRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFI 148
++ + L+ Y C+ + R++FD M +R + W AMI+ YSQ H EAL LFI
Sbjct: 334 LDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFI 393
Query: 149 RMLRS-DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA 207
M S N T A V+ +C + F + IH ++K + +V ++L+DMY++
Sbjct: 394 GMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRL 453
Query: 208 GRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ-VEGMIS-------- 258
G+I A +F + +RD+V+ +I+GY E+A+ L K+Q +E +S
Sbjct: 454 GKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSL 513
Query: 259 --NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
N +T ++L + + L+AL GK++H++ ++ + + V + ++L+DMY+KCG L SR+
Sbjct: 514 KPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRK 573
Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
VFD + ++ VI+WN +++ Y HG G+E ++L +M + VKP+ VT+++V + CSH G
Sbjct: 574 VFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQG-VKPNEVTFISVFAACSHSG 632
Query: 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFE-PTAAILG 435
M D GL +F+ ++ G EP +HY CVVD+LGRAGR+ EA + + MP + A
Sbjct: 633 MVDEGLRIFY-VMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWS 691
Query: 436 SLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495
SLLGA R+H N++IGE Q L+++EP A +YV+L+N+Y+SAG W+ T VR MKE+
Sbjct: 692 SLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQG 751
Query: 496 VTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVD 555
V K+PG SWIE +H F A D SHP E+LS ++ L + ++ GYVPD SCVL++V+
Sbjct: 752 VRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVE 811
Query: 556 EEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLR 615
E++KE +L GHSEKLA+ FG++ T G IRV KNLR+C DCH KF+SK+ R++ LR
Sbjct: 812 EDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILR 871
Query: 616 DKNRFHHIVEGTCSCGDYW 634
D RFH GTCSCGDYW
Sbjct: 872 DVRRFHRFKNGTCSCGDYW 890
|
|
| TAIR|locus:4010713776 AT3G26782 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1221 (434.9 bits), Expect = 3.0e-124, P = 3.0e-124
Identities = 244/611 (39%), Positives = 373/611 (61%)
Query: 36 LCSNGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPP 92
L +G +AL+ M L L + + AC + + G++ H Y+
Sbjct: 51 LARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSD 110
Query: 93 VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
+++ + LIV Y+ C L DARK+FDE+ +RN+VSWT+MI Y ++ +A++LF +L
Sbjct: 111 IFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLV 170
Query: 153 SDTEPNEFTF------ATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAK 206
+ + ++ F +V+++C+ L + IHS +IK F+ + VG++LLD YAK
Sbjct: 171 DENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAK 230
Query: 207 AGR--IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS-NYVTY 263
G + AR +F+ + ++D VS +I+S YAQ G+ EA E+FR+L +++ N +T
Sbjct: 231 GGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITL 290
Query: 264 ASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE 323
++VL A+S AL GK +H V+R + V++ S+IDMY KCG + +R+ FD M
Sbjct: 291 STVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKN 350
Query: 324 RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLA 383
+ V SW AM+ GY HG + +ELF M + V+P+ +T+++VL+ CSH G+ G
Sbjct: 351 KNVRSWTAMIAGYGMHGHAAKALELFPAMIDSG-VRPNYITFVSVLAACSHAGLHVEGWR 409
Query: 384 VFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRV 443
F+ + + G EP +EHYGC+VD+LGRAG + +A + I+ M +P + I SLL ACR+
Sbjct: 410 WFNAMKG-RFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRI 468
Query: 444 HYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRS 503
H NV++ E RL E++ N G Y++LS++YA AGRW+DV RVR +MK + + K PG S
Sbjct: 469 HKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFS 528
Query: 504 WIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVL 563
+EL+ +H F D HP RE++ + +L+ K EAGYV + S V +DVDEE+KE L
Sbjct: 529 LLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTL 588
Query: 564 LGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHI 623
HSEKLA+ FG++ T G+ + V+KNLR+C DCHN K +SK+ R+ +RD RFHH
Sbjct: 589 RVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHF 648
Query: 624 VEGTCSCGDYW 634
+G CSCGDYW
Sbjct: 649 KDGGCSCGDYW 659
|
|
| TAIR|locus:2056794 REME1 "required for efficiency of mitochondrial editing 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1218 (433.8 bits), Expect = 6.3e-124, P = 6.3e-124
Identities = 243/603 (40%), Positives = 370/603 (61%)
Query: 36 LCSNGQLTKALIEMATL---GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPP 92
LC L +A+ M +L GL Y L+ C++ R + G + H+ +RP
Sbjct: 36 LCYQRDLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPM 95
Query: 93 VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ-KAHSFEALNLFIRML 151
++L LI Y K L+DA ++FD+M +RNV+SWT MISAYS+ K H +AL L + ML
Sbjct: 96 MFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQ-KALELLVLML 154
Query: 152 RSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIH 211
R + PN +T+++VL SC G + +H IIK ES ++V S+L+D++AK G
Sbjct: 155 RDNVRPNVYTYSSVLRSCNGMSDVRM---LHCGIIKEGLESDVFVRSALIDVFAKLGEPE 211
Query: 212 EARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
+A VF+ + D + +II G+AQ + A+ELF++++ G I+ T SVL A +
Sbjct: 212 DALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACT 271
Query: 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
GLA L G Q H H+++++ ++L N+L+DMY KCGSL + RVF+ M ER VI+W+
Sbjct: 272 GLALLELGMQAHVHIVKYD--QDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWST 329
Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
M+ G +++G +E ++LF M+ KP+ +T + VL CSH G+ + G F +
Sbjct: 330 MISGLAQNGYSQEALKLFERMKSSG-TKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKL 388
Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGE 451
G +P EHYGC++D+LG+AG++ +A++ + M EP A +LLGACRV N+ + E
Sbjct: 389 Y-GIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAE 447
Query: 452 FVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQIL 511
+ ++++ ++PE+AG Y +LSN+YA++ +W+ V +R M+++ + K+PG SWIE+++ +
Sbjct: 448 YAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQI 507
Query: 512 HTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLA 571
H F D SHP E+S K+ QL + GYVP+ + VL D++ EQ E L HSEKLA
Sbjct: 508 HAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLA 567
Query: 572 LTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCG 631
L FGL+ P IR+ KNLRIC DCH F K SK+ R + +RD R+HH +G CSCG
Sbjct: 568 LAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCG 627
Query: 632 DYW 634
DYW
Sbjct: 628 DYW 630
|
|
| TAIR|locus:2038603 AT2G27610 "AT2G27610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1216 (433.1 bits), Expect = 1.0e-123, P = 1.0e-123
Identities = 234/604 (38%), Positives = 384/604 (63%)
Query: 38 SNGQLTKALIEMATLGLE-MRFEE--YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVY 94
+NG +AL ++ L +R E + +++ C N + LR +++H ++K +
Sbjct: 272 ANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQN 331
Query: 95 LRTRLIVFYNKCECLSDARKMFDEMR-ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRS 153
+RT L+V Y+KC + DA ++F E+ NVVSWTAMIS + Q EA++LF M R
Sbjct: 332 IRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRK 391
Query: 154 DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEA 213
PNEFT++ +LT A ++H+ ++K+N+E VG++LLD Y K G++ EA
Sbjct: 392 GVRPNEFTYSVILT----ALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEA 447
Query: 214 RGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGL 273
VF + ++D+V+ +A+++GYAQ G E AI++F +L G+ N T++S+L +
Sbjct: 448 AKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAAT 507
Query: 274 -AALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
A++G GKQ H ++ + S + + ++L+ MY+K G++ + VF E+ ++SWN+M
Sbjct: 508 NASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSM 567
Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV-DC 391
+ GY++HG + +++F M++ KVK D VT++ V + C+H G+ + G F +V DC
Sbjct: 568 ISGYAQHGQAMKALDVFKEMKKR-KVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDC 626
Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGE 451
K P EH C+VD+ RAG++ +A++ I+NMP + I ++L ACRVH ++G
Sbjct: 627 K--IAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGR 684
Query: 452 FVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQIL 511
++++ ++PE++ YV+LSN+YA +G W++ +VR+LM E+ V K+PG SWIE+
Sbjct: 685 LAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKT 744
Query: 512 HTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLA 571
++F A DRSHP+++++ K++ LS + K+ GY PD S VL D+D+E KE VL HSE+LA
Sbjct: 745 YSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLA 804
Query: 572 LTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIV-EGTCSC 630
+ FGLI TP+G+P+ +IKNLR+C DCH K ++K+ R++ +RD NRFHH +G CSC
Sbjct: 805 IAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSC 864
Query: 631 GDYW 634
GD+W
Sbjct: 865 GDFW 868
|
|
| TAIR|locus:2205425 AT1G68930 "AT1G68930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1152 (410.6 bits), Expect = 1.2e-123, Sum P(2) = 1.2e-123
Identities = 219/529 (41%), Positives = 335/529 (63%)
Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
C + DA ++F M E++ VSW AMI +Q + EA+ F M + +++ F +V
Sbjct: 218 CGMIEDALQLFRGM-EKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSV 276
Query: 166 LTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDV 225
L +C G GKQIH+ II++NF+ HIYVGS+L+DMY K +H A+ VF+ + +++V
Sbjct: 277 LPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNV 336
Query: 226 VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSH 285
VS TA++ GY Q G EEA+++F +Q G+ ++ T ++A + +++L G Q H
Sbjct: 337 VSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGK 396
Query: 286 VLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREV 345
+ + YV + NSL+ +Y KCG + S R+F+ M+ R +SW AM+ Y++ G E
Sbjct: 397 AITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVET 456
Query: 346 VELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405
++LF+ M + +KPD VT V+S CS G+ ++G F +++ + G P I HY C+
Sbjct: 457 IQLFDKMVQHG-LKPDGVTLTGVISACSRAGLVEKGQRYF-KLMTSEYGIVPSIGHYSCM 514
Query: 406 VDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENA 465
+D+ R+GR+ EA+ FI MPF P A +LL ACR N++IG++ + L+E++P +
Sbjct: 515 IDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHP 574
Query: 466 GNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMRE 525
Y +LS++YAS G+W+ V ++R M+EK V K+PG+SWI+ LH+F A D S P +
Sbjct: 575 AGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLD 634
Query: 526 ELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPI 585
++ AK+++L+ K + GY PD S V +DV+E K K+L HSE+LA+ FGLI P G PI
Sbjct: 635 QIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHSERLAIAFGLIFVPSGQPI 694
Query: 586 RVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
RV KNLR+CVDCHN K +S V GR++ +RD RFH +GTCSCGD+W
Sbjct: 695 RVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGDFW 743
|
|
| TAIR|locus:2154389 LPA66 "LOW PSII ACCUMULATION 66" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1019 (363.8 bits), Expect = 1.1e-122, Sum P(2) = 1.1e-122
Identities = 199/444 (44%), Positives = 292/444 (65%)
Query: 191 ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRK 250
+ I + + ++D Y + G AR +F+ + +R VVS +ISGY+ G ++A+E+FR+
Sbjct: 205 DGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFRE 264
Query: 251 LQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS 310
++ + NYVT SVL A+S L +L G+ +H + I VL ++LIDMYSKCG
Sbjct: 265 MKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGI 324
Query: 311 LTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370
+ + VF+ + VI+W+AM+ G++ HG + ++ F MR+ V+P V Y+ +L+
Sbjct: 325 IEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAG-VRPSDVAYINLLT 383
Query: 371 GCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPT 430
CSHGG+ + G F ++V DG EP IEHYGC+VD+LGR+G + EA EFI NMP +P
Sbjct: 384 ACSHGGLVEEGRRYFSQMVSV-DGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPD 442
Query: 431 AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVREL 490
I +LLGACR+ NV++G+ V LM++ P ++G YV LSN+YAS G W +V+ +R
Sbjct: 443 DVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLR 502
Query: 491 MKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCV 550
MKEK + KDPG S I++D +LH F D SHP +E+++ + ++S K + AGY P + V
Sbjct: 503 MKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQV 562
Query: 551 LYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGR 610
L +++EE KE VL HSEK+A FGLI T G PIR++KNLRIC DCH+ K +SKVY R
Sbjct: 563 LLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKR 622
Query: 611 KVSLRDKNRFHHIVEGTCSCGDYW 634
K+++RD+ RFHH +G+CSC DYW
Sbjct: 623 KITVRDRKRFHHFQDGSCSCMDYW 646
|
|
| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1193 (425.0 bits), Expect = 2.8e-121, P = 2.8e-121
Identities = 234/580 (40%), Positives = 367/580 (63%)
Query: 60 EYDTLLNACVNQRTLRGGQRVHAHMI--KTCYRPPVYLRTRLIVFYNKCECLSDARKMFD 117
+ D ++ + ++ G+ AH + K+ +R V T LI Y + +A+K+FD
Sbjct: 166 DLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSY-TALIKGYASRGYIENAQKLFD 224
Query: 118 EMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFEL 177
E+ ++VVSW AMIS Y++ + EAL LF M++++ P+E T TV+++CA + EL
Sbjct: 225 EIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIEL 284
Query: 178 GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
G+Q+H I F S++ + ++L+D+Y+K G + A G+FE LP +DV+S +I GY
Sbjct: 285 GRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTH 344
Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHV-LRFE-IPSYV 295
+ L +EA+ LF+++ G N VT S+L A + L A+ G+ +H ++ R + + +
Sbjct: 345 MNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNAS 404
Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
L+ SLIDMY+KCG + + +VF+++ +++ SWNAM+ G++ HG +LF+ MR+
Sbjct: 405 SLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKI 464
Query: 356 NKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV-DCKDGFEPEIEHYGCVVDMLGRAGR 414
++PD +T++ +LS CSH GM D G +F + D K P++EHYGC++D+LG +G
Sbjct: 465 G-IQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYK--MTPKLEHYGCMIDLLGHSGL 521
Query: 415 VGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNL 474
EA E I M EP I SLL AC++H NV++GE + L++IEPEN G+YV+LSN+
Sbjct: 522 FKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNI 581
Query: 475 YASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQL 534
YASAGRW +V + R L+ +K + K PG S IE+D ++H F D+ HP E+ ++++
Sbjct: 582 YASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEM 641
Query: 535 SVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRIC 594
V ++AG+VPD S VL +++EE KE L HSEKLA+ FGLI T G + ++KNLR+C
Sbjct: 642 EVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVC 701
Query: 595 VDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
+CH K +SK+Y R++ RD+ RFHH +G CSC DYW
Sbjct: 702 RNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741
|
|
| TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1168 (416.2 bits), Expect = 1.7e-120, Sum P(2) = 1.7e-120
Identities = 233/603 (38%), Positives = 366/603 (60%)
Query: 38 SNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY-RPPV 93
SNG K L ++M G+E+ ++ C + R + G+ VH+ +K C+ R
Sbjct: 273 SNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDR 332
Query: 94 YLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRS 153
+ T L+ Y+KC L A+ +F EM +R+VVS+T+MI+ Y+++ + EA+ LF M
Sbjct: 333 FCNT-LLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 391
Query: 154 DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEA 213
P+ +T VL CA + GK++H I +++ I+V ++L+DMYAK G + EA
Sbjct: 392 GISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEA 451
Query: 214 RGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS-NYVTYASVLTALSG 272
VF + +D++S II GY++ EA+ LF L E S + T A VL A +
Sbjct: 452 ELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACAS 511
Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
L+A G+++H +++R S + NSL+DMY+KCG+L + +FD+++ + ++SW M
Sbjct: 512 LSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVM 571
Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV-DC 391
+ GY HG G+E + LFN MR+ ++ D ++++++L CSH G+ D G F+ + +C
Sbjct: 572 IAGYGMHGFGKEAIALFNQMRQAG-IEADEISFVSLLYACSHSGLVDEGWRFFNIMRHEC 630
Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGE 451
K EP +EHY C+VDML R G + +A FI+NMP P A I G+LL CR+H++V + E
Sbjct: 631 K--IEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAE 688
Query: 452 FVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQIL 511
V +++ E+EPEN G YV+++N+YA A +WE V R+R+ + ++ + K+PG SWIE+ +
Sbjct: 689 KVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRV 748
Query: 512 HTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLA 571
+ F A D S+P E + A ++++ + E GY P L D +E +KE+ L GHSEKLA
Sbjct: 749 NIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLA 808
Query: 572 LTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCG 631
+ G+I + G IRV KNLR+C DCH AKF+SK+ R++ LRD NRFH +G CSC
Sbjct: 809 MALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCR 868
Query: 632 DYW 634
+W
Sbjct: 869 GFW 871
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LIC3 | PP227_ARATH | No assigned EC number | 0.7208 | 0.9763 | 0.9856 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 634 | |||
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-170 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-160 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-67 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 1e-18 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 502 bits (1295), Expect = e-170
Identities = 218/591 (36%), Positives = 349/591 (59%), Gaps = 4/591 (0%)
Query: 46 LIEMATLG--LEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
L E+ G + YD L+ AC+ +++R + V+ H+ + + P Y+ R+++ +
Sbjct: 109 LFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168
Query: 104 NKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFA 163
KC L DAR++FDEM ERN+ SW +I + EA LF M ++ TF
Sbjct: 169 VKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFV 228
Query: 164 TVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER 223
+L + AG G+Q+H ++K+ +V +L+DMY+K G I +AR VF+ +PE+
Sbjct: 229 VMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK 288
Query: 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283
V+ ++++GYA G EEA+ L+ +++ G+ + T++ ++ S LA L H KQ H
Sbjct: 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAH 348
Query: 284 SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGR 343
+ ++R P +V +L+D+YSK G + +R VFD M + +ISWNA++ GY HG G
Sbjct: 349 AGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGT 408
Query: 344 EVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYG 403
+ VE+F M E V P+ VT+LAVLS C + G+ ++G +F + + +P HY
Sbjct: 409 KAVEMFERMIAEG-VAPNHVTFLAVLSACRYSGLSEQGWEIF-QSMSENHRIKPRAMHYA 466
Query: 404 CVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE 463
C++++LGR G + EA I+ PF+PT + +LL ACR+H N+++G ++L + PE
Sbjct: 467 CMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE 526
Query: 464 NAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPM 523
NYV+L NLY S+GR + +V E +K K ++ P +WIE+ + H+F + DR HP
Sbjct: 527 KLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQ 586
Query: 524 REELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGA 583
E+ K+ +L + E GYV + + +L DVDE++++ HSEKLA+ FGLI T E
Sbjct: 587 SREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWT 646
Query: 584 PIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
P+++ ++ RIC DCH KF++ V R++ +RD +RFHH G CSCGDYW
Sbjct: 647 PLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 482 bits (1241), Expect = e-160
Identities = 226/558 (40%), Positives = 339/558 (60%), Gaps = 5/558 (0%)
Query: 75 RGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAY 134
R G+ +H +++KT + V + LI Y +A K+F M ++ VSWTAMIS Y
Sbjct: 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGY 364
Query: 135 SQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHI 194
+ +AL + M + + P+E T A+VL++CA ++G ++H L + S++
Sbjct: 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYV 424
Query: 195 YVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE 254
V ++L++MY+K I +A VF +PE+DV+S T+II+G EA+ FR++ +
Sbjct: 425 VVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT 484
Query: 255 GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYS 314
+ N VT + L+A + + AL GK++H+HVLR I L N+L+D+Y +CG + Y+
Sbjct: 485 -LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA 543
Query: 315 RRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH 374
F N E+ V+SWN +L GY HG G VELFN M E+ V PD VT++++L CS
Sbjct: 544 WNQF-NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRM-VESGVNPDEVTFISLLCACSR 601
Query: 375 GGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAIL 434
GM +GL FH + + K P ++HY CVVD+LGRAG++ EA FI MP P A+
Sbjct: 602 SGMVTQGLEYFHSMEE-KYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVW 660
Query: 435 GSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494
G+LL ACR+H +V++GE Q + E++P + G Y++L NLYA AG+W++V RVR+ M+E
Sbjct: 661 GALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720
Query: 495 AVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDV 554
+T DPG SW+E+ +H F D SHP +E++ ++ K K +G S + D
Sbjct: 721 GLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DE 779
Query: 555 DEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSL 614
E K+ + GHSE+LA+ FGLI T G PI V KNL +C +CHN KF+SK+ R++S+
Sbjct: 780 IEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISV 839
Query: 615 RDKNRFHHIVEGTCSCGD 632
RD +FHH +G CSCGD
Sbjct: 840 RDTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 235 bits (602), Expect = 2e-67
Identities = 132/461 (28%), Positives = 233/461 (50%), Gaps = 11/461 (2%)
Query: 5 KKQSRAFSSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKA---LIEMATLGLEMRFEEY 61
+K+SR S + + L+ LCS+GQL +A L M L + + + Y
Sbjct: 35 RKRSRGLSVAASSSSSTHDSN-----SQLRALCSHGQLEQALKLLESMQELRVPVDEDAY 89
Query: 62 DTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE 121
L C +R + G RV + + + V L ++ + + L A +F +M E
Sbjct: 90 VALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPE 149
Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
R++ SW ++ Y++ + EAL L+ RML + P+ +TF VL +C G G+++
Sbjct: 150 RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREV 209
Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD 241
H+ +++ FE + V ++L+ MY K G + AR VF+ +P RD +S A+ISGY + G
Sbjct: 210 HAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGEC 269
Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
E +ELF ++ + + +T SV++A L G+++H +V++ V + NSL
Sbjct: 270 LEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSL 329
Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
I MY GS + +VF M + +SW AM+ GY K+G+ + +E + LM E++ V PD
Sbjct: 330 IQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALM-EQDNVSPD 388
Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
+T +VLS C+ G D G+ + HE+ + + G + +++M + + +ALE
Sbjct: 389 EITIASVLSACACLGDLDVGVKL-HELAE-RKGLISYVVVANALIEMYSKCKCIDKALEV 446
Query: 422 IKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEP 462
N+P + + + G + + F Q L+ ++P
Sbjct: 447 FHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKP 487
|
Length = 857 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 1e-18
Identities = 48/131 (36%), Positives = 69/131 (52%), Gaps = 23/131 (17%)
Query: 500 PGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEE-- 557
PG W E + D SHP +E +L + K G VP+ + +DVD E
Sbjct: 1 PGCVWSEG----KKTLSGDGSHPTSKE------ELFQRIKVEGVVPETKEIGHDVDAEEF 50
Query: 558 ----QKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNL-RICVDCHNFAKFVSKVYGRKV 612
K K+L H+EK AL +GL+ T R+IK L R+C DCH F ++++K GR++
Sbjct: 51 RDNGIKGKLLASHAEKQALAYGLLTT------RIIKVLKRMCGDCHEFFRYIAKYTGREI 104
Query: 613 SLRDKNRFHHI 623
+RD +RFHH
Sbjct: 105 IVRDPSRFHHF 115
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 6e-14
Identities = 44/161 (27%), Positives = 81/161 (50%), Gaps = 8/161 (4%)
Query: 65 LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
L+AC L G+ +HAH+++T +L L+ Y +C ++ A F+ E++V
Sbjct: 496 LSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDV 554
Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAF----GFELGKQ 180
VSW +++ Y A+ LF RM+ S P+E TF ++L +C+ + G E
Sbjct: 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEY--- 611
Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
HS+ K + ++ + ++D+ +AG++ EA +P
Sbjct: 612 FHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 5e-10
Identities = 64/267 (23%), Positives = 112/267 (41%), Gaps = 40/267 (14%)
Query: 200 LLDMYAKAGRIHEARGVFECLPER----DVVSCTAIISGYAQLGLDEEAIELFRKLQVEG 255
L+ + A + I A V + E D T +IS A+ G + E+F ++ G
Sbjct: 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG 502
Query: 256 MISNYVTYASVL--TALSGLAALGHG-------KQVHSHVLRFEIPSYVVLQNSLIDMYS 306
+ +N T+ +++ A +G A G K V P VV N+LI S
Sbjct: 503 VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK--------PDRVVF-NALI---S 550
Query: 307 KCGSLTYSRRVFDNMSERTV---------ISWNAMLVGYSKHGMGREVVELFNLMREENK 357
CG R FD ++E I+ A++ + G E++ ++ E N
Sbjct: 551 ACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN- 609
Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
+K Y ++ CS G D L+++ ++ K G +P+ + +VD+ G AG + +
Sbjct: 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK--KKGVKPDEVFFSALVDVAGHAGDLDK 667
Query: 418 ALEFIKNMP---FEPTAAILGSLLGAC 441
A E +++ + SL+GAC
Sbjct: 668 AFEILQDARKQGIKLGTVSYSSLMGAC 694
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 2e-09
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH 374
V+++N ++ GY K G E ++LFN M++ +KP+ TY ++ G
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRG-IKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 9e-09
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCA 170
+VV++ +I Y +K EAL LF M + +PN +T++ ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 6e-07
Identities = 56/302 (18%), Positives = 141/302 (46%), Gaps = 16/302 (5%)
Query: 162 FATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
+ T++++CA + + ++ ++ + E++++ +L+D A+AG++ +A G + +
Sbjct: 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR 534
Query: 222 ERDV----VSCTAIISGYAQLGLDEEAIELFRKLQVEG--MISNYVTYASVLTALSGLAA 275
++V V A+IS Q G + A ++ +++ E + +++T +++ A +
Sbjct: 535 SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594
Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS---WNAM 332
+ K+V+ + + I + ++ S+ G ++ ++D+M ++ V + +
Sbjct: 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA 654
Query: 333 LVGYSKH-GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
LV + H G + E+ R++ +K +V+Y +++ CS+ + L ++ +I
Sbjct: 655 LVDVAGHAGDLDKAFEILQDARKQG-IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI 713
Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEF---IKNMPFEPTAAILGSLLGACRVHYNVD 448
K P + ++ L ++ +ALE +K + P LL A + D
Sbjct: 714 K--LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDAD 771
Query: 449 IG 450
+G
Sbjct: 772 VG 773
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 50/208 (24%), Positives = 81/208 (38%), Gaps = 36/208 (17%)
Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMS----ERTVISWNAMLVGYSKHGMGREVVELFNL 351
L +LI +K G + VF M E V ++ A++ G ++ G + + +
Sbjct: 473 KLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGI 532
Query: 352 MREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411
MR +N VKPD V + A++S C G DR V E+ +P+ G ++
Sbjct: 533 MRSKN-VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591
Query: 412 AGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVIL 471
AG+V A E + + YN+ + PE Y I
Sbjct: 592 AGQVDRAKEVYQMIH-----------------EYNI-----------KGTPEV---YTIA 620
Query: 472 SNLYASAGRWEDVTRVRELMKEKAVTKD 499
N + G W+ + + MK+K V D
Sbjct: 621 VNSCSQKGDWDFALSIYDDMKKKGVKPD 648
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 2e-06
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL 270
DVV+ +I GY + G EEA++LF +++ G+ N TY+ ++ L
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 4e-05
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 327 ISWNAMLVGYSKHGMGREVVELFNLMREEN 356
+++N+++ GY K G E +ELF M+E+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 327 ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
+++N ++ G K G E +ELF M+E ++PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERG-IEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 13/31 (41%), Positives = 24/31 (77%)
Query: 226 VSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
V+ ++ISGY + G EEA+ELF++++ +G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 634 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.89 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.89 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.87 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.86 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.85 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.85 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.85 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.83 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.82 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.82 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.81 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.8 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.78 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.75 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.73 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.72 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.69 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.65 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.65 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.62 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.53 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.53 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.52 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.52 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.51 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.51 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.51 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.44 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.43 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.43 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.43 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.41 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.4 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.38 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.35 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.34 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.34 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.34 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.34 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.34 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.33 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.33 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.3 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.28 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.27 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.27 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.23 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.23 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.22 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.21 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.17 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.11 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.09 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.08 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.03 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.03 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.03 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.02 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.01 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.0 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.99 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.97 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.95 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.89 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.88 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.86 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.85 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.81 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.8 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.8 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.76 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.71 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.7 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.68 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.68 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.67 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.66 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.66 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.63 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.62 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.6 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.59 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.59 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.59 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.57 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.56 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.56 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.53 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.51 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.49 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.48 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.46 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.45 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.44 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.42 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.42 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.41 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.4 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.37 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.36 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.3 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.29 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.29 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.24 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.24 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.22 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.22 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.19 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.16 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.15 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.14 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.12 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.1 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.1 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.1 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.08 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.07 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.06 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.02 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.02 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.99 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.98 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.98 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.97 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.96 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.95 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.94 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.94 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.93 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.91 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.9 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.84 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.79 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.72 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.63 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.61 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.6 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.5 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.48 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.47 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.47 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.43 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.35 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.32 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.32 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.3 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.26 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.25 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.23 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.2 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.2 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.18 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.17 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.14 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.13 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.13 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.11 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.1 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.1 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.07 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.06 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.06 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.02 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.01 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.01 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.0 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.99 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.96 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.93 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.91 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.83 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.82 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.82 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.79 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.73 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.72 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.7 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.7 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.7 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.7 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.63 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.63 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.61 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.59 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.59 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.57 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.56 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.54 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.53 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.51 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.46 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.41 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.33 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.31 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.27 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.27 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.27 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 96.24 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.2 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.11 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.11 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.08 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.07 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.89 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.87 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.82 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.77 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.5 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.35 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.35 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.33 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.31 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.22 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.03 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.97 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 94.9 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.73 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 94.23 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.21 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.18 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.17 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.11 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.07 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.04 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 93.94 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.94 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.81 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 93.78 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 93.75 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.65 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 93.5 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.35 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.31 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.19 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.02 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.99 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.88 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 92.77 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 92.54 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 92.22 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 92.19 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 92.08 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 91.88 | |
| PRK09687 | 280 | putative lyase; Provisional | 91.83 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 91.65 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 91.64 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.57 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.27 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 91.11 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.7 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 90.57 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 90.45 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 90.32 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 90.26 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.26 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 90.25 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 90.22 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 90.21 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 89.81 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 89.74 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 89.57 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 89.51 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 89.51 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 89.47 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 89.34 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 89.08 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 88.46 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 88.43 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.41 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 88.34 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.33 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 87.81 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 87.78 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 87.6 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 87.5 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 87.42 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 87.41 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 87.24 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 87.18 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 87.11 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 86.51 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 86.05 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 86.0 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 85.84 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 85.44 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 85.04 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 84.33 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 83.89 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 83.87 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 83.41 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 83.2 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 82.49 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 81.97 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 81.91 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 81.49 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 80.91 | |
| PHA02875 | 413 | ankyrin repeat protein; Provisional | 80.89 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 80.49 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 80.34 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 80.33 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 80.14 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 80.04 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-122 Score=1014.02 Aligned_cols=607 Identities=36% Similarity=0.679 Sum_probs=596.1
Q ss_pred CCCChhhHHHhhhcCcHH---HHHHHHHHcC-CCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 006705 26 FPPNPQNLKTLCSNGQLT---KALIEMATLG-LEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIV 101 (634)
Q Consensus 26 ~~~~~~~i~~~~~~~~~~---~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 101 (634)
...++.+|.+|++.|+.. ++|+.|...+ +.||..||+.++.+|++.++++.|.++|..|.+.|+.||..++|.||+
T Consensus 87 ~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 87 GVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166 (697)
T ss_pred ceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 346788999999998865 6788998765 789999999999999999999999999999999999999999999999
Q ss_pred HHHcCCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHH
Q 006705 102 FYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181 (634)
Q Consensus 102 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 181 (634)
+|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|+.+.+.++
T Consensus 167 ~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l 246 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQL 246 (697)
T ss_pred HHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChh
Q 006705 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYV 261 (634)
Q Consensus 182 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 261 (634)
|..+.+.|+.+|..++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..
T Consensus 247 ~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~ 326 (697)
T PLN03081 247 HCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF 326 (697)
T ss_pred HHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCC
Q 006705 262 TYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGM 341 (634)
Q Consensus 262 t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~ 341 (634)
||++++.+|++.|++++|.++|..+.+.|+++|..++|+||++|+|+|++++|.++|++|.+||+++||+||.+|+++|+
T Consensus 327 t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~ 406 (697)
T PLN03081 327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGR 406 (697)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHH
Q 006705 342 GREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421 (634)
Q Consensus 342 ~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 421 (634)
.++|+++|++|.+. |+.||..||++++.+|++.|.+++|.++|+.|.+.+ |+.|+..+|++||++|++.|++++|.++
T Consensus 407 ~~~A~~lf~~M~~~-g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~-g~~p~~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 407 GTKAVEMFERMIAE-GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENH-RIKPRAMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred HHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc-CCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence 99999999999999 999999999999999999999999999999999866 9999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCCCccCCc
Q 006705 422 IKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPG 501 (634)
Q Consensus 422 ~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 501 (634)
|++|+..|+..+|++|+.+|+.+|+.+.|+.+++++.+++|++..+|..|+++|++.|+|++|.++++.|+++|+++.||
T Consensus 485 ~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g 564 (697)
T PLN03081 485 IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPA 564 (697)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCccccccCchhhHHHHhhhhhHHHHHHHcccCCCC
Q 006705 502 RSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPE 581 (634)
Q Consensus 502 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 581 (634)
+||+++++.+|.|+++|..||+.++||+++.++..+|++.||.||+.++++++++++|+..+.+||||||++|||+++||
T Consensus 565 ~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~ 644 (697)
T PLN03081 565 CTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSE 644 (697)
T ss_pred eeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeccccCccchhhhHHHhhhcCceeEEccCCccccccCCccCCCCCC
Q 006705 582 GAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634 (634)
Q Consensus 582 ~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~~d~~~~h~~~~g~~sc~~~~ 634 (634)
|+||||+||||+|+|||+++||||++++|+|||||.+|||||+||+|||+|||
T Consensus 645 ~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 645 WTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 99999999999999999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-120 Score=1020.78 Aligned_cols=622 Identities=37% Similarity=0.666 Sum_probs=607.1
Q ss_pred CCCccchhhhcccchhhhhcCCCCCCCChhhHHHhhhcCcHH---HHHHHHHHcCCCCCHhhHHHHHHHHhccCCchHHH
Q 006705 2 RRPKKQSRAFSSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLT---KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQ 78 (634)
Q Consensus 2 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 78 (634)
.+.|+.++|.++|+.+. .|+..+|+.+|++|+++|+.. ++|.+|.+.|+.||..||+.++.+|++.|+++.|.
T Consensus 233 ~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~ 308 (857)
T PLN03077 233 VKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGR 308 (857)
T ss_pred hcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH
Confidence 35678899999998875 467789999999999999866 67899999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 006705 79 RVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158 (634)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 158 (634)
++|..|.+.|+.||..+||+||.+|+++|++++|.++|++|.+||+++||+||.+|++.|++++|+++|++|...|+.||
T Consensus 309 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd 388 (857)
T PLN03077 309 EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388 (857)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhc
Q 006705 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238 (634)
Q Consensus 159 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 238 (634)
..||++++.+|++.|+++.|.++|+.+.+.|+.|+..++|+||++|+++|++++|.++|++|.++|+++||+||.+|+++
T Consensus 389 ~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~ 468 (857)
T PLN03077 389 EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLN 468 (857)
T ss_pred ceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 006705 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVF 318 (634)
Q Consensus 239 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f 318 (634)
|+.++|+.+|++|.. +++||..||+++|.+|++.|+++.+.++|..+.+.|+.+|..++|+||++|+|+|++++|.++|
T Consensus 469 g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f 547 (857)
T PLN03077 469 NRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF 547 (857)
T ss_pred CCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHH
Confidence 999999999999986 6999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCC
Q 006705 319 DNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398 (634)
Q Consensus 319 ~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~ 398 (634)
+.+ .+|+++||+||.+|+++|+.++|+++|++|.+. |+.||..||+.+|.+|++.|++++|.++|+.|.+.+ |+.|+
T Consensus 548 ~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~-g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~-gi~P~ 624 (857)
T PLN03077 548 NSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES-GVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKY-SITPN 624 (857)
T ss_pred Hhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHh-CCCCc
Confidence 999 999999999999999999999999999999999 999999999999999999999999999999999666 99999
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhc
Q 006705 399 IEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASA 478 (634)
Q Consensus 399 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 478 (634)
..+|++|+++|+++|++++|.+++++|+.+||..+|++|+.+|+.+++.+.|+.+.+++++++|+++..|..|+++|++.
T Consensus 625 ~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~ 704 (857)
T PLN03077 625 LKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADA 704 (857)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHhhCCCccCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCccccccCchhh
Q 006705 479 GRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQ 558 (634)
Q Consensus 479 g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~ 558 (634)
|+|++|.++++.|+++|++++||+||+++++.+|.|+++|.+||+.++||..+.+|..+|++.||+||++.++ ++++++
T Consensus 705 g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~ 783 (857)
T PLN03077 705 GKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVS 783 (857)
T ss_pred CChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999888 557788
Q ss_pred HHHHhhhhhHHHHHHHcccCCCCCCcEEEEeccccCccchhhhHHHhhhcCceeEEccCCccccccCCccCCCC
Q 006705 559 KEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGD 632 (634)
Q Consensus 559 ~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~~d~~~~h~~~~g~~sc~~ 632 (634)
|+..+++||||||++|||+++||++||||+||||+|+|||+++||||++.+|+|||||.+|||||++|+|||+|
T Consensus 784 k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 784 KDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-76 Score=664.82 Aligned_cols=590 Identities=24% Similarity=0.368 Sum_probs=523.2
Q ss_pred CCCCCCCChhhHHHhhhcCcHH---HHHHHHHHcCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHH
Q 006705 22 TVPSFPPNPQNLKTLCSNGQLT---KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTR 98 (634)
Q Consensus 22 ~~~~~~~~~~~i~~~~~~~~~~---~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 98 (634)
..|+...++.++.+|++.|+.. ++|+.|.+.|+.|+..+|..++++|.+.+.++.|.++|..+.+.+..++..++|+
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 3456677889999999999866 6789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHH
Q 006705 99 LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178 (634)
Q Consensus 99 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 178 (634)
||.+|+++|+++.|.++|++|++||+++||+||.+|++.|++++|+++|++|...|+.||..||++++++|+..+++..+
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~ 206 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG 206 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCcc
Q 006705 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS 258 (634)
Q Consensus 179 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 258 (634)
.++|..+.+.|+.||..++|+||++|+++|++++|.++|++|+.+|+++||+||.+|++.|++++|+++|.+|...|+.|
T Consensus 207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~P 286 (857)
T PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDP 286 (857)
T ss_pred HHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHh
Q 006705 259 NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338 (634)
Q Consensus 259 ~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 338 (634)
|..||+.++.+|++.|+++.|.++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|.+||+++||+||.+|++
T Consensus 287 d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~ 366 (857)
T PLN03077 287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEK 366 (857)
T ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHH
Q 006705 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418 (634)
Q Consensus 339 ~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 418 (634)
.|++++|+++|++|.+. |+.||..||+.++.+|++.|++++|.++++.|.+. |+.|+..+|++||++|+++|++++|
T Consensus 367 ~g~~~~A~~lf~~M~~~-g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~--g~~~~~~~~n~Li~~y~k~g~~~~A 443 (857)
T PLN03077 367 NGLPDKALETYALMEQD-NVSPDEITIASVLSACACLGDLDVGVKLHELAERK--GLISYVVVANALIEMYSKCKCIDKA 443 (857)
T ss_pred CCCHHHHHHHHHHHHHh-CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh--CCCcchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999 99999999999999999999999999999999987 9999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCCCcc
Q 006705 419 LEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTK 498 (634)
Q Consensus 419 ~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 498 (634)
.++|++|+ +||.++|++++.+|.+.|+.++|..+++++.+..++|..+|..++.+|++.|.++.+.+++..|.+.|+.+
T Consensus 444 ~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~ 522 (857)
T PLN03077 444 LEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF 522 (857)
T ss_pred HHHHHhCC-CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCc
Confidence 99999997 57999999999999999999999999999876545556677766666666666666666666665555543
Q ss_pred CCc-----------------------------eeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCcc
Q 006705 499 DPG-----------------------------RSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSC 549 (634)
Q Consensus 499 ~~~-----------------------------~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~ 549 (634)
+.. .+|. .++.++..|+..++ +.+++++|.+.|+.||..+
T Consensus 523 ~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n-------~lI~~~~~~G~~~~----A~~lf~~M~~~g~~Pd~~T 591 (857)
T PLN03077 523 DGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWN-------ILLTGYVAHGKGSM----AVELFNRMVESGVNPDEVT 591 (857)
T ss_pred cceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHH-------HHHHHHHHcCCHHH----HHHHHHHHHHcCCCCCccc
Confidence 321 2343 23556666776654 7889999999999999988
Q ss_pred ccccCchhhHHHHh---hhhhHHHHHHHcccCCCCCCcEEEEeccccCccchhhhHHHhhhcCc------eeEEccCCcc
Q 006705 550 VLYDVDEEQKEKVL---LGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGR------KVSLRDKNRF 620 (634)
Q Consensus 550 ~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~------~~~~~d~~~~ 620 (634)
+...+..+.+.+.+ ....+.+...+|+.+...+.. ++++.+..+|+..+|.+++.+|+.. ..++..|+.+
T Consensus 592 ~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~-~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~ 670 (857)
T PLN03077 592 FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA-CVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIH 670 (857)
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH-HHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Confidence 76655544443322 234455555778776655544 7889999999999999999999633 2344555555
Q ss_pred ccccCCc
Q 006705 621 HHIVEGT 627 (634)
Q Consensus 621 h~~~~g~ 627 (634)
.+.+.|+
T Consensus 671 ~~~e~~e 677 (857)
T PLN03077 671 RHVELGE 677 (857)
T ss_pred CChHHHH
Confidence 4444443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-66 Score=575.05 Aligned_cols=491 Identities=15% Similarity=0.221 Sum_probs=447.5
Q ss_pred CCCccchhhhcccchhhhhcC-CCCCCCChhhHHHhhhcCcHHHH---HHHHHHcCCCCCHhhHHHHHHHHhccCCchHH
Q 006705 2 RRPKKQSRAFSSLTFTQQQLT-VPSFPPNPQNLKTLCSNGQLTKA---LIEMATLGLEMRFEEYDTLLNACVNQRTLRGG 77 (634)
Q Consensus 2 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~---~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 77 (634)
.+.|++++|+++|+.+..... .++...+..++.+|++.|...++ |+.|. .||..+|+.+|.+|++.|+++.|
T Consensus 381 ~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~----~pd~~Tyn~LL~a~~k~g~~e~A 456 (1060)
T PLN03218 381 LRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR----NPTLSTFNMLMSVCASSQDIDGA 456 (1060)
T ss_pred HHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC----CCCHHHHHHHHHHHHhCcCHHHH
Confidence 356888999999999876543 34444456778888888877644 55554 39999999999999999999999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcC----CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 006705 78 QRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR----ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRS 153 (634)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 153 (634)
.++|+.|.+.|+.||..+||+||.+|+++|++++|.++|++|. .||+.+||+||.+|++.|++++|+++|++|...
T Consensus 457 ~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~ 536 (1060)
T PLN03218 457 LRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK 536 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999998 489999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHH--hCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC----CChhh
Q 006705 154 DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIK--SNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE----RDVVS 227 (634)
Q Consensus 154 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~~~ 227 (634)
|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.||..+|++||++|+++|++++|.++|+.|.+ ++..+
T Consensus 537 Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~t 616 (1060)
T PLN03218 537 NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV 616 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHH
Confidence 9999999999999999999999999999999987 67899999999999999999999999999999975 56799
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 006705 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSK 307 (634)
Q Consensus 228 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~ 307 (634)
||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++||++|++
T Consensus 617 ynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k 696 (1060)
T PLN03218 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN 696 (1060)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhhcC----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 006705 308 CGSLTYSRRVFDNMS----ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLA 383 (634)
Q Consensus 308 ~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 383 (634)
+|++++|.++|++|. .||+++||+||.+|++.|++++|+++|++|.+. |+.||..||+.++.+|++.|++++|.+
T Consensus 697 ~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~Ty~sLL~a~~k~G~le~A~~ 775 (1060)
T PLN03218 697 AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYSILLVASERKDDADVGLD 775 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999995 689999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHhhhccCCccCChHHHHHHHHHHH----HcC-------------------CHHHHHHHHHhC---CCCCCHHHHHHH
Q 006705 384 VFHEIVDCKDGFEPEIEHYGCVVDMLG----RAG-------------------RVGEALEFIKNM---PFEPTAAILGSL 437 (634)
Q Consensus 384 ~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~~A~~~~~~m---~~~p~~~~~~~l 437 (634)
+|+.|.+. |+.||..+|++|+.+|. +++ ..++|..+|++| ++.||..+|+++
T Consensus 776 l~~~M~k~--Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~v 853 (1060)
T PLN03218 776 LLSQAKED--GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQV 853 (1060)
T ss_pred HHHHHHHc--CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHH
Confidence 99999987 99999999999998743 332 236799999999 778999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHh-ccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCCCccCCc
Q 006705 438 LGACRVHYNVDIGEFVGQRLM-EIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPG 501 (634)
Q Consensus 438 l~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 501 (634)
+.++...+..+.+..+++.+. .-.+++..+|++|++.+.+. .++|..++++|...|+.|+..
T Consensus 854 L~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 854 LGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 988878888888877776654 23445678999999988432 368999999999999988763
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-63 Score=547.41 Aligned_cols=507 Identities=15% Similarity=0.209 Sum_probs=418.9
Q ss_pred cCCCCCCCChhhHHHhhhcCcHH---HHHHHHHHcCC-CCCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHH
Q 006705 21 LTVPSFPPNPQNLKTLCSNGQLT---KALIEMATLGL-EMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLR 96 (634)
Q Consensus 21 ~~~~~~~~~~~~i~~~~~~~~~~---~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 96 (634)
...++.+.|..++..+++.|+.. ++|++|.+.|+ .|+..+++.++.+|.+.|.++.|..++..|.. ||..+|
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Ty 440 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTF 440 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHH
Confidence 34456677788888888887754 67888888884 56777888888888888888888888888763 888899
Q ss_pred HHHHHHHHcCCChHHHHHHHhhcCC----CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcc
Q 006705 97 TRLIVFYNKCECLSDARKMFDEMRE----RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGA 172 (634)
Q Consensus 97 ~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 172 (634)
|.||.+|++.|+++.|.++|++|.+ ||..+||+||.+|++.|++++|.++|++|...|+.||..||+.++.+|++.
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 9999999999999999999988864 788889999999999999999999999998888889999999999999999
Q ss_pred CCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCC------CCChhhHHHHHHHHHhcCChHHHHH
Q 006705 173 FGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP------ERDVVSCTAIISGYAQLGLDEEAIE 246 (634)
Q Consensus 173 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~------~~~~~~~~~li~~~~~~g~~~~A~~ 246 (634)
|++++|.++|+.|.+.|+.||..+||.||.+|++.|++++|.++|++|. .||.++|++||.+|++.|++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999888888999999999999999999999999998884 4788899999999999999999999
Q ss_pred HHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC----
Q 006705 247 LFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS---- 322 (634)
Q Consensus 247 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---- 322 (634)
+|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|..|.+.|+.||..+|++|+++|++.|++++|.++|+.|.
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999998888899999999999999999999999999999988888998999999999999999999999998887
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHH
Q 006705 323 ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHY 402 (634)
Q Consensus 323 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~ 402 (634)
.||..+|++||.+|++.|++++|.++|++|.+. |+.||..||+.++.+|++.|++++|.++|++|.+. |+.||..+|
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~--Gi~Pd~~Ty 757 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL--GLCPNTITY 757 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCCHHHH
Confidence 368888999999999999999999999999888 88899999999999999999999999999998876 888999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhc-----------------------CCchHHHHHHHH
Q 006705 403 GCVVDMLGRAGRVGEALEFIKNM---PFEPTAAILGSLLGACRVH-----------------------YNVDIGEFVGQR 456 (634)
Q Consensus 403 ~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~-----------------------~~~~~a~~~~~~ 456 (634)
+.|+.+|++.|++++|.+++.+| .+.||..+|++++..|... +..+.|..++++
T Consensus 758 ~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~e 837 (1060)
T PLN03218 758 SILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRE 837 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHH
Confidence 99999999999999999998888 6678888888888765421 112457777777
Q ss_pred HhccC-CCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCCCccCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHH
Q 006705 457 LMEIE-PENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLS 535 (634)
Q Consensus 457 ~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 535 (634)
+.+.+ .++..+|..++.++.+.+.++.+.++++.|...+..++....-. ++.|...+ ..++..++
T Consensus 838 M~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~--------Li~g~~~~------~~~A~~l~ 903 (1060)
T PLN03218 838 TISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLST--------LVDGFGEY------DPRAFSLL 903 (1060)
T ss_pred HHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHH--------HHHhhccC------hHHHHHHH
Confidence 77643 22467888888888888888888888888866655433222111 12222111 13578999
Q ss_pred HHHHHcCcccCCc
Q 006705 536 VKFKEAGYVPDMS 548 (634)
Q Consensus 536 ~~m~~~g~~p~~~ 548 (634)
++|...|+.|+.+
T Consensus 904 ~em~~~Gi~p~~~ 916 (1060)
T PLN03218 904 EEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHcCCCCCcc
Confidence 9999999999986
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-59 Score=514.05 Aligned_cols=485 Identities=23% Similarity=0.311 Sum_probs=417.2
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHH
Q 006705 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD-TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSL 200 (634)
Q Consensus 122 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 200 (634)
++..+|+++|.+|.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++++.+.++|..|.+.|+.||..++|.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 577899999999999999999999999998764 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHH
Q 006705 201 LDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGK 280 (634)
Q Consensus 201 i~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 280 (634)
+++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 006705 281 QVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360 (634)
Q Consensus 281 ~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p 360 (634)
++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+. |+.|
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~-g~~p 323 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS-GVSI 323 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006705 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGA 440 (634)
Q Consensus 361 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~ 440 (634)
|..||++++.+|++.|++++|.+++..|.+. |+.||..+|++||++|+++|++++|.++|++|. +||..+|++||.+
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~--g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~ 400 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRT--GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAG 400 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHh--CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHH
Confidence 9999999999999999999999999999987 999999999999999999999999999999997 6899999999999
Q ss_pred HHhcCCchHHHHHHHHHhcc--CCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhh-CCCccCCceeEEEECCEEEEEEeC
Q 006705 441 CRVHYNVDIGEFVGQRLMEI--EPENAGNYVILSNLYASAGRWEDVTRVRELMKE-KAVTKDPGRSWIELDQILHTFHAS 517 (634)
Q Consensus 441 ~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~s~~~~~~~~~~~~~~ 517 (634)
|.++|+.++|..+++++.+. .| |..+|..++.+|++.|++++|.++|+.|.+ .|+.|+... |. .++.+
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~-y~-------~li~~ 471 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMH-YA-------CMIEL 471 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccc-hH-------hHHHH
Confidence 99999999999999998764 45 478999999999999999999999999976 578765422 21 12333
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHcCcccCCccccccCchhhHHHHhhhhhHHH-HHHHcccCCCCCCcEEEEeccccCcc
Q 006705 518 DRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKL-ALTFGLIGTPEGAPIRVIKNLRICVD 596 (634)
Q Consensus 518 ~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~l-a~~~~~~~~~~~~~~~~~~~l~~~~~ 596 (634)
....+..++ +.+++ ++.+..|+......-+..+.+.+.+ ...+.. ...+++.+......+.+++-+..+|+
T Consensus 472 l~r~G~~~e----A~~~~---~~~~~~p~~~~~~~Ll~a~~~~g~~-~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~ 543 (697)
T PLN03081 472 LGREGLLDE----AYAMI---RRAPFKPTVNMWAALLTACRIHKNL-ELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGR 543 (697)
T ss_pred HHhcCCHHH----HHHHH---HHCCCCCCHHHHHHHHHHHHHcCCc-HHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCC
Confidence 334444444 33444 4457888775422222222111100 000111 11244444444555666777889999
Q ss_pred chhhhHHHhhhcCceeEEc-------cCCccccccCCc
Q 006705 597 CHNFAKFVSKVYGRKVSLR-------DKNRFHHIVEGT 627 (634)
Q Consensus 597 ~~~~~~~~s~~~~~~~~~~-------d~~~~h~~~~g~ 627 (634)
..+|.++..+|..+.+-.. -.+..|.|-.|-
T Consensus 544 ~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d 581 (697)
T PLN03081 544 QAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGD 581 (697)
T ss_pred HHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCC
Confidence 9999999999998865322 234556676553
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-27 Score=272.45 Aligned_cols=479 Identities=11% Similarity=0.055 Sum_probs=302.0
Q ss_pred CCccchhhhcccchhhhhcCCCCCCCChhhHHHhhhcCcHH---HHHHHHHHcCCCCCHhhHHHHHHHHhccCCchHHHH
Q 006705 3 RPKKQSRAFSSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLT---KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQR 79 (634)
Q Consensus 3 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 79 (634)
+.|++++|...++...+.. +.....+..+-..+...|+.. +.|....+.... +......++..+.+.|+++.|..
T Consensus 375 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 452 (899)
T TIGR02917 375 ALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALA 452 (899)
T ss_pred HCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHH
Confidence 3566777777777665432 122223334444455555544 334444433322 22334445566667777777777
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 006705 80 VHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE---RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156 (634)
Q Consensus 80 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 156 (634)
+++.+.+.. +.+..+++.+...|...|++++|.+.|+++.+ .+...+..+...+...|++++|.+.|+++...+ +
T Consensus 453 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~ 530 (899)
T TIGR02917 453 AAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-P 530 (899)
T ss_pred HHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-c
Confidence 777766543 44556667777777777777777777776543 244556666677777777777777777776543 2
Q ss_pred CChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC---CChhhHHHHHH
Q 006705 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE---RDVVSCTAIIS 233 (634)
Q Consensus 157 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~ 233 (634)
.+..++..+...+...|+.++|...+..+.+.+ +.+...+..++..|.+.|++++|..+++.+.. .+...|..+..
T Consensus 531 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 609 (899)
T TIGR02917 531 KNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGR 609 (899)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345566666666667777777777777766654 44555666677777777777777777766543 34556777777
Q ss_pred HHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 006705 234 GYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTY 313 (634)
Q Consensus 234 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 313 (634)
.|.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|..++..+.+.. +.+...+..++..+.+.|++++
T Consensus 610 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 687 (899)
T TIGR02917 610 AQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTES 687 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777776542 2344456666666667777777777777766653 4455666667777777777777
Q ss_pred HHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 006705 314 SRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390 (634)
Q Consensus 314 A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 390 (634)
|.++++.+.+ .+...|..+...+.+.|++++|++.|+++... .|+..++..+..++.+.|++++|.+.++.+.+
T Consensus 688 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 764 (899)
T TIGR02917 688 AKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLEAWLK 764 (899)
T ss_pred HHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777776653 24455666666677777777777777776654 34445566666667777777777777776665
Q ss_pred ccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchH
Q 006705 391 CKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468 (634)
Q Consensus 391 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 468 (634)
. .+.+...+..+...|.+.|++++|.+.|+++ ..+++..+++.+...+...|+ ..|...++++.+..|+++..+
T Consensus 765 ~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~ 840 (899)
T TIGR02917 765 T---HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAIL 840 (899)
T ss_pred h---CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHH
Confidence 3 2445666666777777777777777777665 223455566666666666666 556666666666666666666
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHhhCC
Q 006705 469 VILSNLYASAGRWEDVTRVRELMKEKA 495 (634)
Q Consensus 469 ~~l~~~~~~~g~~~~A~~~~~~m~~~~ 495 (634)
..++.+|...|++++|.+.++++.+.+
T Consensus 841 ~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 841 DTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 666666666777777777777666554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-26 Score=267.80 Aligned_cols=478 Identities=12% Similarity=0.023 Sum_probs=401.0
Q ss_pred CCccchhhhcccchhhhhcCCCCCCCChhhHHHhhhcCcHHH---HHHHHHHcCCCCCHhhHHHHHHHHhccCCchHHHH
Q 006705 3 RPKKQSRAFSSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTK---ALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQR 79 (634)
Q Consensus 3 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 79 (634)
+.|++++|+..+....... +.+...+..+...+.+.|+..+ .|+++.+... .+...+..+...+...|+.+.|..
T Consensus 341 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~ 418 (899)
T TIGR02917 341 RLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIA 418 (899)
T ss_pred HCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHH
Confidence 4678889998888765432 2333445566667788887764 4555555432 255667777888889999999999
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 006705 80 VHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE---RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156 (634)
Q Consensus 80 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 156 (634)
.+..+.+... ........++..|.+.|++++|.++++.+.. ++..+|+.+...|...|++++|...|+++.... +
T Consensus 419 ~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~ 496 (899)
T TIGR02917 419 DLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-P 496 (899)
T ss_pred HHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-C
Confidence 9999988752 3345667788899999999999999998865 467789999999999999999999999998753 2
Q ss_pred CChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC---CChhhHHHHHH
Q 006705 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE---RDVVSCTAIIS 233 (634)
Q Consensus 157 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~ 233 (634)
.+...+..+...+...|++++|.+.++.+.+.+ +.+..++..+...|.+.|+.++|...|+++.. .+...+..++.
T Consensus 497 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 575 (899)
T TIGR02917 497 DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQ 575 (899)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHH
Confidence 345567778888899999999999999998875 56788899999999999999999999998743 35667888999
Q ss_pred HHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 006705 234 GYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTY 313 (634)
Q Consensus 234 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 313 (634)
.|.+.|++++|+.+++++.... +.+..++..+..++...|++++|...+..+.+.. +.+...+..+...|.+.|++++
T Consensus 576 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 653 (899)
T TIGR02917 576 YYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAK 653 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998753 5567789999999999999999999999998875 5567788899999999999999
Q ss_pred HHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 006705 314 SRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390 (634)
Q Consensus 314 A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 390 (634)
|..+|+++.+ .+..+|..++..+...|++++|.++++.+.+. .+++...+..+...+...|++++|...|+.+..
T Consensus 654 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 731 (899)
T TIGR02917 654 AITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ--HPKAALGFELEGDLYLRQKDYPAAIQAYRKALK 731 (899)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9999998764 36789999999999999999999999999886 355677888888899999999999999999985
Q ss_pred ccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchH
Q 006705 391 CKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468 (634)
Q Consensus 391 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 468 (634)
. .|+..++..++.++.+.|++++|.+.+.++ ..+.+...+..+...|...|+.++|...++++.+..|+++..+
T Consensus 732 ~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 807 (899)
T TIGR02917 732 R----APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVL 807 (899)
T ss_pred h----CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHH
Confidence 4 566688888999999999999999999887 3345677888888999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 469 VILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 469 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
..++.+|...|+ ++|.+.++++.+.
T Consensus 808 ~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 808 NNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 999999999999 8899999998765
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-29 Score=205.48 Aligned_cols=106 Identities=61% Similarity=1.008 Sum_probs=95.5
Q ss_pred ceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCccccccCchhhH--------HHHhhhhhHHHHH
Q 006705 501 GRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQK--------EKVLLGHSEKLAL 572 (634)
Q Consensus 501 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~--------~~~~~~~~~~la~ 572 (634)
|+||+++ |.|++|+.+||+. ++..++...||.|+...++++++++.+ +..+..||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6799876 9999999999987 455667789999999998888777654 5578999999999
Q ss_pred HHcccCCCCCCcEEEEecc-ccCccchhhhHHHhhhcCceeEEccCCcccccc
Q 006705 573 TFGLIGTPEGAPIRVIKNL-RICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIV 624 (634)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~s~~~~~~~~~~d~~~~h~~~ 624 (634)
+||++++ +|+||+ |+|+|||+++|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 899999 999999999999999999999999999999996
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.7e-19 Score=206.43 Aligned_cols=474 Identities=12% Similarity=0.052 Sum_probs=275.6
Q ss_pred CccchhhhcccchhhhhcCCCCCCCChhhHHHhhhcCcHHHH---HHHHHHcCCCCCHhhH-----------------HH
Q 006705 4 PKKQSRAFSSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKA---LIEMATLGLEMRFEEY-----------------DT 63 (634)
Q Consensus 4 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~m~~~g~~p~~~~~-----------------~~ 63 (634)
.++.+.|.+.|....... +.+..........+.+.|+..++ +++..+. .|+...+ ..
T Consensus 41 ~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~--~P~~~~~~~~~~~~~~~~~~~~~~l~ 117 (1157)
T PRK11447 41 THREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQL--APDSNAYRSSRTTMLLSTPEGRQALQ 117 (1157)
T ss_pred hCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHhcCCchhhHHH
Confidence 456677777777655432 22233344555566677766543 4444433 3443322 22
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhCCCCChhHHH-HHHHHHHcCCChHHHHHHHhhcCC--C-CcchHHHHHHHHHhCCC
Q 006705 64 LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRT-RLIVFYNKCECLSDARKMFDEMRE--R-NVVSWTAMISAYSQKAH 139 (634)
Q Consensus 64 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~ 139 (634)
+.+.+...|++++|.+.++.+.+.. +++..... -+.......|+.++|.+.|+++.+ | +...+..+...+...|+
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~ 196 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGR 196 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCC
Confidence 2334667788888888888877653 23322111 111222234778888888877765 3 44467777777777888
Q ss_pred hhHHHHHHHHHHHCCC------------------C--------------CChhhH---------------------HHHH
Q 006705 140 SFEALNLFIRMLRSDT------------------E--------------PNEFTF---------------------ATVL 166 (634)
Q Consensus 140 ~~~A~~~~~~m~~~g~------------------~--------------p~~~t~---------------------~~ll 166 (634)
+++|+..|+++..... . |+...+ ....
T Consensus 197 ~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G 276 (1157)
T PRK11447 197 RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQG 276 (1157)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHH
Confidence 8888888777644210 0 110000 0112
Q ss_pred HHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC--CC---hhhHHHH----------
Q 006705 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE--RD---VVSCTAI---------- 231 (634)
Q Consensus 167 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~---~~~~~~l---------- 231 (634)
..+...|++++|...++.+++.. +.+..++..|...|.+.|++++|+..|++..+ |+ ...|..+
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 23456678888888888887764 44677777888888888888888888876643 21 1123222
Q ss_pred --HHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 006705 232 --ISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309 (634)
Q Consensus 232 --i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g 309 (634)
...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.++.+++.. +.+...+..+...|. .+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hc
Confidence 334667788888888888887753 2344556667777788888888888888887764 333444444444443 23
Q ss_pred CHHHHHHHHhhcCCCC------------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHhccC
Q 006705 310 SLTYSRRVFDNMSERT------------VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD-SVTYLAVLSGCSHGG 376 (634)
Q Consensus 310 ~~~~A~~~f~~m~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd-~~t~~~ll~a~~~~g 376 (634)
+.++|...++.+.... ...+..+...+...|++++|++.|++..+. .|+ ...+..+...+...|
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~---~P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL---DPGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcC
Confidence 4455555544433210 112233344445555555555555555543 232 234444455555555
Q ss_pred cHHHHHHHHHHhhhccCCccCChHHH--------------------------------------------HHHHHHHHHc
Q 006705 377 MEDRGLAVFHEIVDCKDGFEPEIEHY--------------------------------------------GCVVDMLGRA 412 (634)
Q Consensus 377 ~~~~a~~~~~~~~~~~~~~~p~~~~~--------------------------------------------~~li~~~~~~ 412 (634)
++++|...++.+.+.. +.+...+ ..+.+.+...
T Consensus 510 ~~~~A~~~l~~al~~~---P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 510 QRSQADALMRRLAQQK---PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred CHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 5555555555554321 1111111 1233445556
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 413 GRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 413 g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
|+.++|.++++.-| ++...+..+...+...|++++|...++++++.+|+++..+..++.+|...|++++|.+.++...
T Consensus 587 G~~~eA~~~l~~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 587 GKEAEAEALLRQQP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred CCHHHHHHHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 66666666666432 3444556666777777888888888888888888877777788888888888888888777665
Q ss_pred h
Q 006705 493 E 493 (634)
Q Consensus 493 ~ 493 (634)
+
T Consensus 665 ~ 665 (1157)
T PRK11447 665 A 665 (1157)
T ss_pred c
Confidence 4
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.1e-19 Score=203.20 Aligned_cols=417 Identities=9% Similarity=0.011 Sum_probs=329.2
Q ss_pred HHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC--CCc---chHHHH---------
Q 006705 65 LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE--RNV---VSWTAM--------- 130 (634)
Q Consensus 65 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~---~~~~~l--------- 130 (634)
-.++...|++++|...++..++.. +.+..++..|...|.+.|++++|+..|++..+ |+. ..|..+
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 345667899999999999999875 44778889999999999999999999998765 322 223333
Q ss_pred ---HHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Q 006705 131 ---ISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA 207 (634)
Q Consensus 131 ---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 207 (634)
...+.+.|++++|+..|++..... +.+...+..+...+...|++++|.+.++.+++.. +.+...+..+...|. .
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-h
Confidence 345678999999999999998863 2345667778888999999999999999999875 445666777888775 4
Q ss_pred CCHHHHHHHHccCCCCC------------hhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccC-hhhHHHHHHHHhccc
Q 006705 208 GRIHEARGVFECLPERD------------VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISN-YVTYASVLTALSGLA 274 (634)
Q Consensus 208 g~~~~A~~~~~~m~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~ 274 (634)
++.++|..+++.+.... ...+..+...+...|++++|++.|++..+. .|+ ...+..+...+.+.|
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 67899999998876421 223555677888999999999999999875 454 456677888899999
Q ss_pred chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC----Ch---------hhHHHHHHHHHhcCC
Q 006705 275 ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER----TV---------ISWNAMLVGYSKHGM 341 (634)
Q Consensus 275 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~----~~---------~~~~~li~~~~~~g~ 341 (634)
++++|...++.+++.. +.+...+..+...+.+.|+.++|...++.+... +. ..+..+...+...|+
T Consensus 510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 9999999999998764 345555555666678899999999999988642 11 112345677889999
Q ss_pred hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHH
Q 006705 342 GREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421 (634)
Q Consensus 342 ~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 421 (634)
.++|+++++ . .+++...+..+...+.+.|++++|+..|+.+.+. -+.+...+..++..|...|++++|++.
T Consensus 589 ~~eA~~~l~---~---~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 589 EAEAEALLR---Q---QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred HHHHHHHHH---h---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999987 2 2345566777888899999999999999999964 244688999999999999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCc------hHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 422 IKNM-PFEP-TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAG------NYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 422 ~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
++.. ...| +...+..+..++...|++++|...++++.+..|+++. .+..++.++...|++++|.+.++....
T Consensus 660 l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 660 LAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9987 2334 4556777888899999999999999999988766443 455678999999999999999998853
Q ss_pred -CCCc
Q 006705 494 -KAVT 497 (634)
Q Consensus 494 -~~~~ 497 (634)
.|+.
T Consensus 740 ~~~~~ 744 (1157)
T PRK11447 740 ASGIT 744 (1157)
T ss_pred hcCCC
Confidence 3443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.1e-19 Score=173.46 Aligned_cols=379 Identities=16% Similarity=0.158 Sum_probs=256.0
Q ss_pred ChhHHHHHHHHHHcCCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHH-H
Q 006705 92 PVYLRTRLIVFYNKCECLSDARKMFDEMRE---RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVL-T 167 (634)
Q Consensus 92 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~ 167 (634)
-..+|+.+.+.+-..|++++|..+++.+.+ ..+..|-.+..++...|+.+.|...|.+.++ +.|+.+...+-+ .
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgn 192 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhH
Confidence 345666677777777777777777776654 3556777777777777777777777777665 455544333322 2
Q ss_pred HHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCCCC---hhhHHHHHHHHHhcCChHHH
Q 006705 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERD---VVSCTAIISGYAQLGLDEEA 244 (634)
Q Consensus 168 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A 244 (634)
..-..|.+++|...+-++++.. +.-..+|+.|...+-..|++..|+..|++...-| ..+|-.|...|...+.+++|
T Consensus 193 Llka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHH
Confidence 2334567777777777766653 2234566777777777777777777777765533 24666677777777777777
Q ss_pred HHHHHHHhhcCCccCh-hhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 006705 245 IELFRKLQVEGMISNY-VTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE 323 (634)
Q Consensus 245 ~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~ 323 (634)
+..|.+.... .|+. +.+..+...|-..|.++.|...+++.++.. +.-+..|+.|..++-..|++.+|.+.+.+...
T Consensus 272 vs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 272 VSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 7777766653 4443 455556566667777777777777777654 33356777777777777777777777776653
Q ss_pred --C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCC-
Q 006705 324 --R-TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS-VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE- 398 (634)
Q Consensus 324 --~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~- 398 (634)
| -..+.+.|...|...|.+++|..+|....+ +.|.- ..++.|...|-+.|++++|..-+++.. .+.|+
T Consensus 349 l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal----rI~P~f 421 (966)
T KOG4626|consen 349 LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL----RIKPTF 421 (966)
T ss_pred hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH----hcCchH
Confidence 2 345667777777777777777777777664 34543 566777777777777777777777777 45665
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 006705 399 IEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPT-AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYA 476 (634)
Q Consensus 399 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 476 (634)
...|+.+...|-..|+.+.|.+.+.+. .+.|. ....+.|.+.|...|+..+|...++.+++++|+.+.+|..++.++-
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHH
Confidence 566777777777777777777777665 44554 3456677777777777777777777777777777777777666655
Q ss_pred hcCCcHH
Q 006705 477 SAGRWED 483 (634)
Q Consensus 477 ~~g~~~~ 483 (634)
--.+|.+
T Consensus 502 ~vcdw~D 508 (966)
T KOG4626|consen 502 IVCDWTD 508 (966)
T ss_pred HHhcccc
Confidence 4444444
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.1e-19 Score=173.47 Aligned_cols=419 Identities=13% Similarity=0.129 Sum_probs=336.5
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC---CCcchHHHHHHHHHhC
Q 006705 61 YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE---RNVVSWTAMISAYSQK 137 (634)
Q Consensus 61 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 137 (634)
...|..-.-+.|++++|.+--..+-+.+ +.+....-.+-..|....+++....--....+ .-..+|..+.+.+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 3444455567788888887554444332 22222222233456666666554433222222 2456899999999999
Q ss_pred CChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchH-HHHHHHHHHHhcCCHHHHHH
Q 006705 138 AHSFEALNLFIRMLRSDTEP-NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIY-VGSSLLDMYAKAGRIHEARG 215 (634)
Q Consensus 138 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~ 215 (634)
|+.++|+.+++.|.+. +| ....|..+..++...|+.+.|.+.+...++. .|+.. +.+.+.+.....|++++|..
T Consensus 130 g~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 130 GQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred chHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 9999999999999984 55 4668999999999999999999999999875 45433 34455666667899999999
Q ss_pred HHccCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccCh-hhHHHHHHHHhcccchHHHHHHHHHHHHcCC
Q 006705 216 VFECLPE--R-DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNY-VTYASVLTALSGLAALGHGKQVHSHVLRFEI 291 (634)
Q Consensus 216 ~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~ 291 (634)
.+.+..+ | =.+.|+.|...+-.+|+...|+..|++.... .|+- ..|..+-..+...+.++.|...+.......
T Consensus 206 cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr- 282 (966)
T KOG4626|consen 206 CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR- 282 (966)
T ss_pred HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-
Confidence 9877654 3 3468999999999999999999999999874 5653 468888888888888999988888877654
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC-HHHHHH
Q 006705 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE--R-TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD-SVTYLA 367 (634)
Q Consensus 292 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd-~~t~~~ 367 (634)
+....++..|...|-..|.++.|+..+++..+ | -...|+.|..++-..|+..+|...|.+.... .|+ ..+.+.
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l---~p~hadam~N 359 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL---CPNHADAMNN 359 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh---CCccHHHHHH
Confidence 44567778888889999999999999999875 3 3579999999999999999999999999875 454 477889
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhccCCccCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhc
Q 006705 368 VLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE-IEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTA-AILGSLLGACRVH 444 (634)
Q Consensus 368 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~ 444 (634)
|...+...|.+++|..+|....+ +.|. ....+.|...|-..|++++|+..+++. .++|+. ..++.+...|...
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~----v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALE----VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHh----hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHh
Confidence 99999999999999999999985 3444 567899999999999999999999986 777874 4788999999999
Q ss_pred CCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 445 YNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 445 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
|+...|.+.+.+++.++|.-..++..|..+|-.+|+..+|+.-++...+.
T Consensus 436 g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred hhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 99999999999999999998899999999999999999999999998754
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.4e-19 Score=182.82 Aligned_cols=290 Identities=13% Similarity=0.107 Sum_probs=167.6
Q ss_pred hccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCCC-C------hhhHHHHHHHHHhcCChH
Q 006705 170 AGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER-D------VVSCTAIISGYAQLGLDE 242 (634)
Q Consensus 170 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-~------~~~~~~li~~~~~~g~~~ 242 (634)
...|+++.|...+..+++.+ +.+..++..+...|.+.|++++|..+++.+... + ...|..+...|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34455555555555555542 223344555555555555555555555544321 1 123444455555555555
Q ss_pred HHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 006705 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS 322 (634)
Q Consensus 243 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 322 (634)
+|+.+|.++.+. . +.+..+++.++..|.+.|++++|.+.|+.+.
T Consensus 125 ~A~~~~~~~l~~-----------------------------------~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (389)
T PRK11788 125 RAEELFLQLVDE-----------------------------------G-DFAEGALQQLLEIYQQEKDWQKAIDVAERLE 168 (389)
T ss_pred HHHHHHHHHHcC-----------------------------------C-cchHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 555555555443 1 2233444444555555555555555555443
Q ss_pred CCC--------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCC
Q 006705 323 ERT--------VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG 394 (634)
Q Consensus 323 ~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 394 (634)
+.+ ...|..+...+.+.|++++|...|+++.+. .+.+...+..+...+.+.|++++|.++++.+.+. +
T Consensus 169 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~ 244 (389)
T PRK11788 169 KLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ--D 244 (389)
T ss_pred HhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--C
Confidence 211 112344555666677777777777776654 1223445556666677777777777777776643 1
Q ss_pred ccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHH
Q 006705 395 FEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSN 473 (634)
Q Consensus 395 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 473 (634)
-.....+++.++.+|.+.|++++|.+.++++ ...|+...+..+...+...|++++|...++++.+..|++. .+..++.
T Consensus 245 p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~ 323 (389)
T PRK11788 245 PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLD 323 (389)
T ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHH
Confidence 1112345666777777777777777777765 3345555556666777777777777777777777777653 4555555
Q ss_pred HHhh---cCCcHHHHHHHHHHhhCCCccCCc
Q 006705 474 LYAS---AGRWEDVTRVRELMKEKAVTKDPG 501 (634)
Q Consensus 474 ~~~~---~g~~~~A~~~~~~m~~~~~~~~~~ 501 (634)
.+.. .|+.+++..+++.|.+++++++|.
T Consensus 324 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 324 YHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 5443 458889999999999888888884
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.1e-19 Score=181.51 Aligned_cols=291 Identities=12% Similarity=0.080 Sum_probs=182.8
Q ss_pred HhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC-CC------cchHHHHHHHHHhCCCh
Q 006705 68 CVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE-RN------VVSWTAMISAYSQKAHS 140 (634)
Q Consensus 68 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~------~~~~~~li~~~~~~g~~ 140 (634)
+...|+++.|...+..+.+.+ +.+..++..+...|.+.|++++|..+++.+.. ++ ...|..+...|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 345567777777777777664 33455677777777777777777777776654 21 13466677777777777
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCc----hHHHHHHHHHHHhcCCHHHHHHH
Q 006705 141 FEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH----IYVGSSLLDMYAKAGRIHEARGV 216 (634)
Q Consensus 141 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y~~~g~~~~A~~~ 216 (634)
++|+.+|+++.... +++..++..+...+...|++++|.+.+..+.+.+..+. ...+..+...|.+.|++++|.+.
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 77777777776542 23556677777777777777777777777766543221 12344566666777777777777
Q ss_pred HccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCC
Q 006705 217 FECLPE---RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPS 293 (634)
Q Consensus 217 ~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~ 293 (634)
|+++.+ .+...+..+...|.+.|++++|.++|+++...+......++..+..++...|++++|...+..+.+.. |
T Consensus 203 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p 280 (389)
T PRK11788 203 LKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--P 280 (389)
T ss_pred HHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C
Confidence 776543 23446666667777777777777777777654322223445566666666666666666666666543 3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcC--CCChhhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCCHH
Q 006705 294 YVVLQNSLIDMYSKCGSLTYSRRVFDNMS--ERTVISWNAMLVGYSK---HGMGREVVELFNLMREENKVKPDSV 363 (634)
Q Consensus 294 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~g~~pd~~ 363 (634)
+...+..++..|.+.|++++|..+|+++. .|+..+++.++..+.. .|+.++++.+|++|.+. +++|++.
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~-~~~~~p~ 354 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE-QLKRKPR 354 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH-HHhCCCC
Confidence 33444666666666666666666666554 2555566665555443 34666666666666665 5555554
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-17 Score=179.09 Aligned_cols=419 Identities=12% Similarity=0.014 Sum_probs=290.2
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC---CCcchHHHHHHHHHhC
Q 006705 61 YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE---RNVVSWTAMISAYSQK 137 (634)
Q Consensus 61 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 137 (634)
+...-..+.+.|+++.|...|+..++. .|+...|..+..+|.+.|++++|...++...+ .+...|..+..+|...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 444556677788888888888888765 46677788888888888888888888887655 2455788888888888
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 006705 138 AHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF 217 (634)
Q Consensus 138 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 217 (634)
|++++|+.-|......+.. +......++..... ..+........+.. +++...+..+.+ |........+..-+
T Consensus 208 g~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGL 280 (615)
T ss_pred CCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhh
Confidence 8888888887766543211 11111111111111 11222222222221 222222222222 22221111111112
Q ss_pred ccCCCCCh---hhHHHHHHHH---HhcCChHHHHHHHHHHhhcC-CccC-hhhHHHHHHHHhcccchHHHHHHHHHHHHc
Q 006705 218 ECLPERDV---VSCTAIISGY---AQLGLDEEAIELFRKLQVEG-MISN-YVTYASVLTALSGLAALGHGKQVHSHVLRF 289 (634)
Q Consensus 218 ~~m~~~~~---~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g-~~p~-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~ 289 (634)
+...+-+. ..+..+...+ ...+++++|++.|++....+ ..|+ ...+..+...+...|++++|...+...++.
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 11111111 1111111111 23468999999999998764 2343 345667777778899999999999999887
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHH
Q 006705 290 EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYL 366 (634)
Q Consensus 290 ~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~ 366 (634)
. +.+...+..+...|...|++++|...|++..+ .+...|..+...+...|++++|+..|++..+. .+.+...+.
T Consensus 361 ~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~ 437 (615)
T TIGR00990 361 D-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHI 437 (615)
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHH
Confidence 4 34466788889999999999999999998753 36788999999999999999999999999875 233456777
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-------H-HHHHH
Q 006705 367 AVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTA-------A-ILGSL 437 (634)
Q Consensus 367 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-------~-~~~~l 437 (634)
.+..++.+.|++++|...|+...+. .+.+...++.+...|...|++++|++.|++. ...|+. . .++..
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a 514 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKN---FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKA 514 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHH
Confidence 7888899999999999999999863 3446789999999999999999999999985 333321 1 12222
Q ss_pred HHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 438 LGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 438 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
+..+...|++++|...++++++++|++...+..++.+|.+.|++++|.+.+++..+.
T Consensus 515 ~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 515 LALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 233445699999999999999999998888999999999999999999999998653
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6e-16 Score=171.97 Aligned_cols=476 Identities=9% Similarity=-0.001 Sum_probs=323.2
Q ss_pred ccchhhhcccchhhhhcCCCCCCCChhhHH--------HhhhcCcHHHHHHHHHHcCCCCCHhhHHHH-HHHHhccCCch
Q 006705 5 KKQSRAFSSLTFTQQQLTVPSFPPNPQNLK--------TLCSNGQLTKALIEMATLGLEMRFEEYDTL-LNACVNQRTLR 75 (634)
Q Consensus 5 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~i~--------~~~~~~~~~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~~~~~ 75 (634)
+++++|...++.+....+ -+...+..+.. .|.+.+.+.+.++ .......|+..+.... .+.|.+.++++
T Consensus 122 ~~~~kA~~~ye~l~~~~P-~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~ 199 (987)
T PRK09782 122 PVEVKSVTTVEELLAQQK-ACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWS 199 (987)
T ss_pred ccChhHHHHHHHHHHhCC-CChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHH
Confidence 445566666766544321 11222222222 2666666667776 4444455555555555 88899999999
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHc-CCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 006705 76 GGQRVHAHMIKTCYRPPVYLRTRLIVFYNK-CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD 154 (634)
Q Consensus 76 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 154 (634)
.|..++..+.+.+ +.+..-...|-..|.. .++ +.|..+++...+.|...+.++...|.+.|+.++|..+++++...-
T Consensus 200 ~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~ 277 (987)
T PRK09782 200 QADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLF 277 (987)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence 9999999999987 3445556667778877 366 888888776555688899999999999999999999999886542
Q ss_pred CC-CChhhHHHHH------------------------------HHHhccCCcHHHHHHHH--------------------
Q 006705 155 TE-PNEFTFATVL------------------------------TSCAGAFGFELGKQIHS-------------------- 183 (634)
Q Consensus 155 ~~-p~~~t~~~ll------------------------------~~~~~~~~~~~a~~~~~-------------------- 183 (634)
.. |+..++...+ ..+.+.++++.+.++.+
T Consensus 278 ~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 357 (987)
T PRK09782 278 TTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRN 357 (987)
T ss_pred cCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCc
Confidence 22 3333332222 22233333333333211
Q ss_pred ---------HHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC--C----ChhhHHHHHHHHHhcCC---hHHHH
Q 006705 184 ---------LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE--R----DVVSCTAIISGYAQLGL---DEEAI 245 (634)
Q Consensus 184 ---------~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~----~~~~~~~li~~~~~~g~---~~~A~ 245 (634)
.+.+.. +-+....--+.-...+.|+.++|.++|+..-. + +...-+-++..|.+.+. ..+++
T Consensus 358 ~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 436 (987)
T PRK09782 358 KAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVA 436 (987)
T ss_pred hhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHH
Confidence 111110 11222222233344567888888888887654 1 22334466777777765 34443
Q ss_pred HH------------HHHH----------hh-cCC-cc--ChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHH
Q 006705 246 EL------------FRKL----------QV-EGM-IS--NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299 (634)
Q Consensus 246 ~~------------~~~m----------~~-~g~-~p--~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~ 299 (634)
.+ ..+. .. .+. ++ +...+..+..++.. ++..+|...+....... |+.....
T Consensus 437 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L 513 (987)
T PRK09782 437 ILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHR 513 (987)
T ss_pred HhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHH
Confidence 33 1111 11 112 22 34455555555555 78888998777777654 4443344
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCc
Q 006705 300 SLIDMYSKCGSLTYSRRVFDNMSE--RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377 (634)
Q Consensus 300 ~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~ 377 (634)
.+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...|++..+. . +++...+..+.......|+
T Consensus 514 ~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l-~-P~~~~l~~~La~~l~~~Gr 591 (987)
T PRK09782 514 AVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR-G-LGDNALYWWLHAQRYIPGQ 591 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHhCCC
Confidence 445555789999999999998763 45556777788899999999999999999876 2 2333334444445566799
Q ss_pred HHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHH
Q 006705 378 EDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEP-TAAILGSLLGACRVHYNVDIGEFVGQ 455 (634)
Q Consensus 378 ~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~ 455 (634)
+++|...++...+ +.|+...|..+...+.+.|++++|+..+++. ...| +...+..+..++...|+.++|...++
T Consensus 592 ~~eAl~~~~~AL~----l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~ 667 (987)
T PRK09782 592 PELALNDLTRSLN----IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLE 667 (987)
T ss_pred HHHHHHHHHHHHH----hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999984 4678889999999999999999999999987 3444 45567777789999999999999999
Q ss_pred HHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 456 RLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 456 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
++++..|+++..+..++.+|...|++++|...+++..+.
T Consensus 668 ~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 668 RAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999754
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.3e-16 Score=172.37 Aligned_cols=471 Identities=11% Similarity=0.003 Sum_probs=324.5
Q ss_pred CccchhhhcccchhhhhcCCCCCCCChhhHHHhhhcCcHHHHHHHHHHc-CCCCCHhhHHHHHHHHhccCCchHHHHHHH
Q 006705 4 PKKQSRAFSSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATL-GLEMRFEEYDTLLNACVNQRTLRGGQRVHA 82 (634)
Q Consensus 4 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 82 (634)
.|++++|++.|+......|.- ...+..+...|.+.|+..++.....+. ...|+...|..++... ++.++|..+++
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye 132 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVE 132 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHH
Confidence 588899999999886654333 555677888889999887665544432 2456655555555333 88889999999
Q ss_pred HHHHhCCCCChhHHHHHHHH--------HHcCCChHHHHHHHhhcCCCC--cchHHHH-HHHHHhCCChhHHHHHHHHHH
Q 006705 83 HMIKTCYRPPVYLRTRLIVF--------YNKCECLSDARKMFDEMRERN--VVSWTAM-ISAYSQKAHSFEALNLFIRML 151 (634)
Q Consensus 83 ~~~~~g~~~~~~~~~~li~~--------y~~~g~~~~A~~~~~~~~~~~--~~~~~~l-i~~~~~~g~~~~A~~~~~~m~ 151 (634)
.+.+.. +.+..++..+... |.+.+....|++ .....|+ ....... ...|.+.|++++|++++.++.
T Consensus 133 ~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 133 ELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 999885 4445566666665 777766666666 3333343 4334444 889999999999999999999
Q ss_pred HCCCCCChhhHHHHHHHHhc-cCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC-----CCh
Q 006705 152 RSDTEPNEFTFATVLTSCAG-AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE-----RDV 225 (634)
Q Consensus 152 ~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~~ 225 (634)
+.+.. +..-...+-.++.. .++ +.+..++.. .+..+..+..++++.|.+.|+.++|.+++++++. |+.
T Consensus 210 k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~ 283 (987)
T PRK09782 210 QQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQE 283 (987)
T ss_pred hcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCcc
Confidence 97533 33335555556666 366 666666442 3446888899999999999999999999987752 110
Q ss_pred hhH--H----------------------------HHHH------------------------------------------
Q 006705 226 VSC--T----------------------------AIIS------------------------------------------ 233 (634)
Q Consensus 226 ~~~--~----------------------------~li~------------------------------------------ 233 (634)
.+| + .++.
T Consensus 284 ~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 363 (987)
T PRK09782 284 KSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALR 363 (987)
T ss_pred HHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHH
Confidence 000 0 0011
Q ss_pred ---------------------HHHhcCChHHHHHHHHHHhhc--CCccChhhHHHHHHHHhcccch---HHH--------
Q 006705 234 ---------------------GYAQLGLDEEAIELFRKLQVE--GMISNYVTYASVLTALSGLAAL---GHG-------- 279 (634)
Q Consensus 234 ---------------------~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~---~~a-------- 279 (634)
...+.|+.++|.++|+..... .-.++.....-++..+...+.+ ..+
T Consensus 364 ~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 443 (987)
T PRK09782 364 LARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLP 443 (987)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccc
Confidence 123345566666666655441 1122222333555555555442 112
Q ss_pred --------------HHHHHHHHHc-CC-CC--chhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHH--HHhc
Q 006705 280 --------------KQVHSHVLRF-EI-PS--YVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG--YSKH 339 (634)
Q Consensus 280 --------------~~i~~~~~~~-~~-~~--~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~--~~~~ 339 (634)
......+.+. +. ++ +...+..+..++.. |+.++|...|.+.....+..++.+..+ +.+.
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~ 522 (987)
T PRK09782 444 LAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQV 522 (987)
T ss_pred cchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 1111112111 11 33 56677778877776 788889987777654323345554444 4689
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHH
Q 006705 340 GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419 (634)
Q Consensus 340 g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 419 (634)
|++++|...|+++... .|+...+..+..++.+.|+.++|...++...+. . ++....+..+...+.+.|++++|.
T Consensus 523 Gr~eeAi~~~rka~~~---~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~-P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 523 EDYATALAAWQKISLH---DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--G-LGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred CCHHHHHHHHHHHhcc---CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--C-CccHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999997653 455566667777889999999999999999864 2 333344444444555669999999
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 420 EFIKNM-PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 420 ~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
..+++. ...|+...|..+..++.+.|+.++|+..++++.+++|+++..+..++.++...|++++|.+.++...+.
T Consensus 597 ~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 597 NDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999986 556888899999999999999999999999999999999999999999999999999999999998764
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-16 Score=172.87 Aligned_cols=352 Identities=10% Similarity=-0.004 Sum_probs=263.2
Q ss_pred cCCChHHHHHHHhhcCC------CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHH
Q 006705 105 KCECLSDARKMFDEMRE------RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178 (634)
Q Consensus 105 ~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 178 (634)
+..+++.-.-.|..-++ -+..-.-.++..+.+.|++++|+.+++..+.....+ ...+..++.++...|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHH
Confidence 45566666666665554 122334456677888899999999988888764333 33444555666678999999
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 006705 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE---RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG 255 (634)
Q Consensus 179 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 255 (634)
...++.+++.. +.+...+..+...+.+.|++++|...|++... .+...|..+...+...|++++|...++.+....
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 99999888765 55667778888888999999999998887754 356678888888999999999999888886653
Q ss_pred CccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHH
Q 006705 256 MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAM 332 (634)
Q Consensus 256 ~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~l 332 (634)
|+.......+..+...|++++|...+..+++....++......+...+.+.|++++|...|++... .+...+..+
T Consensus 175 --P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 252 (656)
T PRK15174 175 --PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL 252 (656)
T ss_pred --CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 333222222334677889999999888887765444445555667788889999999999988764 356778888
Q ss_pred HHHHHhcCChHH----HHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHH
Q 006705 333 LVGYSKHGMGRE----VVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408 (634)
Q Consensus 333 i~~~~~~g~~~~----A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~ 408 (634)
...|.+.|++++ |+..|++..+. .+.+...+..+...+...|++++|...++...+.. +.+...+..+...
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~---P~~~~a~~~La~~ 327 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH---PDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHH
Confidence 889999999885 78999988875 23345678888888999999999999999988642 3346677788899
Q ss_pred HHHcCCHHHHHHHHHhC-CCCCCHHHHH-HHHHHHHhcCCchHHHHHHHHHhccCCCCC
Q 006705 409 LGRAGRVGEALEFIKNM-PFEPTAAILG-SLLGACRVHYNVDIGEFVGQRLMEIEPENA 465 (634)
Q Consensus 409 ~~~~g~~~~A~~~~~~m-~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 465 (634)
|.+.|++++|.+.++++ ...|+...+. .+..++...|+.++|...++++.+..|++.
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 99999999999999887 3456654443 345678899999999999999999988853
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.4e-16 Score=173.82 Aligned_cols=400 Identities=7% Similarity=-0.019 Sum_probs=215.6
Q ss_pred hhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC---CCcchHHHHHHHHH
Q 006705 59 EEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE---RNVVSWTAMISAYS 135 (634)
Q Consensus 59 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 135 (634)
.-..-.+......|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++..+ .+...+..+...+.
T Consensus 16 ~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~ 94 (765)
T PRK10049 16 NQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 333444455556677777777777666522 33444566677777777777777777776432 34455666667777
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 006705 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215 (634)
Q Consensus 136 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 215 (634)
..|++++|+..+++..... +.+.. +..+..++...|+.++|...++.+++.. +.+..++..+..++.+.|..+.|.+
T Consensus 95 ~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHH
Confidence 7777777777777776641 22333 5556666667777777777777777654 3344555556666666777777777
Q ss_pred HHccCCCCChh--------hHHHHHHHHH-----hcCCh---HHHHHHHHHHhhc-CCccChh-hHHHHHHHHhcccchH
Q 006705 216 VFECLPERDVV--------SCTAIISGYA-----QLGLD---EEAIELFRKLQVE-GMISNYV-TYASVLTALSGLAALG 277 (634)
Q Consensus 216 ~~~~m~~~~~~--------~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p~~~-t~~~ll~~~~~~~~~~ 277 (634)
.++.... ++. ....++..+. ..+++ ++|++.++.+.+. ...|+.. .+...
T Consensus 172 ~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a----------- 239 (765)
T PRK10049 172 AIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRA----------- 239 (765)
T ss_pred HHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH-----------
Confidence 7766554 211 1111111111 11112 4444444444432 1112111 01000
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC--hh--hHHHHHHHHHhcCChHHHHHHHHHHH
Q 006705 278 HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT--VI--SWNAMLVGYSKHGMGREVVELFNLMR 353 (634)
Q Consensus 278 ~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~--~~--~~~~li~~~~~~g~~~~A~~~~~~m~ 353 (634)
....+..+...|++++|+..|+.+.+.+ .. .--.+...|...|++++|+..|+++.
T Consensus 240 --------------------~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l 299 (765)
T PRK10049 240 --------------------RIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELF 299 (765)
T ss_pred --------------------HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 0000112234455555555555554321 01 11113445555666666666666554
Q ss_pred HcCCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccC---------CccCC---hHHHHHHHHHHHHcCCHHHHH
Q 006705 354 EENKVKP--DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD---------GFEPE---IEHYGCVVDMLGRAGRVGEAL 419 (634)
Q Consensus 354 ~~~g~~p--d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~---------~~~p~---~~~~~~li~~~~~~g~~~~A~ 419 (634)
......+ .......+..++...|++++|..+++.+.+..+ .-.|+ ...+..+...+...|++++|+
T Consensus 300 ~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~ 379 (765)
T PRK10049 300 YHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAE 379 (765)
T ss_pred hcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHH
Confidence 4300000 012333444455556666666666665554210 00122 223455666666777777777
Q ss_pred HHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 420 EFIKNM--PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 420 ~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
++++++ ..+.+...+..+...+...|++++|+..++++++++|+++..+..++..+.+.|++++|.++++.+.+.
T Consensus 380 ~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 380 MRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 777765 122345566666677777777777777777777777777777777777777777777777777776543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3e-15 Score=166.36 Aligned_cols=405 Identities=10% Similarity=0.014 Sum_probs=244.1
Q ss_pred ChhhHHHhhhcCcHHHHHHHHHHcC-CCC-CHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcC
Q 006705 29 NPQNLKTLCSNGQLTKALIEMATLG-LEM-RFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKC 106 (634)
Q Consensus 29 ~~~~i~~~~~~~~~~~~~~~m~~~g-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 106 (634)
....+......|+..++.....+.. ..| +...+..+..++...|++++|..+++..++.. +.+...+..+...+.+.
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 3445556666777665543333322 233 44468889999999999999999999998874 44566777888999999
Q ss_pred CChHHHHHHHhhcCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCCcHHHHHHH
Q 006705 107 ECLSDARKMFDEMRE--R-NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN-EFTFATVLTSCAGAFGFELGKQIH 182 (634)
Q Consensus 107 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~ 182 (634)
|++++|...+++..+ | +.. |..+...+...|++++|+..++++... .|+ ...+..+..++...+..+.|...+
T Consensus 97 g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 97 GQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 999999999998765 3 455 888999999999999999999999985 454 444555666777888899999888
Q ss_pred HHHHHhCCCCch------HHHHHHHHHHH-----hcCCH---HHHHHHHccCCC-----CChh-h----HHHHHHHHHhc
Q 006705 183 SLIIKSNFESHI------YVGSSLLDMYA-----KAGRI---HEARGVFECLPE-----RDVV-S----CTAIISGYAQL 238 (634)
Q Consensus 183 ~~~~~~g~~~~~------~~~~~li~~y~-----~~g~~---~~A~~~~~~m~~-----~~~~-~----~~~li~~~~~~ 238 (634)
+.+.+ .|+. .....++..+. ..+++ ++|++.++.+.. |+.. . ....+..+...
T Consensus 174 ~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~ 250 (765)
T PRK10049 174 DDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR 250 (765)
T ss_pred HhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence 76653 2221 12222333332 22234 677777776652 2211 1 11113445677
Q ss_pred CChHHHHHHHHHHhhcCCc-cChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCC---chhHHHHHHHHHHhcCCHHHH
Q 006705 239 GLDEEAIELFRKLQVEGMI-SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPS---YVVLQNSLIDMYSKCGSLTYS 314 (634)
Q Consensus 239 g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A 314 (634)
|++++|+..|+++.+.+.+ |+. ....+..++...|++++|...+..+.+..... .......|..++.+.|++++|
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA 329 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGA 329 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHH
Confidence 8999999999999877532 322 12223556667777777777777666543111 012233344444555555555
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHhhhc
Q 006705 315 RRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS---VTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391 (634)
Q Consensus 315 ~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 391 (634)
..+++.+.+.+.... .++. .. .-.|+. ..+..+...+...|++++|+..++++...
T Consensus 330 ~~~l~~~~~~~P~~~-----------------~~~~---~~-~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~ 388 (765)
T PRK10049 330 LTVTAHTINNSPPFL-----------------RLYG---SP-TSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN 388 (765)
T ss_pred HHHHHHHhhcCCceE-----------------eecC---CC-CCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555554442110000 0000 00 011221 12334444555666666666666666542
Q ss_pred cCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCC
Q 006705 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPT-AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENA 465 (634)
Q Consensus 392 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 465 (634)
.+.+...+..+...+...|++++|++.+++. ...|+ ...+..+...+...+++++|+.+++++++..|+++
T Consensus 389 ---~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 389 ---APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 2334556666666666666666666666665 33343 33444455556666666666666666666666654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-15 Score=164.99 Aligned_cols=323 Identities=11% Similarity=0.018 Sum_probs=195.0
Q ss_pred hhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC--C-CcchHHHHHHHHH
Q 006705 59 EEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE--R-NVVSWTAMISAYS 135 (634)
Q Consensus 59 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~ 135 (634)
.....++..+.+.|+++.|..+++..+.....+ ......++......|++++|...|+++.+ | +...|..+...+.
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 334556667777788888888888777765333 33344444555567888888888877754 2 4456777777777
Q ss_pred hCCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHH
Q 006705 136 QKAHSFEALNLFIRMLRSDTEPN-EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214 (634)
Q Consensus 136 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 214 (634)
+.|++++|+..|++.... .|+ ...+..+...+...|++++|...+..+..... .+...+..+ ..+.+.|++++|.
T Consensus 122 ~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 122 KSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHH
Confidence 778888888888777663 343 44566666677777777777777776665542 222233223 2356677777777
Q ss_pred HHHccCCCC----ChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHH----HHHHHHHH
Q 006705 215 GVFECLPER----DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH----GKQVHSHV 286 (634)
Q Consensus 215 ~~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~----a~~i~~~~ 286 (634)
..++.+... +...+..+...+.+.|++++|+..|++..... +.+...+..+...+...|++++ |...++.+
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 777665432 22233344556667777777777777776543 2234445555566666666654 56666666
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHH
Q 006705 287 LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE--R-TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363 (634)
Q Consensus 287 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~ 363 (634)
++.. +.+..++..+...+.+.|++++|...+++..+ | +...+..+...|.+.|++++|++.|+++... .|+..
T Consensus 277 l~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~---~P~~~ 352 (656)
T PRK15174 277 LQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLARE---KGVTS 352 (656)
T ss_pred HhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---Cccch
Confidence 6553 34555666666666666666666666665542 2 3445555666666666666666666666543 23332
Q ss_pred H-HHHHHHHHhccCcHHHHHHHHHHhhhc
Q 006705 364 T-YLAVLSGCSHGGMEDRGLAVFHEIVDC 391 (634)
Q Consensus 364 t-~~~ll~a~~~~g~~~~a~~~~~~~~~~ 391 (634)
. +..+..++...|+.++|...|+...+.
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 2 222344556666666666666666543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.6e-14 Score=153.93 Aligned_cols=428 Identities=10% Similarity=0.002 Sum_probs=246.2
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCCCCcchHHHH---HHHHHhC
Q 006705 61 YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAM---ISAYSQK 137 (634)
Q Consensus 61 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~ 137 (634)
|...+- ..+.|++..|...+.+..+........++ .++..+...|+.++|+..+++...|+...+..+ ...|...
T Consensus 38 y~~aii-~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 38 YDSLII-RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHH-HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence 443333 24667777777777777765321112233 677777777777777777777766544333332 3356666
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 006705 138 AHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF 217 (634)
Q Consensus 138 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 217 (634)
|++++|+++|+++.+.... +...+..++..+...++.++|.+.+..+.+. .|+...+..++..+...++..+|++.+
T Consensus 116 gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred CCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHH
Confidence 7777777777777764321 3445555566677777777777777777654 344444444444444455555577777
Q ss_pred ccCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhH------HHHHHHH-----hcccch---HHHH
Q 006705 218 ECLPE--R-DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTY------ASVLTAL-----SGLAAL---GHGK 280 (634)
Q Consensus 218 ~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~------~~ll~~~-----~~~~~~---~~a~ 280 (634)
+++.+ | +...+..+..+..+.|-...|+++..+-... ..|...-. ...++-- ....++ +.|.
T Consensus 193 ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al 271 (822)
T PRK14574 193 SEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL 271 (822)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence 77654 2 4455566667777777777776655432211 11111000 0011000 011122 2233
Q ss_pred HHHHHHHHc-C-CCCchhH-HHHH---HHHHHhcCCHHHHHHHHhhcCCCC----hhhHHHHHHHHHhcCChHHHHHHHH
Q 006705 281 QVHSHVLRF-E-IPSYVVL-QNSL---IDMYSKCGSLTYSRRVFDNMSERT----VISWNAMLVGYSKHGMGREVVELFN 350 (634)
Q Consensus 281 ~i~~~~~~~-~-~~~~~~~-~~~l---i~~~~~~g~~~~A~~~f~~m~~~~----~~~~~~li~~~~~~g~~~~A~~~~~ 350 (634)
.-++.+... + .++.... ..+. +-++.+.|+..++++.|+.+.... ..+--++.++|...+++++|+.+|+
T Consensus 272 a~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~ 351 (822)
T PRK14574 272 ADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILS 351 (822)
T ss_pred HHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 333333321 1 1222111 2222 334556677777777777777332 2234456677777777777777777
Q ss_pred HHHHcCC----CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccC-C--------ccCC---hHHHHHHHHHHHHcCC
Q 006705 351 LMREENK----VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-G--------FEPE---IEHYGCVVDMLGRAGR 414 (634)
Q Consensus 351 ~m~~~~g----~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~--------~~p~---~~~~~~li~~~~~~g~ 414 (634)
++....+ ..++......|.-++...+++++|..+++.+.+..+ . -.|+ ...+..++..+...|+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gd 431 (822)
T PRK14574 352 SLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALND 431 (822)
T ss_pred HHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCC
Confidence 7755411 112223345667777777777777777777775311 0 0122 2234445666777777
Q ss_pred HHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 415 VGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 415 ~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
+.+|++.++++ .-+-|...+..+...+...|.+..|+..++.+..++|++..+...++..+...|+|.+|.++.+...
T Consensus 432 l~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~ 511 (822)
T PRK14574 432 LPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVI 511 (822)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 77777777776 2234666677777777777777777777777777777777777777777777777777777776664
Q ss_pred hC
Q 006705 493 EK 494 (634)
Q Consensus 493 ~~ 494 (634)
+.
T Consensus 512 ~~ 513 (822)
T PRK14574 512 SR 513 (822)
T ss_pred hh
Confidence 43
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-14 Score=156.28 Aligned_cols=217 Identities=10% Similarity=-0.060 Sum_probs=176.7
Q ss_pred ccchHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhcCChHHHHH
Q 006705 273 LAALGHGKQVHSHVLRFE--IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE--R-TVISWNAMLVGYSKHGMGREVVE 347 (634)
Q Consensus 273 ~~~~~~a~~i~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~ 347 (634)
.+.+++|.+.+...++.+ .+.....++.+...|...|++++|...|++..+ | +..+|..+...+...|++++|+.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 467889999999998865 234566788888999999999999999998764 3 35688888999999999999999
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 006705 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-P 426 (634)
Q Consensus 348 ~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 426 (634)
.|++..+. -+.+...+..+...+...|++++|...|+...+. .+.+...+..+...+.+.|++++|+..|++. .
T Consensus 387 ~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l---~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 461 (615)
T TIGR00990 387 DFDKALKL--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL---DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK 461 (615)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999875 2345678888888999999999999999999863 2345777888999999999999999999986 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHH-------HHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 427 FEP-TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVI-------LSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 427 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~-------l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
..| +...|+.+...+...|++++|...+++++++.|++...+.. ....|...|++++|.+++++....
T Consensus 462 ~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 462 NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 333 56788889999999999999999999999999875443322 122334469999999999988654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.2e-13 Score=147.38 Aligned_cols=423 Identities=8% Similarity=-0.039 Sum_probs=311.2
Q ss_pred hhhcCcHHHHHHHHHH-cCCCCCH--hhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHH
Q 006705 36 LCSNGQLTKALIEMAT-LGLEMRF--EEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDA 112 (634)
Q Consensus 36 ~~~~~~~~~~~~~m~~-~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 112 (634)
..++|+...+++.+.+ ....|+. ..+ .++..+...|+.++|...++..... -.........+...|...|++++|
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4678887755544433 2245554 234 7888888889999999999998821 122233333345688889999999
Q ss_pred HHHHhhcCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhC
Q 006705 113 RKMFDEMRE--R-NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSN 189 (634)
Q Consensus 113 ~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 189 (634)
.++|+++.+ | |...+..++..|...++.++|++.++++... .|+...+..++..+...++..+|.+.++++++..
T Consensus 122 iely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 122 LALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 999999876 3 4566778889999999999999999999874 5666666444444545666666999999999885
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHccCCCC-Chhh--H--HHHHHHHH---------hcCC---hHHHHHHHHHHh
Q 006705 190 FESHIYVGSSLLDMYAKAGRIHEARGVFECLPER-DVVS--C--TAIISGYA---------QLGL---DEEAIELFRKLQ 252 (634)
Q Consensus 190 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-~~~~--~--~~li~~~~---------~~g~---~~~A~~~~~~m~ 252 (634)
+.+...+..++....+.|-...|.++..+-+.- +... | ...+.-.+ ...+ .+.|+.-++.+.
T Consensus 200 -P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~ 278 (822)
T PRK14574 200 -PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLL 278 (822)
T ss_pred -CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Confidence 667888888999999999999999988876531 1111 1 00011111 1122 345566666655
Q ss_pred hc-CCccChh-h----HHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC--
Q 006705 253 VE-GMISNYV-T----YASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER-- 324 (634)
Q Consensus 253 ~~-g~~p~~~-t----~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-- 324 (634)
.. +-.|... - ..-.+-++...++..++.+.++.+...+.+.-..+--++.++|...+.+++|..+|..+...
T Consensus 279 ~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~ 358 (822)
T PRK14574 279 TRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDG 358 (822)
T ss_pred hhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccc
Confidence 42 2223322 2 22346678889999999999999999887666678899999999999999999999987532
Q ss_pred -------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC----------CCCCH--H-HHHHHHHHHhccCcHHHHHHH
Q 006705 325 -------TVISWNAMLVGYSKHGMGREVVELFNLMREENK----------VKPDS--V-TYLAVLSGCSHGGMEDRGLAV 384 (634)
Q Consensus 325 -------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g----------~~pd~--~-t~~~ll~a~~~~g~~~~a~~~ 384 (634)
+......|.-+|...+++++|..+++++.+... -.||. . .+..++..+...|++.+|++.
T Consensus 359 ~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~ 438 (822)
T PRK14574 359 KTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKK 438 (822)
T ss_pred cccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 233357789999999999999999999987411 01332 2 334456668899999999999
Q ss_pred HHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHhccCC
Q 006705 385 FHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPT-AAILGSLLGACRVHYNVDIGEFVGQRLMEIEP 462 (634)
Q Consensus 385 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 462 (634)
++.+... -+-|......+.+.+...|.+.+|++.++.. ...|+ ..+......+....+++++|+.+.+.+.+..|
T Consensus 439 le~l~~~---aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 439 LEDLSST---APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HHHHHHh---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCC
Confidence 9999863 3558999999999999999999999999876 33454 45566777888889999999999999999999
Q ss_pred CCCc
Q 006705 463 ENAG 466 (634)
Q Consensus 463 ~~~~ 466 (634)
+++.
T Consensus 516 e~~~ 519 (822)
T PRK14574 516 EDIP 519 (822)
T ss_pred Cchh
Confidence 9864
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.4e-13 Score=141.94 Aligned_cols=412 Identities=11% Similarity=0.070 Sum_probs=249.1
Q ss_pred hHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCCCC------cchHHHHHHHHHhCCChhHHHHHHH
Q 006705 75 RGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN------VVSWTAMISAYSQKAHSFEALNLFI 148 (634)
Q Consensus 75 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~ 148 (634)
..|.+++....... ..++.+.+.|.+.|.-.|++..++.+...+...+ ..+|--+.++|-..|++++|...|.
T Consensus 253 ~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~ 331 (1018)
T KOG2002|consen 253 KKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYM 331 (1018)
T ss_pred HHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 34444444443332 3345555555555555555555555555443311 1234445555555566666665555
Q ss_pred HHHHCCCCCChh--hHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC----CHHHHHHHHccCCC
Q 006705 149 RMLRSDTEPNEF--TFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG----RIHEARGVFECLPE 222 (634)
Q Consensus 149 ~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g----~~~~A~~~~~~m~~ 222 (634)
+-... .||.+ .+..+...+...|+++.+...|+.+.+.. +.+..+.-.|...|+..+ ..+.|..+..+...
T Consensus 332 ~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~ 408 (1018)
T KOG2002|consen 332 ESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE 408 (1018)
T ss_pred HHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh
Confidence 54432 23322 23334445555555555555555555542 333444444444444442 22333333332222
Q ss_pred -----------------------------------------CChhhHHHHHHHHHhcCChHHHHHHHHHHhhc---CCcc
Q 006705 223 -----------------------------------------RDVVSCTAIISGYAQLGLDEEAIELFRKLQVE---GMIS 258 (634)
Q Consensus 223 -----------------------------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p 258 (634)
.-+...|.+...+...|++++|...|...... -..+
T Consensus 409 ~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~ 488 (1018)
T KOG2002|consen 409 QTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANK 488 (1018)
T ss_pred cccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCc
Confidence 23344555566666677777777777666543 1233
Q ss_pred Chh------hHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhH
Q 006705 259 NYV------TYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS---ERTVISW 329 (634)
Q Consensus 259 ~~~------t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~ 329 (634)
|.. +--.+....-..++.+.|.+.|..+++.. |.-+..|--|..+.-..+...+|...+.... ..|+..|
T Consensus 489 de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~ar 567 (1018)
T KOG2002|consen 489 DEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNAR 567 (1018)
T ss_pred cccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHH
Confidence 331 11123333345566777777777776653 2222222222222222345667777777665 3466777
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------------cCcHHHHHHHHHHhhhccCCccC
Q 006705 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH------------GGMEDRGLAVFHEIVDCKDGFEP 397 (634)
Q Consensus 330 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~------------~g~~~~a~~~~~~~~~~~~~~~p 397 (634)
+-+...+.....+..|.+-|....+.....+|..+..+|.+.|.. .+..++|+++|..+.+. -+.
T Consensus 568 sl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~---dpk 644 (1018)
T KOG2002|consen 568 SLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN---DPK 644 (1018)
T ss_pred HHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc---Ccc
Confidence 777778888888888888777766653344677777777665432 24567899999998864 355
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccC-C-CCCchHHHHHH
Q 006705 398 EIEHYGCVVDMLGRAGRVGEALEFIKNMP--FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIE-P-ENAGNYVILSN 473 (634)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~ 473 (634)
|...-|-+.-.++..|++.+|..+|.+.. ...+..+|-.+...|...|++..|.++++..++.. + +++.....|+.
T Consensus 645 N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lar 724 (1018)
T KOG2002|consen 645 NMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLAR 724 (1018)
T ss_pred hhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 78888889999999999999999999872 12345689999999999999999999999887643 2 35677889999
Q ss_pred HHhhcCCcHHHHHHHHHHhhC
Q 006705 474 LYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 474 ~~~~~g~~~~A~~~~~~m~~~ 494 (634)
++.+.|.+.+|.+........
T Consensus 725 a~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 725 AWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHhhhHHHHHHHHHHHHHh
Confidence 999999999999998887654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-12 Score=135.35 Aligned_cols=426 Identities=10% Similarity=0.063 Sum_probs=296.1
Q ss_pred HhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHH---HcC---CChHHHHHHHhhcC---CCCcchHHHHHHHHHhCC
Q 006705 68 CVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY---NKC---ECLSDARKMFDEMR---ERNVVSWTAMISAYSQKA 138 (634)
Q Consensus 68 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y---~~~---g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 138 (634)
+.+.++.+.|+..|....+.+ | ...++++..+ ... ..+..+..++...- ..|++..|.|.+-|.-.|
T Consensus 209 f~kl~~~~~a~~a~~ralqLd--p--~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~ 284 (1018)
T KOG2002|consen 209 FWKLGMSEKALLAFERALQLD--P--TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKK 284 (1018)
T ss_pred HHhccchhhHHHHHHHHHhcC--h--hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcc
Confidence 346667777777777776653 2 2222222211 111 23344444444332 257888888999999999
Q ss_pred ChhHHHHHHHHHHHCCCC--CChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 006705 139 HSFEALNLFIRMLRSDTE--PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216 (634)
Q Consensus 139 ~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 216 (634)
+++.++.+...+...... .-...|-.+.+++-..|++++|...|-+..+..-..-+..+-.|..+|.+.|+++.+...
T Consensus 285 dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~ 364 (1018)
T KOG2002|consen 285 DYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFC 364 (1018)
T ss_pred cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHH
Confidence 999999998888764311 123457788889999999999999998877654222234455688999999999999999
Q ss_pred HccCCC--C-ChhhHHHHHHHHHhcC----ChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHH----
Q 006705 217 FECLPE--R-DVVSCTAIISGYAQLG----LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSH---- 285 (634)
Q Consensus 217 ~~~m~~--~-~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~---- 285 (634)
|+.+.. | +..+...+...|+..+ ..+.|..++.+....- +.|...|..+-..+-... ...+...+..
T Consensus 365 fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~ 442 (1018)
T KOG2002|consen 365 FEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTD-PWASLDAYGNALDI 442 (1018)
T ss_pred HHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHH
Confidence 998754 3 4456666777777765 4566777776666543 445566666655554433 3333544443
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-------Ch------hhHHHHHHHHHhcCChHHHHHHHHHH
Q 006705 286 VLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER-------TV------ISWNAMLVGYSKHGMGREVVELFNLM 352 (634)
Q Consensus 286 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-------~~------~~~~~li~~~~~~g~~~~A~~~~~~m 352 (634)
+...+.++-+.+.|.+...+...|++..|...|+..... |. .+--.+...+-..++.+.|.+.|..+
T Consensus 443 L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~I 522 (1018)
T KOG2002|consen 443 LESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSI 522 (1018)
T ss_pred HHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 334565677889999999999999999999999876532 22 11222455666778999999999999
Q ss_pred HHcCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHH----hCCC
Q 006705 353 REENKVKPDSV-TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK----NMPF 427 (634)
Q Consensus 353 ~~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~ 427 (634)
.+. .|.-+ .|..++......+...+|...+..... ....++..++.+.+.+.+...+.-|.+-|. +...
T Consensus 523 lke---hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~---~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~ 596 (1018)
T KOG2002|consen 523 LKE---HPGYIDAYLRLGCMARDKNNLYEASLLLKDALN---IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTST 596 (1018)
T ss_pred HHH---CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh---cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhcc
Confidence 986 46653 455555344456788899999999886 446677788888889988888888877444 4444
Q ss_pred CCCHHHHHHHHHHHHhc------------CCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCC
Q 006705 428 EPTAAILGSLLGACRVH------------YNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495 (634)
Q Consensus 428 ~p~~~~~~~ll~~~~~~------------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 495 (634)
.+|..+.-+|.+.|... +..+.|.+.+.++++.+|.|..+-+-++-+++..|++.+|..||.+..+..
T Consensus 597 ~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~ 676 (1018)
T KOG2002|consen 597 KTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT 676 (1018)
T ss_pred CCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH
Confidence 57888887777765432 235678889999999999998888889999999999999999999998875
Q ss_pred CccCCceeEEEE
Q 006705 496 VTKDPGRSWIEL 507 (634)
Q Consensus 496 ~~~~~~~s~~~~ 507 (634)
..-. ..|+.+
T Consensus 677 ~~~~--dv~lNl 686 (1018)
T KOG2002|consen 677 SDFE--DVWLNL 686 (1018)
T ss_pred hhCC--ceeeeH
Confidence 5222 257643
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.3e-13 Score=130.18 Aligned_cols=411 Identities=12% Similarity=0.054 Sum_probs=286.6
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHH-HHHHHHHHcCCChHHHHHHHhhcCC--CC------cchHHHHHH
Q 006705 62 DTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLR-TRLIVFYNKCECLSDARKMFDEMRE--RN------VVSWTAMIS 132 (634)
Q Consensus 62 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A~~~~~~~~~--~~------~~~~~~li~ 132 (634)
..|.+.|.......+|+..++.+++....|+.-.. -.+-+.|.+...+.+|.+.+..... |+ +...|.+--
T Consensus 205 ~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigv 284 (840)
T KOG2003|consen 205 FNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGV 284 (840)
T ss_pred HHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCe
Confidence 33444555666678888889988887766665433 2345678888899999998765432 22 224555556
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCC------------CchHHHHHH
Q 006705 133 AYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE------------SHIYVGSSL 200 (634)
Q Consensus 133 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~------------~~~~~~~~l 200 (634)
.|.+.|++++|+.-|+...+. .||..+-..++-++...|+-+..++.|..++..-.. |+....|--
T Consensus 285 tfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ea 362 (840)
T KOG2003|consen 285 TFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEA 362 (840)
T ss_pred eEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHH
Confidence 788999999999999998874 688777666666777789999999999998864322 222222222
Q ss_pred HH-----HHHhcC--CHHHH----HHHHccCCCCChh---hHH------------------HHHHHHHhcCChHHHHHHH
Q 006705 201 LD-----MYAKAG--RIHEA----RGVFECLPERDVV---SCT------------------AIISGYAQLGLDEEAIELF 248 (634)
Q Consensus 201 i~-----~y~~~g--~~~~A----~~~~~~m~~~~~~---~~~------------------~li~~~~~~g~~~~A~~~~ 248 (634)
|. -.-+.+ +.+++ .++..-+..||-. -|. .-..-|.++|+++.|++++
T Consensus 363 i~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieil 442 (840)
T KOG2003|consen 363 IKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEIL 442 (840)
T ss_pred HhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHH
Confidence 21 111111 11111 1222222223211 111 0123478899999999998
Q ss_pred HHHhhcCCccChhhHHHH--HH---------------------------H-------HhcccchHHHHHHHHHHHHcCCC
Q 006705 249 RKLQVEGMISNYVTYASV--LT---------------------------A-------LSGLAALGHGKQVHSHVLRFEIP 292 (634)
Q Consensus 249 ~~m~~~g~~p~~~t~~~l--l~---------------------------~-------~~~~~~~~~a~~i~~~~~~~~~~ 292 (634)
+-+.+..-+.-...-+.+ +. + ....|++++|.+.+.+.+.....
T Consensus 443 kv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas 522 (840)
T KOG2003|consen 443 KVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS 522 (840)
T ss_pred HHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH
Confidence 877654322111111111 10 0 11347888888888888876544
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 006705 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMS---ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369 (634)
Q Consensus 293 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll 369 (634)
-....|| +.-.+-+.|++++|.+.|-++. ..++...-.+...|-...+..+|++++-+.... ++.|+..+.-|.
T Consensus 523 c~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl--ip~dp~ilskl~ 599 (840)
T KOG2003|consen 523 CTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL--IPNDPAILSKLA 599 (840)
T ss_pred HHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc--CCCCHHHHHHHH
Confidence 3344444 3334677899999999988765 356667777788888889999999998777654 666778888888
Q ss_pred HHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH-HHhcCCc
Q 006705 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTAAILGSLLGA-CRVHYNV 447 (634)
Q Consensus 370 ~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~-~~~~~~~ 447 (634)
..|-+.|+-.+|.+.+-.--+ -++.+.++..-|..-|....-+++|+..|++. -++|+..-|..++.. +++.|++
T Consensus 600 dlydqegdksqafq~~ydsyr---yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgny 676 (840)
T KOG2003|consen 600 DLYDQEGDKSQAFQCHYDSYR---YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNY 676 (840)
T ss_pred HHhhcccchhhhhhhhhhccc---ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccH
Confidence 999999999999887765543 56778899888999999999999999999987 568999999999855 5788999
Q ss_pred hHHHHHHHHHhccCCCCCchHHHHHHHHhhcCC
Q 006705 448 DIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480 (634)
Q Consensus 448 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 480 (634)
..|..+++...+..|.+......|+.++...|.
T Consensus 677 qka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 677 QKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 999999999999999999999999999988885
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.5e-11 Score=115.82 Aligned_cols=291 Identities=15% Similarity=0.172 Sum_probs=208.2
Q ss_pred hhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHH---HHcCCCh------------------------HH
Q 006705 59 EEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVF---YNKCECL------------------------SD 111 (634)
Q Consensus 59 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~---y~~~g~~------------------------~~ 111 (634)
.|=+.|++. ...|.++.+.-+++.|...|.+.+..+--.|... |-...-. +-
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 344555554 3567788888999999988877776665555432 2221111 11
Q ss_pred HHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCC
Q 006705 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE 191 (634)
Q Consensus 112 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 191 (634)
|. ++-+...++..+|..||.|+++--..+.|.+++++-.....+.+..+||.++.+-+- ..++.+..+|+...+.
T Consensus 196 Ad-L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 196 AD-LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMT 270 (625)
T ss_pred HH-HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcC
Confidence 22 333333456778999999999999999999999999988888999999999987543 3448899999999999
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHH----ccCC----CCChhhHHHHHHHHHhcCChHH-HHHHHHHHhhc----CCc-
Q 006705 192 SHIYVGSSLLDMYAKAGRIHEARGVF----ECLP----ERDVVSCTAIISGYAQLGLDEE-AIELFRKLQVE----GMI- 257 (634)
Q Consensus 192 ~~~~~~~~li~~y~~~g~~~~A~~~~----~~m~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~----g~~- 257 (634)
||..|+|+++.+.++.|+++.|++.+ .+|+ +|...+|.-+|..+.+-+++.+ |..++.+++.. ..+
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 99999999999999999988776654 3443 4788899999998888888755 44455554432 222
Q ss_pred --c-ChhhHHHHHHHHhcccchHHHHHHHHHHHHcC----CCCc---hhHHHHHHHHHHhcCCHHHHHHHHhhcCC----
Q 006705 258 --S-NYVTYASVLTALSGLAALGHGKQVHSHVLRFE----IPSY---VVLQNSLIDMYSKCGSLTYSRRVFDNMSE---- 323 (634)
Q Consensus 258 --p-~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~f~~m~~---- 323 (634)
| |..-|.+.+..|.+..+.+.|.+++..+.... ++++ ..-|..+....+....++.-...|+.|..
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 2 34557788888999999999999888665421 2232 23345566777777778888888888764
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006705 324 RTVISWNAMLVGYSKHGMGREVVELFNLMREE 355 (634)
Q Consensus 324 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 355 (634)
|+..+...++++..-.|+++-.-++|..|...
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ 462 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEY 462 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHh
Confidence 45666666777777777777777777777665
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.2e-11 Score=125.58 Aligned_cols=331 Identities=14% Similarity=0.134 Sum_probs=190.4
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 006705 138 AHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF 217 (634)
Q Consensus 138 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 217 (634)
|+.++|.+++.+..+.. +-+...|.++...+-..|+.+++...+-.+-... +.|...|-.+.+...+.|+++.|.-+|
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 55555555555555432 2234455555555555555555544443332222 334455555555555555555555555
Q ss_pred ccCCCCChhhHH---HHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCc
Q 006705 218 ECLPERDVVSCT---AIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY 294 (634)
Q Consensus 218 ~~m~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~ 294 (634)
.+..+.++.-|- --+..|-+.|+...|+.-|.++.....+.|..-+..+
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~---------------------------- 282 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDL---------------------------- 282 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHH----------------------------
Confidence 544432222121 2233455555555555555555543211111111111
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHc--------------
Q 006705 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSE-----RTVISWNAMLVGYSKHGMGREVVELFNLMREE-------------- 355 (634)
Q Consensus 295 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------------- 355 (634)
.-..+..|...++-+.|.+.++.... -+...++.++..|.+..+++.|......+...
T Consensus 283 ---i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~ 359 (895)
T KOG2076|consen 283 ---IRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDER 359 (895)
T ss_pred ---HHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhh
Confidence 11122333334444444444444332 12334555555555555566665555555441
Q ss_pred ------------CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCC--ccCChHHHHHHHHHHHHcCCHHHHHHH
Q 006705 356 ------------NKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG--FEPEIEHYGCVVDMLGRAGRVGEALEF 421 (634)
Q Consensus 356 ------------~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~ 421 (634)
.++.++... .-+.-+..+....+....+....... . ..-+...|.-+.++|...|++.+|+++
T Consensus 360 ~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~--n~~~~d~~dL~~d~a~al~~~~~~~~Al~~ 436 (895)
T KOG2076|consen 360 RREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVED--NVWVSDDVDLYLDLADALTNIGKYKEALRL 436 (895)
T ss_pred ccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHh--cCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 012222222 12222344455555555555555554 4 344678899999999999999999999
Q ss_pred HHhCC---CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCCCcc
Q 006705 422 IKNMP---FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTK 498 (634)
Q Consensus 422 ~~~m~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 498 (634)
|..+. .-.+...|--+..++...|.+++|.+.+++++.+.|++..+-..|..+|.+.|+.++|.+++..|...+-..
T Consensus 437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~ 516 (895)
T KOG2076|consen 437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRN 516 (895)
T ss_pred HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccc
Confidence 99882 223577999999999999999999999999999999999999999999999999999999999987433223
Q ss_pred CCceeE
Q 006705 499 DPGRSW 504 (634)
Q Consensus 499 ~~~~s~ 504 (634)
.+++.|
T Consensus 517 ~e~~a~ 522 (895)
T KOG2076|consen 517 AEACAW 522 (895)
T ss_pred hhhccc
Confidence 345555
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-14 Score=140.87 Aligned_cols=255 Identities=16% Similarity=0.134 Sum_probs=109.7
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHH-HHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 006705 232 ISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVL-TALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS 310 (634)
Q Consensus 232 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~ 310 (634)
...+.+.|++++|++++++-.....+|+...|-.++ ..+...++.+.|.+.++.+...+. .++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccccc
Confidence 344455556666666554433322233333333322 233345556666666666655542 245556666666 57788
Q ss_pred HHHHHHHHhhcC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 006705 311 LTYSRRVFDNMS--ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388 (634)
Q Consensus 311 ~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~ 388 (634)
+++|.+++...- .++...+..++..+.+.++++++.+++++.......+++...|..+...+.+.|+.++|...++..
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888777654 346677778888888999999999999987765234556677888888889999999999999999
Q ss_pred hhccCCccC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCC
Q 006705 389 VDCKDGFEP-EIEHYGCVVDMLGRAGRVGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENA 465 (634)
Q Consensus 389 ~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 465 (634)
.+. .| +....+.++..+...|+.+++.++++.. ..+.|...|..+..++...|+.+.|...++++.+..|+|+
T Consensus 173 l~~----~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 173 LEL----DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHH-----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHc----CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 864 45 5778888999999999999877777665 1134556788999999999999999999999999999999
Q ss_pred chHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 466 GNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 466 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
.....+++++...|+.++|.+++++..
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999988764
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.1e-11 Score=112.76 Aligned_cols=247 Identities=12% Similarity=0.066 Sum_probs=181.5
Q ss_pred CCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC----CCcchHHHHH
Q 006705 56 MRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE----RNVVSWTAMI 131 (634)
Q Consensus 56 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li 131 (634)
-+..||.++|...++-...+.|++++.+........+..++|.+|.+-+-..+ .+++.+|.. ||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHH
Confidence 36678899999988888889999998888777667888888988865443222 566666653 8999999999
Q ss_pred HHHHhCCChhH----HHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHH-HHHHHHHHHHh--C--C----CCchHHHH
Q 006705 132 SAYSQKAHSFE----ALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFEL-GKQIHSLIIKS--N--F----ESHIYVGS 198 (634)
Q Consensus 132 ~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~~--g--~----~~~~~~~~ 198 (634)
+..++.|+++. |++++.+|++-|+.|...+|..+|....+.++..+ +..+...+... | + +.|...+.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 99999997764 56778888889999999999999888888777644 33333333321 1 2 23455667
Q ss_pred HHHHHHHhcCCHHHHHHHHccCCC--------C---ChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHH
Q 006705 199 SLLDMYAKAGRIHEARGVFECLPE--------R---DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVL 267 (634)
Q Consensus 199 ~li~~y~~~g~~~~A~~~~~~m~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 267 (634)
.-++.|.+..+.+-|.++-.-... + ...-|..+....++....+.-+.+|..|.-.-.-|+..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 777888888888888777543332 1 12345567777888888899999999998887889999999999
Q ss_pred HHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 006705 268 TALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYS 306 (634)
Q Consensus 268 ~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~ 306 (634)
+|....+.++-..+++..++..|.........-++..++
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~ 479 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLA 479 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 999999999999999998888875544444333333333
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4e-11 Score=124.19 Aligned_cols=427 Identities=11% Similarity=0.069 Sum_probs=236.5
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCCCC
Q 006705 44 KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123 (634)
Q Consensus 44 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 123 (634)
+++..|...|+.||.+||.+++..|+..|+.+.|- +|..|.-..++.+..+++.++.+....++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 67888999999999999999999999999999999 9999998888889999999999999999988776 788
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHH-HHH-------CCCCCChhhHHHHHHHH--------------hccCCcHHHHHH
Q 006705 124 VVSWTAMISAYSQKAHSFEALNLFIR-MLR-------SDTEPNEFTFATVLTSC--------------AGAFGFELGKQI 181 (634)
Q Consensus 124 ~~~~~~li~~~~~~g~~~~A~~~~~~-m~~-------~g~~p~~~t~~~ll~~~--------------~~~~~~~~a~~~ 181 (634)
..+|+.|..+|.++|+... ++.-++ |.. .|+..-..-|-..+.+| ...|-++.+.++
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999765 222222 221 22221111121111221 112233333333
Q ss_pred HHHHHHhCCCCchHHHHHH--HHHHHh-cCCHHHHHHHHccCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCc
Q 006705 182 HSLIIKSNFESHIYVGSSL--LDMYAK-AGRIHEARGVFECLP-ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257 (634)
Q Consensus 182 ~~~~~~~g~~~~~~~~~~l--i~~y~~-~g~~~~A~~~~~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 257 (634)
+..+ +......... ++-... ...+++-........ .++..++.+++..-..+|+.+.|..++.+|++.|++
T Consensus 162 l~~~-----Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 162 LAKV-----PVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred HhhC-----CcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 3211 1000000000 110000 011222222222222 245555666666555666666666666666666655
Q ss_pred cChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC----------------------------
Q 006705 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG---------------------------- 309 (634)
Q Consensus 258 p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g---------------------------- 309 (634)
.+..-|-.++-+ .++......+..-|...|+.|+..|+.-.+-...+.|
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~ 313 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLL 313 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccH
Confidence 555555555433 4555555555555555555555555544333333322
Q ss_pred ------------------------------------------CHHHHHHHHhhcCCC-------ChhhHHHHHHHHHhcC
Q 006705 310 ------------------------------------------SLTYSRRVFDNMSER-------TVISWNAMLVGYSKHG 340 (634)
Q Consensus 310 ------------------------------------------~~~~A~~~f~~m~~~-------~~~~~~~li~~~~~~g 340 (634)
.-+..+++-..+..| ++..|..++.
T Consensus 314 a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lr------ 387 (1088)
T KOG4318|consen 314 ANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLR------ 387 (1088)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHH------
Confidence 222222222222111 2222222222
Q ss_pred ChHHHHHHHHHHHHcC----------------------------CCCCCHH----------------------------H
Q 006705 341 MGREVVELFNLMREEN----------------------------KVKPDSV----------------------------T 364 (634)
Q Consensus 341 ~~~~A~~~~~~m~~~~----------------------------g~~pd~~----------------------------t 364 (634)
+.|.+..... ...||.. .
T Consensus 388 ------qyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi 461 (1088)
T KOG4318|consen 388 ------QYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDI 461 (1088)
T ss_pred ------HHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHH
Confidence 2222222110 0112211 0
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCC-----CCCCHHHHHHHHH
Q 006705 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP-----FEPTAAILGSLLG 439 (634)
Q Consensus 365 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~~~~~~~ll~ 439 (634)
-+.++-.|...-+..+++..-+..... - -...|..||+.+....+.++|..+.++.. +.-|..-+..+..
T Consensus 462 ~~ql~l~l~se~n~lK~l~~~ekye~~--l---f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~d 536 (1088)
T KOG4318|consen 462 ANQLHLTLNSEYNKLKILCDEEKYEDL--L---FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQD 536 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--H---hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHH
Confidence 111222222222222332222111110 1 12468889999999999999999998873 2234445667777
Q ss_pred HHHhcCCchHHHHHHHHHhc---cCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCCCccCCceeEE
Q 006705 440 ACRVHYNVDIGEFVGQRLME---IEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWI 505 (634)
Q Consensus 440 ~~~~~~~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~ 505 (634)
...+++....+..+.+...+ ..|........+.+..+..|..+...++++-+...|+.. .+.-|.
T Consensus 537 LL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~~ 604 (1088)
T KOG4318|consen 537 LLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLWM 604 (1088)
T ss_pred HHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccceE
Confidence 77888877777777666554 223223445567777788899999999999998888765 444553
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-09 Score=108.46 Aligned_cols=414 Identities=11% Similarity=0.084 Sum_probs=199.7
Q ss_pred HHHHcCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCC--ChhHHHHHHHHHHcCCChHHHHHHHhhcCC---C
Q 006705 48 EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRP--PVYLRTRLIVFYNKCECLSDARKMFDEMRE---R 122 (634)
Q Consensus 48 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~ 122 (634)
.+...|+..|...|..=..+|-..|.+-.+..+....+..|+.. ...+|+.-.+.+.+.+.++-|+.+|....+ .
T Consensus 469 ~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~ 548 (913)
T KOG0495|consen 469 ELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPC 548 (913)
T ss_pred HHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccc
Confidence 34445555555555555555555555555555555555554322 123444445555555555555555544433 2
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 006705 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLD 202 (634)
Q Consensus 123 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 202 (634)
+...|......=-..|..++-..+|++....- +-....|....+..-..||+..|+.++.++.+.. +.+..+|-+-+.
T Consensus 549 k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavK 626 (913)
T KOG0495|consen 549 KKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVK 626 (913)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 33344444444444455555555555554431 1122222222333334455555555555554443 224444444455
Q ss_pred HHHhcCCHHHHHHHHccCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHH
Q 006705 203 MYAKAGRIHEARGVFECLPE--RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGK 280 (634)
Q Consensus 203 ~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 280 (634)
.-....+++.|+.+|.+... ++...|.--+..---.++.++|++++++..+. -|+
T Consensus 627 le~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~--------------------- 683 (913)
T KOG0495|consen 627 LEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPD--------------------- 683 (913)
T ss_pred HhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCc---------------------
Confidence 55555555555555544322 23333433333333344445555555444432 233
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 006705 281 QVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE--R-TVISWNAMLVGYSKHGMGREVVELFNLMREENK 357 (634)
Q Consensus 281 ~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g 357 (634)
-...|-.+...+-+.++++.|++.|..-.+ | .+..|-.+...--+.|+..+|..+|++.+..
T Consensus 684 -------------f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk-- 748 (913)
T KOG0495|consen 684 -------------FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK-- 748 (913)
T ss_pred -------------hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--
Confidence 333444444445555555555554443332 2 2334444444444444555555555554443
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 006705 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSL 437 (634)
Q Consensus 358 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 437 (634)
-+-|...|...+..-.+.|+.+.|..+.....+ ..+.+...|..-|-+..+.++-..+.+-+++.. .|..+.-++
T Consensus 749 NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ---ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllai 823 (913)
T KOG0495|consen 749 NPKNALLWLESIRMELRAGNKEQAELLMAKALQ---ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAI 823 (913)
T ss_pred CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHH
Confidence 223344455555555555555555555544443 233344455555555555555444444444443 233344444
Q ss_pred HHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCCCccCCceeEEEEC
Q 006705 438 LGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELD 508 (634)
Q Consensus 438 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~ 508 (634)
...+.....++.|..-|.++.+.+|++..+|.-+-..+.+.|.-++-.++++..... .|..|..|..+.
T Consensus 824 a~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avS 892 (913)
T KOG0495|consen 824 AKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHh
Confidence 445555556666666666666666666666666666666666666666666655443 344455665444
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.6e-09 Score=107.48 Aligned_cols=419 Identities=12% Similarity=0.045 Sum_probs=319.4
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC--
Q 006705 44 KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE-- 121 (634)
Q Consensus 44 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-- 121 (634)
++++.-.+. -|+++. |=++.....+.+.|+-++...++.- +.+...| -+|++..-++.|.+++++..+
T Consensus 367 RVlRKALe~--iP~sv~---LWKaAVelE~~~darilL~rAvecc-p~s~dLw----lAlarLetYenAkkvLNkaRe~i 436 (913)
T KOG0495|consen 367 RVLRKALEH--IPRSVR---LWKAAVELEEPEDARILLERAVECC-PQSMDLW----LALARLETYENAKKVLNKAREII 436 (913)
T ss_pred HHHHHHHHh--CCchHH---HHHHHHhccChHHHHHHHHHHHHhc-cchHHHH----HHHHHHHHHHHHHHHHHHHHhhC
Confidence 455555443 355443 2334445566777888888888763 3444444 445566678899999988765
Q ss_pred -CCcchHHHHHHHHHhCCChhHHHHHHHH----HHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCc--h
Q 006705 122 -RNVVSWTAMISAYSQKAHSFEALNLFIR----MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH--I 194 (634)
Q Consensus 122 -~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~ 194 (634)
.+...|-+-...=-.+|+.+....++.+ +...|+..+...|..=..+|-..|..-.+..+...++..|++.. -
T Consensus 437 ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~ 516 (913)
T KOG0495|consen 437 PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRK 516 (913)
T ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhH
Confidence 4777888777777788998888887765 45568888999998888889999999999999999988887653 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHh
Q 006705 195 YVGSSLLDMYAKAGRIHEARGVFECLPE---RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271 (634)
Q Consensus 195 ~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 271 (634)
.+|+.-...|.+.+.++-|+.+|....+ .+...|...+..--..|..++-..+|++.... ++-....|.......-
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKW 595 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHH
Confidence 6788888899999999999999876654 46678888777777788889999999999876 3334445555556666
Q ss_pred cccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhhHHHHHHHHHhcCChHHHHHHH
Q 006705 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE--RTVISWNAMLVGYSKHGMGREVVELF 349 (634)
Q Consensus 272 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~ 349 (634)
..|+...|+.++..+.+.. +.+..+|-+-+..-.....++.|+.+|.+... +....|.--+...--.+..++|++++
T Consensus 596 ~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rll 674 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLL 674 (913)
T ss_pred hcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHH
Confidence 7799999999999998876 44778888888889999999999999998764 56777877777777788899999999
Q ss_pred HHHHHcCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC--C
Q 006705 350 NLMREENKVKPDS-VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM--P 426 (634)
Q Consensus 350 ~~m~~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~ 426 (634)
++..+. -|+- ..|..+.+.+-+.++++.|...|..-.+ ..+..+..|-.|...=-+.|.+-.|..++++. .
T Consensus 675 Ee~lk~---fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k---~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 675 EEALKS---FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK---KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHh---CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc---cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 888875 3554 6677777888888999999888877664 34456678888888888999999999999886 4
Q ss_pred CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCC
Q 006705 427 FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480 (634)
Q Consensus 427 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 480 (634)
.+.+...|-..|..-.+.|+.++|+.++.++++--|++...|..-|.+..+.++
T Consensus 749 NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 749 NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc
Confidence 456788899999999999999999998888887777665555444444444443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.3e-11 Score=124.86 Aligned_cols=284 Identities=11% Similarity=-0.013 Sum_probs=139.0
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHH--HHHHHHHHHhcCCHHHHH
Q 006705 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV--GSSLLDMYAKAGRIHEAR 214 (634)
Q Consensus 137 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~ 214 (634)
.|+++.|.+.+.......-.| ...|.....+....|+++.+.+.+..+.+. .|+... .......+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 577777776666544431111 122333334446677777777777777654 333322 223356777777777777
Q ss_pred HHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCC
Q 006705 215 GVFECLPE---RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI 291 (634)
Q Consensus 215 ~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~ 291 (634)
..++++.+ .+......+...|.+.|++++|.+++..+.+.+..++. .+..+-.
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~~----------------------- 229 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLEQ----------------------- 229 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHHH-----------------------
Confidence 77776654 24556677777777788888888888887776543222 1110000
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 006705 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAV 368 (634)
Q Consensus 292 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~l 368 (634)
..+..++....+..+.+...++++.++. .++.....+..++...|+.++|.+.+++..+. .||... .+
T Consensus 230 ----~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l--~~ 300 (398)
T PRK10747 230 ----QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERL--VL 300 (398)
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHH--HH
Confidence 0011111111122223333333333331 23444444455555555555555555444432 222211 11
Q ss_pred HHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCc
Q 006705 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTAAILGSLLGACRVHYNV 447 (634)
Q Consensus 369 l~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~ 447 (634)
+.+....++.+++.+..+...+. .+-|...+.++..++.+.|++++|.+.|++. ...|+...+..+...+...|+.
T Consensus 301 l~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~ 377 (398)
T PRK10747 301 LIPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKP 377 (398)
T ss_pred HHhhccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH
Confidence 22222334555555555554432 1223444445555555555555555555544 3345555545555555555555
Q ss_pred hHHHHHHHHHhc
Q 006705 448 DIGEFVGQRLME 459 (634)
Q Consensus 448 ~~a~~~~~~~~~ 459 (634)
++|..++++.+.
T Consensus 378 ~~A~~~~~~~l~ 389 (398)
T PRK10747 378 EEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHh
Confidence 555555555443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.7e-09 Score=109.85 Aligned_cols=354 Identities=12% Similarity=0.126 Sum_probs=266.7
Q ss_pred HHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhc---CCCCcchHHHHHHHHHhCCChhH
Q 006705 66 NACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM---RERNVVSWTAMISAYSQKAHSFE 142 (634)
Q Consensus 66 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~ 142 (634)
+.....|+++.|..++.++++.. +.....|-.|...|-..|+.+++...+--. ...|..-|-.+-.-..+.|++++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHH
Confidence 33344599999999999999986 556778999999999999999998876443 34577889999999999999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHH----HHHHHHHhcCCHHHHHHHHc
Q 006705 143 ALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGS----SLLDMYAKAGRIHEARGVFE 218 (634)
Q Consensus 143 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~li~~y~~~g~~~~A~~~~~ 218 (634)
|.-.|.+..+.. +++...+---...|-+.|+...|..-+.++.....+.|..-.- ..+..|...++-+.|.+.++
T Consensus 226 A~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 226 ARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999998863 3344444455667889999999999999998875333332222 24556677788888988888
Q ss_pred cCCC--C---ChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCcc----------------------ChhhHH----HHH
Q 006705 219 CLPE--R---DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS----------------------NYVTYA----SVL 267 (634)
Q Consensus 219 ~m~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----------------------~~~t~~----~ll 267 (634)
.... . +...+|.++..|.+...++.|......+......+ +...|. -+.
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ 384 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLM 384 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHh
Confidence 7654 2 34568899999999999999999988887621111 111111 223
Q ss_pred HHHhcccchHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhhHHHHHHHHHhcCC
Q 006705 268 TALSGLAALGHGKQVHSHVLRFE--IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE----RTVISWNAMLVGYSKHGM 341 (634)
Q Consensus 268 ~~~~~~~~~~~a~~i~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~ 341 (634)
-++.+....+....+.....+.. ...++..+.-+.++|...|++.+|..+|..+.. .+...|--+..+|...|.
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 34456666666777777777776 445677889999999999999999999999874 367799999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhhhc------cCCccCChHHHHHHHHHHHHcCC
Q 006705 342 GREVVELFNLMREENKVKPDS-VTYLAVLSGCSHGGMEDRGLAVFHEIVDC------KDGFEPEIEHYGCVVDMLGRAGR 414 (634)
Q Consensus 342 ~~~A~~~~~~m~~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~------~~~~~p~~~~~~~li~~~~~~g~ 414 (634)
+++|++.|+..... .|+. ..-.+|-+.+.+.|+.++|.+.+..+..- ..+..|+........+.|...|+
T Consensus 465 ~e~A~e~y~kvl~~---~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 465 YEEAIEFYEKVLIL---APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred HHHHHHHHHHHHhc---CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 99999999999875 4544 45556666788999999999999885421 00345666667777888999999
Q ss_pred HHHHHHHHHh
Q 006705 415 VGEALEFIKN 424 (634)
Q Consensus 415 ~~~A~~~~~~ 424 (634)
.++=.+.-..
T Consensus 542 ~E~fi~t~~~ 551 (895)
T KOG2076|consen 542 REEFINTAST 551 (895)
T ss_pred HHHHHHHHHH
Confidence 8875544433
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-10 Score=119.68 Aligned_cols=288 Identities=11% Similarity=-0.018 Sum_probs=159.4
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChh-hHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHH
Q 006705 136 QKAHSFEALNLFIRMLRSDTEPNEF-TFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214 (634)
Q Consensus 136 ~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 214 (634)
..|+++.|.+.+.+..+. .|+.. .+.....+....|+.+.+.+.+..+.+..-.+...+.-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 467788888877766553 34322 233344556667788888888777765432222234444566777777888777
Q ss_pred HHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCC
Q 006705 215 GVFECLPE---RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI 291 (634)
Q Consensus 215 ~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~ 291 (634)
..++.+.+ .+...+..+...|.+.|++++|.+++..+.+.++.++......-..+.
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~--------------------- 232 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAE--------------------- 232 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH---------------------
Confidence 77777654 255566677777777888888888877777765332221111111111
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHH---
Q 006705 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTY--- 365 (634)
Q Consensus 292 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~--- 365 (634)
..+++.-......+...+.++..+. .+...+..+...+...|+.++|.+.+++..+. .||....
T Consensus 233 -------~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~ 302 (409)
T TIGR00540 233 -------IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLP 302 (409)
T ss_pred -------HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhH
Confidence 0011111111122333334444432 25556666666666666666666666666654 2333210
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhhccCCccCCh--HHHHHHHHHHHHcCCHHHHHHHHHh---CCCCCCHHHHHHHHHH
Q 006705 366 LAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEI--EHYGCVVDMLGRAGRVGEALEFIKN---MPFEPTAAILGSLLGA 440 (634)
Q Consensus 366 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~---m~~~p~~~~~~~ll~~ 440 (634)
..........++.+.+.+.++...+.. +-|+ ....++...+.+.|++++|.+.|+. ....|+...+..+...
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~~lk~~---p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~l 379 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEKQAKNV---DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADA 379 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHHHHHhC---CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHH
Confidence 111111233455666666666665432 2222 4455666666677777777777762 2445666666666666
Q ss_pred HHhcCCchHHHHHHHHHhc
Q 006705 441 CRVHYNVDIGEFVGQRLME 459 (634)
Q Consensus 441 ~~~~~~~~~a~~~~~~~~~ 459 (634)
+.+.|+.++|..++++.+.
T Consensus 380 l~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 380 FDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777666666543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-10 Score=119.06 Aligned_cols=275 Identities=8% Similarity=0.034 Sum_probs=201.0
Q ss_pred cCCHHHHHHHHccCCCC--Ch-hhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHH--HHHHHHhcccchHHHHH
Q 006705 207 AGRIHEARGVFECLPER--DV-VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYA--SVLTALSGLAALGHGKQ 281 (634)
Q Consensus 207 ~g~~~~A~~~~~~m~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~ 281 (634)
.|+++.|++.+...++. ++ ..|-.......+.|+++.|...|.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 58888888777765542 22 23322333446788888888888888763 45544333 22456677888888888
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh-----------hhHHHHHHHHHhcCChHHHHHHHH
Q 006705 282 VHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTV-----------ISWNAMLVGYSKHGMGREVVELFN 350 (634)
Q Consensus 282 i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~ 350 (634)
.++.+.+.. |.++.+...+...|.+.|++++|.+++..+.+... .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888887776 56677888888888888888888888888774321 133444444445555667777777
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC
Q 006705 351 LMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEP 429 (634)
Q Consensus 351 ~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 429 (634)
...+. .+.+......+..++...|+.++|..+++...+. +|+.... ++.+....++.+++.+..++. ...|
T Consensus 254 ~lp~~--~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~----~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 254 NQSRK--TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR----QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred hCCHH--HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC
Confidence 77654 4557788888999999999999999999998853 4555322 222333559999999999886 3344
Q ss_pred C-HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 430 T-AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 430 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
+ .....++...|...++++.|...++++.+..|++ ..|..|..++.+.|+.++|.+.+++-..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4 5567788899999999999999999999999984 6788999999999999999999987643
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.43 E-value=1e-12 Score=128.82 Aligned_cols=254 Identities=16% Similarity=0.152 Sum_probs=81.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHH-HHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 006705 131 ISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFAT-VLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209 (634)
Q Consensus 131 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 209 (634)
...+.+.|++++|+++++.......+|+...|-. +...+-..++.+.|.+.++.+.+.+ +.+...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 4455566666666666644433321333333333 3333445566666666666666554 2244455555555 56667
Q ss_pred HHHHHHHHccCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcC-CccChhhHHHHHHHHhcccchHHHHHHHHHH
Q 006705 210 IHEARGVFECLPE--RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG-MISNYVTYASVLTALSGLAALGHGKQVHSHV 286 (634)
Q Consensus 210 ~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~ 286 (634)
+++|.+++...-+ ++...+..++..+.+.++++++.++++...... .+++...|......+.+.|+.++|...++.+
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777666655422 345556666666777777777777777665432 2334445555556666666777777777666
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHH
Q 006705 287 LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS---ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363 (634)
Q Consensus 287 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~ 363 (634)
++.. |.|..+.+.++..+...|+.+++.++++... ..|...|..+..+|...|++++|+..|++..+. .+.|..
T Consensus 173 l~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~ 249 (280)
T PF13429_consen 173 LELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPL 249 (280)
T ss_dssp HHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HH
T ss_pred HHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc--cccccc
Confidence 6654 3355666666666666676666555554443 245566666777777777777777777776664 234556
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhh
Q 006705 364 TYLAVLSGCSHGGMEDRGLAVFHEIV 389 (634)
Q Consensus 364 t~~~ll~a~~~~g~~~~a~~~~~~~~ 389 (634)
+...+..++...|+.++|.++...+.
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 66666677777777777776666554
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.9e-10 Score=114.21 Aligned_cols=217 Identities=10% Similarity=0.033 Sum_probs=133.4
Q ss_pred HhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHH----HHHHHHHhcCCh
Q 006705 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER---TVISWN----AMLVGYSKHGMG 342 (634)
Q Consensus 270 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~----~li~~~~~~g~~ 342 (634)
+...|+++.|...++.+.+.. |.+..+...+...|.+.|++++|.+.+..+.+. +...+. ....++...+..
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~ 241 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMA 241 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433 233344444444455555555555444444421 111111 111112223333
Q ss_pred HHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHH-HHHHHHHH--HHcCCHHH
Q 006705 343 REVVELFNLMREEN--KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEH-YGCVVDML--GRAGRVGE 417 (634)
Q Consensus 343 ~~A~~~~~~m~~~~--g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~-~~~li~~~--~~~g~~~~ 417 (634)
+++.+.+..+.+.. ..+.+...+..+...+...|+.++|..+++...+. .|+... ...++..+ ...++.+.
T Consensus 242 ~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~----~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 242 DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK----LGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh----CCCcccchhHHHHHhhhcCCCChHH
Confidence 33444555555430 01237788888889999999999999999999975 343331 11133333 33578888
Q ss_pred HHHHHHhC-CCCCCH---HHHHHHHHHHHhcCCchHHHHHHH--HHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHH
Q 006705 418 ALEFIKNM-PFEPTA---AILGSLLGACRVHYNVDIGEFVGQ--RLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELM 491 (634)
Q Consensus 418 A~~~~~~m-~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 491 (634)
+.+.+++. ...|+. ....++...|.+.|++++|...++ ...+..|++ ..+..++.++.+.|+.++|.+++++-
T Consensus 318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888775 333443 556788899999999999999999 577788874 56779999999999999999999986
Q ss_pred h
Q 006705 492 K 492 (634)
Q Consensus 492 ~ 492 (634)
.
T Consensus 397 l 397 (409)
T TIGR00540 397 L 397 (409)
T ss_pred H
Confidence 4
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-08 Score=99.34 Aligned_cols=390 Identities=14% Similarity=0.127 Sum_probs=261.5
Q ss_pred HcCCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHH
Q 006705 104 NKCECLSDARKMFDEMRE---RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180 (634)
Q Consensus 104 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 180 (634)
-..+++..|+.+|+.... ++...|--.+..=.++.+...|..++++....=...|.. |.--+..--..|++..|++
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHHHHH
Confidence 345667777777776654 566667777777777777777888877776532222222 2222333345678888888
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCcc
Q 006705 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECL--PERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS 258 (634)
Q Consensus 181 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 258 (634)
+|+.-.+ ..|+...|++.|+.=.+...++.|+.++++. ..|++.+|--...-=-++|+..-|..+|....+. -.
T Consensus 163 iferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~ 238 (677)
T KOG1915|consen 163 IFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LG 238 (677)
T ss_pred HHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hh
Confidence 8887765 4788888888888888888888888888764 3578888877777777788888888888776653 12
Q ss_pred ChhhHHHHHHHH----hcccchHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhcCCHHHHHHH--------HhhcCCC
Q 006705 259 NYVTYASVLTAL----SGLAALGHGKQVHSHVLRFEIPSY--VVLQNSLIDMYSKCGSLTYSRRV--------FDNMSER 324 (634)
Q Consensus 259 ~~~t~~~ll~~~----~~~~~~~~a~~i~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~--------f~~m~~~ 324 (634)
|...-..+..++ .....++.|.-++...++.= +.+ ...|..+...--+-|+......+ ++.+...
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 233223333333 34566777888888777652 333 44555555555556664433332 2222222
Q ss_pred ---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHH-------HHHHHHHHH---hccCcHHHHHHHHHHhhhc
Q 006705 325 ---TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV-------TYLAVLSGC---SHGGMEDRGLAVFHEIVDC 391 (634)
Q Consensus 325 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~-------t~~~ll~a~---~~~g~~~~a~~~~~~~~~~ 391 (634)
|-.+|--.+..-...|+.+...++|++.... ++|-.. .|.-+=-+| ....+++.+.++|+...+
T Consensus 318 np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan--vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~- 394 (677)
T KOG1915|consen 318 NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN--VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD- 394 (677)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc--CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-
Confidence 5567777777777778888888888888874 676331 121111122 346778888888888875
Q ss_pred cCCccCChHHHHHHHHHHH----HcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCc
Q 006705 392 KDGFEPEIEHYGCVVDMLG----RAGRVGEALEFIKNM-PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAG 466 (634)
Q Consensus 392 ~~~~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 466 (634)
-++....++..+=-+|+ |+.++..|.+++... +.-|-..++...|..-.+.++++....++++.++..|.+..
T Consensus 395 --lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~ 472 (677)
T KOG1915|consen 395 --LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCY 472 (677)
T ss_pred --hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhH
Confidence 34555666666555554 678888888888765 66678888888888888888888888888888888888888
Q ss_pred hHHHHHHHHhhcCCcHHHHHHHHHHhhCCCccCCceeE
Q 006705 467 NYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSW 504 (634)
Q Consensus 467 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~ 504 (634)
++.-.+..=...|+++.|..+|....++.....|..-|
T Consensus 473 ~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 473 AWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 88888888888888888888888887765443444444
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4e-09 Score=104.84 Aligned_cols=257 Identities=11% Similarity=0.031 Sum_probs=206.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 006705 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSK 307 (634)
Q Consensus 228 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~ 307 (634)
.-.-..-+-..+++.+.++++....+.. ++....+..=|.++...|+..+-..+=..+++. .|..+.+|-++.--|.-
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHH
Confidence 3344455677899999999999988753 556666666677778888877777666667665 36778899999999999
Q ss_pred cCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 006705 308 CGSLTYSRRVFDNMSER---TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAV 384 (634)
Q Consensus 308 ~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~ 384 (634)
.|+..+|++.|.+...- -...|-.....|+-.|..++|+..+...-+. ++-....+.-+.--|...++.+.|.++
T Consensus 325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kLAe~F 402 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKLAEKF 402 (611)
T ss_pred hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHHHHHH
Confidence 99999999999987643 3468999999999999999999999877664 222223334444568889999999999
Q ss_pred HHHhhhccCCccC-ChHHHHHHHHHHHHcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCCchHHHHHH
Q 006705 385 FHEIVDCKDGFEP-EIEHYGCVVDMLGRAGRVGEALEFIKNMP--------FEP-TAAILGSLLGACRVHYNVDIGEFVG 454 (634)
Q Consensus 385 ~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~p-~~~~~~~ll~~~~~~~~~~~a~~~~ 454 (634)
|.+.. ++-| |+.+.+-+.-.....+.+.+|..+|+..- ..+ -..+|+.|..+|++.+.+++|...+
T Consensus 403 f~~A~----ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 403 FKQAL----AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHH----hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 99998 5555 67788888888888899999999998751 111 3446788889999999999999999
Q ss_pred HHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 455 QRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 455 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
++++.+.|.++.+|.+++-+|...|+++.|...|.+..
T Consensus 479 q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 479 QKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999875
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.9e-10 Score=116.43 Aligned_cols=275 Identities=10% Similarity=0.046 Sum_probs=121.9
Q ss_pred cHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC------CChhhHHHHHHHHHhcCChHHHHHHH
Q 006705 175 FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE------RDVVSCTAIISGYAQLGLDEEAIELF 248 (634)
Q Consensus 175 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~ 248 (634)
..+|...|...... ...+..+..-+..+|...+++++|+++|+.+.. .+...|.+.+--+.+ +-++..+
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 34555555553332 233335555666666666777777777666543 244455555533221 1222222
Q ss_pred HH-HhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh
Q 006705 249 RK-LQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVI 327 (634)
Q Consensus 249 ~~-m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~ 327 (634)
.+ +... -+-.+.||..+-++|+-.++.+.|...|.+.++.+ +.....|+.+..-+.....+|.|...|+.....|..
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 22 2211 12222334333333333333333333333333322 113334444444444444445555555544444443
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccC-ChHHHHHHH
Q 006705 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP-EIEHYGCVV 406 (634)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~li 406 (634)
.||+ |..+...|.+.++++.|+-.|+.+.+ +.| +.....++.
T Consensus 488 hYnA---------------------------------wYGlG~vy~Kqek~e~Ae~~fqkA~~----INP~nsvi~~~~g 530 (638)
T KOG1126|consen 488 HYNA---------------------------------WYGLGTVYLKQEKLEFAEFHFQKAVE----INPSNSVILCHIG 530 (638)
T ss_pred hhHH---------------------------------HHhhhhheeccchhhHHHHHHHhhhc----CCccchhHHhhhh
Confidence 3333 33333334444444444444444442 222 233333344
Q ss_pred HHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHH
Q 006705 407 DMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDV 484 (634)
Q Consensus 407 ~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 484 (634)
..+-+.|+.|+|++++++. .. +.|+..----...+...+++++|...++++.++-|++...|..++.+|-+.|+.+.|
T Consensus 531 ~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~A 610 (638)
T KOG1126|consen 531 RIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLA 610 (638)
T ss_pred HHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHH
Confidence 4444444444444444443 11 112222222233334445555555555555555555555555556666655655555
Q ss_pred HHHHHHHhh
Q 006705 485 TRVRELMKE 493 (634)
Q Consensus 485 ~~~~~~m~~ 493 (634)
..-|.-+.+
T Consensus 611 l~~f~~A~~ 619 (638)
T KOG1126|consen 611 LLHFSWALD 619 (638)
T ss_pred HHhhHHHhc
Confidence 555555543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=8e-09 Score=100.17 Aligned_cols=247 Identities=11% Similarity=0.109 Sum_probs=125.4
Q ss_pred HHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCCC------ChhhHHHHHHHHHhcCCh
Q 006705 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER------DVVSCTAIISGYAQLGLD 241 (634)
Q Consensus 168 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~ 241 (634)
++-...+.+++.+-.......|++.....-+-...++-...+++.|+.+|+++... |..+|+.++ |+++.+.
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~s 313 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhH
Confidence 34444455555555555666666555555554445555556666666666666542 333444443 2232221
Q ss_pred HHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 006705 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM 321 (634)
Q Consensus 242 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m 321 (634)
. +..+.+-...--+--..|...+.+-|+-.++.++|...|+..++.+ +.....|+.+..-|....+...|..-++..
T Consensus 314 k--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 314 K--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred H--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 1 1122111111111122344444455555555556666666555554 334455555555555555555555555544
Q ss_pred CC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCC
Q 006705 322 SE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398 (634)
Q Consensus 322 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~ 398 (634)
.+ +|-..|-.+.++|.-.+.+.-|+-.|++..+. -+-|+..+.+|..+|.+.+++++|..-|...... -..+
T Consensus 391 vdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~---~dte 465 (559)
T KOG1155|consen 391 VDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL---GDTE 465 (559)
T ss_pred HhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc---cccc
Confidence 42 34455555555565555555555555555543 2223455555555555566666665555555542 1234
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHh
Q 006705 399 IEHYGCVVDMLGRAGRVGEALEFIKN 424 (634)
Q Consensus 399 ~~~~~~li~~~~~~g~~~~A~~~~~~ 424 (634)
...+..|.++|-+.++.++|...|.+
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45555555555555555555555544
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.2e-09 Score=102.71 Aligned_cols=213 Identities=12% Similarity=0.107 Sum_probs=170.3
Q ss_pred cccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHH
Q 006705 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVEL 348 (634)
Q Consensus 272 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~ 348 (634)
-.|+.-.+.+-+..+++....++ ..|--+..+|....+.++..+.|++... .|..+|-.-.+.+.-.+++++|..=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 35778888888888888763333 3355566679999999999999998763 3667777777777788899999999
Q ss_pred HHHHHHcCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 006705 349 FNLMREENKVKPD-SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-P 426 (634)
Q Consensus 349 ~~~m~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 426 (634)
|++.... .|+ ...|..+--+..+.+.++++...|++..+ .++..+++|+.....+...++++.|.+.|+.. .
T Consensus 417 F~Kai~L---~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk---kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 417 FQKAISL---DPENAYAYIQLCCALYRQHKIAESMKTFEEAKK---KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHhhc---ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 9998864 454 46777777777788999999999999997 56778899999999999999999999999875 3
Q ss_pred CCCC---------HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 427 FEPT---------AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 427 ~~p~---------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
.+|+ ..+-.+++-.-.+ +++..|..+..++.+++|....+|..|+.+-.+.|+.++|+++|++..
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444 2222333322223 889999999999999999988999999999999999999999999764
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.8e-08 Score=93.97 Aligned_cols=374 Identities=12% Similarity=0.091 Sum_probs=232.2
Q ss_pred HhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC--CCcchHHHHHHHHH
Q 006705 58 FEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE--RNVVSWTAMISAYS 135 (634)
Q Consensus 58 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~ 135 (634)
...|...+..=.+...+..|+.+++..+..- +.-...|-..+.|=-..|++.-|+++|+.-.+ |+...|++.|.-=.
T Consensus 107 itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fEl 185 (677)
T KOG1915|consen 107 ITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFEL 185 (677)
T ss_pred chHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 3334444455556666777777777776542 21222344445555556778888888876543 88888888888888
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHh-CC-CCchHHHHHHHHHHHhcCCHHHH
Q 006705 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKS-NF-ESHIYVGSSLLDMYAKAGRIHEA 213 (634)
Q Consensus 136 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~-~~~~~~~~~li~~y~~~g~~~~A 213 (634)
+-...+.|..+|++.+- +.|+..+|.-....--+.|+...+++++..+++. |- ..+...+++....=.++..++.|
T Consensus 186 RykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERa 263 (677)
T KOG1915|consen 186 RYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERA 263 (677)
T ss_pred HhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888876 4688888877777777888888888888877664 11 11223444444444456666666
Q ss_pred HHHHc----cCCCC-------------------------------------------ChhhHHHHHHHHHhcCChHHHHH
Q 006705 214 RGVFE----CLPER-------------------------------------------DVVSCTAIISGYAQLGLDEEAIE 246 (634)
Q Consensus 214 ~~~~~----~m~~~-------------------------------------------~~~~~~~li~~~~~~g~~~~A~~ 246 (634)
.-+|. .++.. |-.+|--.+..--..|+.+...+
T Consensus 264 r~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire 343 (677)
T KOG1915|consen 264 RFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRE 343 (677)
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHH
Confidence 65553 22211 22345555555555677777777
Q ss_pred HHHHHhhcCCccCh-------hhHHHHHHHH---hcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHH----hcCCHH
Q 006705 247 LFRKLQVEGMISNY-------VTYASVLTAL---SGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYS----KCGSLT 312 (634)
Q Consensus 247 ~~~~m~~~g~~p~~-------~t~~~ll~~~---~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~ 312 (634)
+|++.... ++|-. ..|.-+=-+| ....+.+.+++++...++ =+|....++.-+=-+|+ ++.++.
T Consensus 344 ~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~ 421 (677)
T KOG1915|consen 344 TYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLT 421 (677)
T ss_pred HHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccH
Confidence 77777654 44422 1111111111 234567777777777766 24445555555444443 466777
Q ss_pred HHHHHHhhcC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 006705 313 YSRRVFDNMS--ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390 (634)
Q Consensus 313 ~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 390 (634)
.|++++.... .|-.-++...|..-.+.++++....+|++..+- -+-|..++......=...|+.+.|..+|.-.+.
T Consensus 422 ~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~--~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 422 GARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF--SPENCYAWSKYAELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred HHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 7777777665 355566666677777777777777777777764 233446666666666667777777777777775
Q ss_pred ccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 006705 391 CKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTAAILGSLLG 439 (634)
Q Consensus 391 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~ 439 (634)
.. .+..-...|.+.|+.=..+|.++.|..+++++ ...+...+|-++..
T Consensus 500 qp-~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~ 548 (677)
T KOG1915|consen 500 QP-ALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAK 548 (677)
T ss_pred Cc-ccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHH
Confidence 42 34444556677777777777777777777775 22345556766653
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.7e-10 Score=116.68 Aligned_cols=243 Identities=16% Similarity=0.157 Sum_probs=175.2
Q ss_pred hHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHhcCCHH-HHHHH
Q 006705 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE--IPSYVVLQNSLIDMYSKCGSLT-YSRRV 317 (634)
Q Consensus 241 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~-~A~~~ 317 (634)
..+|+..|...... +.-.......+-.+|-..+++++++.+|+.+.+.. ...+..+|.+.+--+-+.=.+. .|..+
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 45555555553322 22222344445555666666666666666555542 1234455555443322211111 12233
Q ss_pred HhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCcc
Q 006705 318 FDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP-DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFE 396 (634)
Q Consensus 318 f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 396 (634)
.+ +....+.+|-++...|.-+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+..+ .
T Consensus 414 i~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ---ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al------~ 483 (638)
T KOG1126|consen 414 ID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ---LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL------G 483 (638)
T ss_pred Hh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc---cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh------c
Confidence 33 2234678999999999999999999999999886 456 56788888777888899999999999876 3
Q ss_pred CChHHHHH---HHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHH
Q 006705 397 PEIEHYGC---VVDMLGRAGRVGEALEFIKNM-PFEPT-AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVIL 471 (634)
Q Consensus 397 p~~~~~~~---li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 471 (634)
.++.+|++ |.-.|.|.++++.|+-.|++. .+.|. .+....+...+.+.|+.++|..+++++.-++|.|+-.-...
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 46666665 566789999999999999987 55564 55566677888999999999999999999999999999999
Q ss_pred HHHHhhcCCcHHHHHHHHHHhhC
Q 006705 472 SNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 472 ~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
+.++...+++++|.+.++++++-
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh
Confidence 99999999999999999999864
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-09 Score=99.93 Aligned_cols=270 Identities=15% Similarity=0.136 Sum_probs=166.2
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhC-CCC--chHHHHHHHHHHHhcCCHHHH
Q 006705 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSN-FES--HIYVGSSLLDMYAKAGRIHEA 213 (634)
Q Consensus 137 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~--~~~~~~~li~~y~~~g~~~~A 213 (634)
+.++++|+++|-+|.+.. +-+..+-.++-+.+.+.|..+.|.++|..+.++- ++- -....-.|..-|.+.|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 468899999999998742 2233455667777888999999999998887642 111 123455677888899999999
Q ss_pred HHHHccCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcC
Q 006705 214 RGVFECLPERDV---VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE 290 (634)
Q Consensus 214 ~~~~~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~ 290 (634)
+.+|..+.+.+. .+.-.|+..|.+..+|++|++.-+++.+.+-.+..+-. ..
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI---Aq---------------------- 181 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI---AQ---------------------- 181 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH---HH----------------------
Confidence 999998876433 35566888899999999999998888876544433211 11
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHH
Q 006705 291 IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLA 367 (634)
Q Consensus 291 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ 367 (634)
.|.-|...+....+++.|..++.+..+ +.+..--.+...+...|++..|++.++...+. +..--..+...
T Consensus 182 ------fyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~ 254 (389)
T COG2956 182 ------FYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEM 254 (389)
T ss_pred ------HHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHH
Confidence 122233333344455555555555442 12333333445566677777777777777665 22222345566
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHh
Q 006705 368 VLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI-KNMPFEPTAAILGSLLGACRV 443 (634)
Q Consensus 368 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~p~~~~~~~ll~~~~~ 443 (634)
|..+|.+.|+.+++..++..+.+.+ ++...-..|.+.-....-.+.|...+ +++.-+|+...+..|+..-..
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~~----~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~ 327 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMETN----TGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLA 327 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHcc----CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhc
Confidence 6667777777777777777766542 23333333333333333344444433 344556777777777765443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.1e-09 Score=100.84 Aligned_cols=394 Identities=9% Similarity=0.059 Sum_probs=258.2
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHhhcCC----CCcch-HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhh----HH
Q 006705 93 VYLRTRLIVFYNKCECLSDARKMFDEMRE----RNVVS-WTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFT----FA 163 (634)
Q Consensus 93 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~ 163 (634)
-.+...|..-|.-.....+|+..++-+.+ ||.-. --.+-..+.+...+.+|+.+|+..+..-...+..+ .+
T Consensus 201 fsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ 280 (840)
T KOG2003|consen 201 FSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILN 280 (840)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHh
Confidence 33444566667766777888888877654 33322 12244567888899999999988776532233333 33
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC----------------CChhh
Q 006705 164 TVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE----------------RDVVS 227 (634)
Q Consensus 164 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----------------~~~~~ 227 (634)
.+--.+.+.|+++.|..-|+...+. .|+..+.-.|+-++..-|+-++..+.|.+|.. |+...
T Consensus 281 nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 281 NIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred hcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 3334567899999999999998876 57776666677777788999999999988752 22222
Q ss_pred HHH-----HHHHHHhcC--ChHHHHHHHHHHhhcCCccChhh-----HHH----------------HHHHHhcccchHHH
Q 006705 228 CTA-----IISGYAQLG--LDEEAIELFRKLQVEGMISNYVT-----YAS----------------VLTALSGLAALGHG 279 (634)
Q Consensus 228 ~~~-----li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t-----~~~----------------ll~~~~~~~~~~~a 279 (634)
.|. ++.-.-+.+ +.++++-.-.++..--+.||... ..+ -...+.+.|+++.|
T Consensus 359 l~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~a 438 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGA 438 (840)
T ss_pred HHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHH
Confidence 222 222222211 12222222222222223333210 000 01235678899999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHH------------------------------------HhcCCHHHHHHHHhhcCC
Q 006705 280 KQVHSHVLRFEIPSYVVLQNSLIDMY------------------------------------SKCGSLTYSRRVFDNMSE 323 (634)
Q Consensus 280 ~~i~~~~~~~~~~~~~~~~~~li~~~------------------------------------~~~g~~~~A~~~f~~m~~ 323 (634)
.+++....+..-..-....|.|--.+ ...|++++|.+.+++...
T Consensus 439 ieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ 518 (840)
T KOG2003|consen 439 IEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN 518 (840)
T ss_pred HHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc
Confidence 99988776654322222222111111 224677888888887777
Q ss_pred CChhhHHHHHH---HHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChH
Q 006705 324 RTVISWNAMLV---GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIE 400 (634)
Q Consensus 324 ~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 400 (634)
.|...-.+|.. .+-..|+.++|++.|-++..- +.-+...+..+.+.|....+..+|.+++..... -++.|+.
T Consensus 519 ndasc~ealfniglt~e~~~~ldeald~f~klh~i--l~nn~evl~qianiye~led~aqaie~~~q~~s---lip~dp~ 593 (840)
T KOG2003|consen 519 NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI--LLNNAEVLVQIANIYELLEDPAQAIELLMQANS---LIPNDPA 593 (840)
T ss_pred CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc---cCCCCHH
Confidence 66655444433 366788999999999877653 344667777888888888999999999888764 5677899
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHH-HHHHHHhh
Q 006705 401 HYGCVVDMLGRAGRVGEALEFIKNM-P-FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYV-ILSNLYAS 477 (634)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~ 477 (634)
+.+.|.+.|-+.|+-..|.+..-.- . ++-+..+..-|...|....-.+.+...++++.-+.|.. .-|. .+..++.+
T Consensus 594 ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~-~kwqlmiasc~rr 672 (840)
T KOG2003|consen 594 ILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ-SKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH-HHHHHHHHHHHHh
Confidence 9999999999999999999875443 2 23355555555666666667889999999999999985 4455 45566678
Q ss_pred cCCcHHHHHHHHHHhhC
Q 006705 478 AGRWEDVTRVRELMKEK 494 (634)
Q Consensus 478 ~g~~~~A~~~~~~m~~~ 494 (634)
.|++..|..+++....+
T Consensus 673 sgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRK 689 (840)
T ss_pred cccHHHHHHHHHHHHHh
Confidence 99999999999998654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.1e-08 Score=96.17 Aligned_cols=288 Identities=12% Similarity=0.113 Sum_probs=214.9
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCC--CCchHHHHHHHHHHHhcCC
Q 006705 132 SAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF--ESHIYVGSSLLDMYAKAGR 209 (634)
Q Consensus 132 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~ 209 (634)
.+|-...+.++++.-.......|+.-+...-+....+.-...|+++|..+|+.+.+... -.|..+|+.++-.--.+..
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 44555557778888888887777655544444444555677899999999999998741 1256677666543332222
Q ss_pred HH-HHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccC-hhhHHHHHHHHhcccchHHHHHHHHHHH
Q 006705 210 IH-EARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISN-YVTYASVLTALSGLAALGHGKQVHSHVL 287 (634)
Q Consensus 210 ~~-~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~i~~~~~ 287 (634)
+. -|..+++ +.+=-+.|...+.+-|.-.++.++|...|++..+.+ |. ...|+.+-.-|....+...|.+-++.++
T Consensus 315 Ls~LA~~v~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 315 LSYLAQNVSN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHHH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 22 2333332 222234567777888888999999999999998753 44 4567777788999999999999999999
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHH
Q 006705 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVT 364 (634)
Q Consensus 288 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t 364 (634)
+.+ |.|-..|-.|.++|.-.+...-|.-.|++..+ .|...|.+|...|.+.++.++|++.|.+.... | ..+...
T Consensus 392 di~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~-~-dte~~~ 468 (559)
T KOG1155|consen 392 DIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL-G-DTEGSA 468 (559)
T ss_pred hcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc-c-ccchHH
Confidence 987 67888999999999999999999999998763 48999999999999999999999999999886 3 346688
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhcc--CC-ccC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006705 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCK--DG-FEP-EIEHYGCVVDMLGRAGRVGEALEFIKNM 425 (634)
Q Consensus 365 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 425 (634)
+..|...+-+.++..+|.+.|..-++.. .| +.| .....--|..-+.+.+++++|...-...
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 9999999999999999999988776531 02 223 2233333566677888888887655443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.4e-12 Score=86.91 Aligned_cols=50 Identities=26% Similarity=0.523 Sum_probs=47.8
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 006705 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171 (634)
Q Consensus 122 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 171 (634)
||+++||++|++|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-11 Score=85.40 Aligned_cols=50 Identities=34% Similarity=0.655 Sum_probs=47.3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Q 006705 324 RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH 374 (634)
Q Consensus 324 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~ 374 (634)
||+++||++|.+|++.|++++|.++|++|.+. |++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~-g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKR-GIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999 999999999999999875
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.27 E-value=1e-09 Score=104.36 Aligned_cols=198 Identities=11% Similarity=0.076 Sum_probs=162.2
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 006705 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369 (634)
Q Consensus 293 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll 369 (634)
.....+..+...|.+.|++++|...|++..+ .+...+..+...|...|++++|.+.+++..+. .+.+...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHH
Confidence 3456677788889999999999999987653 35677888888999999999999999998875 234556777788
Q ss_pred HHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCc
Q 006705 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEP-TAAILGSLLGACRVHYNV 447 (634)
Q Consensus 370 ~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~ 447 (634)
..+...|++++|...++...+.. ........+..+...+.+.|++++|.+.+.+. ...| +...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDP-LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCH
Confidence 88899999999999999998642 22334567788888999999999999999886 2233 456788888899999999
Q ss_pred hHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 448 DIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 448 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
++|...+++..+..|.++..+..++.++...|+.++|..+.+.+..
T Consensus 186 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999988888888888899999999999999999888754
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-08 Score=97.87 Aligned_cols=285 Identities=12% Similarity=0.051 Sum_probs=182.4
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 006705 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216 (634)
Q Consensus 137 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 216 (634)
.|++..|.++..+-.+.+-.| ...|.....+.-..||.+.+-+++.++-+.--.++..+.-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 688888888888876665443 3445556667778888888888888887764466777777788888888888888776
Q ss_pred HccC---CCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCC
Q 006705 217 FECL---PERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPS 293 (634)
Q Consensus 217 ~~~m---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~ 293 (634)
.++. ..+++........+|.+.|++.+...++..|.+.|+--|+..-. +
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~-----------------l----------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR-----------------L----------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH-----------------H-----------
Confidence 6654 44677788888889999999999999999998887654432110 0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 006705 294 YVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370 (634)
Q Consensus 294 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~ 370 (634)
...+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++.++..+. +..|+. ..+-
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L----~~~~ 302 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRL----CRLI 302 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhH----HHHH
Confidence 011222333322222223333334444442 23444455566666666667777666666665 455552 2223
Q ss_pred HHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCchH
Q 006705 371 GCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTAAILGSLLGACRVHYNVDI 449 (634)
Q Consensus 371 a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~ 449 (634)
.+.+.++.+.-.+..+.-.+.+ + -++..+.+|...|.+.+.+.+|...|+.. +..|+..+|+-+..++...|+.+.
T Consensus 303 ~~l~~~d~~~l~k~~e~~l~~h-~--~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 303 PRLRPGDPEPLIKAAEKWLKQH-P--EDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEE 379 (400)
T ss_pred hhcCCCCchHHHHHHHHHHHhC-C--CChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHH
Confidence 4555666666666666555533 2 23356666777777777777777777654 556777777777777777777777
Q ss_pred HHHHHHHHh
Q 006705 450 GEFVGQRLM 458 (634)
Q Consensus 450 a~~~~~~~~ 458 (634)
|..+.++.+
T Consensus 380 A~~~r~e~L 388 (400)
T COG3071 380 AEQVRREAL 388 (400)
T ss_pred HHHHHHHHH
Confidence 776666655
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.2e-10 Score=116.84 Aligned_cols=264 Identities=16% Similarity=0.170 Sum_probs=190.8
Q ss_pred HHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 006705 246 ELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT 325 (634)
Q Consensus 246 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~ 325 (634)
.++..|...|+.||.+||..+|.-|+..|+.+.|- ++..|.-...+.+..+++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 46778889999999999999999999999999999 9999998888999999999999999999987775 788
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHH
Q 006705 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405 (634)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 405 (634)
..+|+.+..+|.++|+... ++..++ -...+...++..|.-..-..++..+.-.. +.-||.. ..
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq------------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p-~~lpda~---n~ 145 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ------------DLESINQSFSDHGVGSPERWFLMKIHCCP-HSLPDAE---NA 145 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH------------HHHHHHhhhhhhccCcHHHHHHhhcccCc-ccchhHH---HH
Confidence 8999999999999999865 333322 12233445556666555555555543221 4455544 34
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHH
Q 006705 406 VDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHY-NVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDV 484 (634)
Q Consensus 406 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 484 (634)
+....-.|.++.++++...+|...-......++.-+.... .++.-........+ .|+ +.+|..+...-..+|+.+-|
T Consensus 146 illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~~-s~~l~a~l~~alaag~~d~A 223 (1088)
T KOG4318|consen 146 ILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-APT-SETLHAVLKRALAAGDVDGA 223 (1088)
T ss_pred HHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CCC-hHHHHHHHHHHHhcCchhhH
Confidence 5556677888999999988864211111111344443332 23333333444444 454 78999999999999999999
Q ss_pred HHHHHHHhhCCCccCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCcccc
Q 006705 485 TRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVL 551 (634)
Q Consensus 485 ~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~ 551 (634)
..++..|+++|++..+.+.|-.+ .|..+-+ -++.+.+.|++.|+.|+.++..
T Consensus 224 k~ll~emke~gfpir~HyFwpLl--------~g~~~~q-------~~e~vlrgmqe~gv~p~seT~a 275 (1088)
T KOG4318|consen 224 KNLLYEMKEKGFPIRAHYFWPLL--------LGINAAQ-------VFEFVLRGMQEKGVQPGSETQA 275 (1088)
T ss_pred HHHHHHHHHcCCCcccccchhhh--------hcCccch-------HHHHHHHHHHHhcCCCCcchhH
Confidence 99999999999998888888643 2321211 2566788899999999997654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-08 Score=94.49 Aligned_cols=294 Identities=13% Similarity=0.145 Sum_probs=198.9
Q ss_pred CCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC-CChh------hHHHHHHHHHhcCChHHHH
Q 006705 173 FGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE-RDVV------SCTAIISGYAQLGLDEEAI 245 (634)
Q Consensus 173 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~------~~~~li~~~~~~g~~~~A~ 245 (634)
.+.++|...|-.|.+.. +.+..+.-+|.+.|-+.|.+|.|+++-+.+.+ ||.. +.-.|..-|...|-+|.|.
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 56777888887777643 44455566777888888888888887776654 3322 3334556677777788888
Q ss_pred HHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 006705 246 ELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT 325 (634)
Q Consensus 246 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~ 325 (634)
.+|..+.+.|. .-......++..|....+|++|..+-..+.+.+-.+... -+..
T Consensus 128 ~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~---eIAq---------------------- 181 (389)
T COG2956 128 DIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV---EIAQ---------------------- 181 (389)
T ss_pred HHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh---HHHH----------------------
Confidence 88877776542 223344555556666666666666655555544222111 0111
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHH
Q 006705 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS-VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404 (634)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 404 (634)
-|.-+...+....+.+.|..++.+..+. .|+. ..-..+.......|+++.|.+.++.+.+. +..--..+...
T Consensus 182 --fyCELAq~~~~~~~~d~A~~~l~kAlqa---~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--n~~yl~evl~~ 254 (389)
T COG2956 182 --FYCELAQQALASSDVDRARELLKKALQA---DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ--NPEYLSEVLEM 254 (389)
T ss_pred --HHHHHHHHHhhhhhHHHHHHHHHHHHhh---CccceehhhhhhHHHHhccchHHHHHHHHHHHHh--ChHHHHHHHHH
Confidence 2333555566677899999999998875 3444 33344556688999999999999999986 44445678889
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHH---hhcCC
Q 006705 405 VVDMLGRAGRVGEALEFIKNM-PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLY---ASAGR 480 (634)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~ 480 (634)
|..+|...|+.++...++.++ ...+....-..+-.......-.+.|...+.+-+...|+ ...+..|++.. +.-|+
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt-~~gf~rl~~~~l~daeeg~ 333 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPT-MRGFHRLMDYHLADAEEGR 333 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc-HHHHHHHHHhhhccccccc
Confidence 999999999999999998876 44555555555555555666677788888888888887 45566666664 34467
Q ss_pred cHHHHHHHHHHhhCCCccCCc
Q 006705 481 WEDVTRVRELMKEKAVTKDPG 501 (634)
Q Consensus 481 ~~~A~~~~~~m~~~~~~~~~~ 501 (634)
+.+..-.++.|....++..|.
T Consensus 334 ~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 334 AKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred hhhhHHHHHHHHHHHHhhcCC
Confidence 899999999998777766553
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.4e-07 Score=88.81 Aligned_cols=361 Identities=10% Similarity=0.025 Sum_probs=241.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHhhcCCCCcchH-HHHHHHHHhCCC-h-h-------------HHHHHHHHHHHCC-----
Q 006705 96 RTRLIVFYNKCECLSDARKMFDEMRERNVVSW-TAMISAYSQKAH-S-F-------------EALNLFIRMLRSD----- 154 (634)
Q Consensus 96 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~-~~li~~~~~~g~-~-~-------------~A~~~~~~m~~~g----- 154 (634)
-...+..|...++-++|...+.+.+..-...- |.|+.-+-+.|. . + -|++.+.-..+.+
T Consensus 100 ~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e 179 (564)
T KOG1174|consen 100 RRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNE 179 (564)
T ss_pred HHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchh
Confidence 34456677777888888888887776333333 333333333221 1 1 1222222222222
Q ss_pred ----------CCCChhhHHHHHHHHhc--cCCcHHHHHHHHHHHHh-CCCCchHHHHHHHHHHHhcCCHHHHHHHHccCC
Q 006705 155 ----------TEPNEFTFATVLTSCAG--AFGFELGKQIHSLIIKS-NFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221 (634)
Q Consensus 155 ----------~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 221 (634)
+.|+..+....+.+++. .++-..+.+.+..+... -++.++....++.+.|...|+.++|+..|++..
T Consensus 180 ~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~ 259 (564)
T KOG1174|consen 180 INSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTL 259 (564)
T ss_pred hhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHh
Confidence 23444444555555443 34444455555444333 467788999999999999999999999999876
Q ss_pred CCChhhHHH---HHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHH
Q 006705 222 ERDVVSCTA---IISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298 (634)
Q Consensus 222 ~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~ 298 (634)
.-|+.+... ....+.+.|+.++...+...+.... +-....|..-....-..++++.|..+-+..++.+ +.+...+
T Consensus 260 ~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~al 337 (564)
T KOG1174|consen 260 CANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEAL 337 (564)
T ss_pred hCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHH
Confidence 544433222 2334567888888888877776532 1222223333333445667777887777777654 2333344
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcC--CC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHH-HHHh-
Q 006705 299 NSLIDMYSKCGSLTYSRRVFDNMS--ER-TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL-SGCS- 373 (634)
Q Consensus 299 ~~li~~~~~~g~~~~A~~~f~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll-~a~~- 373 (634)
-.-...+...|++++|.-.|+... .| +..+|.-++..|...|++.+|.-+-+...+. ++-+..+...+. ..|.
T Consensus 338 ilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~ 415 (564)
T KOG1174|consen 338 ILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFP 415 (564)
T ss_pred HhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeecc
Confidence 333455677899999999998765 33 7899999999999999999999888776664 444555655442 2332
Q ss_pred ccCcHHHHHHHHHHhhhccCCccCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCchHHH
Q 006705 374 HGGMEDRGLAVFHEIVDCKDGFEPE-IEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTAAILGSLLGACRVHYNVDIGE 451 (634)
Q Consensus 374 ~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~ 451 (634)
....-++|..+++...+ +.|+ ....+.+...+...|+.++++.++++. ...||....+.|...++....+.+|.
T Consensus 416 dp~~rEKAKkf~ek~L~----~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am 491 (564)
T KOG1174|consen 416 DPRMREKAKKFAEKSLK----INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAM 491 (564)
T ss_pred CchhHHHHHHHHHhhhc----cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHH
Confidence 33345789999998874 4554 556677888899999999999999986 56789999999999999999999999
Q ss_pred HHHHHHhccCCCC
Q 006705 452 FVGQRLMEIEPEN 464 (634)
Q Consensus 452 ~~~~~~~~~~p~~ 464 (634)
..+..+++++|++
T Consensus 492 ~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 492 EYYYKALRQDPKS 504 (564)
T ss_pred HHHHHHHhcCccc
Confidence 9999999999987
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.5e-08 Score=92.62 Aligned_cols=273 Identities=12% Similarity=0.142 Sum_probs=198.1
Q ss_pred cCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHH
Q 006705 207 AGRIHEARGVFECLPE---RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283 (634)
Q Consensus 207 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~ 283 (634)
.|++..|+++..+-.+ .-+..|-.-+.+--+.|+.+.+-.++.+..+..-.++...+.+........|+++.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 5777777777765433 2334455555566677777777777777766422344444555555667777777777777
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-----------hhhHHHHHHHHHhcCChHHHHHHHHHH
Q 006705 284 SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT-----------VISWNAMLVGYSKHGMGREVVELFNLM 352 (634)
Q Consensus 284 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m 352 (634)
..+.+.+ +.++.+.......|.+.|++.....++.++.+.. ..+|+.+++-....+..+.-...|+..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 7777766 5566677777888888888888888888777532 246777777777666666666677777
Q ss_pred HHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHH--HHcCCHHHHHHHH----HhCC
Q 006705 353 REENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDML--GRAGRVGEALEFI----KNMP 426 (634)
Q Consensus 353 ~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~--~~~g~~~~A~~~~----~~m~ 426 (634)
... .+-+...-.+++.-+...|+.++|.++..+..++ +..|+ |...+ .+-++.+.-++.. +..+
T Consensus 256 pr~--lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~--~~D~~------L~~~~~~l~~~d~~~l~k~~e~~l~~h~ 325 (400)
T COG3071 256 PRK--LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR--QWDPR------LCRLIPRLRPGDPEPLIKAAEKWLKQHP 325 (400)
T ss_pred cHH--hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh--ccChh------HHHHHhhcCCCCchHHHHHHHHHHHhCC
Confidence 664 5556666777888889999999999999999886 66666 22222 2445544433333 3334
Q ss_pred CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 427 FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 427 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
.. +..+.+|...|.+++.+.+|...++.++...|+ ..+|..+++++.+.|+..+|.+++++...
T Consensus 326 ~~--p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 326 ED--PLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred CC--hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 44 478889999999999999999999999999998 68999999999999999999999998753
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-08 Score=104.85 Aligned_cols=232 Identities=16% Similarity=0.150 Sum_probs=159.7
Q ss_pred hhHHHHHHHHhcccchHHHHHHHHHHHHc-----CC-CCc-hhHHHHHHHHHHhcCCHHHHHHHHhhcCC-------C--
Q 006705 261 VTYASVLTALSGLAALGHGKQVHSHVLRF-----EI-PSY-VVLQNSLIDMYSKCGSLTYSRRVFDNMSE-------R-- 324 (634)
Q Consensus 261 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~-----~~-~~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~-------~-- 324 (634)
.|...+...|...|+++.|..++...++. |. .|. ....+.+...|...+++.+|..+|+++.. +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34555666667777777777776665543 10 111 22233466677777887777777776642 1
Q ss_pred --ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CCCH-HHHHHHHHHHhccCcHHHHHHHHHHhhhccC-Cc
Q 006705 325 --TVISWNAMLVGYSKHGMGREVVELFNLMREE----NKV-KPDS-VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-GF 395 (634)
Q Consensus 325 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~g~-~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~~ 395 (634)
-..+++.|..+|.+.|++++|...+++..+- .|. .|+. .-++.+...|...+.+++|..+++...+.+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 2346677777788888888777776655431 022 2333 3356666678999999999999988776531 12
Q ss_pred cC----ChHHHHHHHHHHHHcCCHHHHHHHHHhC-------CC--CCC-HHHHHHHHHHHHhcCCchHHHHHHHHHhcc-
Q 006705 396 EP----EIEHYGCVVDMLGRAGRVGEALEFIKNM-------PF--EPT-AAILGSLLGACRVHYNVDIGEFVGQRLMEI- 460 (634)
Q Consensus 396 ~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~--~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~- 460 (634)
.+ -..+++.|...|...|++++|.+++++. .. .+. ....+.|..+|.+.+++..|.+++.....+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 22 2467999999999999999999999886 11 122 446677889999999999998888776643
Q ss_pred ---CCC---CCchHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 461 ---EPE---NAGNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 461 ---~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
.|+ ...+|..|+.+|.+.|++++|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 344 34568899999999999999999999875
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.2e-08 Score=107.51 Aligned_cols=260 Identities=12% Similarity=-0.002 Sum_probs=183.3
Q ss_pred ChhhHHHHHHHHHh-----cCChHHHHHHHHHHhhcCCccChh-hHHHHHHHHh---------cccchHHHHHHHHHHHH
Q 006705 224 DVVSCTAIISGYAQ-----LGLDEEAIELFRKLQVEGMISNYV-TYASVLTALS---------GLAALGHGKQVHSHVLR 288 (634)
Q Consensus 224 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~---------~~~~~~~a~~i~~~~~~ 288 (634)
+..+|...+.+-.. .+..++|+.+|++..+. .|+.. .+..+..++. ..+++++|...++.+++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 45556666665322 13467999999999875 55543 4444433332 23457899999999998
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH-HH
Q 006705 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE--R-TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS-VT 364 (634)
Q Consensus 289 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~-~t 364 (634)
.+ +.+...+..+...+...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+. .|+. ..
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~ 408 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAA 408 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhh
Confidence 86 56778888898999999999999999998764 4 4667888999999999999999999999875 4543 23
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhccCCccC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHH
Q 006705 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP-EIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTAA-ILGSLLGAC 441 (634)
Q Consensus 365 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~ 441 (634)
+..++..+...|++++|...++++.+. ..| ++..+..+...|...|+.++|.+.+.++ +..|+.. .++.+...+
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~---~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQ---HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEY 485 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHh---ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 334444566689999999999998753 234 4556788889999999999999999987 4445544 445555666
Q ss_pred HhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCC
Q 006705 442 RVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495 (634)
Q Consensus 442 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 495 (634)
...| +.+...++.+.+..-.....+..+...|.-.|+-+.+..+ +++.+.|
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 6666 4666666666553222222223366677777887777776 7776654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.4e-08 Score=93.78 Aligned_cols=193 Identities=14% Similarity=0.095 Sum_probs=107.1
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 006705 225 VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDM 304 (634)
Q Consensus 225 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 304 (634)
...+..+...|...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+....+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4567777888888888888888888877643 2234455556666666777777777776666654 2334455555555
Q ss_pred HHhcCCHHHHHHHHhhcCCC-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHH
Q 006705 305 YSKCGSLTYSRRVFDNMSER-----TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMED 379 (634)
Q Consensus 305 ~~~~g~~~~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~ 379 (634)
|...|++++|.+.|++.... ....|..+...+...|++++|...|++.... .+.+...+..+...+...|+++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHH
Confidence 66666666666666554321 2234444455555555555555555555443 1222334444445555555555
Q ss_pred HHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q 006705 380 RGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKN 424 (634)
Q Consensus 380 ~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 424 (634)
+|...++...+. .+.+...+..++..+.+.|+.++|..+.+.
T Consensus 187 ~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 187 DARAYLERYQQT---YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 555555555432 122334444444555555555555554443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.6e-06 Score=84.66 Aligned_cols=434 Identities=13% Similarity=0.121 Sum_probs=252.1
Q ss_pred HHHhhhcCcHHHHHHHHHH-cCCCCC-HhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHH--HHHHHH--cC
Q 006705 33 LKTLCSNGQLTKALIEMAT-LGLEMR-FEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTR--LIVFYN--KC 106 (634)
Q Consensus 33 i~~~~~~~~~~~~~~~m~~-~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~y~--~~ 106 (634)
++.+.++++..++.....+ .++.|| ...+..=+-+..+.+.+++|..+.+. .+. ..+++. +=.+|+ +.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHHHHHHHHc
Confidence 3444555566655543322 122243 44455555566777888888744332 221 112222 234444 67
Q ss_pred CChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCCcHHHHHHHHHH
Q 006705 107 ECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEP-NEFTFATVLTSCAGAFGFELGKQIHSLI 185 (634)
Q Consensus 107 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 185 (634)
+..++|.+.++.....+..+...-...+-+.|++++|+++|+.+.+.+..- |...-..++.+-+. ... ..+
T Consensus 93 nk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~-------l~~-~~~ 164 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA-------LQV-QLL 164 (652)
T ss_pred ccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-------hhH-HHH
Confidence 899999999986555555566666677888999999999999997765432 11112222221111 111 012
Q ss_pred HHhCCCCc---hHHHHHHHHHHHhcCCHHHHHHHHccC--------CCCCh-----h-----hHHHHHHHHHhcCChHHH
Q 006705 186 IKSNFESH---IYVGSSLLDMYAKAGRIHEARGVFECL--------PERDV-----V-----SCTAIISGYAQLGLDEEA 244 (634)
Q Consensus 186 ~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~m--------~~~~~-----~-----~~~~li~~~~~~g~~~~A 244 (634)
......|+ ...|| ....+...|++.+|+++++.. .+.|. . .--.|...+...|+.++|
T Consensus 165 q~v~~v~e~syel~yN-~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYN-TACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HhccCCCcchHHHHHH-HHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 22222221 22344 445667889999999998876 22111 1 122345567788999999
Q ss_pred HHHHHHHhhcCCccChhhHHH---HHHHHhcccchHHH--HHHHHH-----------HHHcCCCCchhHHHHHHHHHHhc
Q 006705 245 IELFRKLQVEGMISNYVTYAS---VLTALSGLAALGHG--KQVHSH-----------VLRFEIPSYVVLQNSLIDMYSKC 308 (634)
Q Consensus 245 ~~~~~~m~~~g~~p~~~t~~~---ll~~~~~~~~~~~a--~~i~~~-----------~~~~~~~~~~~~~~~li~~~~~~ 308 (634)
.+++....+.. ++|...... =|.+.....++..+ ...++. .....-......-+.|+.+|.
T Consensus 244 ~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t-- 320 (652)
T KOG2376|consen 244 SSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT-- 320 (652)
T ss_pred HHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 99999998874 455533222 22333333332221 111110 110111112233345666654
Q ss_pred CCHHHHHHHHhhcCCCC-hhhHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHhccCcHHHHHHH
Q 006705 309 GSLTYSRRVFDNMSERT-VISWNAMLVGYS--KHGMGREVVELFNLMREENKVKPD-SVTYLAVLSGCSHGGMEDRGLAV 384 (634)
Q Consensus 309 g~~~~A~~~f~~m~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~ 384 (634)
+..+.++++-...+... ...+.+++.... +...+.+|.+++...-+. .+-+ .......+.-....|+++.|.++
T Consensus 321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 55667777777666433 334445544432 233577888888877664 3223 24445555667889999999999
Q ss_pred HH--------HhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-----CCCCCHH----HHHHHHHHHHhcCCc
Q 006705 385 FH--------EIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-----PFEPTAA----ILGSLLGACRVHYNV 447 (634)
Q Consensus 385 ~~--------~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~p~~~----~~~~ll~~~~~~~~~ 447 (634)
+. .+.+ +.-.+.+-.+++.+|.+.+..+.|.+++.+. ...+... +|.-+...-.++|+.
T Consensus 399 l~~~~~~~~ss~~~----~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~ 474 (652)
T KOG2376|consen 399 LSLFLESWKSSILE----AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNE 474 (652)
T ss_pred HHHHhhhhhhhhhh----hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCch
Confidence 98 4443 3334566778899999988877777776654 1112222 333344455678999
Q ss_pred hHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHH
Q 006705 448 DIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELM 491 (634)
Q Consensus 448 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 491 (634)
++|...++++.+..|++......++.+|++. +.+.|..+-+.+
T Consensus 475 ~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 475 EEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999999999999999999999999999986 456666654443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.2e-08 Score=103.19 Aligned_cols=145 Identities=9% Similarity=-0.075 Sum_probs=70.9
Q ss_pred cHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 006705 175 FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE--R-DVVSCTAIISGYAQLGLDEEAIELFRKL 251 (634)
Q Consensus 175 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 251 (634)
+++|...++++++.. +.+...+..+..++...|++++|...|++..+ | +...|..+...+...|++++|+..+++.
T Consensus 320 ~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A 398 (553)
T PRK12370 320 MIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINEC 398 (553)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 455556665555543 33445555555555556666666666655432 2 2344555555556666666666666665
Q ss_pred hhcCCccChh-hHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 006705 252 QVEGMISNYV-TYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS 322 (634)
Q Consensus 252 ~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 322 (634)
.+. .|+.. .+...+..+...|++++|...+..+.+...+.++..+..+...|...|+.++|...+.++.
T Consensus 399 l~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 399 LKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred Hhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 543 23221 1122222333345555555555554443322233334444444555555555555554443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-06 Score=90.66 Aligned_cols=398 Identities=13% Similarity=0.078 Sum_probs=255.5
Q ss_pred CCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhh-HH
Q 006705 88 CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE---RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFT-FA 163 (634)
Q Consensus 88 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~ 163 (634)
.+..|..+|..|.-+...+|+++.+.+.|++... .....|+.+-..|.-.|.-..|+.+++.-......|+..+ +-
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3567888999999999999999999999998764 3556799999999999999999999988765443354333 33
Q ss_pred HHHHHHh-ccCCcHHHHHHHHHHHHh--CC--CCchHHHHHHHHHHHhc-----------CCHHHHHHHHccCCC-----
Q 006705 164 TVLTSCA-GAFGFELGKQIHSLIIKS--NF--ESHIYVGSSLLDMYAKA-----------GRIHEARGVFECLPE----- 222 (634)
Q Consensus 164 ~ll~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~y~~~-----------g~~~~A~~~~~~m~~----- 222 (634)
..-..|. +.+..+++..+-.+++.. +. ......|-.+.-+|... ....++.+.+++..+
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3333343 456677777776666652 11 11223333344444322 112345555655432
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHH
Q 006705 223 RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302 (634)
Q Consensus 223 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li 302 (634)
|++..|- .--|+..++.+.|++..++..+.+-.-+...|..+.-.++..+++.+|..+.+.....- +.|-.....-+
T Consensus 478 p~~if~l--alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~ 554 (799)
T KOG4162|consen 478 PLVIFYL--ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKI 554 (799)
T ss_pred chHHHHH--HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhh
Confidence 3344333 33467788899999999999887656677778888788888899999999888766531 11111111111
Q ss_pred HHHHhcCCHHHHHHH--------------------------HhhcC----C-CChhhHHHHHHHHHhcCChHHHHHHHHH
Q 006705 303 DMYSKCGSLTYSRRV--------------------------FDNMS----E-RTVISWNAMLVGYSKHGMGREVVELFNL 351 (634)
Q Consensus 303 ~~~~~~g~~~~A~~~--------------------------f~~m~----~-~~~~~~~~li~~~~~~g~~~~A~~~~~~ 351 (634)
..-...++.++|... +..+. + .+...-..-+.+... -+...+..-..
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a-~~~~~~~se~~- 632 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA-SQLKSAGSELK- 632 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH-hhhhhcccccc-
Confidence 111123333333222 21111 0 121211111222211 11111100000
Q ss_pred HHHcCCCCCCH--------HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 006705 352 MREENKVKPDS--------VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK 423 (634)
Q Consensus 352 m~~~~g~~pd~--------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 423 (634)
|... -+.|.. ..+......+...+..++|..-+.+..+ ...-....|......+...|.+++|.+.|.
T Consensus 633 Lp~s-~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 633 LPSS-TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred cCcc-cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 2211 122222 2234455567888888999877777764 234467778888888999999999999988
Q ss_pred hC-CCCCC-HHHHHHHHHHHHhcCCchHHHH--HHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 424 NM-PFEPT-AAILGSLLGACRVHYNVDIGEF--VGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 424 ~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
.. ...|+ +.+..++...+...|+...+.. +...+.+++|.++..|..|+.++-+.|+.++|.+.|....+-
T Consensus 709 ~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 709 VALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 76 44554 5678889999999999998888 999999999999999999999999999999999999988654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.8e-07 Score=93.36 Aligned_cols=278 Identities=11% Similarity=0.032 Sum_probs=148.6
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCH
Q 006705 131 ISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRI 210 (634)
Q Consensus 131 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 210 (634)
..-+-..+++.+..++++...+.. ++....+..=|.++...|+..+-.-+=..+++. .|..+.+|-++.--|.-.|+.
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~ 328 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKY 328 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCc
Confidence 344555667777777777766542 334444444444555666655544444444443 355566676676666666777
Q ss_pred HHHHHHHccCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHH
Q 006705 211 HEARGVFECLPERD---VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287 (634)
Q Consensus 211 ~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~ 287 (634)
.+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-...-+.-+---|.+.+++..|.+++.+..
T Consensus 329 seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 329 SEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL 407 (611)
T ss_pred HHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 77777776544322 346777777777777777777766655432 11111112222333455666666666666655
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHH
Q 006705 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLA 367 (634)
Q Consensus 288 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ 367 (634)
... |.|+.+.+-+.-+....+.+.+|...|+....+ .+....+ ..--..+++.
T Consensus 408 ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~------------------------ik~~~~e--~~~w~p~~~N 460 (611)
T KOG1173|consen 408 AIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEV------------------------IKSVLNE--KIFWEPTLNN 460 (611)
T ss_pred hcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHH------------------------hhhcccc--ccchhHHHHh
Confidence 543 455555555555555555555665555543210 0000000 0012234555
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 006705 368 VLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTAAILGSLLGAC 441 (634)
Q Consensus 368 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~ 441 (634)
|..+|.+.+.+++|+..|+.... -.+.+..++.++.-.|...|+++.|.+.|.+. .+.||..+-..++..+
T Consensus 461 LGH~~Rkl~~~~eAI~~~q~aL~---l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 461 LGHAYRKLNKYEEAIDYYQKALL---LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH---cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 55566666666666666666554 22345556666666666666666666666554 4455555555555433
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.5e-08 Score=99.24 Aligned_cols=162 Identities=14% Similarity=0.154 Sum_probs=79.2
Q ss_pred hhHHHHHHHHhccCCcHHHHHHHHHHHHh-----CC-CCch-HHHHHHHHHHHhcCCHHHHHHHHccCCC----------
Q 006705 160 FTFATVLTSCAGAFGFELGKQIHSLIIKS-----NF-ESHI-YVGSSLLDMYAKAGRIHEARGVFECLPE---------- 222 (634)
Q Consensus 160 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~-~~~~-~~~~~li~~y~~~g~~~~A~~~~~~m~~---------- 222 (634)
.|+..+...|...|+++.|.+++.+.++. |. .|.+ ...+.+...|...+++.+|..+|+++..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34455666677777777777777666554 10 1111 1223355566666666666666655431
Q ss_pred C-ChhhHHHHHHHHHhcCChHHHHHHHHHHhhc-----CC-ccChh-hHHHHHHHHhcccchHHHHHHHHHHHHc---CC
Q 006705 223 R-DVVSCTAIISGYAQLGLDEEAIELFRKLQVE-----GM-ISNYV-TYASVLTALSGLAALGHGKQVHSHVLRF---EI 291 (634)
Q Consensus 223 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~~-t~~~ll~~~~~~~~~~~a~~i~~~~~~~---~~ 291 (634)
| -..+++.|...|.+.|++++|...+++..+- |. .|... -++.+...|...+.+++|..++....+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1 1234555556666666666665555544321 11 11111 2344444555555555555555543321 00
Q ss_pred C----CchhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 006705 292 P----SYVVLQNSLIDMYSKCGSLTYSRRVFDNM 321 (634)
Q Consensus 292 ~----~~~~~~~~li~~~~~~g~~~~A~~~f~~m 321 (634)
. .-..+++.|...|.+.|++++|+++|++.
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~a 393 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKA 393 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 1 11234444555555555555555554443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.8e-06 Score=81.85 Aligned_cols=218 Identities=9% Similarity=0.003 Sum_probs=174.5
Q ss_pred HHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 006705 235 YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYS 314 (634)
Q Consensus 235 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 314 (634)
+.-.|+...|...|+........++. .|.-+-..|....+.++....|....+.+ +-|+.+|..-..++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 34568889999999999876533333 27777788899999999999999999887 56788888888899999999999
Q ss_pred HHHHhhcCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhc
Q 006705 315 RRVFDNMSER---TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391 (634)
Q Consensus 315 ~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 391 (634)
..-|++...- ++..|-.+-.+..+.+++++++..|++..+. ++--...|+.....+...+++++|.+.|+...+.
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9999998753 5677777777888899999999999999986 6556678888889999999999999999998853
Q ss_pred cCCccCC---------hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHhcc
Q 006705 392 KDGFEPE---------IEHYGCVVDMLGRAGRVGEALEFIKNM-PFEP-TAAILGSLLGACRVHYNVDIGEFVGQRLMEI 460 (634)
Q Consensus 392 ~~~~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 460 (634)
+|+ +-+-.+++..-.+ +++..|.+++++. .+.| ....+.+|...-.+.|+.++|..+|++...+
T Consensus 492 ----E~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 492 ----EPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred ----ccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 443 2223333333333 8999999999987 4333 4567889999999999999999999987765
Q ss_pred C
Q 006705 461 E 461 (634)
Q Consensus 461 ~ 461 (634)
-
T Consensus 567 A 567 (606)
T KOG0547|consen 567 A 567 (606)
T ss_pred H
Confidence 3
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.5e-06 Score=80.31 Aligned_cols=410 Identities=12% Similarity=0.063 Sum_probs=225.0
Q ss_pred hccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCCChhHHHH
Q 006705 69 VNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE---RNVVSWTAMISAYSQKAHSFEALN 145 (634)
Q Consensus 69 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 145 (634)
...+|+..|..+++.-...+-.....+---+...|...|++++|..++.-+.+ ++...|-.|.-.+.-.|.+.+|..
T Consensus 33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHH
Confidence 34455666666665554333211112222233455566777777777765443 444556556555555666666666
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC--C
Q 006705 146 LFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE--R 223 (634)
Q Consensus 146 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~ 223 (634)
+-....+ +...-..++...-+.++-++-..+|..+...- .-.-+|.++..-.-.+.+|++++.++.. |
T Consensus 113 ~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ 182 (557)
T KOG3785|consen 113 IAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVLQDNP 182 (557)
T ss_pred HHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 5443211 22223334444455666666666666554321 2223344444444566777777776654 3
Q ss_pred ChhhHHH-HHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcc----c------------------------
Q 006705 224 DVVSCTA-IISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGL----A------------------------ 274 (634)
Q Consensus 224 ~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----~------------------------ 274 (634)
+-...|. |.-+|.+..-++-+.+++.--.++ .||. |+..-+.+|..- |
T Consensus 183 ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l 259 (557)
T KOG3785|consen 183 EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYL 259 (557)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHH
Confidence 3334443 333455666666666666655543 2332 222222333211 1
Q ss_pred ---------chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCC----
Q 006705 275 ---------ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGM---- 341 (634)
Q Consensus 275 ---------~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~---- 341 (634)
+-+.|.+++--+++. - +..--.|+-.|.+.+++++|..+.+++....+.-|-.-.-.++..|+
T Consensus 260 ~rHNLVvFrngEgALqVLP~L~~~--I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gS 335 (557)
T KOG3785|consen 260 CRHNLVVFRNGEGALQVLPSLMKH--I--PEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGS 335 (557)
T ss_pred HHcCeEEEeCCccHHHhchHHHhh--C--hHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCc
Confidence 111222222211111 1 11223456668999999999999988875544444322223334442
Q ss_pred ---hHHHHHHHHHHHHcCCCCCCHHH-HHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHH
Q 006705 342 ---GREVVELFNLMREENKVKPDSVT-YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417 (634)
Q Consensus 342 ---~~~A~~~~~~m~~~~g~~pd~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 417 (634)
..-|.+.|+-.-.. +..-|... -.++.+++.-...+++.+-+++.+.. -+..|...--.+..+++..|.+.+
T Consensus 336 reHlKiAqqffqlVG~S-a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s---YF~NdD~Fn~N~AQAk~atgny~e 411 (557)
T KOG3785|consen 336 REHLKIAQQFFQLVGES-ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES---YFTNDDDFNLNLAQAKLATGNYVE 411 (557)
T ss_pred HHHHHHHHHHHHHhccc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCcchhhhHHHHHHHHhcChHH
Confidence 34466666555444 44433321 23344445555678888888888875 233343333457899999999999
Q ss_pred HHHHHHhCC--CCCCHHHHHHHH-HHHHhcCCchHHHHHHHHHhccC-CCC-CchHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 418 ALEFIKNMP--FEPTAAILGSLL-GACRVHYNVDIGEFVGQRLMEIE-PEN-AGNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 418 A~~~~~~m~--~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~-p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
|.++|-++. .-.|..+|.+++ .+|...+..+.|..++ ++.+ |.+ ......+.+-|.+++.+=-|.+.|+.+.
T Consensus 412 aEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE 488 (557)
T KOG3785|consen 412 AEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELE 488 (557)
T ss_pred HHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 999998873 224677887777 5566777888776554 3333 222 2334467788999999999999999887
Q ss_pred hCCCccCCceeEE
Q 006705 493 EKAVTKDPGRSWI 505 (634)
Q Consensus 493 ~~~~~~~~~~s~~ 505 (634)
..+.. | -.|-
T Consensus 489 ~lDP~--p-EnWe 498 (557)
T KOG3785|consen 489 ILDPT--P-ENWE 498 (557)
T ss_pred ccCCC--c-cccC
Confidence 65433 3 2575
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.8e-08 Score=93.36 Aligned_cols=194 Identities=11% Similarity=0.024 Sum_probs=135.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Q 006705 297 LQNSLIDMYSKCGSLTYSRRVFDNMSE--R-TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373 (634)
Q Consensus 297 ~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~ 373 (634)
+|-.|-..|.+..+++.|..+|.+-.+ | |+....-+...+-..++.++|.++|+...+. .+.+......+...|.
T Consensus 258 TfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yf 335 (478)
T KOG1129|consen 258 TFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL--HPINVEAIACIAVGYF 335 (478)
T ss_pred HHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--CCccceeeeeeeeccc
Confidence 333344445555555555555554442 2 2222333445555566777777777777664 3344455556666666
Q ss_pred ccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCch
Q 006705 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM---PFEPT--AAILGSLLGACRVHYNVD 448 (634)
Q Consensus 374 ~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~~~~~ 448 (634)
-.++++-|+.+++.+... |+. +++.|+.+.-.|.-.+++|-++.-|.+. ...|+ ..+|..+.......||..
T Consensus 336 Y~~~PE~AlryYRRiLqm--G~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~n 412 (478)
T KOG1129|consen 336 YDNNPEMALRYYRRILQM--GAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFN 412 (478)
T ss_pred cCCChHHHHHHHHHHHHh--cCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchH
Confidence 777777888888777765 543 5667777777777777777777777664 11233 457888887778889999
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCC
Q 006705 449 IGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495 (634)
Q Consensus 449 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 495 (634)
.|.+.++-++..+|++..+++.|.-+-.+.|++++|..+++...+..
T Consensus 413 lA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 413 LAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 99999999999999999999999999999999999999999887653
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1e-07 Score=93.70 Aligned_cols=211 Identities=14% Similarity=0.068 Sum_probs=148.5
Q ss_pred cchHHHHHHHHHHHHcC-CCC--chhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHH
Q 006705 274 AALGHGKQVHSHVLRFE-IPS--YVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVE 347 (634)
Q Consensus 274 ~~~~~a~~i~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 347 (634)
+..+.+..-+.+++... ..| ....+..+...|.+.|+.++|...|++..+ .+...|+.+...|...|++++|++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34455666666666432 222 245677788889999999999999988763 367889999999999999999999
Q ss_pred HHHHHHHcCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 006705 348 LFNLMREENKVKPD-SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM- 425 (634)
Q Consensus 348 ~~~~m~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m- 425 (634)
.|++..+. .|+ ..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.|.+.
T Consensus 120 ~~~~Al~l---~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~----~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 120 AFDSVLEL---DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD----DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 99999864 454 567788888888999999999999998854 454332222223345677899999999664
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHh-------ccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCC
Q 006705 426 -PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLM-------EIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495 (634)
Q Consensus 426 -~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 495 (634)
...|+...| .......|+...+. .++.+. ++.|+.+..|..++.+|.+.|++++|...|++..+.+
T Consensus 193 ~~~~~~~~~~---~~~~~~lg~~~~~~-~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 193 EKLDKEQWGW---NIVEFYLGKISEET-LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hhCCccccHH---HHHHHHccCCCHHH-HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 223333222 12223355555442 333333 3445566789999999999999999999999998654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.6e-05 Score=78.32 Aligned_cols=424 Identities=14% Similarity=0.116 Sum_probs=253.0
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHh-CCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCCh
Q 006705 62 DTLLNACVNQRTLRGGQRVHAHMIKT-CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHS 140 (634)
Q Consensus 62 ~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 140 (634)
..-+......+++..-+..|+..+.. .+..-..+|.-.+......|-.+-+.++++...+-++..-+--|..++..++.
T Consensus 106 l~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~ 185 (835)
T KOG2047|consen 106 LDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRL 185 (835)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccch
Confidence 33344445566677777777766554 22333456666677666777777888888877776666677778888888888
Q ss_pred hHHHHHHHHHHHCC------CCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCC--CCc--hHHHHHHHHHHHhcCCH
Q 006705 141 FEALNLFIRMLRSD------TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF--ESH--IYVGSSLLDMYAKAGRI 210 (634)
Q Consensus 141 ~~A~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~--~~~~~~li~~y~~~g~~ 210 (634)
++|-+.+...+... .+.+...|..+-...++..+.-....+ +.+++.|+ -+| ...|++|.+-|.+.|.+
T Consensus 186 ~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ 264 (835)
T KOG2047|consen 186 DEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRSGLF 264 (835)
T ss_pred HHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHhhhh
Confidence 88888877775431 233444555555555544433332222 12222332 233 36789999999999999
Q ss_pred HHHHHHHccCCCC--ChhhHHHHHHHHHh----------------cCC------hHHHHHHHHHHhhcCC----------
Q 006705 211 HEARGVFECLPER--DVVSCTAIISGYAQ----------------LGL------DEEAIELFRKLQVEGM---------- 256 (634)
Q Consensus 211 ~~A~~~~~~m~~~--~~~~~~~li~~~~~----------------~g~------~~~A~~~~~~m~~~g~---------- 256 (634)
+.|..+|++.... .+.-++.+-.+|++ .|+ ++-.+.-|+.+...+.
T Consensus 265 ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQ 344 (835)
T KOG2047|consen 265 EKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQ 344 (835)
T ss_pred HHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhc
Confidence 9999999875432 22223333333332 111 1222223333322210
Q ss_pred -ccChhhHHHHHHHHhcccchHHHHHHHHHHHHcC-----CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-----
Q 006705 257 -ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE-----IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT----- 325 (634)
Q Consensus 257 -~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~----- 325 (634)
+-+..+|..-.. ...|+..+-...+.++++.= ...-...|..+.+.|-..|+++.|+.+|++..+-+
T Consensus 345 n~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~ 422 (835)
T KOG2047|consen 345 NPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE 422 (835)
T ss_pred CCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH
Confidence 011112211111 12345556666677766541 11224568889999999999999999999987532
Q ss_pred --hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-----------------CHHHHHHHHHHHhccCcHHHHHHHHH
Q 006705 326 --VISWNAMLVGYSKHGMGREVVELFNLMREENKVKP-----------------DSVTYLAVLSGCSHGGMEDRGLAVFH 386 (634)
Q Consensus 326 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-----------------d~~t~~~ll~a~~~~g~~~~a~~~~~ 386 (634)
..+|-.-...-.++.+++.|+++.+..... .-.| +...|...++.--..|-++....+++
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYd 501 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYD 501 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 235666666677888999999988776542 1111 11223333444445567788888888
Q ss_pred HhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-C-CCCH-HHHHHHHHHHHh---cCCchHHHHHHHHHhc
Q 006705 387 EIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-P-F-EPTA-AILGSLLGACRV---HYNVDIGEFVGQRLME 459 (634)
Q Consensus 387 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~-~p~~-~~~~~ll~~~~~---~~~~~~a~~~~~~~~~ 459 (634)
.+... .+ .++...-.....+-....++++.+++++- + + .|++ ..|++.+.-+.+ ....+.|..+|+++++
T Consensus 502 riidL--ri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 502 RIIDL--RI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHH--hc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 88865 22 23333333444556777889999999985 2 2 3444 479888865543 2357889999999999
Q ss_pred cCCCCC--chHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 460 IEPENA--GNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 460 ~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
.-|+.. ..|...+..=-+-|.-..|..++++..
T Consensus 579 ~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 579 GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 888522 123333333345588888888888864
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.1e-05 Score=76.29 Aligned_cols=393 Identities=11% Similarity=0.103 Sum_probs=223.2
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHhhcCC-----CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 006705 93 VYLRTRLIVFYNKCECLSDARKMFDEMRE-----RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167 (634)
Q Consensus 93 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 167 (634)
+.+|-.-+....+.|++..-+.+|+.... .-...|...+.-....|-++-++.+|++.++- .|. .-.--+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~--~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APE--AREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHH--HHHHHHH
Confidence 45677778888899999999999987543 23457999999999999999999999999873 443 3555677
Q ss_pred HHhccCCcHHHHHHHHHHHHh------CCCCchHHHHHHHHHHHhcCCHH---HHHHHHccCCCC--C--hhhHHHHHHH
Q 006705 168 SCAGAFGFELGKQIHSLIIKS------NFESHIYVGSSLLDMYAKAGRIH---EARGVFECLPER--D--VVSCTAIISG 234 (634)
Q Consensus 168 ~~~~~~~~~~a~~~~~~~~~~------g~~~~~~~~~~li~~y~~~g~~~---~A~~~~~~m~~~--~--~~~~~~li~~ 234 (634)
.++..+++++|.+.+..++.. ..+.+...|.-+-+..++.-+.- ....+++.+..+ | ...|++|..-
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 788899999999998877632 12556667777777766654322 234555555543 3 3479999999
Q ss_pred HHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccc----------------------hHHHHHHHHHHHHcC--
Q 006705 235 YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA----------------------LGHGKQVHSHVLRFE-- 290 (634)
Q Consensus 235 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~----------------------~~~a~~i~~~~~~~~-- 290 (634)
|.+.|.+++|-++|++..+.- ....-|+.+.++|+.-.. ++-...-++.+....
T Consensus 258 YIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 999999999999999987653 334445555555543221 111122222222211
Q ss_pred ---------CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---C------ChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 006705 291 ---------IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---R------TVISWNAMLVGYSKHGMGREVVELFNLM 352 (634)
Q Consensus 291 ---------~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~------~~~~~~~li~~~~~~g~~~~A~~~~~~m 352 (634)
-+.++..|..-+..| .|+..+-..+|.+... | -...|..+..-|-.+|+.+.|..+|++.
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 012222332222222 2333444444443321 1 1234666666666667777777777666
Q ss_pred HHcCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCC--------ccC-------ChHHHHHHHHHHHHcCC
Q 006705 353 REENKVKPD---SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG--------FEP-------EIEHYGCVVDMLGRAGR 414 (634)
Q Consensus 353 ~~~~g~~pd---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--------~~p-------~~~~~~~li~~~~~~g~ 414 (634)
.+. ..+-- ..+|..-...=.+..+++.|+.+.+.......+ ..| +...|..+++..-..|-
T Consensus 414 ~~V-~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 414 TKV-PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hcC-CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 543 11110 122222223333445556666665555432100 000 23445556666666666
Q ss_pred HHHHHHHHHhC---CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCC--CCchHHHHHHHH-hh--cCCcHHHH
Q 006705 415 VGEALEFIKNM---PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE--NAGNYVILSNLY-AS--AGRWEDVT 485 (634)
Q Consensus 415 ~~~A~~~~~~m---~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~-~~--~g~~~~A~ 485 (634)
++....+++++ .+ .|..+. .....+..|.-++++.+++++...+.|- -...|+..+.-+ .+ .-+.+.|.
T Consensus 493 festk~vYdriidLriaTPqii~--NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIATPQIII--NYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHH--HHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 66666666665 11 222221 1222234555567777777777766543 112222222222 22 23677888
Q ss_pred HHHHHHhhCCCc
Q 006705 486 RVRELMKEKAVT 497 (634)
Q Consensus 486 ~~~~~m~~~~~~ 497 (634)
.+|++..+ |.+
T Consensus 571 dLFEqaL~-~Cp 581 (835)
T KOG2047|consen 571 DLFEQALD-GCP 581 (835)
T ss_pred HHHHHHHh-cCC
Confidence 88888876 443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.1e-05 Score=78.20 Aligned_cols=423 Identities=11% Similarity=0.036 Sum_probs=234.8
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCC
Q 006705 62 DTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE---RNVVSWTAMISAYSQKA 138 (634)
Q Consensus 62 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 138 (634)
-.+++.| ..+.+..++...+.+++. ++.-..+.....-.+...|+.++|......-.. ++.+.|..+.-.+-...
T Consensus 12 ~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK 89 (700)
T KOG1156|consen 12 RRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK 89 (700)
T ss_pred HHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh
Confidence 3344433 445666677777666663 222222222222223345777777777765544 45677888877777778
Q ss_pred ChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 006705 139 HSFEALNLFIRMLRSDTEP-NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF 217 (634)
Q Consensus 139 ~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 217 (634)
++++|+..|+..... .| |...+.-+--.-++.++++.......+..+.. +.....|..++-++.-.|+...|..+.
T Consensus 90 ~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888887763 34 33444444444456677776666666665542 334555667777777777777777766
Q ss_pred ccCCC-----CChhhHHHH------HHHHHhcCChHHHHHHHHHHhhcCCccChhhHH-HHHHHHhcccchHHHHHHHHH
Q 006705 218 ECLPE-----RDVVSCTAI------ISGYAQLGLDEEAIELFRKLQVEGMISNYVTYA-SVLTALSGLAALGHGKQVHSH 285 (634)
Q Consensus 218 ~~m~~-----~~~~~~~~l------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~i~~~ 285 (634)
+...+ ++...+.-. ......+|..++|++.+..-... ..|...+. .-...+.+.+++++|..++..
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 54422 222222211 23345667777777766554432 22332222 233445677788888888887
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHH-HHHhhcCCC--ChhhHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCCC
Q 006705 286 VLRFEIPSYVVLQNSLIDMYSKCGSLTYSR-RVFDNMSER--TVISWNAMLVGYSKHGMG-REVVELFNLMREENKVKPD 361 (634)
Q Consensus 286 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~f~~m~~~--~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~g~~pd 361 (634)
++... |.+...|--+..++.+--+.-++. .+|....+. -...-..+--........ +..-+++..+.+. |++|-
T Consensus 245 Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K-g~p~v 322 (700)
T KOG1156|consen 245 LLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSK-GVPSV 322 (700)
T ss_pred HHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhc-CCCch
Confidence 77764 333344444444554333333333 555544421 000000000001111222 2333455566666 77654
Q ss_pred HHHHHHHHHHHhccCcHH---H-HHHHHHHhhhccC------C--ccCChH--HHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 006705 362 SVTYLAVLSGCSHGGMED---R-GLAVFHEIVDCKD------G--FEPEIE--HYGCVVDMLGRAGRVGEALEFIKNM-P 426 (634)
Q Consensus 362 ~~t~~~ll~a~~~~g~~~---~-a~~~~~~~~~~~~------~--~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m-~ 426 (634)
-..+.++ +-.....+ + +..+...+..... + -+|+.. ++-.++..|-+.|+++.|...++.. .
T Consensus 323 f~dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId 399 (700)
T KOG1156|consen 323 FKDLRSL---YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID 399 (700)
T ss_pred hhhhHHH---HhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 3333333 22211111 1 1222222221100 0 034443 4456778888999999999999886 4
Q ss_pred CCCCHHH-HHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCCC
Q 006705 427 FEPTAAI-LGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496 (634)
Q Consensus 427 ~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 496 (634)
..|+.+- |..-...+...|+++.|...++.+.+++-.|...-.--+.-..++.+.++|.++.....+.|.
T Consensus 400 HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 400 HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 4566443 333446678888999999999999999877654444566667788999999999988876664
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.8e-05 Score=79.99 Aligned_cols=408 Identities=10% Similarity=-0.013 Sum_probs=256.8
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC----
Q 006705 46 LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE---- 121 (634)
Q Consensus 46 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---- 121 (634)
+.++....+.-|...|-.+--+....|+++.+.+.|+.....- ......|+.+-..|..+|.-..|..++++-..
T Consensus 311 ~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 311 LRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred HHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 3445555567788889999888899999999999999887654 33466788899999999999999999987543
Q ss_pred CCcchHHHHH-HHHH-hCCChhHHHHHHHHHHHC------CCCCChhhHHHHHHHHhcc----C-------CcHHHHHHH
Q 006705 122 RNVVSWTAMI-SAYS-QKAHSFEALNLFIRMLRS------DTEPNEFTFATVLTSCAGA----F-------GFELGKQIH 182 (634)
Q Consensus 122 ~~~~~~~~li-~~~~-~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~----~-------~~~~a~~~~ 182 (634)
|+..+--.|+ ..|. +-+..++++++-.+.... .+.|- .|..+.-+|... . ...++.+.+
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~--~~l~lGi~y~~~A~~a~~~seR~~~h~kslqal 467 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPR--GYLFLGIAYGFQARQANLKSERDALHKKSLQAL 467 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhh--HHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHH
Confidence 3333332333 2233 346777777776666551 13333 333333333211 1 134566777
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccC----CCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCcc
Q 006705 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECL----PERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS 258 (634)
Q Consensus 183 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 258 (634)
+..++.+ +.|+.+.--|.--|+..++++.|.+...+. ...+...|.-+.-.+...+++.+|+.+.+..... .|
T Consensus 468 e~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--~~ 544 (799)
T KOG4162|consen 468 EEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--FG 544 (799)
T ss_pred HHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hh
Confidence 7777765 223333223555678888999998776654 3457889999999999999999999998876654 11
Q ss_pred C-hhhHHHHHHHHhcccchHHHHHHHH-----------------HHH----HcCC-------CCchhHHHHHHHHHH---
Q 006705 259 N-YVTYASVLTALSGLAALGHGKQVHS-----------------HVL----RFEI-------PSYVVLQNSLIDMYS--- 306 (634)
Q Consensus 259 ~-~~t~~~ll~~~~~~~~~~~a~~i~~-----------------~~~----~~~~-------~~~~~~~~~li~~~~--- 306 (634)
+ ......-+..-...++.+++..... +.. +.|+ .....++..+.....
T Consensus 545 ~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~ 624 (799)
T KOG4162|consen 545 DNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL 624 (799)
T ss_pred hhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh
Confidence 1 1100000111111222222221111 111 1111 111222222222111
Q ss_pred hcCCHHHHHHHHhhcCCCC------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHH
Q 006705 307 KCGSLTYSRRVFDNMSERT------VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDR 380 (634)
Q Consensus 307 ~~g~~~~A~~~f~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~ 380 (634)
+.-..+.....+...+.|+ ...|......+.+.++.++|...+.+.... .+-....|......+...|..++
T Consensus 625 ~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~E 702 (799)
T KOG4162|consen 625 KSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEE 702 (799)
T ss_pred hhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHH
Confidence 1111111112222222333 235666777888999999999888888754 33333455555566777899999
Q ss_pred HHHHHHHhhhccCCccC-ChHHHHHHHHHHHHcCCHHHHHH--HHHhC-CCC-CCHHHHHHHHHHHHhcCCchHHHHHHH
Q 006705 381 GLAVFHEIVDCKDGFEP-EIEHYGCVVDMLGRAGRVGEALE--FIKNM-PFE-PTAAILGSLLGACRVHYNVDIGEFVGQ 455 (634)
Q Consensus 381 a~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~--~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~ 455 (634)
|.+.|.... .+.| ++...+++..++.+.|+..-|.. +...+ ... .+...|..+...+.+.|+.+.|...|.
T Consensus 703 A~~af~~Al----~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 703 AKEAFLVAL----ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred HHHHHHHHH----hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 999999887 4455 47788999999999998777776 77776 333 467799999999999999999999999
Q ss_pred HHhccCCCCC
Q 006705 456 RLMEIEPENA 465 (634)
Q Consensus 456 ~~~~~~p~~~ 465 (634)
-+.++++.+|
T Consensus 779 aa~qLe~S~P 788 (799)
T KOG4162|consen 779 AALQLEESNP 788 (799)
T ss_pred HHHhhccCCC
Confidence 9999988765
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.6e-07 Score=87.23 Aligned_cols=228 Identities=10% Similarity=0.048 Sum_probs=175.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 006705 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKC 308 (634)
Q Consensus 229 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~ 308 (634)
+.|..+|.+.|.+.+|.+.|+.-... .|-..||..+-.+|.+..+...|..++.+-++. ++.|+....-....+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56778888888888888888877765 455567777778888888888888888877765 355666666677777888
Q ss_pred CCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 006705 309 GSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVF 385 (634)
Q Consensus 309 g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~ 385 (634)
++.++|.++++...+ .++.+...+..+|.-.++++-|+..|+++.+. |+. +...|+.+.-+|.-.+.++-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHh-cCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 888888888887764 36667777778888889999999999999888 664 5667777777888888888888888
Q ss_pred HHhhhccCCccCC--hHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccC
Q 006705 386 HEIVDCKDGFEPE--IEHYGCVVDMLGRAGRVGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIE 461 (634)
Q Consensus 386 ~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 461 (634)
+..... .-.|+ .++|-.|.......|++.-|.+.|+-. ....+...++.|.-.-.+.|+++.|..++..+....
T Consensus 382 ~RAlst--at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 382 QRALST--ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhh--ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 887754 22343 567877887788889999999888875 223346678888877888899999999988888888
Q ss_pred CC
Q 006705 462 PE 463 (634)
Q Consensus 462 p~ 463 (634)
|.
T Consensus 460 P~ 461 (478)
T KOG1129|consen 460 PD 461 (478)
T ss_pred cc
Confidence 86
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.8e-05 Score=82.60 Aligned_cols=302 Identities=11% Similarity=0.098 Sum_probs=196.5
Q ss_pred HHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC--CCcch-HHHHHHHHHhC-----
Q 006705 66 NACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE--RNVVS-WTAMISAYSQK----- 137 (634)
Q Consensus 66 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~----- 137 (634)
..+...|+++.|++.+..-.+. +.............|.+.|+.++|..++..+.. |+-.. |..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence 4456788999999888765443 333455667778888999999999999998876 43334 34444444222
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCc-HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 006705 138 AHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGF-ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216 (634)
Q Consensus 138 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 216 (634)
...+...++|+++... -|.......+.-.+..-..+ ..+...+..+++.|+|+ +++.|-..|......+-..++
T Consensus 91 ~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 2466778888888664 35444443333223222222 23445556666677543 566677777755555555555
Q ss_pred HccCC------------------CCChhhH--HHHHHHHHhcCChHHHHHHHHHHhhcCCccC-hhhHHHHHHHHhcccc
Q 006705 217 FECLP------------------ERDVVSC--TAIISGYAQLGLDEEAIELFRKLQVEGMISN-YVTYASVLTALSGLAA 275 (634)
Q Consensus 217 ~~~m~------------------~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~ 275 (634)
+.... .|....| .-+...|-..|++++|++++++..+. .|+ ...|..-...+-+.|+
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCC
Confidence 44321 1222234 55567788889999999999988875 455 4567777788888999
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh------h----hH--HHHHHHHHhcCChH
Q 006705 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTV------I----SW--NAMLVGYSKHGMGR 343 (634)
Q Consensus 276 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~------~----~~--~~li~~~~~~g~~~ 343 (634)
+.+|.+..+.....+ ..|..+-+-.+..+.++|++++|.+++.....++. . .| .....+|.+.|++.
T Consensus 244 ~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 244 LKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999888876 45777878888888899999999988887765542 1 23 23456788889999
Q ss_pred HHHHHHHHHHHcC-CCCCCHHHHHHHHHHHhccCcHH
Q 006705 344 EVVELFNLMREEN-KVKPDSVTYLAVLSGCSHGGMED 379 (634)
Q Consensus 344 ~A~~~~~~m~~~~-g~~pd~~t~~~ll~a~~~~g~~~ 379 (634)
.|++.|..+.+.. .+.-|..-|.+. |.+.+-+.
T Consensus 323 ~ALk~~~~v~k~f~~~~~DQfDFH~Y---c~RK~t~r 356 (517)
T PF12569_consen 323 LALKRFHAVLKHFDDFEEDQFDFHSY---CLRKMTLR 356 (517)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHH---HHhhccHH
Confidence 9998888776641 233444444332 55555443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=2e-06 Score=84.64 Aligned_cols=115 Identities=12% Similarity=-0.089 Sum_probs=61.5
Q ss_pred ChhHHHHHHHHHHHCC-CCCC--hhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 006705 139 HSFEALNLFIRMLRSD-TEPN--EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215 (634)
Q Consensus 139 ~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 215 (634)
..+.++.-+.+++... ..|+ ...|......+...|+.+.|...+..+++.. +.+...|+.+...|...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3444555555554321 1121 1234444444555566666666666655543 3345556666666666666666666
Q ss_pred HHccCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 006705 216 VFECLPE--R-DVVSCTAIISGYAQLGLDEEAIELFRKLQVE 254 (634)
Q Consensus 216 ~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 254 (634)
.|++..+ | +..+|..+...+...|++++|++.|++..+.
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 6665532 2 3445555666666666666666666666553
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.1e-07 Score=80.32 Aligned_cols=164 Identities=15% Similarity=0.109 Sum_probs=139.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHH
Q 006705 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407 (634)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~ 407 (634)
+...+.-+|.+.|+...|..-+++..+. -+.+..++..+...|.+.|..+.|.+.|+...+.. +-+-.+.|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~---p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA---PNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC---CCccchhhhhhH
Confidence 3445677899999999999999999875 23344788888889999999999999999998532 346788999999
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHH
Q 006705 408 MLGRAGRVGEALEFIKNMPFEPT----AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWED 483 (634)
Q Consensus 408 ~~~~~g~~~~A~~~~~~m~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 483 (634)
.+|..|++++|...|++.-..|+ ..+|..+..+..+.|+.+.|+..+++.++.+|+.+.+...+.....+.|++-.
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 99999999999999998732232 45788888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCC
Q 006705 484 VTRVRELMKEKAV 496 (634)
Q Consensus 484 A~~~~~~m~~~~~ 496 (634)
|...++....++.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999999877654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.6e-06 Score=85.74 Aligned_cols=68 Identities=12% Similarity=-0.006 Sum_probs=30.6
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhh-HHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 006705 134 YSQKAHSFEALNLFIRMLRSDTEPNEFT-FATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMY 204 (634)
Q Consensus 134 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 204 (634)
+...|++++|++.+..-.. ..+|..+ +......+.+.|+.++|..++..+++.+ +.+..-|..|..+.
T Consensus 14 l~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEAL 82 (517)
T ss_pred HHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 3445555555555544322 2233332 2333344455555555555555555554 33333344444433
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.71 E-value=2e-06 Score=83.38 Aligned_cols=155 Identities=12% Similarity=0.059 Sum_probs=102.5
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh----ccC
Q 006705 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS----HGG 376 (634)
Q Consensus 301 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~----~~g 376 (634)
...+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++. ...
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~---~eD-~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI---DED-SILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC---SCC-HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCc-HHHHHHHHHHHHHHhCch
Confidence 334566678888887777665 45566666777888888888888888888653 333 34444444432 234
Q ss_pred cHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCc-hHHHHH
Q 006705 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNV-DIGEFV 453 (634)
Q Consensus 377 ~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~-~~a~~~ 453 (634)
.+.+|..+|+++.. ...+++.+.+.+..+....|++++|.+++.+. .. +.|..+...++..+...|+. +.+.+.
T Consensus 182 ~~~~A~y~f~El~~---~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 182 KYQDAFYIFEELSD---KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp CCCHHHHHHHHHHC---CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hHHHHHHHHHHHHh---ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 67888888888765 44677778888888888888888888887774 22 23455666677766777776 556777
Q ss_pred HHHHhccCCCC
Q 006705 454 GQRLMEIEPEN 464 (634)
Q Consensus 454 ~~~~~~~~p~~ 464 (634)
..++....|+.
T Consensus 259 l~qL~~~~p~h 269 (290)
T PF04733_consen 259 LSQLKQSNPNH 269 (290)
T ss_dssp HHHCHHHTTTS
T ss_pred HHHHHHhCCCC
Confidence 88877777764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.3e-05 Score=82.42 Aligned_cols=193 Identities=14% Similarity=0.213 Sum_probs=120.9
Q ss_pred HHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHH
Q 006705 267 LTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVV 346 (634)
Q Consensus 267 l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 346 (634)
+.+......+.+|..+++.+..... -..-|.-+.+-|+..|+++.|+++|-+.. .++--|..|.++|++++|.
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHH
Confidence 4445556677777777776665532 22345566777888888888888876542 3455677788888888887
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 006705 347 ELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426 (634)
Q Consensus 347 ~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 426 (634)
++-.+.. |.......|.+-..-.-..|++.+|.+++-.+. .|+. -|.+|-+.|..++.+++..+-.
T Consensus 812 kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~------~p~~-----aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 812 KLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG------EPDK-----AIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc------CchH-----HHHHHHhhCcchHHHHHHHHhC
Confidence 7765442 333344455555555667777777777654332 3432 3677778888887777777652
Q ss_pred CCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHH
Q 006705 427 FEPT--AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVREL 490 (634)
Q Consensus 427 ~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 490 (634)
|+ ..|...+..-+...|+.+.|+.-+-+ ..-|..-+++|-..+.|++|.++-+.
T Consensus 878 --~d~l~dt~~~f~~e~e~~g~lkaae~~fle--------a~d~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 878 --GDHLHDTHKHFAKELEAEGDLKAAEEHFLE--------AGDFKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred --hhhhhHHHHHHHHHHHhccChhHHHHHHHh--------hhhHHHHHHHhhhhhhHHHHHHHHhc
Confidence 23 23444555666667777777655443 23455667777777777777776553
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.00018 Score=83.20 Aligned_cols=328 Identities=8% Similarity=-0.053 Sum_probs=174.6
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCC------CCc--hHHHHHHHHHHH
Q 006705 134 YSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF------ESH--IYVGSSLLDMYA 205 (634)
Q Consensus 134 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~------~~~--~~~~~~li~~y~ 205 (634)
....|++..+..+++.+.......+..........+...|+++++...+..+.+.-- .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 344566666666665542211111112222233344566778888777776654310 011 112223334556
Q ss_pred hcCCHHHHHHHHccCCC----CCh----hhHHHHHHHHHhcCChHHHHHHHHHHhhcCC---cc--ChhhHHHHHHHHhc
Q 006705 206 KAGRIHEARGVFECLPE----RDV----VSCTAIISGYAQLGLDEEAIELFRKLQVEGM---IS--NYVTYASVLTALSG 272 (634)
Q Consensus 206 ~~g~~~~A~~~~~~m~~----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~t~~~ll~~~~~ 272 (634)
..|++++|...+++... .+. ..++.+...+...|++++|...+.+.....- .+ ...++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 77888888777765322 221 2345555666778888888888777654211 11 11234444556667
Q ss_pred ccchHHHHHHHHHHHHc----CCCC---chhHHHHHHHHHHhcCCHHHHHHHHhhcCC------C--ChhhHHHHHHHHH
Q 006705 273 LAALGHGKQVHSHVLRF----EIPS---YVVLQNSLIDMYSKCGSLTYSRRVFDNMSE------R--TVISWNAMLVGYS 337 (634)
Q Consensus 273 ~~~~~~a~~i~~~~~~~----~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~m~~------~--~~~~~~~li~~~~ 337 (634)
.|+++.|...+...... +... ....+..+...+...|++++|...+.+... + ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 78888888777765542 2111 123344455566667888888777766532 1 1223444555667
Q ss_pred hcCChHHHHHHHHHHHHcC---CCCCCHHHH--HHHHHHHhccCcHHHHHHHHHHhhhccCCccCC---hHHHHHHHHHH
Q 006705 338 KHGMGREVVELFNLMREEN---KVKPDSVTY--LAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE---IEHYGCVVDML 409 (634)
Q Consensus 338 ~~g~~~~A~~~~~~m~~~~---g~~pd~~t~--~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~---~~~~~~li~~~ 409 (634)
..|++++|.+.+.+..... +..+..... ...+..+...|+.+.|...+...... ..... ...+..+..++
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP--EFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC--CCccchhHHHHHHHHHHHH
Confidence 7788888887777764420 110000000 01112334467777777776665432 11111 11134556667
Q ss_pred HHcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCC
Q 006705 410 GRAGRVGEALEFIKNM-------PFEPT-AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE 463 (634)
Q Consensus 410 ~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 463 (634)
...|+.++|...+.+. +..++ ..+...+..++...|+.++|...+.+++++...
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 7778888877777664 11111 123444456677777777777777777765543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.00046 Score=70.80 Aligned_cols=410 Identities=11% Similarity=0.014 Sum_probs=229.6
Q ss_pred ccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCCChhHHHHH
Q 006705 70 NQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE---RNVVSWTAMISAYSQKAHSFEALNL 146 (634)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 146 (634)
..|+.++|....+.-++.+ ..+.+.|..+.-.+-...++++|.+.|..... .|...|.-+--.-++.|+++.....
T Consensus 53 ~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~t 131 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLET 131 (700)
T ss_pred cccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHH
Confidence 4567778877776666643 33455666666666667788888888876543 3556676666666677777777777
Q ss_pred HHHHHHCCCCC-ChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCC-CCchHHHHHHH------HHHHhcCCHHHHHHHHc
Q 006705 147 FIRMLRSDTEP-NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF-ESHIYVGSSLL------DMYAKAGRIHEARGVFE 218 (634)
Q Consensus 147 ~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li------~~y~~~g~~~~A~~~~~ 218 (634)
-.+..+. .| ....|.....+.--.|+...|..+.+...+... .|+...+.-.. ....+.|..+.|.+.+.
T Consensus 132 r~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 132 RNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred HHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 6666653 33 345666677777777888888888888877652 45544443322 23346677788877776
Q ss_pred cCCCC--Ch-hhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHh-cccchHHHH-HHHHHHHHcC---
Q 006705 219 CLPER--DV-VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS-GLAALGHGK-QVHSHVLRFE--- 290 (634)
Q Consensus 219 ~m~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~~~~~~a~-~i~~~~~~~~--- 290 (634)
..... |- ..-.+....+.+.++.++|..++..+... .||..-|...+..+. +..+..++. .++....+.-
T Consensus 210 ~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~ 287 (700)
T KOG1156|consen 210 DNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH 287 (700)
T ss_pred hhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc
Confidence 55432 22 22334556677888888999888888875 577776666555544 233322222 4444433321
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHH----cC-------C-
Q 006705 291 IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT-VISWNAMLVGYSKHGMGREVVELFNLMRE----EN-------K- 357 (634)
Q Consensus 291 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~-------g- 357 (634)
..|-....+.+. -..-.+...+++..+.++. +..+..+.+.|-.-...+-..++...+.. .+ |
T Consensus 288 e~p~Rlplsvl~----~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~ 363 (700)
T KOG1156|consen 288 ECPRRLPLSVLN----GEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGK 363 (700)
T ss_pred ccchhccHHHhC----cchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccc
Confidence 111111111100 0011111222222222221 22333333333322222111111111111 10 0
Q ss_pred -CCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCC-hHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCCH
Q 006705 358 -VKPDSV--TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE-IEHYGCVVDMLGRAGRVGEALEFIKNMP--FEPTA 431 (634)
Q Consensus 358 -~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~ 431 (634)
-+|... |+..+...+-..|+++.|..+.+.... -.|+ ++.|..=..++...|.+++|..++++.. ..||.
T Consensus 364 ~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId----HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR 439 (700)
T KOG1156|consen 364 QEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID----HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADR 439 (700)
T ss_pred cCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc----cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhH
Confidence 134443 344456667788888888888888873 3555 4556666677888888888888888762 13454
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCc-------hH--HHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 432 AILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAG-------NY--VILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 432 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~--~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
..-.--..-..+..+.++|..+.....+.+-+-.. .| .-=+.+|.+.|++.+|.+-|..+.
T Consensus 440 ~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 440 AINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 43333334445667788888777766654432111 11 123556888888888877666553
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.4e-06 Score=72.74 Aligned_cols=199 Identities=13% Similarity=0.020 Sum_probs=93.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 006705 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSK 307 (634)
Q Consensus 228 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~ 307 (634)
...|.-+|.+.|+...|..-+++.++.. +-+..++..+...|.+.|..+.|.+-|+..++.. +.+..+.|...
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG----- 110 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYG----- 110 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhh-----
Confidence 3445556666666666666666665542 2222344444444455555555555555444443 23333444444
Q ss_pred cCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHH
Q 006705 308 CGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP-DSVTYLAVLSGCSHGGMEDRGLAVFH 386 (634)
Q Consensus 308 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~ 386 (634)
.-+|..|++++|...|++.... ..-| -..||..+.-+..+.|+.+.|..+|+
T Consensus 111 --------------------------~FLC~qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ 163 (250)
T COG3063 111 --------------------------AFLCAQGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLK 163 (250)
T ss_pred --------------------------HHHHhCCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHH
Confidence 4444455555555555554443 1111 12344444444445555555555555
Q ss_pred HhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCC
Q 006705 387 EIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE 463 (634)
Q Consensus 387 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 463 (634)
...+.. +-.....-.+.+...+.|++-.|..+++.. ...++..+.-..|..-...||.+.+-+.-.++.+..|.
T Consensus 164 raL~~d---p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 164 RALELD---PQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPY 239 (250)
T ss_pred HHHHhC---cCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 554321 112333444445555555555555555443 11233333333344444555555555555555555554
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.6e-05 Score=79.22 Aligned_cols=225 Identities=15% Similarity=0.126 Sum_probs=116.1
Q ss_pred HHHHHHHcCCChHHHHHHHhhcC--CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCc
Q 006705 98 RLIVFYNKCECLSDARKMFDEMR--ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGF 175 (634)
Q Consensus 98 ~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 175 (634)
+-|..|.+.|....|.+....-. ..|.....-+..++.+..-+++|=++|+.+.. +.-.+..+-+-.-+
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgdaf 690 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAF 690 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHH
Confidence 45666777777666665543211 23444444445555555555555555555532 11122222222223
Q ss_pred HHHHHHHHHHHHhCCCCchHHH-HHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 006705 176 ELGKQIHSLIIKSNFESHIYVG-SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE 254 (634)
Q Consensus 176 ~~a~~~~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 254 (634)
.+|.++-..+ ++..++.. ..-..-+...|+++.|..-|-+.. ..-..|.+-....+|.+|+.+++.++..
T Consensus 691 ~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdq 761 (1636)
T KOG3616|consen 691 GKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQ 761 (1636)
T ss_pred HHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhh
Confidence 3333322211 22221111 111222334455565555553221 1112334455566777777777777665
Q ss_pred CCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC--ChhhHHHH
Q 006705 255 GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER--TVISWNAM 332 (634)
Q Consensus 255 g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~--~~~~~~~l 332 (634)
.. -.--|..+...|++.|+++.|+++|.+. ..++--|+||.+.|++++|.++-.+...| .+.+|-+-
T Consensus 762 k~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiak 830 (1636)
T KOG3616|consen 762 KT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAK 830 (1636)
T ss_pred cc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHh
Confidence 32 2334566677777777777777776532 23455677777777777777777666554 34455555
Q ss_pred HHHHHhcCChHHHHHHHHH
Q 006705 333 LVGYSKHGMGREVVELFNL 351 (634)
Q Consensus 333 i~~~~~~g~~~~A~~~~~~ 351 (634)
..-+-.+|++.+|.++|-.
T Consensus 831 aedldehgkf~eaeqlyit 849 (1636)
T KOG3616|consen 831 AEDLDEHGKFAEAEQLYIT 849 (1636)
T ss_pred HHhHHhhcchhhhhheeEE
Confidence 5556667777666666543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.5e-05 Score=74.37 Aligned_cols=262 Identities=12% Similarity=-0.031 Sum_probs=154.3
Q ss_pred CCCChhHHHHHHHHHHcCCChHHHHHHHhhcCCCCcchHHHH---HHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHH
Q 006705 89 YRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAM---ISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165 (634)
Q Consensus 89 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 165 (634)
++.|+....++...|...|+.++|...|++...-|+.+..+| .-.+.+.|+++....+...+.... +-....|..-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 566777778888888888888888888887665443332222 223456777777777766665431 1222233333
Q ss_pred HHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCC--C-CChhhHHHHHHHHHhcCChH
Q 006705 166 LTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP--E-RDVVSCTAIISGYAQLGLDE 242 (634)
Q Consensus 166 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~-~~~~~~~~li~~~~~~g~~~ 242 (634)
+...-..++++.|..+-+..++.. +.+...+-.-.+.+...|+.++|.-.|+... . -+..+|.-|+..|...|.+.
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence 333445566777777766666543 2233333333355666788888887777543 2 36678888888888888888
Q ss_pred HHHHHHHHHhhcCCccChhhHHHHH-HHHh-cccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 006705 243 EAIELFRKLQVEGMISNYVTYASVL-TALS-GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDN 320 (634)
Q Consensus 243 ~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~-~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 320 (634)
+|.-+-+..... ++-+..+++.+- ..|. ....-++|+.+++..++.. |.-...-+.+...+...|..+++..++++
T Consensus 386 EA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 386 EANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 887665554432 233344443331 2221 2233456666666665543 22234445556666666666666666665
Q ss_pred cC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006705 321 MS--ERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354 (634)
Q Consensus 321 m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (634)
-. .+|....+.+.+.+...+.+.+|++.|.....
T Consensus 464 ~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 464 HLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44 35666666666666666666666666666554
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.7e-05 Score=73.06 Aligned_cols=417 Identities=11% Similarity=0.059 Sum_probs=232.1
Q ss_pred CCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC--CCcchHHH-
Q 006705 53 GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE--RNVVSWTA- 129 (634)
Q Consensus 53 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~- 129 (634)
|+......+.+++....+..++..|.+++..-.+.. +.+..-.+.|...|-...++..|-..++++.. |...-|..
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY 83 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY 83 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence 333344456677777777778888888887776653 22455556667778888888888888888765 43333332
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHH--hccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Q 006705 130 MISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSC--AGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA 207 (634)
Q Consensus 130 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 207 (634)
-...+-+++.+.+|+++...|... |+...-..-+.+. -..+|+..++.+.++... +.+..+.+.......+.
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~---en~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS---ENEADGQINLGCLLYKE 157 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC---CCccchhccchheeecc
Confidence 234556778888999988887542 2222222222222 245777777777766542 23445555555666788
Q ss_pred CCHHHHHHHHccCCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhh-HHHHHHHHhcccchHHHHHH
Q 006705 208 GRIHEARGVFECLPE----RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVT-YASVLTALSGLAALGHGKQV 282 (634)
Q Consensus 208 g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~i 282 (634)
|+.+.|.+-|+...+ ...++||..+. ..+.|+++.|++...++.+.|++--+.. ......+ .....+..-..+
T Consensus 158 gqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~teg-iDvrsvgNt~~l 235 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEG-IDVRSVGNTLVL 235 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceecc-CchhcccchHHH
Confidence 899999888887654 34567776555 4467888889988888888776422110 0000000 000000011111
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 006705 283 HSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER-----TVISWNAMLVGYSKHGMGREVVELFNLMREENK 357 (634)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g 357 (634)
+...+ +..+|.-...+.+.|+.+.|.+.+-.|+.+ |++|...+.-.- ..+++.+..+-++-+... .
T Consensus 236 h~Sal-------~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~-n 306 (459)
T KOG4340|consen 236 HQSAL-------VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ-N 306 (459)
T ss_pred HHHHH-------HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc-C
Confidence 11111 122333344567889999999999999854 667665543221 234455555555555543 1
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCc-cCChHHHHHHHHHHHH-cCCHHHHHHHHHhCCCCCCHHHHH
Q 006705 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF-EPEIEHYGCVVDMLGR-AGRVGEALEFIKNMPFEPTAAILG 435 (634)
Q Consensus 358 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~p~~~~~~ 435 (634)
. -...||..++-.|++..-++.|-.++.+-... .+ -.+...|+ |++++.- .-..++|.+-+..+...-....-.
T Consensus 307 P-fP~ETFANlLllyCKNeyf~lAADvLAEn~~l--Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRk 382 (459)
T KOG4340|consen 307 P-FPPETFANLLLLYCKNEYFDLAADVLAENAHL--TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRK 382 (459)
T ss_pred C-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcch--hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2 23478999999999999999988887653321 11 11233333 3344433 345666665554431000000000
Q ss_pred HHHHH-HHhcCCchHH----HHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 436 SLLGA-CRVHYNVDIG----EFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 436 ~ll~~-~~~~~~~~~a----~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
.-+.. -.++.+-+++ ..-+++.+++- ......-...|++..++.-+.++|..-.+-
T Consensus 383 lAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 383 LAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 00000 0112222222 11222222221 123445667788888999999999877553
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.62 E-value=6e-05 Score=76.83 Aligned_cols=196 Identities=11% Similarity=-0.021 Sum_probs=95.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH--HHHHHHHHHHh
Q 006705 299 NSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS--VTYLAVLSGCS 373 (634)
Q Consensus 299 ~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~--~t~~~ll~a~~ 373 (634)
..+...+...|++++|...+++..+ .+...+..+...|...|++++|..++++........|+. ..+..+...+.
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 3444455666666666666665542 234455556666666666666666666655431111222 12334555566
Q ss_pred ccCcHHHHHHHHHHhhhccCCccCChHHH-H--HHHHHHHHcCCHHHHHHH------HHhC-CCCCCHHHHHHHHHHHHh
Q 006705 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHY-G--CVVDMLGRAGRVGEALEF------IKNM-PFEPTAAILGSLLGACRV 443 (634)
Q Consensus 374 ~~g~~~~a~~~~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~------~~~m-~~~p~~~~~~~ll~~~~~ 443 (634)
..|++++|..+++...... ...+..... + .+..-+...|..+.+.+. .... +.............++..
T Consensus 198 ~~G~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPS-AESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAG 276 (355)
T ss_pred HCCCHHHHHHHHHHHhccc-cCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhc
Confidence 6666666666666654221 101111111 1 112222223322222211 1111 100011111234455566
Q ss_pred cCCchHHHHHHHHHhccCC---------CCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCC
Q 006705 444 HYNVDIGEFVGQRLMEIEP---------ENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495 (634)
Q Consensus 444 ~~~~~~a~~~~~~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 495 (634)
.|+.+.|...++.+....- ...........++...|++++|.+.+......+
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 6666666666655543111 123344566777889999999999999886543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.5e-06 Score=87.27 Aligned_cols=218 Identities=9% Similarity=0.041 Sum_probs=171.8
Q ss_pred hcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHH
Q 006705 271 SGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVE 347 (634)
Q Consensus 271 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 347 (634)
.+.|++.+|.-.|+..++.+ |.+...|--|.......++-..|+..+.+..+ .|....-+|.-.|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 56778888888888888776 66788888888888888888888888887764 366777788888999999999999
Q ss_pred HHHHHHHcCCCC--------CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHH
Q 006705 348 LFNLMREENKVK--------PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419 (634)
Q Consensus 348 ~~~~m~~~~g~~--------pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 419 (634)
+++.-... ..+ ++..+-.. ..+.....+....++|-++.... +..+|+++...|.-.|--.|.+++|.
T Consensus 375 ~L~~Wi~~-~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~-~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 375 MLDKWIRN-KPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQL-PTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHh-CccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhC-CCCCChhHHhhhHHHHhcchHHHHHH
Confidence 99887654 110 01100000 12233334455566666666544 55689999999999999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 420 EFIKNM-PFEP-TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 420 ~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
+.|+.. ..+| |...||-|....+...+.++|...+.+++++.|.-+.+...|+-.|...|.++||.+.|-....
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999986 4555 5778999999999999999999999999999999999999999999999999999999887654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.3e-05 Score=72.20 Aligned_cols=375 Identities=13% Similarity=0.077 Sum_probs=232.5
Q ss_pred HHHHHcCCChHHHHHHHhhcCC------CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccC
Q 006705 100 IVFYNKCECLSDARKMFDEMRE------RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAF 173 (634)
Q Consensus 100 i~~y~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 173 (634)
+.-+....++.-|+.+++--.. .++..| +...+.+.|++++|+..+..+.+.. .|+...+..+.-...-.|
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHH
Confidence 3444456788999988875432 122333 3456778899999999999887754 455555655665666678
Q ss_pred CcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 006705 174 GFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253 (634)
Q Consensus 174 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 253 (634)
.+.+|+++-... +.++.-...|...-.|.|+-++-..+-+.+.+.. .---+|.+..-..-.+++|+++|.+...
T Consensus 106 ~Y~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 106 QYIEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888776543 3333344455566667777666665555544321 1122344444445578999999999987
Q ss_pred cCCccChhhHHHHHH-HHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh--cCCHHHH--HHHHhhcCC-----
Q 006705 254 EGMISNYVTYASVLT-ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSK--CGSLTYS--RRVFDNMSE----- 323 (634)
Q Consensus 254 ~g~~p~~~t~~~ll~-~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A--~~~f~~m~~----- 323 (634)
. .|+-...+.-+. +|.+..-++.+.+++...++. ++.++...|.......+ .|+..++ .++-+...+
T Consensus 180 d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~ 256 (557)
T KOG3785|consen 180 D--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFI 256 (557)
T ss_pred c--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhH
Confidence 5 466666655444 456777788888888877665 34444555544443333 2332222 112221110
Q ss_pred -----CC---------------------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH-----
Q 006705 324 -----RT---------------------VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC----- 372 (634)
Q Consensus 324 -----~~---------------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~----- 372 (634)
.| +..--.++--|.+.++..+|..+.+++. ...|-....-.+..+-
T Consensus 257 ~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~---PttP~EyilKgvv~aalGQe~ 333 (557)
T KOG3785|consen 257 EYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD---PTTPYEYILKGVVFAALGQET 333 (557)
T ss_pred HHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC---CCChHHHHHHHHHHHHhhhhc
Confidence 01 1222334555788899999998877653 3455555444444332
Q ss_pred hccCcHHHHHHHHHHhhhccCCccCC-hHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCchH
Q 006705 373 SHGGMEDRGLAVFHEIVDCKDGFEPE-IEHYGCVVDMLGRAGRVGEALEFIKNMP--FEPTAAILGSLLGACRVHYNVDI 449 (634)
Q Consensus 373 ~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~ 449 (634)
.....+.-|.+.|+..-+. +.+-| ..--.++...+.-..++++.+-.++... +..|...--.+..+....|++.+
T Consensus 334 gSreHlKiAqqffqlVG~S--a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~e 411 (557)
T KOG3785|consen 334 GSREHLKIAQQFFQLVGES--ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVE 411 (557)
T ss_pred CcHHHHHHHHHHHHHhccc--ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHH
Confidence 2223356677777766543 44333 3334556666666778888888777662 22343444457789999999999
Q ss_pred HHHHHHHHhccCCCCCchHH-HHHHHHhhcCCcHHHHHHHHHH
Q 006705 450 GEFVGQRLMEIEPENAGNYV-ILSNLYASAGRWEDVTRVRELM 491 (634)
Q Consensus 450 a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m 491 (634)
|++++-++...+..|..+|. .|..+|.+.|+.+.|..++-++
T Consensus 412 aEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 412 AEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 99999888877766666665 5778899999999998877665
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00016 Score=73.76 Aligned_cols=151 Identities=11% Similarity=-0.012 Sum_probs=75.6
Q ss_pred hccCCcHHHHHHHHHHHHhCCCCchHHHH---HHHHHHHhcCCHHHHHHHHccCCCCC---hhhHHHHHHHHHhcCChHH
Q 006705 170 AGAFGFELGKQIHSLIIKSNFESHIYVGS---SLLDMYAKAGRIHEARGVFECLPERD---VVSCTAIISGYAQLGLDEE 243 (634)
Q Consensus 170 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~---~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~ 243 (634)
...|+++.+..+++.+.+.. +.+...++ .+.......|..+.+.+.++.....+ ...+..+...+...|++++
T Consensus 54 ~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~ 132 (355)
T cd05804 54 WIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDR 132 (355)
T ss_pred HHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHH
Confidence 34455556655555555442 22332322 11111122344444444444322211 1223334445666667777
Q ss_pred HHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCC-CCch--hHHHHHHHHHHhcCCHHHHHHHHhh
Q 006705 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI-PSYV--VLQNSLIDMYSKCGSLTYSRRVFDN 320 (634)
Q Consensus 244 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~-~~~~--~~~~~li~~~~~~g~~~~A~~~f~~ 320 (634)
|...+++..+.. +.+...+..+...+...|++++|...+....+... .++. ..+..+...+...|++++|..+|++
T Consensus 133 A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 133 AEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred HHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777776666542 22334445555556666666666666666555421 1121 2334566667777777777777776
Q ss_pred cC
Q 006705 321 MS 322 (634)
Q Consensus 321 m~ 322 (634)
..
T Consensus 212 ~~ 213 (355)
T cd05804 212 HI 213 (355)
T ss_pred Hh
Confidence 54
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.8e-08 Score=59.09 Aligned_cols=33 Identities=39% Similarity=0.727 Sum_probs=26.8
Q ss_pred CccCChHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 006705 394 GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426 (634)
Q Consensus 394 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 426 (634)
|+.||..+|++||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 778888888888888888888888888888773
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.3e-06 Score=82.96 Aligned_cols=215 Identities=10% Similarity=0.019 Sum_probs=138.1
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC-CC---ChhhHHH-HHHHHH
Q 006705 263 YASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ER---TVISWNA-MLVGYS 337 (634)
Q Consensus 263 ~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~-~~---~~~~~~~-li~~~~ 337 (634)
..-+.+++...|..+.+ ...+.+.. .|.......+...+...++-+.+..-++... ++ +-.++.. ....+.
T Consensus 38 ~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~ 113 (290)
T PF04733_consen 38 DFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILF 113 (290)
T ss_dssp HHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 34445555555554432 22222222 3444443333333332244555555554433 22 1112222 223466
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHH----HcC
Q 006705 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLG----RAG 413 (634)
Q Consensus 338 ~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g 413 (634)
..|++++|++++++- .+.......+..+.+.++++.|.+.++.|.+ +..| .+...|..++. -..
T Consensus 114 ~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~----~~eD-~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKNMQQ----IDED-SILTQLAEAWVNLATGGE 181 (290)
T ss_dssp CCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC----CSCC-HHHHHHHHHHHHHHHTTT
T ss_pred HcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCc-HHHHHHHHHHHHHHhCch
Confidence 689999999988642 3455666778889999999999999999984 3344 33333444333 334
Q ss_pred CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCc-HHHHHHHHH
Q 006705 414 RVGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW-EDVTRVREL 490 (634)
Q Consensus 414 ~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 490 (634)
.+.+|..+|+++ ...+++.+.+.+..+....|++++|+.+++++++.+|.++.+...++-+....|+. +.+.+.+..
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 799999999998 44578888899999999999999999999999999999999999999999999988 667788888
Q ss_pred Hhh
Q 006705 491 MKE 493 (634)
Q Consensus 491 m~~ 493 (634)
++.
T Consensus 262 L~~ 264 (290)
T PF04733_consen 262 LKQ 264 (290)
T ss_dssp CHH
T ss_pred HHH
Confidence 765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.56 E-value=9.5e-08 Score=58.94 Aligned_cols=33 Identities=33% Similarity=0.544 Sum_probs=26.5
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHccCC
Q 006705 189 NFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221 (634)
Q Consensus 189 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 221 (634)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888888774
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00095 Score=71.67 Aligned_cols=343 Identities=13% Similarity=0.117 Sum_probs=204.2
Q ss_pred CCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCC--CChhHHHHHHHHHHcCCChHHHHHHHhhcC-CCCcch-----H
Q 006705 56 MRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYR--PPVYLRTRLIVFYNKCECLSDARKMFDEMR-ERNVVS-----W 127 (634)
Q Consensus 56 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~~-----~ 127 (634)
.|...|..++.- .-..-+++.+++++.+++ .|+.-.+..+.++...+-..+-.++++++. ++++.+ -
T Consensus 950 ~D~~LW~~VL~e-----~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQ 1024 (1666)
T KOG0985|consen 950 SDPDLWAKVLNE-----ENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQ 1024 (1666)
T ss_pred cChHHHHHHHhc-----cChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhh
Confidence 355556665531 123346777888877753 355566677888888888888889988875 344433 3
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Q 006705 128 TAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA 207 (634)
Q Consensus 128 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 207 (634)
|.||-...+. +.....+..+++-.-. .|+ +...+...+-+++|..+|... ..+....+.||. .-
T Consensus 1025 nLLiLtAika-d~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i 1088 (1666)
T KOG0985|consen 1025 NLLILTAIKA-DRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NI 1088 (1666)
T ss_pred hhHHHHHhhc-ChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---Hh
Confidence 3444443433 4445666666654322 122 233344555567777776553 334444444544 24
Q ss_pred CCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHH
Q 006705 208 GRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287 (634)
Q Consensus 208 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~ 287 (634)
+.++.|.+.-++..+| ..|+.+..+-.+.|...+|++-|-+. -|...|..++..+.+.|.+++-...+..+.
T Consensus 1089 ~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 6677777777666554 45778888888888888887766433 255678888888888888888887777777
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----------------------CChhhHHHHHHHHHhcCChHH
Q 006705 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE-----------------------RTVISWNAMLVGYSKHGMGRE 344 (634)
Q Consensus 288 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----------------------~~~~~~~~li~~~~~~g~~~~ 344 (634)
+..-.|.+ -+.||-+|++.+++.+-++++..-.. .++.-|..+...+...|++..
T Consensus 1161 kk~~E~~i--d~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~ 1238 (1666)
T KOG0985|consen 1161 KKVREPYI--DSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQG 1238 (1666)
T ss_pred HhhcCccc--hHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 66555443 35677788888887776655431110 134455556666666666666
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q 006705 345 VVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKN 424 (634)
Q Consensus 345 A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 424 (634)
|...-++. .+..||--+-.||...+.+..| +|-.. .+-...+-..-|+..|-..|.++|-+.+++.
T Consensus 1239 AVD~aRKA-------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL--~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1239 AVDAARKA-------NSTKTWKEVCFACVDKEEFRLA-----QICGL--NIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred HHHHhhhc-------cchhHHHHHHHHHhchhhhhHH-----HhcCc--eEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 65544332 2446677777777766555433 22211 2333455566677777778888887777776
Q ss_pred C-CCC-CCHHHHHHHHHHHHh
Q 006705 425 M-PFE-PTAAILGSLLGACRV 443 (634)
Q Consensus 425 m-~~~-p~~~~~~~ll~~~~~ 443 (634)
. +.+ .....|+-|.-.|.+
T Consensus 1305 ~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1305 GLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred hhchhHHHHHHHHHHHHHHHh
Confidence 4 322 233344444444443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00036 Score=73.15 Aligned_cols=378 Identities=11% Similarity=0.074 Sum_probs=185.8
Q ss_pred CHhhHHHHHHH--HhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC-----------CC
Q 006705 57 RFEEYDTLLNA--CVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE-----------RN 123 (634)
Q Consensus 57 ~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----------~~ 123 (634)
|..|-..++.. |...|+.+.|.+-...+. +..+|..+..|+.+..+++-|.-.+-.|.. .|
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 55555555543 455666666666555443 245677777777777777666666655543 01
Q ss_pred c-chHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 006705 124 V-VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLD 202 (634)
Q Consensus 124 ~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 202 (634)
. ..-.-......+.|..++|+.+|++-+. |..+=+.|-..|.+++|.++-+.=-+..+. .+|-.-..
T Consensus 799 ~~e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~ 866 (1416)
T KOG3617|consen 799 GEEDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAK 866 (1416)
T ss_pred CcchhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHH
Confidence 1 1111111222345666666666666554 222333444556666666554332221111 12222223
Q ss_pred HHHhcCCHHHHHHHHccCCC-----------------------CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccC
Q 006705 203 MYAKAGRIHEARGVFECLPE-----------------------RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISN 259 (634)
Q Consensus 203 ~y~~~g~~~~A~~~~~~m~~-----------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 259 (634)
-+-..++.+.|++.|++... +|...|.-...-.-..|+.+.|+.+|...+.
T Consensus 867 ~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------ 940 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------ 940 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh------
Confidence 33334555666555554321 1222232233333345666777776665543
Q ss_pred hhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhc
Q 006705 260 YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKH 339 (634)
Q Consensus 260 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~ 339 (634)
|-++....+-.|+.++|-+|-++ ..|....-.|..+|-..|++.+|...|.+.. ++..-|..+-.+
T Consensus 941 ---~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq-----afsnAIRlcKEn 1006 (1416)
T KOG3617|consen 941 ---YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ-----AFSNAIRLCKEN 1006 (1416)
T ss_pred ---hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHhc
Confidence 34455555667777777766554 2355566678888888899988888887764 222222222222
Q ss_pred C---------------ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHH---------HHHhhhccCCc
Q 006705 340 G---------------MGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAV---------FHEIVDCKDGF 395 (634)
Q Consensus 340 g---------------~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~---------~~~~~~~~~~~ 395 (634)
+ +.-.|-.+|++. |... ...+..|-++|.+.+|+++ ++-+.+.. .-
T Consensus 1007 d~~d~L~nlal~s~~~d~v~aArYyEe~----g~~~-----~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DL-d~ 1076 (1416)
T KOG3617|consen 1007 DMKDRLANLALMSGGSDLVSAARYYEEL----GGYA-----HKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDL-DA 1076 (1416)
T ss_pred CHHHHHHHHHhhcCchhHHHHHHHHHHc----chhh-----hHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhc-CC
Confidence 1 222233333332 2111 1122335566666655543 22222211 11
Q ss_pred cCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhc---cCCCC---CchHH
Q 006705 396 EPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLME---IEPEN---AGNYV 469 (634)
Q Consensus 396 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~p~~---~~~~~ 469 (634)
..|+...+.-.+.+....++++|..++-... -+..-+..|. ..+...-+++.+.+.- -.|+. .....
T Consensus 1077 ~sDp~ll~RcadFF~~~~qyekAV~lL~~ar------~~~~AlqlC~-~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLe 1149 (1416)
T KOG3617|consen 1077 GSDPKLLRRCADFFENNQQYEKAVNLLCLAR------EFSGALQLCK-NRNVRVTEEFAELMTPTKDDMPNEQERKQVLE 1149 (1416)
T ss_pred CCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH------HHHHHHHHHh-cCCCchhHHHHHhcCcCcCCCccHHHHHHHHH
Confidence 2355556666666666666666666654431 1222223232 2333333333333321 11211 12445
Q ss_pred HHHHHHhhcCCcHHHHHHHH
Q 006705 470 ILSNLYASAGRWEDVTRVRE 489 (634)
Q Consensus 470 ~l~~~~~~~g~~~~A~~~~~ 489 (634)
.+++.|.++|.+..|.+-|.
T Consensus 1150 qvae~c~qQG~Yh~AtKKfT 1169 (1416)
T KOG3617|consen 1150 QVAELCLQQGAYHAATKKFT 1169 (1416)
T ss_pred HHHHHHHhccchHHHHHHHh
Confidence 67777778887777665543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.4e-05 Score=74.84 Aligned_cols=215 Identities=11% Similarity=0.057 Sum_probs=123.6
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh----------hhHHHHH
Q 006705 264 ASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTV----------ISWNAML 333 (634)
Q Consensus 264 ~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~----------~~~~~li 333 (634)
..+.++.-+..+++.+.+-+...+... .+..-++....+|...|........-+...+..- .+...+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 334555556666777777777776665 5566667777777777776666555444333211 1222234
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChH-HHHHHHHHHHHc
Q 006705 334 VGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIE-HYGCVVDMLGRA 412 (634)
Q Consensus 334 ~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~ 412 (634)
.+|.+.++++.|+..|++.... -..||..+ +....+++........ -+.|... -...=...+.+.
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte-~Rt~~~ls---------~lk~~Ek~~k~~e~~a----~~~pe~A~e~r~kGne~Fk~ 371 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTE-HRTPDLLS---------KLKEAEKALKEAERKA----YINPEKAEEEREKGNEAFKK 371 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhh-hcCHHHHH---------HHHHHHHHHHHHHHHH----hhChhHHHHHHHHHHHHHhc
Confidence 4566677788888888777665 34444322 1122233333222222 1222211 111114455667
Q ss_pred CCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHH
Q 006705 413 GRVGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVREL 490 (634)
Q Consensus 413 g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 490 (634)
|++..|+..+.++ ..+.|...|..-..+|.+.+.+..|..-.+..++++|+....|..=+.++.-..+|++|.+.|.+
T Consensus 372 gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777765 22334556666666667777777777777777777777666666666666666677777777766
Q ss_pred HhhC
Q 006705 491 MKEK 494 (634)
Q Consensus 491 m~~~ 494 (634)
-.+.
T Consensus 452 ale~ 455 (539)
T KOG0548|consen 452 ALEL 455 (539)
T ss_pred HHhc
Confidence 6544
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00092 Score=71.79 Aligned_cols=318 Identities=10% Similarity=0.061 Sum_probs=193.3
Q ss_pred CHhhHHHHHHHHhccCCchHHHHHHHHHHHhC--CCCChhHHHHHHHHHHcCCChHHHHHHHhhcCCCCcchHHHHHHHH
Q 006705 57 RFEEYDTLLNACVNQRTLRGGQRVHAHMIKTC--YRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAY 134 (634)
Q Consensus 57 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 134 (634)
|+...+..++++...+-..+-.++++.++-.+ +..+....|-||-.-.|. +.....+..+++..-|. -.+....
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa---~~ia~ia 1058 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDA---PDIAEIA 1058 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCc---hhHHHHH
Confidence 55556677788877777777777877776432 222333445555444443 33444444444433222 1234455
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHH
Q 006705 135 SQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214 (634)
Q Consensus 135 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 214 (634)
..++-+++|+.+|+..- .+......++. ..++++.|.+.-+.. ..+.+|+.|..+-.+.|.+.+|.
T Consensus 1059 i~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAi 1124 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAI 1124 (1666)
T ss_pred hhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHH
Confidence 66777889999988752 24445555554 234555555544332 24557777888888888888888
Q ss_pred HHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCc
Q 006705 215 GVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY 294 (634)
Q Consensus 215 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~ 294 (634)
+-|=+ ..|+..|..+|....+.|.+++-.+.+...++..-.|... +.++-+|++.+++.+-+++.. .||
T Consensus 1125 eSyik--adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN 1193 (1666)
T KOG0985|consen 1125 ESYIK--ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPN 1193 (1666)
T ss_pred HHHHh--cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCC
Confidence 77733 4466777888888888888888887776666655555443 356677777777666555442 233
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcC------------------------CCChhhHHHHHHHHHhcCChHHHHHHHH
Q 006705 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMS------------------------ERTVISWNAMLVGYSKHGMGREVVELFN 350 (634)
Q Consensus 295 ~~~~~~li~~~~~~g~~~~A~~~f~~m~------------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~ 350 (634)
..-...+.+-+...|.++.|.-+|..+. ..+..+|.-.-.+|...+.+.-|
T Consensus 1194 ~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA----- 1268 (1666)
T KOG0985|consen 1194 VANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA----- 1268 (1666)
T ss_pred chhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH-----
Confidence 3333334444444444444443333322 13567888888888776665433
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccC-ChHHHHHHHHHHHHcC
Q 006705 351 LMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP-EIEHYGCVVDMLGRAG 413 (634)
Q Consensus 351 ~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g 413 (634)
+|.-. .+-....-.-.++.-|...|-+++-..+++... |++. ....|+-|.-.|+|-.
T Consensus 1269 QiCGL-~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L----GLERAHMgmfTELaiLYskyk 1327 (1666)
T KOG0985|consen 1269 QICGL-NIIVHADELEELIEYYQDRGYFEELISLLEAGL----GLERAHMGMFTELAILYSKYK 1327 (1666)
T ss_pred HhcCc-eEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh----chhHHHHHHHHHHHHHHHhcC
Confidence 33322 233344557788999999999999999998876 5543 4567888888887653
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00013 Score=77.97 Aligned_cols=172 Identities=11% Similarity=0.013 Sum_probs=114.8
Q ss_pred HHHHHHhhcC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhh
Q 006705 313 YSRRVFDNMS---ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389 (634)
Q Consensus 313 ~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 389 (634)
.|...+.+.. ..+...||+|.-. ...|.+.-|...|-+-... .+....+|..+--.|....+++.|...|....
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s--ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS--EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc--cccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 4455555433 3466777766554 5556676676666655543 34455777777777888889999999998887
Q ss_pred hccCCccC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCchH----------HH
Q 006705 390 DCKDGFEP-EIEHYGCVVDMLGRAGRVGEALEFIKNM-------PFEPTAAILGSLLGACRVHYNVDI----------GE 451 (634)
Q Consensus 390 ~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~~~~~~----------a~ 451 (634)
.+.| +...|--........|+.-++..+|..- +.-|+...|-.-..-...+|+.+. |-
T Consensus 878 ----SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs 953 (1238)
T KOG1127|consen 878 ----SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSAS 953 (1238)
T ss_pred ----hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhH
Confidence 4455 4455544444445678888888888752 223566666665555666666554 33
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHH
Q 006705 452 FVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELM 491 (634)
Q Consensus 452 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 491 (634)
-..++.+...|+...+|.+.+...-..+.+.+|.+...+.
T Consensus 954 ~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 954 LALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4456667788998899999888888888888877766654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.6e-05 Score=75.80 Aligned_cols=181 Identities=12% Similarity=0.016 Sum_probs=106.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC-h---hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH-HHHHH
Q 006705 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSE--RT-V---ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS-VTYLA 367 (634)
Q Consensus 295 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~-~t~~~ 367 (634)
...+..+...|.+.|++++|...|+++.. |+ . .+|..+...|.+.|++++|+..++++.+...-.|.. .++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 44455556666666777777776665543 21 1 345556666666777777777777666541111111 12333
Q ss_pred HHHHHhcc--------CcHHHHHHHHHHhhhccCCccCCh-HHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 006705 368 VLSGCSHG--------GMEDRGLAVFHEIVDCKDGFEPEI-EHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLL 438 (634)
Q Consensus 368 ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll 438 (634)
+..++... |+.++|.+.++.+.+. .|+. ..+..+.... ...... ......+.
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~a~~~~~----~~~~~~-----------~~~~~~~a 173 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR----YPNSEYAPDAKKRMD----YLRNRL-----------AGKELYVA 173 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH----CCCChhHHHHHHHHH----HHHHHH-----------HHHHHHHH
Confidence 33344433 5566666666666643 2222 1221111110 000000 00112345
Q ss_pred HHHHhcCCchHHHHHHHHHhccCCCC---CchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 439 GACRVHYNVDIGEFVGQRLMEIEPEN---AGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 439 ~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
..+...|+++.|...++++.+..|++ +..+..++.+|.+.|++++|.+.++.+..+
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66788899999999999999887764 367889999999999999999999988654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00085 Score=63.52 Aligned_cols=304 Identities=13% Similarity=0.118 Sum_probs=156.9
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHH---HHHHhccCCcHHHHHHHHHHHHhCCCCchHH-HHHHHHHHHh
Q 006705 131 ISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV---LTSCAGAFGFELGKQIHSLIIKSNFESHIYV-GSSLLDMYAK 206 (634)
Q Consensus 131 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l---l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~y~~ 206 (634)
-..+...|++.+|+.-|....+- |...|.++ ...|...|....|..-+..+++. .||-.. .---...+.+
T Consensus 45 Gk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 45 GKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhh
Confidence 34444455555555555555431 22222222 22344455555555555555443 333211 1111234566
Q ss_pred cCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHH
Q 006705 207 AGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHV 286 (634)
Q Consensus 207 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~ 286 (634)
.|.++.|..-|+.+.+.++. -+....++.+.-..++-.. ....+..+...|+...+......+
T Consensus 119 ~Gele~A~~DF~~vl~~~~s-~~~~~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPS-NGLVLEAQSKLALIQEHWV----------------LVQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred cccHHHHHHHHHHHHhcCCC-cchhHHHHHHHHhHHHHHH----------------HHHHHHHHhcCCchhhHHHHHHHH
Confidence 77777777777766543221 0011111111111111111 122233344556666666666666
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhc---CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHH
Q 006705 287 LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM---SERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363 (634)
Q Consensus 287 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~ 363 (634)
++.. +.|...+..-..+|...|++..|+.-++.. ...+....--+-..+...|+.+.++...++..+ +.||..
T Consensus 182 lEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK---ldpdHK 257 (504)
T KOG0624|consen 182 LEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK---LDPDHK 257 (504)
T ss_pred HhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc---cCcchh
Confidence 6654 567777777777888888888776655543 345666666667777778888888877777764 456653
Q ss_pred HHHHH-------------HHHHhccCcHHHHHHHHHHhhhccCCccCC-----hHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006705 364 TYLAV-------------LSGCSHGGMEDRGLAVFHEIVDCKDGFEPE-----IEHYGCVVDMLGRAGRVGEALEFIKNM 425 (634)
Q Consensus 364 t~~~l-------------l~a~~~~g~~~~a~~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m 425 (634)
..-.. +......+.+.++.+-.+...+. .|. ...+..+-..|...|++.+|++...+.
T Consensus 258 ~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~----ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev 333 (504)
T KOG0624|consen 258 LCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN----EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV 333 (504)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc----CCcccceeeeeeheeeecccccCCHHHHHHHHHHH
Confidence 21111 01122344455555555555432 222 122333444455566666666666554
Q ss_pred -CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCC
Q 006705 426 -PFEPT-AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENA 465 (634)
Q Consensus 426 -~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 465 (634)
.+.|| +.++.--..+|.....++.|..-++++.+.+|++.
T Consensus 334 L~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 334 LDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred HhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 33344 44454455666666666777777777777766653
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.7e-05 Score=87.23 Aligned_cols=200 Identities=13% Similarity=0.124 Sum_probs=168.1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC--------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHH
Q 006705 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER--------TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363 (634)
Q Consensus 292 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~ 363 (634)
|.....|-..|......++++.|++++++.... -...|.+++......|.-+...++|++..+. . --..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--c-d~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--C-DAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--c-chHH
Confidence 455677888888888999999999999887632 3457999998888889888899999999875 2 2246
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHHHHHHHHH
Q 006705 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM----PFEPTAAILGSLLG 439 (634)
Q Consensus 364 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~ 439 (634)
.|..|+..|.+.+..++|-++++.|.+++ .-...+|..+++.+.+..+-+.|..++.+. |-+.......-.+.
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF---~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKF---GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHh---cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHH
Confidence 68889999999999999999999999865 467889999999999999999999999875 32223444555666
Q ss_pred HHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCCCc
Q 006705 440 ACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVT 497 (634)
Q Consensus 440 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 497 (634)
.-.++|+.+.|..+|+..+.-.|.-...|..++++=.+.|..+.++.+|++....++.
T Consensus 1609 LEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 6788999999999999999999998999999999999999999999999999887764
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.7e-05 Score=70.29 Aligned_cols=289 Identities=15% Similarity=0.080 Sum_probs=164.1
Q ss_pred hHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC--CChhhHHH-HHHHHHh
Q 006705 161 TFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE--RDVVSCTA-IISGYAQ 237 (634)
Q Consensus 161 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~-li~~~~~ 237 (634)
-+.+++..+.+..++..+.+++..-.+.. +.+....+.|..+|....++..|-..++++.. |...-|.. -...+-+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK 90 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH
Confidence 34555555556666667777666655543 33455556677777777777777777777654 22222221 1233445
Q ss_pred cCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 006705 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317 (634)
Q Consensus 238 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 317 (634)
.+.+.+|+++...|... |+...-..-+.+.. .-..+++..++.+
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAI---------------------------------kYse~Dl~g~rsL 134 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAI---------------------------------KYSEGDLPGSRSL 134 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHH---------------------------------hcccccCcchHHH
Confidence 67777788777777642 22211111111111 1123444444444
Q ss_pred HhhcC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCcc
Q 006705 318 FDNMS-ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFE 396 (634)
Q Consensus 318 f~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 396 (634)
.+..+ +.+..+.+.......+.|++++|++-|+...+-+|..|- ..|+..+. ..+.|+++.|+++..+++++ |++
T Consensus 135 veQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl-lAYniALa-Hy~~~qyasALk~iSEIieR--G~r 210 (459)
T KOG4340|consen 135 VEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL-LAYNLALA-HYSSRQYASALKHISEIIER--GIR 210 (459)
T ss_pred HHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch-hHHHHHHH-HHhhhhHHHHHHHHHHHHHh--hhh
Confidence 44444 233333333444444555555555555555554344442 33433332 22345555555555555544 332
Q ss_pred C-------------C---------------hHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhc
Q 006705 397 P-------------E---------------IEHYGCVVDMLGRAGRVGEALEFIKNMPF----EPTAAILGSLLGACRVH 444 (634)
Q Consensus 397 p-------------~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~p~~~~~~~ll~~~~~~ 444 (634)
. | +..+|.-...+.+.|+++.|.+-+..||- ..|++|...+.- ....
T Consensus 211 ~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al-~n~~ 289 (459)
T KOG4340|consen 211 QHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQAL-MNMD 289 (459)
T ss_pred cCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHH-hccc
Confidence 1 1 12233333445688999999999999952 346676654432 2345
Q ss_pred CCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHH
Q 006705 445 YNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELM 491 (634)
Q Consensus 445 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 491 (634)
+++..+.+-++-+++++|-.++++..++-+|++..-++-|..++-+-
T Consensus 290 ~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 290 ARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred CCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 66777777777888889887899999999999999999998887543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00044 Score=80.08 Aligned_cols=323 Identities=13% Similarity=0.020 Sum_probs=196.3
Q ss_pred HHHcCCChHHHHHHHhhcCC----CCcchHHHHHHHHHhCCChhHHHHHHHHHHHC--CC----CCChh--hHHHHHHHH
Q 006705 102 FYNKCECLSDARKMFDEMRE----RNVVSWTAMISAYSQKAHSFEALNLFIRMLRS--DT----EPNEF--TFATVLTSC 169 (634)
Q Consensus 102 ~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~----~p~~~--t~~~ll~~~ 169 (634)
.....|+++.+..+++.++. .+..........+...|++++|..++...... .. .|... ....+-..+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34456788888888877743 22333334444556778888888888776542 11 11111 112222345
Q ss_pred hccCCcHHHHHHHHHHHHhCCCCc----hHHHHHHHHHHHhcCCHHHHHHHHccCCC-------CC--hhhHHHHHHHHH
Q 006705 170 AGAFGFELGKQIHSLIIKSNFESH----IYVGSSLLDMYAKAGRIHEARGVFECLPE-------RD--VVSCTAIISGYA 236 (634)
Q Consensus 170 ~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~m~~-------~~--~~~~~~li~~~~ 236 (634)
...|+++.+...++...+.-...+ ....+.+...+...|++++|...+++... +. ..+++.+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 578888999888888776321112 13445666777888999888888776542 11 234455666778
Q ss_pred hcCChHHHHHHHHHHhhc----CCc--c-ChhhHHHHHHHHhcccchHHHHHHHHHHHHc----CCCCchhHHHHHHHHH
Q 006705 237 QLGLDEEAIELFRKLQVE----GMI--S-NYVTYASVLTALSGLAALGHGKQVHSHVLRF----EIPSYVVLQNSLIDMY 305 (634)
Q Consensus 237 ~~g~~~~A~~~~~~m~~~----g~~--p-~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~----~~~~~~~~~~~li~~~ 305 (634)
..|++++|...+++.... +.. | ....+..+...+...|++++|...+...... +.......+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 889999998888776542 211 1 1223344445566678999988888876543 2111234445566678
Q ss_pred HhcCCHHHHHHHHhhcCC----C-ChhhHHH-----HHHHHHhcCChHHHHHHHHHHHHcCCCCCCH---HHHHHHHHHH
Q 006705 306 SKCGSLTYSRRVFDNMSE----R-TVISWNA-----MLVGYSKHGMGREVVELFNLMREENKVKPDS---VTYLAVLSGC 372 (634)
Q Consensus 306 ~~~g~~~~A~~~f~~m~~----~-~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~---~t~~~ll~a~ 372 (634)
...|+.+.|...++.... . ....|.. .+..+...|+.+.|.+++...... ...... .....+..++
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHH
Confidence 888999888887776531 1 1111111 224455678888888887665432 111111 1134566677
Q ss_pred hccCcHHHHHHHHHHhhhccC--CccC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006705 373 SHGGMEDRGLAVFHEIVDCKD--GFEP-EIEHYGCVVDMLGRAGRVGEALEFIKNM 425 (634)
Q Consensus 373 ~~~g~~~~a~~~~~~~~~~~~--~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 425 (634)
...|+.++|...++....... +..+ ...+...+..+|.+.|+.++|.+.+.+.
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~A 757 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEA 757 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888889888888887654210 3333 2456777788888999999998888876
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.6e-05 Score=72.75 Aligned_cols=147 Identities=7% Similarity=0.058 Sum_probs=112.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHc
Q 006705 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA 412 (634)
Q Consensus 333 i~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 412 (634)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+. -+.+...|..|...|...
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~-----~~--------~~~~~~~~~~~~i~~l~~~L~~---~P~~~~~w~~Lg~~~~~~ 86 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD-----PL--------HQFASQQTPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWR 86 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC-----cc--------ccccCchhHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHC
Confidence 3457777877765444332221 11 0222366777888778887753 356788999999999999
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCC--chHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHH
Q 006705 413 GRVGEALEFIKNM-PFEP-TAAILGSLLGA-CRVHYN--VDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRV 487 (634)
Q Consensus 413 g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~-~~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 487 (634)
|++++|...|++. ...| +...+..+..+ +...|+ .++|..+++++++.+|+++.++..++..+.+.|++++|...
T Consensus 87 g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 87 NDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999987 3334 56677777776 466676 58999999999999999999999999999999999999999
Q ss_pred HHHHhhCC
Q 006705 488 RELMKEKA 495 (634)
Q Consensus 488 ~~~m~~~~ 495 (634)
++++.+..
T Consensus 167 ~~~aL~l~ 174 (198)
T PRK10370 167 WQKVLDLN 174 (198)
T ss_pred HHHHHhhC
Confidence 99997653
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.0016 Score=66.29 Aligned_cols=341 Identities=12% Similarity=0.027 Sum_probs=169.1
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHhcCCHH
Q 006705 133 AYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF-ESHIYVGSSLLDMYAKAGRIH 211 (634)
Q Consensus 133 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~ 211 (634)
-+.++|++++|+.....++..+ +-|...+..=+-+..+.+.++.|..+.+. .+. ..+...+--=..+..+.+..+
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~~~~~~~~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGALLVINSFFFEKAYCEYRLNKLD 96 (652)
T ss_pred HhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cchhhhcchhhHHHHHHHHHcccHH
Confidence 3445556666666666665543 22333444444455555555555533221 110 111111001122233567777
Q ss_pred HHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChh-hHHHHHHHHhcccchHHHHHHHHHHHHcC
Q 006705 212 EARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYV-TYASVLTALSGLAALGHGKQVHSHVLRFE 290 (634)
Q Consensus 212 ~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~i~~~~~~~~ 290 (634)
+|.+.++.....|..+...-...+-+.|++++|+.+|+.+.+.+.+--.. --..++.+-.. ..+. .+....
T Consensus 97 ealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~----~~q~v~ 168 (652)
T KOG2376|consen 97 EALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ----LLQSVP 168 (652)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH----HHHhcc
Confidence 77777774444443344444455667777777777777776654321111 11112111110 0110 111111
Q ss_pred CCCc---hhHHHHHHHHHHhcCCHHHHHHHHhhcC--------CC-----Chh-----hHHHHHHHHHhcCChHHHHHHH
Q 006705 291 IPSY---VVLQNSLIDMYSKCGSLTYSRRVFDNMS--------ER-----TVI-----SWNAMLVGYSKHGMGREVVELF 349 (634)
Q Consensus 291 ~~~~---~~~~~~li~~~~~~g~~~~A~~~f~~m~--------~~-----~~~-----~~~~li~~~~~~g~~~~A~~~~ 349 (634)
..|+ ...|| ....+...|++.+|+++++... .. ++. .--.|.-.+...|+-.+|.+++
T Consensus 169 ~v~e~syel~yN-~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 169 EVPEDSYELLYN-TACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred CCCcchHHHHHH-HHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 1111 11222 2334556778888888777661 11 111 1223445677889999999999
Q ss_pred HHHHHcCCCCCCHHH---HHHHHHHHhccCcHHH--HHHHHHHhhhccC---------CccCChHHHHHHHHHHHHcCCH
Q 006705 350 NLMREENKVKPDSVT---YLAVLSGCSHGGMEDR--GLAVFHEIVDCKD---------GFEPEIEHYGCVVDMLGRAGRV 415 (634)
Q Consensus 350 ~~m~~~~g~~pd~~t---~~~ll~a~~~~g~~~~--a~~~~~~~~~~~~---------~~~p~~~~~~~li~~~~~~g~~ 415 (634)
....+. -.+|... +..=|-+...-.++-. ++..++....... .-.-...--++++.+| .+.-
T Consensus 248 ~~~i~~--~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~ 323 (652)
T KOG2376|consen 248 VDIIKR--NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKM 323 (652)
T ss_pred HHHHHh--cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhH
Confidence 999886 4555522 2222223333222222 2222222211100 0000111122334444 4566
Q ss_pred HHHHHHHHhCCCC-CCHHHHHHHH-HHHHhcC-CchHHHHHHHHHhccCCCC-CchHHHHHHHHhhcCCcHHHHHHHHHH
Q 006705 416 GEALEFIKNMPFE-PTAAILGSLL-GACRVHY-NVDIGEFVGQRLMEIEPEN-AGNYVILSNLYASAGRWEDVTRVRELM 491 (634)
Q Consensus 416 ~~A~~~~~~m~~~-p~~~~~~~ll-~~~~~~~-~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m 491 (634)
+.+.++-...+.. |.. .+..++ .+..... ....+..++....+..|.+ ......++......|+++.|.+++...
T Consensus 324 ~q~r~~~a~lp~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~ 402 (652)
T KOG2376|consen 324 DQVRELSASLPGMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLF 402 (652)
T ss_pred HHHHHHHHhCCccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 6777777777533 443 444444 3333333 3667777888888888875 345556778889999999999999933
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00087 Score=67.43 Aligned_cols=394 Identities=13% Similarity=0.041 Sum_probs=227.0
Q ss_pred HHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC--CC-cchHHHHHHHHHhCCChhHH
Q 006705 67 ACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE--RN-VVSWTAMISAYSQKAHSFEA 143 (634)
Q Consensus 67 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A 143 (634)
+....|+++.|...|...+... +++...|+.-..+|++.|++++|.+=-.+..+ |+ ...|+-...++.-.|++++|
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHH
Confidence 3446678888888888777765 44777777778888888888777765544433 32 23577777777777888888
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhcc---CCcHHHHHHHHHHHH----hCCCCchHHHHHHHH----------HHHh
Q 006705 144 LNLFIRMLRSDTEPNEFTFATVLTSCAGA---FGFELGKQIHSLIIK----SNFESHIYVGSSLLD----------MYAK 206 (634)
Q Consensus 144 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---~~~~~a~~~~~~~~~----~g~~~~~~~~~~li~----------~y~~ 206 (634)
+.-|.+-++.. +.|...++.+..+.... ++.-..-.+|..+.. .+... ...|..++. .|..
T Consensus 90 ~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~-~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 90 ILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLS-DPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhc-cHHHHHHHHHhhcCcHhhhcccc
Confidence 88887766532 22344455555544111 000000011111100 00000 001111111 1111
Q ss_pred cCCHHHHHHHHccC----------------CCC------------C----------hhhHHHHHHHHHhcCChHHHHHHH
Q 006705 207 AGRIHEARGVFECL----------------PER------------D----------VVSCTAIISGYAQLGLDEEAIELF 248 (634)
Q Consensus 207 ~g~~~~A~~~~~~m----------------~~~------------~----------~~~~~~li~~~~~~g~~~~A~~~~ 248 (634)
-.++..|...+... ..| | ..-.-.+.++.-+..+++.|++-+
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 11122222222111 011 0 012344666777778888888888
Q ss_pred HHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCC--c----hhHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 006705 249 RKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPS--Y----VVLQNSLIDMYSKCGSLTYSRRVFDNMS 322 (634)
Q Consensus 249 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~--~----~~~~~~li~~~~~~g~~~~A~~~f~~m~ 322 (634)
....... -+..-++..-.++...|.+......-...++.|... + ......+..+|.+.++++.|...|.+..
T Consensus 248 ~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaL 325 (539)
T KOG0548|consen 248 AKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKAL 325 (539)
T ss_pred HHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHh
Confidence 8877653 333334445556677777766666555555544211 0 1112224457888899999999998855
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHH
Q 006705 323 ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV-TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEH 401 (634)
Q Consensus 323 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~ 401 (634)
.+... -....+....++++...+...- +.|+.. -.-.=...+.+.|++..|...|.++++. . +-|...
T Consensus 326 te~Rt-----~~~ls~lk~~Ek~~k~~e~~a~---~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~-P~Da~l 394 (539)
T KOG0548|consen 326 TEHRT-----PDLLSKLKEAEKALKEAERKAY---INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--D-PEDARL 394 (539)
T ss_pred hhhcC-----HHHHHHHHHHHHHHHHHHHHHh---hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--C-CchhHH
Confidence 32111 1112233344555555544432 344441 1222245678899999999999999975 2 557889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 006705 402 YGCVVDMLGRAGRVGEALEFIKNM-PFEPT-AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYA 476 (634)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 476 (634)
|....-+|.+.|.+.+|++--+.. ...|+ ...|.-=..++....+++.|...+++.++.+|++......+..++.
T Consensus 395 YsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 395 YSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 999999999999999998876654 33444 3345555566677788999999999999999997665554444444
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00031 Score=75.31 Aligned_cols=377 Identities=11% Similarity=-0.010 Sum_probs=222.2
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-C--hhhHHHHH
Q 006705 93 VYLRTRLIVFYNKCECLSDARKMFDEMRE---RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEP-N--EFTFATVL 166 (634)
Q Consensus 93 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~--~~t~~~ll 166 (634)
...|..|...|...-+...|.+.|+..-+ -+..+|......|++..++++|..+.-.--+ ..| - ...|...-
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q--ka~a~~~k~nW~~rG 569 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ--KAPAFACKENWVQRG 569 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh--hchHHHHHhhhhhcc
Confidence 44678888888888889999999998766 4677899999999999999999988322211 111 1 11222233
Q ss_pred HHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHH---HHHHHHhcCChHH
Q 006705 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTA---IISGYAQLGLDEE 243 (634)
Q Consensus 167 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~---li~~~~~~g~~~~ 243 (634)
-.+...++...+..-++...+.. +.|...|..|..+|.++|++..|.++|++...-++.+|-. ....-+..|.+.+
T Consensus 570 ~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 570 PYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred ccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHH
Confidence 34667788888888888887765 6688899999999999999999999998876544443322 2223456899999
Q ss_pred HHHHHHHHhhcC------CccChhhHHHHHHHHhcccch-------HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 006705 244 AIELFRKLQVEG------MISNYVTYASVLTALSGLAAL-------GHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS 310 (634)
Q Consensus 244 A~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~-------~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~ 310 (634)
|+..+....... ..--..++..+...+...|-. +.+.+.+..........+...|-.+-
T Consensus 649 ald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~as-------- 720 (1238)
T KOG1127|consen 649 ALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVAS-------- 720 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHh--------
Confidence 999888775431 011111222222222222222 22333333333333233333333222
Q ss_pred HHHHHHHHhhcCCCChh--hHHHHHHH-HHhcCCh---H---HHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc----c--
Q 006705 311 LTYSRRVFDNMSERTVI--SWNAMLVG-YSKHGMG---R---EVVELFNLMREENKVKPDSVTYLAVLSGCSH----G-- 375 (634)
Q Consensus 311 ~~~A~~~f~~m~~~~~~--~~~~li~~-~~~~g~~---~---~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~----~-- 375 (634)
+|..+|-... |+.+ .+..++.. +-..+.. + -+.+.+-.-.+ ...+..+|..+...|.+ .
T Consensus 721 --dac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls---l~~~~~~WyNLGinylr~f~~l~e 794 (1238)
T KOG1127|consen 721 --DACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS---LAIHMYPWYNLGINYLRYFLLLGE 794 (1238)
T ss_pred --HHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH---HhhccchHHHHhHHHHHHHHHcCC
Confidence 2333444433 3321 11111111 1111111 1 11122211111 11223334333332221 1
Q ss_pred -C-cHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHH
Q 006705 376 -G-MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDIGE 451 (634)
Q Consensus 376 -g-~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~ 451 (634)
+ +...|..-+...++. -..+...|+.|.-+ .-.|.+.-|...|-+- ..+....+|..+...|....|++.|.
T Consensus 795 t~~~~~~Ai~c~KkaV~L---~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~ 870 (1238)
T KOG1127|consen 795 TMKDACTAIRCCKKAVSL---CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAE 870 (1238)
T ss_pred cchhHHHHHHHHHHHHHH---hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhh
Confidence 1 223455555555532 13355666766555 5556777777766554 33456778888888888999999999
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHH
Q 006705 452 FVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVREL 490 (634)
Q Consensus 452 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 490 (634)
.++.+...++|.|...+.-...+.-..|+.-++..+|..
T Consensus 871 ~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 871 PAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred HHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 999999999999888887777777777888888877776
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00024 Score=69.92 Aligned_cols=177 Identities=10% Similarity=0.002 Sum_probs=103.8
Q ss_pred HHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCh--HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 006705 311 LTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMG--REVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVF 385 (634)
Q Consensus 311 ~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~ 385 (634)
++++...++++.+ ++..+|+.....+.+.|+. ++++++++++.+. -+-|..+|.....++...|+++++++.+
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4555555554432 2334455443334444432 4556666666654 2334556666666666666677777777
Q ss_pred HHhhhccCCccCChHHHHHHHHHHHHc---CC----HHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcC----CchHHHH
Q 006705 386 HEIVDCKDGFEPEIEHYGCVVDMLGRA---GR----VGEALEFIKNM-PF-EPTAAILGSLLGACRVHY----NVDIGEF 452 (634)
Q Consensus 386 ~~~~~~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~----~~~~a~~ 452 (634)
+.+++. . ..+...|+.....+.+. |. .+++++...++ .. +-|...|+.+...+...+ +..++..
T Consensus 166 ~~~I~~--d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~ 242 (320)
T PLN02789 166 HQLLEE--D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSS 242 (320)
T ss_pred HHHHHH--C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHH
Confidence 776653 1 23445555554444433 22 23455555343 22 345677888887777633 3456777
Q ss_pred HHHHHhccCCCCCchHHHHHHHHhhcC------------------CcHHHHHHHHHHh
Q 006705 453 VGQRLMEIEPENAGNYVILSNLYASAG------------------RWEDVTRVRELMK 492 (634)
Q Consensus 453 ~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m~ 492 (634)
...++...+|.++.+...|+++|+... ..++|.++++.+.
T Consensus 243 ~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 243 VCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 888888888888888889999998642 2366777777773
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00018 Score=79.62 Aligned_cols=223 Identities=17% Similarity=0.180 Sum_probs=174.5
Q ss_pred CCC-hhhHHHHHHHHhccCCcHHHHHHHHHHHHh-CCC---CchHHHHHHHHHHHhcCCHHHHHHHHccCCCC-C-hhhH
Q 006705 156 EPN-EFTFATVLTSCAGAFGFELGKQIHSLIIKS-NFE---SHIYVGSSLLDMYAKAGRIHEARGVFECLPER-D-VVSC 228 (634)
Q Consensus 156 ~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~---~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-~-~~~~ 228 (634)
.|| ...|..-|......++++.|+++.+++++. ++. .-..+|.+++++-...|.-+...++|++..+- | -..|
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~ 1533 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVH 1533 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHH
Confidence 344 456777777888899999999999998864 221 12457888888888889889999999987652 3 3468
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHh
Q 006705 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP-SYVVLQNSLIDMYSK 307 (634)
Q Consensus 229 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~-~~~~~~~~li~~~~~ 307 (634)
..|...|.+.+.+++|.++|+.|.+. ..-....|...+..+.+...-+.|..++.++++.=.. -.+.+..-.+.+-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 88999999999999999999999875 3445667888888899999989999999988876321 246667777888899
Q ss_pred cCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH--HHHHHHHHHHhccCcHHH
Q 006705 308 CGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS--VTYLAVLSGCSHGGMEDR 380 (634)
Q Consensus 308 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~--~t~~~ll~a~~~~g~~~~ 380 (634)
+|+.+.++.+|+.... +-...|+..|..-.++|+.+.+..+|++.... ++.|-. ..|.-.|..=.+.|+-+.
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l-~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL-KLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc-CCChhHhHHHHHHHHHHHHhcCchhh
Confidence 9999999999998874 35678999999999999999999999999998 787765 445555554444455433
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00085 Score=63.51 Aligned_cols=287 Identities=14% Similarity=0.123 Sum_probs=192.7
Q ss_pred HHHHHHhcCCHHHHHHHHccCCCCChhhHHHHH---HHHHhcCChHHHHHHHHHHhhcCCccChhhHH-HHHHHHhcccc
Q 006705 200 LLDMYAKAGRIHEARGVFECLPERDVVSCTAII---SGYAQLGLDEEAIELFRKLQVEGMISNYVTYA-SVLTALSGLAA 275 (634)
Q Consensus 200 li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~ 275 (634)
|.+.+...|++.+|+.-|....+-|+..|-++. ..|...|+..-|+.-|.+..+. +||-..-. .--..+.+.|.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhccc
Confidence 445555667777777777777666666665543 3566677777777777666653 56643211 11233456777
Q ss_pred hHHHHHHHHHHHHcCCCCc----h----------hHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHh
Q 006705 276 LGHGKQVHSHVLRFEIPSY----V----------VLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSK 338 (634)
Q Consensus 276 ~~~a~~i~~~~~~~~~~~~----~----------~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~ 338 (634)
++.|..=|..+++.....+ . ......+..+...|+...|+.....+.+ -|+..|..-..+|..
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~ 201 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIA 201 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHh
Confidence 7777777777766542111 0 1111233345567888888888887764 377777778889999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHH----HHHH---H-----
Q 006705 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEH----YGCV---V----- 406 (634)
Q Consensus 339 ~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~----~~~l---i----- 406 (634)
.|.+..|+.=++...+. -.-+..++--+-..+...|+.+..+...++.. .+.||-.. |..| +
T Consensus 202 ~~e~k~AI~Dlk~askL--s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL----KldpdHK~Cf~~YKklkKv~K~les 275 (504)
T KOG0624|consen 202 EGEPKKAIHDLKQASKL--SQDNTEGHYKISQLLYTVGDAENSLKEIRECL----KLDPDHKLCFPFYKKLKKVVKSLES 275 (504)
T ss_pred cCcHHHHHHHHHHHHhc--cccchHHHHHHHHHHHhhhhHHHHHHHHHHHH----ccCcchhhHHHHHHHHHHHHHHHHH
Confidence 99999999888777664 23345566666677788899999888888877 44565332 2221 1
Q ss_pred -HHHHHcCCHHHHHHHHHhC-CCCCCHH-----HHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcC
Q 006705 407 -DMLGRAGRVGEALEFIKNM-PFEPTAA-----ILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479 (634)
Q Consensus 407 -~~~~~~g~~~~A~~~~~~m-~~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 479 (634)
....+.+++.++.+-.++. ...|... .+..+-.+++..+++-+|.+...++++++|+|..++.--..+|.-..
T Consensus 276 ~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE 355 (504)
T KOG0624|consen 276 AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDE 355 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhH
Confidence 1123456666666655553 4445422 23344467788899999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhhC
Q 006705 480 RWEDVTRVRELMKEK 494 (634)
Q Consensus 480 ~~~~A~~~~~~m~~~ 494 (634)
.+++|+.-++...+.
T Consensus 356 ~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 356 MYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999888654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.3e-05 Score=66.66 Aligned_cols=119 Identities=7% Similarity=0.003 Sum_probs=98.2
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHH
Q 006705 398 EIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLY 475 (634)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 475 (634)
+.+..-.+...+...|++++|.++|+-. .. +-+..-|-.|..+|...|++++|...+.++..++|+++.++..++.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4555666777788999999999999986 22 346678899999999999999999999999999999999999999999
Q ss_pred hhcCCcHHHHHHHHHHhhCCCccCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 006705 476 ASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539 (634)
Q Consensus 476 ~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 539 (634)
...|+.+.|.+.|+...... ..+|+...+.++++.....+.
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 99999999999999886431 245666667667777666554
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.9e-06 Score=53.97 Aligned_cols=35 Identities=31% Similarity=0.525 Sum_probs=32.6
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh
Q 006705 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNE 159 (634)
Q Consensus 125 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 159 (634)
.+||+||.+|++.|++++|.++|++|...|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.6e-05 Score=66.56 Aligned_cols=108 Identities=10% Similarity=-0.081 Sum_probs=63.7
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHH
Q 006705 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACR 442 (634)
Q Consensus 365 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~ 442 (634)
+.....++...|++++|...|+..... -+.+...|..+..++.+.|++++|...|++. .. +.+...|..+..++.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMA---QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 334445556666666666666666542 1335556666666666666666666666665 11 234555666666666
Q ss_pred hcCCchHHHHHHHHHhccCCCCCchHHHHHHHH
Q 006705 443 VHYNVDIGEFVGQRLMEIEPENAGNYVILSNLY 475 (634)
Q Consensus 443 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 475 (634)
..|+.++|...++++++..|+++..+.....+.
T Consensus 104 ~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 666666666666666666666666555544443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.7e-05 Score=67.35 Aligned_cols=106 Identities=7% Similarity=-0.080 Sum_probs=90.8
Q ss_pred HHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhcc
Q 006705 383 AVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEI 460 (634)
Q Consensus 383 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 460 (634)
.+++...+ +.|+ .+..+...+...|++++|...|+.. .. +.+...|..+..++...|++++|...++++.++
T Consensus 14 ~~~~~al~----~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS----VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH----cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34555553 3444 4666788899999999999999986 33 347788999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 461 EPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 461 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
+|+++..+..++.+|...|++++|.+.++...+.
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998764
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.4e-06 Score=53.49 Aligned_cols=35 Identities=31% Similarity=0.574 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccCh
Q 006705 226 VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNY 260 (634)
Q Consensus 226 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 260 (634)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0002 Score=65.50 Aligned_cols=154 Identities=10% Similarity=0.116 Sum_probs=107.4
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHH
Q 006705 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRG 381 (634)
Q Consensus 302 i~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a 381 (634)
+..|.+.|+++......+.+..+. ..|...++.++++..+++..+. -+.|...|..+...|...|++++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 445777777776654443332221 0122355667777777777664 355667788888888888899999
Q ss_pred HHHHHHhhhccCCccCChHHHHHHHHHH-HHcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHH
Q 006705 382 LAVFHEIVDCKDGFEPEIEHYGCVVDML-GRAGR--VGEALEFIKNM-PFEP-TAAILGSLLGACRVHYNVDIGEFVGQR 456 (634)
Q Consensus 382 ~~~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~--~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 456 (634)
...|+...+. .+.+...+..+..++ .+.|+ .++|.+++++. ...| +...+..+...+...|++++|...+++
T Consensus 93 ~~a~~~Al~l---~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQALQL---RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888853 233677778887764 67777 48888888886 3333 566777777888889999999999999
Q ss_pred HhccCCCCCchH
Q 006705 457 LMEIEPENAGNY 468 (634)
Q Consensus 457 ~~~~~p~~~~~~ 468 (634)
++++.|++..-+
T Consensus 170 aL~l~~~~~~r~ 181 (198)
T PRK10370 170 VLDLNSPRVNRT 181 (198)
T ss_pred HHhhCCCCccHH
Confidence 998888865433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00014 Score=66.58 Aligned_cols=134 Identities=16% Similarity=0.098 Sum_probs=100.3
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHH
Q 006705 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM--PFEPTAAILG 435 (634)
Q Consensus 358 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~ 435 (634)
..|+......+-.++...|+-+....+...... ....+....+.++....+.|++.+|...|++. +-++|...|+
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~---~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~ 138 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI---AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWN 138 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc---cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhh
Confidence 345433335555667777777777777766553 23445666667888888888888888888886 4456778888
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 436 SLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 436 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
.+.-+|.+.|+.+.|...+.+++++.|.++..++.|...|.-.|+++.|..++......
T Consensus 139 ~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 139 LLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred HHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 88888888888888888888888888888888888888888888888888888877654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00015 Score=73.25 Aligned_cols=216 Identities=13% Similarity=0.134 Sum_probs=145.1
Q ss_pred HhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHH
Q 006705 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE---RDVVSCTAIISGYAQLGLDEEAI 245 (634)
Q Consensus 169 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 245 (634)
+.+.|++.+|.-.|+..++.. +.+...|.-|.-.-...++-..|+..+.+..+ .|....-+|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 346677888888888887765 55677777777777777777777777766544 35566666777788888888888
Q ss_pred HHHHHHhhcCCc--------cChhhHHHHHHHHhcccchHHHHHHHHHHHH-cCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 006705 246 ELFRKLQVEGMI--------SNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYSRR 316 (634)
Q Consensus 246 ~~~~~m~~~g~~--------p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~ 316 (634)
..|+.-.....+ ++..+-.. ..+.....+....++|-.+.. .+...|+.++..|.-.|--.|++++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 888776543210 00000000 111222233444444444443 4445777788888888888888888888
Q ss_pred HHhhcCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 006705 317 VFDNMSE--R-TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS-VTYLAVLSGCSHGGMEDRGLAVFHEIVD 390 (634)
Q Consensus 317 ~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 390 (634)
.|+.... | |...||.|...++...+.++|+..|++..+ ++|+- .....|.-+|...|.+++|...|=..+.
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq---LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ---LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh---cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 8887763 3 677888888888888888888888888876 46765 3444556678888888888877765543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00049 Score=72.23 Aligned_cols=127 Identities=13% Similarity=0.155 Sum_probs=77.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCC
Q 006705 335 GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414 (634)
Q Consensus 335 ~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 414 (634)
-+-..|+.+.|+.+|...+. |-+++...+-.|+.++|-++-++- -|......|..+|-..|+
T Consensus 921 YlES~GemdaAl~~Y~~A~D----------~fs~VrI~C~qGk~~kAa~iA~es--------gd~AAcYhlaR~YEn~g~ 982 (1416)
T KOG3617|consen 921 YLESVGEMDAALSFYSSAKD----------YFSMVRIKCIQGKTDKAARIAEES--------GDKAACYHLARMYENDGD 982 (1416)
T ss_pred HHhcccchHHHHHHHHHhhh----------hhhheeeEeeccCchHHHHHHHhc--------ccHHHHHHHHHHhhhhHH
Confidence 33445666777776665543 334555566677888777765543 255666778999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC-----------CchHHHHHHHHhhcCCcHH
Q 006705 415 VGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN-----------AGNYVILSNLYASAGRWED 483 (634)
Q Consensus 415 ~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~ 483 (634)
+.+|..+|.+.. ++..-|..|..++--++-. .-++-..|.+ +.....-+.+|-++|.+.+
T Consensus 983 v~~Av~FfTrAq------afsnAIRlcKEnd~~d~L~---nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~k 1053 (1416)
T KOG3617|consen 983 VVKAVKFFTRAQ------AFSNAIRLCKENDMKDRLA---NLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGK 1053 (1416)
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHhcCHHHHHH---HHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHH
Confidence 999999998763 4455555555554433221 1111111111 1123345677888999888
Q ss_pred HHHHH
Q 006705 484 VTRVR 488 (634)
Q Consensus 484 A~~~~ 488 (634)
|+++-
T Consensus 1054 ALelA 1058 (1416)
T KOG3617|consen 1054 ALELA 1058 (1416)
T ss_pred HHHHH
Confidence 87753
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=9.7e-05 Score=76.62 Aligned_cols=189 Identities=15% Similarity=0.140 Sum_probs=128.3
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 006705 290 EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369 (634)
Q Consensus 290 ~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll 369 (634)
+++|--..-..+...+.++|-...|..+|++. ..|.-.|-.|...|+..+|..+..+-.+. +||..-|..+.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek---~~d~~lyc~LG 464 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK---DPDPRLYCLLG 464 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC---CCcchhHHHhh
Confidence 34566666678889999999999999999975 67888899999999999999988777653 78899999998
Q ss_pred HHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCc
Q 006705 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEP-TAAILGSLLGACRVHYNV 447 (634)
Q Consensus 370 ~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~ 447 (634)
+......-+++|.++++....+ .-..+.....+.++++++.+.|+.- .+.| ...+|-.+..+..+.+++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar---------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR---------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH---------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh
Confidence 8888888888888888766532 1111111122345666666665542 2222 334555555555666666
Q ss_pred hHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCC
Q 006705 448 DIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495 (634)
Q Consensus 448 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 495 (634)
+.|...|.....++|++...|+.+..+|.+.|+-.+|...+++..+-+
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 666666666666666666666666666666666666666666665444
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00016 Score=68.87 Aligned_cols=181 Identities=14% Similarity=0.003 Sum_probs=120.4
Q ss_pred ChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-Chh---hHH
Q 006705 259 NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP-S-YVVLQNSLIDMYSKCGSLTYSRRVFDNMSE--R-TVI---SWN 330 (634)
Q Consensus 259 ~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~---~~~ 330 (634)
....+......+...|+++.|...+..+.+.... + ....+..+...|.+.|++++|...|+++.+ | +.. ++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4456777778889999999999999999876421 1 124667788999999999999999999864 3 222 455
Q ss_pred HHHHHHHhc--------CChHHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHH
Q 006705 331 AMLVGYSKH--------GMGREVVELFNLMREENKVKPDSV-TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEH 401 (634)
Q Consensus 331 ~li~~~~~~--------g~~~~A~~~~~~m~~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~ 401 (634)
.+..++.+. |+.++|.+.|+++... .|+.. ....+... .. ...... ..
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~-~~---------~~~~~~----------~~ 168 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM-DY---------LRNRLA----------GK 168 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH-HH---------HHHHHH----------HH
Confidence 556666654 7889999999999876 45543 22222111 00 000000 11
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHhccCC
Q 006705 402 YGCVVDMLGRAGRVGEALEFIKNM----PFEP-TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEP 462 (634)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 462 (634)
...+...|.+.|++++|...+++. |..| ....|..+..++...|++++|...++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 124556677888888888877775 2122 245677777888888888888877776655444
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.7e-06 Score=51.39 Aligned_cols=34 Identities=26% Similarity=0.419 Sum_probs=30.6
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 006705 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEP 157 (634)
Q Consensus 124 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 157 (634)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4689999999999999999999999999999887
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00028 Score=76.72 Aligned_cols=160 Identities=9% Similarity=-0.043 Sum_probs=124.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHH
Q 006705 325 TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS-VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYG 403 (634)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~ 403 (634)
++..+-.|.....+.|++++|..+++...+. .||. .....+...+.+.+.+++|+...+..... -+-+.....
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~---~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~~ 158 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR---FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREIL 158 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHHH
Confidence 5778888889999999999999999999874 6765 66777888899999999999999999853 234577788
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCc
Q 006705 404 CVVDMLGRAGRVGEALEFIKNMP-FEP-TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW 481 (634)
Q Consensus 404 ~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 481 (634)
.+..++.+.|++++|.++|++.- ..| +..+|.++..++...|+.++|...++++.+...+-...|+.++ +++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~ 232 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDL 232 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHH
Confidence 88899999999999999999972 233 4778999999999999999999999999987665444444332 233
Q ss_pred HHHHHHHHHHhhCCC
Q 006705 482 EDVTRVRELMKEKAV 496 (634)
Q Consensus 482 ~~A~~~~~~m~~~~~ 496 (634)
..-...++.+.-.+.
T Consensus 233 ~~~~~~~~~~~~~~~ 247 (694)
T PRK15179 233 NADLAALRRLGVEGD 247 (694)
T ss_pred HHHHHHHHHcCcccc
Confidence 344445555543333
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00044 Score=63.33 Aligned_cols=152 Identities=11% Similarity=0.050 Sum_probs=84.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHH
Q 006705 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411 (634)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 411 (634)
+-..+...|+.+.+..+....... .+-|..............|++.+|...+++... .-++|...|+.+.-+|.+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~---l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR---LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc---cCCCChhhhhHHHHHHHH
Confidence 344455555555555555544321 222333333455555566666666666666654 335566666666666666
Q ss_pred cCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHH
Q 006705 412 AGRVGEALEFIKNM-PFE-PTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVR 488 (634)
Q Consensus 412 ~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 488 (634)
.|++++|..-|.+. .+. .+....+.|...+...|+.+.|+.++.......+.+...-..|.-+....|++++|..+.
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 66666666655554 222 233445555566666666666666666666655555556666666666666666666553
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.029 Score=60.34 Aligned_cols=68 Identities=15% Similarity=0.229 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhcCCch---HHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCCCccCC
Q 006705 433 ILGSLLGACRVHYNVD---IGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDP 500 (634)
Q Consensus 433 ~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 500 (634)
+.+.|+..|++.++.. +|.-+++......|.|...-..|+.+|+-.|-+..|.++++.+.-+.+..++
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDT 508 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhcc
Confidence 4567888999988866 5566778888899999888889999999999999999999999777666554
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00016 Score=75.12 Aligned_cols=228 Identities=11% Similarity=0.020 Sum_probs=113.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 006705 130 MISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209 (634)
Q Consensus 130 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 209 (634)
+...+...|-...|+.+|+++. .|..++.+|...|+..+|..+..+-++ -+||+..|..|.+......-
T Consensus 404 laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHH
Confidence 4445555666666666666552 244455566666666666666655555 25666666666665555555
Q ss_pred HHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHc
Q 006705 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF 289 (634)
Q Consensus 210 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~ 289 (634)
+++|.++++....+--..|+-+ ..++++++++.+.|+.-.+.
T Consensus 473 yEkawElsn~~sarA~r~~~~~---~~~~~~fs~~~~hle~sl~~----------------------------------- 514 (777)
T KOG1128|consen 473 YEKAWELSNYISARAQRSLALL---ILSNKDFSEADKHLERSLEI----------------------------------- 514 (777)
T ss_pred HHHHHHHhhhhhHHHHHhhccc---cccchhHHHHHHHHHHHhhc-----------------------------------
Confidence 5666666655433311111111 12245556665555544432
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC--CC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHH
Q 006705 290 EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS--ER-TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYL 366 (634)
Q Consensus 290 ~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~ 366 (634)
. +....+|-.+..++.++++++.|.+.|..-. +| +..+||.+-.+|.+.|+-.+|...+++..+. . .-+-..+-
T Consensus 515 n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWE 591 (777)
T KOG1128|consen 515 N-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWE 591 (777)
T ss_pred C-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeee
Confidence 2 2233344444444555555555555555443 23 3445555555555555555555555555554 2 22222333
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHH
Q 006705 367 AVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLG 410 (634)
Q Consensus 367 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~ 410 (634)
..+....+.|.+++|.+.+..+.... ....|..+...++....
T Consensus 592 Nymlvsvdvge~eda~~A~~rll~~~-~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 592 NYMLVSVDVGEFEDAIKAYHRLLDLR-KKYKDDEVLLIIVRTVL 634 (777)
T ss_pred chhhhhhhcccHHHHHHHHHHHHHhh-hhcccchhhHHHHHHHH
Confidence 33334445555555555555554432 11224444444444333
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.02 E-value=8.9e-06 Score=50.50 Aligned_cols=34 Identities=24% Similarity=0.466 Sum_probs=30.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCcc
Q 006705 225 VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS 258 (634)
Q Consensus 225 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 258 (634)
+.+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00024 Score=71.36 Aligned_cols=127 Identities=15% Similarity=0.082 Sum_probs=102.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCc
Q 006705 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377 (634)
Q Consensus 298 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~ 377 (634)
-.+|+..+...++++.|..+|+++.+.++..+..++..+...++-.+|++++++..+. .+-|...+..-...|.+.++
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 3456666677889999999999999887777778888888889999999999998875 33354555555556889999
Q ss_pred HHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 006705 378 EDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEP 429 (634)
Q Consensus 378 ~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 429 (634)
++.|+.+.+++.+. .+-+..+|..|+..|.+.|++++|+..++.+|..|
T Consensus 250 ~~lAL~iAk~av~l---sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 250 YELALEIAKKAVEL---SPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHHHh---CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 99999999999853 23356799999999999999999999999997543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.001 Score=66.30 Aligned_cols=144 Identities=15% Similarity=0.078 Sum_probs=111.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHH-HHHHHhccCcHHHHHHHHHHhhhccCCccCC-hHHHHHH
Q 006705 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLA-VLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE-IEHYGCV 405 (634)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~-ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l 405 (634)
.+--..-.+...|++++|+..++.+... .||...|.. ....+...++.++|.+.++.+... .|+ ....-.+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l----~P~~~~l~~~~ 380 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALAL----DPNSPLLQLNL 380 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCCccHHHHHH
Confidence 3333444566788999999999998875 466555544 455688899999999999999854 555 6667778
Q ss_pred HHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHH
Q 006705 406 VDMLGRAGRVGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWED 483 (634)
Q Consensus 406 i~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 483 (634)
.++|.+.|++.+|+.+++.. ..+.|...|..|..+|...|+..++.. .....|...|+|++
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~~G~~~~ 443 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYALAGRLEQ 443 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHhCCCHHH
Confidence 89999999999999999886 445678889999999999998776654 34567788899999
Q ss_pred HHHHHHHHhhCC
Q 006705 484 VTRVRELMKEKA 495 (634)
Q Consensus 484 A~~~~~~m~~~~ 495 (634)
|........++.
T Consensus 444 A~~~l~~A~~~~ 455 (484)
T COG4783 444 AIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHhc
Confidence 999998887664
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0042 Score=61.29 Aligned_cols=207 Identities=12% Similarity=0.025 Sum_probs=123.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCccChhh-HHHHHHHHhccc-chHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 006705 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVT-YASVLTALSGLA-ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYS 306 (634)
Q Consensus 229 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~-~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~ 306 (634)
+.+-..+...++.++|+.+..++.+. .|+..| |..--..+...+ .++++...+..+.+.. +.+..+|+...-.+.
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 33444455566777777777777653 444433 333333344445 4677777777777665 444555665544555
Q ss_pred hcCCH--HHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcc---Cc-
Q 006705 307 KCGSL--TYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG---GM- 377 (634)
Q Consensus 307 ~~g~~--~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~---g~- 377 (634)
+.|+. +++..+++++.+ +|..+|+...-.+...|+++++++.++++.+. . .-|...|+.....+.+. |.
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccc
Confidence 55552 556666666653 46778888888888888888888888888876 3 23444555544444333 22
Q ss_pred ---HHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHc----CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 006705 378 ---EDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA----GRVGEALEFIKNM-PFEP-TAAILGSLLGACRV 443 (634)
Q Consensus 378 ---~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 443 (634)
.++...+...++.. .+-+...|+.+...|... ++..+|.+++.+. ...| +......|+..+..
T Consensus 196 ~~~~e~el~y~~~aI~~---~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAILA---NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHHh---CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 24566666566542 244667787777777763 3445677777665 2233 45556666666654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0063 Score=55.98 Aligned_cols=153 Identities=13% Similarity=0.045 Sum_probs=75.3
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh----ccCc
Q 006705 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS----HGGM 377 (634)
Q Consensus 302 i~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~----~~g~ 377 (634)
...|.+.|++++|.+.......-.....| ...+.+..+.+-|.+.+++|.+- -+..|.+.|..++. ..+.
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i----ded~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI----DEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred hHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHhccchh
Confidence 34456666666666665552222222222 23344555566666666666543 24455554544432 2334
Q ss_pred HHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCc-hHHHHHH
Q 006705 378 EDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM--PFEPTAAILGSLLGACRVHYNV-DIGEFVG 454 (634)
Q Consensus 378 ~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~ 454 (634)
+.+|.-+|++|.+ ...|++.+.+-...+....|++++|..+++.. ....+..+...++......|.. +.-.+..
T Consensus 189 ~qdAfyifeE~s~---k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 189 IQDAFYIFEELSE---KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred hhhHHHHHHHHhc---ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 5566666666654 23555555555555555566666666655554 2223344444444333333333 2234455
Q ss_pred HHHhccCCC
Q 006705 455 QRLMEIEPE 463 (634)
Q Consensus 455 ~~~~~~~p~ 463 (634)
.++....|.
T Consensus 266 ~QLk~~~p~ 274 (299)
T KOG3081|consen 266 SQLKLSHPE 274 (299)
T ss_pred HHHHhcCCc
Confidence 555555555
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00013 Score=73.29 Aligned_cols=122 Identities=11% Similarity=0.125 Sum_probs=95.2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHH
Q 006705 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM--PFEPTAAILGSLLGACR 442 (634)
Q Consensus 365 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~ 442 (634)
..+++..+...++++.|..+|+++.+. .|+ ....|+..+...++-.+|.+++.+. ..+.+...+......+.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~----~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER----DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc----CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 345556666777888888888888754 244 4445777777777778888887775 22335555555667788
Q ss_pred hcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 443 VHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 443 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
..++++.|..+++++.+..|++..+|..|+.+|.+.|++++|.-.++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 89999999999999999999999999999999999999999999999886
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0036 Score=62.54 Aligned_cols=177 Identities=15% Similarity=0.107 Sum_probs=130.3
Q ss_pred CHHHHHHHHhhcCC------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 006705 310 SLTYSRRVFDNMSE------RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLA 383 (634)
Q Consensus 310 ~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 383 (634)
++.+++..-+.++. ++...+...+.+.........+..++-+-.+. .-...-|..-+ .+...|.+++|+.
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~aa~YG~A~-~~~~~~~~d~A~~ 327 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR---GGLAAQYGRAL-QTYLAGQYDEALK 327 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc---cchHHHHHHHH-HHHHhcccchHHH
Confidence 45566666666653 34555566666544433333333333222211 11223344333 4456789999999
Q ss_pred HHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHhccC
Q 006705 384 VFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPT-AAILGSLLGACRVHYNVDIGEFVGQRLMEIE 461 (634)
Q Consensus 384 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 461 (634)
.++.+.+. .+-|+..+....+.+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|++.+|...+.....-+
T Consensus 328 ~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~ 404 (484)
T COG4783 328 LLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND 404 (484)
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Confidence 99999863 4556777788899999999999999999997 44566 6677888899999999999999999999999
Q ss_pred CCCCchHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 462 PENAGNYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 462 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
|+++..|..|..+|..+|+..+|.....++..
T Consensus 405 p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 405 PEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred CCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 99999999999999999999999998888753
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00012 Score=62.78 Aligned_cols=97 Identities=15% Similarity=0.197 Sum_probs=76.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHH
Q 006705 398 EIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLY 475 (634)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 475 (634)
+......+...+.+.|++++|.+.++.. .. +.+...|..+...+...|+++.|...++++.+.+|+++..+..++.+|
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3455666777778888888888888776 22 335667777778888888888888888888888888888888889999
Q ss_pred hhcCCcHHHHHHHHHHhhC
Q 006705 476 ASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 476 ~~~g~~~~A~~~~~~m~~~ 494 (634)
...|++++|.+.++...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999988887654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0046 Score=68.27 Aligned_cols=82 Identities=10% Similarity=0.094 Sum_probs=54.0
Q ss_pred hhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcC
Q 006705 261 VTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHG 340 (634)
Q Consensus 261 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g 340 (634)
..+..+..+|.+.|..+++..+++++++.. +.|+.+.|.+...|+.. ++++|.+++.+. +..|...+
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~k 183 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKK 183 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhh
Confidence 355556666666666666666666666666 56667777777777777 777777766543 22356666
Q ss_pred ChHHHHHHHHHHHHc
Q 006705 341 MGREVVELFNLMREE 355 (634)
Q Consensus 341 ~~~~A~~~~~~m~~~ 355 (634)
++.++.++|.++...
T Consensus 184 q~~~~~e~W~k~~~~ 198 (906)
T PRK14720 184 QYVGIEEIWSKLVHY 198 (906)
T ss_pred cchHHHHHHHHHHhc
Confidence 777777777777664
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.002 Score=70.98 Aligned_cols=239 Identities=14% Similarity=0.141 Sum_probs=160.1
Q ss_pred cCCCC-CHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCCCCcchHHHH
Q 006705 52 LGLEM-RFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAM 130 (634)
Q Consensus 52 ~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l 130 (634)
....| +...+..|+..+...+++++|.++.+...+.. +.....|-.+...|...++.+++..+ .+
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~ 89 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NL 89 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hh
Confidence 34445 45568889999989999999999999777653 22222333333366666665555544 34
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCH
Q 006705 131 ISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRI 210 (634)
Q Consensus 131 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 210 (634)
+.......++.-...+...|... .-+...+..+..+|-+.|+.+++..+++++++.. +.|+.+.|.+...|+.. ++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 44444455553334444455442 2355678888999999999999999999999988 77899999999999999 99
Q ss_pred HHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhH-HHHHHHHhcccchHHHHHHHHHHHHc
Q 006705 211 HEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTY-ASVLTALSGLAALGHGKQVHSHVLRF 289 (634)
Q Consensus 211 ~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~i~~~~~~~ 289 (634)
++|++++.+. +..|...+++.++.+++.++... .|+...+ .-++ +.+...
T Consensus 166 ~KA~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~----------------~ki~~~ 216 (906)
T PRK14720 166 EKAITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIE----------------RKVLGH 216 (906)
T ss_pred HHHHHHHHHH-----------HHHHHhhhcchHHHHHHHHHHhc--CcccchHHHHHH----------------HHHHhh
Confidence 9999987654 33377788999999999999875 3443332 2222 222221
Q ss_pred -CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHH
Q 006705 290 -EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYS 337 (634)
Q Consensus 290 -~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~ 337 (634)
|...-+.++-.|-..|-+..+++++..+|+.+.+ .|.....-++..|.
T Consensus 217 ~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 217 REFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 2233344555666677777888888888887764 34455555666655
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0031 Score=57.93 Aligned_cols=168 Identities=9% Similarity=0.061 Sum_probs=112.1
Q ss_pred HHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-C
Q 006705 247 LFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER-T 325 (634)
Q Consensus 247 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-~ 325 (634)
+.+.+.......+......-...|...+++++|.+...... +......=+..+.|..+.+-|.+.+++|.+- +
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ide 168 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDE 168 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch
Confidence 44444444444443444444556777788888877765411 1222222244566778888999999998874 4
Q ss_pred hhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHH
Q 006705 326 VISWNAMLVGYSK----HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEH 401 (634)
Q Consensus 326 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~ 401 (634)
..+.+.|.+++.+ .+...+|.-+|++|-++ ..|+..+.+....++...|++++|..+++....+. ..++++
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd---~~dpet 243 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD---AKDPET 243 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc---CCCHHH
Confidence 4566666666554 34688899999999874 78999999999999999999999999999998753 345666
Q ss_pred HHHHHHHHHHcCCHHHHH-HHHHhC
Q 006705 402 YGCVVDMLGRAGRVGEAL-EFIKNM 425 (634)
Q Consensus 402 ~~~li~~~~~~g~~~~A~-~~~~~m 425 (634)
...+|..-...|...++. +.+.+.
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHH
Confidence 666666655666554433 344444
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0014 Score=71.46 Aligned_cols=143 Identities=14% Similarity=0.063 Sum_probs=118.1
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH-HHH
Q 006705 290 EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE--R-TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS-VTY 365 (634)
Q Consensus 290 ~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~-~t~ 365 (634)
..+.++..+-.|.......|.+++|..+++...+ | +...+..++..+.+.+++++|+..+++.... .|+. ...
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~ 157 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREI 157 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHH
Confidence 3466788888999999999999999999999874 4 5667888999999999999999999999875 5666 555
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 006705 366 LAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM--PFEPTAAILGSLL 438 (634)
Q Consensus 366 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll 438 (634)
..+..++.+.|.+++|..+|+++... .+-+...+..+...+-+.|+.++|...|++. ...|....|+.++
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQ---HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 66667789999999999999999963 2345788999999999999999999999987 2345555555554
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.2e-05 Score=47.43 Aligned_cols=31 Identities=29% Similarity=0.444 Sum_probs=26.4
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 006705 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155 (634)
Q Consensus 125 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 155 (634)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788899999999999999999998888764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.79 E-value=2.7e-05 Score=47.03 Aligned_cols=31 Identities=39% Similarity=0.777 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 006705 226 VSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256 (634)
Q Consensus 226 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 256 (634)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00084 Score=57.45 Aligned_cols=100 Identities=11% Similarity=-0.058 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 006705 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGA 440 (634)
Q Consensus 363 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~ 440 (634)
.....+...+...|++++|...++.+... -+.+...+..+...|.+.|++++|...+++. .. +.+...|..+...
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 94 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAY---DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 34455556667777777777777777653 2345677777777777777888877777765 22 3345566666677
Q ss_pred HHhcCCchHHHHHHHHHhccCCCCC
Q 006705 441 CRVHYNVDIGEFVGQRLMEIEPENA 465 (634)
Q Consensus 441 ~~~~~~~~~a~~~~~~~~~~~p~~~ 465 (634)
+...|+.+.|...++++.+..|++.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~p~~~ 119 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEICGENP 119 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHhccccc
Confidence 7778888888888888888887754
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0016 Score=56.53 Aligned_cols=125 Identities=15% Similarity=0.198 Sum_probs=64.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCC--hHHH
Q 006705 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPD---SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE--IEHY 402 (634)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~--~~~~ 402 (634)
.|..++..+. .++...+...++.+.+. .+.+ ......+...+...|++++|...|+.+... .-.|. ....
T Consensus 14 ~y~~~~~~~~-~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~--~~d~~l~~~a~ 88 (145)
T PF09976_consen 14 LYEQALQALQ-AGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN--APDPELKPLAR 88 (145)
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 4444555443 55566666666666554 1111 122223334455566666666666666643 21111 1123
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcH
Q 006705 403 GCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482 (634)
Q Consensus 403 ~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 482 (634)
-.|...+...|++++|+..++..+. .+-.+..+..++++|.+.|+++
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~~~~---------------------------------~~~~~~~~~~~Gdi~~~~g~~~ 135 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQIPD---------------------------------EAFKALAAELLGDIYLAQGDYD 135 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhccC---------------------------------cchHHHHHHHHHHHHHHCCCHH
Confidence 3345555556666666666554321 1112345556777777777777
Q ss_pred HHHHHHHH
Q 006705 483 DVTRVREL 490 (634)
Q Consensus 483 ~A~~~~~~ 490 (634)
+|...|+.
T Consensus 136 ~A~~~y~~ 143 (145)
T PF09976_consen 136 EARAAYQK 143 (145)
T ss_pred HHHHHHHH
Confidence 77777764
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00054 Score=53.85 Aligned_cols=92 Identities=22% Similarity=0.257 Sum_probs=71.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcC
Q 006705 402 YGCVVDMLGRAGRVGEALEFIKNM-PFEP-TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479 (634)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 479 (634)
+..+...+...|++++|...+++. ...| +...|..+...+...++++.|...++......|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455667777788888888888775 2233 34566677777788888888888888888888887778888888888889
Q ss_pred CcHHHHHHHHHHhh
Q 006705 480 RWEDVTRVRELMKE 493 (634)
Q Consensus 480 ~~~~A~~~~~~m~~ 493 (634)
++++|.+.+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999888887754
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00088 Score=55.71 Aligned_cols=30 Identities=10% Similarity=-0.069 Sum_probs=12.9
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhccCCCC
Q 006705 435 GSLLGACRVHYNVDIGEFVGQRLMEIEPEN 464 (634)
Q Consensus 435 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 464 (634)
..+..++...|+.+.|...++++.+..|++
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 333334444444444444444444444443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0086 Score=54.69 Aligned_cols=153 Identities=14% Similarity=0.129 Sum_probs=75.3
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHH-HHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcC
Q 006705 335 GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS-GCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAG 413 (634)
Q Consensus 335 ~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 413 (634)
+....|+.+.|...++++... + |.+.-...+=. -+-..|.+++|.++++.+.++ . +.|..++..=+-+.-..|
T Consensus 61 AAld~~~~~lAq~C~~~L~~~--f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--d-pt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 61 AALDTGRDDLAQKCINQLRDR--F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--D-PTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHhcchHHHHHHHHHHHHh--C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--C-cchhHHHHHHHHHHHHcC
Confidence 334445555555555555554 2 33321111111 123345555666666655543 1 334444444444444455
Q ss_pred CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcC---CcHHHHHHH
Q 006705 414 RVGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG---RWEDVTRVR 488 (634)
Q Consensus 414 ~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~ 488 (634)
+.-+|++-+.+. .+..|...|.-+-..|...|+++.|...++++.=+.|.++..+..+++.+.-.| +++-|.+.+
T Consensus 135 K~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy 214 (289)
T KOG3060|consen 135 KNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYY 214 (289)
T ss_pred CcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 544555444433 233455566666666666666666666666666666665555555555554443 344455555
Q ss_pred HHHhh
Q 006705 489 ELMKE 493 (634)
Q Consensus 489 ~~m~~ 493 (634)
.+..+
T Consensus 215 ~~alk 219 (289)
T KOG3060|consen 215 ERALK 219 (289)
T ss_pred HHHHH
Confidence 54443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.16 Score=51.83 Aligned_cols=74 Identities=11% Similarity=0.178 Sum_probs=35.2
Q ss_pred CHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC--CCcchHHHHHH
Q 006705 57 RFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE--RNVVSWTAMIS 132 (634)
Q Consensus 57 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~ 132 (634)
|..+|..|++-+... ..++++..++++... ++.....|..-|..-.+..+++..+++|.+... -++..|..-|+
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 444555555544333 455555555555432 233344444555555555555555555554332 24444554443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0063 Score=52.73 Aligned_cols=124 Identities=13% Similarity=0.069 Sum_probs=93.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh------hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH--HHHH
Q 006705 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVI------SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS--VTYL 366 (634)
Q Consensus 295 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~--~t~~ 366 (634)
...|..++..+. .++...+...++.+.+.... ..-.+...+...|++++|...|+..... ...|+. ....
T Consensus 12 ~~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l 89 (145)
T PF09976_consen 12 SALYEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHH
Confidence 346667777664 88999998888888753222 2333456788999999999999999987 433332 3455
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q 006705 367 AVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKN 424 (634)
Q Consensus 367 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 424 (634)
.+...+...|++++|+..++.... -......+..+.+.|.+.|+.++|...|++
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~----~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPD----EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccC----cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 567788999999999999977543 234566778899999999999999999875
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.016 Score=59.62 Aligned_cols=203 Identities=15% Similarity=0.192 Sum_probs=108.9
Q ss_pred HHHHHHHHhccCCcHHHHHH--HHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcC
Q 006705 162 FATVLTSCAGAFGFELGKQI--HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239 (634)
Q Consensus 162 ~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g 239 (634)
++..=.+|.+..+...-+-+ ++.+.+.|-.|+... +...++-.|.+.+|.++|.+ +|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G 659 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SG 659 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cC
Confidence 44444555555554433332 345666776677654 45566678889998888754 55
Q ss_pred ChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 006705 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFD 319 (634)
Q Consensus 240 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 319 (634)
....|+++|..|+-- -..+-+...|..++-+.+.+.-.+ +..++.--.+-..++...|+.++|..+
T Consensus 660 ~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~--WAr~~kePkaAAEmLiSaGe~~KAi~i-- 725 (1081)
T KOG1538|consen 660 HENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRAD--WARNIKEPKAAAEMLISAGEHVKAIEI-- 725 (1081)
T ss_pred chhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHH--HhhhcCCcHHHHHHhhcccchhhhhhh--
Confidence 556666666655421 111222333333333333221111 011111112334555666777766554
Q ss_pred hcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCCh
Q 006705 320 NMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEI 399 (634)
Q Consensus 320 ~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 399 (634)
...+|-.+-++++-+++-.. +..+...+..-+-+...+..|-++|..|-..
T Consensus 726 ----------------~~d~gW~d~lidI~rkld~~-----ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~-------- 776 (1081)
T KOG1538|consen 726 ----------------CGDHGWVDMLIDIARKLDKA-----EREPLLLCATYLKKLDSPGLAAEIFLKMGDL-------- 776 (1081)
T ss_pred ----------------hhcccHHHHHHHHHhhcchh-----hhhHHHHHHHHHhhccccchHHHHHHHhccH--------
Confidence 23455555555554444322 3445555555555666677777888777532
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCH
Q 006705 400 EHYGCVVDMLGRAGRVGEALEFIKNMP-FEPTA 431 (634)
Q Consensus 400 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~ 431 (634)
..++++....+++++|..+-++.| ..||+
T Consensus 777 ---ksiVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 777 ---KSLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred ---HHHhhheeecccchHhHhhhhhCccccccc
Confidence 346777788888888888888774 34443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00013 Score=56.40 Aligned_cols=53 Identities=15% Similarity=0.202 Sum_probs=28.5
Q ss_pred HHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHH
Q 006705 437 LLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVREL 490 (634)
Q Consensus 437 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 490 (634)
+..++...|+++.|..++++ .+.+|.++.....++.+|.+.|++++|++++++
T Consensus 31 la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 33444444444444444433 333343344555667777788888888877764
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0021 Score=53.37 Aligned_cols=96 Identities=13% Similarity=0.031 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC---CchHHHH
Q 006705 400 EHYGCVVDMLGRAGRVGEALEFIKNM-PFEPT----AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN---AGNYVIL 471 (634)
Q Consensus 400 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l 471 (634)
.++..++..+.+.|++++|.+.|.++ ...|+ ...+..+..++...|+++.|...++.+....|++ +..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 35566677777888888888888776 22232 2355567778888888888888888888887774 4568889
Q ss_pred HHHHhhcCCcHHHHHHHHHHhhCC
Q 006705 472 SNLYASAGRWEDVTRVRELMKEKA 495 (634)
Q Consensus 472 ~~~~~~~g~~~~A~~~~~~m~~~~ 495 (634)
+.+|.+.|++++|.+.++.+.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999998763
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0048 Score=60.00 Aligned_cols=143 Identities=14% Similarity=0.166 Sum_probs=101.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHhhhccCCccCChHHHHHH
Q 006705 327 ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG-CSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405 (634)
Q Consensus 327 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 405 (634)
.+|..++...-+.+..+.|..+|.+..+.. ..+...|...... +...++.+.|..+|+...+. +..+...|...
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~---f~~~~~~~~~Y 76 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK---FPSDPDFWLEY 76 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH---HTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---CCCCHHHHHHH
Confidence 467788888888888889999998887642 2233334333333 33456777899999999874 46678889999
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHH
Q 006705 406 VDMLGRAGRVGEALEFIKNM-PFEPTA----AILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLY 475 (634)
Q Consensus 406 i~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 475 (634)
++.+.+.|+.+.|..+|++. ..-|.. ..|...+..-...|+.+....+.+++.+.-|++ .....+++-|
T Consensus 77 ~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~-~~~~~f~~ry 150 (280)
T PF05843_consen 77 LDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED-NSLELFSDRY 150 (280)
T ss_dssp HHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS--HHHHHHCCT
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh-hHHHHHHHHh
Confidence 99999999999999999886 223333 489999999999999999999998888888774 3333344433
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.016 Score=53.09 Aligned_cols=152 Identities=15% Similarity=0.100 Sum_probs=118.6
Q ss_pred cCChHHHHHHHHHHHHcC--C-CCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCC
Q 006705 339 HGMGREVVELFNLMREEN--K-VKPDSV-TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414 (634)
Q Consensus 339 ~g~~~~A~~~~~~m~~~~--g-~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 414 (634)
..+.++.++++.+|.... | ..||.. .|-.+.-|....|..+.|...++.+... ++-+..+-..-.-.+-..|+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~---fp~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR---FPGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh---CCCChhHHHHHHHHHHHhhc
Confidence 346788888888776531 3 556663 4556666777889999999999998874 33333333333344567899
Q ss_pred HHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 415 VGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 415 ~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
+++|+++++.. ..+.|.+++.--+......|..-+|.+.....++..|.|..+|.-|.++|...|.++.|.-.++++.
T Consensus 102 ~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 99999999997 3345677787777888888988899999999999999999999999999999999999999999996
Q ss_pred h
Q 006705 493 E 493 (634)
Q Consensus 493 ~ 493 (634)
-
T Consensus 182 l 182 (289)
T KOG3060|consen 182 L 182 (289)
T ss_pred H
Confidence 4
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0032 Score=49.29 Aligned_cols=91 Identities=16% Similarity=0.111 Sum_probs=48.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHH
Q 006705 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408 (634)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~ 408 (634)
|..+...+...|++++|+..|++..+. .+.+...+..+...+...+++++|.+.++...+. .+.+...+..+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~ 77 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL---DPDNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCcchhHHHHHHHH
Confidence 344455555566666666666665543 1222344455555555556666666666655542 12233455555555
Q ss_pred HHHcCCHHHHHHHHHh
Q 006705 409 LGRAGRVGEALEFIKN 424 (634)
Q Consensus 409 ~~~~g~~~~A~~~~~~ 424 (634)
+...|+.++|...+.+
T Consensus 78 ~~~~~~~~~a~~~~~~ 93 (100)
T cd00189 78 YYKLGKYEEALEAYEK 93 (100)
T ss_pred HHHHHhHHHHHHHHHH
Confidence 5555666655555544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0085 Score=58.54 Aligned_cols=267 Identities=9% Similarity=-0.016 Sum_probs=161.6
Q ss_pred HHHHHHhcCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccCh-hhHHHHHHHHhcccc
Q 006705 200 LLDMYAKAGRIHEARGVFECLPE---RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNY-VTYASVLTALSGLAA 275 (634)
Q Consensus 200 li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~ 275 (634)
..+.+.+..++.+|++.+....+ .++.-|..-...+...|++++|+--.+.-.+. +|.. .+..-.-.++...++
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSD 132 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHH
Confidence 33455666677777766654432 34555666666677777777776655544432 2222 233333344444444
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhhHHHH-HHHHHhcCChHHHHHHH
Q 006705 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE-----RTVISWNAM-LVGYSKHGMGREVVELF 349 (634)
Q Consensus 276 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~~~~~~~l-i~~~~~~g~~~~A~~~~ 349 (634)
..+|.+.+. +...+ ....|...++.... |.-.+|-.+ ...+.-.|++++|.+.-
T Consensus 133 ~i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea 192 (486)
T KOG0550|consen 133 LIEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA 192 (486)
T ss_pred HHHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence 444444443 00000 11112222222221 222334333 23566788888888877
Q ss_pred HHHHHcCCCCCCHHHHHHHHH--HHhccCcHHHHHHHHHHhhhccCCccCChH-------------HHHHHHHHHHHcCC
Q 006705 350 NLMREENKVKPDSVTYLAVLS--GCSHGGMEDRGLAVFHEIVDCKDGFEPEIE-------------HYGCVVDMLGRAGR 414 (634)
Q Consensus 350 ~~m~~~~g~~pd~~t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~-------------~~~~li~~~~~~g~ 414 (634)
....+. .++ ..+..+++ ++--.++.+.|...|++.+ .+.|+.. .+..=.+...+.|+
T Consensus 193 ~~ilkl---d~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal----~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~ 264 (486)
T KOG0550|consen 193 IDILKL---DAT-NAEALYVRGLCLYYNDNADKAINHFQQAL----RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGN 264 (486)
T ss_pred HHHHhc---ccc-hhHHHHhcccccccccchHHHHHHHhhhh----ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccc
Confidence 666654 111 12222333 2445677888888888877 3455422 22233455678899
Q ss_pred HHHHHHHHHhC-CCC-----CCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHH
Q 006705 415 VGEALEFIKNM-PFE-----PTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVR 488 (634)
Q Consensus 415 ~~~A~~~~~~m-~~~-----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 488 (634)
+.+|.+.+.+. .+. |+...|.....+..+.|+.++|..-.+.+.+++|.-...|..-++++...++|++|.+-+
T Consensus 265 y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~ 344 (486)
T KOG0550|consen 265 YRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDY 344 (486)
T ss_pred hhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999886 333 445555556677788999999999999999999998888888999999999999999999
Q ss_pred HHHhhCCC
Q 006705 489 ELMKEKAV 496 (634)
Q Consensus 489 ~~m~~~~~ 496 (634)
+...+...
T Consensus 345 ~~a~q~~~ 352 (486)
T KOG0550|consen 345 EKAMQLEK 352 (486)
T ss_pred HHHHhhcc
Confidence 98866543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00061 Score=50.33 Aligned_cols=64 Identities=19% Similarity=0.136 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcC-CcHHHHHHHHHHhh
Q 006705 430 TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG-RWEDVTRVRELMKE 493 (634)
Q Consensus 430 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 493 (634)
+..+|..+...+...|++++|...++++++++|+++..|..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45678888888999999999999999999999999999999999999999 79999999888754
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.24 Score=48.88 Aligned_cols=113 Identities=12% Similarity=0.081 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006705 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGAC 441 (634)
Q Consensus 362 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 441 (634)
..+.+..+.-|...|....|.++-.+. . -|+..-|-..+.+|+..++|++-.++... +..++-|..++.+|
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~F-----k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEF-----K-VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEAC 247 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHc-----C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHH
Confidence 345566677777888888877764443 3 37888999999999999999998887654 33457788999999
Q ss_pred HhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 442 RVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 442 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
...|+..+|..+..+ -.+..-+.+|.++|.|.+|.+.--+.+
T Consensus 248 ~~~~~~~eA~~yI~k---------~~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 248 LKYGNKKEASKYIPK---------IPDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HHCCCHHHHHHHHHh---------CChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 999999998888776 122567889999999999988755543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.33 Score=49.59 Aligned_cols=161 Identities=9% Similarity=0.054 Sum_probs=119.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHH
Q 006705 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKP-DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404 (634)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 404 (634)
..+|-..+..--+..-...|..+|.+..+. +..+ +.....+++.-++ .++.+.|.++|+.-.+.+ ..++.--..
T Consensus 366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf---~d~p~yv~~ 440 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF---GDSPEYVLK 440 (656)
T ss_pred ceehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc---CCChHHHHH
Confidence 346777777777777788999999999998 7777 5566777776655 578899999999887754 445555677
Q ss_pred HHHHHHHcCCHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC----CchHHHHHHHH
Q 006705 405 VVDMLGRAGRVGEALEFIKNMP---FEPT--AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN----AGNYVILSNLY 475 (634)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~m~---~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~ 475 (634)
.++-+...++-..|..+|++.- ..|| ...|..+|.--..-|+......+-++....-|.+ ...-..+++.|
T Consensus 441 YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY 520 (656)
T KOG1914|consen 441 YLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRY 520 (656)
T ss_pred HHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHH
Confidence 8888999999999999999871 2333 4689999999999999998888877766555521 12345677778
Q ss_pred hhcCCcHHHHHHHHHH
Q 006705 476 ASAGRWEDVTRVRELM 491 (634)
Q Consensus 476 ~~~g~~~~A~~~~~~m 491 (634)
.-.+.+..-..-++.|
T Consensus 521 ~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 521 GILDLYPCSLDELKFL 536 (656)
T ss_pred hhcccccccHHHHHhh
Confidence 7777766555555555
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.016 Score=61.31 Aligned_cols=61 Identities=18% Similarity=0.108 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 432 AILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 432 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
..+.++.-.....|++++|...++++.+++|. ...|..++.+|...|+.++|.+.+++...
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33444433333445555555555555555553 44555555555555555555555555443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0021 Score=64.91 Aligned_cols=104 Identities=11% Similarity=0.036 Sum_probs=84.9
Q ss_pred HHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 006705 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEP-TAAILGSLLGACRVHYN 446 (634)
Q Consensus 369 l~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~ 446 (634)
...+...|++++|...|+.+++. -+.+...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 45567789999999999999964 2346778888999999999999999999887 3334 56678888899999999
Q ss_pred chHHHHHHHHHhccCCCCCchHHHHHHHH
Q 006705 447 VDIGEFVGQRLMEIEPENAGNYVILSNLY 475 (634)
Q Consensus 447 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 475 (634)
+++|...++++++++|+++.....+..+.
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999999877666554443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0044 Score=55.54 Aligned_cols=95 Identities=15% Similarity=0.081 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHH
Q 006705 399 IEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPT----AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSN 473 (634)
Q Consensus 399 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 473 (634)
...+..+...|.+.|++++|...|++. ...|+ ...|..+...+...|+++.|...++++++..|.+...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 334555666666667777776666654 11121 3456666677777777777777777777777777777777777
Q ss_pred HHhhcCC--------------cHHHHHHHHHHhh
Q 006705 474 LYASAGR--------------WEDVTRVRELMKE 493 (634)
Q Consensus 474 ~~~~~g~--------------~~~A~~~~~~m~~ 493 (634)
+|...|+ +++|.++++....
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 7777665 4555555555543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.011 Score=52.97 Aligned_cols=131 Identities=14% Similarity=0.171 Sum_probs=87.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHH
Q 006705 325 TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD--SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHY 402 (634)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~ 402 (634)
....+..+...+...|++++|+..|++..+. ...|+ ...+..+...+.+.|++++|...++...+.. +.+...+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~ 109 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKL-EEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN---PKQPSAL 109 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-hhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cccHHHH
Confidence 4456677777788888888888888888765 32222 3567777777888888888888888887531 2245566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCC
Q 006705 403 GCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480 (634)
Q Consensus 403 ~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 480 (634)
..+...|...|+...+..-++.. ...++.|...++++.+.+|++ |..++..+...|+
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 66777777777665554332221 012566788888888888875 5566666665554
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0043 Score=55.35 Aligned_cols=94 Identities=14% Similarity=-0.082 Sum_probs=71.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHH
Q 006705 398 EIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPT----AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILS 472 (634)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 472 (634)
....|..++..+...|++++|...|++. ...|+ ..+|..+...+...|+.++|...+++++++.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 4556677777777888888888888876 22222 346788888888899999999999999998888888888888
Q ss_pred HHHh-------hcCCcHHHHHHHHHH
Q 006705 473 NLYA-------SAGRWEDVTRVRELM 491 (634)
Q Consensus 473 ~~~~-------~~g~~~~A~~~~~~m 491 (634)
.+|. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8887 777877666665544
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0085 Score=47.55 Aligned_cols=81 Identities=16% Similarity=0.207 Sum_probs=67.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHhccC--------cHHHHHHHHHHhhhccCCccCC
Q 006705 328 SWNAMLVGYSKHGMGREVVELFNLMREENKV-KPDSVTYLAVLSGCSHGG--------MEDRGLAVFHEIVDCKDGFEPE 398 (634)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~-~pd~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~~p~ 398 (634)
+-...|..+...+++.....+|+.+++. |+ .|+..+|+.+|.+..+.. .+-+.+.+|+.|... +++|+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN-~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~--~lKP~ 103 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRN-GITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN--KLKPN 103 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhc-CCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh--ccCCc
Confidence 3445666777779999999999999999 89 999999999999876532 345678899999986 89999
Q ss_pred hHHHHHHHHHHHH
Q 006705 399 IEHYGCVVDMLGR 411 (634)
Q Consensus 399 ~~~~~~li~~~~~ 411 (634)
.++|+.++..+.+
T Consensus 104 ~etYnivl~~Llk 116 (120)
T PF08579_consen 104 DETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0012 Score=48.11 Aligned_cols=58 Identities=17% Similarity=0.217 Sum_probs=45.8
Q ss_pred HHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 437 LLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 437 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
+...+...|++++|...++++++..|+++..+..++.++...|++++|...++.+.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456677788888888888888888888888888888888888888888888887653
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.15 Score=48.40 Aligned_cols=59 Identities=7% Similarity=-0.045 Sum_probs=43.2
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006705 367 AVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425 (634)
Q Consensus 367 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 425 (634)
.+..-|.+.|.+..|..-++.+.+.+++.+...+....++.+|.+.|..++|.+....+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 34455777788888888888888777666666777777888888888888877765543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0064 Score=61.59 Aligned_cols=118 Identities=10% Similarity=0.059 Sum_probs=90.0
Q ss_pred CCChhHHHHHHHHHHcCCChHHHHHHHhhcCC-C-----CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHH
Q 006705 90 RPPVYLRTRLIVFYNKCECLSDARKMFDEMRE-R-----NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFA 163 (634)
Q Consensus 90 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 163 (634)
+.+......+++......+++.+..++-+... | -..|..++|+.|.+.|..++++.+++.=...|+-||.+|++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 33444555566666666677778777766543 2 12345689999999999999999999888889999999999
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Q 006705 164 TVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA 207 (634)
Q Consensus 164 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 207 (634)
.+|..+.+.|++..|.++...|...+...+..++..-+.++.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999998888777666667766556666666
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.34 Score=47.31 Aligned_cols=97 Identities=9% Similarity=0.080 Sum_probs=61.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----CCHH-HHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCC--hH
Q 006705 329 WNAMLVGYSKHGMGREVVELFNLMREENKVK-----PDSV-TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE--IE 400 (634)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~-----pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~--~~ 400 (634)
+..+...+.+.|++++|+++|++.... ... .+.. .|...+-++...|++..|...++......+++..+ ..
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~-~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKK-CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHT-CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 445677788899999999999888764 222 1221 23333335566789999999999887543344333 44
Q ss_pred HHHHHHHHHHH--cCCHHHHHHHHHhCC
Q 006705 401 HYGCVVDMLGR--AGRVGEALEFIKNMP 426 (634)
Q Consensus 401 ~~~~li~~~~~--~g~~~~A~~~~~~m~ 426 (634)
....|+.++-. ...+++|..-|+.+.
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 55667777753 456777888888874
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.58 Score=49.78 Aligned_cols=341 Identities=13% Similarity=0.082 Sum_probs=187.8
Q ss_pred HHHcCCCCCHhhHH-----HHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCC---ChHHHHHHHhhcC
Q 006705 49 MATLGLEMRFEEYD-----TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE---CLSDARKMFDEMR 120 (634)
Q Consensus 49 m~~~g~~p~~~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~ 120 (634)
+..-|+..+..-|. .++.-+...+.+..|.++-..+-..-... ..++.....-+.+.. +-+-+.++-+++.
T Consensus 423 ~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls 501 (829)
T KOG2280|consen 423 DVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLS 501 (829)
T ss_pred ccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhc
Confidence 34456665555553 34555666777888888877764322122 566777777776653 3333444444555
Q ss_pred C--CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCC----CChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCch
Q 006705 121 E--RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE----PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHI 194 (634)
Q Consensus 121 ~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 194 (634)
. ..-++|..+.+-.-..|+++-|..+++.=...+-+ .+..-+...+.-+...|+.+...+++-++.+.- +.
T Consensus 502 ~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~ 578 (829)
T KOG2280|consen 502 AKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NR 578 (829)
T ss_pred ccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HH
Confidence 5 45678888888888889999888887643222110 122334555666666677666666655554321 11
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHccCCC-CChhhHHHHHHHHHhcCChHHHHHHHH--HH----hhcCCccChhhHHHHH
Q 006705 195 YVGSSLLDMYAKAGRIHEARGVFECLPE-RDVVSCTAIISGYAQLGLDEEAIELFR--KL----QVEGMISNYVTYASVL 267 (634)
Q Consensus 195 ~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~--~m----~~~g~~p~~~t~~~ll 267 (634)
..+. ....+...|..+|.+... .|..+ +-..|-+ ++-.+++.-|. .. ...|..|+ ....-
T Consensus 579 s~l~------~~l~~~p~a~~lY~~~~r~~~~~~---l~d~y~q-~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a 645 (829)
T KOG2280|consen 579 SSLF------MTLRNQPLALSLYRQFMRHQDRAT---LYDFYNQ-DDNHQALASFHLQASYAAETIEGRIPA---LKTAA 645 (829)
T ss_pred HHHH------HHHHhchhhhHHHHHHHHhhchhh---hhhhhhc-ccchhhhhhhhhhhhhhhhhhcccchh---HHHHH
Confidence 1111 111223334444443322 11111 1111222 22222222111 10 01222333 23334
Q ss_pred HHHhcccchHHHHHHH----------HHHH-HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 006705 268 TALSGLAALGHGKQVH----------SHVL-RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGY 336 (634)
Q Consensus 268 ~~~~~~~~~~~a~~i~----------~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~ 336 (634)
++|++........+.. +.+. +.|....--+.+--+.-+...|+..+|.++-.+.+-||-..|---+.++
T Consensus 646 ~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aL 725 (829)
T KOG2280|consen 646 NAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTAL 725 (829)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHH
Confidence 4454444322111111 1111 1122222223333444566779999999999999888888888889999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHH
Q 006705 337 SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416 (634)
Q Consensus 337 ~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 416 (634)
+..+++++-+++-+.++ .+.-|.....+|.+.|+.++|.+++.... |.. -.+.+|.+.|++.
T Consensus 726 a~~~kweeLekfAkskk-------sPIGy~PFVe~c~~~~n~~EA~KYiprv~----~l~-------ekv~ay~~~~~~~ 787 (829)
T KOG2280|consen 726 ADIKKWEELEKFAKSKK-------SPIGYLPFVEACLKQGNKDEAKKYIPRVG----GLQ-------EKVKAYLRVGDVK 787 (829)
T ss_pred HhhhhHHHHHHHHhccC-------CCCCchhHHHHHHhcccHHHHhhhhhccC----ChH-------HHHHHHHHhccHH
Confidence 99999887766655442 24557778889999999999998877654 222 4688899999999
Q ss_pred HHHHHHHh
Q 006705 417 EALEFIKN 424 (634)
Q Consensus 417 ~A~~~~~~ 424 (634)
+|.++--+
T Consensus 788 eAad~A~~ 795 (829)
T KOG2280|consen 788 EAADLAAE 795 (829)
T ss_pred HHHHHHHH
Confidence 98876544
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.029 Score=54.80 Aligned_cols=99 Identities=15% Similarity=0.191 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCc-----cChh-hHHHHHHHHhcccchHHHHHHHHHHHHcC--CCC--chhH
Q 006705 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMI-----SNYV-TYASVLTALSGLAALGHGKQVHSHVLRFE--IPS--YVVL 297 (634)
Q Consensus 228 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~-t~~~ll~~~~~~~~~~~a~~i~~~~~~~~--~~~--~~~~ 297 (634)
+..+...+.+.|++++|+++|++....-.. ++.. .|...+-++...|+...|...++...... +.. ...+
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 445556677777777777777776543221 1111 12223334445566666666666655432 222 1334
Q ss_pred HHHHHHHHHhc--CCHHHHHHHHhhcCCCCh
Q 006705 298 QNSLIDMYSKC--GSLTYSRRVFDNMSERTV 326 (634)
Q Consensus 298 ~~~li~~~~~~--g~~~~A~~~f~~m~~~~~ 326 (634)
...|+.+|-.. ..++.|..-|+.+.+-|.
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 45555555432 235556666666655443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0096 Score=60.15 Aligned_cols=105 Identities=10% Similarity=-0.004 Sum_probs=83.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHH
Q 006705 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411 (634)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 411 (634)
....+...|++++|+++|++..+. -+-+...|..+..++...|++++|...++.+.+.. +.+...|..+..+|..
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~---P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELD---PSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHH
Confidence 345677889999999999999986 33456778888889999999999999999998642 3367789999999999
Q ss_pred cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 006705 412 AGRVGEALEFIKNM-PFEPTAAILGSLLGAC 441 (634)
Q Consensus 412 ~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~ 441 (634)
.|++++|+..|++. ...|+.......+.-|
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999986 4456655544444333
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0027 Score=49.02 Aligned_cols=80 Identities=13% Similarity=0.246 Sum_probs=52.3
Q ss_pred cCChHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccC-ChHHHHHHHHHHHHcCCHH
Q 006705 339 HGMGREVVELFNLMREENKV-KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP-EIEHYGCVVDMLGRAGRVG 416 (634)
Q Consensus 339 ~g~~~~A~~~~~~m~~~~g~-~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~ 416 (634)
.|++++|+.+|+++.+. .. .|+...+..+..++.+.|++++|..+++. . ...| +....-.+..+|.+.|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~-~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~----~~~~~~~~~~~l~a~~~~~l~~y~ 75 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLEL-DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L----KLDPSNPDIHYLLARCLLKLGKYE 75 (84)
T ss_dssp TT-HHHHHHHHHHHHHH-HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H----THHHCHHHHHHHHHHHHHHTT-HH
T ss_pred CccHHHHHHHHHHHHHH-CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h----CCCCCCHHHHHHHHHHHHHhCCHH
Confidence 57788888888888776 22 12344455577778888888888888877 2 2233 2344445577778888888
Q ss_pred HHHHHHHh
Q 006705 417 EALEFIKN 424 (634)
Q Consensus 417 ~A~~~~~~ 424 (634)
+|++.+++
T Consensus 76 eAi~~l~~ 83 (84)
T PF12895_consen 76 EAIKALEK 83 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 88887764
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.01 Score=47.16 Aligned_cols=79 Identities=15% Similarity=0.123 Sum_probs=65.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCC-ccChhhHHHHHHHHhccc--------chHHHHHHHHHHHHcCCCCchhHHH
Q 006705 229 TAIISGYAQLGLDEEAIELFRKLQVEGM-ISNYVTYASVLTALSGLA--------ALGHGKQVHSHVLRFEIPSYVVLQN 299 (634)
Q Consensus 229 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~i~~~~~~~~~~~~~~~~~ 299 (634)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++.....++..++..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456667777999999999999999999 999999999999887653 3445667888888888999999999
Q ss_pred HHHHHHHh
Q 006705 300 SLIDMYSK 307 (634)
Q Consensus 300 ~li~~~~~ 307 (634)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88887765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.011 Score=59.91 Aligned_cols=117 Identities=10% Similarity=0.029 Sum_probs=58.3
Q ss_pred CCChhhHHHHHHHHhccCCcHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC----CChhhHH
Q 006705 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKS--NFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE----RDVVSCT 229 (634)
Q Consensus 156 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~~~~~ 229 (634)
+.+...+..++..+....+++.+..++-..... ....-..+..++|+.|.+.|..+.+..+++.=.. +|..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 334445555555555555555555555444433 1111222334555555555555555555543322 4555555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhc
Q 006705 230 AIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272 (634)
Q Consensus 230 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 272 (634)
.||..+.+.|++..|.++...|...+...+..|+...+.+|.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 5555555555555555555555555545555555544444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.47 Score=47.48 Aligned_cols=422 Identities=13% Similarity=0.086 Sum_probs=229.2
Q ss_pred CCCccchhhhcccchhhhhcCCCCCC-----CChhhHHHhhhcCcHH--HHHHHHHHcCCCCCHhhHHHHHHH--HhccC
Q 006705 2 RRPKKQSRAFSSLTFTQQQLTVPSFP-----PNPQNLKTLCSNGQLT--KALIEMATLGLEMRFEEYDTLLNA--CVNQR 72 (634)
Q Consensus 2 ~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~--~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~ 72 (634)
+..++.+++-..|.+.-+......+- --.++|++|..+.--. ..+....+ ..| ...|..+..+ +-+.+
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~--~~~-~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQ--QFG-KSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHH--hcC-CchHHHHHHHHHHHHhh
Confidence 44566777777777754333222111 1246777776654222 22333332 233 3445555554 34677
Q ss_pred CchHHHHHHHHHHHh--CCC------------CChhHHHHHHHHHHcCCChHHHHHHHhhcCC--------CCcchHHHH
Q 006705 73 TLRGGQRVHAHMIKT--CYR------------PPVYLRTRLIVFYNKCECLSDARKMFDEMRE--------RNVVSWTAM 130 (634)
Q Consensus 73 ~~~~a~~~~~~~~~~--g~~------------~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~~~~~~~l 130 (634)
....|.+.+...... +.. +|...-+..+..+...|++.+++.++++|.. =|+.+||.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 888999888877665 322 2333446667888899999999999998864 377788875
Q ss_pred HHHHHhC--------CC-------hhHHHHHHHHHHHC------CCCCChhhHHHHHHHHhcc--CCcHHHHHHHHHHHH
Q 006705 131 ISAYSQK--------AH-------SFEALNLFIRMLRS------DTEPNEFTFATVLTSCAGA--FGFELGKQIHSLIIK 187 (634)
Q Consensus 131 i~~~~~~--------g~-------~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~--~~~~~a~~~~~~~~~ 187 (634)
+-.+.++ .. ++.++-...+|... .+.|....+..++....-. ..+.--.+++.....
T Consensus 174 vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~ 253 (549)
T PF07079_consen 174 VLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWEN 253 (549)
T ss_pred HHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHh
Confidence 5444432 11 22233333333321 2445555555555544332 223334455555544
Q ss_pred hCCCCch-HHHHHHHHHHHhcCCHHHHHHHHccCC--------CCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCcc
Q 006705 188 SNFESHI-YVGSSLLDMYAKAGRIHEARGVFECLP--------ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS 258 (634)
Q Consensus 188 ~g~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~m~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 258 (634)
.-+.|+- .+...|+.-+.+ +.+++..+-+.+. ++=+.++..++...++.++..+|-+.+.-+..- .|
T Consensus 254 ~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp 329 (549)
T PF07079_consen 254 FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DP 329 (549)
T ss_pred hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CC
Confidence 4455543 334455555554 4455544443332 233457888888899999999998887776543 34
Q ss_pred ChhhHHH-------HHHHHh-cc---cchHHHHHHHHHHHHcCCCCchhHHHHHH---HHHHhcCC-HHHHHHHHhhcCC
Q 006705 259 NYVTYAS-------VLTALS-GL---AALGHGKQVHSHVLRFEIPSYVVLQNSLI---DMYSKCGS-LTYSRRVFDNMSE 323 (634)
Q Consensus 259 ~~~t~~~-------ll~~~~-~~---~~~~~a~~i~~~~~~~~~~~~~~~~~~li---~~~~~~g~-~~~A~~~f~~m~~ 323 (634)
+...-.- +-+..+ .- .++..-..++..+...++..- ..-.-|+ .-+-+.|. -++|.++++.+.+
T Consensus 330 ~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ 408 (549)
T PF07079_consen 330 RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ 408 (549)
T ss_pred cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3321111 111111 11 112222334444443332211 1111222 22344454 6777777776653
Q ss_pred ---CChhhHHHHH----HHHHhc---CChHHHHHHHHHHHHcCCCCCCHH----HHHHHHHH--HhccCcHHHHHHHHHH
Q 006705 324 ---RTVISWNAML----VGYSKH---GMGREVVELFNLMREENKVKPDSV----TYLAVLSG--CSHGGMEDRGLAVFHE 387 (634)
Q Consensus 324 ---~~~~~~~~li----~~~~~~---g~~~~A~~~~~~m~~~~g~~pd~~----t~~~ll~a--~~~~g~~~~a~~~~~~ 387 (634)
-|...-|... ..|.+. ..+.+-+.+-+-+.+. |++|-.+ .-+.+.+| +...|++.++.-+-.-
T Consensus 409 ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~-gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~W 487 (549)
T PF07079_consen 409 FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEV-GLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSW 487 (549)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-CCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 3444433322 223221 1233333443444455 7777443 23333333 4557888887665555
Q ss_pred hhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 006705 388 IVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLL 438 (634)
Q Consensus 388 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll 438 (634)
+. .+.|++.+|..+.-.+....++++|..++..+| |+..+|++-+
T Consensus 488 L~----~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~dskv 532 (549)
T PF07079_consen 488 LT----KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDSKV 532 (549)
T ss_pred HH----HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHHHH
Confidence 54 678999999998888888999999999999986 5766666543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.46 Score=46.90 Aligned_cols=119 Identities=13% Similarity=0.131 Sum_probs=87.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcH
Q 006705 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGME 378 (634)
Q Consensus 299 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~ 378 (634)
+.-|.-+...|+...|.++-.+..-|+-.-|-..+.+|+..+++++-.++... . -.++-|-.++.+|.+.|..
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s---k----KsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS---K----KSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C----CCCCChHHHHHHHHHCCCH
Confidence 33455566788899999998888888999999999999999999877665432 1 1347788888999999999
Q ss_pred HHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006705 379 DRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLG 439 (634)
Q Consensus 379 ~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~ 439 (634)
.+|..+...+. +..-+.+|.++|.+.+|.+.-.+.. |......+..
T Consensus 254 ~eA~~yI~k~~------------~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~ 299 (319)
T PF04840_consen 254 KEASKYIPKIP------------DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILK 299 (319)
T ss_pred HHHHHHHHhCC------------hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHH
Confidence 99888876632 2446788899999999887765543 4444444433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.75 Score=48.99 Aligned_cols=127 Identities=12% Similarity=0.050 Sum_probs=93.4
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 006705 347 ELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426 (634)
Q Consensus 347 ~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 426 (634)
.+.+.+..+.|..-...|.+-.+.-+...|...+|.++-.+.. -||...|-.-+.+++..+++++-+++-+++.
T Consensus 669 ~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk------ipdKr~~wLk~~aLa~~~kweeLekfAkskk 742 (829)
T KOG2280|consen 669 KLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK------IPDKRLWWLKLTALADIKKWEELEKFAKSKK 742 (829)
T ss_pred HHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC------CcchhhHHHHHHHHHhhhhHHHHHHHHhccC
Confidence 3444444443444555666777777888898888888766543 5788888888899999999999888887764
Q ss_pred CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHH
Q 006705 427 FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVREL 490 (634)
Q Consensus 427 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 490 (634)
.+.-|.-+..+|.+.|+.++|..++.+.-. +.-.+.+|.+.|++.+|.++--+
T Consensus 743 ---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 743 ---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred ---CCCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHH
Confidence 245677788999999999999887765432 22578899999999998876443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.021 Score=49.22 Aligned_cols=89 Identities=11% Similarity=0.023 Sum_probs=77.6
Q ss_pred HHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcH
Q 006705 405 VVDMLGRAGRVGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482 (634)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 482 (634)
...-+-..|++++|..+|+-+ -..-+..-|..|..+|...++++.|...+..+..++++|+.++...+..|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 344455789999999999976 113456678899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 006705 483 DVTRVRELMKE 493 (634)
Q Consensus 483 ~A~~~~~~m~~ 493 (634)
.|...|....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998865
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0086 Score=58.26 Aligned_cols=124 Identities=10% Similarity=0.131 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhh---HHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 006705 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS---WNAMLVG-YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC 372 (634)
Q Consensus 297 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~---~~~li~~-~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~ 372 (634)
+|-.++...-+.+.++.|+.+|.+..+....+ |-..... |...++.+.|..+|+...+. +..+...+...+.-+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHH
Confidence 44445555555555555555555554332222 2222222 22234455577777776664 445555566666666
Q ss_pred hccCcHHHHHHHHHHhhhccCCccC---ChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006705 373 SHGGMEDRGLAVFHEIVDCKDGFEP---EIEHYGCVVDMLGRAGRVGEALEFIKNM 425 (634)
Q Consensus 373 ~~~g~~~~a~~~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m 425 (634)
.+.++.+.++.+|+..... +.+ ....|...++.=.+.|+++.+.++.+++
T Consensus 81 ~~~~d~~~aR~lfer~i~~---l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~ 133 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS---LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRA 133 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT---SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh---cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6777777777777777642 222 2246777777777777777777777665
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.15 Score=44.50 Aligned_cols=134 Identities=7% Similarity=0.058 Sum_probs=99.8
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---HH
Q 006705 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPT---AA 432 (634)
Q Consensus 357 g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~ 432 (634)
.+.|+...-..|..+....|+..+|...|++...- -+.-|....-.+.++....+++.+|...++.+ ..+|+ ..
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG--~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd 161 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSG--IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD 161 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc--ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC
Confidence 34677777777888888888888888888888762 34567777778888888888888888888875 22221 12
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 433 ILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 433 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
+.-.+...+...|.++.|+..++.+..--|. +..-......+.++|+.+++..-+..+.+
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3344557888889999999999999888876 56666777888999998888766555543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0028 Score=46.09 Aligned_cols=59 Identities=19% Similarity=0.158 Sum_probs=35.6
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC
Q 006705 406 VDMLGRAGRVGEALEFIKNM-PFEP-TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN 464 (634)
Q Consensus 406 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 464 (634)
...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++.+..|++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 44556666666666666665 2233 34456666666667777777777777777766664
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.004 Score=58.39 Aligned_cols=93 Identities=13% Similarity=0.189 Sum_probs=75.5
Q ss_pred HHHhccCcHHHHHHHHHHhhhccCCccC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 006705 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEP-EIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPT-AAILGSLLGACRVHYN 446 (634)
Q Consensus 370 ~a~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~ 446 (634)
.-..+.+++.+|+..|...++ +.| |..-|..-..+|.+.|.++.|.+-.+.. .+.|. ..+|..|..+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~----l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE----LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh----cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc
Confidence 347788999999999999984 455 5566666788899999999998877665 44444 4578889999999999
Q ss_pred chHHHHHHHHHhccCCCCCc
Q 006705 447 VDIGEFVGQRLMEIEPENAG 466 (634)
Q Consensus 447 ~~~a~~~~~~~~~~~p~~~~ 466 (634)
+++|.+.++++++++|++..
T Consensus 165 ~~~A~~aykKaLeldP~Ne~ 184 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNES 184 (304)
T ss_pred HHHHHHHHHhhhccCCCcHH
Confidence 99999999999999999863
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.043 Score=45.26 Aligned_cols=93 Identities=18% Similarity=0.143 Sum_probs=66.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHH
Q 006705 332 MLVGYSKHGMGREVVELFNLMREENKVKPDS--VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDML 409 (634)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~ 409 (634)
+..++-..|+.++|+.+|++.... |..... ..+..+.+++...|++++|..+++.....+++-+-+......+..++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 445677789999999999998887 766553 46677778888999999999999988865311111233333445567
Q ss_pred HHcCCHHHHHHHHHhC
Q 006705 410 GRAGRVGEALEFIKNM 425 (634)
Q Consensus 410 ~~~g~~~~A~~~~~~m 425 (634)
...|+.++|++.+-..
T Consensus 86 ~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEA 101 (120)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 7889999988877543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0014 Score=48.13 Aligned_cols=53 Identities=13% Similarity=0.273 Sum_probs=42.5
Q ss_pred HhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 442 RVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 442 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
...|++++|...++++.+..|++...+..++.+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35678888888888888888888888888888888888888888888877654
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0038 Score=46.62 Aligned_cols=56 Identities=16% Similarity=0.162 Sum_probs=49.4
Q ss_pred HHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 439 GACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 439 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
..+...++++.|..+++.+++++|+++..+...+.+|.+.|++++|.+.++...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46778888999999999999999999999999999999999999999999988755
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.70 E-value=1.1 Score=47.37 Aligned_cols=201 Identities=11% Similarity=0.132 Sum_probs=110.3
Q ss_pred CCCHhhHHHHHHHHhccCCchHHHHHHHHHHH---------hCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCCCCcc
Q 006705 55 EMRFEEYDTLLNACVNQRTLRGGQRVHAHMIK---------TCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVV 125 (634)
Q Consensus 55 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---------~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~ 125 (634)
.|.+..|..+..+....-+++.|.+.|-.... .+--.+.....+=|.+| .|++++|++++-+|..+|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh-
Confidence 45566666666555555555555555433211 11011111222223333 4899999999999888775
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC----hhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHH
Q 006705 126 SWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN----EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLL 201 (634)
Q Consensus 126 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 201 (634)
-|..+.+.|++-...++++. -|-..| ...|..+...++....++.|.+.+.+--. ....+
T Consensus 766 ----Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ 829 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQI 829 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHH
Confidence 35566667777666555532 111111 23566666666666667777666654311 11255
Q ss_pred HHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHH
Q 006705 202 DMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQ 281 (634)
Q Consensus 202 ~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 281 (634)
.+|.+..++++-+.+-..+++. ....-.|...+...|.-++|.+.|-+--. | ...+.+|..++++.+|.+
T Consensus 830 ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~ave 899 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAVE 899 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666553 33444566677777777777665533211 1 234556666666666655
Q ss_pred HHH
Q 006705 282 VHS 284 (634)
Q Consensus 282 i~~ 284 (634)
+-.
T Consensus 900 laq 902 (1189)
T KOG2041|consen 900 LAQ 902 (1189)
T ss_pred HHH
Confidence 543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.02 Score=53.93 Aligned_cols=97 Identities=20% Similarity=0.180 Sum_probs=70.2
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccC-ChHHHHHHHHHHHHcCC
Q 006705 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP-EIEHYGCVVDMLGRAGR 414 (634)
Q Consensus 336 ~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~ 414 (634)
+.+.+++.+|+..|.+..+. .+-|.+-|..=..+|++.|.++.|++-.+..+. +.| ....|..|..+|...|+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~----iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS----IDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh----cChHHHHHHHHHHHHHHccCc
Confidence 55677888888888888764 334556666777788888888888877776663 344 36678888888888888
Q ss_pred HHHHHHHHHhC-CCCCCHHHHHHHH
Q 006705 415 VGEALEFIKNM-PFEPTAAILGSLL 438 (634)
Q Consensus 415 ~~~A~~~~~~m-~~~p~~~~~~~ll 438 (634)
+++|++.|++. .+.|+..+|-+=|
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHH
Confidence 88888888775 6677766665444
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.055 Score=46.41 Aligned_cols=89 Identities=9% Similarity=0.067 Sum_probs=47.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCccC-hhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 006705 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISN-YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSK 307 (634)
Q Consensus 229 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~ 307 (634)
-++...+.+.|++++|..+|+.+..- .|. ..-|-.+-.+|-..|++.+|...+....... +.|+..+-.+..+|.+
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 34444455566666666666655543 232 2233344444445555666666665555554 3445555555556666
Q ss_pred cCCHHHHHHHHhh
Q 006705 308 CGSLTYSRRVFDN 320 (634)
Q Consensus 308 ~g~~~~A~~~f~~ 320 (634)
.|+.+.|++-|+.
T Consensus 116 lG~~~~A~~aF~~ 128 (157)
T PRK15363 116 CDNVCYAIKALKA 128 (157)
T ss_pred cCCHHHHHHHHHH
Confidence 6666666666554
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.015 Score=52.29 Aligned_cols=88 Identities=9% Similarity=0.127 Sum_probs=50.3
Q ss_pred CCcchHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcc----------------CCcHHHHH
Q 006705 122 RNVVSWTAMISAYSQK-----AHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGA----------------FGFELGKQ 180 (634)
Q Consensus 122 ~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----------------~~~~~a~~ 180 (634)
+|-.+|..+|..|.+. |..+=....+..|.+-|+.-|..+|+.||..+-+. .+-+-|.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 3444444444444332 33333334444444445555555555555443321 23456778
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 006705 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGR 209 (634)
Q Consensus 181 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 209 (634)
++++|...|+-||..++..|++.+++.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 88888888888888888888888876654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.037 Score=49.27 Aligned_cols=80 Identities=8% Similarity=0.005 Sum_probs=43.1
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC--ChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 006705 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEP--NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLD 202 (634)
Q Consensus 125 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 202 (634)
..|..+...+...|++++|+..|++.......| ...++..+...+...|+.++|...+..+.+.. +.....++.+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 345556666666677777777776665432222 12345555555666666666666666665542 222333444444
Q ss_pred HHH
Q 006705 203 MYA 205 (634)
Q Consensus 203 ~y~ 205 (634)
.|.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 444
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.12 Score=47.65 Aligned_cols=127 Identities=9% Similarity=0.023 Sum_probs=63.9
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCc-----hHHHHHHHH
Q 006705 128 TAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH-----IYVGSSLLD 202 (634)
Q Consensus 128 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~li~ 202 (634)
+.++..+.-.|.+.-.+.++.+..+...+.+......+.+...+.||.+.|...++.+.+..-..+ ..+.-....
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 344444445555555566666665554444555555555555566666666666665554322222 222222333
Q ss_pred HHHhcCCHHHHHHHHccCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 006705 203 MYAKAGRIHEARGVFECLPER---DVVSCTAIISGYAQLGLDEEAIELFRKLQVE 254 (634)
Q Consensus 203 ~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 254 (634)
.|.-.+++.+|...|++++.. |++.-|.-.-+..-.|+..+|++.++.|+..
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444455566666666555442 3334443333333345566666666666553
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0012 Score=40.59 Aligned_cols=33 Identities=33% Similarity=0.617 Sum_probs=30.4
Q ss_pred HHHHhccCCCCCchHHHHHHHHhhcCCcHHHHH
Q 006705 454 GQRLMEIEPENAGNYVILSNLYASAGRWEDVTR 486 (634)
Q Consensus 454 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 486 (634)
++++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 578899999999999999999999999999863
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.35 Score=44.51 Aligned_cols=86 Identities=10% Similarity=0.113 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHH
Q 006705 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408 (634)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~ 408 (634)
+..+|.-|-......+|...+..+... + ...-..+..-|.+.|.+..|..-++.+++.+++.+........|+.+
T Consensus 113 ~~~li~~yP~S~y~~~A~~~l~~l~~~--l---a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~ 187 (203)
T PF13525_consen 113 FEELIKRYPNSEYAEEAKKRLAELRNR--L---AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEA 187 (203)
T ss_dssp HHHHHHH-TTSTTHHHHHHHHHHHHHH--H---HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCchHHHHHHHHHHHHHHH--H---HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 344555555555555665555444432 0 01112345567788888888888888887764444445566777778
Q ss_pred HHHcCCHHHHH
Q 006705 409 LGRAGRVGEAL 419 (634)
Q Consensus 409 ~~~~g~~~~A~ 419 (634)
|.+.|..+.|.
T Consensus 188 y~~l~~~~~a~ 198 (203)
T PF13525_consen 188 YYKLGLKQAAD 198 (203)
T ss_dssp HHHTT-HHHHH
T ss_pred HHHhCChHHHH
Confidence 88888777543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.011 Score=43.35 Aligned_cols=61 Identities=15% Similarity=0.207 Sum_probs=34.3
Q ss_pred ccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 006705 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTAAILGSL 437 (634)
Q Consensus 374 ~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 437 (634)
..|++++|.++|+.+.... +-+...+..++.+|.+.|++++|.++++++ ...|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN---PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT---TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 3566666666666666431 225556666666666666666666666666 334554444333
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.055 Score=51.28 Aligned_cols=101 Identities=14% Similarity=0.149 Sum_probs=83.7
Q ss_pred cCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcC---CchHHHHHHHHHhccCCCCCchHHH
Q 006705 396 EPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHY---NVDIGEFVGQRLMEIEPENAGNYVI 470 (634)
Q Consensus 396 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~p~~~~~~~~ 470 (634)
+-|.+.|-.|...|.+.|+.+.|..-|.+. .+ .++...+..+..++.... ...++..+++++++.+|.|+.+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 558899999999999999999999999886 22 345566666665554333 3457889999999999999999999
Q ss_pred HHHHHhhcCCcHHHHHHHHHHhhCCC
Q 006705 471 LSNLYASAGRWEDVTRVRELMKEKAV 496 (634)
Q Consensus 471 l~~~~~~~g~~~~A~~~~~~m~~~~~ 496 (634)
|.-.+...|++.+|...++.|.+...
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999987654
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.37 Score=42.20 Aligned_cols=63 Identities=8% Similarity=0.014 Sum_probs=27.2
Q ss_pred cChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 006705 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDN 320 (634)
Q Consensus 258 p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 320 (634)
|+...-..+..+....|+..+|...+.+...--+-.|..+.-.+.++....++...|...+++
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 333333344444444444444444444444333334444444444444444444444444443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.027 Score=50.69 Aligned_cols=97 Identities=15% Similarity=0.292 Sum_probs=75.6
Q ss_pred HHHHhhc--CCCChhhHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccC-----------
Q 006705 315 RRVFDNM--SERTVISWNAMLVGYSKH-----GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG----------- 376 (634)
Q Consensus 315 ~~~f~~m--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g----------- 376 (634)
...|+.. ..+|-.+|..++..|.+. |..+=....++.|.+- |+.-|..+|+.||+.+=+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~ef-gv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEF-GVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHc-CCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 4556665 456778888888887754 5666667778888888 89999999999998875522
Q ss_pred -----cHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCC
Q 006705 377 -----MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414 (634)
Q Consensus 377 -----~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 414 (634)
.-+-|++++++|... |+-||.+++..|++.+++.+.
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~--gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENN--GVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHc--CCCCcHHHHHHHHHHhccccH
Confidence 235688999999985 999999999999999987664
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.89 Score=51.08 Aligned_cols=157 Identities=18% Similarity=0.181 Sum_probs=92.4
Q ss_pred CCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHH
Q 006705 208 GRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287 (634)
Q Consensus 208 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~ 287 (634)
++++.|+.-+..+. ...|+-.+.---+.|.+++|+.++ +|+...+..+..+|+. .+.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~------------hL~ 950 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYAD------------HLR 950 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHH------------HHH
Confidence 45555555554443 223444444444556666666554 6777777766666543 111
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHH--H
Q 006705 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVT--Y 365 (634)
Q Consensus 288 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t--~ 365 (634)
+.. . ++--.-+|.++|+.++|.+. |...|++.+|+.+..+|.. .-|... -
T Consensus 951 ~~~-~-----~~~Aal~Ye~~GklekAl~a------------------~~~~~dWr~~l~~a~ql~~----~~de~~~~a 1002 (1265)
T KOG1920|consen 951 EEL-M-----SDEAALMYERCGKLEKALKA------------------YKECGDWREALSLAAQLSE----GKDELVILA 1002 (1265)
T ss_pred Hhc-c-----ccHHHHHHHHhccHHHHHHH------------------HHHhccHHHHHHHHHhhcC----CHHHHHHHH
Confidence 111 1 11223357888888888654 5567888888888877743 223322 2
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006705 366 LAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425 (634)
Q Consensus 366 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 425 (634)
-.|.+-+...++.-+|-++..+.... ..--+..|++...+++|..+....
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~sd----------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLSD----------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhcC----------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 45666677778877777776665532 223456677788888888877665
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.076 Score=43.77 Aligned_cols=91 Identities=16% Similarity=0.115 Sum_probs=51.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCccCh--hhHHHHHHHHhcccchHHHHHHHHHHHHcCCC--CchhHHHHHHHHHH
Q 006705 231 IISGYAQLGLDEEAIELFRKLQVEGMISNY--VTYASVLTALSGLAALGHGKQVHSHVLRFEIP--SYVVLQNSLIDMYS 306 (634)
Q Consensus 231 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~--~~~~~~~~li~~~~ 306 (634)
+..++-..|+.++|+.+|++....|...+. ..+..+-+++...|++++|..+++........ .+..+...+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 344566677888888888887777655442 34445556666777777777777766654211 01222222233445
Q ss_pred hcCCHHHHHHHHhhc
Q 006705 307 KCGSLTYSRRVFDNM 321 (634)
Q Consensus 307 ~~g~~~~A~~~f~~m 321 (634)
..|+.++|...+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 556666666555443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0073 Score=44.45 Aligned_cols=65 Identities=15% Similarity=0.152 Sum_probs=44.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CchHHHHHHHHHhccCC
Q 006705 398 EIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEP-TAAILGSLLGACRVHY-NVDIGEFVGQRLMEIEP 462 (634)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~p 462 (634)
+...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|...++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456667777777777777777777765 2223 4556667777777777 67777777777777766
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.33 E-value=1 Score=44.65 Aligned_cols=87 Identities=14% Similarity=0.024 Sum_probs=47.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCC-hHHHHHHHHHHHH
Q 006705 335 GYSKHGMGREVVELFNLMREEN--KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE-IEHYGCVVDMLGR 411 (634)
Q Consensus 335 ~~~~~g~~~~A~~~~~~m~~~~--g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~ 411 (634)
-..++|++.+|.+.|.+..... .++|+...|.....+..+.|+.++|+.--+...+ +.|. ...|..-..++.-
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~----iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK----IDSSYIKALLRRANCHLA 333 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh----cCHHHHHHHHHHHHHHHH
Confidence 3456777777777777765320 2333444455555566677777777766665552 2221 2222222333444
Q ss_pred cCCHHHHHHHHHhC
Q 006705 412 AGRVGEALEFIKNM 425 (634)
Q Consensus 412 ~g~~~~A~~~~~~m 425 (634)
.+.|++|.+-+++.
T Consensus 334 le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHH
Confidence 56677777766654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.31 E-value=1.3 Score=43.67 Aligned_cols=288 Identities=13% Similarity=0.104 Sum_probs=159.9
Q ss_pred hHHHHHHHHHh--CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHh--ccCCcHHHHHHHHHHHHhCCCCchHH--HHH
Q 006705 126 SWTAMISAYSQ--KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCA--GAFGFELGKQIHSLIIKSNFESHIYV--GSS 199 (634)
Q Consensus 126 ~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~ 199 (634)
-|.+|-.++.- .|+-..|.++-.+-.+. +..|...+..+|.+-+ -.|+.+.|++-|+-|... |.... ...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 34555555443 35555555554443221 3344455555555433 347777777777777531 22111 111
Q ss_pred HHHHHHhcCCHHHHHHHHccCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHhhcC-CccChh--hHHHHHHHHhc-
Q 006705 200 LLDMYAKAGRIHEARGVFECLPE--R-DVVSCTAIISGYAQLGLDEEAIELFRKLQVEG-MISNYV--TYASVLTALSG- 272 (634)
Q Consensus 200 li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~~~~~- 272 (634)
|.-.--+.|..+.|+..-+.... | -...|.+.+...+..|+++.|+++++.-+... +.+|.. .-..++.+-+.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 22222345666666665554432 2 23467777778888888888888877665432 333332 12223322211
Q ss_pred --ccchHHHHHHHHHHHHcCCCCchhH-HHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 006705 273 --LAALGHGKQVHSHVLRFEIPSYVVL-QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF 349 (634)
Q Consensus 273 --~~~~~~a~~i~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~ 349 (634)
..+...|+..-.+..+. .||..- --.-...|.+.|++.++-.+++.+-+.....- +...|.+..-.+.++.-+
T Consensus 240 ~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~lY~~ar~gdta~dRl 315 (531)
T COG3898 240 LLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IALLYVRARSGDTALDRL 315 (531)
T ss_pred HhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHHHHHHhcCCCcHHHHH
Confidence 12344455544444443 333221 11234567888888888888888764322221 223344444445566655
Q ss_pred HHHHHcCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHH-cCCHHHHHHHHHhC
Q 006705 350 NLMREENKVKPDS-VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR-AGRVGEALEFIKNM 425 (634)
Q Consensus 350 ~~m~~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m 425 (634)
++..+....+||. .+...+..+-...|++..|..--+... ...|....|-.|.+.-.. .|+-.++...+.+.
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~----r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA----REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh----hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 5554432456665 566677777888888888877666665 457888888888877654 48888888888776
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.35 Score=48.19 Aligned_cols=158 Identities=11% Similarity=0.059 Sum_probs=79.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCC---C----hhhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 006705 301 LIDMYSKCGSLTYSRRVFDNMSER---T----VISWNAMLVGYSK---HGMGREVVELFNLMREENKVKPDSVTYLAVLS 370 (634)
Q Consensus 301 li~~~~~~g~~~~A~~~f~~m~~~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~ 370 (634)
|+-.|-...+++...++.+.+... + ...--...-++.+ .|+.++|++++..+... ...++..||..+..
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLGLLGR 225 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHHHHHH
Confidence 333466777777777777777643 1 1111223445556 77888888888885555 45667777766655
Q ss_pred HHh---------ccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHH----HHHH---HhC-------CC
Q 006705 371 GCS---------HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA----LEFI---KNM-------PF 427 (634)
Q Consensus 371 a~~---------~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A----~~~~---~~m-------~~ 427 (634)
.|- .....++|...|.+.- .+.|+..+--.++.++...|.-.+. .++- ..+ ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF----e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF----EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH----cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 432 1223566666666554 3344443333333334444432211 1111 000 01
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCC
Q 006705 428 EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE 463 (634)
Q Consensus 428 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 463 (634)
..|-..+.+++.++.-.|+.+.|.+..+++.++.|+
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 123333345555555555555555555555555443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.17 Score=53.64 Aligned_cols=69 Identities=13% Similarity=0.105 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHH
Q 006705 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTAAI 433 (634)
Q Consensus 361 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~ 433 (634)
+...|..+.-.....|++++|...++++.. +.|+...|..+...+...|+.++|.+.+++. ...|...+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~----L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAID----LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 445566555555566888888888888884 3567788888888888888888888888764 33444333
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.5 Score=49.25 Aligned_cols=202 Identities=17% Similarity=0.141 Sum_probs=106.9
Q ss_pred HhhHHHHHHHHhccCCchHHHHH--HHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCCCCcchHHHHHHHHH
Q 006705 58 FEEYDTLLNACVNQRTLRGGQRV--HAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYS 135 (634)
Q Consensus 58 ~~~~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 135 (634)
.-.++..=+||.+.+++.--+-+ ++.+.+.|-.|+... +...++-.|.+.+|.++|.+
T Consensus 598 AL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~----------------- 657 (1081)
T KOG1538|consen 598 ALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR----------------- 657 (1081)
T ss_pred hhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH-----------------
Confidence 34456666777777776554444 345666665566543 33445566888888888865
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 006705 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215 (634)
Q Consensus 136 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 215 (634)
+|....|+++|.+|+-- -..+-+...|+.++-+.+.+.-.+.. .+..--.+...++...|+.++|..
T Consensus 658 -~G~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~WA--r~~kePkaAAEmLiSaGe~~KAi~ 724 (1081)
T KOG1538|consen 658 -SGHENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADWA--RNIKEPKAAAEMLISAGEHVKAIE 724 (1081)
T ss_pred -cCchhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHHh--hhcCCcHHHHHHhhcccchhhhhh
Confidence 45566677777766531 12233344454444443332221110 000001123345555666666655
Q ss_pred HHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCch
Q 006705 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYV 295 (634)
Q Consensus 216 ~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~ 295 (634)
+. ..+|-.+-+.++-+++-. .+..+...+..-+-+...+..|.++|..+-+.
T Consensus 725 i~------------------~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------ 776 (1081)
T KOG1538|consen 725 IC------------------GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------ 776 (1081)
T ss_pred hh------------------hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhccH------
Confidence 42 233333444444333322 23334444444445555666666776655432
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 006705 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSE 323 (634)
Q Consensus 296 ~~~~~li~~~~~~g~~~~A~~~f~~m~~ 323 (634)
.+++++....+++.+|..+-++.++
T Consensus 777 ---ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 777 ---KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred ---HHHhhheeecccchHhHhhhhhCcc
Confidence 3567777777788888777777765
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.24 E-value=2.4 Score=46.29 Aligned_cols=193 Identities=12% Similarity=0.094 Sum_probs=110.1
Q ss_pred HHHHHHHH--hccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC--CCcchHHHHHHHHHh
Q 006705 61 YDTLLNAC--VNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE--RNVVSWTAMISAYSQ 136 (634)
Q Consensus 61 ~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~ 136 (634)
|..+++++ .+.|..++|..+++.....+.. |..+...+-..|...+..++|..+++...+ |+..-...+..+|++
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR 122 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVR 122 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHH
Confidence 55555554 4677788888777777655533 777788888888888888888888888776 444444455566777
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccC-C---------cHHHHHHHHHHHHhC-CCCchHHHHHHHHHHH
Q 006705 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAF-G---------FELGKQIHSLIIKSN-FESHIYVGSSLLDMYA 205 (634)
Q Consensus 137 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-~---------~~~a~~~~~~~~~~g-~~~~~~~~~~li~~y~ 205 (634)
.+.+.+-.+.--+|-+ ..+-+.+.|-++++.....- . +..|....+.+++.+ -.....=.-.-.....
T Consensus 123 ~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~ 201 (932)
T KOG2053|consen 123 EKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILE 201 (932)
T ss_pred HHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHH
Confidence 6666543222222222 12334556655655543321 1 223444455554433 1111111111223344
Q ss_pred hcCCHHHHHHHHc-----cCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 006705 206 KAGRIHEARGVFE-----CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG 255 (634)
Q Consensus 206 ~~g~~~~A~~~~~-----~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 255 (634)
..|.+++|..++. ....-+...-|--+..+...+++.+..++-.++...|
T Consensus 202 ~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 202 LQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred hcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 5677888888773 2222334444455666777788888888777777765
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.067 Score=51.16 Aligned_cols=94 Identities=14% Similarity=0.096 Sum_probs=47.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHH
Q 006705 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDS----VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404 (634)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 404 (634)
|..-+..+.+.|++++|+..|+.+.+. .|+. ..+..+..++...|++++|...|+.+.+.+++-+.....+-.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 333333334456666666666666654 2332 244455555666666666666666666543222222333444
Q ss_pred HHHHHHHcCCHHHHHHHHHhC
Q 006705 405 VVDMLGRAGRVGEALEFIKNM 425 (634)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~m 425 (634)
++..|...|+.++|.+.+++.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 444444555555555555443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.39 Score=39.43 Aligned_cols=140 Identities=14% Similarity=0.093 Sum_probs=82.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHH
Q 006705 337 SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416 (634)
Q Consensus 337 ~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 416 (634)
.-.|..++..++..+.... .+..-++-++.-....-+-+-..+.++.+-+-+ .+. .||++.
T Consensus 13 ildG~V~qGveii~k~v~S----sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiF-Dis--------------~C~NlK 73 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS----SNIKEYNWVICNIIDAADCDYVVETLDSIGKIF-DIS--------------KCGNLK 73 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH----S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS--GG--------------G-S-TH
T ss_pred HHhchHHHHHHHHHHHcCc----CCccccceeeeecchhhchhHHHHHHHHHhhhc-Cch--------------hhcchH
Confidence 3456677777777777665 233444444433333334444555555554432 222 345555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCCC
Q 006705 417 EALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496 (634)
Q Consensus 417 ~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 496 (634)
.....+-.+. .+......-+......|..++-..+...+.+-+..+|....-++.+|.+.|...++.+++++..++|+
T Consensus 74 rVi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 74 RVIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 5555555543 24445556677888889888888888888754444578889999999999999999999999999998
Q ss_pred c
Q 006705 497 T 497 (634)
Q Consensus 497 ~ 497 (634)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 5
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.34 Score=45.91 Aligned_cols=175 Identities=14% Similarity=0.046 Sum_probs=99.9
Q ss_pred HHHHHHhcCCHHHHHHHHccCCCC--Ch-hh---HHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhc-
Q 006705 200 LLDMYAKAGRIHEARGVFECLPER--DV-VS---CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG- 272 (634)
Q Consensus 200 li~~y~~~g~~~~A~~~~~~m~~~--~~-~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~- 272 (634)
....+.+.|++++|.+.|+++... +. .. .-.++.+|.+.+++++|...|++..+....-...-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 344456678888888888877542 21 11 223556777888888888888888775322222334333433321
Q ss_pred -c---------------cc---hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHH
Q 006705 273 -L---------------AA---LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAML 333 (634)
Q Consensus 273 -~---------------~~---~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li 333 (634)
. .+ ...|...++.++ +-|=...-..+|...+..+...=...--.+.
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li---------------~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia 182 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV---------------RGYPNSQYTTDATKRLVFLKDRLAKYELSVA 182 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHH---------------HHCcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 01 112223333333 3333333344444433333222111112345
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhh
Q 006705 334 VGYSKHGMGREVVELFNLMREENK-VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389 (634)
Q Consensus 334 ~~~~~~g~~~~A~~~~~~m~~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 389 (634)
.-|.+.|.+..|+.-|+.+.+... .+........+..+|...|..++|..+...+.
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 568899999999999999988632 22233566778889999999999988776654
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.26 Score=45.60 Aligned_cols=167 Identities=6% Similarity=-0.049 Sum_probs=105.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCC--CC--------hhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHH
Q 006705 197 GSSLLDMYAKAGRIHEARGVFECLPE--RD--------VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASV 266 (634)
Q Consensus 197 ~~~li~~y~~~g~~~~A~~~~~~m~~--~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 266 (634)
+++|+..|.-...+++-...|+.-.. .. ....+.++..+.-.|.+.-.+.++.+..+...+.+......+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 45566666555555555555443222 12 233456666677777888888888888876555566667777
Q ss_pred HHHHhcccchHHHHHHHHHHHHcCCCCchhHHH-----HHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHh
Q 006705 267 LTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN-----SLIDMYSKCGSLTYSRRVFDNMSER---TVISWNAMLVGYSK 338 (634)
Q Consensus 267 l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~ 338 (634)
.+.-.+.|+.+.|...++.+.+..-..|....+ .....|.-..++..|...|+++... |++.-|.-.-.+.-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 777778888888888888776653333333333 3333455667788888888777643 45555555555555
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCHHHHH
Q 006705 339 HGMGREVVELFNLMREENKVKPDSVTYL 366 (634)
Q Consensus 339 ~g~~~~A~~~~~~m~~~~g~~pd~~t~~ 366 (634)
.|+..+|++..+.|... .|...+-.
T Consensus 299 lg~l~DAiK~~e~~~~~---~P~~~l~e 323 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQ---DPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHhcc---CCccchhh
Confidence 78888888888888764 45544443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.021 Score=57.42 Aligned_cols=96 Identities=13% Similarity=-0.007 Sum_probs=61.9
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHH
Q 006705 398 EIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTA----AILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILS 472 (634)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 472 (634)
+...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|+.++|...+++++++.+. .|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 5667777888888888888888888774 555653 34777778888888888888888888776322 222111
Q ss_pred H--HHhhcCCcHHHHHHHHHHhhCCC
Q 006705 473 N--LYASAGRWEDVTRVRELMKEKAV 496 (634)
Q Consensus 473 ~--~~~~~g~~~~A~~~~~~m~~~~~ 496 (634)
. .+......++..++++....-|.
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCC
Confidence 1 11223344566677777766665
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.13 Score=49.11 Aligned_cols=102 Identities=12% Similarity=0.070 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHH
Q 006705 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPT----AAILGSL 437 (634)
Q Consensus 363 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~l 437 (634)
..|...+....+.|++++|...|+.+.+.++.-.-....+-.+...|...|++++|...|+.+ ...|+ ...+-.+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 344444444455688888888888888764222112346667777888888888888887776 11122 3344445
Q ss_pred HHHHHhcCCchHHHHHHHHHhccCCCC
Q 006705 438 LGACRVHYNVDIGEFVGQRLMEIEPEN 464 (634)
Q Consensus 438 l~~~~~~~~~~~a~~~~~~~~~~~p~~ 464 (634)
...+...|+.+.|...++.+.+..|++
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 556667777777777777777777764
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.1 Score=45.20 Aligned_cols=107 Identities=19% Similarity=0.253 Sum_probs=69.8
Q ss_pred HhccCcHHHHHHHHHHhhhccCCc-cCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHH
Q 006705 372 CSHGGMEDRGLAVFHEIVDCKDGF-EPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIG 450 (634)
Q Consensus 372 ~~~~g~~~~a~~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a 450 (634)
....++.+.+...+..+...+.|- -|+... ..-......-++++ -......++..+...|+++.+
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCHHHH
Confidence 345567777777777777665331 112111 01111122222222 123455667778889999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 451 EFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 451 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
....+.+...+|-+...|..++.+|...|+..+|.++++.+.
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999874
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.11 Score=43.24 Aligned_cols=49 Identities=12% Similarity=0.085 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHH
Q 006705 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407 (634)
Q Consensus 358 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~ 407 (634)
..|+..+..+++.+|+..|++..|.++.+...+.| +++-+..+|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y-~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY-PIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc-CCCCCHHHHHHHHH
Confidence 44555555555555555555555555555555555 34444444444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.12 Score=42.98 Aligned_cols=53 Identities=19% Similarity=0.210 Sum_probs=42.5
Q ss_pred CccCChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCC
Q 006705 394 GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM----PFEPTAAILGSLLGACRVHYN 446 (634)
Q Consensus 394 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~~~~ 446 (634)
.+.|+..+..+++.+|+..|++..|+++++.. +++-+..+|..|+.-+....+
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 56789999999999999999999999998875 555568899998865544433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.19 Score=47.71 Aligned_cols=109 Identities=12% Similarity=0.106 Sum_probs=67.8
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh---ccCcHHHHHHHHHHhhhccCCccCChHH
Q 006705 325 TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS---HGGMEDRGLAVFHEIVDCKDGFEPEIEH 401 (634)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~---~~g~~~~a~~~~~~~~~~~~~~~p~~~~ 401 (634)
|...|-.|...|...|+++.|..-|.+..+. -.+|...+..+..++. ....-.++..+|+++.+. -+-++..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~---D~~~ira 229 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL---DPANIRA 229 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc---CCccHHH
Confidence 6677888888888888888888888777765 2333444444444432 223456677777777753 1335556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 006705 402 YGCVVDMLGRAGRVGEALEFIKNM-PFEPTAAILGSLL 438 (634)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll 438 (634)
...|...+...|++.+|...|+.| ..-|....|.+++
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 666666777777777777777776 2233444455555
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.084 Score=51.75 Aligned_cols=129 Identities=17% Similarity=0.007 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhh---ccCCc-cCChHHHHHHHHHHHHcCCHHHHHHHHHhC-------CC-CCC
Q 006705 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVD---CKDGF-EPEIEHYGCVVDMLGRAGRVGEALEFIKNM-------PF-EPT 430 (634)
Q Consensus 363 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~---~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~-~p~ 430 (634)
..|..|-..|.-.|+++.|+..++.-.+ .+ |- ...-..+..|.+++.-.|+++.|.+.++.. +. .-.
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef-GDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE 274 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF-GDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE 274 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHh-hhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence 3466666666777889988877664332 12 21 123456777888888889999998888764 11 112
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHhcc----C--CCCCchHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 431 AAILGSLLGACRVHYNVDIGEFVGQRLMEI----E--PENAGNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 431 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
.-+..+|.+.|....+++.|..++.+-+.+ + .....++.+|.++|...|..+.|..+.+.-.
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 335567778888888888887766554332 1 1135678899999999999998888776553
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.05 Score=40.41 Aligned_cols=60 Identities=13% Similarity=0.123 Sum_probs=37.1
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCc
Q 006705 407 DMLGRAGRVGEALEFIKNM-PFEP-TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAG 466 (634)
Q Consensus 407 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 466 (634)
..|.+.+++++|.++++.+ ...| +...|......+...|+++.|...++++.+..|+++.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 4556666666666666665 2222 3445555666666777777777777777777776543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.99 Score=41.53 Aligned_cols=173 Identities=12% Similarity=0.053 Sum_probs=80.5
Q ss_pred HHHHhcCCHHHHHHHHhhcCC--CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccC
Q 006705 303 DMYSKCGSLTYSRRVFDNMSE--RT----VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376 (634)
Q Consensus 303 ~~~~~~g~~~~A~~~f~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g 376 (634)
..+...|++++|.+.|+.+.. |+ ..+.-.++.++.+.|++++|...|++..+...-.|. ..+...+.+.+.-.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~-~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK-ADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc-hhhHHHHHHHHHHH
Confidence 344556666666666666652 21 123444556666666666666666666654211121 12222222221111
Q ss_pred cHHHHHHHHHHhhhccCCcc---CChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCchHHH
Q 006705 377 MEDRGLAVFHEIVDCKDGFE---PEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAIL--GSLLGACRVHYNVDIGE 451 (634)
Q Consensus 377 ~~~~a~~~~~~~~~~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~--~~ll~~~~~~~~~~~a~ 451 (634)
..... + .... ... --...+..++.-|-.+....+|...+..+. +...- -.+..-|.+.|.+..|.
T Consensus 92 ~~~~~---~--~~~~--D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~---~~la~~e~~ia~~Y~~~~~y~aA~ 161 (203)
T PF13525_consen 92 QIPGI---L--RSDR--DQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELR---NRLAEHELYIARFYYKRGKYKAAI 161 (203)
T ss_dssp HHHHH---H---TT-----HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHH---HHHHHHHHHHHHHHHCTT-HHHHH
T ss_pred hCccc---h--hccc--ChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHcccHHHHH
Confidence 11000 0 0000 000 001223333333434444444444433331 00000 11335678888899998
Q ss_pred HHHHHHhccCCCCC---chHHHHHHHHhhcCCcHHHHH
Q 006705 452 FVGQRLMEIEPENA---GNYVILSNLYASAGRWEDVTR 486 (634)
Q Consensus 452 ~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~ 486 (634)
.-++.+++.-|+.+ .+...++..|.+.|..+.|..
T Consensus 162 ~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 162 IRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 88898888888743 345678888999998775543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.027 Score=37.01 Aligned_cols=40 Identities=20% Similarity=0.221 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHH
Q 006705 433 ILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILS 472 (634)
Q Consensus 433 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 472 (634)
+|..+..++...|++++|+.+++++++..|+|+..+..|+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 5666777888888888888888888888888877666654
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.22 E-value=3.9 Score=41.17 Aligned_cols=131 Identities=15% Similarity=0.082 Sum_probs=67.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHH
Q 006705 328 SWNAMLVGYSKHGMGREVVELFNLMREENK-VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV 406 (634)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li 406 (634)
.|...+..-.+....+.|..+|-+..+. | +.++...+++++.-++ .|+...|..+|+.-... ++.+..--+..+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~kyl 473 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKYL 473 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHHH
Confidence 4445555555555555666666666665 4 4455555555554443 35555666666554432 122222223444
Q ss_pred HHHHHcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCC
Q 006705 407 DMLGRAGRVGEALEFIKNM--PFEPT--AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE 463 (634)
Q Consensus 407 ~~~~~~g~~~~A~~~~~~m--~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 463 (634)
.-+.+.++-+.|..+|+.. .+..+ ...|..+|.--..-|+...+..+-+++.+.-|.
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 5555566666666666533 11112 335555665555556665555555555555554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.03 E-value=4 Score=40.32 Aligned_cols=283 Identities=14% Similarity=0.080 Sum_probs=187.7
Q ss_pred HHHHHHHHH--cCCChHHHHHHHhhcCC---CCcchHHHHHHH--HHhCCChhHHHHHHHHHHHCCCCCCh--hhHHHHH
Q 006705 96 RTRLIVFYN--KCECLSDARKMFDEMRE---RNVVSWTAMISA--YSQKAHSFEALNLFIRMLRSDTEPNE--FTFATVL 166 (634)
Q Consensus 96 ~~~li~~y~--~~g~~~~A~~~~~~~~~---~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll 166 (634)
|.+|-.++. -.|+-..|++.-.+... .|....--|+.+ -.-.|++++|.+-|+.|... |.. .-+..+.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLy 161 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLY 161 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHH
Confidence 344444443 35777888877665442 344444444433 33469999999999999762 221 1233344
Q ss_pred HHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCC-----CCChh--hHHHHHHHHH---
Q 006705 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP-----ERDVV--SCTAIISGYA--- 236 (634)
Q Consensus 167 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~-----~~~~~--~~~~li~~~~--- 236 (634)
-..-+.|+.+.|.++-+..-..- +.-...+.+++...+..|+++.|+++.+.-. ++|+. .-..|+.+-+
T Consensus 162 leAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 44567788888888887776543 3345677889999999999999999998643 34443 1222332221
Q ss_pred hcCChHHHHHHHHHHhhcCCccChhh-HHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH-
Q 006705 237 QLGLDEEAIELFRKLQVEGMISNYVT-YASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYS- 314 (634)
Q Consensus 237 ~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A- 314 (634)
-..+...|...-.+.. .+.||..- -.....++.+.|++.++-.+++.+-+....|++ + ++..+.+.|+....
T Consensus 241 ldadp~~Ar~~A~~a~--KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gdta~dR 314 (531)
T COG3898 241 LDADPASARDDALEAN--KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGDTALDR 314 (531)
T ss_pred hcCChHHHHHHHHHHh--hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCCcHHHH
Confidence 1234555555444443 35677653 334456788999999999999999988655543 3 33446777774332
Q ss_pred ---HHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH-hccCcHHHHHHHHHHhhh
Q 006705 315 ---RRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC-SHGGMEDRGLAVFHEIVD 390 (634)
Q Consensus 315 ---~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~-~~~g~~~~a~~~~~~~~~ 390 (634)
.+-+..|+..|..+--+...+-...|++..|..--+.... ..|....|..+.+.- ...|+-.++.+.+.+.++
T Consensus 315 lkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r---~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 315 LKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR---EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh---hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 2346778888889988899999999999888777666654 478888888777764 455999999999988886
Q ss_pred c
Q 006705 391 C 391 (634)
Q Consensus 391 ~ 391 (634)
.
T Consensus 392 A 392 (531)
T COG3898 392 A 392 (531)
T ss_pred C
Confidence 4
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.035 Score=41.93 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHh
Q 006705 401 HYGCVVDMLGRAGRVGEALEFIKN 424 (634)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~ 424 (634)
+|+.+...|.+.|++++|++.|++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~ 30 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEK 30 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445555555555555555555554
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.13 Score=50.52 Aligned_cols=256 Identities=12% Similarity=0.045 Sum_probs=141.0
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChh----hHHHHHHHHhccCCcHHHHHHHHHHH--Hh--CCC-CchHHHHHHHHHH
Q 006705 134 YSQKAHSFEALNLFIRMLRSDTEPNEF----TFATVLTSCAGAFGFELGKQIHSLII--KS--NFE-SHIYVGSSLLDMY 204 (634)
Q Consensus 134 ~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~--~~--g~~-~~~~~~~~li~~y 204 (634)
+++.|+....+.+|+..++.|.. |.. .|..+-.+|.-.+++++|.++|..=+ .. |-. -.......|.+.+
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 56777777777888777776642 333 34445556666777777777764321 11 100 0111122233444
Q ss_pred HhcCCHHHHHHHHccC-------CCC--ChhhHHHHHHHHHhcCC--------------------hHHHHHHHHHHh---
Q 006705 205 AKAGRIHEARGVFECL-------PER--DVVSCTAIISGYAQLGL--------------------DEEAIELFRKLQ--- 252 (634)
Q Consensus 205 ~~~g~~~~A~~~~~~m-------~~~--~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~--- 252 (634)
--.|.+++|.-+-.+- ..+ ...++..+...|...|+ ++.|.++|.+=.
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555554432211 110 11233334444544332 123334433221
Q ss_pred -hcCCc-cChhhHHHHHHHHhcccchHHHHHHHHHHHH----cCC-CCchhHHHHHHHHHHhcCCHHHHHHHHhhcC---
Q 006705 253 -VEGMI-SNYVTYASVLTALSGLAALGHGKQVHSHVLR----FEI-PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS--- 322 (634)
Q Consensus 253 -~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~----~~~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--- 322 (634)
+.|-. .--..|..+-+.|.-+|+++.|...|+.-+. .|- ......+..|.++|.-.|+++.|.+.|+...
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 11110 1112455555556667889999888875432 221 1223456667788888899999988887543
Q ss_pred ----CCCh--hhHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 006705 323 ----ERTV--ISWNAMLVGYSKHGMGREVVELFNLMRE----ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390 (634)
Q Consensus 323 ----~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 390 (634)
.+.+ .+.-+|...|.-...+++|+.++.+-.. .+...-....+-+|..++...|..++|+.+.....+
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3333 3455677777777888888888765332 101222346788888899999999988877665554
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.24 Score=48.96 Aligned_cols=63 Identities=10% Similarity=0.003 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 432 AILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 432 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
.++..|..++.+.+++..|.....+.++++|+|.-+...-+.+|...|.++.|+..|+++.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 355667778889999999999999999999999999999999999999999999999999754
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=94.23 E-value=7.1 Score=39.55 Aligned_cols=189 Identities=14% Similarity=0.132 Sum_probs=105.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcC--CCChh-------hHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCCCH
Q 006705 296 VLQNSLIDMYSKCGSLTYSRRVFDNMS--ERTVI-------SWNAMLVGYS----KHGMGREVVELFNLMREENKVKPDS 362 (634)
Q Consensus 296 ~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~-------~~~~li~~~~----~~g~~~~A~~~~~~m~~~~g~~pd~ 362 (634)
..+..++....+.++...|.+.+.-+. +|+.. +-.++-+..+ ..-+...-+.+|+..... ..|.
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~---DiDr 375 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSY---DIDR 375 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhh---cccH
Confidence 345566666677777777776665443 23221 1111112222 112233445566665544 2333
Q ss_pred HH-HHHHHHH---HhccCc-HHHHHHHHHHhhhccCCccC-ChHHHHHHHH----HHHH---cCCHH---HHHHHHHhCC
Q 006705 363 VT-YLAVLSG---CSHGGM-EDRGLAVFHEIVDCKDGFEP-EIEHYGCVVD----MLGR---AGRVG---EALEFIKNMP 426 (634)
Q Consensus 363 ~t-~~~ll~a---~~~~g~-~~~a~~~~~~~~~~~~~~~p-~~~~~~~li~----~~~~---~g~~~---~A~~~~~~m~ 426 (634)
.- ...++.+ +-+.|. -++|..+++.+.+ +.| |...-|.+.. .|.. ...+. .-..++++.+
T Consensus 376 qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~----ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~g 451 (549)
T PF07079_consen 376 QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ----FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVG 451 (549)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH----hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 22 2222222 333444 7788888888874 333 3333332221 1211 11112 2233344444
Q ss_pred CCCC----HHHHHHHHHH--HHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 427 FEPT----AAILGSLLGA--CRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 427 ~~p~----~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
+.|- ...-|.|..| ...+|++..+.....-+.++.| ++.+|..++-.+....++++|..++..+.
T Consensus 452 l~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 452 LTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred CCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 4432 2334444433 5678999999988899999999 58999999999999999999999998773
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.21 E-value=1.2 Score=42.78 Aligned_cols=149 Identities=9% Similarity=0.038 Sum_probs=84.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHH----HHcCC
Q 006705 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDML----GRAGR 414 (634)
Q Consensus 339 ~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~----~~~g~ 414 (634)
.|+..+|-..++++.+. .+.|...+.-.=.+|...|+.+.-...++++... ..|+...|..+=.+| ..+|-
T Consensus 116 ~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~---wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK---WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred cccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc---cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 45666666666666664 4556566666666677777776666666666642 244554444433333 36677
Q ss_pred HHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCC----CCchHHHHHHHHhhcCCcHHHHHHH
Q 006705 415 VGEALEFIKNM-PFE-PTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE----NAGNYVILSNLYASAGRWEDVTRVR 488 (634)
Q Consensus 415 ~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~ 488 (634)
+++|++.-++. .+. -|...-.++.......++.++|.+.+.+-...-.. -...|-...-.|...+.++.|.++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 77777776665 332 23444455556666667777776665543322111 0123334444555567777777777
Q ss_pred HHHh
Q 006705 489 ELMK 492 (634)
Q Consensus 489 ~~m~ 492 (634)
+.=.
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 6543
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.18 E-value=3 Score=35.59 Aligned_cols=43 Identities=21% Similarity=0.273 Sum_probs=24.4
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 006705 265 SVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKC 308 (634)
Q Consensus 265 ~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~ 308 (634)
.++..+...+.......+++.+.+.+ +.+....|.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 44444544555555556666555554 34555666666666654
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.47 Score=44.41 Aligned_cols=101 Identities=18% Similarity=0.229 Sum_probs=80.9
Q ss_pred HHHHHHhhcC--CCChhhHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCc--------
Q 006705 313 YSRRVFDNMS--ERTVISWNAMLVGYSKH-----GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM-------- 377 (634)
Q Consensus 313 ~A~~~f~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~-------- 377 (634)
..++.|.... ++|-.+|-+++..+... +..+=....++.|.+. |+.-|..+|..||+.+-+..-
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~ey-GVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEY-GVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHh-cchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 3456677776 67888999999888764 4566666778889998 999999999999998765432
Q ss_pred --------HHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHH
Q 006705 378 --------EDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416 (634)
Q Consensus 378 --------~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 416 (634)
-+-+..++++|... |+.||.++-..|++++++.+..-
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~h--GVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWH--GVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHc--CCCCchHHHHHHHHHhccccccH
Confidence 23478999999986 99999999999999999888643
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.45 Score=41.05 Aligned_cols=57 Identities=14% Similarity=0.151 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 006705 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388 (634)
Q Consensus 330 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~ 388 (634)
..++..+...|++++|+.+.+.+... -+-|...+..++.++...|+...|.++|+.+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 33444555556666666666655554 2334555666666666666666665555544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.059 Score=40.66 Aligned_cols=61 Identities=15% Similarity=0.102 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHhcc----CCC---CCchHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 432 AILGSLLGACRVHYNVDIGEFVGQRLMEI----EPE---NAGNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 432 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
.+++.+...+...|++++|...+++++++ +++ -..++..++.+|...|++++|.+.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788889999999999999999888754 222 24567889999999999999999998864
|
... |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.93 Score=44.05 Aligned_cols=165 Identities=10% Similarity=0.036 Sum_probs=102.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHhhhccCC-cc--CChH
Q 006705 327 ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS---VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG-FE--PEIE 400 (634)
Q Consensus 327 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~~--p~~~ 400 (634)
.+|-.+..++-+.-++.+++.+-+.-....|..|.. ....++-.|....+-++++++.|+...+--.. -. ....
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 455556666666666666666655544433444421 23344566677777888888888877653101 11 1356
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHHHHH-----HHHHHHHhcCCchHHHHHHHHHhccC--CCCC-
Q 006705 401 HYGCVVDMLGRAGRVGEALEFIKNM-------PFEPTAAILG-----SLLGACRVHYNVDIGEFVGQRLMEIE--PENA- 465 (634)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~--p~~~- 465 (634)
+|..|...|++..++++|.-+..+. ....=..-|. -|.-+++..|..-.|.+..+++.++. ..|.
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 7888999999999988876655443 2221111222 34467888898888888777766532 2222
Q ss_pred ---chHHHHHHHHhhcCCcHHHHHHHHHH
Q 006705 466 ---GNYVILSNLYASAGRWEDVTRVRELM 491 (634)
Q Consensus 466 ---~~~~~l~~~~~~~g~~~~A~~~~~~m 491 (634)
....++.++|-..|+.|.|..-++..
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 33457899999999988887766654
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.33 Score=49.19 Aligned_cols=62 Identities=11% Similarity=0.072 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCCh----HHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006705 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEI----EHYGCVVDMLGRAGRVGEALEFIKNM 425 (634)
Q Consensus 360 pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m 425 (634)
.+...++.+..+|.+.|++++|...|+..++ +.|+. ..|..+..+|.+.|++++|++.+++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALe----L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALE----LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3457888899999999999999999999884 45663 35888999999999999999999886
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.4 Score=44.82 Aligned_cols=101 Identities=12% Similarity=0.113 Sum_probs=67.2
Q ss_pred hHHHHHHHhhcC--CCCcchHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccC--------
Q 006705 109 LSDARKMFDEMR--ERNVVSWTAMISAYSQK-----AHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAF-------- 173 (634)
Q Consensus 109 ~~~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-------- 173 (634)
+-..++.|...+ ++|-.+|-+++..|... +..+=.-..++.|.+-|+.-|..+|..||..+-+-.
T Consensus 50 Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ 129 (406)
T KOG3941|consen 50 LVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQ 129 (406)
T ss_pred ccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHH
Confidence 334456666666 57777888888777654 444545556777888888888888888887664432
Q ss_pred --------CcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 006705 174 --------GFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209 (634)
Q Consensus 174 --------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 209 (634)
+-+-+..++++|...|+.||-.+-..|++++++.|.
T Consensus 130 ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 130 KVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 223456667777777777777777777777766654
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.81 E-value=3.6 Score=35.08 Aligned_cols=84 Identities=15% Similarity=0.137 Sum_probs=41.5
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChh
Q 006705 62 DTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSF 141 (634)
Q Consensus 62 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 141 (634)
..++..+...+........++.+.+.+ ..+....|.++..|++.. ..+....++. ..+......+++.+.+.+.++
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHH
Confidence 445555555556666666666666655 345556666666666542 2233333331 122233333444444444444
Q ss_pred HHHHHHHH
Q 006705 142 EALNLFIR 149 (634)
Q Consensus 142 ~A~~~~~~ 149 (634)
++.-++..
T Consensus 87 ~~~~l~~k 94 (140)
T smart00299 87 EAVELYKK 94 (140)
T ss_pred HHHHHHHh
Confidence 44444443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.78 E-value=12 Score=40.62 Aligned_cols=100 Identities=8% Similarity=0.063 Sum_probs=60.8
Q ss_pred HHhccCCchHHHHHHHHHHHhCCCC---ChhHHHHHHHHHHcCCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHH
Q 006705 67 ACVNQRTLRGGQRVHAHMIKTCYRP---PVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEA 143 (634)
Q Consensus 67 ~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 143 (634)
...+.+.+++|..+-.... |..+ -..++...|+.+.-.|++++|-...-.|...+..-|---+.-+...++....
T Consensus 365 Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 365 WLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 3344445555555444332 2233 3456777888888888888888888888888888888777777777765543
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 006705 144 LNLFIRMLRSDTEPNEFTFATVLTSCAG 171 (634)
Q Consensus 144 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 171 (634)
..+ +.....+.+...|..+|..+..
T Consensus 443 a~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 443 APY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hcc---CCCCCcccCchHHHHHHHHHHH
Confidence 332 2222122344556666666655
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=93.75 E-value=5 Score=40.24 Aligned_cols=72 Identities=17% Similarity=0.207 Sum_probs=48.7
Q ss_pred HHHHHHHcCCChHHHHHHHhhcCCC-Cc-c-----hHHHHHHHHHh---CCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 006705 98 RLIVFYNKCECLSDARKMFDEMRER-NV-V-----SWTAMISAYSQ---KAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167 (634)
Q Consensus 98 ~li~~y~~~g~~~~A~~~~~~~~~~-~~-~-----~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 167 (634)
.|+-.|-...+++...++++.++.. +. . .---..-++.+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444687888999999999888763 11 1 11122334555 7889999999988766666677778776665
Q ss_pred HH
Q 006705 168 SC 169 (634)
Q Consensus 168 ~~ 169 (634)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 54
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.65 E-value=5.7 Score=36.50 Aligned_cols=196 Identities=18% Similarity=0.126 Sum_probs=115.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcC-----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 006705 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMS-----ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369 (634)
Q Consensus 295 ~~~~~~li~~~~~~g~~~~A~~~f~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll 369 (634)
..........+...+.+..+...+.... ......+..+...+...+.+.++.+.+...... ...+ ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~ 136 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALAL-DPDP-DLAEALLA 136 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcC-CCCc-chHHHHHH
Confidence 3445555556666666666666655543 223445555555666666677777777766653 2222 11122222
Q ss_pred H-HHhccCcHHHHHHHHHHhhhccCCc--cCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh
Q 006705 370 S-GCSHGGMEDRGLAVFHEIVDCKDGF--EPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPT--AAILGSLLGACRV 443 (634)
Q Consensus 370 ~-a~~~~g~~~~a~~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~ 443 (634)
. ++...|+++.+...+...... .- ......+......+...++.++|...+.+. ...++ ...+..+...+..
T Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 137 LGALYELGDYEEALELYEKALEL--DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 2 566777777777777776432 11 122333444444456677777777777765 22223 4566666677777
Q ss_pred cCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 444 HYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 444 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
.++.+.+...+.......|.....+..+...+...|.++++...+......
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777877777777777764455556666666666777777777776543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.50 E-value=12 Score=39.90 Aligned_cols=68 Identities=6% Similarity=-0.002 Sum_probs=38.0
Q ss_pred CCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCCC-----CcchHHHHHHHHHhCCChhHHHHH
Q 006705 72 RTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER-----NVVSWTAMISAYSQKAHSFEALNL 146 (634)
Q Consensus 72 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~ 146 (634)
|.+++|.+++-.+-+++ --|.++.+.|++-...+++..-... -..+|+.+...++....+++|.+.
T Consensus 748 g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred cchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777766665443 2356666677776666666542221 123455555555555555555555
Q ss_pred HH
Q 006705 147 FI 148 (634)
Q Consensus 147 ~~ 148 (634)
|.
T Consensus 819 Y~ 820 (1189)
T KOG2041|consen 819 YS 820 (1189)
T ss_pred HH
Confidence 44
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.35 E-value=1.4 Score=45.74 Aligned_cols=132 Identities=17% Similarity=0.182 Sum_probs=83.2
Q ss_pred HHHhcCChHHHHHHHH--HHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHc
Q 006705 335 GYSKHGMGREVVELFN--LMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA 412 (634)
Q Consensus 335 ~~~~~g~~~~A~~~~~--~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 412 (634)
...-.|+++++.++.+ ++.. .++ ..-...++.-+.+.|..+.|+++-..-.. -.++..++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~--~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~--------------rFeLAl~l 331 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP--NIP--KDQGQSIARFLEKKGYPELALQFVTDPDH--------------RFELALQL 331 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG--G----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH--------------HHHHHHHC
T ss_pred HHHHcCChhhhhhhhhhhhhcc--cCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH--------------HhHHHHhc
Confidence 3455677777766664 2221 122 33466677777788888888776443322 24556688
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 413 GRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 413 g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
|+++.|.++.++.. +...|..|.......|+.+.|+..+++ ..-+..|.-+|...|+.+.-.++.+...
T Consensus 332 g~L~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k--------~~d~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 332 GNLDIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQK--------AKDFSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp T-HHHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHH--------CT-HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHh--------hcCccccHHHHHHhCCHHHHHHHHHHHH
Confidence 88888888877663 777888888888888888888888887 3456678888888888877777776666
Q ss_pred hCC
Q 006705 493 EKA 495 (634)
Q Consensus 493 ~~~ 495 (634)
.+|
T Consensus 401 ~~~ 403 (443)
T PF04053_consen 401 ERG 403 (443)
T ss_dssp HTT
T ss_pred Hcc
Confidence 554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.74 Score=37.76 Aligned_cols=89 Identities=17% Similarity=0.109 Sum_probs=61.2
Q ss_pred HHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCC----chHHHHHHHHhhcCCc
Q 006705 408 MLGRAGRVGEALEFIKNM-P-FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENA----GNYVILSNLYASAGRW 481 (634)
Q Consensus 408 ~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~ 481 (634)
+++..|+++.|++.|.+. . .+.....||.-..+++..|+.++|..-+++++++..+.. .+|+--+.+|-..|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 456677777777777664 1 123556677777777777777777777777776543322 3466677778888888
Q ss_pred HHHHHHHHHHhhCCC
Q 006705 482 EDVTRVRELMKEKAV 496 (634)
Q Consensus 482 ~~A~~~~~~m~~~~~ 496 (634)
+.|..=|+...+.|.
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 888888888776654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.19 E-value=5.3 Score=41.53 Aligned_cols=155 Identities=12% Similarity=-0.019 Sum_probs=79.5
Q ss_pred HHhCCChhHHHHHHH-HHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHH
Q 006705 134 YSQKAHSFEALNLFI-RMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212 (634)
Q Consensus 134 ~~~~g~~~~A~~~~~-~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 212 (634)
..-.++++++.++.+ .-.-..++ ..-.+.++.-+-+.|-.+.|.++- .|+. .-.+...++|+++.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~---------~D~~---~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFV---------TDPD---HRFELALQLGNLDI 336 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHS---------S-HH---HHHHHHHHCT-HHH
T ss_pred HHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhc---------CChH---HHhHHHHhcCCHHH
Confidence 344566666555554 11111111 233555666666666666665542 2222 23344567788888
Q ss_pred HHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCC
Q 006705 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP 292 (634)
Q Consensus 213 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~ 292 (634)
|.++-++.. +...|..|.....++|+++-|.+.|.+..+ |..++-.|.-.|+.+.-.++.......|
T Consensus 337 A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-- 403 (443)
T PF04053_consen 337 ALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG-- 403 (443)
T ss_dssp HHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--
T ss_pred HHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc--
Confidence 877776655 556788888888888888888777766543 3444445555666666556655555544
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHh
Q 006705 293 SYVVLQNSLIDMYSKCGSLTYSRRVFD 319 (634)
Q Consensus 293 ~~~~~~~~li~~~~~~g~~~~A~~~f~ 319 (634)
-+|....++.-.|++++..+++.
T Consensus 404 ----~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 404 ----DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp -----HHHHHHHHHHHT-HHHHHHHHH
T ss_pred ----CHHHHHHHHHHcCCHHHHHHHHH
Confidence 12333344444566655555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.02 E-value=10 Score=43.23 Aligned_cols=47 Identities=11% Similarity=0.058 Sum_probs=23.1
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCchHHHH
Q 006705 406 VDMLGRAGRVGEALEFIKNMPFEPTAAIL--GSLLGACRVHYNVDIGEF 452 (634)
Q Consensus 406 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~--~~ll~~~~~~~~~~~a~~ 452 (634)
+.+|-.+|+|.+|+.+-.++....|...- ..|.+-+...++.-+|-.
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~ 1020 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAK 1020 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHH
Confidence 34455566666666666655433333321 344455555554444433
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.65 Score=43.62 Aligned_cols=82 Identities=12% Similarity=0.183 Sum_probs=47.5
Q ss_pred HcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCC---CCchHHHHHHHHhhcCC
Q 006705 411 RAGRVGEALEFIKNM-------PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE---NAGNYVILSNLYASAGR 480 (634)
Q Consensus 411 ~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~ 480 (634)
+.|++.+|..-|... ...||...| |..++...|+++.|...|..+.+-.|+ -+..+.-|+....+.|+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 344455555555443 123344444 445555666666666666555554444 34556667777777778
Q ss_pred cHHHHHHHHHHhhC
Q 006705 481 WEDVTRVRELMKEK 494 (634)
Q Consensus 481 ~~~A~~~~~~m~~~ 494 (634)
.++|..+++...++
T Consensus 231 ~d~A~atl~qv~k~ 244 (262)
T COG1729 231 TDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888777777654
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.88 E-value=9.8 Score=36.98 Aligned_cols=97 Identities=5% Similarity=-0.048 Sum_probs=44.8
Q ss_pred HHHHHHHHhcccchH---HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHH
Q 006705 263 YASVLTALSGLAALG---HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER---TVISWNAMLVGY 336 (634)
Q Consensus 263 ~~~ll~~~~~~~~~~---~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~ 336 (634)
+..+..++...+..+ +|..+++.+... .+..+.++-.-+..+.+.++.+.+.+++.+|... ....+..++..+
T Consensus 87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i 165 (278)
T PF08631_consen 87 LRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHI 165 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 334444454444333 334444444322 2223334434455555566666666666666532 223444444443
Q ss_pred ---HhcCChHHHHHHHHHHHHcCCCCCCH
Q 006705 337 ---SKHGMGREVVELFNLMREENKVKPDS 362 (634)
Q Consensus 337 ---~~~g~~~~A~~~~~~m~~~~g~~pd~ 362 (634)
... ....|...+..+... .+.|..
T Consensus 166 ~~l~~~-~~~~a~~~ld~~l~~-r~~~~~ 192 (278)
T PF08631_consen 166 KQLAEK-SPELAAFCLDYLLLN-RFKSSE 192 (278)
T ss_pred HHHHhh-CcHHHHHHHHHHHHH-HhCCCh
Confidence 322 234555555555544 344444
|
It is also involved in sporulation []. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=92.77 E-value=6.9 Score=42.83 Aligned_cols=214 Identities=15% Similarity=0.151 Sum_probs=85.9
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHhhcC---CCCcchHHHHHHHHHhCCCh-------hHHHHHHHHHHHCCCCCChh--
Q 006705 93 VYLRTRLIVFYNKCECLSDARKMFDEMR---ERNVVSWTAMISAYSQKAHS-------FEALNLFIRMLRSDTEPNEF-- 160 (634)
Q Consensus 93 ~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~-------~~A~~~~~~m~~~g~~p~~~-- 160 (634)
..+| ++|-.+.|||++++|.++..+.. ++....+-..+..|..+.+- +....-|++........|.+
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~ 190 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKR 190 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHH
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHH
Confidence 3344 46777789999999999984333 24445677777777765322 24445566655443322443
Q ss_pred hHHHHHHHHhccC-Cc-------HHHHHHHHHHHHhCCC-----CchHHHHHHHHHHHhcCCHHHHHHHHccCCCCChhh
Q 006705 161 TFATVLTSCAGAF-GF-------ELGKQIHSLIIKSNFE-----SHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227 (634)
Q Consensus 161 t~~~ll~~~~~~~-~~-------~~a~~~~~~~~~~g~~-----~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~ 227 (634)
..-.+|..|--.. .. +.-.-+.=.+++..-. .+..++..|-+...+-| .+.|.. ..+...
T Consensus 191 AvY~ilg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~G-----e~~F~~--~~~p~~ 263 (613)
T PF04097_consen 191 AVYKILGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYG-----ESHFNA--GSNPLL 263 (613)
T ss_dssp HHHHHHHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH------GGGCTT--------
T ss_pred HHHHHHhcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhc-----hhhccc--chhHHH
Confidence 2222333232211 11 1111111111222111 11223332222222111 233333 223333
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcC-CCCchhHHHHHHHHHH
Q 006705 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE-IPSYVVLQNSLIDMYS 306 (634)
Q Consensus 228 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~-~~~~~~~~~~li~~~~ 306 (634)
| ...+.-.|+++.|++.+.+ ..+...|.+.+...+..+.-..-.+... ..+.... -.+...-+..||..|.
T Consensus 264 Y---f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~ 335 (613)
T PF04097_consen 264 Y---FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYT 335 (613)
T ss_dssp H---HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHH
T ss_pred H---HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHH
Confidence 3 2344568999999998877 3345667777777666554332222111 2221111 0111134556666666
Q ss_pred h---cCCHHHHHHHHhhcC
Q 006705 307 K---CGSLTYSRRVFDNMS 322 (634)
Q Consensus 307 ~---~g~~~~A~~~f~~m~ 322 (634)
+ ..+..+|.+.|--+.
T Consensus 336 ~~F~~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 336 RSFEITDPREALQYLYLIC 354 (613)
T ss_dssp HTTTTT-HHHHHHHHHGGG
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 5 345566666555443
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=92.54 E-value=4.5 Score=42.65 Aligned_cols=161 Identities=11% Similarity=0.006 Sum_probs=102.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH-----HHHHHHHHHHhc----cCcHHHHHHHHHHhhhccCCccCCh
Q 006705 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDS-----VTYLAVLSGCSH----GGMEDRGLAVFHEIVDCKDGFEPEI 399 (634)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~-----~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~p~~ 399 (634)
...+++...-.|+-+.+++++.+..+..++.-.. .+|..++..+.. ....+.+.++++.+.+.| |+.
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y----P~s 266 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY----PNS 266 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC----CCc
Confidence 3445555556677777777777665543333222 123333333332 456788999999998653 554
Q ss_pred HHHHH-HHHHHHHcCCHHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHH-HH
Q 006705 400 EHYGC-VVDMLGRAGRVGEALEFIKNMPF-E-----PTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYV-IL 471 (634)
Q Consensus 400 ~~~~~-li~~~~~~g~~~~A~~~~~~m~~-~-----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~-~l 471 (634)
..|.. -...+...|++++|++.|++.-. + -....+--+...+....++++|...+..+.+...-+...|. ..
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 44433 34566678999999999986521 1 11223334556677888999999999998886655444554 44
Q ss_pred HHHHhhcCCc-------HHHHHHHHHHhh
Q 006705 472 SNLYASAGRW-------EDVTRVRELMKE 493 (634)
Q Consensus 472 ~~~~~~~g~~-------~~A~~~~~~m~~ 493 (634)
+-+|...|+. ++|.+++++...
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 5556778888 888888888754
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.22 E-value=37 Score=42.08 Aligned_cols=310 Identities=12% Similarity=0.061 Sum_probs=166.9
Q ss_pred HHHhccCCcHHHHHHHHHHHHhCC--CCchHHHHHHHHHHHhcCCHHHHHHHHc-cCCCCChhhHHHHHHHHHhcCChHH
Q 006705 167 TSCAGAFGFELGKQIHSLIIKSNF--ESHIYVGSSLLDMYAKAGRIHEARGVFE-CLPERDVVSCTAIISGYAQLGLDEE 243 (634)
Q Consensus 167 ~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~~~-~m~~~~~~~~~~li~~~~~~g~~~~ 243 (634)
.+-.+.+.+..|...++.-..... ......+-.+...|+.-+++|...-+.. ....++. ..-|.-....|++..
T Consensus 1391 ~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~~~d 1467 (2382)
T KOG0890|consen 1391 RASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGNWAD 1467 (2382)
T ss_pred HHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhccHHH
Confidence 344455666666666665210000 1122334445557888888777766665 2333322 234445667889999
Q ss_pred HHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHH-HHHHHhcCCHHHHHHHHhhcC
Q 006705 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL-IDMYSKCGSLTYSRRVFDNMS 322 (634)
Q Consensus 244 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~f~~m~ 322 (634)
|...|+++.+.+ ++...+++-++......+.+....-..+..... ..+...-++++ +.+--+.++++.......
T Consensus 1468 a~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~--- 1542 (2382)
T KOG0890|consen 1468 AAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS--- 1542 (2382)
T ss_pred HHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh---
Confidence 999999998764 333667777777766677766665543333322 23333333332 444466677766666555
Q ss_pred CCChhhHHHH-H-HHHHhcC--ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHH----------HHh
Q 006705 323 ERTVISWNAM-L-VGYSKHG--MGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVF----------HEI 388 (634)
Q Consensus 323 ~~~~~~~~~l-i-~~~~~~g--~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~----------~~~ 388 (634)
..+..+|.+. + ..+.+.. +.-.-.+..+.+++. -+.| +.+|+..|.+..+.++. ...
T Consensus 1543 ~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~-~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~ 1613 (2382)
T KOG0890|consen 1543 DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSREL-VIEN--------LSACSIEGSYVRSYEILMKLHLLLELENSI 1613 (2382)
T ss_pred cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHH-hhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677665 2 2222222 222222344444443 1111 22333333222221111 111
Q ss_pred hhccCCccCCh------HHHHHHHHHHHHcCCHHHHHHHHHhC----CCCC-----CHHHHHHHHHHHHhcCCchHHHHH
Q 006705 389 VDCKDGFEPEI------EHYGCVVDMLGRAGRVGEALEFIKNM----PFEP-----TAAILGSLLGACRVHYNVDIGEFV 453 (634)
Q Consensus 389 ~~~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-----~~~~~~~ll~~~~~~~~~~~a~~~ 453 (634)
.... ++.++. .-|..-+..=....+..+-+--+++. ...| -..+|-.....++..|.++.|..+
T Consensus 1614 ~~l~-~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1614 EELK-KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred HHhh-ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 1111 233321 22222222111111222222112211 1122 245788899999999999999998
Q ss_pred HHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCCC
Q 006705 454 GQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496 (634)
Q Consensus 454 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 496 (634)
.-.+.+..+ +..+.-.+..+...|+-..|..++++..+...
T Consensus 1693 ll~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1693 LLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 888888775 47899999999999999999999999876543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.19 E-value=1.2 Score=44.21 Aligned_cols=96 Identities=16% Similarity=0.063 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 006705 399 IEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYA 476 (634)
Q Consensus 399 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 476 (634)
..++..|.-.|.+.+++.+|+..-.+. .. ++|+...--=..++...++++.|+..++++++++|.|-.+-.-|+.+--
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345667778888999999998887775 22 4566666566688899999999999999999999999877777877777
Q ss_pred hcCCcHHH-HHHHHHHhhC
Q 006705 477 SAGRWEDV-TRVRELMKEK 494 (634)
Q Consensus 477 ~~g~~~~A-~~~~~~m~~~ 494 (634)
+....++. .++|..|-.+
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 66665554 7888888543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=92.08 E-value=6.6 Score=40.18 Aligned_cols=145 Identities=7% Similarity=0.068 Sum_probs=95.5
Q ss_pred hHHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHh---------ccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHH
Q 006705 342 GREVVELFNLMREENKVKPDSV-TYLAVLSGCS---------HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411 (634)
Q Consensus 342 ~~~A~~~~~~m~~~~g~~pd~~-t~~~ll~a~~---------~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 411 (634)
.+.|+.+|.+........|+.. .|..+..++. ...+..+|.+.-+...+.. +-|......+..++.-
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld---~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT---TVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHh
Confidence 4578888888873324566653 3333222211 1234556777777776531 3467777777777788
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCch--HHHHHHHHhhcCCcHHHHHH
Q 006705 412 AGRVGEALEFIKNM-PFEPT-AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGN--YVILSNLYASAGRWEDVTRV 487 (634)
Q Consensus 412 ~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~--~~~l~~~~~~~g~~~~A~~~ 487 (634)
.|+++.|..+|++. ...|| ..+|......+.-.|+.++|....++.++++|..... ....+++|+.. .+++|.++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHH
Confidence 88899999999987 44555 4456666666778899999999999999999984332 33455566664 46777776
Q ss_pred HHH
Q 006705 488 REL 490 (634)
Q Consensus 488 ~~~ 490 (634)
+-+
T Consensus 430 ~~~ 432 (458)
T PRK11906 430 YYK 432 (458)
T ss_pred Hhh
Confidence 654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.88 E-value=10 Score=34.79 Aligned_cols=165 Identities=14% Similarity=0.086 Sum_probs=96.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC-hhhHHHHHH-HHHhcCChHHHHHHHHHHHHcCCC--CCCHHHHHHH
Q 006705 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSE--RT-VISWNAMLV-GYSKHGMGREVVELFNLMREENKV--KPDSVTYLAV 368 (634)
Q Consensus 295 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~-~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~g~--~pd~~t~~~l 368 (634)
...+..+...+...+....+.+.+..... ++ ...+..... .+...|++++|...|.+.... .. ......+...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~ 173 (291)
T COG0457 95 AEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALEL-DPELNELAEALLAL 173 (291)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHh
Confidence 33344444444555555555555555443 11 122222223 567777788888877777442 11 1123334444
Q ss_pred HHHHhccCcHHHHHHHHHHhhhccCCccC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 006705 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEP-EIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPT-AAILGSLLGACRVHY 445 (634)
Q Consensus 369 l~a~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~ 445 (634)
...+...++.+.+...+...... ... ....+..+...+...+.+++|...+... ...|+ ...+..+...+...+
T Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (291)
T COG0457 174 GALLEALGRYEEALELLEKALKL---NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELG 250 (291)
T ss_pred hhHHHHhcCHHHHHHHHHHHHhh---CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcC
Confidence 44456677788888888877753 233 3566777777777888888888877765 32333 344444445555666
Q ss_pred CchHHHHHHHHHhccCCC
Q 006705 446 NVDIGEFVGQRLMEIEPE 463 (634)
Q Consensus 446 ~~~~a~~~~~~~~~~~p~ 463 (634)
..+.+.....+..+..|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 251 RYEEALEALEKALELDPD 268 (291)
T ss_pred CHHHHHHHHHHHHHhCcc
Confidence 678888888888877775
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.83 E-value=13 Score=36.06 Aligned_cols=119 Identities=11% Similarity=0.084 Sum_probs=51.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 006705 294 YVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHG-MGREVVELFNLMREENKVKPDSVTYLAVLSGC 372 (634)
Q Consensus 294 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~ 372 (634)
+..+-...+.++++.|+.+....+..-+..+|...-..-+.++.+.+ ...++...+..+... +|...-...+.++
T Consensus 141 ~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D----~~~~VR~~A~~aL 216 (280)
T PRK09687 141 STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQD----KNEEIRIEAIIGL 216 (280)
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC----CChHHHHHHHHHH
Confidence 44444455555555555333333333333444443344444444432 133444444444432 3444455555555
Q ss_pred hccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006705 373 SHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425 (634)
Q Consensus 373 ~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 425 (634)
.+.|+. .+...+-...+. + + .....+.+++..|.. +|...+.++
T Consensus 217 g~~~~~-~av~~Li~~L~~--~---~--~~~~a~~ALg~ig~~-~a~p~L~~l 260 (280)
T PRK09687 217 ALRKDK-RVLSVLIKELKK--G---T--VGDLIIEAAGELGDK-TLLPVLDTL 260 (280)
T ss_pred HccCCh-hHHHHHHHHHcC--C---c--hHHHHHHHHHhcCCH-hHHHHHHHH
Confidence 555553 333333333321 1 1 123445555555553 344444443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.65 E-value=5.6 Score=43.36 Aligned_cols=111 Identities=13% Similarity=0.079 Sum_probs=57.0
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCH
Q 006705 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415 (634)
Q Consensus 336 ~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 415 (634)
+.+.|++++|...|-+-... +.|.. ++.-|.....+.+-..+++.+.+. |+. +..+-+.|+.+|.+.++.
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~~--le~s~-----Vi~kfLdaq~IknLt~YLe~L~~~--gla-~~dhttlLLncYiKlkd~ 447 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIGF--LEPSE-----VIKKFLDAQRIKNLTSYLEALHKK--GLA-NSDHTTLLLNCYIKLKDV 447 (933)
T ss_pred HHhcCCHHHHHHHHHHHccc--CChHH-----HHHHhcCHHHHHHHHHHHHHHHHc--ccc-cchhHHHHHHHHHHhcch
Confidence 34556666666666554432 33322 233444455555555566666554 433 445556666666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHH
Q 006705 416 GEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQR 456 (634)
Q Consensus 416 ~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 456 (634)
+.-.++++..+...-..-....+..|+..+-.++|..+..+
T Consensus 448 ~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 448 EKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 66666666553100011123445555555555555555444
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.64 E-value=11 Score=34.89 Aligned_cols=46 Identities=13% Similarity=0.280 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006705 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354 (634)
Q Consensus 297 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (634)
.++--..+|..+|.++.|...+++.-+ ...+-++++|+++|++...
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqrala 138 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALA 138 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHH
Confidence 344555667777776666555544321 1234456666666655443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.57 E-value=6.8 Score=33.90 Aligned_cols=90 Identities=17% Similarity=0.110 Sum_probs=59.8
Q ss_pred HHHhccCcHHHHHHHHHHhhhccCCccCCh-HHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCc
Q 006705 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEI-EHYGCVVDMLGRAGRVGEALEFIKNMP-FEPTAAILGSLLGACRVHYNV 447 (634)
Q Consensus 370 ~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~~~ 447 (634)
+.-...++.+++..++..+. -+.|.. ..-..-...+.+.|++.+|..+|+++. ..|....-.+|+..|.....-
T Consensus 18 ~~al~~~~~~D~e~lL~ALr----vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALR----VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHccCChHHHHHHHHHHH----HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 33456778888888888887 345543 233334455678899999999999983 235555556777777666655
Q ss_pred hHHHHHHHHHhccCCC
Q 006705 448 DIGEFVGQRLMEIEPE 463 (634)
Q Consensus 448 ~~a~~~~~~~~~~~p~ 463 (634)
..-....+.+++..++
T Consensus 94 ~~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 94 PSWRRYADEVLESGAD 109 (160)
T ss_pred hHHHHHHHHHHhcCCC
Confidence 5556666666666654
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.27 E-value=9.9 Score=37.17 Aligned_cols=134 Identities=12% Similarity=0.171 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhhcCCccChhhHHHHHHHHhc--c----cchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 006705 242 EEAIELFRKLQVEGMISNYVTYASVLTALSG--L----AALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR 315 (634)
Q Consensus 242 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~----~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 315 (634)
++.+.+++.|.+.|.+-+..+|.+....... . .....+..+|..|.+...-.+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT--------------------- 137 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT--------------------- 137 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc---------------------
Confidence 4556788888999888888877664433322 1 123445666666665432100
Q ss_pred HHHhhcCCCChhhHHHHHHHHHhcCC----hHHHHHHHHHHHHcCCCCCCH--HHHHHHHHHHhccCc--HHHHHHHHHH
Q 006705 316 RVFDNMSERTVISWNAMLVGYSKHGM----GREVVELFNLMREENKVKPDS--VTYLAVLSGCSHGGM--EDRGLAVFHE 387 (634)
Q Consensus 316 ~~f~~m~~~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~~g~~pd~--~t~~~ll~a~~~~g~--~~~a~~~~~~ 387 (634)
.++-.++.+|+.. ..++ .+.+..+|+.+.+. |+..+. .....+|..+..... ..++.++++.
T Consensus 138 -------s~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~-~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~ 207 (297)
T PF13170_consen 138 -------SPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADA-GFKKGNDLQFLSHILALSEGDDQEKVARVIELYNA 207 (297)
T ss_pred -------CccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHh-CCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 0122233333222 1111 34567777888776 666543 334444444333222 3467788888
Q ss_pred hhhccCCccCChHHHHHHHHH
Q 006705 388 IVDCKDGFEPEIEHYGCVVDM 408 (634)
Q Consensus 388 ~~~~~~~~~p~~~~~~~li~~ 408 (634)
+.+. ++++...+|..+.-+
T Consensus 208 l~~~--~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 208 LKKN--GVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHc--CCccccccccHHHHH
Confidence 8876 888887777765443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.11 E-value=15 Score=35.26 Aligned_cols=117 Identities=12% Similarity=0.082 Sum_probs=52.0
Q ss_pred ccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCchHH
Q 006705 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGS---LLGACRVHYNVDIG 450 (634)
Q Consensus 374 ~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~---ll~~~~~~~~~~~a 450 (634)
..|+..++...|+..... .+-+...--.|+..|...|+.++|..++..+|..-...-|.. -|....+.....+.
T Consensus 146 ~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 146 EAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 344444455544444432 111233344445555555555555555555543222222222 11222222222221
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 451 EFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 451 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
.. ++.-...+|+|...-..|...|...|+.++|.+.+-.+.++
T Consensus 223 ~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 223 QD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11 22233445666666666666666666666666655555433
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.70 E-value=17 Score=35.28 Aligned_cols=74 Identities=5% Similarity=-0.022 Sum_probs=38.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Q 006705 294 YVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373 (634)
Q Consensus 294 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~ 373 (634)
+..+-..-+.++++.|+......+.+.+..++ ..-..+.++...|.. +|+..+.++... .||...-...+.+|.
T Consensus 205 ~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~---~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK---FDDNEIITKAIDKLK 278 (280)
T ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh---CCChhHHHHHHHHHh
Confidence 44444445555555555332222333333333 123456667777764 677777777653 346655555555553
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=90.57 E-value=3.5 Score=35.79 Aligned_cols=85 Identities=6% Similarity=-0.015 Sum_probs=39.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCH
Q 006705 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415 (634)
Q Consensus 336 ~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 415 (634)
+.+.|++++|..+|+-+... + .-|..-+..|..+|...+.+++|...|...... . .-|+..+-.....|...|+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~-d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l--~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIY-D-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL--L-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHh-C-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--c-cCCCCccchHHHHHHHhCCH
Confidence 33455555555555554443 1 112223344444445555555555555554432 1 11222233344555555666
Q ss_pred HHHHHHHHhC
Q 006705 416 GEALEFIKNM 425 (634)
Q Consensus 416 ~~A~~~~~~m 425 (634)
+.|+..|...
T Consensus 122 ~~A~~~f~~a 131 (165)
T PRK15331 122 AKARQCFELV 131 (165)
T ss_pred HHHHHHHHHH
Confidence 6665555544
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=90.45 E-value=4.7 Score=41.19 Aligned_cols=117 Identities=10% Similarity=0.055 Sum_probs=84.5
Q ss_pred cHHHHHHHHHHhhhccCCccCC-hHHHHHHHHHHHH---------cCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhc
Q 006705 377 MEDRGLAVFHEIVDCKDGFEPE-IEHYGCVVDMLGR---------AGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVH 444 (634)
Q Consensus 377 ~~~~a~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~ 444 (634)
..+.|..+|.+..... .+.|+ ...|..+...+.. .....+|.++-++. .. +.|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~-~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKS-DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcc-cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Confidence 3567788888888433 45665 3344444333321 22344566666554 22 34667777777777788
Q ss_pred CCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 445 YNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 445 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
++.+.|...++++..++|+.+.+|...+..+.-+|+.++|.+.+++..+.
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 88999999999999999999999999999999999999999999986543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.32 E-value=6.6 Score=33.29 Aligned_cols=55 Identities=9% Similarity=0.145 Sum_probs=23.8
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhc
Q 006705 337 SKHGMGREVVELFNLMREENKVKP-DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391 (634)
Q Consensus 337 ~~~g~~~~A~~~~~~m~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 391 (634)
.+.|++++|.+.|+.+.......| ....-..++.++.+.+++++|...++..++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 344555555555555544311111 1133344444455555555555555554443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.26 E-value=14 Score=33.60 Aligned_cols=162 Identities=15% Similarity=0.073 Sum_probs=84.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHH
Q 006705 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD-SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404 (634)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 404 (634)
...||-+.--+...|+++.|.+.|+...+. .|. ..++..-.-++.-.|++..|.+=+...-... .-.|-...|-.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL---Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D-~~DPfR~LWLY 174 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL---DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD-PNDPFRSLWLY 174 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhcc---CCcchHHHhccceeeeecCchHhhHHHHHHHHhcC-CCChHHHHHHH
Confidence 346666666677777777777777777654 222 2222222223444567776665544443321 22232233322
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC-------CchHHHHHHHHhh
Q 006705 405 VVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN-------AGNYVILSNLYAS 477 (634)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~ 477 (634)
++. +.-++.+|..-+.+--...|..-|...|-.+....-.++ .+++++.....++ .++|.-|+.-|..
T Consensus 175 l~E---~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e--~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~ 249 (297)
T COG4785 175 LNE---QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEE--TLMERLKADATDNTSLAEHLTETYFYLGKYYLS 249 (297)
T ss_pred HHH---hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHH--HHHHHHHhhccchHHHHHHHHHHHHHHHHHHhc
Confidence 222 233455555433322113455566655544332221111 1222222221121 3678899999999
Q ss_pred cCCcHHHHHHHHHHhhCCC
Q 006705 478 AGRWEDVTRVRELMKEKAV 496 (634)
Q Consensus 478 ~g~~~~A~~~~~~m~~~~~ 496 (634)
.|..++|..+|+.....++
T Consensus 250 ~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 250 LGDLDEATALFKLAVANNV 268 (297)
T ss_pred cccHHHHHHHHHHHHHHhH
Confidence 9999999999998865443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.26 E-value=0.41 Score=29.04 Aligned_cols=31 Identities=19% Similarity=0.063 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhccCCC
Q 006705 433 ILGSLLGACRVHYNVDIGEFVGQRLMEIEPE 463 (634)
Q Consensus 433 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 463 (634)
+|..+...+...|++++|...++++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4555566666666666666666666666664
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.25 E-value=2 Score=35.36 Aligned_cols=53 Identities=13% Similarity=0.139 Sum_probs=27.4
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 006705 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390 (634)
Q Consensus 336 ~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 390 (634)
++..|+.+.|++.|.+.... .+-+...|+.-..++.-.|+.++|+.=+++..+
T Consensus 53 laE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 44555555555555555543 233445555555555555555555555555544
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.22 E-value=6 Score=33.51 Aligned_cols=51 Identities=10% Similarity=-0.059 Sum_probs=22.1
Q ss_pred ccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q 006705 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKN 424 (634)
Q Consensus 374 ~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 424 (634)
+.|++++|.+.|+.+...++.-+-....--.|+.+|.+.|++++|...+++
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~r 72 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDR 72 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 345555555555555544321111233333444444444444444444433
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.21 E-value=5.4 Score=37.68 Aligned_cols=95 Identities=19% Similarity=0.148 Sum_probs=61.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHH
Q 006705 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS---VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404 (634)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 404 (634)
.|+.-+..| +.|++.+|...|..-.+. .+-+. ..+--|..++...|++++|..+|..+.+.++.-+--++.+-.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 366655543 456677888877777765 21111 234456677777778888877777777766333334567777
Q ss_pred HHHHHHHcCCHHHHHHHHHhC
Q 006705 405 VVDMLGRAGRVGEALEFIKNM 425 (634)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~m 425 (634)
|.....+.|+.++|...+++.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHH
Confidence 777777777777777777765
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=89.81 E-value=15 Score=36.90 Aligned_cols=92 Identities=11% Similarity=0.103 Sum_probs=66.0
Q ss_pred CccCChHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCC----CCchH
Q 006705 394 GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP-FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE----NAGNY 468 (634)
Q Consensus 394 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~ 468 (634)
...++..++..++..-. .++..+. ......+|..+...+++.|+++.|...+.++....+. .+...
T Consensus 117 ~~~~~~~~~~~il~~R~---------~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~ 187 (352)
T PF02259_consen 117 NMQDDFSVWEPILSLRR---------LVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVF 187 (352)
T ss_pred HhccchHHHHHHHHHHH---------HHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchH
Confidence 45667777766654311 1111111 1335568899999999999999999999998886532 34566
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 469 VILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 469 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
..-+..+...|+-.+|...++...+.
T Consensus 188 ~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 188 LEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77788999999999999999888763
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.74 E-value=3.6 Score=39.75 Aligned_cols=115 Identities=10% Similarity=0.034 Sum_probs=92.7
Q ss_pred ccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHH---HHH-HHHHHhcCCc
Q 006705 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAIL---GSL-LGACRVHYNV 447 (634)
Q Consensus 374 ~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~---~~l-l~~~~~~~~~ 447 (634)
..|+..+|...++++.+ ..+.|...++-.=+++.-.|+.+.-...|+++ |. .||...| +.+ .-+....|-+
T Consensus 115 ~~g~~h~a~~~wdklL~---d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLD---DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHH---hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 45777888888899987 45778888888889999999999988888887 43 5565333 223 2445678999
Q ss_pred hHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHH
Q 006705 448 DIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELM 491 (634)
Q Consensus 448 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 491 (634)
++|++..+++.+++|.|.-+...+..++--.|+..++.++..+-
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 99999999999999998888888999999999999999887655
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.57 E-value=31 Score=36.50 Aligned_cols=183 Identities=14% Similarity=0.091 Sum_probs=122.8
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 006705 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER---TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369 (634)
Q Consensus 293 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll 369 (634)
++..+|+..++--.+.|+.+.+.-+|++...| =..-|--.+.-....|+.+-|-.++....+- -++-.+.+-..-.
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i-~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKI-HVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhh-cCCCCcHHHHHHH
Confidence 45678888888889999999999999988765 2344555555555558888888777666554 2322222222222
Q ss_pred HHHhccCcHHHHHHHHHHhhhccCCccCC-hHHHHHHHHHHHHcCCHHHHH---HHHHhC-CCCCCHHHHHHHH-----H
Q 006705 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPE-IEHYGCVVDMLGRAGRVGEAL---EFIKNM-PFEPTAAILGSLL-----G 439 (634)
Q Consensus 370 ~a~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~~~~~~ll-----~ 439 (634)
.-+-..|+.+.|..+++.+.+. . |+ ...-..-+.+..+.|..+.+. .++... +.+-+......+. -
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e---~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESE---Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARL 449 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhh---C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHH
Confidence 2255678999999999999975 3 43 333334456677888888887 555443 2222322333222 2
Q ss_pred HHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCC
Q 006705 440 ACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480 (634)
Q Consensus 440 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 480 (634)
-+...++.+.|..++.++.+..|++...|..+++.....+.
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 34556788999999999999999998899999888776653
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.51 E-value=6.6 Score=34.26 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=22.4
Q ss_pred cCCChHHHHHHHhhcCCCCcchHHHHH-----HHHHhCCChhHHHHHHHHHHHC
Q 006705 105 KCECLSDARKMFDEMRERNVVSWTAMI-----SAYSQKAHSFEALNLFIRMLRS 153 (634)
Q Consensus 105 ~~g~~~~A~~~~~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~ 153 (634)
+.+..++|...|..+.+.+--+|-.|. ....+.|+...|+..|++.-..
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d 123 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD 123 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence 344455555555555443333333322 2234445555555555555443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=89.51 E-value=31 Score=36.43 Aligned_cols=155 Identities=17% Similarity=0.072 Sum_probs=73.2
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHC-CCCCCh-----hhHHHHHHHHhc----cCCcHHHHHHHHHHHHhCCCCchHHH-
Q 006705 129 AMISAYSQKAHSFEALNLFIRMLRS-DTEPNE-----FTFATVLTSCAG----AFGFELGKQIHSLIIKSNFESHIYVG- 197 (634)
Q Consensus 129 ~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~-----~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~- 197 (634)
.+++...=.|+-+.+++.+.+-.+. ++.-.. .+|..++..+.. ..+.+.+.+++..+.+. -|+...|
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 3444444556666666666554432 121110 122222222222 34555666666666654 2333222
Q ss_pred HHHHHHHHhcCCHHHHHHHHccCCCC-------ChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHH
Q 006705 198 SSLLDMYAKAGRIHEARGVFECLPER-------DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL 270 (634)
Q Consensus 198 ~~li~~y~~~g~~~~A~~~~~~m~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 270 (634)
---...+...|++++|.+.|+..... ....+--+.-.+.-..++++|.+.|.++.+.. .....+|.-+..+|
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 22334555667777777777654321 11122233444555667777777777776542 23333444333333
Q ss_pred -hcccch-------HHHHHHHHHH
Q 006705 271 -SGLAAL-------GHGKQVHSHV 286 (634)
Q Consensus 271 -~~~~~~-------~~a~~i~~~~ 286 (634)
...++. ++|.+++..+
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHH
Confidence 233444 5555555544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.47 E-value=19 Score=33.87 Aligned_cols=56 Identities=9% Similarity=0.039 Sum_probs=42.0
Q ss_pred HHHHHhcCCchHHHHHHHHHhccCCCCC---chHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 438 LGACRVHYNVDIGEFVGQRLMEIEPENA---GNYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 438 l~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
..-|.+.|.+..|..-++.+++--|+.. ..+..|..+|...|..++|.+.-+-+..
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 3567788888888877888777655533 3456788889999999999988777654
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.34 E-value=0.74 Score=27.74 Aligned_cols=30 Identities=17% Similarity=-0.013 Sum_probs=15.4
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhccCCC
Q 006705 434 LGSLLGACRVHYNVDIGEFVGQRLMEIEPE 463 (634)
Q Consensus 434 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 463 (634)
|..+...+...|++++|...++++++++|+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 444445555555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=89.08 E-value=12 Score=31.12 Aligned_cols=63 Identities=11% Similarity=0.177 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCc
Q 006705 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF 395 (634)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 395 (634)
.+.-+..+...|+-++-.+++.++.+. -.|++.....+..||.+.|+..++.+++.+.-+. |+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn--~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek--G~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN--EEINPEFLVKIANAYKKLGNTREANELLKEACEK--GL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT--T-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh--ch
Confidence 344566677788888777787777653 3567777777888888888888888888877765 54
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=88.46 E-value=34 Score=35.50 Aligned_cols=159 Identities=11% Similarity=0.112 Sum_probs=113.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 006705 226 VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMY 305 (634)
Q Consensus 226 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~ 305 (634)
...-+++..+.++-.+.-...+..+|..-| .+...|..++..|... ..+.-..+++++++..+. |++...-|++.|
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~y 142 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKY 142 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHH
Confidence 345567778888888888888888888754 4667788888888777 556677788888877643 455556677777
Q ss_pred HhcCCHHHHHHHHhhcCCCCh---------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccC
Q 006705 306 SKCGSLTYSRRVFDNMSERTV---------ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376 (634)
Q Consensus 306 ~~~g~~~~A~~~f~~m~~~~~---------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g 376 (634)
-+ ++.+.+...|.++..+-+ ..|.-++..- ..+.+..+.+...++...|..--.+.+--+-.-|....
T Consensus 143 Ek-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 76 888888888887653211 2566665422 34567777777777776566666677777778889999
Q ss_pred cHHHHHHHHHHhhhc
Q 006705 377 MEDRGLAVFHEIVDC 391 (634)
Q Consensus 377 ~~~~a~~~~~~~~~~ 391 (634)
++++|.+++..+.+.
T Consensus 220 N~~eai~Ilk~il~~ 234 (711)
T COG1747 220 NWTEAIRILKHILEH 234 (711)
T ss_pred CHHHHHHHHHHHhhh
Confidence 999999999877764
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.43 E-value=1.2 Score=28.95 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC
Q 006705 401 HYGCVVDMLGRAGRVGEALEFIKNM 425 (634)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~m 425 (634)
++..+...|.+.|++++|++++++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~ 27 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRA 27 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4555666666666666666666665
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.41 E-value=0.78 Score=28.37 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=21.6
Q ss_pred hHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 467 NYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 467 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
+|..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46789999999999999999999853
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.34 E-value=3.1 Score=39.82 Aligned_cols=76 Identities=9% Similarity=0.151 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCCHHHHH
Q 006705 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSER---TVISWNAMLVGYSKHGMGREVVELFNLMRE-----ENKVKPDSVTYL 366 (634)
Q Consensus 295 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~g~~pd~~t~~ 366 (634)
..++..++..+..+|+.+.+...+++.... |...|..++.+|.+.|+...|+..|+++.+ . |+.|-..+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edl-gi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEEL-GIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhc-CCCccHHHHH
Confidence 345677888888899999988888887643 667899999999999999999998887765 3 6777766655
Q ss_pred HHHHH
Q 006705 367 AVLSG 371 (634)
Q Consensus 367 ~ll~a 371 (634)
....+
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 54444
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.33 E-value=17 Score=31.93 Aligned_cols=133 Identities=12% Similarity=0.034 Sum_probs=72.0
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchH-HHHHHHHHHHhc-CCHHHHHHHHccCC
Q 006705 144 LNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIY-VGSSLLDMYAKA-GRIHEARGVFECLP 221 (634)
Q Consensus 144 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~y~~~-g~~~~A~~~~~~m~ 221 (634)
++.++.+...+++|+...+..++..+.+.|.+..-.+ ++..++-+|.. +...|++.-.+. .-..-|.+.+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 3555666667777777778888888877777554333 33444444433 333333221111 01223344444433
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHH
Q 006705 222 ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288 (634)
Q Consensus 222 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 288 (634)
..+..++..+...|++-+|+++.+..... +......++.+..+.++...-..++....+
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 24556667778888888888877665321 222334556666666665555555554444
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.81 E-value=40 Score=35.67 Aligned_cols=119 Identities=16% Similarity=0.032 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-----CCCCCHHHHHH
Q 006705 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-----PFEPTAAILGS 436 (634)
Q Consensus 362 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~p~~~~~~~ 436 (634)
..+|...+.--...|+.+...-+|+...- ....-.+.|-..+.-....|+.+-|..++... +..|......+
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli---~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLI---PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHh---HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 35666666666677777777777766653 22333455555666666667777777666554 11233222222
Q ss_pred HHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHH
Q 006705 437 LLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVT 485 (634)
Q Consensus 437 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 485 (634)
..+-..|+...|..+++.+.+--|.....-..-+++..+.|+.+.+.
T Consensus 374 --~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 374 --RFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred --HHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 22345567888888877777655665555555666667777777776
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=87.78 E-value=30 Score=35.79 Aligned_cols=99 Identities=9% Similarity=0.019 Sum_probs=67.1
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCCC--CCC--HHHHHHHHHHH
Q 006705 366 LAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPF--EPT--AAILGSLLGAC 441 (634)
Q Consensus 366 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~p~--~~~~~~ll~~~ 441 (634)
..+..++-+.|+.++|.+.+++|.+.+ .......+...|+..|...+++.++..++.+-.. -|. ...|++.+--.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLka 341 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKA 341 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence 445666778899999999999998753 2222455677899999999999999999988731 233 34566555444
Q ss_pred HhcCCc---------------hHHHHHHHHHhccCCCCC
Q 006705 442 RVHYNV---------------DIGEFVGQRLMEIEPENA 465 (634)
Q Consensus 442 ~~~~~~---------------~~a~~~~~~~~~~~p~~~ 465 (634)
+.-++. ..|.++..++.+.+|..+
T Consensus 342 Rav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 342 RAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 433331 124566778888888744
|
The molecular function of this protein is uncertain. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.60 E-value=24 Score=32.84 Aligned_cols=198 Identities=14% Similarity=0.104 Sum_probs=106.0
Q ss_pred HHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC--hhhHHHHHHHHHhcCChH
Q 006705 266 VLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT--VISWNAMLVGYSKHGMGR 343 (634)
Q Consensus 266 ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~--~~~~~~li~~~~~~g~~~ 343 (634)
.-.+|-...+++++...+....+. .+.+...|.+ ...++.|.-+.++|.+-+ +..|+--...|.++|.++
T Consensus 37 AAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspd 108 (308)
T KOG1585|consen 37 AAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPD 108 (308)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcc
Confidence 344555566666666655544421 1112211111 122344444455554322 234566677899999888
Q ss_pred HHHHHHHHHHHc-CCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHH
Q 006705 344 EVVELFNLMREE-NKVKPDSV--TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420 (634)
Q Consensus 344 ~A~~~~~~m~~~-~g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 420 (634)
-|-..+++.-+. ..+.||.. .|.--+......++...| .+.|......|.+..+++||-.
T Consensus 109 tAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma-----------------~el~gk~sr~lVrl~kf~Eaa~ 171 (308)
T KOG1585|consen 109 TAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMA-----------------FELYGKCSRVLVRLEKFTEAAT 171 (308)
T ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHH-----------------HHHHHHhhhHhhhhHHhhHHHH
Confidence 777666554321 03566542 222222222222222222 3445556667778888888776
Q ss_pred HHHhCC-------CCCCH-HHHHHHHHHHHhcCCchHHHHHHHHHhcc----CCCCCchHHHHHHHHhhcCCcHHHHHHH
Q 006705 421 FIKNMP-------FEPTA-AILGSLLGACRVHYNVDIGEFVGQRLMEI----EPENAGNYVILSNLYASAGRWEDVTRVR 488 (634)
Q Consensus 421 ~~~~m~-------~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 488 (634)
.|.+-. .-|+. ..+.+.|-.+....++..|+..++.-.++ .|++..+...|+.+|- .|+.+++.++.
T Consensus 172 a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 172 AFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 665531 11222 23444455555666888888888775543 4556667777877774 57888777765
Q ss_pred H
Q 006705 489 E 489 (634)
Q Consensus 489 ~ 489 (634)
.
T Consensus 251 ~ 251 (308)
T KOG1585|consen 251 S 251 (308)
T ss_pred c
Confidence 3
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.50 E-value=2.3 Score=40.66 Aligned_cols=61 Identities=25% Similarity=0.245 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 433 ILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 433 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
+...++.++...|+.+.+...++++...+|-+...|..++.+|.+.|+...|+..++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4455667777778888888888888889998888999999999999999999999988865
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.42 E-value=10 Score=33.20 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=7.5
Q ss_pred HhcCChHHHHHHHHHHH
Q 006705 337 SKHGMGREVVELFNLMR 353 (634)
Q Consensus 337 ~~~g~~~~A~~~~~~m~ 353 (634)
.+.|+...|...|.++-
T Consensus 105 a~kgdta~AV~aFdeia 121 (221)
T COG4649 105 AQKGDTAAAVAAFDEIA 121 (221)
T ss_pred hhcccHHHHHHHHHHHh
Confidence 33444444444444443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=87.41 E-value=1.3 Score=27.34 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=16.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 006705 328 SWNAMLVGYSKHGMGREVVELFNLMR 353 (634)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~ 353 (634)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666677777777777777776643
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.24 E-value=52 Score=36.35 Aligned_cols=75 Identities=8% Similarity=0.032 Sum_probs=39.7
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhc-cCCCCCchHHHHHHHHhhcCC
Q 006705 405 VVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLME-IEPENAGNYVILSNLYASAGR 480 (634)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~ 480 (634)
++..+....+.+.+..+.+..+. -++..|..++..+.+.+..+.-.+...++++ +...+.-+-..+++++++.+.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~-~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~~ 786 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGK-EDPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNGT 786 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCc-cChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCCc
Confidence 34445556666667666666642 2666777777777777765544433333322 111122222345555555553
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=87.18 E-value=35 Score=34.28 Aligned_cols=66 Identities=11% Similarity=0.083 Sum_probs=44.0
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 006705 324 RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP---DSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390 (634)
Q Consensus 324 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p---d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 390 (634)
....+|..++..+.+.|+++.|...+.++... +..+ +......-....-..|+..+|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~-~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQL-NPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhcc-CCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567888888888888888888888888764 2111 223333334445566777888887777776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=87.11 E-value=11 Score=29.47 Aligned_cols=87 Identities=16% Similarity=0.097 Sum_probs=59.8
Q ss_pred cHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 006705 175 FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE 254 (634)
Q Consensus 175 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 254 (634)
.++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+.+..||...|-+|-. .+.|..+++..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 45555555555544311 33333334456677899999999999999999999988776 4677778788888888877
Q ss_pred CCccChhhHHH
Q 006705 255 GMISNYVTYAS 265 (634)
Q Consensus 255 g~~p~~~t~~~ 265 (634)
| .|...+|..
T Consensus 98 g-~p~lq~Faa 107 (115)
T TIGR02508 98 G-DPRLQTFVA 107 (115)
T ss_pred C-CHHHHHHHH
Confidence 6 555555543
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.51 E-value=32 Score=33.11 Aligned_cols=118 Identities=13% Similarity=0.146 Sum_probs=66.0
Q ss_pred HHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-hhhHH---HHHHHHHhcCChHH
Q 006705 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT-VISWN---AMLVGYSKHGMGRE 344 (634)
Q Consensus 269 ~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~-~~~~~---~li~~~~~~g~~~~ 344 (634)
.....++..++..++....... +-+....-.|..+|...|+.+.|..++..++... ...|- +-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3455667777777777766654 2234555667888888899999988888887431 11121 22333333333333
Q ss_pred HHHHHHHHHHcCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhc
Q 006705 345 VVELFNLMREENKVKP-DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391 (634)
Q Consensus 345 A~~~~~~m~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 391 (634)
...+-.+.-. .| |...-..+...+...|+.+.|.+.+=.+.++
T Consensus 222 ~~~l~~~~aa----dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 222 IQDLQRRLAA----DPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3333333322 24 3344444555566667777666655555544
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=86.05 E-value=12 Score=36.68 Aligned_cols=123 Identities=8% Similarity=0.152 Sum_probs=70.8
Q ss_pred chHHHHHHHHHHHhCCCCChhHHHHHHHHHHc--C----CChHHHHHHHhhcCC-------CCcchHHHHHHHHHhCCCh
Q 006705 74 LRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK--C----ECLSDARKMFDEMRE-------RNVVSWTAMISAYSQKAHS 140 (634)
Q Consensus 74 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~--~----g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~ 140 (634)
++....+++.+.+.|+..+.+++-+-.-.... . -....|..+++.|.+ ++-.++.+|+.. ...++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 55678889999999998888777653333322 1 234567777887765 344456666544 33333
Q ss_pred ----hHHHHHHHHHHHCCCCCChh--hHHHHHHHHhccCC--cHHHHHHHHHHHHhCCCCchHHHH
Q 006705 141 ----FEALNLFIRMLRSDTEPNEF--TFATVLTSCAGAFG--FELGKQIHSLIIKSNFESHIYVGS 198 (634)
Q Consensus 141 ----~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~ 198 (634)
+.+..+|+.+...|+..+.. ..+.+|..+....+ ...+..+++.+.+.|++.....|.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp 221 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYP 221 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccccccc
Confidence 34556677777766655322 33333333322222 235566666777777666555554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.00 E-value=31 Score=32.47 Aligned_cols=54 Identities=19% Similarity=0.049 Sum_probs=24.1
Q ss_pred HHhcCChHHHHHHHHHHhhcCC--ccChhhHHHHHHHHhcccchHHHHHHHHHHHH
Q 006705 235 YAQLGLDEEAIELFRKLQVEGM--ISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288 (634)
Q Consensus 235 ~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 288 (634)
-.+.|++++|.+.|+.+..... +-...+...++-++-+.++++.|....++.++
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ 99 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR 99 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3455666666666666554321 11122333333344444444444444444443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=85.84 E-value=10 Score=33.95 Aligned_cols=58 Identities=14% Similarity=0.106 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCC------hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006705 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERT------VISWNAMLVGYSKHGMGREVVELFNLMRE 354 (634)
Q Consensus 297 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (634)
.+..+.+.|.+.|+.+.|.+.|.++.+.. +..+-.+|......+++..+.....+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44566677777777777777777766532 23455566666666677666666655544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.44 E-value=13 Score=38.99 Aligned_cols=150 Identities=17% Similarity=0.096 Sum_probs=103.1
Q ss_pred hcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 006705 307 KCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFH 386 (634)
Q Consensus 307 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~ 386 (634)
-.|+++.|..++..++++ .-+.++.-+.+.|..++|+++ ...||.. |- ...+.|+++.|.++..
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~--------s~D~d~r-Fe----lal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL--------STDPDQR-FE----LALKLGRLDIAFDLAV 661 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc--------CCChhhh-hh----hhhhcCcHHHHHHHHH
Confidence 457788888877777632 344566667777877777764 2333332 22 2346788998888765
Q ss_pred HhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCc
Q 006705 387 EIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAG 466 (634)
Q Consensus 387 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 466 (634)
+.. +..-|..|.++....|++..|.+.|.+.. -|.+|+-.+...|+.+.-..+.....+.+..|
T Consensus 662 e~~--------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N-- 725 (794)
T KOG0276|consen 662 EAN--------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN-- 725 (794)
T ss_pred hhc--------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc--
Confidence 543 45679999999999999999999998763 36677777778888775555555555544443
Q ss_pred hHHHHHHHHhhcCCcHHHHHHHHHH
Q 006705 467 NYVILSNLYASAGRWEDVTRVRELM 491 (634)
Q Consensus 467 ~~~~l~~~~~~~g~~~~A~~~~~~m 491 (634)
.--.+|...|+++++.+++..-
T Consensus 726 ---~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 726 ---LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ---hHHHHHHHcCCHHHHHHHHHhc
Confidence 3345677889999998887654
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=85.04 E-value=26 Score=30.79 Aligned_cols=134 Identities=13% Similarity=0.162 Sum_probs=83.9
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChh-HHHHHHHHHHcCCChHHHHHHHhhcCCC
Q 006705 44 KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVY-LRTRLIVFYNKCECLSDARKMFDEMRER 122 (634)
Q Consensus 44 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~~~~~~~~ 122 (634)
+.++.+.+.++.|+...|..++..+.+.|.+..-. ++++.++-+|.. +.-.|+..-. ....+.++=-.|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~---~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGN---QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHc---cChHHHHHHHHHHHH
Confidence 44556667889999999999999999988765443 344555444443 4333433222 233344443344443
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHh
Q 006705 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKS 188 (634)
Q Consensus 123 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 188 (634)
=...+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..++....+.
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3335778888999999999999998775322 2233455677777777766666666666553
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.33 E-value=5 Score=35.87 Aligned_cols=88 Identities=13% Similarity=0.071 Sum_probs=63.0
Q ss_pred HHHHHcCCHHHHHHHHHhC-C-CCCC-----HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcC
Q 006705 407 DMLGRAGRVGEALEFIKNM-P-FEPT-----AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479 (634)
Q Consensus 407 ~~~~~~g~~~~A~~~~~~m-~-~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 479 (634)
+-+.+.|++++|..-|... . .++. .+.|..-..+..+.+.++.|..-..++++++|....+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3455667777777666554 1 1111 2233333356677788888888889999999987777777788999999
Q ss_pred CcHHHHHHHHHHhhC
Q 006705 480 RWEDVTRVRELMKEK 494 (634)
Q Consensus 480 ~~~~A~~~~~~m~~~ 494 (634)
++++|++=++.+.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 999999999998765
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=83.89 E-value=2.1 Score=26.09 Aligned_cols=30 Identities=23% Similarity=0.275 Sum_probs=18.9
Q ss_pred HHHHhCCCCchHHHHHHHHHHHhcCCHHHHH
Q 006705 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214 (634)
Q Consensus 184 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 214 (634)
++++.. |.+..+|+.|...|...|++++|+
T Consensus 4 kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344443 456667777777777777777664
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=83.87 E-value=54 Score=33.49 Aligned_cols=142 Identities=15% Similarity=0.195 Sum_probs=104.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHH-HHHH
Q 006705 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSE-----RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVT-YLAV 368 (634)
Q Consensus 295 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t-~~~l 368 (634)
..+|..+++.-.+..-++.|+.+|-+..+ +++..++++|.-++ .|+..-|..+|+--... -||... ..-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHH
Confidence 45677788888888889999999998874 57889999999776 56778899999876654 355533 3445
Q ss_pred HHHHhccCcHHHHHHHHHHhhhccCCccCC--hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 006705 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEPE--IEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTAAILGSLLGACRV 443 (634)
Q Consensus 369 l~a~~~~g~~~~a~~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~ 443 (634)
+.-+...++-+.|..+|+..++ .+..+ ...|..+|+-=..-|++..+..+-++| ..-|...+-..+.+-|..
T Consensus 473 l~fLi~inde~naraLFetsv~---r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~i 547 (660)
T COG5107 473 LLFLIRINDEENARALFETSVE---RLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAI 547 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHH---HHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhh
Confidence 6666778999999999997775 34444 678999999888999998888776666 223444344444444443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=83.41 E-value=61 Score=33.73 Aligned_cols=139 Identities=11% Similarity=0.033 Sum_probs=73.8
Q ss_pred hcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 006705 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316 (634)
Q Consensus 237 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 316 (634)
+..+++.-+++-++..+ +.||..+.-.++ +--......++++++++.++.|-. . |.+....+..-.
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~-------~----lg~s~~~~~~g~ 245 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA-------S----LGKSQFLQHHGH 245 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH-------h----hchhhhhhcccc
Confidence 44445555555555544 345554433322 222344567788888877765410 0 001000011011
Q ss_pred HHhhcCCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhh
Q 006705 317 VFDNMSERT----VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389 (634)
Q Consensus 317 ~f~~m~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 389 (634)
..+....++ +..-..+..+.-+.|+.++|++.|++|.+.....-+......|+.++...+.+.++..++.+-.
T Consensus 246 ~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 246 FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 111122222 2222335555667888889999998888751111123466678888888888888888887754
|
The molecular function of this protein is uncertain. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.20 E-value=9.6 Score=36.64 Aligned_cols=98 Identities=12% Similarity=0.155 Sum_probs=70.8
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-C--------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006705 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE-R--------TVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359 (634)
Q Consensus 289 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~ 359 (634)
.|.+....+...++..-....+++++...+-++.. | ..++|-.++. .-++++++.++..=... |+-
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqY-GiF 132 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQY-GIF 132 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchh-ccc
Confidence 35555666666777777767788888888777663 2 2233333322 33577888888887787 899
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhc
Q 006705 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391 (634)
Q Consensus 360 pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 391 (634)
||..|++.+++.+.+.+++.+|.++.-.|...
T Consensus 133 ~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 133 PDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred cchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999999999888877776653
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=82.49 E-value=6.8 Score=33.92 Aligned_cols=55 Identities=22% Similarity=0.201 Sum_probs=38.7
Q ss_pred HHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCC
Q 006705 441 CRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495 (634)
Q Consensus 441 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 495 (634)
-...++.+.++.++.-+.-+.|..+..-..-+..+...|+|.+|.++++.+.+..
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 3455666777777777777777777766677777777777777777777775543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=81.97 E-value=15 Score=32.80 Aligned_cols=61 Identities=13% Similarity=0.001 Sum_probs=33.1
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC--hhhHHHHHHHHhccCCcHHHHHHHHHHH
Q 006705 126 SWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN--EFTFATVLTSCAGAFGFELGKQIHSLII 186 (634)
Q Consensus 126 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 186 (634)
.+..+..-|.+.|+.++|++.|.+++.....|. ...+..++..+...+++..+.....++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 455555666666666666666666655433332 2234455555555566665555554443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=81.91 E-value=13 Score=33.66 Aligned_cols=75 Identities=7% Similarity=0.034 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCc-cCChHHHHHHHHHHHHcCCHHHHH
Q 006705 343 REVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF-EPEIEHYGCVVDMLGRAGRVGEAL 419 (634)
Q Consensus 343 ~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~ 419 (634)
++|.+.|-++... +.--+......| ..|....+.+++..++....+.+..- .+|++.+.+|+..|-+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~-~~l~t~elq~aL-AtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGT-PELETAELQYAL-ATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCC-CCCCCHHHHHHH-HHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4677777777766 443333333333 34444567778887777777654333 567778888888888888777764
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=81.49 E-value=7.5 Score=33.10 Aligned_cols=54 Identities=11% Similarity=0.054 Sum_probs=43.1
Q ss_pred hcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCCC
Q 006705 443 VHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496 (634)
Q Consensus 443 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 496 (634)
..++.+.++.++..+.-+.|+.+..-..-+..+...|+|++|.++++...+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 367777778888888888888877777888888888899999998888876653
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=80.91 E-value=42 Score=33.17 Aligned_cols=194 Identities=13% Similarity=0.043 Sum_probs=103.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH-------ccCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHhh-cCCccC---hhh
Q 006705 196 VGSSLLDMYAKAGRIHEARGVF-------ECLPER--DVVSCTAIISGYAQLGLDEEAIELFRKLQV-EGMISN---YVT 262 (634)
Q Consensus 196 ~~~~li~~y~~~g~~~~A~~~~-------~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~---~~t 262 (634)
++..+..+.++.|.++++...- .+..+. -..+|-.+..++-+.-++.+++.+-+.-.. .|..|. -..
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 3444555556666655554321 111111 112444455555554555555554333221 122221 123
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHcC-----CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC-------CCChh---
Q 006705 263 YASVLTALSGLAALGHGKQVHSHVLRFE-----IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-------ERTVI--- 327 (634)
Q Consensus 263 ~~~ll~~~~~~~~~~~a~~i~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~-------~~~~~--- 327 (634)
..++-.++...+.++++.+.|+...+.. ......++-+|...|.+..++++|.-+..+.- -.|..
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 3345566677777888887777666532 22345677888888888888887765544332 12322
Q ss_pred ---hHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhh
Q 006705 328 ---SWNAMLVGYSKHGMGREVVELFNLMREE---NKVKPDS-VTYLAVLSGCSHGGMEDRGLAVFHEIV 389 (634)
Q Consensus 328 ---~~~~li~~~~~~g~~~~A~~~~~~m~~~---~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~ 389 (634)
+.-.|.-++-..|....|.+.-++..+. .|-+|-. .....+.+.|...|+.+.|..-|+...
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 1223455677778777777777665442 0322221 334455566778888888877666654
|
|
| >PHA02875 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=80.89 E-value=70 Score=33.08 Aligned_cols=205 Identities=13% Similarity=0.054 Sum_probs=101.3
Q ss_pred hcCcHHHHHHHHHHcCCCCCHhh--HHHHHHHHhccCCchHHHHHHHHHHHhCCCCChh--HHHHHHHHHHcCCChHHHH
Q 006705 38 SNGQLTKALIEMATLGLEMRFEE--YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVY--LRTRLIVFYNKCECLSDAR 113 (634)
Q Consensus 38 ~~~~~~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~ 113 (634)
+.|+. ++++.+.+.|..|+... -.+.+..++..|+.+ +.+.+.+.|..|+.. ...+.+...++.|+.+.+.
T Consensus 11 ~~g~~-~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~ 85 (413)
T PHA02875 11 LFGEL-DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVE 85 (413)
T ss_pred HhCCH-HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHH
Confidence 44433 55677777887776543 234455555666654 445556666554432 1223455566778888887
Q ss_pred HHHhhcCCC----CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhh--HHHHHHHHhccCCcHHHHHHHHHHHH
Q 006705 114 KMFDEMRER----NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFT--FATVLTSCAGAFGFELGKQIHSLIIK 187 (634)
Q Consensus 114 ~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~ 187 (634)
.+++.-... +..-++. +...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+... .+++
T Consensus 86 ~Ll~~~~~~~~~~~~~g~tp-L~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~----~Ll~ 156 (413)
T PHA02875 86 ELLDLGKFADDVFYKDGMTP-LHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIE----LLID 156 (413)
T ss_pred HHHHcCCcccccccCCCCCH-HHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH----HHHh
Confidence 777654321 1112233 3334455554 44555556666654322 123344445566655433 3344
Q ss_pred hCCCCchH--HHHHHHHHHHhcCCHHHHHHHHccCCCCChh---hHHHHHHHHHhcCChHHHHHHHHHHhhcCCccCh
Q 006705 188 SNFESHIY--VGSSLLDMYAKAGRIHEARGVFECLPERDVV---SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNY 260 (634)
Q Consensus 188 ~g~~~~~~--~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 260 (634)
.|..++.. ...+.+...+..|+.+-+..+++.-..++.. ...+.+...+..|+.+ +.+.+.+.|..++.
T Consensus 157 ~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 157 HKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 45433221 1122333445567777666666654443322 1123333334455543 34444556665553
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=80.49 E-value=2.2 Score=25.65 Aligned_cols=28 Identities=11% Similarity=-0.038 Sum_probs=12.7
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhccCC
Q 006705 435 GSLLGACRVHYNVDIGEFVGQRLMEIEP 462 (634)
Q Consensus 435 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p 462 (634)
..+...+...|+++.|...+++..+++|
T Consensus 5 ~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 5 YNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3334444444444444444444444444
|
... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=80.34 E-value=11 Score=29.36 Aligned_cols=60 Identities=17% Similarity=0.180 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHH
Q 006705 344 EVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407 (634)
Q Consensus 344 ~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~ 407 (634)
++.+-++.+... ...|++....+.|.||.+.+++..|.++|+.++.+ ...+...|..+++
T Consensus 25 e~rr~mN~l~~~-DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K---~~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGY-DLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK---CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---ccCchhhHHHHHH
Confidence 455555555555 78899999999999999999999999999988753 2334556776654
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.33 E-value=16 Score=35.24 Aligned_cols=100 Identities=16% Similarity=0.196 Sum_probs=63.9
Q ss_pred CCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC-------CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh
Q 006705 88 CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE-------RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEF 160 (634)
Q Consensus 88 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 160 (634)
|......+...++..-....+++++...+-+... |+... .+.++.+. .-++++++.++..=.+-|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 3344444555566555556677777776655543 22211 12222222 235678888877777788888888
Q ss_pred hHHHHHHHHhccCCcHHHHHHHHHHHHhC
Q 006705 161 TFATVLTSCAGAFGFELGKQIHSLIIKSN 189 (634)
Q Consensus 161 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 189 (634)
+++.+|..+.+.+++..|.++.-.|+...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888888888777766554
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=80.14 E-value=1.1 Score=38.40 Aligned_cols=84 Identities=15% Similarity=0.174 Sum_probs=51.4
Q ss_pred HHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHH
Q 006705 266 VLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREV 345 (634)
Q Consensus 266 ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 345 (634)
++..+.+.+......++++.+.+.+...+..+.+.|+..|++.++.+...++++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4555666666677777777777666566677778888888887776777776663322 3333455555556666666
Q ss_pred HHHHHHH
Q 006705 346 VELFNLM 352 (634)
Q Consensus 346 ~~~~~~m 352 (634)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 5555544
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.04 E-value=55 Score=30.95 Aligned_cols=232 Identities=16% Similarity=0.211 Sum_probs=130.5
Q ss_pred CCHHHHHHHHccCCC----C---ChhhHHHHHHHHHhcCChHHHHHHHHHHhhc---CC--ccChhhHHHHHHHHhcccc
Q 006705 208 GRIHEARGVFECLPE----R---DVVSCTAIISGYAQLGLDEEAIELFRKLQVE---GM--ISNYVTYASVLTALSGLAA 275 (634)
Q Consensus 208 g~~~~A~~~~~~m~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~--~p~~~t~~~ll~~~~~~~~ 275 (634)
.++++|..-|+++.+ + .--+.-.||..+.+.+++++.++.|.+|..- .+ .-...+.++++.-.+...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 456666666665432 1 1223445777788888888888888777531 11 2234566777776666666
Q ss_pred hHHHHHHHHHHHHc-----CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--------C-------ChhhHHHHHHH
Q 006705 276 LGHGKQVHSHVLRF-----EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE--------R-------TVISWNAMLVG 335 (634)
Q Consensus 276 ~~~a~~i~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--------~-------~~~~~~~li~~ 335 (634)
.+.-..+++.-++. +-..=..+-+-|...|...|.+..-.+++.++.. . -...|..-|+.
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 66555555533321 0011112234566667777777777777766542 0 13467777888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-----ccCcHHHHHHHHHHhhhccC--CccC--ChHHHHHHH
Q 006705 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS-----HGGMEDRGLAVFHEIVDCKD--GFEP--EIEHYGCVV 406 (634)
Q Consensus 336 ~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~-----~~g~~~~a~~~~~~~~~~~~--~~~p--~~~~~~~li 406 (634)
|....+-.+-..+|++...-...-|.+.. ..+++-|. +.|.+++|-.=|=+..+.|. |-+. +.--|-.|.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 88888877777788776554233455543 34556554 45777776543333333331 2111 233466677
Q ss_pred HHHHHcCC----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006705 407 DMLGRAGR----VGEALEFIKNMPFEPTAAILGSLLGACRVH 444 (634)
Q Consensus 407 ~~~~~~g~----~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~ 444 (634)
+++.++|- -.+|. -....|.....+.|+.+|..+
T Consensus 280 NMLmkS~iNPFDsQEAK----PyKNdPEIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 280 NMLMKSGINPFDSQEAK----PYKNDPEILAMTNLVAAYQNN 317 (440)
T ss_pred HHHHHcCCCCCcccccC----CCCCCHHHHHHHHHHHHHhcc
Confidence 78877762 12221 012246667778888888654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.1 bits (168), Expect = 3e-12
Identities = 93/647 (14%), Positives = 181/647 (27%), Gaps = 204/647 (31%)
Query: 59 EEYDTLLNA-CVNQRTLR-------GGQRVHAHMIKTCYRPPVY--LRTRLIVFYNKCEC 108
EE D ++ + TLR + + ++ R Y L + + K E
Sbjct: 49 EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN-YKFLMSPI-----KTEQ 102
Query: 109 L--SDARKMFDEMRER--NVVSWTAMISAYS-QKAHSFEALNLFIRMLRSDTEPNEFTFA 163
S +M+ E R+R N + + Y+ + + L + LR N
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQ---VFAKYNVSRLQPYLKLRQALLELRP--AKNVLID- 156
Query: 164 TVLTSCAGAFGFELGKQI------HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF 217
G G GK S ++ + I+ + + V
Sbjct: 157 -------GVLGS--GKTWVALDVCLSYKVQCKMDFKIF--------WLNLKNCNSPETVL 199
Query: 218 ECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALG 277
E L + I + + + + S+ L L
Sbjct: 200 EMLQKL----LYQIDPNWTSRS--------------DHSSNIKLRIHSIQAELRRL---- 237
Query: 278 HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYS 337
+ Y +N L+ V N V NA
Sbjct: 238 -----------LKSKPY---ENCLL--------------VLLN-----V--QNA------ 256
Query: 338 KHGMGREVVELFN-----LM--REE---NKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHE 387
+ FN L+ R + + + + T++ L S D ++ +
Sbjct: 257 ------KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI-SLDHHSMTLTPDEVKSLLLK 309
Query: 388 IVDCKDGFEPEIEHYG--CVVDMLGRAGRVGEA-LEFIKNMPFEPTAAILGSLLGA---- 440
+DC+ P + ++ + R G A + K++ + I+ S L
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 441 -CRVHYNVDIGEFVGQRLMEIEPENAGN--YVILSNLYASAGRWEDVTR------VRELM 491
R + + F P +A + ++LS + W DV + V +L
Sbjct: 370 EYRKMF-DRLSVF---------PPSA-HIPTILLSLI------WFDVIKSDVMVVVNKLH 412
Query: 492 KEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVL 551
K V K P S I + + + + E A + + + +
Sbjct: 413 KYSLVEKQPKESTIS----IPSIYLELKVK--LENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 552 YDVDE-------------EQKEKVLLGHSEKLALTFGLI-------GTPEGAPIRVIKNL 591
+D+ E E++ L + L F + T A ++ L
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTL--FRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524
Query: 592 RICVDCHNFAKFVSK---VYGRKVSLRDKNRF-----HHIVEGTCSC 630
+ + ++ Y R V F +++ +
Sbjct: 525 Q---QLKFYKPYICDNDPKYERLV--NAILDFLPKIEENLICSKYTD 566
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 1e-04
Identities = 49/328 (14%), Positives = 101/328 (30%), Gaps = 89/328 (27%)
Query: 38 SNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRT-------LRGGQRVHAHMIKTCYR 90
S T ++ ++ L +E +LL ++ R L R + +I R
Sbjct: 282 SAATTTHISLDHHSMTLTP--DEVKSLLLKYLDCRPQDLPREVLTTNPRRLS-IIAESIR 338
Query: 91 PPV----YLRTRLIVFYNKCECLSDARKMF------DEMRERNVVSWTAMISAYSQKAHS 140
+ + + C+ L+ + E R+
Sbjct: 339 DGLATWDNWK------HVNCDKLTTIIESSLNVLEPAEYRKM------------------ 374
Query: 141 FEALNLF----------IRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF 190
F+ L++F + ++ D ++ V+ SL+ K
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDV--MVVVNKLHKY----------SLVEKQPK 422
Query: 191 ESHIYVGSSLLDMYAKA---GRIH----EARGVFECLPERDVVSCTAIISGY-------- 235
ES I + S L++ K +H + + + D++ + Y
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI--PPYLDQYFYSHIGHH 480
Query: 236 -AQLGLDEEAIELFRKLQVE-GMISNYVTYASVLTALSG--LAALGHGKQVHSHVLRFEI 291
+ E + LFR + ++ + + + S SG L L K ++ +
Sbjct: 481 LKNIEHPER-MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND- 538
Query: 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFD 319
P Y L N+++D K + D
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYTD 566
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.4 bits (142), Expect = 3e-09
Identities = 27/214 (12%), Positives = 69/214 (32%), Gaps = 9/214 (4%)
Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSER-------TVISWNAMLVGYSKHGMGREVVELFNL 351
+ L + + + T+ +NA+++G+++ G +E+V + +
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM 190
Query: 352 MREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411
+++ + PD ++Y A L + + E + ++G + + ++ R
Sbjct: 191 VKDAG-LTPDLLSYAAALQCMGRQDQDAGTIERCLEQM-SQEGLKLQALFTAVLLSEEDR 248
Query: 412 AGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVIL 471
A + + P + R Y D + + ++ L
Sbjct: 249 ATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQL 308
Query: 472 SNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWI 505
AS V + KE + ++
Sbjct: 309 HMELASRVCVVSVEKPTLPSKEVKHARKTLKTLR 342
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 56.0 bits (133), Expect = 3e-08
Identities = 18/152 (11%), Positives = 50/152 (32%), Gaps = 7/152 (4%)
Query: 126 SWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLI 185
+ T + + A L ++ P E A +L G ++ +
Sbjct: 59 ALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQH 118
Query: 186 IKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER-------DVVSCTAIISGYAQL 238
++ + ++ A + + + A++ G+A+
Sbjct: 119 SQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQ 178
Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTAL 270
G +E + + ++ G+ + ++YA+ L +
Sbjct: 179 GAFKELVYVLFMVKDAGLTPDLLSYAAALQCM 210
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 634 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.89 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.88 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.84 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.82 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.81 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.81 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.79 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.77 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.76 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.76 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.76 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.75 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.74 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.73 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.72 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.71 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.71 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.71 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.71 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.71 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.69 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.68 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.68 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.68 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.67 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.64 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.63 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.55 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.54 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.54 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.5 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.5 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.49 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.46 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.45 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.44 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.44 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.43 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.43 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.43 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.43 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.42 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.42 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.41 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.41 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.41 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.41 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.37 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.34 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.34 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.34 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.32 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.31 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.31 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.31 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.31 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.3 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.29 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.27 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.23 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.21 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.19 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.19 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.18 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.17 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.15 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.14 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.12 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.11 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.1 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.09 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.08 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.04 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.02 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.97 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.94 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.92 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.92 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.89 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.87 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.85 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.82 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.82 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.81 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.78 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.78 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.77 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.77 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.77 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.76 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.68 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.66 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.65 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.63 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.61 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.6 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.6 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.59 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.58 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.56 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.56 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.56 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.54 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.54 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.54 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.53 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.51 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.5 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.5 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.47 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.46 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.44 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.43 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.41 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.41 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.41 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.4 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.39 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.38 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.35 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.34 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.32 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.3 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.29 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.27 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.25 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.24 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.23 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.21 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.2 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.19 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.17 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.16 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.16 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.15 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.15 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.15 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.14 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.14 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.14 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.13 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.13 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.12 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.12 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.11 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.09 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.09 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.06 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.04 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.01 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.99 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.98 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.98 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.95 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.94 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.91 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.91 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.9 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.9 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.9 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.89 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.89 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.87 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.87 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.86 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.86 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.83 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.8 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.79 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.76 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.74 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.73 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.71 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.7 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.69 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.69 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.64 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.63 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.57 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.56 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.55 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.55 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.53 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.52 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.46 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.44 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.43 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.34 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.29 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.28 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.15 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.1 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.09 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.92 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 96.9 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.83 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.82 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.73 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.69 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.68 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.66 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.51 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.48 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.44 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.42 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.32 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.23 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.2 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.11 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.07 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.99 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.73 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.38 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.03 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.78 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.76 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.38 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.14 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 94.06 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.03 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.35 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 90.85 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 90.82 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 90.2 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 90.2 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 89.9 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 89.45 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 89.09 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 87.6 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 87.36 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 87.08 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 86.11 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 85.88 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 84.88 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 84.54 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 84.29 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 84.26 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 82.48 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 81.65 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 81.55 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 81.28 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 81.12 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 80.26 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-39 Score=351.02 Aligned_cols=430 Identities=10% Similarity=-0.024 Sum_probs=373.2
Q ss_pred CCCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcC--CCCcchHHHHHH
Q 006705 55 EMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR--ERNVVSWTAMIS 132 (634)
Q Consensus 55 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~ 132 (634)
.++...|+.++..|.+.|++++|..+++.+.+. .|+..++..++..|.+.|++++|..+|+.+. .++..+|+.++.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 158 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAF 158 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHH
Confidence 357778888888888888888888888888854 4677788888888888888888888888873 478888888888
Q ss_pred HHHhCCChhHHHHHHHHHHHC---------------CCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHH-
Q 006705 133 AYSQKAHSFEALNLFIRMLRS---------------DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV- 196 (634)
Q Consensus 133 ~~~~~g~~~~A~~~~~~m~~~---------------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~- 196 (634)
+|.+.|++++|+++|+++... |.+++..+|+.++.++.+.|++++|.++|+.+.+.+ +.+...
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~ 237 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAF 237 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHH
Confidence 888888888888888853221 223356788888888888888888888888888765 223333
Q ss_pred -------------------------------------HHHHHHHHHhcCCHHHHHHHHccCCC--CChhhHHHHHHHHHh
Q 006705 197 -------------------------------------GSSLLDMYAKAGRIHEARGVFECLPE--RDVVSCTAIISGYAQ 237 (634)
Q Consensus 197 -------------------------------------~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~ 237 (634)
++.++.+|.+.|++++|.++|+++.+ ++..+|+.++.+|.+
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 33346677789999999999999987 799999999999999
Q ss_pred cCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 006705 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317 (634)
Q Consensus 238 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 317 (634)
.|++++|+++|++|.+.+ +.+..++..++.++.+.|++++|.+++..+.+.. +.+..+++.++.+|.++|++++|.++
T Consensus 318 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999999999875 4477889999999999999999999999999765 66789999999999999999999999
Q ss_pred HhhcC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCC
Q 006705 318 FDNMS---ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG 394 (634)
Q Consensus 318 f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 394 (634)
|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+. .+++..++..++.+|.+.|++++|.++|+.+.+.
T Consensus 396 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 470 (597)
T 2xpi_A 396 FSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--- 470 (597)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 99875 347889999999999999999999999999986 4557899999999999999999999999999974
Q ss_pred ccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCC
Q 006705 395 FEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-------PFEPT--AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENA 465 (634)
Q Consensus 395 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 465 (634)
.+.+..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|...|++++|...++++.+.+|+++
T Consensus 471 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 550 (597)
T 2xpi_A 471 FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDA 550 (597)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCH
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh
Confidence 2457899999999999999999999999987 44677 78999999999999999999999999999999999
Q ss_pred chHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 466 GNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 466 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
.+|..++.+|.+.|++++|.+.++++.+.
T Consensus 551 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 551 NVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999764
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=339.73 Aligned_cols=440 Identities=8% Similarity=-0.049 Sum_probs=383.5
Q ss_pred CCCChhhHHHhhhcCcHH---HHHHHHHHcCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 006705 26 FPPNPQNLKTLCSNGQLT---KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVF 102 (634)
Q Consensus 26 ~~~~~~~i~~~~~~~~~~---~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 102 (634)
...++.++..+.+.|+.. .+|++|.. ..|+..++..+..+|.+.|++++|..+|+.+... +++..+++.++.+
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 84 EDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFC 159 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHH
Confidence 334567888999999876 56777774 5678899999999999999999999999988654 6789999999999
Q ss_pred HHcCCChHHHHHHHhhcCCC-------------------CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh-hhH
Q 006705 103 YNKCECLSDARKMFDEMRER-------------------NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNE-FTF 162 (634)
Q Consensus 103 y~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~ 162 (634)
|.++|++++|.++|+++... ++.+|+.++.+|.+.|++++|+++|++|...+ |+. ..+
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~ 237 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAF 237 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHH
Confidence 99999999999999964433 47899999999999999999999999998753 432 222
Q ss_pred HH--------------------------------------HHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 006705 163 AT--------------------------------------VLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMY 204 (634)
Q Consensus 163 ~~--------------------------------------ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 204 (634)
.. ++..|.+.|++++|.++++.+.+. +++..+++.++.+|
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHH
Confidence 22 244566788999999999998765 68899999999999
Q ss_pred HhcCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHH
Q 006705 205 AKAGRIHEARGVFECLPE---RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQ 281 (634)
Q Consensus 205 ~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 281 (634)
.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|..+|++|.... +.+..++..+...|.+.|++++|.+
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHH
Confidence 999999999999998853 477899999999999999999999999998653 5578899999999999999999999
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 006705 282 VHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS---ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358 (634)
Q Consensus 282 i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~ 358 (634)
++..+.+.. +.+..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+. .
T Consensus 395 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~ 471 (597)
T 2xpi_A 395 YFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--F 471 (597)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 999999865 5578899999999999999999999999875 347899999999999999999999999999986 3
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccC--CccCC--hHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHH
Q 006705 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD--GFEPE--IEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAA 432 (634)
Q Consensus 359 ~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~ 432 (634)
+.+..+|..+...|.+.|++++|.++|+.+.+..+ +..|+ ..+|..++.+|.+.|++++|.+.|+++ .. +.+..
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 551 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN 551 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Confidence 55789999999999999999999999999986411 33666 789999999999999999999999987 22 34789
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhh
Q 006705 433 ILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS 477 (634)
Q Consensus 433 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 477 (634)
+|..+..+|...|++++|...++++++++|+++..+..|.++|..
T Consensus 552 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 552 VHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999988854
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=257.83 Aligned_cols=209 Identities=11% Similarity=0.077 Sum_probs=174.5
Q ss_pred HHHHHHHHcCCCCCH-hhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCCC
Q 006705 44 KALIEMATLGLEMRF-EEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122 (634)
Q Consensus 44 ~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~ 122 (634)
.+++++.+.+..+.. ..++.+|.+|++.|++++|.++|+.|.+.|+.||..+||+||.+|++.+...++
T Consensus 11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~---------- 80 (501)
T 4g26_A 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES---------- 80 (501)
T ss_dssp -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS----------
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh----------
Confidence 456677777765543 457888999999999999999999999999999999999999998887754332
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 006705 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLD 202 (634)
Q Consensus 123 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 202 (634)
.+.+..++|.++|++|...|+.||..||+++|.+|++.|++++|.++++.|.+.|+.||..+||+||.
T Consensus 81 ------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~ 148 (501)
T 4g26_A 81 ------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALF 148 (501)
T ss_dssp ------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred ------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHH
Confidence 23445688999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHccCC----CCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhccc
Q 006705 203 MYAKAGRIHEARGVFECLP----ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA 274 (634)
Q Consensus 203 ~y~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 274 (634)
+|++.|++++|.++|++|. .||..+|++||.+|++.|+.++|.++|++|++.|..|+..||+.++..++..+
T Consensus 149 ~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 149 GFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 9999999999999999985 47999999999999999999999999999999999999999999999887643
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.5e-28 Score=253.72 Aligned_cols=184 Identities=14% Similarity=0.141 Sum_probs=167.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccc---------hHHHHHHHHHHHHcCCCCchh
Q 006705 226 VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA---------LGHGKQVHSHVLRFEIPSYVV 296 (634)
Q Consensus 226 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~i~~~~~~~~~~~~~~ 296 (634)
..++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45788899999999999999999999999999999999999999986553 678999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcC----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 006705 297 LQNSLIDMYSKCGSLTYSRRVFDNMS----ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC 372 (634)
Q Consensus 297 ~~~~li~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~ 372 (634)
+||+||++|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+. |+.||..||++||.+|
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES-EVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHH
Confidence 99999999999999999999999986 479999999999999999999999999999999 9999999999999999
Q ss_pred hccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHc
Q 006705 373 SHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA 412 (634)
Q Consensus 373 ~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 412 (634)
++.|++++|.+++++|.+. ++.|+..||+.++..|...
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~--g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDL--VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHH--TSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHh--CCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999987 9999999999999988753
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-25 Score=229.99 Aligned_cols=371 Identities=12% Similarity=0.109 Sum_probs=254.0
Q ss_pred HHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCCChh
Q 006705 65 LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE---RNVVSWTAMISAYSQKAHSF 141 (634)
Q Consensus 65 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 141 (634)
...+.+.|++++|.+.+..+.+.. +.+...+..+...+.+.|++++|...++...+ .+..+|+.+...|.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 344556777777777777777664 33445555666667777777777777765543 35566777777777777777
Q ss_pred HHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccC
Q 006705 142 EALNLFIRMLRSDTEPN-EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECL 220 (634)
Q Consensus 142 ~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 220 (634)
+|+..|+++... .|+ ..+|..+..++...|++++|.+.+..+++.. +.+..++..+...|...|++++|.+.|+++
T Consensus 85 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 85 EAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 777777777653 343 3456667777777777777777777776654 334455556666666666666666666655
Q ss_pred CC---CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhH
Q 006705 221 PE---RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297 (634)
Q Consensus 221 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~ 297 (634)
.. .+..+|+.+...|.+.|++++|+..|+++.+.. | .+...
T Consensus 162 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p----------------------------------~~~~~ 205 (388)
T 1w3b_A 162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--P----------------------------------NFLDA 205 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--T----------------------------------TCHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C----------------------------------CcHHH
Confidence 32 234566666666666666666666666665532 2 22334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Q 006705 298 QNSLIDMYSKCGSLTYSRRVFDNMS---ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH 374 (634)
Q Consensus 298 ~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~ 374 (634)
+..+...+...|++++|...|++.. ..+..+|..+...|.+.|++++|++.|+++.+. .+.+..++..+..++..
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~ 283 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKE 283 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHH
Confidence 4455555666666666666665543 224567777777788888888888888887765 23345677777888888
Q ss_pred cCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHH
Q 006705 375 GGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEF 452 (634)
Q Consensus 375 ~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~ 452 (634)
.|++++|...|+.+.+. .+.+..++..+...|.+.|++++|.+.++++ .. +.+..+|..+...+...|++++|..
T Consensus 284 ~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 360 (388)
T 1w3b_A 284 KGSVAEAEDCYNTALRL---CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HSCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhh---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888888763 2456778888888888888888888888876 33 3356778888888888888888888
Q ss_pred HHHHHhccCCCCCchHHHHHHHHhhcCC
Q 006705 453 VGQRLMEIEPENAGNYVILSNLYASAGR 480 (634)
Q Consensus 453 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 480 (634)
.++++.++.|+++..|..++.+|.+.|+
T Consensus 361 ~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 361 HYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 8888888888888888888888777653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-24 Score=224.31 Aligned_cols=353 Identities=14% Similarity=0.106 Sum_probs=303.1
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 006705 131 ISAYSQKAHSFEALNLFIRMLRSDTEPN-EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209 (634)
Q Consensus 131 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 209 (634)
...+.+.|++++|++.+..+... .|+ ...+..+...+...|++++|...+..+++.. +.+..++..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 45667789999999999888764 444 4455556667788899999999998888764 6678889999999999999
Q ss_pred HHHHHHHHccCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccCh-hhHHHHHHHHhcccchHHHHHHHHH
Q 006705 210 IHEARGVFECLPE--R-DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNY-VTYASVLTALSGLAALGHGKQVHSH 285 (634)
Q Consensus 210 ~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~i~~~ 285 (634)
+++|.+.|+++.. | +..+|..+..++.+.|++++|++.|+++.+. .|+. ..+..+...+...|++++|.+.+..
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999987743 3 5568999999999999999999999999875 4554 4566677778889999999999999
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH
Q 006705 286 VLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362 (634)
Q Consensus 286 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~ 362 (634)
+++.. +.+..+++.+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++.... .+.+.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCH
Confidence 98875 55678899999999999999999999998863 35678999999999999999999999999875 23356
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 006705 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM--PFEPTAAILGSLLGA 440 (634)
Q Consensus 363 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~ 440 (634)
.++..+..++...|++++|...|+.+.+. -+.+..+|..++..|.+.|++++|.+.|+++ ..+++..+|..+...
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 88899999999999999999999999964 2345788999999999999999999999987 234678899999999
Q ss_pred HHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 441 CRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 441 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
+...|++++|...++++.+..|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999763
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-22 Score=213.72 Aligned_cols=426 Identities=10% Similarity=-0.067 Sum_probs=318.7
Q ss_pred hhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC---CCcchHHHHHHHHH
Q 006705 59 EEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE---RNVVSWTAMISAYS 135 (634)
Q Consensus 59 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 135 (634)
..+...-..+.+.|+++.|...|+.+++.. |+...+..+..+|.+.|++++|...|+++.+ .+..+|..+..+|.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 456666777888999999999999999885 6888999999999999999999999997754 35678999999999
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHH---HHHHHhcCCHHH
Q 006705 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSL---LDMYAKAGRIHE 212 (634)
Q Consensus 136 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l---i~~y~~~g~~~~ 212 (634)
+.|++++|+..|+++...+. ++......++..+........+.+.+..+.+.+..|+....+.- ............
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 99999999999999988653 34444444444443333223333333222221111111100000 011111111222
Q ss_pred HHHHHccCC---------CC-ChhhHHHHHHHHHh---cCChHHHHHHHHHHhh-----cCC--------ccChhhHHHH
Q 006705 213 ARGVFECLP---------ER-DVVSCTAIISGYAQ---LGLDEEAIELFRKLQV-----EGM--------ISNYVTYASV 266 (634)
Q Consensus 213 A~~~~~~m~---------~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~--------~p~~~t~~~l 266 (634)
+...+.... .+ +...|......+.. .|++++|+.+|+++.. ..- +.+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 222222221 11 24455555555554 8999999999999987 311 2234567778
Q ss_pred HHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChH
Q 006705 267 LTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGR 343 (634)
Q Consensus 267 l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~ 343 (634)
...+...|++++|...+..+.+.... ..++..+...|...|++++|...|+++.+ .+...|..+...|...|+++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 88899999999999999999988644 88889999999999999999999998764 36778999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 006705 344 EVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK 423 (634)
Q Consensus 344 ~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 423 (634)
+|+..|++..+. .+.+..++..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|...++
T Consensus 322 ~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 322 QAGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRK---FPEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp HHHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---cccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999886 3345678888999999999999999999999864 24467889999999999999999999998
Q ss_pred hC----CCCCC----HHHHHHHHHHHHh---cCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 424 NM----PFEPT----AAILGSLLGACRV---HYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 424 ~m----~~~p~----~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
++ +..++ ...|..+...+.. .|+++.|...++++.+..|+++..+..++.+|.+.|++++|.+.+++..
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 86 22233 4488899999999 9999999999999999999999999999999999999999999999997
Q ss_pred hC
Q 006705 493 EK 494 (634)
Q Consensus 493 ~~ 494 (634)
+.
T Consensus 477 ~~ 478 (514)
T 2gw1_A 477 DL 478 (514)
T ss_dssp HH
T ss_pred Hh
Confidence 64
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-21 Score=205.48 Aligned_cols=335 Identities=11% Similarity=0.045 Sum_probs=236.4
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 006705 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLD 202 (634)
Q Consensus 123 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 202 (634)
+...|..+...|.+.|++++|+.+|+++.... +.+..++..+..++...|++++|...+..+++.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 44556666677777777777777777766532 2345566666666667777777777777766654 445566666777
Q ss_pred HHHhcCCHHHHHHHHccCCCC---Ch---hhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccch
Q 006705 203 MYAKAGRIHEARGVFECLPER---DV---VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAAL 276 (634)
Q Consensus 203 ~y~~~g~~~~A~~~~~~m~~~---~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 276 (634)
+|.+.|++++|.+.|+++... +. ..|..++..+...+ +......+...|++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-----------------------LRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHcCCH
Confidence 777777777777777666442 22 44544444321111 11122234445555
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006705 277 GHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS---ERTVISWNAMLVGYSKHGMGREVVELFNLMR 353 (634)
Q Consensus 277 ~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 353 (634)
++|...+..+.+.. +.+..++..+..+|.+.|++++|...|+++. ..+..+|..+...|...|++++|++.|+++.
T Consensus 160 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 160 TAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666665555543 4456677778888888888888888888775 3467888899999999999999999999988
Q ss_pred HcCCCCCCH-HHHHHH------------HHHHhccCcHHHHHHHHHHhhhccCCccCC-----hHHHHHHHHHHHHcCCH
Q 006705 354 EENKVKPDS-VTYLAV------------LSGCSHGGMEDRGLAVFHEIVDCKDGFEPE-----IEHYGCVVDMLGRAGRV 415 (634)
Q Consensus 354 ~~~g~~pd~-~t~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~ 415 (634)
.. .|+. ..+..+ ..+|.+.|++++|..+|+.+.+. .|+ ..+|..++.+|.+.|++
T Consensus 239 ~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~~~~~l~~~~~~~g~~ 311 (450)
T 2y4t_A 239 KL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT----EPSIAEYTVRSKERICHCFSKDEKP 311 (450)
T ss_dssp HH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CCSSHHHHHHHHHHHHHHHHTTTCH
T ss_pred Hh---CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHHHHCCCH
Confidence 65 3443 333333 67889999999999999999864 344 45889999999999999
Q ss_pred HHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHH------------HHHhhcC--
Q 006705 416 GEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILS------------NLYASAG-- 479 (634)
Q Consensus 416 ~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-- 479 (634)
++|+..++++ .. +.+...|..+..+|...|++++|...+++++++.|+++..+..+. +.|...|
T Consensus 312 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~ 391 (450)
T 2y4t_A 312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVK 391 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSS
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCC
Confidence 9999999986 32 346889999999999999999999999999999999988888888 4465556
Q ss_pred ---CcHHHHHHHHH
Q 006705 480 ---RWEDVTRVREL 490 (634)
Q Consensus 480 ---~~~~A~~~~~~ 490 (634)
+.+++.+.+++
T Consensus 392 ~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 392 RNAKKQEIIKAYRK 405 (450)
T ss_dssp TTCCTTHHHHHHHH
T ss_pred ccCCHHHHHHHHHH
Confidence 44455555554
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.7e-21 Score=204.48 Aligned_cols=428 Identities=9% Similarity=-0.060 Sum_probs=303.2
Q ss_pred HhhhcCcHH---HHHHHHHHcCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHH
Q 006705 35 TLCSNGQLT---KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSD 111 (634)
Q Consensus 35 ~~~~~~~~~---~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 111 (634)
.+.+.|+.. ..|+++.... ||..+|..+..++...|+++.|...++.+++.+ +.+...+..+..+|.+.|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 91 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFAD 91 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHH
Confidence 455667655 5577777765 799999999999999999999999999999986 5567789999999999999999
Q ss_pred HHHHHhhcCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHh
Q 006705 112 ARKMFDEMRE---RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKS 188 (634)
Q Consensus 112 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 188 (634)
|...|+++.. ++......++..+........+.+.+..+...+..|+...+..-...............+...+...
T Consensus 92 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (514)
T 2gw1_A 92 AMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIF 171 (514)
T ss_dssp HHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTS
T ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhc
Confidence 9999998754 3444555555555544444444444433322222222222111111111111111111111111111
Q ss_pred CC---------CCchHHHHHHHHHHHh---cCCHHHHHHHHccCCC----------------C-ChhhHHHHHHHHHhcC
Q 006705 189 NF---------ESHIYVGSSLLDMYAK---AGRIHEARGVFECLPE----------------R-DVVSCTAIISGYAQLG 239 (634)
Q Consensus 189 g~---------~~~~~~~~~li~~y~~---~g~~~~A~~~~~~m~~----------------~-~~~~~~~li~~~~~~g 239 (634)
.. +.+...+..+...+.. .|++++|...|+++.. + +..+|..+...+...|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (514)
T 2gw1_A 172 KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKN 251 (514)
T ss_dssp CCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCC
Confidence 10 1224444444444444 7888888888876543 1 3457788888899999
Q ss_pred ChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 006705 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFD 319 (634)
Q Consensus 240 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 319 (634)
++++|+..|+++.... |+...+..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+
T Consensus 252 ~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 328 (514)
T 2gw1_A 252 DPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFD 328 (514)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999988764 447778888888899999999999999888765 4567788889999999999999999998
Q ss_pred hcC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCcc
Q 006705 320 NMS---ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFE 396 (634)
Q Consensus 320 ~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 396 (634)
++. ..+...|..+...|...|++++|+..|+++.+. .+.+..++..+...+...|++++|...++.+.+.. .-.
T Consensus 329 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~ 405 (514)
T 2gw1_A 329 KAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE-NKL 405 (514)
T ss_dssp HHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTS
T ss_pred HHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh-hcc
Confidence 865 346778888999999999999999999998876 33456788888889999999999999999987642 111
Q ss_pred CC----hHHHHHHHHHHHH---cCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCch
Q 006705 397 PE----IEHYGCVVDMLGR---AGRVGEALEFIKNM-P-FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGN 467 (634)
Q Consensus 397 p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 467 (634)
++ ...+..+...|.+ .|++++|...++++ . .+.+..+|..+...+...|++++|...++++.++.|+++..
T Consensus 406 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 485 (514)
T 2gw1_A 406 DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK 485 (514)
T ss_dssp SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHH
T ss_pred chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHH
Confidence 22 3488899999999 99999999999886 2 23467788889999999999999999999999999987666
Q ss_pred HHHH
Q 006705 468 YVIL 471 (634)
Q Consensus 468 ~~~l 471 (634)
+..+
T Consensus 486 ~~~~ 489 (514)
T 2gw1_A 486 LQAI 489 (514)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-20 Score=202.66 Aligned_cols=422 Identities=9% Similarity=-0.040 Sum_probs=323.9
Q ss_pred HhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC---CCcchHHHHHHHH
Q 006705 58 FEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE---RNVVSWTAMISAY 134 (634)
Q Consensus 58 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 134 (634)
...|..+...+.+.|+++.|...++.+++.. +.+...+..+...|.+.|++++|.+.|+++.+ .+..+|..+...|
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 4556777788899999999999999999986 55788899999999999999999999998754 4677899999999
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHhcCCHHH
Q 006705 135 SQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSN--FESHIYVGSSLLDMYAKAGRIHE 212 (634)
Q Consensus 135 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~ 212 (634)
...|++++|+..|+.+.. .|+... ..+..+...+....+...+..+++.. ..+........+..|....+.+.
T Consensus 104 ~~~g~~~~A~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSL---NGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHHHHhc---CCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 999999999999974422 232221 11223333444567777777775431 01111112344556777888888
Q ss_pred HHHHHccCCCCChh---hHHHHHHHHHhc--------CChHHHHHHHHHHhhcCCccCh--------hhHHHHHHHHhcc
Q 006705 213 ARGVFECLPERDVV---SCTAIISGYAQL--------GLDEEAIELFRKLQVEGMISNY--------VTYASVLTALSGL 273 (634)
Q Consensus 213 A~~~~~~m~~~~~~---~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~--------~t~~~ll~~~~~~ 273 (634)
+...+......+.. .+..+...+... |++++|+.+|+++.+. .|+. .++..+...+...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhc
Confidence 88888877765443 344444333322 4789999999999875 3442 2455666777888
Q ss_pred cchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChHHHHHHHH
Q 006705 274 AALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS---ERTVISWNAMLVGYSKHGMGREVVELFN 350 (634)
Q Consensus 274 ~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 350 (634)
|++++|...+..+.+.. |+...+..+...|.+.|++++|...|+++. ..+..+|..+...|...|++++|++.|+
T Consensus 257 ~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp TCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999999875 447888899999999999999999999876 3467889999999999999999999999
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC----C
Q 006705 351 LMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM----P 426 (634)
Q Consensus 351 ~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~ 426 (634)
+..+. .+.+..++..+...+...|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.++++ +
T Consensus 335 ~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 335 KAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLK---FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 99886 2334578888999999999999999999999874 2446778999999999999999999999886 1
Q ss_pred C----CCCHHHHHHHHHHHHhc----------CCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 427 F----EPTAAILGSLLGACRVH----------YNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 427 ~----~p~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
. ......+..+...+... |++++|...++++.+..|+++..+..++.+|.+.|++++|.+.+++..
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1 11223344455667777 999999999999999999999999999999999999999999999997
Q ss_pred hC
Q 006705 493 EK 494 (634)
Q Consensus 493 ~~ 494 (634)
+.
T Consensus 490 ~~ 491 (537)
T 3fp2_A 490 IL 491 (537)
T ss_dssp HH
T ss_pred Hh
Confidence 64
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-20 Score=194.72 Aligned_cols=344 Identities=11% Similarity=0.010 Sum_probs=185.8
Q ss_pred ChhHHHHHHHHHHcCCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 006705 92 PVYLRTRLIVFYNKCECLSDARKMFDEMRE---RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168 (634)
Q Consensus 92 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 168 (634)
+...+..+...|.+.|++++|..+|+++.+ .+..+|..+...|.+.|++++|+..|+++...+ +.+..++..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 344555555555556666666666555432 344555556666666666666666666655532 1234455555555
Q ss_pred HhccCCcHHHHHHHHHHHHhCCCCch---HHHHHH------------HHHHHhcCCHHHHHHHHccCCC---CChhhHHH
Q 006705 169 CAGAFGFELGKQIHSLIIKSNFESHI---YVGSSL------------LDMYAKAGRIHEARGVFECLPE---RDVVSCTA 230 (634)
Q Consensus 169 ~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~l------------i~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~ 230 (634)
+...|++++|...+..+.+.. +.+. .++..+ ...|.+.|++++|...|+++.. .+...|..
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 182 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELREL 182 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 666666666666666555432 2222 334434 3345666666666666665432 34556666
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 006705 231 IISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS 310 (634)
Q Consensus 231 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~ 310 (634)
+...|.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...+..+.+.. +.+...+..+... +
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~----~- 255 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV----K- 255 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH----H-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHH----H-
Confidence 6666666666666666666665432 2334555555555555566666665555555442 2222222222000 0
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC-----HHHHHHHHHHHhccCcHHHHHHHH
Q 006705 311 LTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD-----SVTYLAVLSGCSHGGMEDRGLAVF 385 (634)
Q Consensus 311 ~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd-----~~t~~~ll~a~~~~g~~~~a~~~~ 385 (634)
....+..+...+.+.|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|...+
T Consensus 256 --------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 318 (450)
T 2y4t_A 256 --------------KLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVC 318 (450)
T ss_dssp --------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 0001122256666667777777777766654 233 235556666666777777777777
Q ss_pred HHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HHhcC-----C
Q 006705 386 HEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPT-AAILGSLLGA------------CRVHY-----N 446 (634)
Q Consensus 386 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~------------~~~~~-----~ 446 (634)
+.+.+. .+.+...|..+..+|.+.|++++|...++++ ...|+ ...+..+..+ |...| +
T Consensus 319 ~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~ 395 (450)
T 2y4t_A 319 SEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAK 395 (450)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCC
T ss_pred HHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCC
Confidence 766642 1234666667777777777777777776665 33333 3344444322 22233 4
Q ss_pred chHHHHHHHH-HhccCCCC
Q 006705 447 VDIGEFVGQR-LMEIEPEN 464 (634)
Q Consensus 447 ~~~a~~~~~~-~~~~~p~~ 464 (634)
.+++...+++ ..+..|++
T Consensus 396 ~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 396 KQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp TTHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHHHHHHhCCCC
Confidence 5566777765 66777764
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-18 Score=186.99 Aligned_cols=420 Identities=10% Similarity=0.010 Sum_probs=309.7
Q ss_pred HhhhcCc---HHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHH
Q 006705 35 TLCSNGQ---LTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSD 111 (634)
Q Consensus 35 ~~~~~~~---~~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 111 (634)
.+.+.|+ +.+.|++...... .+...|..+...+...|+++.|...++.+++.+ +.+...+..+...|.+.|++++
T Consensus 34 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~ 111 (537)
T 3fp2_A 34 HFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTD 111 (537)
T ss_dssp HHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHH
Confidence 3445554 3467777776542 367889999999999999999999999999986 5567888999999999999999
Q ss_pred HHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHC------CCCCChhhHHHHHHHHhccCCcHHHHHHHHHH
Q 006705 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRS------DTEPNEFTFATVLTSCAGAFGFELGKQIHSLI 185 (634)
Q Consensus 112 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 185 (634)
|...|+.+. .+....+..+..+...+...+|+..++++... ...|+...... +....+.+.+...+...
T Consensus 112 A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 186 (537)
T 3fp2_A 112 AMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS----FFGIFDSHLEVSSVNTS 186 (537)
T ss_dssp HHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH----HHHTSCHHHHHHTSCCC
T ss_pred HHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH----HHHhcChHHHHHHHhhc
Confidence 999997543 33333444456666777778999999998653 22344433333 33333433333222111
Q ss_pred HHhCCCCc-hHHHHHHHHHHHhc--------CCHHHHHHHHccCCCC--C--------hhhHHHHHHHHHhcCChHHHHH
Q 006705 186 IKSNFESH-IYVGSSLLDMYAKA--------GRIHEARGVFECLPER--D--------VVSCTAIISGYAQLGLDEEAIE 246 (634)
Q Consensus 186 ~~~g~~~~-~~~~~~li~~y~~~--------g~~~~A~~~~~~m~~~--~--------~~~~~~li~~~~~~g~~~~A~~ 246 (634)
.. ..+. ......+...|... |++++|..+|+++.+. + ..+|..+...+...|++++|+.
T Consensus 187 ~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 264 (537)
T 3fp2_A 187 SN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQV 264 (537)
T ss_dssp CS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 10 1111 12334444443322 5789999999887652 2 2356777788899999999999
Q ss_pred HHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---
Q 006705 247 LFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE--- 323 (634)
Q Consensus 247 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--- 323 (634)
.|++.... .|+..++..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+
T Consensus 265 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 341 (537)
T 3fp2_A 265 LLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341 (537)
T ss_dssp HHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Confidence 99999986 4667788888999999999999999999999876 55788899999999999999999999998763
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccC---CccCChH
Q 006705 324 RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD---GFEPEIE 400 (634)
Q Consensus 324 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~---~~~p~~~ 400 (634)
.+...|..+...|...|++++|++.|+++.+. .+.+...+..+...+...|++++|...|+.+.+..+ .......
T Consensus 342 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 419 (537)
T 3fp2_A 342 ENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG 419 (537)
T ss_dssp TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHH
Confidence 46788999999999999999999999999886 344567888899999999999999999999876420 1111233
Q ss_pred HHHHHHHHHHHc----------CCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchH
Q 006705 401 HYGCVVDMLGRA----------GRVGEALEFIKNM-P-FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468 (634)
Q Consensus 401 ~~~~li~~~~~~----------g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 468 (634)
.+..+...|.+. |++++|...|++. . .+.+...|..+...+...|++++|...++++.++.|.+....
T Consensus 420 ~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 499 (537)
T 3fp2_A 420 PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL 499 (537)
T ss_dssp HHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHH
T ss_pred HHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 355566778888 9999999999987 2 234678899999999999999999999999999999865543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-19 Score=179.98 Aligned_cols=321 Identities=14% Similarity=0.122 Sum_probs=154.9
Q ss_pred cCCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHH
Q 006705 105 KCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184 (634)
Q Consensus 105 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 184 (634)
+.|++++|.+.++++..|+ +|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|..++..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 7788999999999997664 8999999999999999999999653 5778999999999999999999998888
Q ss_pred HHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHH
Q 006705 185 IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYA 264 (634)
Q Consensus 185 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 264 (634)
+.+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|..+|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 8774 45678899999999999999999988864 67789999999999999999999999977 4799
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHH
Q 006705 265 SVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGRE 344 (634)
Q Consensus 265 ~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 344 (634)
.+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHH
Confidence 9999999999999999999987 378899999999999999999988877765 444445568999999999999
Q ss_pred HHHHHHHHHHcCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhhhccCCccC------ChHHHHHHHHHHHHcCCHH
Q 006705 345 VVELFNLMREENKVKPDSV--TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP------EIEHYGCVVDMLGRAGRVG 416 (634)
Q Consensus 345 A~~~~~~m~~~~g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~ 416 (634)
|+.+++..... . +-... |...++-+-.+.+++.+.++.|..-. +++| +...|..++-.|...++++
T Consensus 226 ai~lLe~aL~l-e-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i----ni~k~~~~~~~~~~w~e~~~ly~~~~e~d 299 (449)
T 1b89_A 226 LITMLEAALGL-E-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV----NIPKVLRAAEQAHLWAELVFLYDKYEEYD 299 (449)
T ss_dssp HHHHHHHHTTS-T-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS----CHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCC-c-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence 99999988754 1 22334 44444444455666667766665433 5666 5778999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCC
Q 006705 417 EALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEP 462 (634)
Q Consensus 417 ~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 462 (634)
.|...+-+-+ |+..--..+.....+-.+.+.--++..-.++..|
T Consensus 300 ~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p 343 (449)
T 1b89_A 300 NAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP 343 (449)
T ss_dssp HHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG
T ss_pred HHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH
Confidence 9988766543 3322223344444555555544444333333333
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-17 Score=167.43 Aligned_cols=323 Identities=10% Similarity=-0.001 Sum_probs=208.8
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 006705 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLD 202 (634)
Q Consensus 123 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 202 (634)
|+..|..+...+.+.|++++|+..|+++.... +.+..++..+...+...|++++|...+..+++.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34566777777888888888888888877642 2245566666777777777777777777777654 345566666777
Q ss_pred HHHhcCCHHHHHHHHccCCCCC------hhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccch
Q 006705 203 MYAKAGRIHEARGVFECLPERD------VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAAL 276 (634)
Q Consensus 203 ~y~~~g~~~~A~~~~~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 276 (634)
.|.+.|++++|...|++....+ ...|..+...+. ...+......+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 7777777777777766654322 222222211000 00111223445555666
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006705 277 GHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMR 353 (634)
Q Consensus 277 ~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 353 (634)
++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...|...|++++|.+.|++..
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666665553 34556666677777777777777777776543 356677777777888888888888888777
Q ss_pred HcCCCCCCHHHHH------------HHHHHHhccCcHHHHHHHHHHhhhccCCccCC-h----HHHHHHHHHHHHcCCHH
Q 006705 354 EENKVKPDSVTYL------------AVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE-I----EHYGCVVDMLGRAGRVG 416 (634)
Q Consensus 354 ~~~g~~pd~~t~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~-~----~~~~~li~~~~~~g~~~ 416 (634)
+. .+.+...+. .+...+...|++++|...++.+.+. .|+ . ..+..+...|.+.|+++
T Consensus 216 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~la~~~~~~~~~~ 289 (359)
T 3ieg_A 216 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT----EPSVAEYTVRSKERICHCFSKDEKPV 289 (359)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSSHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCchHHHHHHHHHHHHHHHHccCHH
Confidence 65 122222222 2245577788888888888888764 232 2 23555777888888888
Q ss_pred HHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhh
Q 006705 417 EALEFIKNM-P-FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS 477 (634)
Q Consensus 417 ~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 477 (634)
+|.+.+++. . .+.+..+|..+...+...|++++|...++++.+++|+++..+..+..++..
T Consensus 290 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 290 EAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 888888776 2 233677788888888888888888888888888888877776666665543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.6e-17 Score=165.32 Aligned_cols=305 Identities=10% Similarity=0.024 Sum_probs=231.1
Q ss_pred hhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC---CChhhHHHHHHHH
Q 006705 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE---RDVVSCTAIISGY 235 (634)
Q Consensus 159 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~ 235 (634)
...+..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|...|+++.+ .+...|..+...|
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 3455666667777788888888887777764 44566777777777777777777777776542 3556777777777
Q ss_pred HhcCChHHHHHHHHHHhhcCCcc---Ch-hhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 006705 236 AQLGLDEEAIELFRKLQVEGMIS---NY-VTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSL 311 (634)
Q Consensus 236 ~~~g~~~~A~~~~~~m~~~g~~p---~~-~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 311 (634)
...|++++|+..|++..+. .| +. ..+..+... .. ...+..+...+...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~-------~~----------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKA-------DE----------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHccCH
Confidence 7777777777777777654 34 21 111111111 00 11223346788999999
Q ss_pred HHHHHHHhhcC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 006705 312 TYSRRVFDNMS---ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388 (634)
Q Consensus 312 ~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~ 388 (634)
++|...|+++. ..+...|..+...+...|++++|+..++++.+. .+.+..++..+...+...|++++|...++..
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999876 347788999999999999999999999999875 3556788899999999999999999999999
Q ss_pred hhccCCccCChHHHH------------HHHHHHHHcCCHHHHHHHHHhC-CCCCC-HH----HHHHHHHHHHhcCCchHH
Q 006705 389 VDCKDGFEPEIEHYG------------CVVDMLGRAGRVGEALEFIKNM-PFEPT-AA----ILGSLLGACRVHYNVDIG 450 (634)
Q Consensus 389 ~~~~~~~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~----~~~~ll~~~~~~~~~~~a 450 (634)
.+.. +.+...+. .+...+.+.|++++|.+.++++ ...|+ .. .+..+...+...|+++.|
T Consensus 215 ~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 215 LKLD---QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHHC---TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhC---ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 8642 22333333 3367799999999999999986 22333 32 244567889999999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 451 EFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 451 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
...++++.+..|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 292 IRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999764
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.2e-17 Score=163.73 Aligned_cols=286 Identities=11% Similarity=0.005 Sum_probs=185.9
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHH
Q 006705 192 SHIYVGSSLLDMYAKAGRIHEARGVFECLPE---RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLT 268 (634)
Q Consensus 192 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 268 (634)
.+..++..+...+...|++++|.++|+++.. .+...+..++..+...|++++|+.+++++.+.. +.+...+..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 3444445555555566666666666655432 233445555556666666666666666665542 223445555555
Q ss_pred HHhccc-chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHH
Q 006705 269 ALSGLA-ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGRE 344 (634)
Q Consensus 269 ~~~~~~-~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~ 344 (634)
.+...| ++++|...+..+.+.. +.+...+..+...|...|++++|...|+++.+ .+...|..+...|...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHH
Confidence 566666 6666666666665543 33455666677777777777777777766542 245566667777777777788
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCC------ccCChHHHHHHHHHHHHcCCHHHH
Q 006705 345 VVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG------FEPEIEHYGCVVDMLGRAGRVGEA 418 (634)
Q Consensus 345 A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~------~~p~~~~~~~li~~~~~~g~~~~A 418 (634)
|++.|++..+. .+.+..++..+...+...|++++|...++.+.+..+. .+.....+..+...|.+.|++++|
T Consensus 178 A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 178 AERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 88777777764 3344566777777777778888887777777653100 133456778888888888888888
Q ss_pred HHHHHhC-C-CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHH-hhcCCc
Q 006705 419 LEFIKNM-P-FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLY-ASAGRW 481 (634)
Q Consensus 419 ~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 481 (634)
...+++. . .+.+...|..+...+...|++++|...++++.++.|+++..+..++.+| ...|+.
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 8888775 1 1335667778888888888888888888888888888888888888877 455553
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-15 Score=161.46 Aligned_cols=210 Identities=7% Similarity=-0.006 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHh-------cCCHH-------HHHHHHhhcCC---C-ChhhHHHHHHHHHhc
Q 006705 278 HGKQVHSHVLRFEIPSYVVLQNSLIDMYSK-------CGSLT-------YSRRVFDNMSE---R-TVISWNAMLVGYSKH 339 (634)
Q Consensus 278 ~a~~i~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~f~~m~~---~-~~~~~~~li~~~~~~ 339 (634)
.+..+++.+++.. +.+..+|..++..+.+ .|+++ +|..+|++..+ | +...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 5667788777763 5567788888887775 68876 88999988763 3 577888888889999
Q ss_pred CChHHHHHHHHHHHHcCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHH-HHHcCCHH
Q 006705 340 GMGREVVELFNLMREENKVKPDS--VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM-LGRAGRVG 416 (634)
Q Consensus 340 g~~~~A~~~~~~m~~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~~ 416 (634)
|++++|.++|+++.+. .|+. ..|...+..+.+.|++++|..+|+...+.. +.+...|...+.+ +...|+.+
T Consensus 335 g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~---~~~~~~~~~~a~~~~~~~~~~~ 408 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA---RTRHHVYVTAALMEYYCSKDKS 408 (530)
T ss_dssp TCHHHHHHHHHHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT---TCCTHHHHHHHHHHHHHTCCHH
T ss_pred CCHHHHHHHHHHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc---CCchHHHHHHHHHHHHHcCChh
Confidence 9999999999998874 4542 477888888888889999999999988531 2233334333323 33688999
Q ss_pred HHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCc----hHHHHHHHHhhcCCcHHHHHHHHH
Q 006705 417 EALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAG----NYVILSNLYASAGRWEDVTRVREL 490 (634)
Q Consensus 417 ~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~ 490 (634)
+|..+|++. .. +.+...|..++......|+.+.|..+++++....|.++. .|...+....+.|+.+.+.++.++
T Consensus 409 ~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r 488 (530)
T 2ooe_A 409 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 488 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999875 22 235778888888888899999999999999888766554 666777778888999999988888
Q ss_pred HhhC
Q 006705 491 MKEK 494 (634)
Q Consensus 491 m~~~ 494 (634)
+.+.
T Consensus 489 ~~~~ 492 (530)
T 2ooe_A 489 RFTA 492 (530)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8653
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.9e-15 Score=157.63 Aligned_cols=365 Identities=11% Similarity=-0.004 Sum_probs=267.0
Q ss_pred ChhHHHHHHHHHHc----CCChHHHHHHHhhcCC-CCcchHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCChhhH
Q 006705 92 PVYLRTRLIVFYNK----CECLSDARKMFDEMRE-RNVVSWTAMISAYSQ----KAHSFEALNLFIRMLRSDTEPNEFTF 162 (634)
Q Consensus 92 ~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 162 (634)
+......|-..|.. .+++++|...|++..+ .+..++..|...|.. .+++++|+..|++....| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 45555566666665 6777777777766543 355667777777777 777777777777777654 44555
Q ss_pred HHHHHHHhc----cCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh----cCCHHHHHHHHccCCC-CChhhHHHHHH
Q 006705 163 ATVLTSCAG----AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAK----AGRIHEARGVFECLPE-RDVVSCTAIIS 233 (634)
Q Consensus 163 ~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~ 233 (634)
..+...+.. .+++++|...+....+.| +...+..|..+|.. .++.++|.+.|++..+ .+..++..+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 555556655 677788888887777765 45566667777776 6778888888876543 46667777777
Q ss_pred HHHh----cCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhc----ccchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 006705 234 GYAQ----LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG----LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMY 305 (634)
Q Consensus 234 ~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~ 305 (634)
.|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|...+....+.| +...+..|..+|
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 265 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL 265 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 7777 788888888888877654 34455555555554 678888888888877764 345666677777
Q ss_pred Hh----cCCHHHHHHHHhhcCC-CChhhHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcc
Q 006705 306 SK----CGSLTYSRRVFDNMSE-RTVISWNAMLVGYSKH-----GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG 375 (634)
Q Consensus 306 ~~----~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~ 375 (634)
.. .++.++|...|++..+ .+...+..+...|... +++++|+..|++..+. | +...+..+...+...
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~~ 341 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAIYFRL 341 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHS
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHHHHhC
Confidence 77 7889999999988765 3667777888888877 8999999999998886 4 345566666666665
Q ss_pred C---cHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 006705 376 G---MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR----AGRVGEALEFIKNMPFEPTAAILGSLLGACRV----H 444 (634)
Q Consensus 376 g---~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~ 444 (634)
| ++++|.++|+...+. + +...+..|..+|.. .+++++|.+.|++.....+...+..|...|.. .
T Consensus 342 g~~~~~~~A~~~~~~a~~~--~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~ 416 (490)
T 2xm6_A 342 GSEEEHKKAVEWFRKAAAK--G---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVE 416 (490)
T ss_dssp CCHHHHHHHHHHHHHHHHT--T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC
T ss_pred CCcccHHHHHHHHHHHHHC--C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCC
Confidence 6 788999999998864 3 67888889999988 89999999999987334467788888888887 8
Q ss_pred CCchHHHHHHHHHhccCCC---CCchHHHHHHHHhh
Q 006705 445 YNVDIGEFVGQRLMEIEPE---NAGNYVILSNLYAS 477 (634)
Q Consensus 445 ~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 477 (634)
++.++|...++++.+.+|+ ++.....|..++.+
T Consensus 417 ~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 417 RDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 9999999999999998854 55666666666554
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.9e-16 Score=156.68 Aligned_cols=265 Identities=11% Similarity=0.021 Sum_probs=231.2
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHH
Q 006705 223 RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302 (634)
Q Consensus 223 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li 302 (634)
.+...+..+...+...|++++|+++|+++.+.. +.+...+..+...+...|++++|..++..+.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 466677888889999999999999999998764 3455667778888899999999999999999875 55788899999
Q ss_pred HHHHhcC-CHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcH
Q 006705 303 DMYSKCG-SLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGME 378 (634)
Q Consensus 303 ~~~~~~g-~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~ 378 (634)
..|...| ++++|...|++..+ .+...|..+...|...|++++|++.|+++.+. .+.+..++..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHhhH
Confidence 9999999 99999999998764 36778999999999999999999999999886 233457777788899999999
Q ss_pred HHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC----C-------CCCCHHHHHHHHHHHHhcCCc
Q 006705 379 DRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM----P-------FEPTAAILGSLLGACRVHYNV 447 (634)
Q Consensus 379 ~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~-------~~p~~~~~~~ll~~~~~~~~~ 447 (634)
++|...++.+.+. .+.+...+..+...|.+.|++++|...+++. + .+.+..+|..+...+...|++
T Consensus 176 ~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 176 KLAERFFSQALSI---APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 9999999999863 3456789999999999999999999999876 1 033467899999999999999
Q ss_pred hHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 448 DIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 448 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
++|...++++.+..|+++..+..++.+|.+.|++++|.+.+++..+.
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999988653
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.4e-15 Score=161.02 Aligned_cols=399 Identities=9% Similarity=0.014 Sum_probs=290.6
Q ss_pred CHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC--CCcchHHHHHHHH
Q 006705 57 RFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE--RNVVSWTAMISAY 134 (634)
Q Consensus 57 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~ 134 (634)
|...|..++.. .+.|+++.|+.+++.+++.. +.+...|..++..+.+.|++++|.++|++... |++..|...+...
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 66778888874 67899999999999998763 55677899999999999999999999999876 7777888777533
Q ss_pred -HhCCChhHHHH----HHHHHHH-CCCCCC-hhhHHHHHHHHhc---------cCCcHHHHHHHHHHHHhCCCCchHHHH
Q 006705 135 -SQKAHSFEALN----LFIRMLR-SDTEPN-EFTFATVLTSCAG---------AFGFELGKQIHSLIIKSNFESHIYVGS 198 (634)
Q Consensus 135 -~~~g~~~~A~~----~~~~m~~-~g~~p~-~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~~ 198 (634)
...|+.++|.+ +|+.... .|..|+ ...|...+..... .|+++.|..++..+++........+|.
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 45677777665 6776654 355554 4455555554433 678899999999988731111123343
Q ss_pred HHHHHH-------------HhcCCHHHHHHHHcc-------CC------CCC--------hhhHHHHHHHHHhc----CC
Q 006705 199 SLLDMY-------------AKAGRIHEARGVFEC-------LP------ERD--------VVSCTAIISGYAQL----GL 240 (634)
Q Consensus 199 ~li~~y-------------~~~g~~~~A~~~~~~-------m~------~~~--------~~~~~~li~~~~~~----g~ 240 (634)
...... .+.++++.|..++.. +. .|+ ...|...+.....+ ++
T Consensus 170 ~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~ 249 (530)
T 2ooe_A 170 DYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTED 249 (530)
T ss_dssp HHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSC
T ss_pred HHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCc
Confidence 322211 123556777765543 11 122 34676666543332 23
Q ss_pred h----HHHHHHHHHHhhcCCccChhhHHHHHHHHhc-------ccchH-------HHHHHHHHHHHcCCCCchhHHHHHH
Q 006705 241 D----EEAIELFRKLQVEGMISNYVTYASVLTALSG-------LAALG-------HGKQVHSHVLRFEIPSYVVLQNSLI 302 (634)
Q Consensus 241 ~----~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~~~~~-------~a~~i~~~~~~~~~~~~~~~~~~li 302 (634)
. ++|+.+|++..... +-+...|......+.+ .|+++ +|..+++..++.-.+.+..++..++
T Consensus 250 ~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~ 328 (530)
T 2ooe_A 250 QTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYA 328 (530)
T ss_dssp SHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 2 47888999988752 3355667666666664 68877 8999999998743466788999999
Q ss_pred HHHHhcCCHHHHHHHHhhcCC--C-Ch-hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHH-HhccCc
Q 006705 303 DMYSKCGSLTYSRRVFDNMSE--R-TV-ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG-CSHGGM 377 (634)
Q Consensus 303 ~~~~~~g~~~~A~~~f~~m~~--~-~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a-~~~~g~ 377 (634)
..+.+.|++++|..+|+++.+ | +. ..|...+..+.+.|+.++|.++|++..+. .+.+...|...... +...|+
T Consensus 329 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~ 406 (530)
T 2ooe_A 329 DYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKD 406 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCC
T ss_pred HHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCC
Confidence 999999999999999998763 3 33 58999999999999999999999999875 22233333332222 335899
Q ss_pred HHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCchHHH
Q 006705 378 EDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM----PFEPT--AAILGSLLGACRVHYNVDIGE 451 (634)
Q Consensus 378 ~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~--~~~~~~ll~~~~~~~~~~~a~ 451 (634)
+++|..+|+...+.. +.+...|..+++.+.+.|+.++|..+|++. +..|+ ...|...+.....+|+.+.+.
T Consensus 407 ~~~A~~~~e~al~~~---p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~ 483 (530)
T 2ooe_A 407 KSVAFKIFELGLKKY---GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 483 (530)
T ss_dssp HHHHHHHHHHHHHHH---TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHH
T ss_pred hhHHHHHHHHHHHHC---CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999998742 346889999999999999999999999986 22332 558999999999999999999
Q ss_pred HHHHHHhccCCC
Q 006705 452 FVGQRLMEIEPE 463 (634)
Q Consensus 452 ~~~~~~~~~~p~ 463 (634)
.+..++.+..|+
T Consensus 484 ~~~~r~~~~~p~ 495 (530)
T 2ooe_A 484 KVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHTHH
T ss_pred HHHHHHHHHCch
Confidence 999999998885
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-16 Score=162.79 Aligned_cols=280 Identities=10% Similarity=-0.032 Sum_probs=213.1
Q ss_pred hcCCHHHHHH-HHccCCC---C----ChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchH
Q 006705 206 KAGRIHEARG-VFECLPE---R----DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALG 277 (634)
Q Consensus 206 ~~g~~~~A~~-~~~~m~~---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 277 (634)
-.|++++|.. .|++... . +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3467777777 6664432 1 34567778888888888888888888887753 345567777777888888888
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHH---------------HHHHHHhc
Q 006705 278 HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE--R-TVISWNA---------------MLVGYSKH 339 (634)
Q Consensus 278 ~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~---------------li~~~~~~ 339 (634)
+|...+..+++.. +.+..++..+...|.+.|++++|...|+++.. | +...+.. .+..+...
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 8888888887775 45677788888888888888888888887653 2 2222221 23334488
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHH
Q 006705 340 GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419 (634)
Q Consensus 340 g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 419 (634)
|++++|+..|+++.+...-.++..++..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999886211125788899999999999999999999999864 2445789999999999999999999
Q ss_pred HHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC-----------CchHHHHHHHHhhcCCcHHHHH
Q 006705 420 EFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN-----------AGNYVILSNLYASAGRWEDVTR 486 (634)
Q Consensus 420 ~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~ 486 (634)
..++++ .. +.+..+|..+...+...|++++|...++++.++.|++ ...|..++.+|...|++++|..
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 999986 22 3467889999999999999999999999999988876 6789999999999999999999
Q ss_pred HHHH
Q 006705 487 VREL 490 (634)
Q Consensus 487 ~~~~ 490 (634)
++++
T Consensus 352 ~~~~ 355 (368)
T 1fch_A 352 ADAR 355 (368)
T ss_dssp HHTT
T ss_pred hHHH
Confidence 8763
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-16 Score=161.36 Aligned_cols=257 Identities=12% Similarity=0.048 Sum_probs=131.9
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCC---CCChhhHHHHHHHHHhc
Q 006705 162 FATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP---ERDVVSCTAIISGYAQL 238 (634)
Q Consensus 162 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~ 238 (634)
+..+...+...|++++|...+..+++.. +.+..++..+...|.+.|++++|.+.|+++. ..+..+|..+...|...
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 145 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNE 145 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 3333333444444444444444444332 2233444444455555555555555554332 12444555555556666
Q ss_pred CChHHHHHHHHHHhhcCCccChh-hHHH---------------HHHHHhcccchHHHHHHHHHHHHcCCCC-chhHHHHH
Q 006705 239 GLDEEAIELFRKLQVEGMISNYV-TYAS---------------VLTALSGLAALGHGKQVHSHVLRFEIPS-YVVLQNSL 301 (634)
Q Consensus 239 g~~~~A~~~~~~m~~~g~~p~~~-t~~~---------------ll~~~~~~~~~~~a~~i~~~~~~~~~~~-~~~~~~~l 301 (634)
|++++|+..|+++.... |+.. .+.. .+..+...|++++|...+..+.+..... +..++..+
T Consensus 146 g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l 223 (368)
T 1fch_A 146 SLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 223 (368)
T ss_dssp TCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHH
Confidence 66666666666555432 2211 1110 1222235666666666666666554221 35556666
Q ss_pred HHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcH
Q 006705 302 IDMYSKCGSLTYSRRVFDNMS---ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGME 378 (634)
Q Consensus 302 i~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~ 378 (634)
...|.+.|++++|...|+++. ..+..+|..+...|...|++++|+..|+++.+. .+.+..++..+..++...|++
T Consensus 224 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~ 301 (368)
T 1fch_A 224 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAH 301 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCH
Confidence 666666666666666666544 224556666666666666666666666666554 223445566666666666666
Q ss_pred HHHHHHHHHhhhccCCc-c-------CChHHHHHHHHHHHHcCCHHHHHHHHH
Q 006705 379 DRGLAVFHEIVDCKDGF-E-------PEIEHYGCVVDMLGRAGRVGEALEFIK 423 (634)
Q Consensus 379 ~~a~~~~~~~~~~~~~~-~-------p~~~~~~~li~~~~~~g~~~~A~~~~~ 423 (634)
++|...|+.+.+..+.. . .....|..+..+|.+.|+.++|..+++
T Consensus 302 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 302 REAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 66666666665421000 0 013555666666666666666655554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-16 Score=160.82 Aligned_cols=262 Identities=10% Similarity=-0.054 Sum_probs=209.9
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 006705 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303 (634)
Q Consensus 224 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 303 (634)
+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+...+...|++++|...+..+++.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888888999999999999999988764 4466778888888889999999999999888875 556788888999
Q ss_pred HHHhcCCHHHHHHHHhhcCC--C-C----------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 006705 304 MYSKCGSLTYSRRVFDNMSE--R-T----------VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370 (634)
Q Consensus 304 ~~~~~g~~~~A~~~f~~m~~--~-~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~ 370 (634)
.|.+.|++++|...|+++.+ | + ...+..+...+.+.|++++|++.|+++.+...-.++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 99999999999999988763 2 1 223344578899999999999999999886211126788999999
Q ss_pred HHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCch
Q 006705 371 GCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVD 448 (634)
Q Consensus 371 a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~ 448 (634)
.+...|++++|...|+.+.+. .+.+..+|..+...|.+.|++++|...|+++ .. +.+..+|..+..++...|+++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 999999999999999999864 2446889999999999999999999999986 22 345788999999999999999
Q ss_pred HHHHHHHHHhccCCC------------CCchHHHHHHHHhhcCCcHHHHHHHHH
Q 006705 449 IGEFVGQRLMEIEPE------------NAGNYVILSNLYASAGRWEDVTRVREL 490 (634)
Q Consensus 449 ~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 490 (634)
+|...+++++++.|+ +...+..|..++...|+.+.+.++.+.
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999988776 356788999999999999998887654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.5e-14 Score=149.48 Aligned_cols=353 Identities=13% Similarity=0.016 Sum_probs=296.3
Q ss_pred CCCcchHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhc----cCCcHHHHHHHHHHHHhCCCC
Q 006705 121 ERNVVSWTAMISAYSQ----KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG----AFGFELGKQIHSLIIKSNFES 192 (634)
Q Consensus 121 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~ 192 (634)
..+..++..+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|...+....+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 3577788888888888 899999999999998865 55677777777877 899999999999998876
Q ss_pred chHHHHHHHHHHHh----cCCHHHHHHHHccCCC-CChhhHHHHHHHHHh----cCChHHHHHHHHHHhhcCCccChhhH
Q 006705 193 HIYVGSSLLDMYAK----AGRIHEARGVFECLPE-RDVVSCTAIISGYAQ----LGLDEEAIELFRKLQVEGMISNYVTY 263 (634)
Q Consensus 193 ~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 263 (634)
+...+..|..+|.. .+++++|.+.|++..+ .+..++..+...|.. .+++++|++.|++..+.| +...+
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 56677778999998 8899999999988654 467788888888887 789999999999998865 56677
Q ss_pred HHHHHHHhc----ccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhhcCC-CChhhHHHHHH
Q 006705 264 ASVLTALSG----LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSK----CGSLTYSRRVFDNMSE-RTVISWNAMLV 334 (634)
Q Consensus 264 ~~ll~~~~~----~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~-~~~~~~~~li~ 334 (634)
..+-..+.. .++.++|...+....+.| +...+..|..+|.. .++.++|...|++..+ .+..++..+..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 263 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGY 263 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777777776 889999999999999876 56677888888886 8899999999998765 46778888888
Q ss_pred HHHh----cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHhhhccCCccCChHHHHHH
Q 006705 335 GYSK----HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG-----GMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405 (634)
Q Consensus 335 ~~~~----~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 405 (634)
.|.. .+++++|++.|++..+. | +...+..+...+... +++++|...|+...+. + +...+..|
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~---~~~a~~~l 334 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQ-G---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--G---DATAQANL 334 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTT-T---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--T---CHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHc-C---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--C---CHHHHHHH
Confidence 8888 89999999999999876 3 445666677777766 8999999999999875 3 56788889
Q ss_pred HHHHHHcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCchHHHHHHHHHhccCCCCCchHHHHHHHHhh-
Q 006705 406 VDMLGRAG---RVGEALEFIKNMPFEPTAAILGSLLGACRV----HYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS- 477 (634)
Q Consensus 406 i~~~~~~g---~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~- 477 (634)
..+|.+.| ++++|++.|++.-...+...+..|...|.. .+++++|...++++.+.+ ++..+..|+.+|..
T Consensus 335 g~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g 412 (490)
T 2xm6_A 335 GAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYG 412 (490)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcC
Confidence 99998867 789999999987334678889999999988 899999999999998865 46789999999998
Q ss_pred ---cCCcHHHHHHHHHHhhCCC
Q 006705 478 ---AGRWEDVTRVRELMKEKAV 496 (634)
Q Consensus 478 ---~g~~~~A~~~~~~m~~~~~ 496 (634)
.+++++|.+.+++..+.+.
T Consensus 413 ~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 413 LGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHCCC
Confidence 8999999999999987763
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.2e-16 Score=159.19 Aligned_cols=259 Identities=10% Similarity=-0.012 Sum_probs=148.3
Q ss_pred hHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC---CChhhHHHHHHHHHh
Q 006705 161 TFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE---RDVVSCTAIISGYAQ 237 (634)
Q Consensus 161 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~ 237 (634)
.+..+...+...|++++|...++.+++.. +.+..++..+..+|.+.|++++|.+.|++... .+..+|..+...|..
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN 145 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Confidence 35555555555555555555555555543 34555666666677777777777776665532 345677777777777
Q ss_pred cCChHHHHHHHHHHhhcCCccCh-h----------hHHHHHHHHhcccchHHHHHHHHHHHHcCCC-CchhHHHHHHHHH
Q 006705 238 LGLDEEAIELFRKLQVEGMISNY-V----------TYASVLTALSGLAALGHGKQVHSHVLRFEIP-SYVVLQNSLIDMY 305 (634)
Q Consensus 238 ~g~~~~A~~~~~~m~~~g~~p~~-~----------t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~-~~~~~~~~li~~~ 305 (634)
.|++++|+..|+++.+.. |+. . .+..+...+...|++++|...+..+++.... .+..++..+...|
T Consensus 146 ~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp TTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 777777777777776642 221 1 1222345566666666666666666665422 1455666666666
Q ss_pred HhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 006705 306 SKCGSLTYSRRVFDNMS---ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGL 382 (634)
Q Consensus 306 ~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 382 (634)
.+.|++++|...|+++. ..+..+|+.+...|.+.|++++|++.|+++.+. .+.+..++..+..+|...|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHH
Confidence 66666666666666554 234556666666666666666666666666654 2233556666666666666666666
Q ss_pred HHHHHhhhccCCcc---------CChHHHHHHHHHHHHcCCHHHHHHHHHh
Q 006705 383 AVFHEIVDCKDGFE---------PEIEHYGCVVDMLGRAGRVGEALEFIKN 424 (634)
Q Consensus 383 ~~~~~~~~~~~~~~---------p~~~~~~~li~~~~~~g~~~~A~~~~~~ 424 (634)
..|+.+.+..+... .+...|..+...+...|+.+.|.++..+
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 66666654310100 0244555566666666666655555544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.71 E-value=7.2e-14 Score=155.41 Aligned_cols=380 Identities=12% Similarity=0.062 Sum_probs=282.8
Q ss_pred hhHHHHHHHHhccCCchHHHHHHHHHHHhC--CCCChhHHHHHHHHHHcCCChHHHHHHHhhcCCCCcchHHHHHHHHHh
Q 006705 59 EEYDTLLNACVNQRTLRGGQRVHAHMIKTC--YRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136 (634)
Q Consensus 59 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 136 (634)
.--....++|...|.+.++.++++.++-.+ +..+....+.|+.+..+. +..+.....++...-+ ...+...+..
T Consensus 986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~ 1061 (1630)
T 1xi4_A 986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAIS 1061 (1630)
T ss_pred HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHh
Confidence 334566777888888888888888887432 123445666677666666 4455555554444222 4557778888
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 006705 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216 (634)
Q Consensus 137 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 216 (634)
.|.+++|..+|++.. -.....+.++. ..+++++|.++..++ .+..+|..+..++.+.|++++|.+.
T Consensus 1062 lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred CCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999998852 11222233332 667888888887754 3477888999999999999999999
Q ss_pred HccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchh
Q 006705 217 FECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV 296 (634)
Q Consensus 217 ~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~ 296 (634)
|.+. .|...|..++..+.+.|++++|++.|...++.. ++....+.+..+|++.++++....+. + .++..
T Consensus 1128 YiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~a 1196 (1630)
T 1xi4_A 1128 YIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNA 1196 (1630)
T ss_pred HHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHH
Confidence 9664 677888899999999999999999998877654 34333445888899998888644442 2 34556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccC
Q 006705 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376 (634)
Q Consensus 297 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g 376 (634)
.+..+.+.|...|++++|...|... ..|..+...|.+.|++++|++.+++. .+..+|..+-.+|...|
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~ 1264 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGK 1264 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhh
Confidence 6667999999999999999999986 58999999999999999999999866 25688999999999999
Q ss_pred cHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--CCchHHHH
Q 006705 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEP-TAAILGSLLGACRVH--YNVDIGEF 452 (634)
Q Consensus 377 ~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~--~~~~~a~~ 452 (634)
++..|......+ ..+++.+..++..|.+.|.+++|+.+++.. ...| ....|+-|...+.+. ++..++.+
T Consensus 1265 Ef~LA~~cgl~I-------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A 1265 EFRLAQMCGLHI-------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred HHHHHHHHHHhh-------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999998765543 336778889999999999999999999875 3333 344565555555544 44556666
Q ss_pred HHHHHhccCC-----CCCchHHHHHHHHhhcCCcHHHHH
Q 006705 453 VGQRLMEIEP-----ENAGNYVILSNLYASAGRWEDVTR 486 (634)
Q Consensus 453 ~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~ 486 (634)
.+..-..+.| .+...|.-++-+|.+.|.|+.|..
T Consensus 1338 ~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1338 LFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 6666666655 466789999999999999999985
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.8e-15 Score=143.91 Aligned_cols=267 Identities=8% Similarity=-0.024 Sum_probs=202.1
Q ss_pred HHhcCCHHHHHHHHccCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHH
Q 006705 204 YAKAGRIHEARGVFECLPERDV----VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHG 279 (634)
Q Consensus 204 y~~~g~~~~A~~~~~~m~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 279 (634)
....|++..|+..++.....++ ...-.+..+|...|++++|+..++. .-+|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 3446777777777776554332 2334566777777777777765543 1345666777777777777777888
Q ss_pred HHHHHHHHHcCC-CCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 006705 280 KQVHSHVLRFEI-PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358 (634)
Q Consensus 280 ~~i~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~ 358 (634)
.+.++.++..+. +.+...+..+...|.+.|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+.
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--- 159 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--- 159 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---
Confidence 888877777653 44566677788889999999999999998 567889999999999999999999999999986
Q ss_pred CCCHHHH---HHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHH
Q 006705 359 KPDSVTY---LAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAI 433 (634)
Q Consensus 359 ~pd~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~ 433 (634)
.|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..+|.+.|++++|.+.+++. .. +.+..+
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK---CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 3664311 22334445679999999999999974 3568899999999999999999999999986 22 346778
Q ss_pred HHHHHHHHHhcCCchH-HHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHH
Q 006705 434 LGSLLGACRVHYNVDI-GEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTR 486 (634)
Q Consensus 434 ~~~ll~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 486 (634)
|..++..+...|+.++ +..+++++.+++|+++. +.+...+.+.++++..
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~----~~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF----IKEYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHHHH
Confidence 9999999999999976 57899999999999764 3345555555555544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.1e-15 Score=155.95 Aligned_cols=217 Identities=10% Similarity=0.016 Sum_probs=120.2
Q ss_pred chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHh-------------
Q 006705 275 ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE--R-TVISWNAMLVGYSK------------- 338 (634)
Q Consensus 275 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~------------- 338 (634)
+.++|.+.+....+.. +.+..++..+...|.+.|++++|...|++..+ | +..+|..+...|..
T Consensus 228 ~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~ 306 (472)
T 4g1t_A 228 EEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGM 306 (472)
T ss_dssp --CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4444555555444433 33344444555555555555555555554431 1 23333333333321
Q ss_pred ------cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCCh--HHHHHHHHH-H
Q 006705 339 ------HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEI--EHYGCVVDM-L 409 (634)
Q Consensus 339 ------~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~--~~~~~li~~-~ 409 (634)
.+..++|+..|++..+. -+.+..++..+...+...|++++|...|+...+. ...|.. ..+..+... +
T Consensus 307 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~--~~~~~~~~~~~~~~~~~~~ 382 (472)
T 4g1t_A 307 YGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEAEYYFQKEFSK--ELTPVAKQLLHLRYGNFQL 382 (472)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHH
Confidence 23367788888888775 2344567788888999999999999999998864 222221 123333332 3
Q ss_pred HHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHH
Q 006705 410 GRAGRVGEALEFIKNM-PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVR 488 (634)
Q Consensus 410 ~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 488 (634)
...|+.++|+..|.+. .+.|+...+...+ ..+..++++.++.+|+++.+|..|+.+|...|++++|.+.+
T Consensus 383 ~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y 453 (472)
T 4g1t_A 383 YQMKCEDKAIHHFIEGVKINQKSREKEKMK---------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDS 453 (472)
T ss_dssp HTSSCHHHHHHHHHHHHHSCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------
T ss_pred HHCCCHHHHHHHHHHHHhcCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4678999999999875 5556654443333 34456777888899999999999999999999999999999
Q ss_pred HHHhhCCCccCCceeEE
Q 006705 489 ELMKEKAVTKDPGRSWI 505 (634)
Q Consensus 489 ~~m~~~~~~~~~~~s~~ 505 (634)
++..+.+-..+...+|+
T Consensus 454 ~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 454 ERGLESGSLIPSASSWN 470 (472)
T ss_dssp -----------------
T ss_pred HHHHhcCCCCCcHhhcC
Confidence 99988765444445564
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-15 Score=152.50 Aligned_cols=219 Identities=12% Similarity=0.024 Sum_probs=63.2
Q ss_pred ccchhhhcccchhhhhcCCCCCCCChhhHHHhhhcCcHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCchHHHHHHHHH
Q 006705 5 KKQSRAFSSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHM 84 (634)
Q Consensus 5 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 84 (634)
|+.++|.+.++.... ...|..+..++.+.|+..++.+...+ .+|..+|..++.+|...|++++|...+...
T Consensus 17 ~~ld~A~~fae~~~~------~~vWs~La~A~l~~g~~~eAIdsfik---a~D~~~y~~V~~~ae~~g~~EeAi~yl~~a 87 (449)
T 1b89_A 17 GNLDRAYEFAERCNE------PAVWSQLAKAQLQKGMVKEAIDSYIK---ADDPSSYMEVVQAANTSGNWEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCCC------hHHHHHHHHHHHHcCCHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 445555555555421 13555556666666655544333332 245556666666666666666666655555
Q ss_pred HHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHH
Q 006705 85 IKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFAT 164 (634)
Q Consensus 85 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 164 (634)
.+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|.+++|..+|..+ ..|..
T Consensus 88 rk~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~ 153 (449)
T 1b89_A 88 RKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGR 153 (449)
T ss_dssp -----------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHH
T ss_pred HHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHH
Confidence 443 33455566666666666666666655542 55556666666666666666666666654 24556
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHH
Q 006705 165 VLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEA 244 (634)
Q Consensus 165 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 244 (634)
+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++++|
T Consensus 154 LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEa 226 (449)
T 1b89_A 154 LASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEEL 226 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHH
Confidence 666666666666666665554 245566666666666666666655555443 2333333455566666666666
Q ss_pred HHHHHHHhh
Q 006705 245 IELFRKLQV 253 (634)
Q Consensus 245 ~~~~~~m~~ 253 (634)
+.+++....
T Consensus 227 i~lLe~aL~ 235 (449)
T 1b89_A 227 ITMLEAALG 235 (449)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhC
Confidence 666655543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.7e-15 Score=150.91 Aligned_cols=258 Identities=10% Similarity=-0.038 Sum_probs=176.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 006705 227 SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYS 306 (634)
Q Consensus 227 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~ 306 (634)
.|..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|...+..+.+.. +.+..++..+...|.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 34444444455555555555555544432 2233344444444555555555555555554443 334445555555555
Q ss_pred hcCCHHHHHHHHhhcCC--C-ChhhHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 006705 307 KCGSLTYSRRVFDNMSE--R-TVISWNAM--------------LV-GYSKHGMGREVVELFNLMREENKVKPDSVTYLAV 368 (634)
Q Consensus 307 ~~g~~~~A~~~f~~m~~--~-~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~l 368 (634)
+.|++++|.+.|+++.+ | +...+..+ .. .+...|++++|++.++++.+. .+.+..++..+
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l 178 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--NPNDAQLHASL 178 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--STTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--CCCCHHHHHHH
Confidence 55555555555555432 1 22222222 22 367778899999999998876 34467888888
Q ss_pred HHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCC
Q 006705 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYN 446 (634)
Q Consensus 369 l~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~ 446 (634)
...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ .. +.+..+|..+...+...|+
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 88999999999999999998864 2446788999999999999999999999886 22 3467788899999999999
Q ss_pred chHHHHHHHHHhccCCC------------CCchHHHHHHHHhhcCCcHHHHHHHHHH
Q 006705 447 VDIGEFVGQRLMEIEPE------------NAGNYVILSNLYASAGRWEDVTRVRELM 491 (634)
Q Consensus 447 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 491 (634)
+++|...++++.+..|. ++..+..++.+|.+.|++++|.++++..
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999988 6788999999999999999999988754
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.68 E-value=7.6e-13 Score=147.34 Aligned_cols=379 Identities=11% Similarity=0.022 Sum_probs=290.8
Q ss_pred CHhhHHHHHHHHhccCCchHHHHHHHHHHHhCC--CCChhHHHHHHHHHHcCCChHHHHHHHhhcCC-CC-----cchHH
Q 006705 57 RFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY--RPPVYLRTRLIVFYNKCECLSDARKMFDEMRE-RN-----VVSWT 128 (634)
Q Consensus 57 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~-----~~~~~ 128 (634)
|...|..++.- +-+.=+++.++.....+ ..++.--...+..|...|...+|.+++++..- ++ ...-|
T Consensus 952 d~~lW~~vl~~-----~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~Lqn 1026 (1630)
T 1xi4_A 952 DPELWGSVLLE-----SNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQN 1026 (1630)
T ss_pred CHHHHHHHhcC-----CcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHH
Confidence 55555555521 12333455555554442 22344446778899999999999999998763 22 34566
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC
Q 006705 129 AMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG 208 (634)
Q Consensus 129 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 208 (634)
.++....+. +..+..+...+.-. ....-+...|...|.+++|..+|++.. ......+.++ -..|
T Consensus 1027 lLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~ 1090 (1630)
T 1xi4_A 1027 LLILTAIKA-DRTRVMEYINRLDN-------YDAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIG 1090 (1630)
T ss_pred HHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHh
Confidence 677777776 55666666665532 223446777889999999999998852 1222223333 2788
Q ss_pred CHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHH
Q 006705 209 RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288 (634)
Q Consensus 209 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 288 (634)
++++|.++.++.. +..+|..+..++.+.|++++|++.|.+. -|...|..++.+|.+.|+++++.+.+....+
T Consensus 1091 nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk 1162 (1630)
T 1xi4_A 1091 NLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARK 1162 (1630)
T ss_pred hHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999874 4678999999999999999999999663 4677888999999999999999999998887
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 006705 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAV 368 (634)
Q Consensus 289 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~l 368 (634)
.. +++.+.+.++.+|+|.+++++..... ..++...|..+...|...|++++|..+|... ..|..+
T Consensus 1163 ~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rL 1227 (1630)
T 1xi4_A 1163 KA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRL 1227 (1630)
T ss_pred hc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHH
Confidence 65 44444556999999999999655443 4567778888999999999999999999875 268999
Q ss_pred HHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCch
Q 006705 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448 (634)
Q Consensus 369 l~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~ 448 (634)
..++.+.|++++|.+.+++.. +..+|..+..+|...|++..|........ .+...+..++..|...|.++
T Consensus 1228 A~tLvkLge~q~AIEaarKA~--------n~~aWkev~~acve~~Ef~LA~~cgl~Ii--v~~deLeeli~yYe~~G~fe 1297 (1630)
T 1xi4_A 1228 ASTLVHLGEYQAAVDGARKAN--------STRTWKEVCFACVDGKEFRLAQMCGLHIV--VHADELEELINYYQDRGYFE 1297 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHhC--------CHHHHHHHHHHHhhhhHHHHHHHHHHhhh--cCHHHHHHHHHHHHHcCCHH
Confidence 999999999999999998763 56899999999999999999999887643 34556678999999999999
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHhhc--CCcHHHHHHHH
Q 006705 449 IGEFVGQRLMEIEPENAGNYVILSNLYASA--GRWEDVTRVRE 489 (634)
Q Consensus 449 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~ 489 (634)
+|..+++..++++|.+...|.-|..+|++- ++..++.+.|.
T Consensus 1298 EAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1298 ELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999998888888888888765 45555655555
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.5e-17 Score=176.30 Aligned_cols=130 Identities=8% Similarity=0.038 Sum_probs=118.0
Q ss_pred ChhHHHHHHHHHHcCCChHHHHHHHhhcC-------CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHH
Q 006705 92 PVYLRTRLIVFYNKCECLSDARKMFDEMR-------ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFAT 164 (634)
Q Consensus 92 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 164 (634)
-..+||+||++|+++|++++|.++|++|. .||++|||+||++|++.|+.++|+++|++|...|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34589999999999999999999998764 48999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCc-HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCC
Q 006705 165 VLTSCAGAFGF-ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221 (634)
Q Consensus 165 ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 221 (634)
+|.++++.|+. +.|.+++++|.+.|+.||..+|+++++.+.+.+-++...+++..+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~ 263 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFS 263 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccC
Confidence 99999999985 7899999999999999999999999998888776666666655553
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.8e-17 Score=176.03 Aligned_cols=132 Identities=12% Similarity=0.178 Sum_probs=111.9
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC-------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHH
Q 006705 291 IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-------ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363 (634)
Q Consensus 291 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~ 363 (634)
...-..+||+||++|+++|++++|.++|+.|. .||++|||+||.||++.|+.++|.++|++|.+. |+.||.+
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~~PDvv 201 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPDLL 201 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCcHH
Confidence 34456789999999999999999999997653 579999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHhccCcH-HHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006705 364 TYLAVLSGCSHGGME-DRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425 (634)
Q Consensus 364 t~~~ll~a~~~~g~~-~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 425 (634)
||+++|.++++.|.. ++|.++|++|.+. |+.||..+|++++....+.+-++...++...+
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~k--G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQE--GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHH--TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHc--CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 999999999998874 7888999999987 99999999999998887776555555554443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-14 Score=144.71 Aligned_cols=264 Identities=11% Similarity=-0.009 Sum_probs=161.9
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 006705 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDM 203 (634)
Q Consensus 124 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 203 (634)
...|..+...+...|++++|+.+|+++.... +.+..++..+...+...|++++|...+..+++.. +.+.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~--------- 89 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDI--------- 89 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH---------
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCH---------
Confidence 3445555666666666666666666665532 1233444445555555555555555555555442 2233
Q ss_pred HHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChh-hHHHH-------------HH-
Q 006705 204 YAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYV-TYASV-------------LT- 268 (634)
Q Consensus 204 y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~l-------------l~- 268 (634)
.+|..+...|...|++++|++.|+++.... |+.. .+..+ ..
T Consensus 90 ----------------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (327)
T 3cv0_A 90 ----------------------AVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSED 145 (327)
T ss_dssp ----------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------
T ss_pred ----------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHh
Confidence 344444555555555555555555554431 2211 11111 02
Q ss_pred -HHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChHH
Q 006705 269 -ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS---ERTVISWNAMLVGYSKHGMGRE 344 (634)
Q Consensus 269 -~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~ 344 (634)
.+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++. ..+...|..+...|...|++++
T Consensus 146 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 224 (327)
T 3cv0_A 146 FFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQE 224 (327)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Confidence 2566777777777777777664 3456777777778888888888888877664 2356677788888888888888
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCc---------cCChHHHHHHHHHHHHcCCH
Q 006705 345 VVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF---------EPEIEHYGCVVDMLGRAGRV 415 (634)
Q Consensus 345 A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~---------~p~~~~~~~li~~~~~~g~~ 415 (634)
|++.|+++.+. .+.+..++..+...+...|++++|...++.+.+..+.. ..+...|..+..+|.+.|++
T Consensus 225 A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (327)
T 3cv0_A 225 ALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP 302 (327)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCH
Confidence 88888887765 23456677777778888888888888888777532110 00366777788888888888
Q ss_pred HHHHHHHHhC
Q 006705 416 GEALEFIKNM 425 (634)
Q Consensus 416 ~~A~~~~~~m 425 (634)
++|..++++.
T Consensus 303 ~~A~~~~~~~ 312 (327)
T 3cv0_A 303 DLVELTYAQN 312 (327)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHHHHH
Confidence 8888777654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-13 Score=133.87 Aligned_cols=243 Identities=8% Similarity=-0.024 Sum_probs=185.4
Q ss_pred HHcCCChHHHHHHHhhcCCCCc----chHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHH
Q 006705 103 YNKCECLSDARKMFDEMRERNV----VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178 (634)
Q Consensus 103 y~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 178 (634)
....|.+..|+..++.....+. ...-.+..+|...|++++|+..++.. -.|+..++..+...+...++.+.|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHH
Confidence 3456899999999987765332 34456778999999999999866542 355677888888889999999999
Q ss_pred HHHHHHHHHhCC-CCchHHHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCc
Q 006705 179 KQIHSLIIKSNF-ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257 (634)
Q Consensus 179 ~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 257 (634)
.+.++.+++.+. +.+..++..+...|...|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+..
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-- 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD-- 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--
Confidence 999999988764 44567777888999999999999999998 4678899999999999999999999999998863
Q ss_pred cChhhHHHHH----HHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHH
Q 006705 258 SNYVTYASVL----TALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWN 330 (634)
Q Consensus 258 p~~~t~~~ll----~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~ 330 (634)
|+.. ...+. ..+...|++++|..++..+.+.. +.+..+++.+..+|.+.|++++|...|++..+ .+..+|.
T Consensus 161 p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 161 EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 5543 22222 33334578888888888888773 56777777777788888888888887777552 3566777
Q ss_pred HHHHHHHhcCChHH-HHHHHHHHHHc
Q 006705 331 AMLVGYSKHGMGRE-VVELFNLMREE 355 (634)
Q Consensus 331 ~li~~~~~~g~~~~-A~~~~~~m~~~ 355 (634)
.++..+...|+.++ +.++++++.+.
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 77777777777765 45677777654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-13 Score=144.66 Aligned_cols=381 Identities=10% Similarity=-0.047 Sum_probs=225.5
Q ss_pred CCHhhHHHHHHHHhccCCchHHHHHHHHHHHh-----C---CCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC------
Q 006705 56 MRFEEYDTLLNACVNQRTLRGGQRVHAHMIKT-----C---YRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE------ 121 (634)
Q Consensus 56 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g---~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~------ 121 (634)
.....|+.+-..+...|+.++|.+.++..++. + .+....+|+.+...|...|++++|...+++..+
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34556888888888899999999998877653 1 122345678888889999999999888876532
Q ss_pred ----C-CcchHHHHHHHHHh--CCChhHHHHHHHHHHHCCCCCCh-hhHHHHHHH---HhccCCcHHHHHHHHHHHHhCC
Q 006705 122 ----R-NVVSWTAMISAYSQ--KAHSFEALNLFIRMLRSDTEPNE-FTFATVLTS---CAGAFGFELGKQIHSLIIKSNF 190 (634)
Q Consensus 122 ----~-~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~---~~~~~~~~~a~~~~~~~~~~g~ 190 (634)
+ ...+++.+..++.. .+++++|+..|++.... .|+. ..+..+..+ +...++.++|.+.+..+++..
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 1 23455555555554 35688999999988774 4543 333333333 345677788888888888765
Q ss_pred CCchHHHHHHHHHHHhc----CCHHHHHHHHccCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccCh-hh
Q 006705 191 ESHIYVGSSLLDMYAKA----GRIHEARGVFECLP---ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNY-VT 262 (634)
Q Consensus 191 ~~~~~~~~~li~~y~~~----g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t 262 (634)
+.+..++..+...+... |+.++|.+.|++.. ..+..+|+.+...|...|++++|+..|.+..+. .|+. .+
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~ 283 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYL 283 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHH
Confidence 44556666565555543 56778888887653 346677888888899999999999999888775 3443 34
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhc
Q 006705 263 YASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS---ERTVISWNAMLVGYSKH 339 (634)
Q Consensus 263 ~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~ 339 (634)
+..+...+...+.... ... ...........+..+.|...|++.. ..+..+|..+...|...
T Consensus 284 ~~~lg~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHh
Confidence 4444333322111000 000 0001111112234567777777654 34667889999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHH--HHHHHHH-HHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHH
Q 006705 340 GMGREVVELFNLMREENKVKPDSV--TYLAVLS-GCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416 (634)
Q Consensus 340 g~~~~A~~~~~~m~~~~g~~pd~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 416 (634)
|++++|++.|++..+. ...|... .+..+.. .....|+.++|+..|.+..+. .|+........ +
T Consensus 348 ~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i----~~~~~~~~~~~---------~ 413 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI----NQKSREKEKMK---------D 413 (472)
T ss_dssp TCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS----CCCCHHHHHHH---------H
T ss_pred ccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CcccHHHHHHH---------H
Confidence 9999999999998876 3333221 2222222 245789999999999998853 45543332222 2
Q ss_pred HHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHH
Q 006705 417 EALEFIKNM--PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVIL 471 (634)
Q Consensus 417 ~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 471 (634)
.+.+++++. ..+.+..+|..|...+...|++++|...++++++++|.+|.++.-+
T Consensus 414 ~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 414 KLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 233333332 1234667899999999999999999999999999999877665544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.3e-13 Score=129.10 Aligned_cols=225 Identities=10% Similarity=-0.024 Sum_probs=160.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 006705 226 VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMY 305 (634)
Q Consensus 226 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~ 305 (634)
..|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...+..+++.....
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------------ 71 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM------------ 71 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc------------
Confidence 345556666666666666666666666554 444445555555555555555555544443321000
Q ss_pred HhcCCHHHHHHHHhhcCCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHH
Q 006705 306 SKCGSLTYSRRVFDNMSERT----VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRG 381 (634)
Q Consensus 306 ~~~g~~~~A~~~f~~m~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a 381 (634)
.++ ...|..+...|...|++++|++.|++..+. .|+. ..+...|++++|
T Consensus 72 -----------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~-------~~~~~~~~~~~a 124 (258)
T 3uq3_A 72 -----------------RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE---HRTA-------DILTKLRNAEKE 124 (258)
T ss_dssp -----------------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCH-------HHHHHHHHHHHH
T ss_pred -----------------ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc---Cchh-------HHHHHHhHHHHH
Confidence 011 456777788888888888888888888775 3453 235556788889
Q ss_pred HHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhc
Q 006705 382 LAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLME 459 (634)
Q Consensus 382 ~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 459 (634)
...++.+... .+.+...+..+...|.+.|++++|...+++. ..+.+..+|..+...+...|++++|...++++++
T Consensus 125 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 125 LKKAEAEAYV---NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHHC---CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc---CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9888888863 2345677888888899999999999998886 2234677888888999999999999999999999
Q ss_pred cCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 460 IEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 460 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
..|+++..|..++.+|.+.|++++|.+.++...+.
T Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99998899999999999999999999999988654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.9e-13 Score=130.83 Aligned_cols=217 Identities=13% Similarity=0.024 Sum_probs=130.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHccCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCc--cC----hhhHHH
Q 006705 194 IYVGSSLLDMYAKAGRIHEARGVFECLPE--RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI--SN----YVTYAS 265 (634)
Q Consensus 194 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~----~~t~~~ 265 (634)
...+..+...|...|++++|...|++..+ .+...|..+...|...|++++|+..|.+..+.... |+ ..++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 46788899999999999999999986532 67889999999999999999999999998864211 12 356666
Q ss_pred HHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCCh
Q 006705 266 VLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER---TVISWNAMLVGYSKHGMG 342 (634)
Q Consensus 266 ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~ 342 (634)
+...+...|++++|...+..+.+.. |+ ...+.+.|++++|...++++... +...|..+...+...|++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH
Confidence 6677777777777777777776653 22 12344445555555555544321 233444445555555555
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHH
Q 006705 343 REVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422 (634)
Q Consensus 343 ~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 422 (634)
++|+..|++..+. .+.+..++..+..++...|++++|...++.+.+.. +.+...|..+...|.+.|++++|.+.+
T Consensus 156 ~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 156 PNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD---PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 5555555555443 12233444444444555555555555555544321 222344444444444444444444444
Q ss_pred Hh
Q 006705 423 KN 424 (634)
Q Consensus 423 ~~ 424 (634)
++
T Consensus 231 ~~ 232 (258)
T 3uq3_A 231 DA 232 (258)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.5e-13 Score=126.62 Aligned_cols=196 Identities=13% Similarity=0.016 Sum_probs=154.8
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 006705 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAV 368 (634)
Q Consensus 292 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~l 368 (634)
|++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+. -+.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 56677788888889999999999999988653 36778888999999999999999999999876 23345778888
Q ss_pred HHHHhcc-----------CcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 006705 369 LSGCSHG-----------GMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTAAILGS 436 (634)
Q Consensus 369 l~a~~~~-----------g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ 436 (634)
..++... |++++|...++...+.. +-+...+..+...|...|++++|++.|++. ....+...|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN---PRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8888888 99999999999998642 335788999999999999999999999986 11168889999
Q ss_pred HHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 437 LLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 437 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
+..++...|++++|...++++++++|+++..+..++.+|.+.|++++|.+.+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999887653
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.9e-12 Score=133.64 Aligned_cols=214 Identities=10% Similarity=0.031 Sum_probs=124.0
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCCh---HHHHHHHhhcCCCCcchHHHHHHHHHhCC--
Q 006705 64 LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECL---SDARKMFDEMRERNVVSWTAMISAYSQKA-- 138 (634)
Q Consensus 64 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g-- 138 (634)
+...+.+.|++++|.+++....+.| +...+..|-.+|...|+. ++|...|++..+.+...+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 4555667889999999999998886 344555666777777887 89999998887777778888887666665
Q ss_pred ---ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCc---HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC----
Q 006705 139 ---HSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGF---ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG---- 208 (634)
Q Consensus 139 ---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---- 208 (634)
++++|+..|++....|.. ..+..+...+...+.. ..+.+.+....+.| +......|...|...+
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 778999999999887643 2555555555544433 33444555555444 3445566777777777
Q ss_pred CHHHHHHHHccCCCCChhhHHHHHHHHHhcC---ChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcc----cchHHHHH
Q 006705 209 RIHEARGVFECLPERDVVSCTAIISGYAQLG---LDEEAIELFRKLQVEGMISNYVTYASVLTALSGL----AALGHGKQ 281 (634)
Q Consensus 209 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----~~~~~a~~ 281 (634)
..+.+..+++.....++.++..|...|...| +.++|++.|++..+.| .++...+..+-..|... ++.++|..
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 4556666677766667778888888888888 7888888888887766 33443333444444332 45555555
Q ss_pred HHHHHH
Q 006705 282 VHSHVL 287 (634)
Q Consensus 282 i~~~~~ 287 (634)
.+....
T Consensus 239 ~~~~aa 244 (452)
T 3e4b_A 239 LLEKIA 244 (452)
T ss_dssp HHHHHG
T ss_pred HHHHHc
Confidence 555554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=7.5e-13 Score=128.11 Aligned_cols=241 Identities=10% Similarity=-0.050 Sum_probs=175.1
Q ss_pred hcCChHHHHHHHHHHhhcCC---ccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 006705 237 QLGLDEEAIELFRKLQVEGM---ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTY 313 (634)
Q Consensus 237 ~~g~~~~A~~~~~~m~~~g~---~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 313 (634)
..|++++|+..|+++.+... +.+..++..+...+...|++++|...+..+++.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 34667777777777776421 1134556666777777777777777777777764 4467777888888888888888
Q ss_pred HHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 006705 314 SRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390 (634)
Q Consensus 314 A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 390 (634)
|...|++..+ .+...|..+...|.+.|++++|++.|+++.+. .|+.......+..+...|++++|...++....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 8888887663 36778888888899999999999999988875 35554444455556677899999999987776
Q ss_pred ccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC
Q 006705 391 CKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPT-----AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN 464 (634)
Q Consensus 391 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 464 (634)
. .+++...+. ++..+...++.++|.+.+.+. ...|+ ...|..+...+...|++++|...++++.+..|++
T Consensus 173 ~---~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 173 K---SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp H---SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred c---CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence 3 234444443 677777788888899888876 22222 4678888899999999999999999999999876
Q ss_pred CchHHHHHHHHhhcCCcHHHHHHH
Q 006705 465 AGNYVILSNLYASAGRWEDVTRVR 488 (634)
Q Consensus 465 ~~~~~~l~~~~~~~g~~~~A~~~~ 488 (634)
... ...++...|++++|.+.+
T Consensus 249 ~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHH---HHHHHHHHHHHHHC----
T ss_pred HHH---HHHHHHHHHHHHhhHHHH
Confidence 443 466777888888887765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.9e-12 Score=125.17 Aligned_cols=239 Identities=10% Similarity=-0.002 Sum_probs=118.7
Q ss_pred HHHHHHHhcCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccCh--hhHHHHHHHHhcc
Q 006705 199 SLLDMYAKAGRIHEARGVFECLPE---RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNY--VTYASVLTALSGL 273 (634)
Q Consensus 199 ~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~ 273 (634)
.....|...|++++|...|++..+ .+...|..+...|...|++++|+..|++..+..-.|+. ..|..+...+...
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 345556666666666666665432 23445666666666666666666666666552211111 1244455555555
Q ss_pred cchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHH
Q 006705 274 AALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFN 350 (634)
Q Consensus 274 ~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 350 (634)
|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|++..+ .+...|..+...+...+++++|++.|+
T Consensus 88 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555543 22334444455555555555555555544442 123333333312222234444444444
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCC---HHHHHHHHHhC--
Q 006705 351 LMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR---VGEALEFIKNM-- 425 (634)
Q Consensus 351 ~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-- 425 (634)
+..+. .| .+...+..+...+...|+ +++|...+++.
T Consensus 167 ~a~~~---~p------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 167 KVLEL---KP------------------------------------NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp HHHHH---ST------------------------------------TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred HHHHh---Cc------------------------------------cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 44433 11 123344444444444444 33344333332
Q ss_pred --CCCCC------HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhh
Q 006705 426 --PFEPT------AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS 477 (634)
Q Consensus 426 --~~~p~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 477 (634)
...|+ ..+|..+...+...|+++.|...++++++++|+++.+...+..+...
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 00122 13555666777777788888888888888888876666655555443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.46 E-value=6.3e-12 Score=119.93 Aligned_cols=196 Identities=7% Similarity=-0.088 Sum_probs=148.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 006705 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMS---ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG 371 (634)
Q Consensus 295 ~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a 371 (634)
...+..+...|...|++++|...|+++. ..+...|..+...|...|++++|++.|+++.+. .+.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHH
Confidence 4556667777777778777777777664 235667777788888888888888888887775 23456677777778
Q ss_pred HhccCcHHHHHHHHHHhhhccCCccC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCch
Q 006705 372 CSHGGMEDRGLAVFHEIVDCKDGFEP-EIEHYGCVVDMLGRAGRVGEALEFIKNM-P-FEPTAAILGSLLGACRVHYNVD 448 (634)
Q Consensus 372 ~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~ 448 (634)
+...|++++|..+++.+.+. +..| +...+..+...|.+.|++++|.+.++++ . .+.+...|..+...+...|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQD--TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHhC--ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHH
Confidence 88888888888888887752 3344 4667777888888888888888888775 2 1335677778888888888888
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 449 IGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 449 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
+|...++++.+..|.+...+..++.+|...|++++|.+.++.+.+.
T Consensus 193 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 193 PARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-12 Score=122.12 Aligned_cols=170 Identities=12% Similarity=0.048 Sum_probs=91.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccC
Q 006705 300 SLIDMYSKCGSLTYSRRVFDNMS---ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376 (634)
Q Consensus 300 ~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g 376 (634)
.+...|.+.|++++|...|+++. ..+...|..+...|...|++++|++.|+++.+. .+.+...+..+...+...|
T Consensus 62 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~ 139 (243)
T 2q7f_A 62 NFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLE 139 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhc
Confidence 33334444444444444444332 123445555555555666666666666665554 2334455555555566666
Q ss_pred cHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHH
Q 006705 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDIGEFVG 454 (634)
Q Consensus 377 ~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 454 (634)
++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ..+.+..+|..+...+...|++++|...+
T Consensus 140 ~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 216 (243)
T 2q7f_A 140 QPKLALPYLQRAVEL---NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEML 216 (243)
T ss_dssp CHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 666666666665542 1234555566666666666666666666554 11234555666666666666666666666
Q ss_pred HHHhccCCCCCchHHHHHHH
Q 006705 455 QRLMEIEPENAGNYVILSNL 474 (634)
Q Consensus 455 ~~~~~~~p~~~~~~~~l~~~ 474 (634)
+++.++.|+++..+..+..+
T Consensus 217 ~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 217 DKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHccCcchHHHHHHHHHH
Confidence 66666666655554444333
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=5.2e-12 Score=122.11 Aligned_cols=239 Identities=12% Similarity=-0.084 Sum_probs=154.2
Q ss_pred hCCChhHHHHHHHHHHHCCCC--C-ChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHH
Q 006705 136 QKAHSFEALNLFIRMLRSDTE--P-NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212 (634)
Q Consensus 136 ~~g~~~~A~~~~~~m~~~g~~--p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 212 (634)
..|++++|+..|+++...... | +..++..+...+...|++++|...+..+++.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346677777777777764321 1 34456666677777777777777777777764 4456777778888888888888
Q ss_pred HHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHc
Q 006705 213 ARGVFECLPE---RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF 289 (634)
Q Consensus 213 A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~ 289 (634)
|.+.|++... .+..+|..+...|.+.|++++|+..|+++.+. .|+.......+..+...|++++|...+......
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888876543 35677888888888888888888888888764 455544444555556667888888888776665
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH
Q 006705 290 EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT-------VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362 (634)
Q Consensus 290 ~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~ 362 (634)
. +++...+. ++..+...++.++|...+.+....+ ...|..+...|.+.|++++|...|++.... .|+.
T Consensus 174 ~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~ 248 (275)
T 1xnf_A 174 S-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN---NVHN 248 (275)
T ss_dssp S-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCTT
T ss_pred C-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---Cchh
Confidence 4 33333333 5666666677777777777666432 356666777777777777777777776653 3422
Q ss_pred -HHHHHHHHHHhccCcHHHHHHHH
Q 006705 363 -VTYLAVLSGCSHGGMEDRGLAVF 385 (634)
Q Consensus 363 -~t~~~ll~a~~~~g~~~~a~~~~ 385 (634)
..+ ..++...|++++|.+.+
T Consensus 249 ~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHH---HHHHHHHHHHHHC----
T ss_pred HHHH---HHHHHHHHHHHhhHHHH
Confidence 222 33444555555555443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-11 Score=115.75 Aligned_cols=197 Identities=8% Similarity=0.002 Sum_probs=138.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 006705 294 YVVLQNSLIDMYSKCGSLTYSRRVFDNMS---ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370 (634)
Q Consensus 294 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~ 370 (634)
+..++..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+. .+.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHHHH
Confidence 44556666667777777777777776654 234567777777777777777777777777765 2335566777777
Q ss_pred HHhcc-CcHHHHHHHHHHhhhccCCccC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCC
Q 006705 371 GCSHG-GMEDRGLAVFHEIVDCKDGFEP-EIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYN 446 (634)
Q Consensus 371 a~~~~-g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~ 446 (634)
.+... |++++|...++.+.+. +..| +...+..+...|.+.|++++|.+.++++ .. +.+...|..+...+...|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALAD--PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTS--TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCcHHHHHHHHHHHHcC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 77777 7888888877777752 2333 3566777777777888888887777765 11 2346677777777778888
Q ss_pred chHHHHHHHHHhccCC-CCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 447 VDIGEFVGQRLMEIEP-ENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 447 ~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
+++|...++++.+..| .++..+..+...+...|+.++|..+++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 8888888888877777 77777777777777888888888877777543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-09 Score=117.95 Aligned_cols=423 Identities=10% Similarity=0.026 Sum_probs=286.4
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCC---hHHHHHHHhhcC
Q 006705 44 KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC---LSDARKMFDEMR 120 (634)
Q Consensus 44 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---~~~A~~~~~~~~ 120 (634)
..|++-..... -|..+|..++..+.+.+.++.++.+|+.++.. ++.....|...+..-.+.|. ++.+..+|++..
T Consensus 53 ~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal 130 (679)
T 4e6h_A 53 GKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCL 130 (679)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Confidence 34555555543 48899999999999999999999999999987 46677888999998888888 999999999875
Q ss_pred C-----CCcchHHHHHHHHHhCCCh--------hHHHHHHHHHHH-CCC-CCCh-hhHHHHHHHHhc---------cCCc
Q 006705 121 E-----RNVVSWTAMISAYSQKAHS--------FEALNLFIRMLR-SDT-EPNE-FTFATVLTSCAG---------AFGF 175 (634)
Q Consensus 121 ~-----~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~~-~t~~~ll~~~~~---------~~~~ 175 (634)
. |++..|...+.-..+.++. +...++|+..+. .|. .|+. ..|...+..... .+++
T Consensus 131 ~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~ 210 (679)
T 4e6h_A 131 SKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRV 210 (679)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHH
Confidence 4 7788898888766555543 234477777654 466 6654 455555544322 2346
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHh-------------cCCHHHHHHHHcc-------CC----C---------
Q 006705 176 ELGKQIHSLIIKSNFESHIYVGSSLLDMYAK-------------AGRIHEARGVFEC-------LP----E--------- 222 (634)
Q Consensus 176 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-------------~g~~~~A~~~~~~-------m~----~--------- 222 (634)
+.++.+|..++......-..+|......--. ..+++.|...+.+ +. .
T Consensus 211 ~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~ 290 (679)
T 4e6h_A 211 QYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESN 290 (679)
T ss_dssp HHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTT
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhcc
Confidence 7788888888753211112333221111100 1123334444432 11 0
Q ss_pred -C--C------hhhHHHHHHHHHhcCC-------hHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHH-HHHHH
Q 006705 223 -R--D------VVSCTAIISGYAQLGL-------DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGK-QVHSH 285 (634)
Q Consensus 223 -~--~------~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~-~i~~~ 285 (634)
| + ...|...+.---.++. .+.+..+|++.... .+-+...|.....-+...|+.+.|. .+++.
T Consensus 291 ~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~r 369 (679)
T 4e6h_A 291 LPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKL 369 (679)
T ss_dssp SCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 0 0 1346666654333321 23455678877765 3445666767777777788888996 99999
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-------------CC------------hhhHHHHHHHHHhcC
Q 006705 286 VLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE-------------RT------------VISWNAMLVGYSKHG 340 (634)
Q Consensus 286 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-------------~~------------~~~~~~li~~~~~~g 340 (634)
.+.. .|.+..++-.++....+.|+++.|.++|+++.+ |+ ...|...+....+.|
T Consensus 370 Ai~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~ 448 (679)
T 4e6h_A 370 GQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQ 448 (679)
T ss_dssp HHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcC
Confidence 9875 356777788889999999999999999998763 21 236888888888889
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHH
Q 006705 341 MGREVVELFNLMREENKVKPDSVTYLAVLSGCSH-GGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419 (634)
Q Consensus 341 ~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 419 (634)
..+.|..+|.+..+. -..+....|......-.+ .++.+.|..+|+...+. ++.+...+...++.....|+.+.|.
T Consensus 449 ~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~---~p~~~~~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 449 GLAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY---FATDGEYINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp CHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---CCCchHHHHHHHHHHHhCCCHHHHH
Confidence 999999999998874 111222333322222222 35689999999999874 3456777888899888999999999
Q ss_pred HHHHhC-CCCC----CHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHH
Q 006705 420 EFIKNM-PFEP----TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLY 475 (634)
Q Consensus 420 ~~~~~m-~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 475 (634)
.+|++. ...| ....|...+..-..+|+.+.+..+.+++.+..|+++ ....+++-|
T Consensus 525 ~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~-~~~~f~~ry 584 (679)
T 4e6h_A 525 SLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN-KLEEFTNKY 584 (679)
T ss_dssp HHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC-HHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-HHHHHHHHh
Confidence 999986 2223 346889999999999999999999999999999863 334444444
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.2e-12 Score=117.14 Aligned_cols=193 Identities=12% Similarity=-0.006 Sum_probs=104.1
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 006705 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLD 202 (634)
Q Consensus 123 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 202 (634)
+...|..+...+.+.|++++|+..|++..... +.+...+..+...+...|++++|...++.+++.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 44556666666666677777777666666532 1244555556666666666666666666666654 344555666666
Q ss_pred HHHhc-----------CCHHHHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHH
Q 006705 203 MYAKA-----------GRIHEARGVFECLPE---RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLT 268 (634)
Q Consensus 203 ~y~~~-----------g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 268 (634)
.|.+. |++++|...|++..+ .+...|..+...|.+.|++++|+..|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 66666 666666666655432 234455556666666666666666666665554 44455555555
Q ss_pred HHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 006705 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDN 320 (634)
Q Consensus 269 ~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 320 (634)
++...|++++|...++.+++.. |.+...+..+...|.+.|++++|...|++
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 5555555555555555555543 33444455555555555555555555543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.7e-11 Score=116.93 Aligned_cols=205 Identities=13% Similarity=-0.001 Sum_probs=119.0
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 006705 225 VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDM 304 (634)
Q Consensus 225 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 304 (634)
...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.+..+.+.. +.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~----------- 103 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SR----------- 103 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-----------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cC-----------
Confidence 4567777788888888888888888877653 2234455555555555555555555555555443 22
Q ss_pred HHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHhccCcHHHHHH
Q 006705 305 YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD-SVTYLAVLSGCSHGGMEDRGLA 383 (634)
Q Consensus 305 ~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~ 383 (634)
+...|..+...|...|++++|++.|+++.+. +..|+ ...+..+...+...|++++|..
T Consensus 104 --------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~ 162 (252)
T 2ho1_A 104 --------------------NARVLNNYGGFLYEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKE 162 (252)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------------cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 3344445555555555555555555555542 23332 3445555555566666666666
Q ss_pred HHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccC
Q 006705 384 VFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-P-FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIE 461 (634)
Q Consensus 384 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 461 (634)
.++.+.+.. +.+...+..+...|.+.|++++|...++++ . .+.+...+..+...+...|+.+.|...++++.+..
T Consensus 163 ~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 163 YFEKSLRLN---RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHC---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 666655421 223555666666666666666666666654 1 12344555566666666666777776666766666
Q ss_pred CCCCc
Q 006705 462 PENAG 466 (634)
Q Consensus 462 p~~~~ 466 (634)
|+++.
T Consensus 240 p~~~~ 244 (252)
T 2ho1_A 240 PGSLE 244 (252)
T ss_dssp TTSHH
T ss_pred CCCHH
Confidence 66543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.43 E-value=2e-11 Score=117.87 Aligned_cols=229 Identities=8% Similarity=-0.041 Sum_probs=180.8
Q ss_pred hhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC--CCh----hhHHHHH
Q 006705 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE--RDV----VSCTAII 232 (634)
Q Consensus 159 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~----~~~~~li 232 (634)
...+......+...|++++|...+..+++.. +.+..++..+...|.+.|++++|.+.|++... ++. .+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3455666778889999999999999999875 44566888899999999999999999987654 222 2488999
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHH-HHHHhcCCH
Q 006705 233 SGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI-DMYSKCGSL 311 (634)
Q Consensus 233 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li-~~~~~~g~~ 311 (634)
..|...|++++|+..|++..+.. +.+...+..+...+...|++++|...+..+++.. +.+..++..+. ..|. .+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~~ 158 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKEY 158 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHHH
Confidence 99999999999999999998863 3455788899999999999999999999998874 55677777777 5555 4699
Q ss_pred HHHHHHHhhcCC---CChhhHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCCCH------HHHHHHHHHHhccCcHH
Q 006705 312 TYSRRVFDNMSE---RTVISWNAMLVGYSKHGM---GREVVELFNLMREENKVKPDS------VTYLAVLSGCSHGGMED 379 (634)
Q Consensus 312 ~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~g~~pd~------~t~~~ll~a~~~~g~~~ 379 (634)
++|.+.|+++.+ .+...|..+...+...|+ +++|...|++..+...-.|+. .+|..+...+...|+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 999999998763 356778888888888888 888999998887652223442 45666667777778888
Q ss_pred HHHHHHHHhhhc
Q 006705 380 RGLAVFHEIVDC 391 (634)
Q Consensus 380 ~a~~~~~~~~~~ 391 (634)
+|...++.+.+.
T Consensus 239 ~A~~~~~~al~~ 250 (272)
T 3u4t_A 239 KADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 888888777753
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=3.3e-12 Score=121.00 Aligned_cols=197 Identities=11% Similarity=0.012 Sum_probs=156.3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 006705 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369 (634)
Q Consensus 293 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll 369 (634)
.....+..+...+...|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+. .+.+..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHH
Confidence 3455667778888899999999999988753 36788999999999999999999999999886 344678888899
Q ss_pred HHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCc
Q 006705 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-P-FEPTAAILGSLLGACRVHYNV 447 (634)
Q Consensus 370 ~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~ 447 (634)
..+...|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.++++ . .+.+...|..+...+...|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRA---GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCH
Confidence 9999999999999999999874 2457888999999999999999999999986 2 234678889999999999999
Q ss_pred hHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 448 DIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 448 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
+.|...++++.+..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 176 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 176 DEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999764
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=5.9e-11 Score=114.82 Aligned_cols=225 Identities=10% Similarity=-0.065 Sum_probs=132.1
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhc----ccchHHHHHHHHHHHHcCCCCchhHHH
Q 006705 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG----LAALGHGKQVHSHVLRFEIPSYVVLQN 299 (634)
Q Consensus 224 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~i~~~~~~~~~~~~~~~~~ 299 (634)
+..++..+...|...|++++|+..|++..+.+ +...+..+...+.. .+++++|...+....+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 34455555555666666666666666655522 23344444445555 555556665555555544 444555
Q ss_pred HHHHHHHh----cCCHHHHHHHHhhcCC-CChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 006705 300 SLIDMYSK----CGSLTYSRRVFDNMSE-RTVISWNAMLVGYSK----HGMGREVVELFNLMREENKVKPDSVTYLAVLS 370 (634)
Q Consensus 300 ~li~~~~~----~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~ 370 (634)
.+..+|.. .+++++|...|++..+ .+..++..+...|.. .+++++|++.|++..+. + +...+..+..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 55556666 6666666666665443 245566666666666 67777777777776665 3 3445555555
Q ss_pred HHhc----cCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006705 371 GCSH----GGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR----AGRVGEALEFIKNMPFEPTAAILGSLLGACR 442 (634)
Q Consensus 371 a~~~----~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 442 (634)
.+.. .+++++|...|+...+. + +...+..+..+|.+ .+++++|++.+++.-...+...+..+...+.
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~--~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~ 229 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDL--K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQY 229 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT--T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC--C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 5555 66777777777776653 2 34566666666766 6777777777666411123455555556666
Q ss_pred h----cCCchHHHHHHHHHhccCCC
Q 006705 443 V----HYNVDIGEFVGQRLMEIEPE 463 (634)
Q Consensus 443 ~----~~~~~~a~~~~~~~~~~~p~ 463 (634)
. .+++++|...++++.+.+|+
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred cCCCcccCHHHHHHHHHHHHHcCCH
Confidence 5 66666666666666666654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.5e-11 Score=113.20 Aligned_cols=209 Identities=11% Similarity=-0.037 Sum_probs=128.2
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 006705 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303 (634)
Q Consensus 224 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 303 (634)
+...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...+..+.+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------- 72 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK------------- 72 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------------
Confidence 34566666777777777777777777766542 2223344444444444444444444444444332
Q ss_pred HHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHhccCcHHHH
Q 006705 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKH-GMGREVVELFNLMREENKVKPD-SVTYLAVLSGCSHGGMEDRG 381 (634)
Q Consensus 304 ~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a 381 (634)
..+...|..+...|... |++++|+..|+++.+. +..|+ ...+..+..++...|++++|
T Consensus 73 -------------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A 132 (225)
T 2vq2_A 73 -------------------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLA 132 (225)
T ss_dssp -------------------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHH
T ss_pred -------------------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHH
Confidence 12445566666666667 7777777777776653 33343 35566666677777777777
Q ss_pred HHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-C-CCHHHHHHHHHHHHhcCCchHHHHHHHHHh
Q 006705 382 LAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-E-PTAAILGSLLGACRVHYNVDIGEFVGQRLM 458 (634)
Q Consensus 382 ~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 458 (634)
...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ .. + .+...+..+...+...|+.+.+...++.+.
T Consensus 133 ~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 133 EAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 7777777653 1234666777777777777777777777765 11 2 355566666666777777777777777777
Q ss_pred ccCCCCCchHH
Q 006705 459 EIEPENAGNYV 469 (634)
Q Consensus 459 ~~~p~~~~~~~ 469 (634)
+..|+++....
T Consensus 210 ~~~p~~~~~~~ 220 (225)
T 2vq2_A 210 ANFPYSEELQT 220 (225)
T ss_dssp HHCTTCHHHHH
T ss_pred HhCCCCHHHHH
Confidence 77777655443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.9e-11 Score=127.43 Aligned_cols=186 Identities=8% Similarity=-0.064 Sum_probs=127.7
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHhhcCC---CChhhHHHHHHHHHhc----CChHHHHHHHHHHHHcCCCCCCHHHHH
Q 006705 297 LQNSLIDMYSKCG---SLTYSRRVFDNMSE---RTVISWNAMLVGYSKH----GMGREVVELFNLMREENKVKPDSVTYL 366 (634)
Q Consensus 297 ~~~~li~~~~~~g---~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~g~~pd~~t~~ 366 (634)
.+..|..+|.+.| +.++|.+.|++..+ ++...+..+...|... +++++|++.|++.. . | +...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~-g---~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P-G---YPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G-G---STHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C-C---CHHHHH
Confidence 5566666666666 66666666665542 2333334555555443 57788888888776 4 3 233344
Q ss_pred HHHHH-H--hccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcC-----CHHHHHHHHHhCCCCCCHHHHHHHH
Q 006705 367 AVLSG-C--SHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAG-----RVGEALEFIKNMPFEPTAAILGSLL 438 (634)
Q Consensus 367 ~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~p~~~~~~~ll 438 (634)
.+... + ...+++++|..+|+...+. | +...+..|..+|. .| ++++|.+.|++.. ..+...+..|.
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg 325 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAA--D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLG 325 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHT--T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHC--C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHH
Confidence 44433 2 4578888888888888764 4 6667777777777 45 8889999998887 66777777777
Q ss_pred HHHHh----cCCchHHHHHHHHHhccCCCCCchHHHHHHHHhh----cCCcHHHHHHHHHHhhCCC
Q 006705 439 GACRV----HYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS----AGRWEDVTRVRELMKEKAV 496 (634)
Q Consensus 439 ~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 496 (634)
..|.. ..+.++|...++++.+.+ ++.....|+.+|.. ..+.++|...++...+.|.
T Consensus 326 ~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 326 QIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 66665 348888998888887754 45778888888875 3588899999999887764
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.41 E-value=1.7e-11 Score=123.90 Aligned_cols=246 Identities=10% Similarity=0.058 Sum_probs=176.4
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccc-hHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 006705 225 VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA-LGHGKQVHSHVLRFEIPSYVVLQNSLID 303 (634)
Q Consensus 225 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~i~~~~~~~~~~~~~~~~~~li~ 303 (634)
...|+.+...+.+.|++++|+..|++..... +-+...|..+..++...|+ +++|...+..+++.. +.+..+|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3467777777788888888888888887653 2234556667777777775 888888888777765 456777788888
Q ss_pred HHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-cCcHH
Q 006705 304 MYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH-GGMED 379 (634)
Q Consensus 304 ~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~-~g~~~ 379 (634)
+|.+.|++++|...|+++.+ .+...|..+..++.+.|++++|++.|+++.+. -+-+...|..+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 88888888888888887762 46778888888888888888888888888875 23355777777777777 55546
Q ss_pred HH-----HHHHHHhhhccCCccCChHHHHHHHHHHHHcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC------
Q 006705 380 RG-----LAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAG--RVGEALEFIKNMPFEP-TAAILGSLLGACRVHY------ 445 (634)
Q Consensus 380 ~a-----~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~~------ 445 (634)
+| +..++..++.. +-+...|+.+..+|.+.| ++++|++.+.++...| +...+..+...+...|
T Consensus 253 eA~~~~el~~~~~Al~l~---P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV---PHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 66 47777777531 235667888888888777 5788888877763333 4566777777777653
Q ss_pred ---CchHHHHHHHHH-hccCCCCCchHHHHHHHHhh
Q 006705 446 ---NVDIGEFVGQRL-MEIEPENAGNYVILSNLYAS 477 (634)
Q Consensus 446 ---~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 477 (634)
..++|..+++++ .+++|.....|..++..+..
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 247788888888 88888877777766665543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=8e-11 Score=113.84 Aligned_cols=224 Identities=7% Similarity=-0.073 Sum_probs=194.5
Q ss_pred ChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhhcCC-CChhhHHHHH
Q 006705 259 NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSK----CGSLTYSRRVFDNMSE-RTVISWNAML 333 (634)
Q Consensus 259 ~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~-~~~~~~~~li 333 (634)
+..++..+-..+...+++++|...+....+. .+...+..+...|.. .|++++|...|++..+ .+..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4456677777888899999999999999983 456778889999999 9999999999998764 4778899999
Q ss_pred HHHHh----cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHhhhccCCccCChHHHHHH
Q 006705 334 VGYSK----HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH----GGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405 (634)
Q Consensus 334 ~~~~~----~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 405 (634)
..|.. .+++++|++.|++..+. + +...+..+...+.. .+++++|...|+...+. + +...+..+
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~---~~~a~~~l 152 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDL-K---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL--N---DGDGCTIL 152 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--T---CHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHc-C---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc--C---cHHHHHHH
Confidence 99999 99999999999999887 4 67788888888888 99999999999999875 4 57788889
Q ss_pred HHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCchHHHHHHHHHhccCCCCCchHHHHHHHHhh
Q 006705 406 VDMLGR----AGRVGEALEFIKNMPFEPTAAILGSLLGACRV----HYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS 477 (634)
Q Consensus 406 i~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 477 (634)
...|.. .+++++|...+++.-...+...+..+...+.. .+++++|...++++.+.+| +..+..|+.+|.+
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYN 230 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHc
Confidence 999998 99999999999987323467788888899999 9999999999999999877 5788999999999
Q ss_pred ----cCCcHHHHHHHHHHhhCCC
Q 006705 478 ----AGRWEDVTRVRELMKEKAV 496 (634)
Q Consensus 478 ----~g~~~~A~~~~~~m~~~~~ 496 (634)
.|++++|.+.+++..+.|.
T Consensus 231 g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCCcccCHHHHHHHHHHHHHcCC
Confidence 9999999999999987653
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.37 E-value=2.4e-11 Score=122.87 Aligned_cols=227 Identities=9% Similarity=0.006 Sum_probs=192.6
Q ss_pred hhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC-HHHHHHHHhhcCC---CChhhHHHHHHHH
Q 006705 261 VTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS-LTYSRRVFDNMSE---RTVISWNAMLVGY 336 (634)
Q Consensus 261 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~f~~m~~---~~~~~~~~li~~~ 336 (634)
..|..+...+...|++++|...+..+++.. +.+..+|+.+...|.+.|+ +++|...|+++.+ .+...|+.+...+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 356667777888999999999999999886 5678899999999999997 9999999998873 4778999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHH-cCCH
Q 006705 337 SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR-AGRV 415 (634)
Q Consensus 337 ~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~ 415 (634)
...|++++|+..|+++.+. -+-+...|..+..++...|++++|+..++.+++.. +-+...|+.+..+|.+ .|..
T Consensus 177 ~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~---P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999986 34466889999999999999999999999999642 3468899999999999 6776
Q ss_pred HHH-----HHHHHhC-CCC-CCHHHHHHHHHHHHhcC--CchHHHHHHHHHhccCCCCCchHHHHHHHHhhcC-------
Q 006705 416 GEA-----LEFIKNM-PFE-PTAAILGSLLGACRVHY--NVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG------- 479 (634)
Q Consensus 416 ~~A-----~~~~~~m-~~~-p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------- 479 (634)
++| ++.|++. ... .+...|..+...+...| ++++|...+.++ +.+|+++..+..|+++|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 777 4667665 223 46778999999898888 689999999888 899999899999999999875
Q ss_pred --CcHHHHHHHHHH-hhC
Q 006705 480 --RWEDVTRVRELM-KEK 494 (634)
Q Consensus 480 --~~~~A~~~~~~m-~~~ 494 (634)
.+++|.++++++ .+.
T Consensus 331 ~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 331 EDILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 358999999998 543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.34 E-value=1e-11 Score=127.97 Aligned_cols=265 Identities=12% Similarity=-0.016 Sum_probs=149.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCC--C-Ch----hhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHH
Q 006705 197 GSSLLDMYAKAGRIHEARGVFECLPE--R-DV----VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269 (634)
Q Consensus 197 ~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 269 (634)
+..+...+...|++++|...|++..+ + +. ..|..+...|...|++++|+..|++..+..-.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------------ 118 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKS------------ 118 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH------------
Confidence 33445556666666666666655432 1 22 24555566666666666666666655432000
Q ss_pred HhcccchHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---------CChhhHHHHHHHHHhc
Q 006705 270 LSGLAALGHGKQVHSHVLRFE-IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---------RTVISWNAMLVGYSKH 339 (634)
Q Consensus 270 ~~~~~~~~~a~~i~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---------~~~~~~~~li~~~~~~ 339 (634)
.+ .+....++..+...|...|++++|...|++..+ ....+|..+...|...
T Consensus 119 -------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 119 -------------------MNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp -------------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred -------------------ccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc
Confidence 00 011223334444444444555444444443321 0123455555556666
Q ss_pred CC-----------------hHHHHHHHHHHHHcC---CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCC
Q 006705 340 GM-----------------GREVVELFNLMREEN---KVKPD-SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398 (634)
Q Consensus 340 g~-----------------~~~A~~~~~~m~~~~---g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~ 398 (634)
|+ +++|++.+++..+.. +..|. ..++..+...+...|++++|...++...+.. .-.++
T Consensus 180 g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~ 258 (411)
T 4a1s_A 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA-REFGD 258 (411)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTC
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-HhcCC
Confidence 66 666666655543310 11111 2355566666777777777777777666431 00111
Q ss_pred ----hHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC--
Q 006705 399 ----IEHYGCVVDMLGRAGRVGEALEFIKNM----PFEPT----AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN-- 464 (634)
Q Consensus 399 ----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-- 464 (634)
...+..+...|...|++++|.+.+++. +...+ ..++..+...+...|++++|...+++++++.+..
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 235667777777777777777777654 10111 3456666777777888888877777777654332
Q ss_pred ----CchHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 465 ----AGNYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 465 ----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
...+..++.+|...|++++|.+.+++..+
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34777899999999999999999988864
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.34 E-value=6.7e-11 Score=106.80 Aligned_cols=165 Identities=12% Similarity=0.015 Sum_probs=120.9
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHH
Q 006705 325 TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404 (634)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 404 (634)
+...|..+...|.+.|++++|++.|++..+. -+-+..++..+..++...|++++|...+...... .+.+...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHH
Confidence 4456677777777777777777777777665 2234466677777777777777777777777653 2334566666
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcH
Q 006705 405 VVDMLGRAGRVGEALEFIKNM-P-FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482 (634)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 482 (634)
+...+...+++++|.+.+.+. . .+.+...|..+...+...|++++|...++++++++|.++.+|..++.+|.+.|+++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 777777778888877777765 1 23456677777788888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhhC
Q 006705 483 DVTRVRELMKEK 494 (634)
Q Consensus 483 ~A~~~~~~m~~~ 494 (634)
+|.+.+++..+.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 888888887654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.3e-11 Score=124.79 Aligned_cols=196 Identities=11% Similarity=-0.000 Sum_probs=125.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHhcCC--------------------hHHHHH
Q 006705 297 LQNSLIDMYSKCGSLTYSRRVFDNMSE-----RT----VISWNAMLVGYSKHGM--------------------GREVVE 347 (634)
Q Consensus 297 ~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~ 347 (634)
++..+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|++
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 444455555555555555555554432 11 2355666666666666 677777
Q ss_pred HHHHHHHc---CCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCC----hHHHHHHHHHHHHcCCHHHHH
Q 006705 348 LFNLMREE---NKVKPD-SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE----IEHYGCVVDMLGRAGRVGEAL 419 (634)
Q Consensus 348 ~~~~m~~~---~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~ 419 (634)
.+++.... .+..|. ..++..+...+...|++++|...++...+.. .-.++ ...+..+...|...|++++|.
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA-KEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-HhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 66654431 011121 2456666777777888888888887776532 11111 336777788888888888888
Q ss_pred HHHHhC----CCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC------CchHHHHHHHHhhcCCcHHHH
Q 006705 420 EFIKNM----PFEPT----AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN------AGNYVILSNLYASAGRWEDVT 485 (634)
Q Consensus 420 ~~~~~m----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~ 485 (634)
..+++. +..++ ..++..+...+...|++++|...++++.++.+.. ...+..++.+|...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 887765 11112 4466677788888888888888888877664432 446778889999999999999
Q ss_pred HHHHHHhh
Q 006705 486 RVRELMKE 493 (634)
Q Consensus 486 ~~~~~m~~ 493 (634)
+.+++..+
T Consensus 328 ~~~~~al~ 335 (406)
T 3sf4_A 328 HFAEKHLE 335 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888754
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.8e-11 Score=119.37 Aligned_cols=198 Identities=12% Similarity=-0.000 Sum_probs=131.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHhcCC--------------------hHHHH
Q 006705 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSE-----RT----VISWNAMLVGYSKHGM--------------------GREVV 346 (634)
Q Consensus 296 ~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~ 346 (634)
.++..+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|+
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 3445555556666666666665555431 11 2356666666777777 77777
Q ss_pred HHHHHHHHcC---CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccC----ChHHHHHHHHHHHHcCCHHHH
Q 006705 347 ELFNLMREEN---KVKPD-SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP----EIEHYGCVVDMLGRAGRVGEA 418 (634)
Q Consensus 347 ~~~~~m~~~~---g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A 418 (634)
+.+++..... +..|. ..++..+...+...|++++|...++...+.. .-.+ ....+..+...|.+.|++++|
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA-KEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 7776654310 11111 2456666777788888888888888776432 1111 133677788888888888888
Q ss_pred HHHHHhC----CCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC------CchHHHHHHHHhhcCCcHHH
Q 006705 419 LEFIKNM----PFEPT----AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN------AGNYVILSNLYASAGRWEDV 484 (634)
Q Consensus 419 ~~~~~~m----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A 484 (634)
...+++. +..++ ..++..+...+...|++++|...++++.++.|.. ...+..++.+|.+.|++++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 8888765 11122 4466777788888899999988888887764432 33677899999999999999
Q ss_pred HHHHHHHhhC
Q 006705 485 TRVRELMKEK 494 (634)
Q Consensus 485 ~~~~~~m~~~ 494 (634)
.+.+++..+.
T Consensus 323 ~~~~~~a~~~ 332 (338)
T 3ro2_A 323 MHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999988654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.6e-11 Score=123.04 Aligned_cols=99 Identities=9% Similarity=-0.041 Sum_probs=51.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhccCCc---cCChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HH
Q 006705 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF---EPEIEHYGCVVDMLGRAGRVGEALEFIKNM----PFEPT----AA 432 (634)
Q Consensus 364 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~ 432 (634)
++..+...+...|++++|...++...+..+.. ......+..+...|.+.|++++|.+.+++. +..++ ..
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 344 (411)
T 4a1s_A 265 ANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEAR 344 (411)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHH
Confidence 44445555555555555555555544321000 011345555666666666666666665554 00011 23
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhccCC
Q 006705 433 ILGSLLGACRVHYNVDIGEFVGQRLMEIEP 462 (634)
Q Consensus 433 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 462 (634)
++..+...+...|++++|...++++.++.+
T Consensus 345 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 345 ACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 455555666666777777777666666554
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=9.4e-11 Score=120.21 Aligned_cols=118 Identities=14% Similarity=0.009 Sum_probs=57.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhccC--Cc-cCChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HH
Q 006705 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKD--GF-EPEIEHYGCVVDMLGRAGRVGEALEFIKNM----PFEPT----AA 432 (634)
Q Consensus 364 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~ 432 (634)
++..+...+...|++++|...++...+..+ +. .....++..+...|.+.|++++|.+.+++. +..++ ..
T Consensus 229 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 308 (406)
T 3sf4_A 229 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGR 308 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 344444445555555555555554443210 00 001344555555555555555555555543 00111 33
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhccCCC------CCchHHHHHHHHhhcCCc
Q 006705 433 ILGSLLGACRVHYNVDIGEFVGQRLMEIEPE------NAGNYVILSNLYASAGRW 481 (634)
Q Consensus 433 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~ 481 (634)
++..+...+...|++++|...++++.++.+. ...++..++.+|...|+.
T Consensus 309 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 309 ACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 4455556666666666666666665544221 234556677777666654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.31 E-value=6.9e-09 Score=112.00 Aligned_cols=417 Identities=9% Similarity=0.006 Sum_probs=286.9
Q ss_pred chHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC--C-CcchHHHHHHHHHhCCC---hhHHHHHH
Q 006705 74 LRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE--R-NVVSWTAMISAYSQKAH---SFEALNLF 147 (634)
Q Consensus 74 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~---~~~A~~~~ 147 (634)
...-...++..+..+ +.|...|..++..+.+.+.++.|+.+|+.+.. | +...|...+..-.+.|. ++.+..+|
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 344455566666665 57899999999999999999999999998876 3 55678888888888898 99999999
Q ss_pred HHHHHCC-CCCChhhHHHHHHHHhccCCc--------HHHHHHHHHHHH-hCC-CCc-hHHHHHHHHHHH---------h
Q 006705 148 IRMLRSD-TEPNEFTFATVLTSCAGAFGF--------ELGKQIHSLIIK-SNF-ESH-IYVGSSLLDMYA---------K 206 (634)
Q Consensus 148 ~~m~~~g-~~p~~~t~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~li~~y~---------~ 206 (634)
++.+... ..|+...|..-+.-....++. +...++|+.++. .|. .++ ..+|...+.... .
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9998763 247877777766655554443 334577877665 365 454 467877776543 2
Q ss_pred cCCHHHHHHHHccCCC-C--Ch-hhHH---HHHHHHH----------hcCChHHHHHHHHHHhhc--CCc----------
Q 006705 207 AGRIHEARGVFECLPE-R--DV-VSCT---AIISGYA----------QLGLDEEAIELFRKLQVE--GMI---------- 257 (634)
Q Consensus 207 ~g~~~~A~~~~~~m~~-~--~~-~~~~---~li~~~~----------~~g~~~~A~~~~~~m~~~--g~~---------- 257 (634)
.++++.+.++|+.... | +. ..|. .+...+. ....++.|...+.++... ++.
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~ 286 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQA 286 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTC
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccc
Confidence 4467889999988764 2 11 2332 2222110 011234445555543221 111
Q ss_pred -----c--C---h---hhHHHHHHHHhccc-------chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH-H
Q 006705 258 -----S--N---Y---VTYASVLTALSGLA-------ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR-R 316 (634)
Q Consensus 258 -----p--~---~---~t~~~ll~~~~~~~-------~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~ 316 (634)
| + . ..|...+.---..+ ..+....+|++++.. ++.+..+|-..+..+...|+.++|. +
T Consensus 287 ~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 287 TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 1 0 0 11222222111111 123345678877776 3567888888888888999999996 9
Q ss_pred HHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---------CCCC------------HHHHHHHHHHH
Q 006705 317 VFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENK---------VKPD------------SVTYLAVLSGC 372 (634)
Q Consensus 317 ~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g---------~~pd------------~~t~~~ll~a~ 372 (634)
+|++... ++...|-..+...-+.|++++|.++|+++... . -.|+ ...|...+...
T Consensus 366 il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~-l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e 444 (679)
T 4e6h_A 366 YLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDR-IHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM 444 (679)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH
Confidence 9988763 35667888888899999999999999998763 1 0142 23577777777
Q ss_pred hccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcC-CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchH
Q 006705 373 SHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAG-RVGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDI 449 (634)
Q Consensus 373 ~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~ 449 (634)
.+.|.++.|..+|..+.+. .-.+....|...+.+-.+.+ +.+.|.++|+.. ..+.+...|...+......|+.+.
T Consensus 445 rR~~~l~~AR~vf~~A~~~--~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~ 522 (679)
T 4e6h_A 445 KRIQGLAASRKIFGKCRRL--KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQ 522 (679)
T ss_dssp HHHHCHHHHHHHHHHHHHT--GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHH
Confidence 7889999999999999864 12234455655555555555 489999999876 233467778888888888999999
Q ss_pred HHHHHHHHhccCCC---CCchHHHHHHHHhhcCCcHHHHHHHHHHhhCC
Q 006705 450 GEFVGQRLMEIEPE---NAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495 (634)
Q Consensus 450 a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 495 (634)
|..+++++....|+ ....|...+..-.+.|..+.+.++.+++.+.-
T Consensus 523 AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 523 VKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999998873 34567788888889999999999999998763
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-11 Score=129.94 Aligned_cols=209 Identities=8% Similarity=-0.078 Sum_probs=170.9
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH-HHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHH
Q 006705 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSL-TYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNL 351 (634)
Q Consensus 276 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 351 (634)
++.+.+.+....+.. +.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|.+.|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444443332 34667777777888888888 888888887652 3577889999999999999999999999
Q ss_pred HHHcCCCCCCHHHHHHHHHHHhcc---------CcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHc--------CC
Q 006705 352 MREENKVKPDSVTYLAVLSGCSHG---------GMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA--------GR 414 (634)
Q Consensus 352 m~~~~g~~pd~~t~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~ 414 (634)
..+. .|+...+..+...+... |++++|...|++..+.. +.+...|..+..+|... |+
T Consensus 163 al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 163 ALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD---VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 8865 57788888888889998 99999999999998642 34578899999999998 99
Q ss_pred HHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHH
Q 006705 415 VGEALEFIKNM-PFEP----TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRE 489 (634)
Q Consensus 415 ~~~A~~~~~~m-~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 489 (634)
+++|++.|++. ...| +...|..+..++...|++++|...++++++++|+++..+..+..++...|++++|.+.+.
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999986 3344 788899999999999999999999999999999999999999999999999999987554
Q ss_pred HH
Q 006705 490 LM 491 (634)
Q Consensus 490 ~m 491 (634)
.+
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 33
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.30 E-value=5.5e-11 Score=118.18 Aligned_cols=58 Identities=3% Similarity=0.018 Sum_probs=31.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-----hhhHHHHHHHHhccCCcHHHHHHHHHHH
Q 006705 127 WTAMISAYSQKAHSFEALNLFIRMLRSDTEPN-----EFTFATVLTSCAGAFGFELGKQIHSLII 186 (634)
Q Consensus 127 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 186 (634)
+......+...|++++|+..|++..... |+ ...+..+...+...|+++.|...+..++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 70 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL 70 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344455666666666666666665532 22 1334444555555555555555555543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.29 E-value=6e-10 Score=109.80 Aligned_cols=218 Identities=8% Similarity=0.004 Sum_probs=152.4
Q ss_pred HHHHHHHHHHhhcCCccChhhHHHHHHHHh-------cccch-------HHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 006705 242 EEAIELFRKLQVEGMISNYVTYASVLTALS-------GLAAL-------GHGKQVHSHVLRFEIPSYVVLQNSLIDMYSK 307 (634)
Q Consensus 242 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~ 307 (634)
++|+.+|++..... +-+...|......+. ..|++ ++|..+++..++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56667777776542 223344555544443 24664 7788888877773224456678888888888
Q ss_pred cCCHHHHHHHHhhcCC--C-Chh-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH-hccCcHHHHH
Q 006705 308 CGSLTYSRRVFDNMSE--R-TVI-SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC-SHGGMEDRGL 382 (634)
Q Consensus 308 ~g~~~~A~~~f~~m~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~-~~~g~~~~a~ 382 (634)
.|++++|..+|++..+ | +.. .|..++..+.+.|++++|..+|++..+. .+++...|....... ...|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888887664 3 333 7888888888888888888888888765 223344444333332 2368888888
Q ss_pred HHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCCchHHHHHHHH
Q 006705 383 AVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-P---FEP--TAAILGSLLGACRVHYNVDIGEFVGQR 456 (634)
Q Consensus 383 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~ 456 (634)
.+|+...+.. +.+...|..++..+.+.|++++|..+|++. . ..| ....|..++......|+.+.|..++++
T Consensus 190 ~~~~~al~~~---p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 190 KIFELGLKKY---GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHH---TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHhC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888887642 336778888888888888888888888876 1 244 456788888888888888888888888
Q ss_pred HhccCCCCC
Q 006705 457 LMEIEPENA 465 (634)
Q Consensus 457 ~~~~~p~~~ 465 (634)
+.+..|++.
T Consensus 267 a~~~~p~~~ 275 (308)
T 2ond_A 267 RFTAFREEY 275 (308)
T ss_dssp HHHHTTTTT
T ss_pred HHHHccccc
Confidence 888888754
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.27 E-value=7.4e-11 Score=106.51 Aligned_cols=168 Identities=11% Similarity=0.024 Sum_probs=138.4
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 006705 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369 (634)
Q Consensus 293 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll 369 (634)
.+..+|..|...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|+..+.+.... .+.+...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 3567788888889999999999999988753 46778888999999999999999999988876 334556677777
Q ss_pred HHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCc
Q 006705 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNV 447 (634)
Q Consensus 370 ~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~ 447 (634)
..+...++++.+...+....+. .+.+...+..+...|.+.|++++|++.|++. .. +.+..+|..+..++...|++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH
Confidence 7888899999999999988864 2446788889999999999999999999886 22 34677889999999999999
Q ss_pred hHHHHHHHHHhccCCCCC
Q 006705 448 DIGEFVGQRLMEIEPENA 465 (634)
Q Consensus 448 ~~a~~~~~~~~~~~p~~~ 465 (634)
++|...++++++++|+++
T Consensus 158 ~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 158 DEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHhCCccCH
Confidence 999999999999998753
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=4.5e-11 Score=117.67 Aligned_cols=237 Identities=13% Similarity=0.085 Sum_probs=118.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHhhc-------CCccChhhHHHHHHHHhcccchHHHHHHHHHHHHc------C-C
Q 006705 226 VSCTAIISGYAQLGLDEEAIELFRKLQVE-------GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF------E-I 291 (634)
Q Consensus 226 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~------~-~ 291 (634)
.+|..+...|...|++++|+.+|+++.+. ..+.....+..+...+...|++++|...+..+++. + .
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45666666677777777777777666542 11222334444555555555555555555554432 1 1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-----CCCC-CHHHH
Q 006705 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN-----KVKP-DSVTY 365 (634)
Q Consensus 292 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----g~~p-d~~t~ 365 (634)
+....++..+...|...|++++|...|+ +..+.. +..| ....+
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~-------------------------------~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCK-------------------------------RALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHH-------------------------------HHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHH-------------------------------HHHHHHHHhcCCCChHHHHHH
Confidence 1223344445555555555555555544 333210 0111 12344
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhhccC-----CccCChHHHHHHHHHHHHcCCHHHHHHHHHhCC----------CCCC
Q 006705 366 LAVLSGCSHGGMEDRGLAVFHEIVDCKD-----GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP----------FEPT 430 (634)
Q Consensus 366 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~-----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------~~p~ 430 (634)
..+...+...|++++|..+++.+.+... ..+.....+..+...|.+.|++++|.+.++++- ..+.
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 4555555566666666665555543200 011123455556666666666666666665541 0011
Q ss_pred -------HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 431 -------AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 431 -------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
...+..+...+...+.+..+...++......|..+.++..++.+|.+.|++++|.+.+++..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 111122223334445555566666666667777778888999999999999999999988754
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-09 Score=111.33 Aligned_cols=233 Identities=6% Similarity=-0.038 Sum_probs=127.2
Q ss_pred HHHHHHhcCCHHHHHHHHccCCC-----C----ChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHH
Q 006705 200 LLDMYAKAGRIHEARGVFECLPE-----R----DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL 270 (634)
Q Consensus 200 li~~y~~~g~~~~A~~~~~~m~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 270 (634)
....+...|++++|...|++... + ...+|..+...|...|++++|+..+.+..+.-...+..
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------- 179 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY--------- 179 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT---------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc---------
Confidence 44556667777777777765432 1 12456666777777777777777776655421000000
Q ss_pred hcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHhcCC
Q 006705 271 SGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE-----RT----VISWNAMLVGYSKHGM 341 (634)
Q Consensus 271 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~ 341 (634)
.+....+++.+...|...|++++|...|++..+ ++ ..++..+...|...|+
T Consensus 180 --------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 239 (383)
T 3ulq_A 180 --------------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ 239 (383)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred --------------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC
Confidence 000112333444444444444444444443321 11 1245556666666666
Q ss_pred hHHHHHHHHHHHHc---CCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccC--CccCChHHHHHHHHHHHHcCC-
Q 006705 342 GREVVELFNLMREE---NKVKP-DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD--GFEPEIEHYGCVVDMLGRAGR- 414 (634)
Q Consensus 342 ~~~A~~~~~~m~~~---~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~- 414 (634)
+++|++.|++..+. .+..| ...++..+...+...|++++|...++...+... +-+.....+..+...|...|+
T Consensus 240 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 319 (383)
T 3ulq_A 240 YEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDE 319 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCH
T ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH
Confidence 66666666655541 01212 235566666677777777777777766654310 011112234556666777777
Q ss_pred --HHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCchHHHHHHHHHhccC
Q 006705 415 --VGEALEFIKNMPFEPTA-AILGSLLGACRVHYNVDIGEFVGQRLMEIE 461 (634)
Q Consensus 415 --~~~A~~~~~~m~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 461 (634)
+++|+.++++....|+. ..+..+...|...|+++.|...++++.++.
T Consensus 320 ~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 320 EAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 77777777777543332 245556677777777777777777776543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.19 E-value=4.6e-10 Score=100.87 Aligned_cols=157 Identities=13% Similarity=0.010 Sum_probs=80.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHH
Q 006705 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411 (634)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 411 (634)
+...+...|++++|++.|+++.+. .+.+..++..+...+...|++++|...++.+.+. .+.+...+..+...|..
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 14 KGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD---APDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHH
Confidence 333344444444444444444322 1123333444444444444444444444444432 12234444444555555
Q ss_pred cCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHH
Q 006705 412 AGRVGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRE 489 (634)
Q Consensus 412 ~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 489 (634)
.|++++|.+.++++ ..+.+...|..+...+...|++++|...++++.+..|.++..+..++.+|...|++++|.+.++
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555443 1123444555555556666666666666666666666666667777777777777777777777
Q ss_pred HHhh
Q 006705 490 LMKE 493 (634)
Q Consensus 490 ~m~~ 493 (634)
...+
T Consensus 169 ~~~~ 172 (186)
T 3as5_A 169 KANE 172 (186)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.19 E-value=3e-09 Score=104.79 Aligned_cols=84 Identities=13% Similarity=0.007 Sum_probs=45.1
Q ss_pred cCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHhccCcHHHHH
Q 006705 308 CGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD--SVTYLAVLSGCSHGGMEDRGL 382 (634)
Q Consensus 308 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~ 382 (634)
.|++++|.++|++..+ .+...|..++..+.+.|++++|..+|++......+.|+ ...|..++......|+.+.|.
T Consensus 182 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~ 261 (308)
T 2ond_A 182 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 261 (308)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3555555555555432 24455555555566666666666666666553112332 344555555555566666666
Q ss_pred HHHHHhhhc
Q 006705 383 AVFHEIVDC 391 (634)
Q Consensus 383 ~~~~~~~~~ 391 (634)
.+++.+.+.
T Consensus 262 ~~~~~a~~~ 270 (308)
T 2ond_A 262 KVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.18 E-value=6.1e-10 Score=113.54 Aligned_cols=285 Identities=10% Similarity=-0.002 Sum_probs=146.2
Q ss_pred HhccCCchHHHHHHHHHHHhC--CCCC--hhHHHHHHHHHH--cCCChHHHH-----------HHHhhcCC-C-Ccch--
Q 006705 68 CVNQRTLRGGQRVHAHMIKTC--YRPP--VYLRTRLIVFYN--KCECLSDAR-----------KMFDEMRE-R-NVVS-- 126 (634)
Q Consensus 68 ~~~~~~~~~a~~~~~~~~~~g--~~~~--~~~~~~li~~y~--~~g~~~~A~-----------~~~~~~~~-~-~~~~-- 126 (634)
+.+.++++.|..+.+.+.+.- +..| ...|-.++..-. -.+.++.+. +.++.+.. + +...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 346788999999998887642 2233 233333332211 112233333 44444422 1 1111
Q ss_pred ----HHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCC----hhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCC------
Q 006705 127 ----WTAMISAYSQKAHSFEALNLFIRMLRSD-TEPN----EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE------ 191 (634)
Q Consensus 127 ----~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~------ 191 (634)
|......+...|++++|+..|++....- -.|| ..++..+...+...|+++.|...+..+++.--.
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 1124455667788888888888876531 0122 245666666777777777777777776654211
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHccCCC-----CC----hhhHHHHHHHHHhcCChHHHHHHHHHHhhc----CC-c
Q 006705 192 SHIYVGSSLLDMYAKAGRIHEARGVFECLPE-----RD----VVSCTAIISGYAQLGLDEEAIELFRKLQVE----GM-I 257 (634)
Q Consensus 192 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~ 257 (634)
....+++.+...|...|++++|.+.|++..+ ++ ..+|+.+...|...|++++|+..|++..+. +. +
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 1134566666777777777777766655432 11 125666666666777777777666666541 22 2
Q ss_pred cChhhHHHHHHHHhcccchHHHHHHHHHHHHc----CCCCchhHHHHHHHHHHhcCC---HHHHHHHHhhcCCC--Chhh
Q 006705 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRF----EIPSYVVLQNSLIDMYSKCGS---LTYSRRVFDNMSER--TVIS 328 (634)
Q Consensus 258 p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~----~~~~~~~~~~~li~~~~~~g~---~~~A~~~f~~m~~~--~~~~ 328 (634)
....++..+...+...|++++|...+....+. +-+.....++.+...|...|+ +++|..++++.... ....
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 341 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDF 341 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHH
Confidence 22334555555555666666666655554432 111112223334444444444 44444444444221 1123
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 006705 329 WNAMLVGYSKHGMGREVVELFNLM 352 (634)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~m 352 (634)
+..+...|...|++++|.+.|++.
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKV 365 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 334444444444444444444443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=4.8e-10 Score=122.52 Aligned_cols=160 Identities=17% Similarity=0.175 Sum_probs=104.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccC-ChHHHH
Q 006705 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD-SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP-EIEHYG 403 (634)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~ 403 (634)
..+|+.|...|.+.|++++|++.|++..+. .|+ ..++..+..++.+.|++++|...|++..+. .| +...|.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l---~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l----~P~~~~a~~ 81 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV---FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI----SPTFADAYS 81 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHH
Confidence 345666666666666666666666666654 233 456666666666666666666666666643 23 356666
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCc
Q 006705 404 CVVDMLGRAGRVGEALEFIKNM-PFEP-TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW 481 (634)
Q Consensus 404 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 481 (634)
.+..+|.+.|++++|++.|++. ...| +...|..+..++...|++++|...++++++++|+++..|..|+.+|...|+|
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 6666777777777777666664 2222 4556666777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHh
Q 006705 482 EDVTRVRELMK 492 (634)
Q Consensus 482 ~~A~~~~~~m~ 492 (634)
++|.+.+++..
T Consensus 162 ~~A~~~~~kal 172 (723)
T 4gyw_A 162 TDYDERMKKLV 172 (723)
T ss_dssp TTHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77776666553
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.15 E-value=1.9e-09 Score=96.79 Aligned_cols=168 Identities=10% Similarity=-0.022 Sum_probs=142.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 006705 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG 371 (634)
Q Consensus 295 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a 371 (634)
...+..+...|...|++++|...|+++.+ .+...|..+...+...|++++|.+.++++.+. .+.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence 34566778888999999999999999875 36778888999999999999999999999876 34567788888889
Q ss_pred HhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchH
Q 006705 372 CSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDI 449 (634)
Q Consensus 372 ~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~ 449 (634)
+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ..+.+...|..+...+...|++++
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEA---NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHhc---CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999864 2456788999999999999999999999886 223467788899999999999999
Q ss_pred HHHHHHHHhccCCCCCch
Q 006705 450 GEFVGQRLMEIEPENAGN 467 (634)
Q Consensus 450 a~~~~~~~~~~~p~~~~~ 467 (634)
|...++++.+..|++...
T Consensus 163 A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 163 ALPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHHHcCCCchhh
Confidence 999999999998886543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.8e-10 Score=113.33 Aligned_cols=163 Identities=11% Similarity=0.050 Sum_probs=77.0
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHC-------CCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHh------CC-C
Q 006705 126 SWTAMISAYSQKAHSFEALNLFIRMLRS-------DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKS------NF-E 191 (634)
Q Consensus 126 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------g~-~ 191 (634)
+|..+...|...|++++|+.+|+++... .......++..+...+...|++++|...+..+++. +- +
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 4455555555555555555555555431 11112233444444455555555555555554433 11 1
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHccCCC-----------CChhhHHHHHHHHHhcCChHHHHHHHHHHhhc------
Q 006705 192 SHIYVGSSLLDMYAKAGRIHEARGVFECLPE-----------RDVVSCTAIISGYAQLGLDEEAIELFRKLQVE------ 254 (634)
Q Consensus 192 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------ 254 (634)
....++..+...|...|++++|.+.|++..+ .....|..+...|...|++++|++.|++....
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 1234445555555555555555555544321 01234555555556666666666666555442
Q ss_pred CCccC-hhhHHHHHHHHhcccchHHHHHHHHHHHH
Q 006705 255 GMISN-YVTYASVLTALSGLAALGHGKQVHSHVLR 288 (634)
Q Consensus 255 g~~p~-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 288 (634)
+..|+ ..++..+...+...|++++|...+..+.+
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11111 22344444555555555555555555443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.4e-09 Score=113.91 Aligned_cols=211 Identities=10% Similarity=-0.073 Sum_probs=122.7
Q ss_pred hhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCc-HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHc
Q 006705 140 SFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGF-ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218 (634)
Q Consensus 140 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 218 (634)
+++++..+++.... .+.+...+..+...+...|++ ++|...+..+++.. +.+...+..+...|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34555555554432 122445555556666666666 66666666666553 3334555555555555555555555555
Q ss_pred cCCC--CChhhHHHHHHHHHhc---------CChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHH
Q 006705 219 CLPE--RDVVSCTAIISGYAQL---------GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287 (634)
Q Consensus 219 ~m~~--~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~ 287 (634)
+..+ |+...|..+...|... |++++|+..|++. +
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~a-----------------------------------l 206 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLA-----------------------------------V 206 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHH-----------------------------------H
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHH-----------------------------------H
Confidence 4422 3334444444444444 4444444444444 4
Q ss_pred HcCCCCchhHHHHHHHHHHhc--------CCHHHHHHHHhhcCC------CChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006705 288 RFEIPSYVVLQNSLIDMYSKC--------GSLTYSRRVFDNMSE------RTVISWNAMLVGYSKHGMGREVVELFNLMR 353 (634)
Q Consensus 288 ~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 353 (634)
+.. +.+...+..+...|... |++++|...|++..+ .+...|..+...|...|++++|++.|++..
T Consensus 207 ~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 285 (474)
T 4abn_A 207 QMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAA 285 (474)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 433 23344455555555555 566666666665542 255677777777888888888888888877
Q ss_pred HcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 006705 354 EENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390 (634)
Q Consensus 354 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 390 (634)
+. -+-+...+..+..++...|++++|.+.+..+..
T Consensus 286 ~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~~~ 320 (474)
T 4abn_A 286 AL--DPAWPEPQQREQQLLEFLSRLTSLLESKGKTKP 320 (474)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHTTTCCH
T ss_pred Hh--CCCCHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 65 233445677777777788888888877777654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.11 E-value=2.7e-08 Score=100.77 Aligned_cols=194 Identities=13% Similarity=0.007 Sum_probs=108.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCC----------C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--C--CHH
Q 006705 299 NSLIDMYSKCGSLTYSRRVFDNMSE----------R-TVISWNAMLVGYSKHGMGREVVELFNLMREENKVK--P--DSV 363 (634)
Q Consensus 299 ~~li~~~~~~g~~~~A~~~f~~m~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~--p--d~~ 363 (634)
+.+...|...|++++|...+++... + ....+..+...+...|++++|...+++.... ... | ...
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~ 175 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV-LSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTSCGGGGHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-hhccCcHHHHH
Confidence 3444455555555555555544321 1 1123444555666667777777776665543 111 1 123
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHH----HHHHHHHHcCCHHHHHHHHHhCC-CCCC-----HHH
Q 006705 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYG----CVVDMLGRAGRVGEALEFIKNMP-FEPT-----AAI 433 (634)
Q Consensus 364 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~----~li~~~~~~g~~~~A~~~~~~m~-~~p~-----~~~ 433 (634)
++..+...+...|++++|...++................. ..+..+...|++++|...+++.. ..|. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 4555556666677777777777766542101111111111 22334567777777777777651 1111 224
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhccCCCC------CchHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 434 LGSLLGACRVHYNVDIGEFVGQRLMEIEPEN------AGNYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 434 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
+..+...+...|++++|...++++....+.. ...+..+..+|...|+.++|.+.++....
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4556666777777777777776665543221 13566778888889999999988888754
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.10 E-value=3.7e-09 Score=107.47 Aligned_cols=222 Identities=8% Similarity=0.000 Sum_probs=128.4
Q ss_pred hcccchHHHHHHHHHHHHcC--CC---CchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----C-----ChhhHHHHHHH
Q 006705 271 SGLAALGHGKQVHSHVLRFE--IP---SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE-----R-----TVISWNAMLVG 335 (634)
Q Consensus 271 ~~~~~~~~a~~i~~~~~~~~--~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~-----~~~~~~~li~~ 335 (634)
...|++++|...+..+.+.. .+ ....++..+...|...|+++.|...+++..+ + ...+++.+...
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 44555555555555544321 01 1233455566666666666666555554331 1 13356667777
Q ss_pred HHhcCChHHHHHHHHHHHHcC---CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccC--CccCChHHHHHHHHHH
Q 006705 336 YSKHGMGREVVELFNLMREEN---KVKP-DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD--GFEPEIEHYGCVVDML 409 (634)
Q Consensus 336 ~~~~g~~~~A~~~~~~m~~~~---g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~~p~~~~~~~li~~~ 409 (634)
|...|++++|++.|++..+.. +..+ ...++..+...+...|++++|...++...+... +.+....++..+...|
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 271 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTL 271 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Confidence 777777777777776655420 1111 124566666777777888888877777765100 1122256677777778
Q ss_pred HHcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---chHHHHHHHHHhccCCCCCchHHHHHHHHhhcC
Q 006705 410 GRAGRVGEALEFIKNM----PF--EPT-AAILGSLLGACRVHYN---VDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479 (634)
Q Consensus 410 ~~~g~~~~A~~~~~~m----~~--~p~-~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 479 (634)
.+.|++++|...+++. +. .|. ...+..+...+...++ ++.|...+++. ...|.....+..++..|...|
T Consensus 272 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g 350 (378)
T 3q15_A 272 CKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSC 350 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCC
Confidence 8888888888877764 11 122 2234444455555566 55555555542 122223356678889999999
Q ss_pred CcHHHHHHHHHHhh
Q 006705 480 RWEDVTRVRELMKE 493 (634)
Q Consensus 480 ~~~~A~~~~~~m~~ 493 (634)
++++|.+.+++..+
T Consensus 351 ~~~~A~~~~~~al~ 364 (378)
T 3q15_A 351 HFEQAAAFYRKVLK 364 (378)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999998887743
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.09 E-value=5.2e-08 Score=98.62 Aligned_cols=258 Identities=8% Similarity=-0.075 Sum_probs=136.5
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChh----hHHHHHHHHhccCCcHHHHHHHHHHHHhCCC-Cc----hHHHHHHHH
Q 006705 132 SAYSQKAHSFEALNLFIRMLRSDTEPNEF----TFATVLTSCAGAFGFELGKQIHSLIIKSNFE-SH----IYVGSSLLD 202 (634)
Q Consensus 132 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~li~ 202 (634)
..+...|++++|...+++........+.. ++..+...+...|+++.|...+....+..-. .+ ..+++.+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34455666777776666665542111111 2333444555666666666666665543111 11 123455666
Q ss_pred HHHhcCCHHHHHHHHccCCC-------C----ChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCc--c--ChhhHHHHH
Q 006705 203 MYAKAGRIHEARGVFECLPE-------R----DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI--S--NYVTYASVL 267 (634)
Q Consensus 203 ~y~~~g~~~~A~~~~~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ll 267 (634)
.|...|++++|...+++... + ....+..+...|...|++++|...+++....... + ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 66677777777666654321 1 1224455666667777777777777766543211 1 123445555
Q ss_pred HHHhcccchHHHHHHHHHHHHcCCCCc-hhHHH-----HHHHHHHhcCCHHHHHHHHhhcCCCCh-------hhHHHHHH
Q 006705 268 TALSGLAALGHGKQVHSHVLRFEIPSY-VVLQN-----SLIDMYSKCGSLTYSRRVFDNMSERTV-------ISWNAMLV 334 (634)
Q Consensus 268 ~~~~~~~~~~~a~~i~~~~~~~~~~~~-~~~~~-----~li~~~~~~g~~~~A~~~f~~m~~~~~-------~~~~~li~ 334 (634)
..+...|++++|...+....+..-.++ ...+. .++..+...|++++|...+++...++. ..+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 566666777777777666654311111 11111 233446677777777777776654321 13455666
Q ss_pred HHHhcCChHHHHHHHHHHHHc---CCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhh
Q 006705 335 GYSKHGMGREVVELFNLMREE---NKVKPDS-VTYLAVLSGCSHGGMEDRGLAVFHEIV 389 (634)
Q Consensus 335 ~~~~~g~~~~A~~~~~~m~~~---~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~ 389 (634)
.+...|++++|...+++.... .|..++. .++..+..++...|+.++|...++...
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 677777777777777665432 0111122 134444445556666666666665554
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.8e-09 Score=98.85 Aligned_cols=205 Identities=8% Similarity=-0.006 Sum_probs=144.7
Q ss_pred cChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHH
Q 006705 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLV 334 (634)
Q Consensus 258 p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~ 334 (634)
.|...+......+...|++++|...+..+++...+++...+..+...|.+.|++++|...|++..+ .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 345677777778888889999999998888877546666666688888888888888888887653 24567888888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCCH-------HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCC---hHHHHH
Q 006705 335 GYSKHGMGREVVELFNLMREENKVKPDS-------VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE---IEHYGC 404 (634)
Q Consensus 335 ~~~~~g~~~~A~~~~~~m~~~~g~~pd~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~---~~~~~~ 404 (634)
.|...|++++|++.|++..+. .+.+. ..|..+...+...|++++|...|+.+.+ +.|+ ...+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~~~ 158 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD----VTSKKWKTDALYS 158 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----SSCHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh----cCCCcccHHHHHH
Confidence 888888888888888888875 22233 3466666777888888888888888874 3454 567777
Q ss_pred HHHHHHHcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHH
Q 006705 405 VVDMLGRAGRV--GEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLY 475 (634)
Q Consensus 405 li~~~~~~g~~--~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 475 (634)
+...|...|+. ++|..+ . ..+...+.... ....+.+++|...++++.++.|+++.....+..+.
T Consensus 159 l~~~~~~~~~~~~~~a~~~----~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 159 LGVLFYNNGADVLRKATPL----A-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHHHGGG----T-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc----c-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 77777665543 222221 1 12333333333 23445678899999999999998876666655543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.04 E-value=4.8e-09 Score=98.13 Aligned_cols=189 Identities=10% Similarity=-0.011 Sum_probs=123.2
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-CHHHHHH
Q 006705 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE----RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP-DSVTYLA 367 (634)
Q Consensus 293 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-d~~t~~~ 367 (634)
.|+..+..+...|.+.|++++|...|++..+ ++...|..+...+...|++++|++.|++..+. .| +...+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK---NYNLANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh---CcchHHHHHH
Confidence 3456666777777777888888777776542 56666666777777778888888888777764 34 3456677
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhccCCccCCh-------HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---HHHHHH
Q 006705 368 VLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEI-------EHYGCVVDMLGRAGRVGEALEFIKNM-PFEPT---AAILGS 436 (634)
Q Consensus 368 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ 436 (634)
+..++...|++++|...++...+.. +.+. ..|..+...+.+.|++++|++.|++. ...|+ ...|..
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 158 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAV---PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHH
Confidence 7777777788888888777777532 2223 45666777777777777777777765 44454 345555
Q ss_pred HHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 437 LLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 437 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
+...+.. .+...++++..+.+.+...|..+. ....|.+++|...+++..+.
T Consensus 159 l~~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 159 LGVLFYN-----NGADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHH-----HHHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 5555543 344455666666665544443332 33445679999999988764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.02 E-value=4.3e-08 Score=99.57 Aligned_cols=121 Identities=7% Similarity=-0.013 Sum_probs=61.4
Q ss_pred HHHHHHhcCCHHHHHHHHccCCC-----CC----hhhHHHHHHHHHhcCChHHHHHHHHHHhhcCC-----cc-ChhhHH
Q 006705 200 LLDMYAKAGRIHEARGVFECLPE-----RD----VVSCTAIISGYAQLGLDEEAIELFRKLQVEGM-----IS-NYVTYA 264 (634)
Q Consensus 200 li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----~p-~~~t~~ 264 (634)
....+...|++++|...|++... +| ..++..+...|...|++++|+..+.+..+... .+ ...++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34455666777777777665432 12 23566666777777777777777766654210 11 122344
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHc----CCC-CchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 006705 265 SVLTALSGLAALGHGKQVHSHVLRF----EIP-SYVVLQNSLIDMYSKCGSLTYSRRVFDN 320 (634)
Q Consensus 265 ~ll~~~~~~~~~~~a~~i~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~f~~ 320 (634)
.+...+...|++++|...+...++. +.+ ....+++.+...|...|++++|...|++
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~ 247 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK 247 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4555555555555555555544432 100 0122334444444445555544444443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.97 E-value=2.5e-09 Score=103.32 Aligned_cols=198 Identities=13% Similarity=0.088 Sum_probs=112.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCC-----------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-----CCC
Q 006705 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSE-----------RTVISWNAMLVGYSKHGMGREVVELFNLMREEN-----KVK 359 (634)
Q Consensus 296 ~~~~~li~~~~~~g~~~~A~~~f~~m~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----g~~ 359 (634)
.++..+...|...|++++|...|++..+ ....+|..+...|...|++++|++.|++..... ...
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3444444455555555555554444321 123355566666666666666666666655420 011
Q ss_pred C-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccC-----CccCChHHHHHHHHHHHHcCCHHHHHHHHHhCC-------
Q 006705 360 P-DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-----GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP------- 426 (634)
Q Consensus 360 p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~------- 426 (634)
| ...++..+...+...|++++|..+++.+.+... ..+.....+..+...|.+.|++++|...+++.-
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 2 235666777777778888888887777765300 012235567777888888888888888877651
Q ss_pred ---CCC-CHHHHHHHHHHHHhcCCchHHH------HHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 427 ---FEP-TAAILGSLLGACRVHYNVDIGE------FVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 427 ---~~p-~~~~~~~ll~~~~~~~~~~~a~------~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
..+ ....|..+.......+....+. ..++......|.....+..++.+|...|++++|.+.+++..+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111 2223333333333333333222 222222223344456788899999999999999999998764
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=9.7e-09 Score=100.19 Aligned_cols=187 Identities=7% Similarity=-0.053 Sum_probs=120.2
Q ss_pred HHhcCCHHHHHHHHhhcCC-------C--ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCCC-HHHHHHHHHH
Q 006705 305 YSKCGSLTYSRRVFDNMSE-------R--TVISWNAMLVGYSKHGMGREVVELFNLMREEN---KVKPD-SVTYLAVLSG 371 (634)
Q Consensus 305 ~~~~g~~~~A~~~f~~m~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---g~~pd-~~t~~~ll~a 371 (634)
|...|++++|...|.+..+ + ...+|+.+...|.+.|++++|+..|++..+.. |-.+. ..++..+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455555555555544321 1 13466777777777777777777777665430 11111 2467777888
Q ss_pred Hhcc-CcHHHHHHHHHHhhhccCCccC---ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CH-----HHHHHHH
Q 006705 372 CSHG-GMEDRGLAVFHEIVDCKDGFEP---EIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEP---TA-----AILGSLL 438 (634)
Q Consensus 372 ~~~~-g~~~~a~~~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~-----~~~~~ll 438 (634)
|... |++++|...|++..+..++... ...++..+...|.+.|++++|+..|++. ...| .. ..|..+.
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 8885 9999999999888754211000 1456888899999999999999999876 2122 21 1566777
Q ss_pred HHHHhcCCchHHHHHHHHHhccCCCCCch-----HHHHHHHHh--hcCCcHHHHHHHHHH
Q 006705 439 GACRVHYNVDIGEFVGQRLMEIEPENAGN-----YVILSNLYA--SAGRWEDVTRVRELM 491 (634)
Q Consensus 439 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~m 491 (634)
.++...|+++.|...+++.++++|..... +..++..|. ..+++++|.+.++.+
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 88888999999999999999999875443 334566664 456788888877655
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.92 E-value=5.5e-08 Score=93.02 Aligned_cols=183 Identities=7% Similarity=-0.020 Sum_probs=109.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-C---hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC-HHHHH
Q 006705 294 YVVLQNSLIDMYSKCGSLTYSRRVFDNMSE--R-T---VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD-SVTYL 366 (634)
Q Consensus 294 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd-~~t~~ 366 (634)
+...+-.+...+.+.|++++|...|+++.+ | + ...|..+...|.+.|++++|+..|++..+...-.|+ ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 344455555566666666666666666553 2 2 345555666666666666666666666654111112 23344
Q ss_pred HHHHHHhc--------cCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 006705 367 AVLSGCSH--------GGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLL 438 (634)
Q Consensus 367 ~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll 438 (634)
.+..++.. .|++++|...|+.+.+.+ +.+......+.......+.+ ...+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 44555555 666666666666666432 11112221111111000000 01135567
Q ss_pred HHHHhcCCchHHHHHHHHHhccCCCCC---chHHHHHHHHhhc----------CCcHHHHHHHHHHhhC
Q 006705 439 GACRVHYNVDIGEFVGQRLMEIEPENA---GNYVILSNLYASA----------GRWEDVTRVRELMKEK 494 (634)
Q Consensus 439 ~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~ 494 (634)
..+...|+++.|...++++++..|+++ ..+..++.+|... |++++|.+.++.+.+.
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 888999999999999999999999843 4778889999877 8999999999998764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.3e-08 Score=111.12 Aligned_cols=164 Identities=10% Similarity=0.105 Sum_probs=126.8
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC-HHHHHHH
Q 006705 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD-SVTYLAV 368 (634)
Q Consensus 293 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd-~~t~~~l 368 (634)
.+...++.|...|.+.|++++|.+.|++..+ .+..+|+.+...|.+.|++++|++.|++..+. .|+ ...|..+
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nL 83 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 3466777888888888888888888887652 35678888888888888888888888888775 344 5778888
Q ss_pred HHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 006705 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEP-TAAILGSLLGACRVHYN 446 (634)
Q Consensus 369 l~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~ 446 (634)
..++...|++++|.+.|++..+.. +-+...|+.+..+|.+.|++++|++.|++. ...| +...|..+..++...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~---P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN---PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 888888888888888888887531 235778888888888888888888888876 3334 46678888888888888
Q ss_pred chHHHHHHHHHhccCC
Q 006705 447 VDIGEFVGQRLMEIEP 462 (634)
Q Consensus 447 ~~~a~~~~~~~~~~~p 462 (634)
+++|...++++.++.|
T Consensus 161 ~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 161 WTDYDERMKKLVSIVA 176 (723)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCh
Confidence 8888888887776543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.89 E-value=3.6e-08 Score=96.15 Aligned_cols=243 Identities=10% Similarity=-0.016 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhc--C-CHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 006705 177 LGKQIHSLIIKSNFESHIYVGSSLLDMYAKA--G-RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253 (634)
Q Consensus 177 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~--g-~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 253 (634)
+|.+++.+..+.- ++....+ .+ + +. + ++++|...|++. ...|...|++++|+..|.+...
T Consensus 3 ~a~~~~~~a~k~~-~~~~~~~-~~---~-~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~ 65 (292)
T 1qqe_A 3 DPVELLKRAEKKG-VPSSGFM-KL---F-SGSDSYKFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAAD 65 (292)
T ss_dssp CHHHHHHHHHHHS-SCCCTHH-HH---H-SCCSHHHHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHh-CcCCCcc-hh---c-CCCCCccHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHH
Confidence 4666777776652 3322222 12 2 33 2 488888876653 6678888999999998887754
Q ss_pred c----CCccC-hhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhh
Q 006705 254 E----GMISN-YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328 (634)
Q Consensus 254 ~----g~~p~-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~ 328 (634)
. |-+++ ..+|..+..++...|++++|...+...++. +.+.|+...+ ..+
T Consensus 66 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---------------~~~~g~~~~~-----------a~~ 119 (292)
T 1qqe_A 66 YQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI---------------FTHRGQFRRG-----------ANF 119 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HHHTTCHHHH-----------HHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------HHHcCCHHHH-----------HHH
Confidence 3 21222 345666666677777777777766665542 1112222211 124
Q ss_pred HHHHHHHHHhc-CChHHHHHHHHHHHHcC---CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCCh----
Q 006705 329 WNAMLVGYSKH-GMGREVVELFNLMREEN---KVKPD-SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEI---- 399 (634)
Q Consensus 329 ~~~li~~~~~~-g~~~~A~~~~~~m~~~~---g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~---- 399 (634)
|+.+...|... |++++|+..|++..+.. +..+. ..++..+...+...|++++|...|+...+..+. .+..
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~ 198 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG-NRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS-CTTTGGGH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-CCcccHHH
Confidence 55556666664 66666666666655420 00000 234556666666677777777777766653101 1111
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH------HHHHHHHHHH--hcCCchHHHHHHHHHhccCCC
Q 006705 400 -EHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTAA------ILGSLLGACR--VHYNVDIGEFVGQRLMEIEPE 463 (634)
Q Consensus 400 -~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~------~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~p~ 463 (634)
..|..+..+|...|++++|...+++. .+.|+.. .+..++.++. ..++++.|...++++..++|.
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHH
Confidence 14555666666777777777777665 3233321 2333444443 234455555555555555554
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.87 E-value=4.1e-08 Score=94.58 Aligned_cols=63 Identities=11% Similarity=0.104 Sum_probs=31.1
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHC------CCCC-ChhhHHHHHHHHhccCCcHHHHHHHHHHHH
Q 006705 125 VSWTAMISAYSQKAHSFEALNLFIRMLRS------DTEP-NEFTFATVLTSCAGAFGFELGKQIHSLIIK 187 (634)
Q Consensus 125 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 187 (634)
.+|..+...|...|++++|+..|++.... +-.| ...++..+...+...|++++|...+..+++
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 113 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 113 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34555556666666666666666555432 1111 123344444445555555555555554443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.85 E-value=2.8e-07 Score=88.45 Aligned_cols=159 Identities=9% Similarity=-0.038 Sum_probs=73.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccC-----ChHH
Q 006705 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKP-DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP-----EIEH 401 (634)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p-----~~~~ 401 (634)
++..+..++...|++++|++++++.... +..+ +...+..++..+.+.|+.+.|.+.++.|.+ ..| +..+
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~-~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~----~~~d~~~~~d~~ 176 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDN-DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN----AIEDTVSGDNEM 176 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTS-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcc-CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCccccccchHH
Confidence 3334444455555555555555544332 1111 223344444455555555555555555542 233 1233
Q ss_pred HHHHHHH--HHHcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhcc----------CCCCCc
Q 006705 402 YGCVVDM--LGRAG--RVGEALEFIKNM-PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEI----------EPENAG 466 (634)
Q Consensus 402 ~~~li~~--~~~~g--~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----------~p~~~~ 466 (634)
...|..+ ....| ++++|..+|+++ ...|+..+-..++.++...|++++|+..++.+.+. +|+++.
T Consensus 177 l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~ 256 (310)
T 3mv2_B 177 ILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPT 256 (310)
T ss_dssp HHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHH
Confidence 3333333 11222 555555555554 22233222223333555555555555555554443 355555
Q ss_pred hHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 467 NYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 467 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
++..++.+....|+ +|.+++.++.+
T Consensus 257 ~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 257 FLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 55555555555554 55666666654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.82 E-value=5.8e-08 Score=81.56 Aligned_cols=129 Identities=17% Similarity=0.205 Sum_probs=71.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHH
Q 006705 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407 (634)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~ 407 (634)
.|..+...+...|++++|+.+|+++.+. .+.+..++..+...+...|++++|..+++.+.+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---------------- 64 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---------------- 64 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH----------------
Confidence 3455555555555566666555555544 1223344444444555555555555555554432
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHH
Q 006705 408 MLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRV 487 (634)
Q Consensus 408 ~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 487 (634)
.+.+...|..+...+...|+++.|...++++.+..|.++..+..++.+|.+.|++++|.+.
T Consensus 65 -------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 125 (136)
T 2fo7_A 65 -------------------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEY 125 (136)
T ss_dssp -------------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred -------------------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHH
Confidence 1123344444555555555555555555555566666666666777777777777777777
Q ss_pred HHHHhh
Q 006705 488 RELMKE 493 (634)
Q Consensus 488 ~~~m~~ 493 (634)
++.+.+
T Consensus 126 ~~~~~~ 131 (136)
T 2fo7_A 126 YQKALE 131 (136)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 776654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.82 E-value=8.7e-08 Score=80.46 Aligned_cols=124 Identities=15% Similarity=0.204 Sum_probs=104.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Q 006705 297 LQNSLIDMYSKCGSLTYSRRVFDNMS---ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373 (634)
Q Consensus 297 ~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~ 373 (634)
.+..+...|...|++++|..+|+++. ..+...|..+...+...|++++|...|+++... .+.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHH
Confidence 56778899999999999999999875 346788999999999999999999999999886 3446677888888999
Q ss_pred ccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006705 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425 (634)
Q Consensus 374 ~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 425 (634)
..|++++|..+++.+.+. .+.+...+..++..|.+.|++++|.+.++++
T Consensus 81 ~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALEL---DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 999999999999998864 2345777888888888888888888888765
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.81 E-value=7.6e-06 Score=85.61 Aligned_cols=199 Identities=11% Similarity=-0.032 Sum_probs=106.9
Q ss_pred HHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH-HHHHhh
Q 006705 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYS-RRVFDN 320 (634)
Q Consensus 242 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~f~~ 320 (634)
+.+..+|+++.... +.+...|...+.-+...|+.+.|..+++..++. |.+...+.. |+...+.++. ..+.+.
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~ 268 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHH
Confidence 34567788877653 344556666666677788888888888888887 444444332 2222111111 111111
Q ss_pred cC------------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHH--HHHHHhccCcHHHHHHHHH
Q 006705 321 MS------------ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLA--VLSGCSHGGMEDRGLAVFH 386 (634)
Q Consensus 321 m~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~--ll~a~~~~g~~~~a~~~~~ 386 (634)
.. ......|...+..+.+.+..+.|..+|++. +. ..++...|.. .+... ..++.+.|..+|+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~--~~~~~~v~i~~A~lE~~-~~~d~~~ar~ife 344 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN--EGVGPHVFIYCAFIEYY-ATGSRATPYNIFS 344 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT--SCCCHHHHHHHHHHHHH-HHCCSHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC--CCCChHHHHHHHHHHHH-HCCChHHHHHHHH
Confidence 10 001234555555555666677777777777 32 1123333332 12111 1235777777777
Q ss_pred HhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHH
Q 006705 387 EIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQR 456 (634)
Q Consensus 387 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 456 (634)
...+.+ +-++..+...++...+.|+.+.|..+|+++. .....|...+..-..+|+.+.+..++++
T Consensus 345 ~al~~~---~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~ 409 (493)
T 2uy1_A 345 SGLLKH---PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQ 409 (493)
T ss_dssp HHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 776642 2234455566666677777777777777763 2445555555554555555444444433
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.78 E-value=8.9e-08 Score=91.56 Aligned_cols=199 Identities=11% Similarity=0.030 Sum_probs=137.8
Q ss_pred ChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C----ChhhH
Q 006705 259 NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY---VVLQNSLIDMYSKCGSLTYSRRVFDNMSE--R----TVISW 329 (634)
Q Consensus 259 ~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~----~~~~~ 329 (634)
+...+......+.+.|++++|...+..+++.. +.+ ...+..+...|.+.|++++|...|++..+ | ....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 45566677778889999999999999999875 223 66788899999999999999999998863 3 13467
Q ss_pred HHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChH
Q 006705 330 NAMLVGYSK--------HGMGREVVELFNLMREENKVKPDS-VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIE 400 (634)
Q Consensus 330 ~~li~~~~~--------~g~~~~A~~~~~~m~~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 400 (634)
..+..++.. .|++++|+..|++..+. .|+. ..... ...+..+... ...
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a--------------~~~~~~~~~~------~~~ 149 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDA--------------TQKIRELRAK------LAR 149 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHH--------------HHHHHHHHHH------HHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHH--------------HHHHHHHHHH------HHH
Confidence 778888888 99999999999999886 3443 22211 1111111110 112
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CCchHHHHHHHHHhccCCCCC
Q 006705 401 HYGCVVDMLGRAGRVGEALEFIKNM-PFEPT----AAILGSLLGACRVH----------YNVDIGEFVGQRLMEIEPENA 465 (634)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~p~~~ 465 (634)
.+..+...|.+.|++++|+..|+++ ...|+ ...+..+..++... |++++|...++++.+..|+++
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 3556677788888888888888775 11232 34566666666655 788899999999999999875
Q ss_pred c---hHHHHHHHHhhcCCc
Q 006705 466 G---NYVILSNLYASAGRW 481 (634)
Q Consensus 466 ~---~~~~l~~~~~~~g~~ 481 (634)
. ++..+..++.+.|++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3 233444444444443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.78 E-value=2.3e-07 Score=86.46 Aligned_cols=184 Identities=8% Similarity=-0.034 Sum_probs=117.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH-HHHHH
Q 006705 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSE--RT----VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS-VTYLA 367 (634)
Q Consensus 295 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~-~t~~~ 367 (634)
...+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|++..+...-.|.. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 33445566677788888888888887763 32 2466777788888888888888888887751111111 13333
Q ss_pred HHHHHhc------------------cCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 006705 368 VLSGCSH------------------GGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEP 429 (634)
Q Consensus 368 ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 429 (634)
+..++.. .|++++|...|+.+.+.+ +-+...+.++..+. .+....
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---P~~~~a~~a~~~l~----~~~~~~---------- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY---PNSQYTTDATKRLV----FLKDRL---------- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC---TTCTTHHHHHHHHH----HHHHHH----------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC---cCChhHHHHHHHHH----HHHHHH----------
Confidence 3344432 456677777777776532 11222222111100 000000
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCC---chHHHHHHHHhhcCCcHHHHHHHHHHhhCCC
Q 006705 430 TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENA---GNYVILSNLYASAGRWEDVTRVRELMKEKAV 496 (634)
Q Consensus 430 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 496 (634)
......+...+...|+++.|...++++++..|+++ ..+..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00112345678889999999999999999999865 5688999999999999999999999887643
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.77 E-value=7.4e-07 Score=85.48 Aligned_cols=178 Identities=10% Similarity=0.003 Sum_probs=125.6
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006705 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE-----RTVISWNAMLVGYSKHGMGREVVELFNLMR 353 (634)
Q Consensus 279 a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 353 (634)
+...++..+..+ +++......+...|...|++++|.+++.+... .+...+-.++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555544 34444455777888888888888888887633 245667778888999999999999999997
Q ss_pred HcCCCCC-----CHHHHHHHHHHH--h--ccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q 006705 354 EENKVKP-----DSVTYLAVLSGC--S--HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKN 424 (634)
Q Consensus 354 ~~~g~~p-----d~~t~~~ll~a~--~--~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 424 (634)
+. .| +..+...+..++ . ..+++.+|..+|+++... .|+...-..+..++.+.|++++|.+.++.
T Consensus 164 ~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~----~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 164 NA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT----FPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT----SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh----CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 64 56 356666666662 2 234899999999998754 35433434445578899999999999876
Q ss_pred C-CC-----------CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCc
Q 006705 425 M-PF-----------EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAG 466 (634)
Q Consensus 425 m-~~-----------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 466 (634)
+ .. +.|..+...++......|+ .+.++.+++.+..|+++.
T Consensus 237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 4 11 2345556566666666676 788999999999999753
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-08 Score=88.76 Aligned_cols=140 Identities=9% Similarity=0.001 Sum_probs=100.5
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcC
Q 006705 335 GYSKHGMGREVVELFNLMREENKVKPD-SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAG 413 (634)
Q Consensus 335 ~~~~~g~~~~A~~~~~~m~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 413 (634)
.+...|++++|++.+++.... .|+ ...+..+...|...|++++|...|+...+.. +-+...|..+..+|.+.|
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~---~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS---PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ---ERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS---HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTT
T ss_pred HHHHcChHHHHHHHHHHhccc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcC
Confidence 344456677777777766432 333 3455566777778888888888888777531 335777888888888888
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHH-HHHHHhccCCCCCchHHHHHHHHhhcCC
Q 006705 414 RVGEALEFIKNM-PFEP-TAAILGSLLGACRVHYNVDIGEF-VGQRLMEIEPENAGNYVILSNLYASAGR 480 (634)
Q Consensus 414 ~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 480 (634)
++++|+..|++. ...| +...|..+...+...|+.+++.. .++++++++|+++.+|.....++.+.|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888888775 3333 56678888888888888876554 5688999999999999888888887774
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.77 E-value=3e-08 Score=108.81 Aligned_cols=169 Identities=10% Similarity=-0.075 Sum_probs=119.0
Q ss_pred HhcCCHHHHHHHHhhcC-----------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Q 006705 306 SKCGSLTYSRRVFDNMS-----------ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH 374 (634)
Q Consensus 306 ~~~g~~~~A~~~f~~m~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~ 374 (634)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|++..+. -+-+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 56677777777777664 235567777777788888888888888877765 23345667777777777
Q ss_pred cCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHH
Q 006705 375 GGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEF 452 (634)
Q Consensus 375 ~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~ 452 (634)
.|++++|...|++..+.. +.+...|..+..+|.+.|++++ ++.|++. .. +.+...|..+..++...|++++|..
T Consensus 480 ~g~~~~A~~~~~~al~l~---P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF---PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS---TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 888888888888777531 2256677777778888888877 7777765 22 2356677777778888888888888
Q ss_pred HHHHHhccCCCCCchHHHHHHHHhhcCC
Q 006705 453 VGQRLMEIEPENAGNYVILSNLYASAGR 480 (634)
Q Consensus 453 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 480 (634)
.++++.+++|++...+..++.+|...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 8888888888877777778777766555
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.3e-07 Score=91.75 Aligned_cols=174 Identities=9% Similarity=-0.041 Sum_probs=131.4
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhcc
Q 006705 313 YSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392 (634)
Q Consensus 313 ~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 392 (634)
.....+......+...+..+...+.+.|++++|+..|++..+. -+-+...+..+...+...|++++|...++.+...
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~- 180 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ- 180 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-
Confidence 3444444444445566677777888889999999999988875 2335567778888888999999999998888743
Q ss_pred CCccCChHHHHHHH-HHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC--Cch
Q 006705 393 DGFEPEIEHYGCVV-DMLGRAGRVGEALEFIKNM-P-FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN--AGN 467 (634)
Q Consensus 393 ~~~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~ 467 (634)
.|+........ ..+.+.++.++|.+.+++. . .+.+...+..+...+...|++++|...++++++.+|++ ...
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 45544333333 2356777778888887775 2 23467788888899999999999999999999999987 778
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 468 YVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 468 ~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
+..|+.+|...|+.++|...+++..
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 9999999999999999988887653
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.8e-07 Score=83.34 Aligned_cols=63 Identities=3% Similarity=-0.089 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC--CchHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 430 TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN--AGNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 430 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
+...+..+...+...|++++|...++++++.+|+. +..+..++.+|...|+.++|...+++..
T Consensus 107 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 107 NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 45566666666667777777777777777777653 4467777777888888888777777654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.66 E-value=8.1e-07 Score=97.36 Aligned_cols=189 Identities=11% Similarity=0.006 Sum_probs=144.6
Q ss_pred hcccchHHHHHHHHHHH--------HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhc
Q 006705 271 SGLAALGHGKQVHSHVL--------RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKH 339 (634)
Q Consensus 271 ~~~~~~~~a~~i~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~ 339 (634)
...|++++|.+.+..++ +. .+.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67788889998888887 33 255677888888999999999999999998773 4678899999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHH
Q 006705 340 GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419 (634)
Q Consensus 340 g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 419 (634)
|++++|++.|++..+. -+-+...+..+..++...|++++ ...|+...+.. +.+...|..+..+|.+.|++++|+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~---P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN---DGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC---CchHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999876 23345778888889999999999 99999998642 336788999999999999999999
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHHHHhcCC-----chHHHHHHHHHhccCCCCCc
Q 006705 420 EFIKNM-PFEPT-AAILGSLLGACRVHYN-----VDIGEFVGQRLMEIEPENAG 466 (634)
Q Consensus 420 ~~~~~m-~~~p~-~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~p~~~~ 466 (634)
+.|++. ...|+ ...|..+..++...++ .+...++.+.+.++.+.++.
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 999997 45666 4567667777655554 23344455555555555444
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.65 E-value=1e-06 Score=81.11 Aligned_cols=161 Identities=6% Similarity=-0.113 Sum_probs=114.1
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHhhhccCCccCChH
Q 006705 325 TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG----MEDRGLAVFHEIVDCKDGFEPEIE 400 (634)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g----~~~~a~~~~~~~~~~~~~~~p~~~ 400 (634)
++.++..+...|...+++++|++.|++..+. | +...+..+...|.. + ++++|..+|+...+. + +..
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~--g---~~~ 86 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-G---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA--G---SKS 86 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-T---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT--T---CHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-C---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC--C---CHH
Confidence 5566666666677777777777777777665 3 44555556566666 5 777777777777653 3 556
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCCchHHHHHHHHHhccCCCCCchH
Q 006705 401 HYGCVVDMLGR----AGRVGEALEFIKNM-PFEPT---AAILGSLLGACRV----HYNVDIGEFVGQRLMEIEPENAGNY 468 (634)
Q Consensus 401 ~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~ 468 (634)
.+..|..+|.. .+++++|++.|++. ...|. ...+..|...|.. .++.++|...++++.+. |.++..+
T Consensus 87 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~ 165 (212)
T 3rjv_A 87 GEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAE 165 (212)
T ss_dssp HHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHH
T ss_pred HHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHH
Confidence 67777777766 67788888888776 32332 5677777777776 67888888888888877 5556788
Q ss_pred HHHHHHHhhc-C-----CcHHHHHHHHHHhhCCC
Q 006705 469 VILSNLYASA-G-----RWEDVTRVRELMKEKAV 496 (634)
Q Consensus 469 ~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 496 (634)
..|..+|... | ++++|.+.++...+.|.
T Consensus 166 ~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 166 YWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 8888888764 3 88999999998877664
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=2.4e-07 Score=99.59 Aligned_cols=160 Identities=9% Similarity=-0.058 Sum_probs=124.7
Q ss_pred cCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 006705 308 CGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAV 384 (634)
Q Consensus 308 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~ 384 (634)
.|++++|.+.|++..+ .+...|..+...|.+.|++++|++.|++..+. -+.+...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999998874 35778999999999999999999999999875 234567888899999999999999999
Q ss_pred HHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhc---CCchHHHHHHHHHhc
Q 006705 385 FHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVH---YNVDIGEFVGQRLME 459 (634)
Q Consensus 385 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~ 459 (634)
+++..+.. +.+...+..+...|.+.|++++|.+.+++. .. +.+...+..+...+... |+.++|...++++++
T Consensus 80 ~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAA---PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 99998642 345789999999999999999999999986 22 34577888899999999 999999999999999
Q ss_pred cCCCCCchHHHHH
Q 006705 460 IEPENAGNYVILS 472 (634)
Q Consensus 460 ~~p~~~~~~~~l~ 472 (634)
.+|.+...|..+.
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999888887776
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.61 E-value=9e-07 Score=86.81 Aligned_cols=223 Identities=11% Similarity=0.007 Sum_probs=154.0
Q ss_pred hcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 006705 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316 (634)
Q Consensus 237 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 316 (634)
..|++++|.+++++..+.. +.. + +...++++.|...+..+ ...|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 3577889999998876531 111 0 11146677777666554 445777888888888
Q ss_pred HHhhcCC-----CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCC--HHHHHHHHHHHhccCcHHHHHH
Q 006705 317 VFDNMSE-----RT----VISWNAMLVGYSKHGMGREVVELFNLMREEN--KVKPD--SVTYLAVLSGCSHGGMEDRGLA 383 (634)
Q Consensus 317 ~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--g~~pd--~~t~~~ll~a~~~~g~~~~a~~ 383 (634)
.|.+..+ .+ ..+|+.+...|.+.|++++|+..|++..+.. .-.|. ..++..+...|.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 7776542 11 3478888889999999999999998865430 01122 3567778888888 99999999
Q ss_pred HHHHhhhccCCcc---CChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCchHHHH
Q 006705 384 VFHEIVDCKDGFE---PEIEHYGCVVDMLGRAGRVGEALEFIKNM----PFEPT----AAILGSLLGACRVHYNVDIGEF 452 (634)
Q Consensus 384 ~~~~~~~~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~~~~~~a~~ 452 (634)
.|+...+.++... ....++..+...|.+.|++++|+..|++. +..++ ...+..+...+...|+++.|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999876421100 01467888999999999999999999876 11122 2256666677788899999999
Q ss_pred HHHHHhccCCCCCch-----HHHHHHHHhhcCCcHHHHHH
Q 006705 453 VGQRLMEIEPENAGN-----YVILSNLYASAGRWEDVTRV 487 (634)
Q Consensus 453 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~ 487 (634)
.+++.+ +.|..... ...++..| ..|+.+.+.++
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999999 99875433 33455555 56776666553
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=5.7e-07 Score=96.68 Aligned_cols=147 Identities=10% Similarity=-0.055 Sum_probs=109.7
Q ss_pred ccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHH
Q 006705 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELF 349 (634)
Q Consensus 273 ~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 349 (634)
.|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467889999999888764 45678888999999999999999999998764 35778899999999999999999999
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHc---CCHHHHHHHHHhC
Q 006705 350 NLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA---GRVGEALEFIKNM 425 (634)
Q Consensus 350 ~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m 425 (634)
++..+. .+.+...+..+..++...|++++|.+.++...+.. +.+...+..+...|... |+.++|.+.+++.
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL---PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 999886 23456788888899999999999999999998642 34577888999999999 9999999999886
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.9e-06 Score=83.47 Aligned_cols=161 Identities=6% Similarity=-0.014 Sum_probs=107.2
Q ss_pred hhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhhHHHH-HHHH
Q 006705 260 YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE--RTVISWNAM-LVGY 336 (634)
Q Consensus 260 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~l-i~~~ 336 (634)
...+..+...+...|++++|...++.+++.. +.+...+..|...|.+.|++++|...|+++.. |+....... ...+
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l 195 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHH
Confidence 3445555556666777777777777776664 44566777777888888888888888888764 433322222 2235
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHH
Q 006705 337 SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416 (634)
Q Consensus 337 ~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 416 (634)
.+.++.++|++.|++.... -+.+...+..+..++...|++++|...|..+.+.. .-..+...+..++..|...|+.+
T Consensus 196 ~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHcCCCC
Confidence 6667777788888777765 23445677777777888888888888888877642 11112566777777777778777
Q ss_pred HHHHHHHh
Q 006705 417 EALEFIKN 424 (634)
Q Consensus 417 ~A~~~~~~ 424 (634)
+|...+++
T Consensus 273 ~a~~~~r~ 280 (287)
T 3qou_A 273 ALASXYRR 280 (287)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 77776654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.59 E-value=8.4e-06 Score=78.90 Aligned_cols=149 Identities=11% Similarity=0.127 Sum_probs=90.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHH--HHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCC---
Q 006705 340 GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMED--RGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR--- 414 (634)
Q Consensus 340 g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--- 414 (634)
+++++++++++++.+. -+-|..+|..-...+.+.|.++ +++++++.+.+.. .-|-..|+.-...+.+.|+
T Consensus 124 ~~~~~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d---~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 124 FDPYREFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD---LKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp CCTHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHSSGGGCC
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhccccch
Confidence 4556666666666654 2334455555444455555555 6666666666431 2344555555555555554
Q ss_pred ---HHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHhccC---CCCCchHHHHHHHHhhcCCcHHHH
Q 006705 415 ---VGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDI-GEFVGQRLMEIE---PENAGNYVILSNLYASAGRWEDVT 485 (634)
Q Consensus 415 ---~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~ 485 (634)
++++++.++++ ..+-|...|+-+-..+...|+... ...+.+++.+++ |.++.++..++++|.+.|+.++|.
T Consensus 199 ~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 66666666654 223466677777666666666433 445666666555 666777778888888888888888
Q ss_pred HHHHHHhh
Q 006705 486 RVRELMKE 493 (634)
Q Consensus 486 ~~~~~m~~ 493 (634)
++++.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88888765
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.6e-06 Score=79.58 Aligned_cols=183 Identities=9% Similarity=-0.016 Sum_probs=103.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCccChhh-HHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 006705 230 AIISGYAQLGLDEEAIELFRKLQVEGMISNYVT-YASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKC 308 (634)
Q Consensus 230 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~ 308 (634)
.....+.+.|++++|+..|++..+. .|+... +.. . . ... .........+.+...|.+.
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-~-~---~~~--------------~~~~~~~~~~~lg~~~~~~ 67 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-T-N---VDK--------------NSEISSKLATELALAYKKN 67 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-H-H---SCT--------------TSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-h-h---hcc--------------hhhhhHHHHHHHHHHHHHC
Confidence 3444566777777777777777664 333221 111 0 0 000 0001122334466677777
Q ss_pred CCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCc--HHHHHH
Q 006705 309 GSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM--EDRGLA 383 (634)
Q Consensus 309 g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~--~~~a~~ 383 (634)
|++++|...|++..+ .+...|..+...|...|++++|+..|++..+. -+-+..++..+..++...|. .+.+..
T Consensus 68 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~ 145 (208)
T 3urz_A 68 RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLET 145 (208)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 777777777776652 35667777777788888888888888877765 22344566666666654443 333444
Q ss_pred HHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 006705 384 VFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTAAILGSLLG 439 (634)
Q Consensus 384 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~ 439 (634)
.+.... ...|....+..+...+...|++++|...|++. ...|+......+..
T Consensus 146 ~~~~~~----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 146 DYKKLS----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHC-------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHh----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 444433 22232333444555666677888888888775 55677655554443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.56 E-value=2.7e-06 Score=82.78 Aligned_cols=161 Identities=6% Similarity=-0.011 Sum_probs=118.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHH----HHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCC----hHHH
Q 006705 331 AMLVGYSKHGMGREVVELFNLMREENKVKPDSV----TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE----IEHY 402 (634)
Q Consensus 331 ~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~----~~~~ 402 (634)
..+..+...|++++|.+++++..+.....|+.. .+..+...+...|++++|...|+.+.+.. .-.++ ..++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~-~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQ-LTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTC-CCCSCTTHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHh-cccccHHHHHHHH
Confidence 346678889999999999998876522333322 23346666777889999999999988742 11222 3468
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCC-------C-CCC-HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC------Cch
Q 006705 403 GCVVDMLGRAGRVGEALEFIKNMP-------F-EPT-AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN------AGN 467 (634)
Q Consensus 403 ~~li~~~~~~g~~~~A~~~~~~m~-------~-~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~ 467 (634)
+.+...|...|++++|...++++- . .+. ..++..+...|...|++++|...+++++++.+.. ...
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 889999999999999998888751 1 111 2367788899999999999999999888765432 457
Q ss_pred HHHHHHHHhhcCC-cHHHHHHHHHHh
Q 006705 468 YVILSNLYASAGR-WEDVTRVRELMK 492 (634)
Q Consensus 468 ~~~l~~~~~~~g~-~~~A~~~~~~m~ 492 (634)
|..++.+|.+.|+ +++|.+.+++..
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 8899999999995 699999888774
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.56 E-value=9.8e-07 Score=78.53 Aligned_cols=153 Identities=16% Similarity=0.064 Sum_probs=94.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHH--Hh
Q 006705 197 GSSLLDMYAKAGRIHEARGVFECLPE---RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA--LS 271 (634)
Q Consensus 197 ~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~ 271 (634)
...+...+.+.|++++|...|++..+ .+...|..+...|.+.|++++|+..|++.... .|+... ..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~-~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSY-KSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHH-HHHHHHHHHH
Confidence 33456667778888888888877764 35667777788888888888888888777654 333322 222111 11
Q ss_pred cccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC---hhhHHHHHHHHHhcCChHHHH
Q 006705 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE--RT---VISWNAMLVGYSKHGMGREVV 346 (634)
Q Consensus 272 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~---~~~~~~li~~~~~~g~~~~A~ 346 (634)
..+....+...+...++.. +.+...+..+...|.+.|++++|...|+++.+ |+ ...|..+...|...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2122233556666666554 34566666677777777777777777766543 21 346666777777777777777
Q ss_pred HHHHHHH
Q 006705 347 ELFNLMR 353 (634)
Q Consensus 347 ~~~~~m~ 353 (634)
..|++..
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776554
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-07 Score=82.22 Aligned_cols=122 Identities=12% Similarity=-0.021 Sum_probs=101.0
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhccCCccC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhc
Q 006705 368 VLSGCSHGGMEDRGLAVFHEIVDCKDGFEP-EIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVH 444 (634)
Q Consensus 368 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~ 444 (634)
|...+...|++++|+..++.... ..| +...+-.+...|.+.|++++|++.|++. .. +.+..+|..+...+...
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~----~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP----SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC----SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc----cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 33456677899999999998874 244 3455677899999999999999999986 33 34678899999999999
Q ss_pred CCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHH-HHHHhh
Q 006705 445 YNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRV-RELMKE 493 (634)
Q Consensus 445 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~ 493 (634)
|++++|...++++++++|+++.+|..++.+|.+.|++++|.+. +++..+
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987765 466654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.54 E-value=4e-07 Score=78.51 Aligned_cols=100 Identities=8% Similarity=-0.013 Sum_probs=88.1
Q ss_pred ccC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHH
Q 006705 395 FEP-EIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVIL 471 (634)
Q Consensus 395 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 471 (634)
+.| +...+..+...|.+.|++++|...|++. .. +.+...|..+..++...|++++|...++++.+++|+++..|..+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 344 4667888888899999999999999887 22 34678899999999999999999999999999999999999999
Q ss_pred HHHHhhcCCcHHHHHHHHHHhhC
Q 006705 472 SNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 472 ~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
+.+|.+.|++++|.+.+++..+.
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.1e-06 Score=86.22 Aligned_cols=126 Identities=8% Similarity=-0.023 Sum_probs=55.4
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHc----CCC-CchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhh
Q 006705 263 YASVLTALSGLAALGHGKQVHSHVLRF----EIP-SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE-----RT----VIS 328 (634)
Q Consensus 263 ~~~ll~~~~~~~~~~~a~~i~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~----~~~ 328 (634)
|..+...+...|++++|...+...++. |-+ ....+++.+...|.+ |++++|...|++..+ .+ ..+
T Consensus 79 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~ 157 (307)
T 2ifu_A 79 FEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAEL 157 (307)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHH
Confidence 344444444445555555544444322 100 012233444444444 555555555444321 00 234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhh
Q 006705 329 WNAMLVGYSKHGMGREVVELFNLMREEN---KVKPDS-VTYLAVLSGCSHGGMEDRGLAVFHEIV 389 (634)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~m~~~~---g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~ 389 (634)
++.+...|.+.|++++|++.|++..... +..+.. .++..+..++...|++++|...|+...
T Consensus 158 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 158 IGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5555555666666666666665554420 111111 133344444444555555555555554
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.54 E-value=3e-06 Score=77.75 Aligned_cols=92 Identities=10% Similarity=-0.103 Sum_probs=68.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCc
Q 006705 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377 (634)
Q Consensus 298 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~ 377 (634)
+..+...|...|++++|...|++...++...|..+...|.+.|++++|++.|++..+. .+.+...+..+..++...|+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHccc
Confidence 3445666777788888888888877777777888888888888888888888877765 23455667777777777788
Q ss_pred HHHHHHHHHHhhhc
Q 006705 378 EDRGLAVFHEIVDC 391 (634)
Q Consensus 378 ~~~a~~~~~~~~~~ 391 (634)
+++|...|+...+.
T Consensus 87 ~~~A~~~~~~al~~ 100 (213)
T 1hh8_A 87 YDLAIKDLKEALIQ 100 (213)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 88888777777753
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.8e-06 Score=77.87 Aligned_cols=137 Identities=9% Similarity=0.002 Sum_probs=103.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHH
Q 006705 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDML 409 (634)
Q Consensus 330 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~ 409 (634)
+.+...|.+.|++++|+..|++..+. -+-+...+..+..++...|++++|...|+.+.+.. +.+...+..+...|
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE---ADNLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHH
Confidence 34888999999999999999999986 23456788899999999999999999999999642 33678899999988
Q ss_pred HHcCC--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHH
Q 006705 410 GRAGR--VGEALEFIKNMPFEPTA--AILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSN 473 (634)
Q Consensus 410 ~~~g~--~~~A~~~~~~m~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 473 (634)
...|. .+.+...++... .|+. ..|..+..++...|++++|...+++++++.|++ .....|..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~ 198 (208)
T 3urz_A 133 YLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHH
Confidence 76654 455666776663 3443 344455566777899999999999999999973 33333433
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=3.9e-07 Score=78.54 Aligned_cols=97 Identities=8% Similarity=-0.053 Sum_probs=85.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHH
Q 006705 398 EIEHYGCVVDMLGRAGRVGEALEFIKNM-P-FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLY 475 (634)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 475 (634)
+...+..+...+.+.|++++|...|++. . .+.+...|..+..++...|++++|...++++++++|+++..+..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 5667778888999999999999999886 2 2347788889999999999999999999999999999999999999999
Q ss_pred hhcCCcHHHHHHHHHHhhC
Q 006705 476 ASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 476 ~~~g~~~~A~~~~~~m~~~ 494 (634)
...|++++|.+.++...+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.50 E-value=1.2e-05 Score=84.21 Aligned_cols=373 Identities=8% Similarity=-0.046 Sum_probs=212.8
Q ss_pred cC-CchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC--CCcchHHHHHHHHHhCCC-hhHHHHH
Q 006705 71 QR-TLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE--RNVVSWTAMISAYSQKAH-SFEALNL 146 (634)
Q Consensus 71 ~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~~ 146 (634)
.| ++..|+.+++.++.. -|. |+.+.+..+|++... |++..|...+.-..+.+. .+....+
T Consensus 7 ~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~ 70 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEV 70 (493)
T ss_dssp -----CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHH
T ss_pred cCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHH
Confidence 45 477888888887765 232 889999999998765 888899988887777663 3456677
Q ss_pred HHHHHHC-CCCC-ChhhHHHHHHHHh----ccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccC
Q 006705 147 FIRMLRS-DTEP-NEFTFATVLTSCA----GAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECL 220 (634)
Q Consensus 147 ~~~m~~~-g~~p-~~~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 220 (634)
|+..+.. |..| +...|...+..+. ..++++.+..+++.+++.....-..+|......- +..+...+.++..
T Consensus 71 fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~-- 147 (493)
T 2uy1_A 71 YEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFE-LELNKITGKKIVG-- 147 (493)
T ss_dssp HHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-HHHCHHHHHHHHH--
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHH-HHhccccHHHHHH--
Confidence 7777653 4434 4455555555433 2356777888888888632111112222221111 1111222222221
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcc--c-----chHHHHHHHHHHHHcCCCC
Q 006705 221 PERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGL--A-----ALGHGKQVHSHVLRFEIPS 293 (634)
Q Consensus 221 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--~-----~~~~a~~i~~~~~~~~~~~ 293 (634)
... +.+..|..+++++...--..+...|...+.--... + ..+.+..+++.++... +.
T Consensus 148 -------------~~~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~ 211 (493)
T 2uy1_A 148 -------------DTL--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YY 211 (493)
T ss_dssp -------------HHH--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TT
T ss_pred -------------HHh--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CC
Confidence 111 12333444444333210001122333322221111 0 1234667888887754 56
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCC-C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC--------CCCC---
Q 006705 294 YVVLQNSLIDMYSKCGSLTYSRRVFDNMSE-R-TVISWNAMLVGYSKHGMGREVVELFNLMREEN--------KVKP--- 360 (634)
Q Consensus 294 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------g~~p--- 360 (634)
+..+|-..+..+.+.|+++.|..+|++... | +...|. .|+...+.++. ++.+.+.. +..+
T Consensus 212 ~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~ 284 (493)
T 2uy1_A 212 AEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKE 284 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccc
Confidence 678888888888999999999999986543 3 222232 23332222222 33332210 0011
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcC-CHHHHHHHHHhC--CCCCCHHHHHHH
Q 006705 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAG-RVGEALEFIKNM--PFEPTAAILGSL 437 (634)
Q Consensus 361 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m--~~~p~~~~~~~l 437 (634)
....|...+....+.+.++.|..+|+.. +.. + .+...|...+.+-.+.+ +.+.|..+|+.. ..+.+...|...
T Consensus 285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~y 360 (493)
T 2uy1_A 285 LDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-G--VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEF 360 (493)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-C--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-C--CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 1244566666666677899999999988 321 2 34555654444444444 699999999875 222234567777
Q ss_pred HHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 438 LGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 438 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
+.-....|+.+.+..+++++. .....+...++.=...|+.+.+.++++++..
T Consensus 361 id~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 361 FLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777788899999999998873 3345677777776778999999998887753
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.50 E-value=2.4e-06 Score=79.46 Aligned_cols=185 Identities=13% Similarity=-0.030 Sum_probs=129.2
Q ss_pred hhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCC--chhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCh----hhHHH
Q 006705 260 YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPS--YVVLQNSLIDMYSKCGSLTYSRRVFDNMSE--RTV----ISWNA 331 (634)
Q Consensus 260 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~----~~~~~ 331 (634)
...+......+...|++++|...+..+++..... ....+..+...|.+.|++++|...|++..+ |+. .++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3445566677889999999999999999864321 235777889999999999999999999763 332 24555
Q ss_pred HHHHHHh------------------cCChHHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhhhcc
Q 006705 332 MLVGYSK------------------HGMGREVVELFNLMREENKVKPDSV-TYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392 (634)
Q Consensus 332 li~~~~~------------------~g~~~~A~~~~~~m~~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 392 (634)
+..++.+ .|++++|+..|+++.+. .|+.. ..... .....+...
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~--------------~~l~~~~~~- 145 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDAT--------------KRLVFLKDR- 145 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHH--------------HHHHHHHHH-
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHH--------------HHHHHHHHH-
Confidence 5555554 57899999999999875 45543 22111 111111110
Q ss_pred CCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCch
Q 006705 393 DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTA----AILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGN 467 (634)
Q Consensus 393 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 467 (634)
.......+...|.+.|++++|+..|+++ ...|+. ..+..+..++...|+.++|...++.+....|++..+
T Consensus 146 -----~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 146 -----LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp -----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred -----HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 0112235677888899999999998886 222332 457778889999999999999999988888886543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.47 E-value=6.8e-05 Score=72.53 Aligned_cols=228 Identities=9% Similarity=-0.006 Sum_probs=166.2
Q ss_pred cCChHHHHHHHHHHhhcCCccChhh-HHHHHHHHhccc--chHHHHHHHHHHHHcCCCCchhHHHHHHHHH----Hhc--
Q 006705 238 LGLDEEAIELFRKLQVEGMISNYVT-YASVLTALSGLA--ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMY----SKC-- 308 (634)
Q Consensus 238 ~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~--~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~----~~~-- 308 (634)
....++|+.++..+... .|+..| ++.--..+...+ +++++...+..++... +.+..+|+.--..+ .+.
T Consensus 46 ~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 46 EEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccc
Confidence 33446777777777764 455443 455555555666 7778888887777765 44555666544444 444
Q ss_pred -CCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCc-----
Q 006705 309 -GSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGR--EVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM----- 377 (634)
Q Consensus 309 -g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~----- 377 (634)
++++++..+++++.+ +|..+|+--.-.+.+.|.++ ++++.++++.+. -.-|...|+.-.....+.+.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhh
Confidence 788899998888763 57788888888888888888 999999999987 34466777766666666666
Q ss_pred -HHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCCchHH
Q 006705 378 -EDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE-ALEFIKNM-PF----EPTAAILGSLLGACRVHYNVDIG 450 (634)
Q Consensus 378 -~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m-~~----~p~~~~~~~ll~~~~~~~~~~~a 450 (634)
++++++.++.+... -+-|...|+.+...+.+.|+..+ +..+..+. .. ..+...+..+...+...|+.++|
T Consensus 201 ~~~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 201 TIDEELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 88999999988864 24578889999999999988554 55566665 11 34778888899999999999999
Q ss_pred HHHHHHHhc-cCCCCCchHHHHHH
Q 006705 451 EFVGQRLME-IEPENAGNYVILSN 473 (634)
Q Consensus 451 ~~~~~~~~~-~~p~~~~~~~~l~~ 473 (634)
..+++.+.+ .+|.....|...+.
T Consensus 278 ~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 278 RTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHhccChHHHHHHHHHHh
Confidence 999999986 79987666655443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.1e-06 Score=73.16 Aligned_cols=107 Identities=9% Similarity=-0.033 Sum_probs=56.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 006705 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGAC 441 (634)
Q Consensus 364 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~ 441 (634)
.+......+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|++.+++. .. +.+...|..+..++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD---PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 34444445555555555555555555321 223455555555555555555555555543 11 22344555555566
Q ss_pred HhcCCchHHHHHHHHHhccCCCCCchHHHHHH
Q 006705 442 RVHYNVDIGEFVGQRLMEIEPENAGNYVILSN 473 (634)
Q Consensus 442 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 473 (634)
...|++++|...++++++++|++...+..|.+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 66666666666666666666665555444443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.44 E-value=2.9e-06 Score=77.87 Aligned_cols=123 Identities=11% Similarity=-0.065 Sum_probs=87.1
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHh
Q 006705 366 LAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-P-FEPTAAILGSLLGACRV 443 (634)
Q Consensus 366 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~ 443 (634)
..+...+...|++++|...|+... .|+...+..+...|.+.|++++|++.+++. . .+.+...|..+..++..
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 334445556666666666665442 345666666667777777777777766654 1 12355666777777777
Q ss_pred cCCchHHHHHHHHHhccCCCCC----------------chHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 444 HYNVDIGEFVGQRLMEIEPENA----------------GNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 444 ~~~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
.|++++|...++++.+..|.+. ..+..++.+|.+.|++++|.+.++...+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 7777777777777777777665 78899999999999999999999998765
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.43 E-value=4.4e-06 Score=81.18 Aligned_cols=165 Identities=6% Similarity=-0.022 Sum_probs=118.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CCH----HHHHHHHHHHhccCcHHHHHHHHHHhhhccCC-ccCC--
Q 006705 327 ISWNAMLVGYSKHGMGREVVELFNLMREENKVK-PDS----VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG-FEPE-- 398 (634)
Q Consensus 327 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~-pd~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~~p~-- 398 (634)
..+...+..+...|++++|++.+++..+. ... ++. ..+..+...+...|++++|...++...+.... ..+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKK-EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcc-ccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34555677788899999999999887765 221 111 22334455677888999999999888753211 1112
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCC------
Q 006705 399 IEHYGCVVDMLGRAGRVGEALEFIKNM----PFEPT-----AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE------ 463 (634)
Q Consensus 399 ~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------ 463 (634)
..+|+.+...|...|++++|...+++. ...|+ ..++..+...|...|++++|...+++++++.++
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 457888999999999999999988775 11222 257788888999999999999999888765432
Q ss_pred CCchHHHHHHHHhhcCCcHHH-HHHHHHHh
Q 006705 464 NAGNYVILSNLYASAGRWEDV-TRVRELMK 492 (634)
Q Consensus 464 ~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 492 (634)
-..+|..++.+|.+.|++++| ...+++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 145688899999999999999 77677654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.41 E-value=5.8e-07 Score=86.86 Aligned_cols=188 Identities=9% Similarity=-0.039 Sum_probs=110.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcC--C-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 006705 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMS--E-RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG 371 (634)
Q Consensus 295 ~~~~~~li~~~~~~g~~~~A~~~f~~m~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a 371 (634)
...+..+...|.+.|++++|...|++.. . .+...|..+...|.+.|++++|+..+++..+. .+-+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 3445555666666677777766666554 2 25566666777777777777777777776653 22344566666667
Q ss_pred HhccCcHHHHHHHHHHhhhccCCccCCh-HHHHHHHH---HHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc
Q 006705 372 CSHGGMEDRGLAVFHEIVDCKDGFEPEI-EHYGCVVD---MLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNV 447 (634)
Q Consensus 372 ~~~~g~~~~a~~~~~~~~~~~~~~~p~~-~~~~~li~---~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~ 447 (634)
+...|++++|...|+...+. .|+. ..+...+. ...+...+.. .......++......+ ..+. .|+.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l----~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~l-~~l~-~~~~ 151 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL----AKEQRLNFGDDIPSALRIAKKKRWNS----IEERRIHQESELHSYL-TRLI-AAER 151 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH----HHHTTCCCCSHHHHHHHHHHHHHHHH----HHHTCCCCCCHHHHHH-HHHH-HHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh----CccchhhHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHH-HHHH-HHHH
Confidence 77777777777777766643 2211 01111111 1122212221 1112223333333333 2222 5778
Q ss_pred hHHHHHHHHHhccCCCCCchHHHHHHHHhhc-CCcHHHHHHHHHHhhC
Q 006705 448 DIGEFVGQRLMEIEPENAGNYVILSNLYASA-GRWEDVTRVRELMKEK 494 (634)
Q Consensus 448 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 494 (634)
+.|...++++.+.+|++......+...+.+. +.+++|.++|....+.
T Consensus 152 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 152 ERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 8888888888888888766666677777766 6788999999888653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.6e-06 Score=72.22 Aligned_cols=100 Identities=9% Similarity=0.058 Sum_probs=89.3
Q ss_pred ccCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHH
Q 006705 395 FEPE-IEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVIL 471 (634)
Q Consensus 395 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 471 (634)
+.|+ ...+......|.+.|++++|++.|++. .. +.+...|..+..++...|++++|...++++++++|+++..|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4454 466788899999999999999999986 22 34688899999999999999999999999999999999999999
Q ss_pred HHHHhhcCCcHHHHHHHHHHhhC
Q 006705 472 SNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 472 ~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
+.+|...|++++|.+.+++..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998764
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.1e-05 Score=74.18 Aligned_cols=159 Identities=8% Similarity=-0.087 Sum_probs=85.8
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccC----CcHHHHHHHHHHHHhCCCCchHHHH
Q 006705 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAF----GFELGKQIHSLIIKSNFESHIYVGS 198 (634)
Q Consensus 123 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~g~~~~~~~~~ 198 (634)
++.++..|-..|...+++++|+..|++..+.| +...+..+-..+.. + +.++|...+....+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 44455555555555555666666665555543 33444444444444 4 5666666666665543 344455
Q ss_pred HHHHHHHh----cCCHHHHHHHHccCCCCC-----hhhHHHHHHHHHh----cCChHHHHHHHHHHhhcCCccChhhHHH
Q 006705 199 SLLDMYAK----AGRIHEARGVFECLPERD-----VVSCTAIISGYAQ----LGLDEEAIELFRKLQVEGMISNYVTYAS 265 (634)
Q Consensus 199 ~li~~y~~----~g~~~~A~~~~~~m~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 265 (634)
.|..+|.. .+++++|.+.|++..+.+ +.++..|...|.. .+++++|+.+|++..+. ..+...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHH
Confidence 55555555 566666666666654432 3566666666666 55666666666666554 122233444
Q ss_pred HHHHHhcc------cchHHHHHHHHHHHHcC
Q 006705 266 VLTALSGL------AALGHGKQVHSHVLRFE 290 (634)
Q Consensus 266 ll~~~~~~------~~~~~a~~i~~~~~~~~ 290 (634)
+-..+... .+.++|...+....+.|
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 44444321 25666666666666555
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.40 E-value=2.5e-06 Score=70.23 Aligned_cols=113 Identities=16% Similarity=0.133 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 006705 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM--PFEPTAAILGSLLGA 440 (634)
Q Consensus 363 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~ 440 (634)
..+..+...+...|++++|..+++.+.+.. +.+...+..+...|.+.|++++|...++++ ..+.+..+|..+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 344444555555555555555555555421 223445555555666666666666665554 112345556666666
Q ss_pred HHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhc
Q 006705 441 CRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASA 478 (634)
Q Consensus 441 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 478 (634)
+...|+++.|...++++.+..|.++..+..+..++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 66666777777777777777777666666666665543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.39 E-value=3e-06 Score=72.26 Aligned_cols=97 Identities=7% Similarity=-0.140 Sum_probs=84.2
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHH
Q 006705 398 EIEHYGCVVDMLGRAGRVGEALEFIKNM-P-FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLY 475 (634)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 475 (634)
+...+..+...+.+.|++++|...|++. . .+.+...|..+..++...|++++|...++++.+++|+++..+..++.+|
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 4556677788888999999999999886 2 2346778888899999999999999999999999999999999999999
Q ss_pred hhcCCcHHHHHHHHHHhhC
Q 006705 476 ASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 476 ~~~g~~~~A~~~~~~m~~~ 494 (634)
...|++++|.+.++...+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999988654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.38 E-value=3.4e-06 Score=73.70 Aligned_cols=125 Identities=8% Similarity=-0.048 Sum_probs=83.0
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHH
Q 006705 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-P-FEPTAAILGSLLGACR 442 (634)
Q Consensus 365 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~ 442 (634)
+..+...+...|++++|...|+...+. .+.+...+..+...|...|++++|.+.+++. . .+.+...|..+..++.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 444445555666666666666666542 1234556666666666677777777666654 1 1234566777777777
Q ss_pred hcCCchHHHHHHHHHhccCCCCCchHHH--HHHHHhhcCCcHHHHHHHHHHh
Q 006705 443 VHYNVDIGEFVGQRLMEIEPENAGNYVI--LSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 443 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~--l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
..|++++|...++++.+..|.+...+.. ++..+.+.|++++|.+.+....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7888888888888888888887766644 4444778889999988888764
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=3.6e-06 Score=69.91 Aligned_cols=116 Identities=7% Similarity=-0.064 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 006705 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGA 440 (634)
Q Consensus 363 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~ 440 (634)
..+..+...+...|++++|...++...+. .+.+...+..+...|...|++++|.+.+++. .. +.+...|..+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 34444455555556666666666655542 1224555555666666666666666666554 11 2345566666666
Q ss_pred HHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCc
Q 006705 441 CRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW 481 (634)
Q Consensus 441 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 481 (634)
+...|+++.|...++++.+..|+++..+..++.++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 77777777777777777777777777777777777776654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.34 E-value=3.4e-06 Score=70.50 Aligned_cols=113 Identities=8% Similarity=-0.061 Sum_probs=55.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHH
Q 006705 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-P-FEPTAAILGSLLGAC 441 (634)
Q Consensus 364 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~ 441 (634)
.+..+...+...|++++|...|+...+. .+.+...+..+...|...|++++|.+.+++. . .+.+...|..+..++
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKR---NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTT---CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3333444444444444444444444421 1123344444444444444444444444443 1 112344555555555
Q ss_pred HhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcC
Q 006705 442 RVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479 (634)
Q Consensus 442 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 479 (634)
...|++++|...++++.+..|.+...+..+..++...|
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 56666666666666666666666666666666665554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.32 E-value=4e-05 Score=74.35 Aligned_cols=94 Identities=12% Similarity=0.024 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC------C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCC-H
Q 006705 297 LQNSLIDMYSKCGSLTYSRRVFDNMSE------R----TVISWNAMLVGYSKHGMGREVVELFNLMREE---NKVKPD-S 362 (634)
Q Consensus 297 ~~~~li~~~~~~g~~~~A~~~f~~m~~------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~g~~pd-~ 362 (634)
+++.+...|...|++++|...|+++.+ . ...+|..+...|.+.|++++|++.+++..+. .+..+. .
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 344555555555555555555544431 1 1235555666666666666666666655432 012222 3
Q ss_pred HHHHHHHHHHhccCc-HHHHHHHHHHhhh
Q 006705 363 VTYLAVLSGCSHGGM-EDRGLAVFHEIVD 390 (634)
Q Consensus 363 ~t~~~ll~a~~~~g~-~~~a~~~~~~~~~ 390 (634)
.+|..+..++...|+ +++|...++....
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 556666666666673 4667666666554
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.30 E-value=2.2e-06 Score=85.15 Aligned_cols=144 Identities=9% Similarity=-0.021 Sum_probs=101.4
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHH
Q 006705 325 TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404 (634)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 404 (634)
+...|..+...|.+.|++++|+..|++..+. .|+...+ ..+.+..+ . +-....|..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~-----------~~~~~~~~----~------~~~~~~~~n 201 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSF-----------SNEEAQKA----Q------ALRLASHLN 201 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCC-----------CSHHHHHH----H------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccC-----------ChHHHHHH----H------HHHHHHHHH
Confidence 3445666666666666666666666666654 2222100 00111100 0 001467788
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcH
Q 006705 405 VVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482 (634)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 482 (634)
+..+|.+.|++++|+..+++. .. +.+...|..+..++...|++++|...++++++++|++...+..+..++.+.|+++
T Consensus 202 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 202 LAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 888888889999998888876 22 3467788888899999999999999999999999999999999999999999999
Q ss_pred HH-HHHHHHHh
Q 006705 483 DV-TRVRELMK 492 (634)
Q Consensus 483 ~A-~~~~~~m~ 492 (634)
+| .+.++.|.
T Consensus 282 ~a~~~~~~~~~ 292 (336)
T 1p5q_A 282 AREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98 44666653
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.1e-06 Score=76.30 Aligned_cols=119 Identities=5% Similarity=0.068 Sum_probs=84.9
Q ss_pred hccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH-HHhcCCc--
Q 006705 373 SHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGA-CRVHYNV-- 447 (634)
Q Consensus 373 ~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~-~~~~~~~-- 447 (634)
...|++++|...++...+.. +.+...|..+...|...|++++|...|++. .. +.+...|..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN---PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC---CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 44566777777777766531 335667777777777778888777777765 11 2355666667777 6677887
Q ss_pred hHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 448 DIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 448 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
+.|...++++++..|.++..+..++.+|...|++++|.+.++...+.
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 88888888888888888888888888888888888888888888764
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.27 E-value=2.2e-06 Score=81.10 Aligned_cols=133 Identities=11% Similarity=-0.078 Sum_probs=68.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCC--hHHHHHHHHHH
Q 006705 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE--IEHYGCVVDML 409 (634)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~--~~~~~~li~~~ 409 (634)
....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..++
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--P-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--S-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--C-CcccHHHHHHHHHHHH
Confidence 444555566666666666555432 243333333333455566666666666543321 0 111 22455556666
Q ss_pred HHcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHH
Q 006705 410 GRAGRVGEALEFIKNM---PFEPT--AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVIL 471 (634)
Q Consensus 410 ~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 471 (634)
.+.|++++|++.|++. +..|. ...+.....++...|+.++|...++++...+|. ...+..|
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 6666666666666654 11122 224445555666666666666666666666665 4433333
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.25 E-value=4.8e-06 Score=69.15 Aligned_cols=96 Identities=9% Similarity=-0.021 Sum_probs=80.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 006705 399 IEHYGCVVDMLGRAGRVGEALEFIKNM-P-FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYA 476 (634)
Q Consensus 399 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 476 (634)
...+..+...+.+.|++++|+..|++. . .+.+...|..+..++...|++++|...++++++++|+++..|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 456677778888888888888888875 2 23467788888888889999999999999999999999889999999999
Q ss_pred hcCCcHHHHHHHHHHhhC
Q 006705 477 SAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 477 ~~g~~~~A~~~~~~m~~~ 494 (634)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999999988654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.24 E-value=5.1e-05 Score=71.74 Aligned_cols=137 Identities=8% Similarity=-0.016 Sum_probs=100.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC--HHHHHHHHHHH
Q 006705 297 LQNSLIDMYSKCGSLTYSRRVFDNMSE--RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD--SVTYLAVLSGC 372 (634)
Q Consensus 297 ~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd--~~t~~~ll~a~ 372 (634)
+.-.+..++...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+..... ..|. ...+..+-.++
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--PDKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--CCcccHHHHHHHHHHHH
Confidence 344567778889999999999999874 43335666667888999999999999865443 1221 23677788889
Q ss_pred hccCcHHHHHHHHHHhhhccCCccCC--hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 006705 373 SHGGMEDRGLAVFHEIVDCKDGFEPE--IEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTAAILGSL 437 (634)
Q Consensus 373 ~~~g~~~~a~~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 437 (634)
...|++++|+..|++.... ...|. ......+..++.+.|+.++|..+|+++ ...|+...+..|
T Consensus 182 ~~LG~~~eAl~~l~~a~~g--~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~~~~~~aL 247 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDS--PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAAAL 247 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTS--TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcC--CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 9999999999999998753 33253 456777888899999999999999987 334564344333
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=7.2e-07 Score=81.15 Aligned_cols=172 Identities=8% Similarity=-0.087 Sum_probs=99.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccC
Q 006705 300 SLIDMYSKCGSLTYSRRVFDNMSER---TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376 (634)
Q Consensus 300 ~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g 376 (634)
..+......|+++.|.+.|+.-.+. ....|..+...+...|++++|+..|++..+...-.|+....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~----------- 77 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ----------- 77 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH-----------
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh-----------
Confidence 3444455567777777666643321 34566667777778888888888888777641111111000
Q ss_pred cHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCchHHHHHH
Q 006705 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-P-FEPTAAILGSLLGACRVHYNVDIGEFVG 454 (634)
Q Consensus 377 ~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 454 (634)
....-.. ......|..+..+|.+.|++++|+..+++. . .+.+...|..+..++...|+++.|...+
T Consensus 78 -------~~~~~~~-----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~ 145 (198)
T 2fbn_A 78 -------ILLDKKK-----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENL 145 (198)
T ss_dssp -------HHHHHHH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred -------hHHHHHH-----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHH
Confidence 0000000 001356667777788888888888887775 2 1345677888888888899999999999
Q ss_pred HHHhccCCCCCchHHHHHHHHhhcCCcHHHH-HHHHHHhhC
Q 006705 455 QRLMEIEPENAGNYVILSNLYASAGRWEDVT-RVRELMKEK 494 (634)
Q Consensus 455 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~ 494 (634)
++++++.|.+...+..+..++...|+.+++. ..+..|...
T Consensus 146 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 146 YKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999998888889999888888877776 555555443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.21 E-value=5.7e-06 Score=66.57 Aligned_cols=97 Identities=9% Similarity=-0.046 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCC--CCchHHHHHHH
Q 006705 399 IEHYGCVVDMLGRAGRVGEALEFIKNM-P-FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE--NAGNYVILSNL 474 (634)
Q Consensus 399 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 474 (634)
...+..+...+.+.|++++|...+++. . .+.+...|..+...+...|++++|...++++.+..|. +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 445556666677777777777777664 1 1235666777777777788888888888888888888 77888888888
Q ss_pred Hhhc-CCcHHHHHHHHHHhhCC
Q 006705 475 YASA-GRWEDVTRVRELMKEKA 495 (634)
Q Consensus 475 ~~~~-g~~~~A~~~~~~m~~~~ 495 (634)
|... |++++|.+.++......
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 8888 88888888888886653
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.1e-05 Score=71.48 Aligned_cols=126 Identities=9% Similarity=0.063 Sum_probs=91.4
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHH-HHHcCCH
Q 006705 337 SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM-LGRAGRV 415 (634)
Q Consensus 337 ~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~ 415 (634)
...|++++|+..|++..+. .+.+...+..+...+...|++++|...|+...+.. +.+...+..+..+ |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR---GENAELYAALATVLYYQASQH 95 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHTTTC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhcCCc
Confidence 3467778888888887765 23455777777788888888888888888887532 3356677777777 7788887
Q ss_pred --HHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCch
Q 006705 416 --GEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGN 467 (634)
Q Consensus 416 --~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 467 (634)
++|...+++. .. +.+...|..+...+...|+++.|...++++++..|+++..
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 8888888776 22 2356677788888888899999999999999998887543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.19 E-value=9.1e-06 Score=73.70 Aligned_cols=46 Identities=22% Similarity=0.081 Sum_probs=21.6
Q ss_pred cCCHHHHHH---HHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHh
Q 006705 207 AGRIHEARG---VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ 252 (634)
Q Consensus 207 ~g~~~~A~~---~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 252 (634)
.|++++|.+ .+..-+.....+++.+...|...|++++|+..|++..
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 53 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQ 53 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 455555555 3333222233445555555555555555555555544
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.17 E-value=1.2e-05 Score=67.69 Aligned_cols=98 Identities=8% Similarity=-0.053 Sum_probs=82.8
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHH
Q 006705 397 PEIEHYGCVVDMLGRAGRVGEALEFIKNM-P-FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNL 474 (634)
Q Consensus 397 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 474 (634)
.+...+..+...+.+.|++++|...|++. . .+.+...|..+...+...|+++.|...+++++++.|+++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 45777888888888888888888888875 2 234577888888888999999999999999999999999999999999
Q ss_pred HhhcCCcHHHHHHHHHHhhC
Q 006705 475 YASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 475 ~~~~g~~~~A~~~~~~m~~~ 494 (634)
|...|++++|.+.++...+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999988654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.16 E-value=4.3e-05 Score=62.57 Aligned_cols=94 Identities=15% Similarity=0.222 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHH
Q 006705 327 ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV 406 (634)
Q Consensus 327 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li 406 (634)
..|..+...+...|++++|++.|+++.+. .+.+..++..+...+...|++++|..+++.+.+. .+.+...+..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la 84 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLG 84 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHH
Confidence 34555555555666666666666655554 1233445555555556666666666666665542 123445555566
Q ss_pred HHHHHcCCHHHHHHHHHhC
Q 006705 407 DMLGRAGRVGEALEFIKNM 425 (634)
Q Consensus 407 ~~~~~~g~~~~A~~~~~~m 425 (634)
..|.+.|++++|...++++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 85 NAYYKQGDYDEAIEYYQKA 103 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHH
Confidence 6666666666666666554
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.16 E-value=8.3e-06 Score=73.96 Aligned_cols=148 Identities=10% Similarity=-0.061 Sum_probs=74.1
Q ss_pred cCCChHHHHH---HHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHhccCCcH
Q 006705 105 KCECLSDARK---MFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRS----DTEP-NEFTFATVLTSCAGAFGFE 176 (634)
Q Consensus 105 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~ 176 (634)
..|++++|.+ ++..-+.....+|+.+...|...|++++|+..|++.... +..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3456666666 444433334455666666666666666666666665441 1111 1233444455555666666
Q ss_pred HHHHHHHHHHHhC--CC----CchHHHHHHHHHHHhcCCHHHHHHHHccCCC-----CC----hhhHHHHHHHHHhcCCh
Q 006705 177 LGKQIHSLIIKSN--FE----SHIYVGSSLLDMYAKAGRIHEARGVFECLPE-----RD----VVSCTAIISGYAQLGLD 241 (634)
Q Consensus 177 ~a~~~~~~~~~~g--~~----~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~ 241 (634)
+|...+...++.. .+ ....++..+...|...|++++|...|++... .+ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 6666665554430 11 1123455555566666666666655554321 11 11234455555566666
Q ss_pred HHHHHHHHHHh
Q 006705 242 EEAIELFRKLQ 252 (634)
Q Consensus 242 ~~A~~~~~~m~ 252 (634)
++|...+++..
T Consensus 164 ~~A~~~~~~al 174 (203)
T 3gw4_A 164 LEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66665555544
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=5.7e-06 Score=68.27 Aligned_cols=94 Identities=6% Similarity=-0.143 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhc
Q 006705 401 HYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASA 478 (634)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 478 (634)
.+..+...+.+.|++++|...|++. .. +.+...|..+..++...|++++|...++++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556677788899999999988886 22 346778888888999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHhhC
Q 006705 479 GRWEDVTRVRELMKEK 494 (634)
Q Consensus 479 g~~~~A~~~~~~m~~~ 494 (634)
|++++|.+.+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988754
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00019 Score=70.23 Aligned_cols=243 Identities=10% Similarity=0.010 Sum_probs=128.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhh-HHHHHHHHhccc-chHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 006705 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVT-YASVLTALSGLA-ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMY 305 (634)
Q Consensus 228 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~-~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~ 305 (634)
|+.+-......+..++|++++.++... .|+..| ++.--..+...+ .++++..++..+++.. +.+..+|+.-...+
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 344444444556667888888888875 454443 444444455556 4777777777777655 45566666655555
Q ss_pred Hhc-C-CHHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 006705 306 SKC-G-SLTYSRRVFDNMSER---TVISWNAMLVGYSKHGMGR--------EVVELFNLMREENKVKPDSVTYLAVLSGC 372 (634)
Q Consensus 306 ~~~-g-~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~g~~pd~~t~~~ll~a~ 372 (634)
.+. + +++++.++++++.+. |..+|+--.-.+.+.|.++ ++++.++++.+. -.-|...|+.....+
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL 211 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLR 211 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 555 5 666677777666643 4455655544444444444 666666666654 233445555555555
Q ss_pred hccCc-------HHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHH--HHHHHHhC--CCCCCHHHHHHHHHHH
Q 006705 373 SHGGM-------EDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE--ALEFIKNM--PFEPTAAILGSLLGAC 441 (634)
Q Consensus 373 ~~~g~-------~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~--A~~~~~~m--~~~p~~~~~~~ll~~~ 441 (634)
.+.+. ++++++.++.+... -+-|...|+.+-..+.+.|+... -..+.-.- .+.|+
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~----------- 277 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPD----------- 277 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-----------------
T ss_pred HhccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCCccccccccccccccccccc-----------
Confidence 55543 45555555555432 12244445544444444443200 00000000 00000
Q ss_pred HhcCCchHHHHHHHHHhc------cCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 442 RVHYNVDIGEFVGQRLME------IEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 442 ~~~~~~~~a~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
..........+.. ..+.++.+...|+++|...|+.++|.++++.+.++
T Consensus 278 -----~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 278 -----IETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp -------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -----chhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 0011111111111 12445566778999999999999999999999643
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.15 E-value=3.1e-05 Score=67.45 Aligned_cols=87 Identities=11% Similarity=0.024 Sum_probs=38.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCc
Q 006705 301 LIDMYSKCGSLTYSRRVFDNMS---ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377 (634)
Q Consensus 301 li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~ 377 (634)
+...+...|++++|...|++.. ..+...|..+...+...|++++|++.|++..+. .+.+...+..+..++...|+
T Consensus 19 ~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~ 96 (166)
T 1a17_A 19 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGK 96 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcc
Confidence 3344444444444444444332 123344444444444455555555555444443 12233344444444444455
Q ss_pred HHHHHHHHHHhh
Q 006705 378 EDRGLAVFHEIV 389 (634)
Q Consensus 378 ~~~a~~~~~~~~ 389 (634)
+++|...++.+.
T Consensus 97 ~~~A~~~~~~a~ 108 (166)
T 1a17_A 97 FRAALRDYETVV 108 (166)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555554444
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.14 E-value=5.5e-05 Score=73.33 Aligned_cols=124 Identities=10% Similarity=0.011 Sum_probs=72.8
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHhcCChHHHHHHHHHHH---HcCCCCCC--HHHHH
Q 006705 301 LIDMYSKCGSLTYSRRVFDNMSE-----RT----VISWNAMLVGYSKHGMGREVVELFNLMR---EENKVKPD--SVTYL 366 (634)
Q Consensus 301 li~~~~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~g~~pd--~~t~~ 366 (634)
+...|...|++++|...|++..+ .+ ..+|+.+...|...|++++|+..|++.. +..+..+. ..++.
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 44445566666666666655421 11 2366777777777777777777777765 22011111 14666
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhhccC--CccC-ChHHHHHHHHHHHHcCCHHHH-HHHHHh
Q 006705 367 AVLSGCSHGGMEDRGLAVFHEIVDCKD--GFEP-EIEHYGCVVDMLGRAGRVGEA-LEFIKN 424 (634)
Q Consensus 367 ~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~~p-~~~~~~~li~~~~~~g~~~~A-~~~~~~ 424 (634)
.+...|...|++++|..+++...+... +... -..+|..+...|.+.|++++| ...+++
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 677777777777777777777654210 1011 145666777777777777777 554544
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.14 E-value=9.3e-06 Score=71.06 Aligned_cols=97 Identities=8% Similarity=0.025 Sum_probs=68.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHH
Q 006705 398 EIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLY 475 (634)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 475 (634)
+...+..+...|.+.|++++|++.|++. .. +.+...|..+..++...|++++|...++++++++|.++..|..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3455666667777777777777777665 21 235666777777777777777777777777777777777777777777
Q ss_pred hhcCCcHHHHHHHHHHhhC
Q 006705 476 ASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 476 ~~~g~~~~A~~~~~~m~~~ 494 (634)
...|++++|.+.+++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 7777777777777777553
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.14 E-value=1.8e-05 Score=76.22 Aligned_cols=95 Identities=11% Similarity=-0.091 Sum_probs=69.1
Q ss_pred hhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC---CChhhHHHHHHHH
Q 006705 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE---RDVVSCTAIISGY 235 (634)
Q Consensus 159 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~ 235 (634)
...+..+...+...|++++|...+..+++.. +.+...+..+...|.+.|++++|...|++..+ .+...|..+..+|
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3445555566666777777777777776653 44667777788888888888888888877654 3556777888888
Q ss_pred HhcCChHHHHHHHHHHhhc
Q 006705 236 AQLGLDEEAIELFRKLQVE 254 (634)
Q Consensus 236 ~~~g~~~~A~~~~~~m~~~ 254 (634)
...|++++|+..|++..+.
T Consensus 83 ~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 8888888888888887654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=2.9e-05 Score=62.91 Aligned_cols=100 Identities=11% Similarity=-0.060 Sum_probs=42.2
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcC
Q 006705 368 VLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHY 445 (634)
Q Consensus 368 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~ 445 (634)
+...+...|++++|...++...+. .+.+...+..+...|.+.|++++|...+++. .. +.+...|..+..++...|
T Consensus 10 ~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 10 KGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 86 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 333344444444444444444331 1113334444444444444444444444433 11 123334444444444555
Q ss_pred CchHHHHHHHHHhccCCCCCchHHH
Q 006705 446 NVDIGEFVGQRLMEIEPENAGNYVI 470 (634)
Q Consensus 446 ~~~~a~~~~~~~~~~~p~~~~~~~~ 470 (634)
++++|...++++.+..|+++..+..
T Consensus 87 ~~~~A~~~~~~~~~~~~~~~~~~~~ 111 (118)
T 1elw_A 87 RFEEAKRTYEEGLKHEANNPQLKEG 111 (118)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 5555555555555555554443333
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.13 E-value=1.8e-05 Score=68.10 Aligned_cols=95 Identities=6% Similarity=-0.102 Sum_probs=53.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHH
Q 006705 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405 (634)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 405 (634)
...|..+...+.+.|++++|+..|++.... -+-+...|..+..++...|++++|...|+...+.. +.++..|..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~---P~~~~~~~~l 110 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG---KNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---SSCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---CCCcHHHHHH
Confidence 345555555666666666666666666654 12234555555566666666666666666665421 2234555555
Q ss_pred HHHHHHcCCHHHHHHHHHhC
Q 006705 406 VDMLGRAGRVGEALEFIKNM 425 (634)
Q Consensus 406 i~~~~~~g~~~~A~~~~~~m 425 (634)
..+|.+.|++++|...|++.
T Consensus 111 g~~~~~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELV 130 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 55666666666665555553
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.5e-05 Score=66.46 Aligned_cols=99 Identities=7% Similarity=-0.009 Sum_probs=89.0
Q ss_pred cCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHH
Q 006705 396 EPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFE-PTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSN 473 (634)
Q Consensus 396 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 473 (634)
+.+...+..+...+.+.|++++|.+.+++. ... .+...|..+...+...|++++|...++++.+..|.++..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345778899999999999999999999986 333 467888999999999999999999999999999999999999999
Q ss_pred HHhhcCCcHHHHHHHHHHhhC
Q 006705 474 LYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 474 ~~~~~g~~~~A~~~~~~m~~~ 494 (634)
+|.+.|++++|.+.+++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999998754
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=1.6e-05 Score=64.50 Aligned_cols=97 Identities=11% Similarity=0.091 Sum_probs=87.0
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHH
Q 006705 398 EIEHYGCVVDMLGRAGRVGEALEFIKNM-P-FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLY 475 (634)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 475 (634)
....+..+...+...|++++|...+++. . .+.+...|..+...+...|+++.|...++++.+..|.++..+..++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3567788899999999999999999986 2 2347788888999999999999999999999999999999999999999
Q ss_pred hhcCCcHHHHHHHHHHhhC
Q 006705 476 ASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 476 ~~~g~~~~A~~~~~~m~~~ 494 (634)
...|++++|.+.++...+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 9999999999999998764
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=5e-05 Score=62.74 Aligned_cols=115 Identities=12% Similarity=-0.031 Sum_probs=66.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHH
Q 006705 327 ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV 406 (634)
Q Consensus 327 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li 406 (634)
..|..+...+...|++++|++.|++.... .+.+...+..+...+...|++++|...++...+. .+.+...+..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~ 87 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI---DPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---CccCHHHHHHHH
Confidence 34555556666666666666666666554 2234455556666666666666666666666643 122455666666
Q ss_pred HHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCC
Q 006705 407 DMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYN 446 (634)
Q Consensus 407 ~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~ 446 (634)
..|.+.|++++|...+++. .. +.+...+..+..++...|+
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 6666666666666666654 11 2244555555555555444
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.09 E-value=4.5e-05 Score=64.86 Aligned_cols=107 Identities=13% Similarity=-0.039 Sum_probs=51.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCC----hHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHH
Q 006705 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE----IEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSL 437 (634)
Q Consensus 364 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~l 437 (634)
.+..+...+...|++++|...|+...+ ..|+ ...+..+...|.+.|++++|+..+++. .. +.+...|..+
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALG----LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHT----SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH----HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 333344444444444444444444442 1232 344444445555555555555555443 11 1234445555
Q ss_pred HHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHH
Q 006705 438 LGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNL 474 (634)
Q Consensus 438 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 474 (634)
..++...|++++|...+++++++.|++...+..+..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 5555555666666666666666666554444444433
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=5e-06 Score=71.47 Aligned_cols=102 Identities=7% Similarity=-0.113 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 006705 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGA 440 (634)
Q Consensus 363 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~ 440 (634)
..+..+...+...|++++|...|+...... +.+...|..+..+|.+.|++++|++.|++. .. +.+...|..+..+
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD---HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC---cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 344455555666666666666666666431 235566666666666777777777766664 11 2344566666677
Q ss_pred HHhcCCchHHHHHHHHHhccCCCCCch
Q 006705 441 CRVHYNVDIGEFVGQRLMEIEPENAGN 467 (634)
Q Consensus 441 ~~~~~~~~~a~~~~~~~~~~~p~~~~~ 467 (634)
+...|++++|...+++++++.|+++..
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 777777777777777777777765543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=0.0019 Score=63.13 Aligned_cols=177 Identities=12% Similarity=0.035 Sum_probs=128.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCccChhhHHHHHHHHhc
Q 006705 197 GSSLLDMYAKAGRIHEARGVFECLPE---RDVVSCTAIISGYAQLG-LDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272 (634)
Q Consensus 197 ~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 272 (634)
++.+-....+.+..++|+++++.+.. .+..+||.--..+...| .+++++.++..+.... +-+...|+.--..+..
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 33333344455566789999988754 35678888888888888 5999999999999763 2344566666666666
Q ss_pred c-c-chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH--------HHHHHHhhcCC---CChhhHHHHHHHHHhc
Q 006705 273 L-A-ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLT--------YSRRVFDNMSE---RTVISWNAMLVGYSKH 339 (634)
Q Consensus 273 ~-~-~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~f~~m~~---~~~~~~~~li~~~~~~ 339 (634)
. + +++++.+++..+++.. +.|...|+--.-.+.+.|..+ ++.+.++++.+ .|..+|+-....+.+.
T Consensus 136 l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTS
T ss_pred hcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 5 6 7889999999999775 567777776666666666655 88888887764 5778999998888888
Q ss_pred CC-------hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCc
Q 006705 340 GM-------GREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377 (634)
Q Consensus 340 g~-------~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~ 377 (634)
++ ++++++.++++... .+-|...|+.+-..+.+.|.
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred cccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 76 68999999998876 34456667665555555444
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.04 E-value=3.1e-05 Score=65.94 Aligned_cols=98 Identities=14% Similarity=0.074 Sum_probs=89.0
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHH
Q 006705 397 PEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPT----AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVIL 471 (634)
Q Consensus 397 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 471 (634)
.+...+..+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++.+..|+++..+..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 36778889999999999999999999986 55676 67888888999999999999999999999999999999999
Q ss_pred HHHHhhcCCcHHHHHHHHHHhhC
Q 006705 472 SNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 472 ~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
+.+|...|++++|.+.+++..+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999999999999999998764
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.01 E-value=2.1e-05 Score=65.48 Aligned_cols=95 Identities=4% Similarity=-0.103 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCc-------hHH
Q 006705 399 IEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAG-------NYV 469 (634)
Q Consensus 399 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~ 469 (634)
...+..|...|.+.|++++|++.|++. .. +.+...|..+..++...|++++|...+++++++.|++.. +|.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345667788888888888888888875 22 345677888888888999999999999998888877543 566
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 470 ILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 470 ~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
.++.+|...|++++|.+.+++..+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 788889999999999999998765
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.99 E-value=4.6e-05 Score=66.56 Aligned_cols=106 Identities=8% Similarity=-0.081 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHH
Q 006705 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLG 439 (634)
Q Consensus 362 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~ 439 (634)
...+..+...+...|++++|...|+...+.. +.+...|..+...|.+.|++++|+..|++. .. +.+...|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA---PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3455566666777777777777777776531 235667777777777777777777777765 22 235667778888
Q ss_pred HHHhcCCchHHHHHHHHHhccCCCCCchHHH
Q 006705 440 ACRVHYNVDIGEFVGQRLMEIEPENAGNYVI 470 (634)
Q Consensus 440 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 470 (634)
++...|++++|...+++++++.|++...+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 118 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMK 118 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 8888888888888888888888887775543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.98 E-value=2.5e-05 Score=66.40 Aligned_cols=101 Identities=9% Similarity=-0.090 Sum_probs=57.1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHH
Q 006705 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACR 442 (634)
Q Consensus 365 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~ 442 (634)
+..+...+...|++++|...|+...+.. +.+...|..+..+|.+.|++++|+..|++. .. +.+...|..+..++.
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLD---HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3344445555566666666666555421 224555555666666666666666666554 11 223445555666666
Q ss_pred hcCCchHHHHHHHHHhccCCCCCchH
Q 006705 443 VHYNVDIGEFVGQRLMEIEPENAGNY 468 (634)
Q Consensus 443 ~~~~~~~a~~~~~~~~~~~p~~~~~~ 468 (634)
..|++++|...+++++++.|+++...
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~ 123 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHE 123 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchH
Confidence 66666666666667777666655443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.98 E-value=3.7e-05 Score=63.62 Aligned_cols=92 Identities=11% Similarity=-0.018 Sum_probs=43.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHH
Q 006705 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407 (634)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~ 407 (634)
.|..+...+.+.|++++|+..|++..+. .+.+...+..+..++...|++++|...++...+.. +.+...|..+..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~ 80 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD---PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCcHHHHHHHHH
Confidence 3444445555555555555555555543 12233444444555555555555555555554321 112344444444
Q ss_pred HHHHcCCHHHHHHHHHh
Q 006705 408 MLGRAGRVGEALEFIKN 424 (634)
Q Consensus 408 ~~~~~g~~~~A~~~~~~ 424 (634)
+|...|++++|.+.|++
T Consensus 81 ~~~~~~~~~~A~~~~~~ 97 (126)
T 3upv_A 81 AQIAVKEYASALETLDA 97 (126)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHH
Confidence 44444444444444443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.95 E-value=8.8e-05 Score=77.32 Aligned_cols=115 Identities=11% Similarity=0.010 Sum_probs=54.9
Q ss_pred HHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHH
Q 006705 304 MYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDR 380 (634)
Q Consensus 304 ~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~ 380 (634)
.|.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|++.|++..+. -+.+..++..+..++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 34555556666555554431 23455555555555555555555555555543 12233455555555555555555
Q ss_pred HHHHHHHhhhccCCccCChHHHHHHHHH--HHHcCCHHHHHHHHH
Q 006705 381 GLAVFHEIVDCKDGFEPEIEHYGCVVDM--LGRAGRVGEALEFIK 423 (634)
Q Consensus 381 a~~~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 423 (634)
|.+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK---PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS---TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 555555555421 1122233333333 445555555555554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.94 E-value=8.5e-05 Score=59.43 Aligned_cols=98 Identities=12% Similarity=0.014 Sum_probs=55.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CHHHHHHHHH
Q 006705 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEP---TAAILGSLLG 439 (634)
Q Consensus 364 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~ 439 (634)
.+..+...+...|++++|...++...+.. +.+...+..+...|.+.|++++|.+.+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD---PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34444445555555555555555555421 223455555566666666666666666554 1122 3556666666
Q ss_pred HHHhc-CCchHHHHHHHHHhccCCCC
Q 006705 440 ACRVH-YNVDIGEFVGQRLMEIEPEN 464 (634)
Q Consensus 440 ~~~~~-~~~~~a~~~~~~~~~~~p~~ 464 (634)
.+... |++++|...++++.+..|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 66666 67777777777776666654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.91 E-value=2.9e-05 Score=66.24 Aligned_cols=93 Identities=13% Similarity=-0.020 Sum_probs=67.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHhcCCchHHHHHHHHHhcc-------
Q 006705 402 YGCVVDMLGRAGRVGEALEFIKNM-PFEPT-------------AAILGSLLGACRVHYNVDIGEFVGQRLMEI------- 460 (634)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------- 460 (634)
+......+.+.|++++|++.|++. .+.|+ ...|..+..++...|++++|...+++++++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 334445555556666666665554 11121 237777777788888888888888777777
Q ss_pred CCCCCchH----HHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 461 EPENAGNY----VILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 461 ~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
+|++...| ...+.+|...|++++|.+.|++..+.
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99988888 99999999999999999999988653
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.91 E-value=8.3e-05 Score=73.66 Aligned_cols=126 Identities=11% Similarity=-0.044 Sum_probs=91.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-C---------------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006705 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSE--R-T---------------VISWNAMLVGYSKHGMGREVVELFNLMREEN 356 (634)
Q Consensus 295 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 356 (634)
...+..+...|.+.|++++|...|++..+ | + ...|..+..+|.+.|++++|+..|++..+.
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 225 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL- 225 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 44556666667777777777777766542 2 2 467888888888888888888888888876
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHH-HHHHhC
Q 006705 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL-EFIKNM 425 (634)
Q Consensus 357 g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m 425 (634)
-+.+...+..+..++...|++++|...|+.+.+.. +.+...+..+..++.+.|+.++|. .++++|
T Consensus 226 -~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 226 -DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY---PNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23456778888888888888888888888888531 335667778888888888888773 344444
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0013 Score=63.90 Aligned_cols=164 Identities=12% Similarity=-0.014 Sum_probs=79.2
Q ss_pred ChhhHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCc-HHHHHHHHHHhhhccCCccCChHH
Q 006705 325 TVISWNAMLVGYSKHGM--GREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM-EDRGLAVFHEIVDCKDGFEPEIEH 401 (634)
Q Consensus 325 ~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~~p~~~~ 401 (634)
+..+|+.-.-.+.+.|+ ++++++++.++.+. -+-|...|+.-...+...|. ++++++.++.+.+.. +-|...
T Consensus 107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~---p~N~SA 181 (331)
T 3dss_A 107 SYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN---FSNYSS 181 (331)
T ss_dssp CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---SCCHHH
T ss_pred CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC---CCCHHH
Confidence 33444444444444442 44555555555543 12233444433333344444 345555555554421 223444
Q ss_pred HHHHHHHHHHc--------------CCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc-----------CCchHHHHHH
Q 006705 402 YGCVVDMLGRA--------------GRVGEALEFIKNM--PFEPTAAILGSLLGACRVH-----------YNVDIGEFVG 454 (634)
Q Consensus 402 ~~~li~~~~~~--------------g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~-----------~~~~~a~~~~ 454 (634)
|+.....+.+. +.++++++.+.+. ..+-|...|+-+-..+... +.++++...+
T Consensus 182 W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~ 261 (331)
T 3dss_A 182 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESC 261 (331)
T ss_dssp HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHH
Confidence 44444444333 3355566665554 1233555665444443333 2356677777
Q ss_pred HHHhccCCCCCchHHHHHHH---HhhcCCcHHHHHHHHHHhh
Q 006705 455 QRLMEIEPENAGNYVILSNL---YASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 455 ~~~~~~~p~~~~~~~~l~~~---~~~~g~~~~A~~~~~~m~~ 493 (634)
+++++++|++.-.+..++.. ....|..+++...+.++.+
T Consensus 262 ~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 262 KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 78888888764433333222 2235666677777777754
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.90 E-value=7.1e-05 Score=62.17 Aligned_cols=95 Identities=5% Similarity=-0.055 Sum_probs=50.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCC----hHHHH
Q 006705 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE----IEHYG 403 (634)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~----~~~~~ 403 (634)
+|..+...+.+.|++++|++.|++..+. -+-+...|..+..+|...|++++|+..++..++..+...++ ..+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 4445555666666666666666666554 12234555556666666666666666666655321000111 12444
Q ss_pred HHHHHHHHcCCHHHHHHHHHh
Q 006705 404 CVVDMLGRAGRVGEALEFIKN 424 (634)
Q Consensus 404 ~li~~~~~~g~~~~A~~~~~~ 424 (634)
.+...|...|++++|++.|++
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~k 108 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHR 108 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 555555555666666655554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.90 E-value=2e-05 Score=71.43 Aligned_cols=153 Identities=7% Similarity=-0.073 Sum_probs=95.7
Q ss_pred HHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCh----------------h
Q 006705 267 LTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTV----------------I 327 (634)
Q Consensus 267 l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~----------------~ 327 (634)
.......+.++.+.+.+....... ......+..+...+.+.|++++|...|++... .+. .
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp -----------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 344455666666666665332211 12345677788889999999999999998753 232 6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHH
Q 006705 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407 (634)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~ 407 (634)
.|..+..+|.+.|++++|+..+++..+. .+.+...+..+..++...|++++|...|+...+.. +.+...+..+..
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~ 164 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN---PNNLDIRNSYEL 164 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC---CCcHHHHHHHHH
Confidence 7777888888888888888888888875 34456777777788888888888888888877531 235666777777
Q ss_pred HHHHcCCHHHHH-HHHHhC
Q 006705 408 MLGRAGRVGEAL-EFIKNM 425 (634)
Q Consensus 408 ~~~~~g~~~~A~-~~~~~m 425 (634)
++.+.++.+++. ..+..+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 165 CVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 777666666655 334433
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0018 Score=63.00 Aligned_cols=190 Identities=11% Similarity=-0.009 Sum_probs=129.8
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC--CHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCC-hHHHHHHH
Q 006705 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG--SLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGM-GREVVELF 349 (634)
Q Consensus 276 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~-~~~A~~~~ 349 (634)
++++..++..++... +.+..+|+.-.-.+.+.| .++++..+++++.+ +|..+|+--.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 566677777777654 556777777766677777 47888888888763 577788877777777887 48899999
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHhcc--------------CcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHc---
Q 006705 350 NLMREENKVKPDSVTYLAVLSGCSHG--------------GMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA--- 412 (634)
Q Consensus 350 ~~m~~~~g~~pd~~t~~~ll~a~~~~--------------g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--- 412 (634)
.++.+. -+-|...|+.....+.+. +.++++++.+...... -+-|...|+.+-..+.+.
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCG
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCc
Confidence 888886 344556665554444333 4578888888888853 244677787776666665
Q ss_pred --------CCHHHHHHHHHhC-CCCCCHHHHHHHHHH-----HHhcCCchHHHHHHHHHhccCCCCCchHHHHH
Q 006705 413 --------GRVGEALEFIKNM-PFEPTAAILGSLLGA-----CRVHYNVDIGEFVGQRLMEIEPENAGNYVILS 472 (634)
Q Consensus 413 --------g~~~~A~~~~~~m-~~~p~~~~~~~ll~~-----~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 472 (634)
+.++++++.++++ ...||. .|..+-.+ ....+..++....+.++.+++|....-|.-|.
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~ 316 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 316 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 4578888888887 445664 45432222 12356667788899999999998655555443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.89 E-value=8.6e-05 Score=61.35 Aligned_cols=96 Identities=6% Similarity=0.007 Sum_probs=53.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCC----hHHHH
Q 006705 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE----IEHYG 403 (634)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~----~~~~~ 403 (634)
.|..+...+...|++++|+..|++.... .+.+...+..+...+...|++++|...++.+.+..+...++ ...+.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 4555556666666666666666666654 23344555556666666666666666666665431000111 44555
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC
Q 006705 404 CVVDMLGRAGRVGEALEFIKNM 425 (634)
Q Consensus 404 ~li~~~~~~g~~~~A~~~~~~m 425 (634)
.+...|.+.|++++|.+.|++.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~ 105 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKS 105 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHH
Confidence 5566666666666666666554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.87 E-value=6.3e-05 Score=63.09 Aligned_cols=95 Identities=7% Similarity=-0.093 Sum_probs=42.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHH
Q 006705 325 TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404 (634)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 404 (634)
+...|..+...+...|++++|+..|++.... .+.+...+..+..++...|++++|...++...+.. +.+...+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~ 82 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD---GQSVKAHFF 82 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---chhHHHHHH
Confidence 3444444555555555555555555554443 12223444444444444555555555554444321 112334444
Q ss_pred HHHHHHHcCCHHHHHHHHHh
Q 006705 405 VVDMLGRAGRVGEALEFIKN 424 (634)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~ 424 (634)
+...|...|++++|...|++
T Consensus 83 l~~~~~~~~~~~~A~~~~~~ 102 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQR 102 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHH
Confidence 44444444444444444433
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.87 E-value=6.7e-05 Score=77.83 Aligned_cols=143 Identities=11% Similarity=-0.022 Sum_probs=97.0
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHH
Q 006705 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405 (634)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 405 (634)
...|..+...|.+.|++++|+..|++..+. .|+...+ . -+... ... .-....|..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~----------~-~~~~~----~~~------~~~~~~~~nl 323 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW---LEMEYGL----------S-EKESK----ASE------SFLLAAFLNL 323 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HTTCCSC----------C-HHHHH----HHH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccC----------C-hHHHH----HHH------HHHHHHHHHH
Confidence 345666666666666666666666666654 2221100 0 00000 000 0014678888
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHH
Q 006705 406 VDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWED 483 (634)
Q Consensus 406 i~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 483 (634)
..+|.+.|++++|+..+++. .. +.+...|..+..++...|++++|...++++++++|++...+..+..++.+.|++++
T Consensus 324 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 324 AMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999998886 22 34677888899999999999999999999999999999999999999999999988
Q ss_pred HHH-HHHHHh
Q 006705 484 VTR-VRELMK 492 (634)
Q Consensus 484 A~~-~~~~m~ 492 (634)
+.+ .++.|.
T Consensus 404 a~~~~~~~~f 413 (457)
T 1kt0_A 404 RDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 774 445553
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.86 E-value=9.9e-05 Score=75.87 Aligned_cols=166 Identities=9% Similarity=-0.098 Sum_probs=112.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHH----HHHHHHHHHhccCcHHHHHHHHHHhhhccC--CccC-ChH
Q 006705 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV----TYLAVLSGCSHGGMEDRGLAVFHEIVDCKD--GFEP-EIE 400 (634)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~~p-~~~ 400 (634)
++..+...|...|++++|.+.+.++....+..++.. +.+.+-..+...|+++++..++........ +..+ -..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 356677888888888888888877665311122221 222233344567888888888877654210 1122 256
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCC---C----C
Q 006705 401 HYGCVVDMLGRAGRVGEALEFIKNM-------PFEPT-AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE---N----A 465 (634)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~---~----~ 465 (634)
++..|...|...|++++|..++.+. ..+|. ..++..++..|...|+++.|...++++....+. + .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 7788899999999999999988765 11222 346777788899999999999988887764322 1 2
Q ss_pred chHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 466 GNYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 466 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
..+..++..+...|++++|.+.+....+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3466778888899999999888877643
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.86 E-value=3e-05 Score=80.89 Aligned_cols=114 Identities=8% Similarity=-0.009 Sum_probs=52.9
Q ss_pred hccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHH
Q 006705 373 SHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIG 450 (634)
Q Consensus 373 ~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a 450 (634)
...|++++|.+.+++..+.. +.+...|..+..+|.+.|++++|++.+++. .. +.+...|..+..++...|++++|
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELN---PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 34444555555554444321 112444445555555555555555554443 11 12344455555555555555555
Q ss_pred HHHHHHHhccCCCCCchHHHHHHH--HhhcCCcHHHHHHHH
Q 006705 451 EFVGQRLMEIEPENAGNYVILSNL--YASAGRWEDVTRVRE 489 (634)
Q Consensus 451 ~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 489 (634)
...+++++++.|++...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 555555555555555555555444 555555555555544
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.83 E-value=4.8e-05 Score=62.92 Aligned_cols=96 Identities=10% Similarity=0.045 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC-------CchHH
Q 006705 399 IEHYGCVVDMLGRAGRVGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN-------AGNYV 469 (634)
Q Consensus 399 ~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~ 469 (634)
...+..+...+...|++++|...+++. ..+.+...|..+...+...|+++.|...++++.+..|.+ +..+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345666667777777777777777765 113356667777777777788888888887777776655 66788
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 470 ILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 470 ~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
.++.+|...|++++|.+.++...+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999998764
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.80 E-value=5.5e-05 Score=62.71 Aligned_cols=90 Identities=16% Similarity=0.135 Sum_probs=57.8
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC---CchHHHHHHHHh
Q 006705 405 VVDMLGRAGRVGEALEFIKNM-PFEPT-A---AILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN---AGNYVILSNLYA 476 (634)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~m-~~~p~-~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 476 (634)
+...+.+.|++++|.+.|++. ...|+ . ..+..+..++...|++++|...++++.+..|++ +..+..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 445555666666666666654 11122 1 355556666667777777777777777777776 555777777777
Q ss_pred hcCCcHHHHHHHHHHhhC
Q 006705 477 SAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 477 ~~g~~~~A~~~~~~m~~~ 494 (634)
..|++++|.+.++.+.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 777777777777777543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.79 E-value=5.5e-05 Score=65.86 Aligned_cols=64 Identities=8% Similarity=0.041 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 431 AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 431 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
...|..+..++...|+++.|...++++++++|.++.+|..++.+|...|++++|.+.++...+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3567778888899999999999999999999999999999999999999999999999988654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.76 E-value=1.5e-05 Score=65.21 Aligned_cols=81 Identities=15% Similarity=0.066 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHH
Q 006705 413 GRVGEALEFIKNM-PF---EP-TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRV 487 (634)
Q Consensus 413 g~~~~A~~~~~~m-~~---~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 487 (634)
|++++|+..|++. .. .| +...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4445555555443 22 12 2334555555566666666666666666666666666666666666666666666666
Q ss_pred HHHHhh
Q 006705 488 RELMKE 493 (634)
Q Consensus 488 ~~~m~~ 493 (634)
+++..+
T Consensus 84 ~~~al~ 89 (117)
T 3k9i_A 84 LLKIIA 89 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.74 E-value=6.3e-05 Score=74.59 Aligned_cols=147 Identities=10% Similarity=-0.081 Sum_probs=79.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHH
Q 006705 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405 (634)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 405 (634)
...|..+...+.+.|++++|+..|++.... .|+... +...++.+++...+ . ...|..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l---~---------~~~~~nl 236 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAV---K---------NPCHLNI 236 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHH---H---------THHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHH---H---------HHHHHHH
Confidence 445667777778888888888888888765 354432 22334444333211 1 1367778
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHH-hhcCCcH
Q 006705 406 VDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLY-ASAGRWE 482 (634)
Q Consensus 406 i~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 482 (634)
..+|.+.|++++|+..+++. .. +.+...|..+..++...|++++|...++++++++|++...+..|..+. ...+..+
T Consensus 237 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 237 AACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 88888899999998888876 22 346778888888899999999999999999999998888888887774 3456677
Q ss_pred HHHHHHHHHhhC
Q 006705 483 DVTRVRELMKEK 494 (634)
Q Consensus 483 ~A~~~~~~m~~~ 494 (634)
++.+.++.|...
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 788888877544
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0001 Score=63.51 Aligned_cols=93 Identities=17% Similarity=0.096 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCC------CCc
Q 006705 401 HYGCVVDMLGRAGRVGEALEFIKNM----PFEPT----AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE------NAG 466 (634)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------~~~ 466 (634)
.+..+...|...|++++|.+.+++. +..++ ...+..+...+...|++++|...++++.+..+. ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444445555555555555554443 00011 223444455555566666666555555543211 134
Q ss_pred hHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 467 NYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 467 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
.+..++.+|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 567888889999999999998887654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00016 Score=72.54 Aligned_cols=137 Identities=9% Similarity=-0.068 Sum_probs=99.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHH
Q 006705 327 ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV 406 (634)
Q Consensus 327 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li 406 (634)
..|..+...+.+.|++++|++.|++..+. .|+.. .... .....+. -+.+...|..+.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~---~~~~~----------~~~~-------~~~~~~~---~~~~~~~~~nla 280 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY---VEGSR----------AAAE-------DADGAKL---QPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHHH----------HHSC-------HHHHGGG---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hhcCc----------cccC-------hHHHHHH---HHHHHHHHHHHH
Confidence 45666777777888888888888777653 01100 0000 1111110 122456788888
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHH
Q 006705 407 DMLGRAGRVGEALEFIKNM-PFEP-TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDV 484 (634)
Q Consensus 407 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 484 (634)
.+|.+.|++++|++.+++. ...| +...|..+..++...|++++|...+++++++.|++...+..+..++...++.+++
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999886 3334 5778888889999999999999999999999999988888999998888887777
Q ss_pred HH
Q 006705 485 TR 486 (634)
Q Consensus 485 ~~ 486 (634)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00016 Score=59.32 Aligned_cols=93 Identities=10% Similarity=0.024 Sum_probs=45.1
Q ss_pred HHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 006705 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEP-TAAILGSLLGACRVHYN 446 (634)
Q Consensus 369 l~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~ 446 (634)
...+...|++++|...|+...+.. +.+...|..+..++.+.|++++|+..+++. ...| +...|..+..++...|+
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQKE---PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 334445555555555555555321 224445555555555555555555555543 1112 34455555555555566
Q ss_pred chHHHHHHHHHhccCCCC
Q 006705 447 VDIGEFVGQRLMEIEPEN 464 (634)
Q Consensus 447 ~~~a~~~~~~~~~~~p~~ 464 (634)
+++|...++++++.+|.+
T Consensus 101 ~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 101 ANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHhCcCC
Confidence 666666666666665543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00058 Score=70.02 Aligned_cols=121 Identities=11% Similarity=-0.100 Sum_probs=76.0
Q ss_pred HHhcCCHHHHHHHHhhcCC-----C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCCC-HHHHHHHHHH
Q 006705 305 YSKCGSLTYSRRVFDNMSE-----R----TVISWNAMLVGYSKHGMGREVVELFNLMREEN---KVKPD-SVTYLAVLSG 371 (634)
Q Consensus 305 ~~~~g~~~~A~~~f~~m~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---g~~pd-~~t~~~ll~a 371 (634)
+...|+.+.|..++..... . -..++..+...|...|++++|..++++..... +-+|. ..++..+...
T Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (434)
T 4b4t_Q 105 EQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKV 184 (434)
T ss_dssp CSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 3344555555555544321 1 12356677778888888888888887765430 11122 2467777788
Q ss_pred HhccCcHHHHHHHHHHhhhccCCccCC----hHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006705 372 CSHGGMEDRGLAVFHEIVDCKDGFEPE----IEHYGCVVDMLGRAGRVGEALEFIKNM 425 (634)
Q Consensus 372 ~~~~g~~~~a~~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m 425 (634)
|...|++++|..+++......+.+..+ ...+..+...+...|++++|...|.+.
T Consensus 185 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 185 YHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 888999999988888776432112111 345667777778888998888777654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00031 Score=58.01 Aligned_cols=88 Identities=14% Similarity=0.009 Sum_probs=43.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCC---hHHHH
Q 006705 331 AMLVGYSKHGMGREVVELFNLMREENKVKPDS----VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE---IEHYG 403 (634)
Q Consensus 331 ~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~---~~~~~ 403 (634)
.+...+.+.|++++|+..|++..+. .|+. ..+..+..++...|++++|...|+.+.+.. +.+ ...+.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~~~ 80 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY---PTHDKAAGGLL 80 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTSTTHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC---CCCcccHHHHH
Confidence 3444555566666666666655553 1221 244444555555555555555555555431 111 33344
Q ss_pred HHHHHHHHcCCHHHHHHHHHh
Q 006705 404 CVVDMLGRAGRVGEALEFIKN 424 (634)
Q Consensus 404 ~li~~~~~~g~~~~A~~~~~~ 424 (634)
.+...|.+.|++++|...|++
T Consensus 81 ~la~~~~~~g~~~~A~~~~~~ 101 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTLQQ 101 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 444445555555555544444
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.64 E-value=5.7e-05 Score=61.63 Aligned_cols=89 Identities=11% Similarity=0.058 Sum_probs=45.3
Q ss_pred CcHHHHHHHHHHhhhccCC--ccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHH
Q 006705 376 GMEDRGLAVFHEIVDCKDG--FEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGE 451 (634)
Q Consensus 376 g~~~~a~~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~ 451 (634)
|++++|...|+...+. + -+.+...+..+...|.+.|++++|++.|++. .. +.+...+..+..++...|++++|.
T Consensus 4 g~~~~A~~~~~~al~~--~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIAS--GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ---CCCHHHHHHHHSS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CcHHHHHHHHHHHHHc--CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 4455555555555532 1 1223445555555555566666666555554 11 223445555556666666666666
Q ss_pred HHHHHHhccCCCCCc
Q 006705 452 FVGQRLMEIEPENAG 466 (634)
Q Consensus 452 ~~~~~~~~~~p~~~~ 466 (634)
..++++++..|+++.
T Consensus 82 ~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 82 ELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHCCCHH
T ss_pred HHHHHHHHhCCCcHH
Confidence 666666666665543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.002 Score=68.44 Aligned_cols=168 Identities=9% Similarity=-0.058 Sum_probs=130.6
Q ss_pred HHHHHHHHhhcCC---CChhhHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccC-
Q 006705 311 LTYSRRVFDNMSE---RTVISWNAMLVGYSKHGM----------GREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG- 376 (634)
Q Consensus 311 ~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g- 376 (634)
-++|.+.++++.. .+...|+.--..+...|+ ++++++.++++.+. -+-+..+|..-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccc
Confidence 4566777776653 355677776666666666 88999999999886 3446677887777788888
Q ss_pred -cHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcC-CHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhc--------
Q 006705 377 -MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAG-RVGEALEFIKNM-PF-EPTAAILGSLLGACRVH-------- 444 (634)
Q Consensus 377 -~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~-------- 444 (634)
+++++.+.++.+.+.. +-+...|+.-...+.+.| .++++++.++++ .. ..|...|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~d---~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 123 PNWARELELCARFLEAD---ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccHHHHHHHHHHHHhhc---cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 6699999999999752 446778888888888888 899999999887 32 34678888777766653
Q ss_pred ------CCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHH
Q 006705 445 ------YNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWED 483 (634)
Q Consensus 445 ------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 483 (634)
+.++++...+.+++..+|++..+|..+..++.+.|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 446788899999999999999999999999999988555
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00015 Score=61.83 Aligned_cols=69 Identities=13% Similarity=-0.018 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CC-------CCC-HHHH----HHHHHHHHhcCCchHHHHHHHHHhccCCCCCch
Q 006705 401 HYGCVVDMLGRAGRVGEALEFIKNM-PF-------EPT-AAIL----GSLLGACRVHYNVDIGEFVGQRLMEIEPENAGN 467 (634)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~m-~~-------~p~-~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 467 (634)
.|..+..++.+.|++++|+..+++. .+ .|+ ...| .....++...|++++|...+++++++.|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 6777777788888888877777664 33 665 4578 888899999999999999999999999987654
Q ss_pred HH
Q 006705 468 YV 469 (634)
Q Consensus 468 ~~ 469 (634)
+.
T Consensus 139 ~~ 140 (159)
T 2hr2_A 139 TP 140 (159)
T ss_dssp CT
T ss_pred HH
Confidence 43
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00026 Score=60.84 Aligned_cols=97 Identities=11% Similarity=0.009 Sum_probs=46.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhccCCc---cCChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HH
Q 006705 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF---EPEIEHYGCVVDMLGRAGRVGEALEFIKNM----PFEPT----AA 432 (634)
Q Consensus 364 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~ 432 (634)
++..+...+...|++++|...++...+..+.. ......+..+...+...|++++|.+.+++. +..++ ..
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 34444444555555555555555544321000 001334455555555666666665555543 00111 22
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhcc
Q 006705 433 ILGSLLGACRVHYNVDIGEFVGQRLMEI 460 (634)
Q Consensus 433 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 460 (634)
.+..+...+...|++++|...++++.++
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3444555666666666666666655543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00026 Score=73.34 Aligned_cols=124 Identities=10% Similarity=0.039 Sum_probs=87.8
Q ss_pred HhccCcHHHHHHHHHHhhhccCC-ccC----ChHHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCCH-HHHHH
Q 006705 372 CSHGGMEDRGLAVFHEIVDCKDG-FEP----EIEHYGCVVDMLGRAGRVGEALEFIKNM---------PFEPTA-AILGS 436 (634)
Q Consensus 372 ~~~~g~~~~a~~~~~~~~~~~~~-~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~-~~~~~ 436 (634)
+...|++++|..+++...+.... +.| ...+++.|..+|...|++++|..++++. +..|+. .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45667777777777666543211 222 2456777888888888888888777664 233443 35777
Q ss_pred HHHHHHhcCCchHHHHHHHHHhc-----cCCCCCc---hHHHHHHHHhhcCCcHHHHHHHHHHhhCC
Q 006705 437 LLGACRVHYNVDIGEFVGQRLME-----IEPENAG---NYVILSNLYASAGRWEDVTRVRELMKEKA 495 (634)
Q Consensus 437 ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 495 (634)
|...|...|++++|+.+++++++ ++|+.+. ....|..++...|++++|..++.++++.-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888887775 4566543 34578888899999999999999998754
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00025 Score=70.27 Aligned_cols=150 Identities=9% Similarity=-0.023 Sum_probs=74.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 006705 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSE--RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC 372 (634)
Q Consensus 295 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~ 372 (634)
...+..+...|.+.|++++|...|++... |+.. .+...|+.+++...+. ...|..+..++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-------~~~~~~~~~~~~~~l~-----------~~~~~nla~~~ 240 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-------MFQLYGKYQDMALAVK-----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-------HHTCCHHHHHHHHHHH-----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-------hhhhcccHHHHHHHHH-----------HHHHHHHHHHH
Confidence 45577788889999999999999998653 3221 1122233333332211 12566677777
Q ss_pred hccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHH-HHhcCCchH
Q 006705 373 SHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTA-AILGSLLGA-CRVHYNVDI 449 (634)
Q Consensus 373 ~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~-~~~~~~~~~ 449 (634)
.+.|++++|...++...+.. +.+...|..+..+|...|++++|...|++. ...|+. ..+..+... ....+..+.
T Consensus 241 ~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE---EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888777531 335677778888888888888888888776 334433 334433333 233455666
Q ss_pred HHHHHHHHhccCCCCC
Q 006705 450 GEFVGQRLMEIEPENA 465 (634)
Q Consensus 450 a~~~~~~~~~~~p~~~ 465 (634)
+...+.++++..|.++
T Consensus 318 a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 318 QKEMYKGIFKGKDEGG 333 (338)
T ss_dssp ----------------
T ss_pred HHHHHHHhhCCCCCCC
Confidence 7777888887777653
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00014 Score=58.27 Aligned_cols=92 Identities=10% Similarity=-0.092 Sum_probs=68.3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC------CchHH
Q 006705 398 EIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN------AGNYV 469 (634)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 469 (634)
+...+..+...+.+.|++++|.+.|++. .. +.+...|..+..++...|++++|...+++++++.|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4556777777888888888888888775 22 3356777888888888888888888888888888887 55667
Q ss_pred HHHHHHhhcCCcHHHHHHHH
Q 006705 470 ILSNLYASAGRWEDVTRVRE 489 (634)
Q Consensus 470 ~l~~~~~~~g~~~~A~~~~~ 489 (634)
.+..++...|++++|.+.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 77777777777766655443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00022 Score=62.01 Aligned_cols=68 Identities=21% Similarity=0.113 Sum_probs=54.0
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCC
Q 006705 398 EIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENA 465 (634)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 465 (634)
+...|..+..+|.+.|++++|+..+++. .. +.+...|..+..++...|++++|...++++++++|+++
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 3457777888888888888888888775 22 34567788888888889999999999999999988875
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00038 Score=53.25 Aligned_cols=81 Identities=21% Similarity=0.178 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 006705 399 IEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYA 476 (634)
Q Consensus 399 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 476 (634)
...+..+...|.+.|++++|...+++. .. +.+...|..+...+...|++++|...++++.++.|.++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456677777788888888888887765 11 2356677778888888888888888888888888888888888877776
Q ss_pred hcC
Q 006705 477 SAG 479 (634)
Q Consensus 477 ~~g 479 (634)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0004 Score=54.62 Aligned_cols=66 Identities=21% Similarity=0.184 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 429 PTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 429 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
.+...|..+...+...|++++|...++++++++|+++..|..++.+|...|++++|.+.+++..+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 467788888899999999999999999999999999999999999999999999999999988653
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0012 Score=68.28 Aligned_cols=126 Identities=10% Similarity=0.002 Sum_probs=89.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-C---------------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006705 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSE--R-T---------------VISWNAMLVGYSKHGMGREVVELFNLMREEN 356 (634)
Q Consensus 295 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 356 (634)
...+..+...|.+.|++++|...|++..+ | + ...|..+..+|.+.|++++|+..|++..+.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL- 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 34556667777777888888777776542 2 2 467888888888888888888888888875
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHH-HHHhC
Q 006705 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE-FIKNM 425 (634)
Q Consensus 357 g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~-~~~~m 425 (634)
-+.+...+..+..++...|++++|...|+.+.+.. +.+...+..+..++.+.|+.++|.+ ++++|
T Consensus 347 -~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~---P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 347 -DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN---PQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp -STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23456778888888888888888888888887531 2345677778888888888777663 44555
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00027 Score=56.49 Aligned_cols=94 Identities=12% Similarity=0.056 Sum_probs=64.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCC-------
Q 006705 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE------- 398 (634)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~------- 398 (634)
...|..+...+...|++++|++.|++..+. .+.+...+..+..++...|++++|...++...+. .|+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~ 77 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY----TSTAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----CSSTTSHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCccHHHHH
Confidence 445666777778888888888888887765 2345567777777788888888888888887743 443
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006705 399 IEHYGCVVDMLGRAGRVGEALEFIKNM 425 (634)
Q Consensus 399 ~~~~~~li~~~~~~g~~~~A~~~~~~m 425 (634)
...+..+..++...|+.++|.+.++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 445556666666666666666555554
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00042 Score=56.04 Aligned_cols=76 Identities=12% Similarity=0.037 Sum_probs=58.6
Q ss_pred HHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 418 ALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 418 A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
|++.|++. .. +.+...|..+...+...|++++|...++++++.+|.++..|..++.+|...|++++|.+.++...+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444443 22 235667777778888888888888888888888888888888899999999999999998888765
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0012 Score=65.99 Aligned_cols=91 Identities=8% Similarity=-0.087 Sum_probs=55.8
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHH
Q 006705 325 TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404 (634)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 404 (634)
+...|..+..+|.+.|++++|++.+++..+. -+.+...+..+..++...|++++|...|+...+.. +.+...+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~---P~~~~~~~~ 346 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA---PEDKAIQAE 346 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCHHHHHH
Confidence 3456666666777777777777777776654 12244566666666777777777777777766431 224555566
Q ss_pred HHHHHHHcCCHHHHHH
Q 006705 405 VVDMLGRAGRVGEALE 420 (634)
Q Consensus 405 li~~~~~~g~~~~A~~ 420 (634)
+..++.+.++.+++.+
T Consensus 347 l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 347 LLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666555543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00027 Score=60.11 Aligned_cols=84 Identities=13% Similarity=0.025 Sum_probs=59.9
Q ss_pred HcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCC----------chHHHHHHHHHhccCCCCCchHHHHHHHHhhc
Q 006705 411 RAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYN----------VDIGEFVGQRLMEIEPENAGNYVILSNLYASA 478 (634)
Q Consensus 411 ~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 478 (634)
|.+++++|.+.+++. .. +.+...|..+..++...++ +++|+..++++++++|++..+|..++++|.+.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 334455555555443 11 2244445444444444443 56999999999999999999999999999987
Q ss_pred C-----------CcHHHHHHHHHHhhC
Q 006705 479 G-----------RWEDVTRVRELMKEK 494 (634)
Q Consensus 479 g-----------~~~~A~~~~~~m~~~ 494 (634)
| ++++|.+.|++..+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh
Confidence 5 899999999999765
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0023 Score=66.29 Aligned_cols=64 Identities=6% Similarity=-0.100 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 006705 327 ISWNAMLVGYSKHGMGREVVELFNLMRE-----ENKVKPDS-VTYLAVLSGCSHGGMEDRGLAVFHEIVD 390 (634)
Q Consensus 327 ~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 390 (634)
.+++.|...|...|++++|+.++++..+ .|.-.|+. .+...+-.++...+.+++|..++..+.+
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666555432 11123333 3334444556677777777777777765
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0024 Score=49.21 Aligned_cols=69 Identities=14% Similarity=0.117 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHHHhcCC---chHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCCC
Q 006705 428 EPTAAILGSLLGACRVHYN---VDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496 (634)
Q Consensus 428 ~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 496 (634)
++|...|..+..++...++ .++|...++++++++|+++.+...++..+.+.|++++|...++.+.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4567777777777765554 68999999999999999999999999999999999999999999987643
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0059 Score=51.15 Aligned_cols=75 Identities=4% Similarity=-0.034 Sum_probs=44.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHH----cCCH
Q 006705 340 GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR----AGRV 415 (634)
Q Consensus 340 g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~ 415 (634)
+++++|++.|++..+. | .|+.. +-..|...+.+++|.++|+...+. | +...+..|..+|.. .+++
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g---~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQYLSKACEL--N---SGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--T---CHHHHHHHHHHHHHCSSSCCCH
T ss_pred cCHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--C---CHHHHHHHHHHHHcCCCCCccH
Confidence 3566777777777666 4 33333 445555666666677777766653 2 45566666666665 5566
Q ss_pred HHHHHHHHhC
Q 006705 416 GEALEFIKNM 425 (634)
Q Consensus 416 ~~A~~~~~~m 425 (634)
++|.+.|++.
T Consensus 78 ~~A~~~~~~A 87 (138)
T 1klx_A 78 RKAAQYYSKA 87 (138)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.011 Score=62.78 Aligned_cols=150 Identities=11% Similarity=-0.031 Sum_probs=119.3
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHhccCc----------HHHHHHHHHHhhhccCCccCChHHHHHHHH
Q 006705 339 HGMGREVVELFNLMREENKVKPDS-VTYLAVLSGCSHGGM----------EDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407 (634)
Q Consensus 339 ~g~~~~A~~~~~~m~~~~g~~pd~-~t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~~p~~~~~~~li~ 407 (634)
....++|++.++++... .|+. ..|+.--.++...|+ +++++..++.+.+.. +-+..+|+.-.-
T Consensus 42 ~~~~eeal~~~~~~l~~---nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~---pK~y~aW~hR~w 115 (567)
T 1dce_A 42 GELDESVLELTSQILGA---NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN---PKSYGTWHHRCW 115 (567)
T ss_dssp TCCSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH---CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC---CCCHHHHHHHHH
Confidence 34457889999999986 4554 555555455555555 899999999999752 457788888888
Q ss_pred HHHHcC--CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcC-CchHHHHHHHHHhccCCCCCchHHHHHHHHhhc----
Q 006705 408 MLGRAG--RVGEALEFIKNM--PFEPTAAILGSLLGACRVHY-NVDIGEFVGQRLMEIEPENAGNYVILSNLYASA---- 478 (634)
Q Consensus 408 ~~~~~g--~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---- 478 (634)
.+.+.| ++++++++++++ ..+.|...|+.-..+....| .++++...++++++.+|.|..+|.....++.+.
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred HHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccc
Confidence 888999 779999999998 22458889998888888888 889999999999999999999999888887764
Q ss_pred ----------CCcHHHHHHHHHHhhC
Q 006705 479 ----------GRWEDVTRVRELMKEK 494 (634)
Q Consensus 479 ----------g~~~~A~~~~~~m~~~ 494 (634)
+.++++.+.++.....
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHHHHhh
Confidence 5578888888877654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0015 Score=66.53 Aligned_cols=89 Identities=17% Similarity=0.233 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhc-----cCCCC---CchHHHHHHHHhhcCCcHHHHHHHHHHhhCCCccCCceeE
Q 006705 433 ILGSLLGACRVHYNVDIGEFVGQRLME-----IEPEN---AGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSW 504 (634)
Q Consensus 433 ~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~ 504 (634)
+++.|..+|...|++++|+.+++++++ +.|++ ..+++.|+.+|..+|++++|..++++..+--.
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~-------- 402 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMR-------- 402 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--------
Confidence 445555555556666666555555543 23333 34678899999999999999999998854211
Q ss_pred EEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 006705 505 IELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539 (634)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 539 (634)
..-...||...++...+.+...+|+
T Consensus 403 ----------~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 403 ----------VTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp ----------HHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred ----------HhcCCCChHHHHHHHHHHHHHHHHh
Confidence 1123579999888777777776664
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.075 Score=42.85 Aligned_cols=141 Identities=13% Similarity=0.047 Sum_probs=100.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCH
Q 006705 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415 (634)
Q Consensus 336 ~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 415 (634)
+.-.|..++..++..+.... .+..-|+-++.-....-+-+-..++++.+-+-+ .+ ..||++
T Consensus 17 ~ildG~v~qGveii~k~~~s----sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF-Di--------------s~C~Nl 77 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS----STKSEYNWFICNLLESIDCRYMFQVLDKIGSYF-DL--------------DKCQNL 77 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH----SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS-CG--------------GGCSCT
T ss_pred HHHhhhHHHHHHHHHHHcCC----CCccccceeeeecchhhchhHHHHHHHHHhhhc-Cc--------------HhhhcH
Confidence 34457777777877777665 244445555544444445555566666665432 22 246777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCC
Q 006705 416 GEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495 (634)
Q Consensus 416 ~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 495 (634)
......+-.+. .+......-+......|..++-..+...++.-+|.+++...-++++|.+.|+..+|.+++++..++|
T Consensus 78 KrVi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 78 KSVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 77777777764 3455566777888899999999999988766666678999999999999999999999999999999
Q ss_pred Cc
Q 006705 496 VT 497 (634)
Q Consensus 496 ~~ 497 (634)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 85
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.023 Score=47.49 Aligned_cols=112 Identities=4% Similarity=-0.092 Sum_probs=78.1
Q ss_pred CcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCchHHH
Q 006705 376 GMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRV----HYNVDIGE 451 (634)
Q Consensus 376 g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~ 451 (634)
+++++|..+|+...+. + .|.. . |..+|...+.+++|.+.|++.-...+...+..|...|.. .++.++|.
T Consensus 9 ~d~~~A~~~~~~aa~~--g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL--N-EMFG--C--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHT--T-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHcC--C-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4567777777777764 4 2222 2 666777777777788887776333566677777777766 67778888
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHhh----cCCcHHHHHHHHHHhhCCC
Q 006705 452 FVGQRLMEIEPENAGNYVILSNLYAS----AGRWEDVTRVRELMKEKAV 496 (634)
Q Consensus 452 ~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 496 (634)
..++++.+.. ++..+..|..+|.. .+++++|.+.+++..+.|.
T Consensus 82 ~~~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCC--CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 8877777653 45677777888777 6788888888887777664
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.013 Score=44.19 Aligned_cols=79 Identities=13% Similarity=0.164 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHH
Q 006705 327 ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV 406 (634)
Q Consensus 327 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li 406 (634)
..|..+...+...|++++|+..|++..+. .+.+...+..+..++...|++++|...++...+.. +.+...+..+.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---p~~~~~~~~l~ 84 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCCHHHHHHHH
Confidence 34455555555666666666666665554 12234455555555666666666666666655421 22344444444
Q ss_pred HHHH
Q 006705 407 DMLG 410 (634)
Q Consensus 407 ~~~~ 410 (634)
..+.
T Consensus 85 ~~~~ 88 (91)
T 1na3_A 85 NAKQ 88 (91)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0047 Score=49.65 Aligned_cols=65 Identities=6% Similarity=-0.090 Sum_probs=33.3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCC
Q 006705 398 EIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEP 462 (634)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 462 (634)
+...+..+...|.+.|++++|+..|++. .. +.+...|..+..++...|++++|...++++.++.|
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 3444555555555555555555555543 11 12344555555555555555555555555555544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0077 Score=47.05 Aligned_cols=64 Identities=14% Similarity=0.098 Sum_probs=35.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 006705 325 TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390 (634)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 390 (634)
+...|..+...|.+.|++++|+..|++..+. -+.+...|..+..++...|++++|...|+...+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445555555666666666666666665554 122334555555556666666666666655553
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0024 Score=54.30 Aligned_cols=49 Identities=18% Similarity=0.247 Sum_probs=31.5
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CCchHHHHHHHHHhccCCCCC
Q 006705 417 EALEFIKNM-PFEP-TAAILGSLLGACRVH-----------YNVDIGEFVGQRLMEIEPENA 465 (634)
Q Consensus 417 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~p~~~ 465 (634)
+|+..|++. .+.| +...|..+..+|... |++++|...++++++++|++.
T Consensus 64 eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 64 EAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 555555443 2222 334455555555544 589999999999999999863
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.21 Score=55.41 Aligned_cols=167 Identities=14% Similarity=0.052 Sum_probs=104.9
Q ss_pred HHHHhCCChhHHHH-HHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCH
Q 006705 132 SAYSQKAHSFEALN-LFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRI 210 (634)
Q Consensus 132 ~~~~~~g~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 210 (634)
......+++++|.+ ++..+ |+......++..+.+.|..+.|.++.+ +.. .-......+|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~~---~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISP---------DQD---QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCC---------CHH---HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCC---------Ccc---hheehhhhcCCH
Confidence 33445677777766 44211 112223556666677777777765542 111 123455678999
Q ss_pred HHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcC
Q 006705 211 HEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE 290 (634)
Q Consensus 211 ~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~ 290 (634)
++|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...++.+....+-+.....|
T Consensus 669 ~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 669 TLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999987774 567899999999999999999999998864 3344444555666666555555555444
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 006705 291 IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNL 351 (634)
Q Consensus 291 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 351 (634)
-++.-...|.++|++++|.+++ .+.+++++|..+-+.
T Consensus 738 ------~~~~A~~~~~~~g~~~~a~~~~------------------~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 738 ------KFNLAFNAYWIAGDIQGAKDLL------------------IKSQRFSEAAFLGST 774 (814)
T ss_dssp ------CHHHHHHHHHHHTCHHHHHHHH------------------HHTTCHHHHHHHHHH
T ss_pred ------chHHHHHHHHHcCCHHHHHHHH------------------HHcCChHHHHHHHHH
Confidence 1233444566677777776664 445666666665543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.062 Score=52.46 Aligned_cols=137 Identities=10% Similarity=-0.078 Sum_probs=68.0
Q ss_pred CCChhhHHHHHHHHHh--cC---ChHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHhc----cC----cHHHHHHHHHHh
Q 006705 323 ERTVISWNAMLVGYSK--HG---MGREVVELFNLMREENKVKPDS-VTYLAVLSGCSH----GG----MEDRGLAVFHEI 388 (634)
Q Consensus 323 ~~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~~g~~pd~-~t~~~ll~a~~~----~g----~~~~a~~~~~~~ 388 (634)
..+...|...+.+... .+ ...+|..+|++..+. .|+. ..+..+.-++.. .+ ........+...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 3467777777766432 23 347888999988875 5653 344433333320 00 001111111111
Q ss_pred hhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCC
Q 006705 389 VDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE 463 (634)
Q Consensus 389 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 463 (634)
.... ..+.+..+|..+...+...|++++|...++++ ...|+...|..+...+...|+.++|...+++++.++|.
T Consensus 268 ~a~~-~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 268 VTLP-ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp HTCG-GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred Hhcc-cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 1100 12334555555555555556666666655554 22355545544455555556666666666666666555
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.00094 Score=66.48 Aligned_cols=238 Identities=8% Similarity=0.003 Sum_probs=153.3
Q ss_pred ChhHHHHHHHHHHcCCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 006705 92 PVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171 (634)
Q Consensus 92 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 171 (634)
.+.+|+.|..++.+.+.+.+|..-|- ...|+..|..+|.+..+.|.+++-+..+...++..-.| ..=+.++-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHh
Confidence 45677777777777777777766553 33566667788888888888888777776655543333 334467777787
Q ss_pred cCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC------------------------CChhh
Q 006705 172 AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE------------------------RDVVS 227 (634)
Q Consensus 172 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~------------------------~~~~~ 227 (634)
.+++.+-++++ -.|+..-...+.+-|...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 77766544332 134444445566777777777777777766542 36678
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 006705 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSK 307 (634)
Q Consensus 228 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~ 307 (634)
|-.+-.+|...+.+.-|.-.--.+. +.||. ...++..|...|.+++-..+++...... .....+++-|.-.|+|
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniI---vhade--L~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsK 275 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIV---VHADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 275 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHH---CCSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCchHHHHHHHhcchhc---ccHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHh
Confidence 9999889998888876654433333 12222 2345556777788887777777665322 3467778888888887
Q ss_pred cCCHHHHHHHHhhcCC----C-------ChhhHHHHHHHHHhcCChHHHHH
Q 006705 308 CGSLTYSRRVFDNMSE----R-------TVISWNAMLVGYSKHGMGREVVE 347 (634)
Q Consensus 308 ~g~~~~A~~~f~~m~~----~-------~~~~~~~li~~~~~~g~~~~A~~ 347 (634)
- ++++-.+.++.... | ....|.-++-.|.+-..++.|..
T Consensus 276 Y-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 276 F-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp S-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred c-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 5 44454444443322 2 45678888888888888887653
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0034 Score=63.86 Aligned_cols=61 Identities=13% Similarity=0.157 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhc-----cCCCC---CchHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 433 ILGSLLGACRVHYNVDIGEFVGQRLME-----IEPEN---AGNYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 433 ~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
+++.|..+|...|++++|+.+++++++ ++|+. ..+|+.|+.+|..+|++++|..++++..+
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 344444444444555544444444442 23333 35678899999999999999999998754
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.17 Score=56.32 Aligned_cols=46 Identities=22% Similarity=0.240 Sum_probs=26.0
Q ss_pred HHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 006705 305 YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLM 352 (634)
Q Consensus 305 ~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 352 (634)
...+|+++.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++
T Consensus 662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344555666655554442 3355666666666666666666666655
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.032 Score=56.71 Aligned_cols=95 Identities=12% Similarity=0.003 Sum_probs=53.0
Q ss_pred HhccCcHHHHHHHHHHhhhccCC-ccC----ChHHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCCH-HHHHH
Q 006705 372 CSHGGMEDRGLAVFHEIVDCKDG-FEP----EIEHYGCVVDMLGRAGRVGEALEFIKNM---------PFEPTA-AILGS 436 (634)
Q Consensus 372 ~~~~g~~~~a~~~~~~~~~~~~~-~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~-~~~~~ 436 (634)
+...|++++|..+++...+.... +.| ...+++.|...|...|++++|+.++++. +..|+. .+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 34455666666666555533111 122 1345666666666666666666666554 223332 34666
Q ss_pred HHHHHHhcCCchHHHHHHHHHhc-----cCCCCCc
Q 006705 437 LLGACRVHYNVDIGEFVGQRLME-----IEPENAG 466 (634)
Q Consensus 437 ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~ 466 (634)
|...|...|++++|+.+++++++ ++|+.+.
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~ 411 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSL 411 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChH
Confidence 66777777777777777666664 3565443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.022 Score=57.85 Aligned_cols=85 Identities=11% Similarity=-0.035 Sum_probs=52.6
Q ss_pred cCcHHHHHHHHHHhhhccC-CccCC----hHHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCCH-HHHHHHHH
Q 006705 375 GGMEDRGLAVFHEIVDCKD-GFEPE----IEHYGCVVDMLGRAGRVGEALEFIKNM---------PFEPTA-AILGSLLG 439 (634)
Q Consensus 375 ~g~~~~a~~~~~~~~~~~~-~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~-~~~~~ll~ 439 (634)
.|++++|..++++..+... -+.|+ ..+++.|..+|...|++++|+.++++. +..|+. .+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4566666666665544210 12222 456677777777777777777776654 233443 35677777
Q ss_pred HHHhcCCchHHHHHHHHHhc
Q 006705 440 ACRVHYNVDIGEFVGQRLME 459 (634)
Q Consensus 440 ~~~~~~~~~~a~~~~~~~~~ 459 (634)
.|...|++++|+.+++++++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 77788888888777777665
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.02 Score=44.26 Aligned_cols=64 Identities=16% Similarity=0.089 Sum_probs=46.6
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCC-CCHH-HHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchH
Q 006705 405 VVDMLGRAGRVGEALEFIKNM-PFE-PTAA-ILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468 (634)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~m-~~~-p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 468 (634)
....+.+.|++++|.+.+++. ... .+.. .|..+..++...|++++|...++++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 345666778888888887765 222 3455 777777788888888888888888888888876655
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.99 E-value=0.01 Score=59.24 Aligned_cols=400 Identities=11% Similarity=0.037 Sum_probs=218.5
Q ss_pred CCCChhhHHHhhhcCcHHHHHH--HHHHcCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 006705 26 FPPNPQNLKTLCSNGQLTKALI--EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103 (634)
Q Consensus 26 ~~~~~~~i~~~~~~~~~~~~~~--~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 103 (634)
...|..+|.+..+.|...++.. .|.+...+ ++..=+.|+-+|++.+++.+-.+... .|+..-...+.+-+
T Consensus 83 ps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k-e~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrc 154 (624)
T 3lvg_A 83 PSSYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRC 154 (624)
T ss_dssp CCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC-STTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-ccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHH
Confidence 3456677777777777776643 44433322 33444667777887777654333221 34554455566666
Q ss_pred HcCCChHHHHHHHhhcCC------------------------CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh
Q 006705 104 NKCECLSDARKMFDEMRE------------------------RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNE 159 (634)
Q Consensus 104 ~~~g~~~~A~~~~~~~~~------------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 159 (634)
...|.++.|.-+|..++. .++.||-.+-.+|...+.+.-|--.--.+.- .||
T Consensus 155 f~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had- 230 (624)
T 3lvg_A 155 YDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD- 230 (624)
T ss_dssp HHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS-
T ss_pred HHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH-
Confidence 666667666666666542 4677888888888888888776555444432 222
Q ss_pred hhHHHHHHHHhccCCcHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHhcCCHHHHHHHHcc----CCCC-------Chhh
Q 006705 160 FTFATVLTSCAGAFGFELGKQIHSLIIKSNF-ESHIYVGSSLLDMYAKAGRIHEARGVFEC----LPER-------DVVS 227 (634)
Q Consensus 160 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~----m~~~-------~~~~ 227 (634)
-...++..|-..|.+++-..+++..+ |+ .....+++-|.-.|+|-. .++..+.++. +--| ....
T Consensus 231 -eL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahL 306 (624)
T 3lvg_A 231 -ELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHL 306 (624)
T ss_dssp -CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTC
T ss_pred -HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 23345566777888888777777665 32 345677888888888873 4444444332 2222 4457
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHH-------
Q 006705 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS------- 300 (634)
Q Consensus 228 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~------- 300 (634)
|.-++-.|.+-.+++.|... |.+. +|+..--........+..+.+---+.....++. .+...+-
T Consensus 307 W~ElvfLY~~ydE~DnA~lt---Mi~h--~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e----~P~lL~DLL~vL~p 377 (624)
T 3lvg_A 307 WAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF----KPLLLNDLLMVLSP 377 (624)
T ss_dssp HHHHHHHHHHHTCHHHHHHT---TTSC--HHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTS----CCTTSHHHHHHHCT
T ss_pred HHHHHHHHhcchhHHHHHHH---HHhC--ChhhccHHHHHHHHHHcchHHHHHHHHHHHHHh----ChHHHHHHHHhccc
Confidence 88888888888888877532 2221 111111111112222233322222222222211 1111222
Q ss_pred ------HHHHHHhcCCHHHHHHHHhhcCCCChhhHH-HHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Q 006705 301 ------LIDMYSKCGSLTYSRRVFDNMSERTVISWN-AMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373 (634)
Q Consensus 301 ------li~~~~~~g~~~~A~~~f~~m~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~ 373 (634)
.++++.|.|++......+......|...-| ++-..|....+++ +...-+.+|-
T Consensus 378 rlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~--------------------~LR~SId~yd 437 (624)
T 3lvg_A 378 RLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQ--------------------ALRTSIDAYD 437 (624)
T ss_dssp TCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCH--------------------HHHHTTSSCC
T ss_pred cCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHH--------------------HHHHHHHHhc
Confidence 344455555555555555555555544433 3333444444443 2222233333
Q ss_pred ccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHH
Q 006705 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFV 453 (634)
Q Consensus 374 ~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 453 (634)
+-..+..|.++ .+ .+-.+.-..-...|.+.+++++++++.++=..-.| .+...+..++.+.++.+
T Consensus 438 NFD~i~LA~rL----Ek-----HeL~eFRrIAA~LYkkn~rw~qsi~l~KkDklykD------AietAa~S~~~elaeeL 502 (624)
T 3lvg_A 438 NFDNISLAQRL----EK-----HELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKD------AMQYASESKDTELAEEL 502 (624)
T ss_dssp CSCTTHHHHHH----HT-----CSSHHHHHHHHHHHHTTCHHHHHSSCSSTTCCTTG------GGTTTTTCCCTTHHHHH
T ss_pred cccHHHHHHHH----hh-----CchHHHHHHHHHHHHhcccHHHHHHHHHhcccHHH------HHHHHHHcCCHHHHHHH
Confidence 33344433332 21 11233333445667889999999887765432222 33445667788888877
Q ss_pred HHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHH
Q 006705 454 GQRLMEIEPENAGNYVILSNLYASAGRWEDVTRV 487 (634)
Q Consensus 454 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 487 (634)
++-..+.+- ...|...+..|...=+.+-+.++
T Consensus 503 L~yFv~~g~--~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 503 LQWFLQEEK--RECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp HHHHHHHCS--THHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHHHHcCc--hHHHHHHHHHHhhccChHHHHHH
Confidence 777666543 35677776777776677766654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.015 Score=44.89 Aligned_cols=58 Identities=14% Similarity=0.244 Sum_probs=53.1
Q ss_pred HHHHHHhcCCchHHHHHHHHHhccCCCCCc-hHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 437 LLGACRVHYNVDIGEFVGQRLMEIEPENAG-NYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 437 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
....+...|+++.|...++++.+..|.++. .+..++.+|...|++++|.+.+++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 345677889999999999999999999998 9999999999999999999999999765
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.38 E-value=0.28 Score=47.88 Aligned_cols=62 Identities=13% Similarity=0.081 Sum_probs=31.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhh
Q 006705 325 TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389 (634)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 389 (634)
+...|.++...+...|++++|+..++++... + |+...|..+...+.-.|++++|.+.++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~L-n--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDL-E--MSWLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-C--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444444444444445555555555555554 2 444444444444455555555555555554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.03 E-value=1.3 Score=38.12 Aligned_cols=102 Identities=11% Similarity=0.030 Sum_probs=57.2
Q ss_pred HHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHH
Q 006705 203 MYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQV 282 (634)
Q Consensus 203 ~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i 282 (634)
....+|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+.-..+
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345677777777776655 3566777777777777777777777766653 22333334444555444444
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 006705 283 HSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM 321 (634)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m 321 (634)
-+.....| -+|.-...+.-.|+++++.++|.+.
T Consensus 83 a~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 83 QNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 44333333 1233333344456666666665544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.78 E-value=1.1 Score=38.41 Aligned_cols=129 Identities=9% Similarity=0.031 Sum_probs=86.6
Q ss_pred HHHHcCCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHH
Q 006705 101 VFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180 (634)
Q Consensus 101 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 180 (634)
.....+|+++.|.++.+++ .+...|..|.....+.|+++-|.+.|..... |..++-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445789999999988876 4567899999999999999999999988743 4445555666777777666
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 006705 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL 251 (634)
Q Consensus 181 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 251 (634)
+-+.....| . +|.-...+.-.|+++++.++|.+...-.. -+......|..+.|.++..++
T Consensus 82 la~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~~r~~e-----A~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEGGSLPL-----AYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHTTCHHH-----HHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHCCChHH-----HHHHHHHcCcHHHHHHHHHHh
Confidence 666555554 1 23344456667889998888876654211 111112245566677776655
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.088 Score=49.28 Aligned_cols=85 Identities=7% Similarity=0.041 Sum_probs=63.2
Q ss_pred HHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCchHHHHHHHHHhccCCC-CCchHHHHHHHHhhc-CCcHHH
Q 006705 416 GEALEFIKNM-PFEPT---AAILGSLLGACRV-----HYNVDIGEFVGQRLMEIEPE-NAGNYVILSNLYASA-GRWEDV 484 (634)
Q Consensus 416 ~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~-g~~~~A 484 (634)
.+|..++++. .+.|+ ...|..|...|.. .|+.+.|+..+++++++.|+ +..+++..++.|+.. |+.+++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 3444444443 23444 4566666666666 58999999999999999997 489999999999885 999999
Q ss_pred HHHHHHHhhCCCccCC
Q 006705 485 TRVRELMKEKAVTKDP 500 (634)
Q Consensus 485 ~~~~~~m~~~~~~~~~ 500 (634)
.+.+++........+|
T Consensus 260 ~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 260 DEALDRALAIDPESVP 275 (301)
T ss_dssp HHHHHHHHHCCGGGCS
T ss_pred HHHHHHHHcCCCCCCC
Confidence 9999999876555334
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.38 E-value=0.2 Score=41.95 Aligned_cols=65 Identities=8% Similarity=-0.057 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHhcC---CchHHHHHHHHHhccC-C-CCCchHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 429 PTAAILGSLLGACRVHY---NVDIGEFVGQRLMEIE-P-ENAGNYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 429 p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
++..+.-.+..++.+.+ +.++|..+++.+.+.+ | .+...+..|+-+|.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34444444444454444 3345555555555555 4 2345556666666677777777777666654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.14 E-value=0.11 Score=43.52 Aligned_cols=70 Identities=11% Similarity=-0.001 Sum_probs=43.9
Q ss_pred CChHHHHHHHHHHHHcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCc
Q 006705 397 PEIEHYGCVVDMLGRAG---RVGEALEFIKNM-PFE-P--TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAG 466 (634)
Q Consensus 397 p~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 466 (634)
++..+.-.+.-++.+++ ++++++.++++. ... | +...+-.|.-+|.+.|+++.|.+.++.+++++|++..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 45555555555555555 444555555544 111 3 2344555666778888888888888889999998643
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.06 E-value=0.34 Score=36.86 Aligned_cols=67 Identities=9% Similarity=0.022 Sum_probs=37.6
Q ss_pred CChHHHHHHHHHHHHcCC---HHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCC
Q 006705 397 PEIEHYGCVVDMLGRAGR---VGEALEFIKNM-PFE-PTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE 463 (634)
Q Consensus 397 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 463 (634)
+++..+..+..++...++ .++|..++++. ... .++..+..+...+...|++++|...++++++.+|+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 345555555555543333 46666666654 222 23444555556666666666666666666666666
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.03 E-value=0.21 Score=39.05 Aligned_cols=70 Identities=13% Similarity=0.092 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchH
Q 006705 399 IEHYGCVVDMLGRAGRVGEALEFIKNM-----P----FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468 (634)
Q Consensus 399 ~~~~~~li~~~~~~g~~~~A~~~~~~m-----~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 468 (634)
..-+-.|...+.+.|+++.|...++.. + -.+...++..|..++.+.|+++.|...+++++++.|+++.+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 344455666666666666666666553 0 113455677777888888888888888888888888875543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.35 E-value=0.28 Score=52.94 Aligned_cols=54 Identities=9% Similarity=-0.001 Sum_probs=50.8
Q ss_pred HHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 439 GACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 439 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
..|...|+++.|..+++++...-|.+..+|..|+.+|...|+|+.|+-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 557788999999999999999999999999999999999999999999999985
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=90.85 E-value=5.6 Score=32.23 Aligned_cols=85 Identities=14% Similarity=0.038 Sum_probs=55.0
Q ss_pred hcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 006705 307 KCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFH 386 (634)
Q Consensus 307 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~ 386 (634)
+||++......+-.+.. +....+.-+..+...|+-++-.+++..+... .+|++.....+..||.+.|+..++.+++.
T Consensus 73 ~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n--~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN--NEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp GCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc--CCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 45555555444444432 3334455566777788888877777775442 56777777778888888888888888887
Q ss_pred HhhhccCCcc
Q 006705 387 EIVDCKDGFE 396 (634)
Q Consensus 387 ~~~~~~~~~~ 396 (634)
+.-+. |++
T Consensus 150 ~AC~k--G~k 157 (172)
T 1wy6_A 150 EACKK--GEK 157 (172)
T ss_dssp HHHHT--TCH
T ss_pred HHHHh--hhH
Confidence 77765 543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=90.82 E-value=18 Score=38.13 Aligned_cols=252 Identities=9% Similarity=0.001 Sum_probs=124.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccch
Q 006705 197 GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAAL 276 (634)
Q Consensus 197 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 276 (634)
-+.-+..+.+.+++.....++.. +..+...-.....+....|+..+|....+.+-..| .........++..+.+.|.+
T Consensus 75 r~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 75 QSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCC
Confidence 34444555666677776666655 33344434445555666676666666666655444 22333444455555444332
Q ss_pred HH--HHHHHHHHHHcC-----------CCCch-hHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhh---HHHHHHHHHhc
Q 006705 277 GH--GKQVHSHVLRFE-----------IPSYV-VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS---WNAMLVGYSKH 339 (634)
Q Consensus 277 ~~--a~~i~~~~~~~~-----------~~~~~-~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~---~~~li~~~~~~ 339 (634)
.. ..+=+..+...| ++++. .....++..+.+ ...+....... .++... ...-+.-+.+.
T Consensus 153 t~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~~-~~~~~~~~~~~~~~~rlar~ 228 (618)
T 1qsa_A 153 DPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTT-GATDFTRQMAAVAFASVARQ 228 (618)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHS-CCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhcc-CCChhhHHHHHHHHHHHHhc
Confidence 22 111111111111 11221 122333332222 22222322222 122111 11122333333
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHH
Q 006705 340 GMGREVVELFNLMREENKVKPDSV--TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417 (634)
Q Consensus 340 g~~~~A~~~~~~m~~~~g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 417 (634)
+.+.|..+|....+.....+... ....+.......+...++...+...... .++.....-.+....+.|+++.
T Consensus 229 -d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 229 -DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR----SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp -CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT----CCCHHHHHHHHHHHHHHTCHHH
T ss_pred -CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc----CCChHHHHHHHHHHHHCCCHHH
Confidence 77899999988876522322222 2222333344455355666666665532 2333334444455557899999
Q ss_pred HHHHHHhCCCCC-CHHHHH-HHHHHHHhcCCchHHHHHHHHHhc
Q 006705 418 ALEFIKNMPFEP-TAAILG-SLLGACRVHYNVDIGEFVGQRLME 459 (634)
Q Consensus 418 A~~~~~~m~~~p-~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~ 459 (634)
|...|+.|+..+ +..-|. =+..+....|+.++|..+++.+.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999996432 222221 123456778999999999988875
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=90.20 E-value=1.8 Score=40.47 Aligned_cols=88 Identities=14% Similarity=0.130 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHcC-----CChHHHHHHHhhcCC--C--CcchHHHHHHHHHhC-CChh
Q 006705 75 RGGQRVHAHMIKTCYRPP---VYLRTRLIVFYNKC-----ECLSDARKMFDEMRE--R--NVVSWTAMISAYSQK-AHSF 141 (634)
Q Consensus 75 ~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~-----g~~~~A~~~~~~~~~--~--~~~~~~~li~~~~~~-g~~~ 141 (634)
..|+..+++.++. .|+ -..|..|...|.+. |+.++|.+.|++..+ | +..++......+++. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 4666666776665 344 45677777788773 788888888877643 4 366777777777774 7777
Q ss_pred HHHHHHHHHHHCCCC--CChhhHHH
Q 006705 142 EALNLFIRMLRSDTE--PNEFTFAT 164 (634)
Q Consensus 142 ~A~~~~~~m~~~g~~--p~~~t~~~ 164 (634)
++.+.+++.+..... |+....+.
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHHH
Confidence 888888777776555 55443333
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=90.20 E-value=2.2 Score=35.33 Aligned_cols=38 Identities=16% Similarity=0.383 Sum_probs=29.0
Q ss_pred CCChhhHHHHHHHHHhcCCh------HHHHHHHHHHHHcCCCCCCH
Q 006705 323 ERTVISWNAMLVGYSKHGMG------REVVELFNLMREENKVKPDS 362 (634)
Q Consensus 323 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~g~~pd~ 362 (634)
..|..+|-..+...-+.|++ ++..++|++.... ++|+.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~--~Pp~k 53 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA--LPPDK 53 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH--SCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc--CCccc
Confidence 45777888888888777888 7888888888775 77763
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=89.90 E-value=4.6 Score=30.53 Aligned_cols=87 Identities=16% Similarity=0.032 Sum_probs=64.3
Q ss_pred CCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHh
Q 006705 173 FGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ 252 (634)
Q Consensus 173 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 252 (634)
...++|..|-+.+...+- ...+--.-+..+...|++++|..+.+.+..||.+.|-+|-. .+.|..+++...+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356777777777766653 33333334456678999999999999999999999988876 46788888888888888
Q ss_pred hcCCccChhhHH
Q 006705 253 VEGMISNYVTYA 264 (634)
Q Consensus 253 ~~g~~p~~~t~~ 264 (634)
..| .|....|.
T Consensus 97 ~sg-~p~~q~Fa 107 (116)
T 2p58_C 97 RSQ-DPRIQTFV 107 (116)
T ss_dssp TCC-CHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 776 45555554
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=89.45 E-value=4.3 Score=30.61 Aligned_cols=87 Identities=16% Similarity=0.048 Sum_probs=64.7
Q ss_pred CCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHh
Q 006705 173 FGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ 252 (634)
Q Consensus 173 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 252 (634)
...++|..|-+.+...+- ...+--.-+..+...|++++|..+.+.+..||.+.|-++-. .+.|..+++...+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 346677777777766553 33333334456678999999999999999999999988876 47888888888888888
Q ss_pred hcCCccChhhHH
Q 006705 253 VEGMISNYVTYA 264 (634)
Q Consensus 253 ~~g~~p~~~t~~ 264 (634)
..| .|....|.
T Consensus 96 ~sg-~p~~q~Fa 106 (115)
T 2uwj_G 96 GSS-DPALADFA 106 (115)
T ss_dssp TCS-SHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 776 55555554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=89.09 E-value=1.6 Score=35.09 Aligned_cols=31 Identities=16% Similarity=0.031 Sum_probs=20.3
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhccCCCCCc
Q 006705 436 SLLGACRVHYNVDIGEFVGQRLMEIEPENAG 466 (634)
Q Consensus 436 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 466 (634)
.|.-++.+.|+++.|....+.+++.+|.|..
T Consensus 79 ~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 79 YLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCCCCHH
Confidence 3445666667777777777777777776643
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=87.60 E-value=8.2 Score=40.98 Aligned_cols=80 Identities=13% Similarity=0.029 Sum_probs=39.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh---
Q 006705 231 IISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSK--- 307 (634)
Q Consensus 231 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~--- 307 (634)
....+.-.|+++.|++++.+. ...|.+.+...+..+.-.+- ...++..- .+ .| ..-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHHhh
Confidence 444556688999998877644 25566666666555433322 11111110 00 11 2224566666755
Q ss_pred cCCHHHHHHHHhhc
Q 006705 308 CGSLTYSRRVFDNM 321 (634)
Q Consensus 308 ~g~~~~A~~~f~~m 321 (634)
..++..|.+.|--+
T Consensus 369 ~td~~~Al~Y~~li 382 (661)
T 2qx5_A 369 YSDPRVAVEYLVLI 382 (661)
T ss_dssp TTCHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHH
Confidence 45666776665554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=87.36 E-value=3.3 Score=31.85 Aligned_cols=59 Identities=7% Similarity=-0.038 Sum_probs=25.1
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCC------CCCChhhHHHHHHHHhccCCcHHHHHHHHHHHH
Q 006705 129 AMISAYSQKAHSFEALNLFIRMLRSD------TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIK 187 (634)
Q Consensus 129 ~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 187 (634)
.|...+.+.|++..|...|+.....- -.+....+..+..++.+.|+++.|...++.+.+
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34444555555555555554443310 011222333444444444444444444444443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=87.08 E-value=21 Score=33.86 Aligned_cols=132 Identities=8% Similarity=0.030 Sum_probs=83.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHH----HHHHHHCCCCCChhhHHHHHHHHhc
Q 006705 96 RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNL----FIRMLRSDTEPNEFTFATVLTSCAG 171 (634)
Q Consensus 96 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~~ 171 (634)
+.++..-|.+.+++++|.+++..- ...+.++|+...|-++ .+-..+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 455666678888999998887542 2345566776665554 4555566888888888877777665
Q ss_pred cCCcH-HHHHHHHHHHH----hC--CCCchHHHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhc
Q 006705 172 AFGFE-LGKQIHSLIIK----SN--FESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238 (634)
Q Consensus 172 ~~~~~-~a~~~~~~~~~----~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 238 (634)
...-+ .=.++...+++ .| -.-++.....+...|.+.|++.+|+..|-.-...|...+..|+.-+...
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence 43222 22344444443 22 1236788888999999999999999987532222455555555544443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.11 E-value=27 Score=35.13 Aligned_cols=311 Identities=12% Similarity=0.054 Sum_probs=147.3
Q ss_pred CChhHHHHHHHHHHHC-----CCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHH-hCCCCchHHHHHHHH----HHHhc
Q 006705 138 AHSFEALNLFIRMLRS-----DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIK-SNFESHIYVGSSLLD----MYAKA 207 (634)
Q Consensus 138 g~~~~A~~~~~~m~~~-----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~li~----~y~~~ 207 (634)
|++++|++.+..+.+. ...........++..|...++++...+.+..+.+ +|..+.. ...+++ .....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence 6788888877666532 2334455677788888888888887776665543 2322222 222332 22222
Q ss_pred CCH--HHHHHHHccCCC---CCh-------hhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccc
Q 006705 208 GRI--HEARGVFECLPE---RDV-------VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275 (634)
Q Consensus 208 g~~--~~A~~~~~~m~~---~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 275 (634)
... +.-..+.+.... .-. .....|...|-..|++.+|.+++..+...-...+....
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~------------ 175 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSE------------ 175 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHH------------
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHH------------
Confidence 222 222223322221 110 12234666677777777777777777543111111100
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC------CC----hhhHHHHHHHHHhcCChHHH
Q 006705 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE------RT----VISWNAMLVGYSKHGMGREV 345 (634)
Q Consensus 276 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~------~~----~~~~~~li~~~~~~g~~~~A 345 (634)
-+.++...+..|...+++..|..++.++.. ++ ..-+..++..+...+++.+|
T Consensus 176 ------------------kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a 237 (445)
T 4b4t_P 176 ------------------KIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEV 237 (445)
T ss_dssp ------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred ------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 011222333444444444444444443320 01 12344455555666666666
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHH-----HHHH-hccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHc--CCHHH
Q 006705 346 VELFNLMREENKVKPDSVTYLAV-----LSGC-SHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA--GRVGE 417 (634)
Q Consensus 346 ~~~~~~m~~~~g~~pd~~t~~~l-----l~a~-~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--g~~~~ 417 (634)
...|.+........-|...+..+ +... +..+. .-..+....... ..-++...|..|+.+|... .+++.
T Consensus 238 ~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~--~~~~ll~~~~~~--~~~~~l~~~~~L~k~f~~~~L~~~~~ 313 (445)
T 4b4t_P 238 AQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGN--LQNDLIHKIQND--NNLKKLESQESLVKLFTTNELMRWPI 313 (445)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSS--TTHHHHHSHHHH--SSCHHHHHHHHHHHHHHHCCSSSHHH
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCc--hHHHHHHHHhhc--ccccccHHHHHHHHHHHhchHhhhHH
Confidence 66665554321111222221111 1111 11121 112222222222 2235677888999998764 46777
Q ss_pred HHHHHHhCC-CC-------CCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHH
Q 006705 418 ALEFIKNMP-FE-------PTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRE 489 (634)
Q Consensus 418 A~~~~~~m~-~~-------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 489 (634)
+.+.|...- .. ....-|..|......|+-.. +. .|-+.-.+..|+..+.- ..+++.+.+.
T Consensus 314 ~~~~~~~~L~~~~~~~~~~~~~~~~~~L~~~v~ehnl~~--------i~--k~Ys~I~l~~la~lL~l--~~~evE~~ls 381 (445)
T 4b4t_P 314 VQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRV--------IS--EYYSRITLLRLNELLDL--TESQTETYIS 381 (445)
T ss_dssp HHHHTCSSTTTCCSSCCCSCSSHHHHHHHHHHHHHHHHH--------HH--HHEEEEEHHHHHHHHTS--CHHHHHHHHH
T ss_pred HHHHHHHHhcccchhhhcchhhHHHHHHHHHHHHHHHHH--------HH--HHhceeeHHHHHHHhCc--CHHHHHHHHH
Confidence 777776541 01 11234555555444332110 00 11112233444444432 4678999999
Q ss_pred HHhhCCC
Q 006705 490 LMKEKAV 496 (634)
Q Consensus 490 ~m~~~~~ 496 (634)
.|...|.
T Consensus 382 ~mI~~g~ 388 (445)
T 4b4t_P 382 DLVNQGI 388 (445)
T ss_dssp HHHHHTS
T ss_pred HHHHCCC
Confidence 9977664
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=85.88 E-value=9.9 Score=31.49 Aligned_cols=38 Identities=3% Similarity=0.042 Sum_probs=28.2
Q ss_pred CCChhhHHHHHHHHHhcCCh------HHHHHHHHHHhhcCCccCh
Q 006705 222 ERDVVSCTAIISGYAQLGLD------EEAIELFRKLQVEGMISNY 260 (634)
Q Consensus 222 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~ 260 (634)
..|..+|-..+...-+.|++ ++..++|++.... ++|+.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k 53 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDK 53 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccc
Confidence 35777888888877777888 7888888887764 56653
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=84.88 E-value=6.9 Score=31.35 Aligned_cols=84 Identities=13% Similarity=0.117 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHH---HHHHHHHhhhccCCccC--ChHHHHHHHHHHHHcCCHH
Q 006705 342 GREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDR---GLAVFHEIVDCKDGFEP--EIEHYGCVVDMLGRAGRVG 416 (634)
Q Consensus 342 ~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~---a~~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~ 416 (634)
...+.+-|.+.... |. |+..+-..+..++.++..... |+.+++.+.+. + .| .....-.|.-++.|.|+++
T Consensus 17 l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 17 LLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--G-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--S-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--C-CcchHHHHHHHHHHHHHHhhhHH
Confidence 44555666666555 43 666666677778888776655 89999988864 2 23 3445556777888999999
Q ss_pred HHHHHHHhC-CCCCC
Q 006705 417 EALEFIKNM-PFEPT 430 (634)
Q Consensus 417 ~A~~~~~~m-~~~p~ 430 (634)
+|.+.++.+ ..+|+
T Consensus 92 ~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCC
Confidence 999999886 44554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.54 E-value=6.7 Score=33.07 Aligned_cols=112 Identities=9% Similarity=0.040 Sum_probs=56.3
Q ss_pred HHHHHhcCCHHHHHHHHhhcC-----CCCh-------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHH-HHHHH
Q 006705 302 IDMYSKCGSLTYSRRVFDNMS-----ERTV-------ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV-TYLAV 368 (634)
Q Consensus 302 i~~~~~~g~~~~A~~~f~~m~-----~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~-t~~~l 368 (634)
+..+...|.++.|+-+.+.+. .+++ .+...+..++...|++.+|...|++..+....-|... +..++
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~ 106 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPST 106 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 445556677777666655433 1232 1344455666677777777777766543311222111 11111
Q ss_pred HHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCC
Q 006705 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFE 428 (634)
Q Consensus 369 l~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 428 (634)
- ....... . . ...++.+.--.+..+|.+.|++++|+.+++.+|.+
T Consensus 107 ~----~~ss~p~---------s-~-~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 107 G----NSASTPQ---------S-Q-CLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred c----ccCCCcc---------c-c-cccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 0 0000000 0 0 22334455556777888889999999988888643
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=84.29 E-value=29 Score=32.92 Aligned_cols=168 Identities=10% Similarity=0.038 Sum_probs=95.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHH----HHHHhhcCCccChhhHHHHHHHHh
Q 006705 196 VGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIEL----FRKLQVEGMISNYVTYASVLTALS 271 (634)
Q Consensus 196 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~ 271 (634)
.|.++..=|.+.+++++|.+++.. -...+.+.|+...|-++ .+-..+.+++++..+...++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 344566667888888888887533 22234556666555443 444455677777777777776665
Q ss_pred cccchH-HHHHHHHHHH----HcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhc---CC
Q 006705 272 GLAALG-HGKQVHSHVL----RFE--IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKH---GM 341 (634)
Q Consensus 272 ~~~~~~-~a~~i~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~---g~ 341 (634)
....-+ .=..+...++ +.| ..-++.....+...|.+.|++.+|+..|-.-...|...+..|+--+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 533211 1223333333 333 2246778888999999999999999887633222455555555444333 33
Q ss_pred hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 006705 342 GREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390 (634)
Q Consensus 342 ~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 390 (634)
..++ |...-.+++. |...|++..|..+|+...+
T Consensus 184 ~~e~---------------dlf~~RaVL~-yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 184 DSTV---------------AEFFSRLVFN-YLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHH---------------HHHHHHHHHH-HHHTTBHHHHHHHHHHHHH
T ss_pred cchH---------------HHHHHHHHHH-HHHhcCHHHHHHHHHHHHH
Confidence 3222 1111122222 3346788888888776654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.26 E-value=27 Score=35.15 Aligned_cols=32 Identities=6% Similarity=-0.009 Sum_probs=21.3
Q ss_pred CCCHhhHHHHHHHHhccCCchHHHHHHHHHHH
Q 006705 55 EMRFEEYDTLLNACVNQRTLRGGQRVHAHMIK 86 (634)
Q Consensus 55 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 86 (634)
.........++..|...++++...+.+..+.+
T Consensus 53 ~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 53 ASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33455577778888888888777666655543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=82.48 E-value=2 Score=42.66 Aligned_cols=66 Identities=14% Similarity=-0.009 Sum_probs=54.7
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHh-----hCCCccCC
Q 006705 435 GSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMK-----EKAVTKDP 500 (634)
Q Consensus 435 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~ 500 (634)
..++.++...|+.+++...+..+...+|-+...|..|+.+|.++|+..+|.+.|+... +.|+.|.|
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 4456677788888888888888899999988899999999999999999999998874 34776655
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=81.65 E-value=15 Score=27.80 Aligned_cols=87 Identities=10% Similarity=0.111 Sum_probs=59.5
Q ss_pred chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006705 275 ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354 (634)
Q Consensus 275 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (634)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+.+..||++.|-++-. .+.|..+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45566666666555543 33333333445678899999999999999999999988765 467888888888877776
Q ss_pred cCCCCCCHHHHHH
Q 006705 355 ENKVKPDSVTYLA 367 (634)
Q Consensus 355 ~~g~~pd~~t~~~ 367 (634)
+ | .|....|..
T Consensus 98 s-g-~p~~q~Fa~ 108 (116)
T 2p58_C 98 S-Q-DPRIQTFVN 108 (116)
T ss_dssp C-C-CHHHHHHHH
T ss_pred C-C-CHHHHHHHH
Confidence 5 3 455555543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=81.55 E-value=5.3 Score=30.35 Aligned_cols=61 Identities=18% Similarity=0.205 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHH
Q 006705 344 EVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408 (634)
Q Consensus 344 ~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~ 408 (634)
+..+-++.+... .+.|++....+.|.||.+.+++..|.++|+.++.+ ..+...+|..+++-
T Consensus 28 e~rrglN~l~~~-DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K---~~~~~~iY~~~lqE 88 (109)
T 1v54_E 28 ELRKGMNTLVGY-DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK---AGPHKEIYPYVIQE 88 (109)
T ss_dssp HHHHHHHHHTTS-SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTTCTTHHHHHHHH
T ss_pred HHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---hcCchhhHHHHHHH
Confidence 555556666666 78899999999999999999999999999988864 34445677777653
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=81.28 E-value=6.6 Score=29.85 Aligned_cols=57 Identities=16% Similarity=0.171 Sum_probs=41.7
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 006705 44 KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIV 101 (634)
Q Consensus 44 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 101 (634)
+.+..+....+.|++....+.|+||.+.+++..|.++++-+...- .....+|..+++
T Consensus 31 rglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 31 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 345555666788888889999999998899888988888877653 233455666654
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=81.12 E-value=14 Score=27.90 Aligned_cols=87 Identities=10% Similarity=0.061 Sum_probs=60.3
Q ss_pred chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006705 275 ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354 (634)
Q Consensus 275 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (634)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+.+..||+++|-++-. .+.|..+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45566666665555543 33333333445678899999999999999999999988754 477888888888878877
Q ss_pred cCCCCCCHHHHHH
Q 006705 355 ENKVKPDSVTYLA 367 (634)
Q Consensus 355 ~~g~~pd~~t~~~ 367 (634)
+ | .|....|..
T Consensus 97 s-g-~p~~q~Fa~ 107 (115)
T 2uwj_G 97 S-S-DPALADFAA 107 (115)
T ss_dssp C-S-SHHHHHHHH
T ss_pred C-C-CHHHHHHHH
Confidence 6 3 455555543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=80.26 E-value=42 Score=32.06 Aligned_cols=167 Identities=11% Similarity=0.070 Sum_probs=97.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHH----HHHHhhcCCccChhhHHHHHHHHhc
Q 006705 197 GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIEL----FRKLQVEGMISNYVTYASVLTALSG 272 (634)
Q Consensus 197 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~~ 272 (634)
+.++..=|.+.+++++|.+++.. -...+.+.|+...|-++ ++-..+.++++|..+..-++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 34566668889999999987632 22335566776555444 3555667788888877777777665
Q ss_pred ccchH-HHHHHHHHH----HHcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHH
Q 006705 273 LAALG-HGKQVHSHV----LRFE--IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREV 345 (634)
Q Consensus 273 ~~~~~-~a~~i~~~~----~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 345 (634)
...-+ .=..+...+ .+.| ..-|+.....+...|.+.+++.+|+..|-.-..+.+..+..|+--+...+...+
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e- 185 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT- 185 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG-
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc-
Confidence 54321 112233333 3333 334677788889999999999999998853222223555555544433332111
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 006705 346 VELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390 (634)
Q Consensus 346 ~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 390 (634)
+|...-.++|. |...+++..|..+++...+
T Consensus 186 --------------~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 --------------APLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------HHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 22222333333 3345677777776655543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 634 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.87 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.47 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.46 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.97 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.93 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.89 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.88 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.82 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.81 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.8 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.77 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.76 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.63 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.38 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.37 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.26 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.25 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.16 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.15 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.12 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.11 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.1 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.09 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.06 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.95 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.83 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.82 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.82 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.8 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.74 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.7 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.64 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.61 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.6 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.55 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.54 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.48 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.46 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.43 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.41 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.41 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.33 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.28 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.25 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.1 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.85 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.76 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.75 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.64 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.63 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.42 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.28 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.69 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 94.96 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 92.47 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 91.01 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 90.86 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 90.24 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 82.1 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 81.48 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 81.18 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 80.59 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=6e-20 Score=185.23 Aligned_cols=374 Identities=10% Similarity=0.083 Sum_probs=237.9
Q ss_pred HHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC--C-CcchHHHHHHHHHhCCChhH
Q 006705 66 NACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE--R-NVVSWTAMISAYSQKAHSFE 142 (634)
Q Consensus 66 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~ 142 (634)
..+.+.|+++.|.+.++.+++.. +.+..++..+...|.+.|++++|...|++..+ | +..+|..+...|.+.|++++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccc
Confidence 33445566666666666665553 23344555555566666666666666655432 2 33455555556666666666
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC
Q 006705 143 ALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE 222 (634)
Q Consensus 143 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 222 (634)
|+..+........ .+............................... .
T Consensus 86 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~ 132 (388)
T d1w3ba_ 86 AIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--------------------------------P 132 (388)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--------------------------------T
T ss_pred ccccccccccccc-ccccccccccccccccccccccccccccccccc--------------------------------c
Confidence 6666555554321 122222222222222233333332222222221 1
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHH
Q 006705 223 RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302 (634)
Q Consensus 223 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li 302 (634)
.....+..........+....+...+.+..... +-+...+..+...+...+.++.|...+...++.. +.+...+..+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 210 (388)
T d1w3ba_ 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLG 210 (388)
T ss_dssp TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHh
Confidence 222233333334444455555555554444332 2223344444455555566666666666555543 34455666777
Q ss_pred HHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHH
Q 006705 303 DMYSKCGSLTYSRRVFDNMS---ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMED 379 (634)
Q Consensus 303 ~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~ 379 (634)
..|...|++++|...|++.. ..+...|..+...+.+.|++++|++.|++..+. .+-+..++..+..++...|+++
T Consensus 211 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~ 288 (388)
T d1w3ba_ 211 NVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVA 288 (388)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHH
T ss_pred hhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence 77778888888887777654 345667777888888899999999999888775 2334577888888899999999
Q ss_pred HHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 006705 380 RGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEP-TAAILGSLLGACRVHYNVDIGEFVGQRL 457 (634)
Q Consensus 380 ~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 457 (634)
+|...++..... .+.+...+..+...|.+.|++++|++.|++. ...| +..+|..+..++...|++++|...++++
T Consensus 289 ~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 365 (388)
T d1w3ba_ 289 EAEDCYNTALRL---CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365 (388)
T ss_dssp HHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHhhhcc---CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999888763 3567788888999999999999999999885 4444 4667888889999999999999999999
Q ss_pred hccCCCCCchHHHHHHHHhhcCC
Q 006705 458 MEIEPENAGNYVILSNLYASAGR 480 (634)
Q Consensus 458 ~~~~p~~~~~~~~l~~~~~~~g~ 480 (634)
++++|+++.+|..|+.+|.+.|+
T Consensus 366 l~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 366 IRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999988875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=8.4e-19 Score=176.68 Aligned_cols=354 Identities=14% Similarity=0.110 Sum_probs=286.3
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 006705 131 ISAYSQKAHSFEALNLFIRMLRSDTEP-NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209 (634)
Q Consensus 131 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 209 (634)
...+.+.|++++|++.|+++.+. .| +...+..+...+...|++++|...+..+++.. +.+..++..+..+|.+.|+
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 44566778888888888888764 34 45667777778888889999999988888875 5567788889999999999
Q ss_pred HHHHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHH
Q 006705 210 IHEARGVFECLPE---RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHV 286 (634)
Q Consensus 210 ~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~ 286 (634)
+++|...+..... .+...+..........+....+........... .................+....+.......
T Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHh
Confidence 9999998887654 344455555555666667777766666665543 334444445555666777777787777777
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHH
Q 006705 287 LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS---ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363 (634)
Q Consensus 287 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~ 363 (634)
.... +.+...+..+...+...|++++|...+++.. ..+..+|..+...+...|++++|+..|++.... .+.+..
T Consensus 162 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~ 238 (388)
T d1w3ba_ 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHH
T ss_pred hccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHH--hhhHHH
Confidence 7664 5567788888999999999999999998765 346778999999999999999999999999886 345667
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHH
Q 006705 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM--PFEPTAAILGSLLGAC 441 (634)
Q Consensus 364 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~ 441 (634)
.+..+...+...|++++|...|+...+. -+.+...+..+...|.+.|++++|.+.++.. ..+.+...+..+...+
T Consensus 239 ~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 315 (388)
T d1w3ba_ 239 VHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHH
Confidence 7888888999999999999999999864 2345788999999999999999999999876 2346778889999999
Q ss_pred HhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 442 RVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 442 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
...|++++|...+++++++.|+++.++..++.+|.+.|++++|.+.+++..+.
T Consensus 316 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998753
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=3.4e-12 Score=124.57 Aligned_cols=265 Identities=12% Similarity=0.024 Sum_probs=163.5
Q ss_pred HHHHHHhcCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccch
Q 006705 200 LLDMYAKAGRIHEARGVFECLPE---RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAAL 276 (634)
Q Consensus 200 li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 276 (634)
....|.+.|++++|...|+++.+ .+..+|..+...|...|++++|+..|.+..+.. +-+...+..+...+...|++
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccc
Confidence 44455666667777666666532 244566666666666666666666666665542 12334455555556666666
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006705 277 GHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356 (634)
Q Consensus 277 ~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 356 (634)
++|.+.+..+.+..... ............ ..+.......+..+...+.+.+|.+.|.+..+..
T Consensus 104 ~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~ 166 (323)
T d1fcha_ 104 RQACEILRDWLRYTPAY-AHLVTPAEEGAG----------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD 166 (323)
T ss_dssp HHHHHHHHHHHHTSTTT-GGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccccchhhHHHhccch-HHHHHhhhhhhh----------------hcccccchhhHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 66666666555432110 000000000000 0011111112233445566778888888877652
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHH
Q 006705 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEP-TAAIL 434 (634)
Q Consensus 357 g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~ 434 (634)
.-.++...+..+...+...|++++|...|+...... +-+...|..+...|.+.|++++|.+.|++. ...| +..+|
T Consensus 167 p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 243 (323)
T d1fcha_ 167 PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR---PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR 243 (323)
T ss_dssp TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hcccccccchhhHHHHHHHHHHhhhhcccccccccc---cccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHH
Confidence 334456777788888889999999999999988642 335778889999999999999999999886 3233 56788
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhccCCCCCchH-----------HHHHHHHhhcCCcHHHH
Q 006705 435 GSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY-----------VILSNLYASAGRWEDVT 485 (634)
Q Consensus 435 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~-----------~~l~~~~~~~g~~~~A~ 485 (634)
..+..+|...|++++|...+++++++.|++...+ ..+..++...|+.+.+.
T Consensus 244 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 244 YNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 8899999999999999999999999888765543 33445555556555443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=2.7e-12 Score=125.23 Aligned_cols=241 Identities=9% Similarity=-0.042 Sum_probs=157.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 006705 230 AIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309 (634)
Q Consensus 230 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g 309 (634)
.....+.+.|++++|+..|++..+.. +-+..+|..+..++...|+++.|...+..+++.. +.+...+..+...|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 34555667777777777777776642 2234455555566666666666666666655543 233444555555555555
Q ss_pred CHHHHHHHHhhcCC--CChh-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 006705 310 SLTYSRRVFDNMSE--RTVI-SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFH 386 (634)
Q Consensus 310 ~~~~A~~~f~~m~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~ 386 (634)
++++|.+.++.... |+.. .+...... ....+.......+..+...+...++...+.
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEG---------------------AGGAGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC------------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhh---------------------hhhcccccchhhHHHHHHhhHHHHHHHHHH
Confidence 55555555544321 1100 00000000 000000011111222334466778888888
Q ss_pred HhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC
Q 006705 387 EIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN 464 (634)
Q Consensus 387 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 464 (634)
...+.. .-.++..++..+...+.+.|++++|+..+++. .. +.+...|..+...+...|++++|...++++++++|++
T Consensus 161 ~al~~~-p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 239 (323)
T d1fcha_ 161 AAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 239 (323)
T ss_dssp HHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHh-hcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhcc
Confidence 877643 33446788899999999999999999999986 22 3457789999999999999999999999999999999
Q ss_pred CchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 465 AGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 465 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
+.+|..++.+|.+.|++++|.+.+++..+.
T Consensus 240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 240 IRSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999998663
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.97 E-value=3.8e-08 Score=94.42 Aligned_cols=186 Identities=9% Similarity=0.041 Sum_probs=146.7
Q ss_pred cchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-C-hhhHHHHHHHHHhcCChHHHHHHH
Q 006705 274 AALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE--R-T-VISWNAMLVGYSKHGMGREVVELF 349 (634)
Q Consensus 274 ~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~-~~~~~~li~~~~~~g~~~~A~~~~ 349 (634)
+..+++..+++..++...+.+...+..++..+.+.|+++.|..+|+++.+ | + ...|...+..+.+.|+.++|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34577888999888776677778888899999999999999999998753 2 3 347889999999999999999999
Q ss_pred HHHHHcCCCCCCHHHHHHHHH-HHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC---
Q 006705 350 NLMREENKVKPDSVTYLAVLS-GCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM--- 425 (634)
Q Consensus 350 ~~m~~~~g~~pd~~t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--- 425 (634)
+++.+. + +.+...|..... -+...|+.+.|..+|+.+.+. .+.+...|..+++.+.+.|+++.|..+|++.
T Consensus 158 ~~al~~-~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~---~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~ 232 (308)
T d2onda1 158 KKARED-A-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHTS-T-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHh-C-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 998876 2 223334433332 234568899999999999874 3556788999999999999999999999985
Q ss_pred -CCCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC
Q 006705 426 -PFEPT--AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN 464 (634)
Q Consensus 426 -~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 464 (634)
+..|+ ...|...+..-..+|+.+.+..+.+++.+..|.+
T Consensus 233 ~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 33332 5678888888889999999999999888887765
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.93 E-value=1.1e-07 Score=92.56 Aligned_cols=195 Identities=13% Similarity=-0.014 Sum_probs=123.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcC-------CC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCCCHHH
Q 006705 299 NSLIDMYSKCGSLTYSRRVFDNMS-------ER----TVISWNAMLVGYSKHGMGREVVELFNLMREEN---KVKPDSVT 364 (634)
Q Consensus 299 ~~li~~~~~~g~~~~A~~~f~~m~-------~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---g~~pd~~t 364 (634)
..+...|...|++..|...+.... .+ ....+..+...+...|+++.+...+....... +......+
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 174 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 174 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence 334445555666665555554432 11 11244455666777888888888877766541 11112234
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhccCCccC----ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-----CCHHHH
Q 006705 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP----EIEHYGCVVDMLGRAGRVGEALEFIKNM-PFE-----PTAAIL 434 (634)
Q Consensus 365 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-----p~~~~~ 434 (634)
+......+...+....+...+............ ....+..+...+...|++++|...+.+. ... .....+
T Consensus 175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 254 (366)
T d1hz4a_ 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 254 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence 444555566777777777776665543211111 1334566667778888999988888875 111 123455
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhc------cCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 435 GSLLGACRVHYNVDIGEFVGQRLME------IEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 435 ~~ll~~~~~~~~~~~a~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
..+..++...|+++.|...++++.. ..|.....+..++.+|.+.|++++|.+.+++..+
T Consensus 255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6677888888999988888877763 3344556788899999999999999999988754
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=5.2e-08 Score=93.57 Aligned_cols=209 Identities=8% Similarity=0.018 Sum_probs=111.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 006705 227 SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYS 306 (634)
Q Consensus 227 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~ 306 (634)
.|+-+...+.+.+.+++|+++++++.+. .|+. ...|+.....+.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~----------------------------------~~a~~~r~~~l~ 88 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAAN----------------------------------YTVWHFRRVLLK 88 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTC----------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCC----------------------------------hHHHHHHHHHHH
Confidence 4555555566666666676666666653 3433 333333343444
Q ss_pred hcC-CHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 006705 307 KCG-SLTYSRRVFDNMS---ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGL 382 (634)
Q Consensus 307 ~~g-~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 382 (634)
+.| ++++|...+++.. ..+..+|+.+...+.+.|++++|++.++++.+. -+-+...|..+...+...|++++|.
T Consensus 89 ~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al 166 (315)
T d2h6fa1 89 SLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNEL 166 (315)
T ss_dssp HTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred HhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhh--hhcchHHHHHHHHHHHHHHhhHHHH
Confidence 433 2455555544433 224455555555555566666666666666554 2233455555555566666666666
Q ss_pred HHHHHhhhccCCccCChHHHHHHHHHHHHcCC------HHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCchHHHHHH
Q 006705 383 AVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR------VGEALEFIKNM-PFE-PTAAILGSLLGACRVHYNVDIGEFVG 454 (634)
Q Consensus 383 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~ 454 (634)
..++.+.+.. +.+...|+.+...+.+.+. +++|++.+.+. ... .+...|..+...+.. ...+++...+
T Consensus 167 ~~~~~al~~~---p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~ 242 (315)
T d2h6fa1 167 QYVDQLLKED---VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLL 242 (315)
T ss_dssp HHHHHHHHHC---TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHH
T ss_pred HHHHHHHHHC---CccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHH
Confidence 6666665421 2234455555555554443 45666665554 222 356666666555443 3356667777
Q ss_pred HHHhccCCCCCc--hHHHHHHHHhh
Q 006705 455 QRLMEIEPENAG--NYVILSNLYAS 477 (634)
Q Consensus 455 ~~~~~~~p~~~~--~~~~l~~~~~~ 477 (634)
+.+.++.|.... .+..++.+|..
T Consensus 243 ~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 243 NQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 777777776433 34455666543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.88 E-value=2.6e-07 Score=89.74 Aligned_cols=258 Identities=8% Similarity=-0.068 Sum_probs=134.9
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCC----hhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCC--C---chHHHHHHHH
Q 006705 132 SAYSQKAHSFEALNLFIRMLRSDTEPN----EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE--S---HIYVGSSLLD 202 (634)
Q Consensus 132 ~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~---~~~~~~~li~ 202 (634)
..+...|++++|+.++++.+......+ ...+..+...+...|++++|...+..+++.... . ....+..+..
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 99 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 345566666666666666655321111 123444445566666666666666665543211 1 1233445556
Q ss_pred HHHhcCCHHHHHHHHccCC-------CCC----hhhHHHHHHHHHhcCChHHHHHHHHHHhhcCC----ccChhhHHHHH
Q 006705 203 MYAKAGRIHEARGVFECLP-------ERD----VVSCTAIISGYAQLGLDEEAIELFRKLQVEGM----ISNYVTYASVL 267 (634)
Q Consensus 203 ~y~~~g~~~~A~~~~~~m~-------~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~t~~~ll 267 (634)
.|...|++..|...+.... .+. ...+..+...+...|+++.+...+........ .....++....
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 179 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 6666777776666655431 111 12344555667777777777777776654321 11222333344
Q ss_pred HHHhcccchHHHHHHHHHHHHcC----CCC--chhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-------ChhhHHHHHH
Q 006705 268 TALSGLAALGHGKQVHSHVLRFE----IPS--YVVLQNSLIDMYSKCGSLTYSRRVFDNMSER-------TVISWNAMLV 334 (634)
Q Consensus 268 ~~~~~~~~~~~a~~i~~~~~~~~----~~~--~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-------~~~~~~~li~ 334 (634)
..+...+....+...+....... ..+ ....+..+...+...|+++.|...+...... ....+..+..
T Consensus 180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 259 (366)
T d1hz4a_ 180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 259 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 44555666666665555444321 101 1223444555666677777777776665431 1233445566
Q ss_pred HHHhcCChHHHHHHHHHHHHc---CCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhh
Q 006705 335 GYSKHGMGREVVELFNLMREE---NKVKPDS-VTYLAVLSGCSHGGMEDRGLAVFHEIV 389 (634)
Q Consensus 335 ~~~~~g~~~~A~~~~~~m~~~---~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~ 389 (634)
.+...|++++|...+++.... .+..|+. .++..+..++...|++++|.+.+++..
T Consensus 260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 260 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666777777777766655421 0233332 344555555666666666666666554
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=2e-07 Score=89.35 Aligned_cols=191 Identities=10% Similarity=-0.014 Sum_probs=122.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCccChhhHHHHHHH
Q 006705 194 IYVGSSLLDMYAKAGRIHEARGVFECLPE---RDVVSCTAIISGYAQLG-LDEEAIELFRKLQVEGMISNYVTYASVLTA 269 (634)
Q Consensus 194 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 269 (634)
..+++.+...+.+.+..++|+++++++.+ .+..+|+.....+...| ++++|+..+++..+.. +-+..+|......
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 45677788889999999999999998864 36678999988888876 4899999999988753 2345566666667
Q ss_pred HhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCC-----
Q 006705 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGM----- 341 (634)
Q Consensus 270 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~----- 341 (634)
+...|++++|...+..+++.. +.+...|+.+...+.+.|++++|.+.|+++.+ .+..+|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhh
Confidence 777777777777777777664 44566666666666666666666666666542 244556555555544443
Q ss_pred -hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhh
Q 006705 342 -GREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389 (634)
Q Consensus 342 -~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 389 (634)
+++|++.+.+..+. .+.|...+..+...+...| .+++...++...
T Consensus 201 ~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~ 246 (315)
T d2h6fa1 201 VLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRG-LSKYPNLLNQLL 246 (315)
T ss_dssp HHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTC-GGGCHHHHHHHH
T ss_pred hhHHhHHHHHHHHHh--CCCchHHHHHHHHHHHhcC-hHHHHHHHHHHH
Confidence 34555555555543 1223344444433333332 344444444443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.81 E-value=1.5e-07 Score=90.14 Aligned_cols=180 Identities=10% Similarity=0.034 Sum_probs=129.9
Q ss_pred CcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC--C-C-hhhHHHHHHHHHhcCChHHHHHHHH
Q 006705 174 GFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE--R-D-VVSCTAIISGYAQLGLDEEAIELFR 249 (634)
Q Consensus 174 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~-~~~~~~li~~~~~~g~~~~A~~~~~ 249 (634)
..+.+..+++.+++...+.+...+...+..+.+.|+++.|..+|+++.. + + ...|...+....+.|+.++|.++|.
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3467777888877665566667788888888888889988888887643 2 2 3468888888888888888988888
Q ss_pred HHhhcCCccChhhHHHHHH-HHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC----
Q 006705 250 KLQVEGMISNYVTYASVLT-ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER---- 324 (634)
Q Consensus 250 ~m~~~g~~p~~~t~~~ll~-~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---- 324 (634)
++.+.+. .+...|..... -+...|+.+.|..+++.+++. .+.+...+...++.+.+.|+++.|+.+|++....
T Consensus 159 ~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 8876542 23333333222 233457788888888888876 3556778888888888888888888888875321
Q ss_pred ---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006705 325 ---TVISWNAMLVGYSKHGMGREVVELFNLMREE 355 (634)
Q Consensus 325 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 355 (634)
....|...+.--..+|+.+.+.++++++.+.
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2346887777777888888888888877664
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.80 E-value=4.4e-08 Score=91.19 Aligned_cols=199 Identities=9% Similarity=-0.055 Sum_probs=106.4
Q ss_pred hHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHh
Q 006705 262 TYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSK 338 (634)
Q Consensus 262 t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~ 338 (634)
++..+-..+.+.|++++|...+...++.. |.++.+++.+..+|.+.|++++|...|+++.+ .+..+|..+...|..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence 34444455556666666666666666554 44566666777777777777777777776652 245567777777777
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcC----C
Q 006705 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAG----R 414 (634)
Q Consensus 339 ~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g----~ 414 (634)
.|++++|++.|++..+. .+.+......+..++...+..+....+....... .+....++. +..+.... .
T Consensus 118 ~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~ 190 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS----DKEQWGWNI-VEFYLGNISEQTL 190 (259)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS----CCCSTHHHH-HHHHTTSSCHHHH
T ss_pred HhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc----chhhhhhhH-HHHHHHHHHHHHH
Confidence 77777777777777665 2223333333333344444444444444444322 222222221 22221111 1
Q ss_pred HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchH
Q 006705 415 VGEALEFIKNM-PFEPT-AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468 (634)
Q Consensus 415 ~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 468 (634)
.+.+...+... ...|+ ..+|..+...+...|+++.|...+++++..+|++...|
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 246 (259)
T d1xnfa_ 191 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246 (259)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred HHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 22222211111 01111 23455566777777888888888888777777754333
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.77 E-value=2.6e-08 Score=92.74 Aligned_cols=194 Identities=10% Similarity=-0.038 Sum_probs=134.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 006705 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMS---ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG 371 (634)
Q Consensus 295 ~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a 371 (634)
..++..+...|.+.|++++|...|++.. ..++.+|+.+..+|.+.|++++|++.|++..+. -+-+..++..+..+
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~ 114 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIA 114 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--HhhhhhhHHHHHHH
Confidence 3466677889999999999999999876 347889999999999999999999999999986 23345678888899
Q ss_pred HhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc----CC
Q 006705 372 CSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTAAILGSLLGACRVH----YN 446 (634)
Q Consensus 372 ~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~----~~ 446 (634)
+...|++++|...|+...+.. +.+......+...+.+.+..+.+..+.... ...++...++. +..+... +.
T Consensus 115 ~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 190 (259)
T d1xnfa_ 115 LYYGGRDKLAQDDLLAFYQDD---PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI-VEFYLGNISEQTL 190 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHH-HHHHTTSSCHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhhc---cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhH-HHHHHHHHHHHHH
Confidence 999999999999999998641 234444444555556666655555444433 11122222221 2111111 11
Q ss_pred chHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 447 VDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 447 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
.+.+...+.......|....+|..|+..|...|++++|.+.++.....
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 191 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 222222222223344555567888999999999999999999998764
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.76 E-value=7.4e-09 Score=100.85 Aligned_cols=229 Identities=10% Similarity=-0.030 Sum_probs=154.5
Q ss_pred hcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhccc--chHHHHHHHHHHHHcCCCCchhHH-HHHHHHHHhcCCHHH
Q 006705 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA--ALGHGKQVHSHVLRFEIPSYVVLQ-NSLIDMYSKCGSLTY 313 (634)
Q Consensus 237 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~i~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~ 313 (634)
..|++++|+.+++...+.. +-+...+.....++...+ +++++...+..+++... .+...+ ..+...+...|..+.
T Consensus 85 ~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAE 162 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHH
Confidence 3445667777777776642 223334444444444444 46777777777777653 334433 344566777888999
Q ss_pred HHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 006705 314 SRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390 (634)
Q Consensus 314 A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 390 (634)
|...++...+ .+..+|+.+...+.+.|++++|...+.+..+. .|+.. .+...+...+..+++...+.....
T Consensus 163 Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~ 236 (334)
T d1dcea1 163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV---LLKEL---ELVQNAFFTDPNDQSAWFYHRWLL 236 (334)
T ss_dssp HHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH---HHHHH---HHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh---HHHHH---HHHHHHHHhcchhHHHHHHHHHHH
Confidence 9998888775 36678888888888899888887766555443 22221 122233444556667777777665
Q ss_pred ccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchH
Q 006705 391 CKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEP-TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468 (634)
Q Consensus 391 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 468 (634)
. -+++...+..++..+...|+.++|...+.+. +..| +..+|..+..++...|+.++|...++++.+++|.+...|
T Consensus 237 ~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~ 313 (334)
T d1dcea1 237 G---RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 313 (334)
T ss_dssp S---CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred h---CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHH
Confidence 3 2445556667777888889999999988876 4344 345677788889999999999999999999999877777
Q ss_pred HHHHHHHh
Q 006705 469 VILSNLYA 476 (634)
Q Consensus 469 ~~l~~~~~ 476 (634)
..|...+.
T Consensus 314 ~~L~~~~~ 321 (334)
T d1dcea1 314 DDLRSKFL 321 (334)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77766665
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.63 E-value=4.7e-08 Score=94.99 Aligned_cols=228 Identities=9% Similarity=-0.051 Sum_probs=136.9
Q ss_pred cCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcCC--hHHHHHHHHHHhhcCCccChhhHH-HHHHHHhcccchHHHH
Q 006705 207 AGRIHEARGVFECLPE---RDVVSCTAIISGYAQLGL--DEEAIELFRKLQVEGMISNYVTYA-SVLTALSGLAALGHGK 280 (634)
Q Consensus 207 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~ 280 (634)
.|++++|..+|+.... ++...|..+..++...++ +++|+..+.++.+.. +++...+. .....+...+..+.|.
T Consensus 86 ~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al 164 (334)
T d1dcea1 86 AALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEEL 164 (334)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHH
Confidence 3445556555555432 345566666555555543 567777777766542 22333332 2334455566677777
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 006705 281 QVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360 (634)
Q Consensus 281 ~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p 360 (634)
..+..+++.+ +.+...++.+...+.+.|++++|...+....+-.... ......+...+..+++...+...... -++
T Consensus 165 ~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~a~~~~~~~l~~--~~~ 240 (334)
T d1dcea1 165 AFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE-LELVQNAFFTDPNDQSAWFYHRWLLG--RAE 240 (334)
T ss_dssp HHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH-HHHHHHHHHHCSSCSHHHHHHHHHHS--CCC
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHH-HHHHHHHHHhcchhHHHHHHHHHHHh--Ccc
Confidence 7776666655 4566677777777777787777765555443221111 12233345566677777777777664 234
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 006705 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPT-AAILGSLL 438 (634)
Q Consensus 361 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll 438 (634)
+..++..+...+...++.++|...+....+. -+.+...+..+...|.+.|++++|.+.+++. ...|+ ...|..|.
T Consensus 241 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~ 317 (334)
T d1dcea1 241 PLFRCELSVEKSTVLQSELESCKELQELEPE---NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 317 (334)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh---CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHH
Confidence 4455555666667778888888888777643 1335667777888888888888888888876 33453 44556555
Q ss_pred HHHH
Q 006705 439 GACR 442 (634)
Q Consensus 439 ~~~~ 442 (634)
..+.
T Consensus 318 ~~~~ 321 (334)
T d1dcea1 318 SKFL 321 (334)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=8.4e-06 Score=71.28 Aligned_cols=87 Identities=10% Similarity=-0.073 Sum_probs=72.0
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHH
Q 006705 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRG 381 (634)
Q Consensus 302 i~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a 381 (634)
...+...|+++.|.+.|.++..++...|..+...|...|++++|++.|++..+. -+-+...|..+..++.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhccHHHH
Confidence 344677899999999999888888888888999999999999999999988876 234457788888888899999999
Q ss_pred HHHHHHhhh
Q 006705 382 LAVFHEIVD 390 (634)
Q Consensus 382 ~~~~~~~~~ 390 (634)
...|+....
T Consensus 90 ~~~~~kAl~ 98 (192)
T d1hh8a_ 90 IKDLKEALI 98 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988888765
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.37 E-value=1e-06 Score=78.06 Aligned_cols=97 Identities=8% Similarity=-0.046 Sum_probs=67.3
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHH
Q 006705 397 PEIEHYGCVVDMLGRAGRVGEALEFIKNM-P-FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNL 474 (634)
Q Consensus 397 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 474 (634)
|+...+......|.+.|++++|+..|.+. . .+.+...|..+..+|...|+++.|...++++++++|+++.+|..++.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 45555666666777777777777777654 2 133556677777777777777777777777777777777777777777
Q ss_pred HhhcCCcHHHHHHHHHHhh
Q 006705 475 YASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 475 ~~~~g~~~~A~~~~~~m~~ 493 (634)
|.+.|++++|...++...+
T Consensus 82 ~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 7777777777777776644
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=3.2e-06 Score=67.28 Aligned_cols=90 Identities=12% Similarity=0.084 Sum_probs=65.8
Q ss_pred HHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcH
Q 006705 405 VVDMLGRAGRVGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482 (634)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 482 (634)
-...+.+.|++++|+..|++. ..+.+...|..+..++...|++++|...+.++++++|+++..|..++.+|...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 355566777777777777765 223456667777777777777777777777777778877777778888888888888
Q ss_pred HHHHHHHHHhhC
Q 006705 483 DVTRVRELMKEK 494 (634)
Q Consensus 483 ~A~~~~~~m~~~ 494 (634)
+|.+.++...+.
T Consensus 89 ~A~~~~~~a~~~ 100 (117)
T d1elwa_ 89 EAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 888877777653
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=5.6e-06 Score=65.82 Aligned_cols=104 Identities=13% Similarity=-0.027 Sum_probs=77.3
Q ss_pred HHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCC
Q 006705 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-P-FEPTAAILGSLLGACRVHYN 446 (634)
Q Consensus 369 l~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~ 446 (634)
...+...|++++|...|+..++.. +.+...|..+..+|.+.|++++|+..+.+. . .+.+...|..+..++...|+
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD---PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC---CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 345667788888888888877531 445667888888888888888888888775 1 23467778888888888888
Q ss_pred chHHHHHHHHHhccCCCCCchHHHHHHHH
Q 006705 447 VDIGEFVGQRLMEIEPENAGNYVILSNLY 475 (634)
Q Consensus 447 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 475 (634)
+++|...++++++++|+++..+..+.++-
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 88888888888888888877666665543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.16 E-value=3.4e-05 Score=72.42 Aligned_cols=123 Identities=13% Similarity=0.003 Sum_probs=57.2
Q ss_pred HHHHHhCCChhHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCC-----CchHHHHHH
Q 006705 131 ISAYSQKAHSFEALNLFIRMLRS----DTEPN-EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE-----SHIYVGSSL 200 (634)
Q Consensus 131 i~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-----~~~~~~~~l 200 (634)
...|...|++++|++.|.+.... +-+++ ..+|..+..++...|++++|...+..+.+.... ....++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 44555666666666666655431 11111 234455555555566666665555554432100 012233334
Q ss_pred HHHHHh-cCCHHHHHHHHccCCC-----CC----hhhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 006705 201 LDMYAK-AGRIHEARGVFECLPE-----RD----VVSCTAIISGYAQLGLDEEAIELFRKLQV 253 (634)
Q Consensus 201 i~~y~~-~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 253 (634)
...|.. .|++++|.+.|++..+ .+ ..+|..+...|...|++++|+..|++...
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 444432 3555555555543321 00 12344455555555555555555555544
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.15 E-value=2.8e-06 Score=66.98 Aligned_cols=88 Identities=9% Similarity=-0.068 Sum_probs=78.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCc
Q 006705 404 CVVDMLGRAGRVGEALEFIKNM-PFEP-TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW 481 (634)
Q Consensus 404 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 481 (634)
.+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..|+.+|...|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 4567788899999999999986 2234 5788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 006705 482 EDVTRVRELM 491 (634)
Q Consensus 482 ~~A~~~~~~m 491 (634)
++|.+.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.12 E-value=6.9e-05 Score=70.16 Aligned_cols=194 Identities=9% Similarity=0.001 Sum_probs=86.1
Q ss_pred HHHHHhcCChHHHHHHHHHHhhc----CCccC-hhhHHHHHHHHhcccchHHHHHHHHHHHHc----C-CCCchhHHHHH
Q 006705 232 ISGYAQLGLDEEAIELFRKLQVE----GMISN-YVTYASVLTALSGLAALGHGKQVHSHVLRF----E-IPSYVVLQNSL 301 (634)
Q Consensus 232 i~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~----~-~~~~~~~~~~l 301 (634)
...|...|++++|.+.|.+..+. +-+++ ..+|..+..+|.+.|++++|...+....+. | ......++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 44455555555555555554331 11111 124444555555555555555555544332 0 00012223333
Q ss_pred HHHHHh-cCCHHHHHHHHhhcCC-----C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----CH-HHHH
Q 006705 302 IDMYSK-CGSLTYSRRVFDNMSE-----R----TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP----DS-VTYL 366 (634)
Q Consensus 302 i~~~~~-~g~~~~A~~~f~~m~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p----d~-~t~~ 366 (634)
...|.. .|++++|...|++..+ . -..+|..+...|...|++++|++.|++........+ .. ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 333422 3555555555554321 0 122455566666666666666666666655310011 00 1122
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhhccCCccC--ChHHHHHHHHHHHH--cCCHHHHHHHHHhC
Q 006705 367 AVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP--EIEHYGCVVDMLGR--AGRVGEALEFIKNM 425 (634)
Q Consensus 367 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p--~~~~~~~li~~~~~--~g~~~~A~~~~~~m 425 (634)
..+..+...|+++.|...++...+..+.+.. .......++.++.. .+.+++|+..|+++
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 2333444556666666666666533111110 11233444444443 23456666666554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=1.5e-05 Score=67.29 Aligned_cols=116 Identities=7% Similarity=-0.022 Sum_probs=85.0
Q ss_pred HHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCC
Q 006705 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYN 446 (634)
Q Consensus 369 l~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~ 446 (634)
...|.+.|++++|...|+...+.. +.+...|..+...|...|++++|...|++. .. +.+..+|..+..++...|+
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELN---PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHhhhccccc---hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 345667888888888888887642 346777888888888888888888888876 22 3456788888888888899
Q ss_pred chHHHHHHHHHhccCCCCCchHHHHHHHH--hhcCCcHHHHHH
Q 006705 447 VDIGEFVGQRLMEIEPENAGNYVILSNLY--ASAGRWEDVTRV 487 (634)
Q Consensus 447 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~ 487 (634)
+++|...++++.++.|+++..+..+..+. ...+.+++|...
T Consensus 94 ~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99998889999999998877776665553 233445555543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=4.1e-05 Score=66.68 Aligned_cols=139 Identities=12% Similarity=-0.013 Sum_probs=75.4
Q ss_pred HHHHcCCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHH
Q 006705 101 VFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180 (634)
Q Consensus 101 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 180 (634)
..+...|+++.|.+.|+++..++..+|..+...|...|++++|++.|++.++.. +-+...|..+..++...|++++|..
T Consensus 13 ~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~~ 91 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIK 91 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHHH
Confidence 344556667777777766666666666666666666677766666666666532 1134455555556666666666666
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCc
Q 006705 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE-RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257 (634)
Q Consensus 181 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 257 (634)
.++..++.. +.+... .|...|. ... ....++..+..+|.+.|++++|.+.|.........
T Consensus 92 ~~~kAl~~~-~~n~~~------~~~~~~~----------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 92 DLKEALIQL-RGNQLI------DYKILGL----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHTT-TTCSEE------ECGGGTB----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHhC-ccCchH------HHHHhhh----------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 666555421 111000 0000000 000 01123445666777778888888777777654333
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.09 E-value=5.8e-06 Score=72.91 Aligned_cols=115 Identities=10% Similarity=-0.126 Sum_probs=74.0
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 006705 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEP-TAAILGSL 437 (634)
Q Consensus 360 pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 437 (634)
|+...+......+.+.|++++|+..|+..++. -+.+...|..+..+|.+.|++++|+..|++. .+.| +..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~---~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHH
Confidence 55555556666667777777777777766643 1335666777777777777777777777665 3344 35567777
Q ss_pred HHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhh
Q 006705 438 LGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS 477 (634)
Q Consensus 438 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 477 (634)
..++...|+++.|...+++++++.|++...+...+..+..
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~ 118 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 118 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 7777777777777777777777777655444444444433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=1e-05 Score=68.34 Aligned_cols=93 Identities=13% Similarity=0.054 Sum_probs=83.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcC
Q 006705 402 YGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479 (634)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 479 (634)
+......|.+.|++++|+..|++. .. +.+...|..+...+...|+++.|...++++++++|++..+|..++.+|...|
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 344566788999999999999987 22 3467889999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhhC
Q 006705 480 RWEDVTRVRELMKEK 494 (634)
Q Consensus 480 ~~~~A~~~~~~m~~~ 494 (634)
++++|.+.+++....
T Consensus 93 ~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 93 KFRAALRDYETVVKV 107 (159)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999999764
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=1.1e-05 Score=64.45 Aligned_cols=103 Identities=12% Similarity=-0.088 Sum_probs=73.0
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCH---HHHHHHHHhC-CCCCCH---HHHHHHH
Q 006705 366 LAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV---GEALEFIKNM-PFEPTA---AILGSLL 438 (634)
Q Consensus 366 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m-~~~p~~---~~~~~ll 438 (634)
..+++.+...+++++|.+.|+..... -+.++.++..+..++.+.++. ++|+.+++++ ...|+. .+|..|.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~---~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA---GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 35666777777888888888888753 244667777777777765544 4588888775 333332 3567778
Q ss_pred HHHHhcCCchHHHHHHHHHhccCCCCCchHHHH
Q 006705 439 GACRVHYNVDIGEFVGQRLMEIEPENAGNYVIL 471 (634)
Q Consensus 439 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 471 (634)
.+|...|+++.|...++++++++|++..+...+
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~ 112 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE 112 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 888888899999999999999999876554433
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.83 E-value=0.013 Score=54.74 Aligned_cols=273 Identities=11% Similarity=0.041 Sum_probs=128.1
Q ss_pred HHHHHHHHcCCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcH
Q 006705 97 TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFE 176 (634)
Q Consensus 97 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 176 (634)
..+.+.+-+.|.++.|..++..+.. |..++..+.+.+++..|++++.... +..+|..+..+|.......
T Consensus 18 ~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~~~e~~ 86 (336)
T d1b89a_ 18 QQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFR 86 (336)
T ss_dssp -----------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHHhCcHHH
Confidence 3444555556666666666655443 5556666666666666666554331 3345555555555544433
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 006705 177 LGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP---ERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253 (634)
Q Consensus 177 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 253 (634)
.+ .+.......++.....++..|-..|..++...+++... ..+...++-++..|++.+ .++.++.++..
T Consensus 87 la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~-- 158 (336)
T d1b89a_ 87 LA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELF-- 158 (336)
T ss_dssp HH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHH--
T ss_pred HH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhc--
Confidence 22 11122223344444566777777777777777776532 235556667777777654 33333333222
Q ss_pred cCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHH
Q 006705 254 EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAML 333 (634)
Q Consensus 254 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li 333 (634)
. +..-..-++..|-..+-++ -++-.|.+.|.++.|..+.-.-. +++......+
T Consensus 159 -s---~~y~~~k~~~~c~~~~l~~----------------------elv~Ly~~~~~~~~A~~~~i~~~-~~~~~~~~f~ 211 (336)
T d1b89a_ 159 -W---SRVNIPKVLRAAEQAHLWA----------------------ELVFLYDKYEEYDNAIITMMNHP-TDAWKEGQFK 211 (336)
T ss_dssp -S---TTSCHHHHHHHHHTTTCHH----------------------HHHHHHHHTTCHHHHHHHHHHST-TTTCCHHHHH
T ss_pred -c---ccCCHHHHHHHHHHcCChH----------------------HHHHHHHhcCCHHHHHHHHHHcc-hhhhhHHHHH
Confidence 1 1122233344444433332 34444555566655544432211 1111222233
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHH-------------HHHHhccCcHHHHHHHHHHhhhccCCccCChH
Q 006705 334 VGYSKHGMGREVVELFNLMREENKVKPDSVTYLAV-------------LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIE 400 (634)
Q Consensus 334 ~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~l-------------l~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 400 (634)
..+.+..+.+...++.....+. .|+. .+.+ +.-+.+.+++.....+++..... + +..
T Consensus 212 e~~~k~~N~e~~~~~i~~yL~~---~p~~--i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~--n---~~~ 281 (336)
T d1b89a_ 212 DIITKVANVELYYRAIQFYLEF---KPLL--LNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNH--N---NKS 281 (336)
T ss_dssp HHHHHCSSTHHHHHHHHHHHHH---CGGG--HHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTT--C---CHH
T ss_pred HHHHccCChHHHHHHHHHHHHc---CHHH--HHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHc--C---hHH
Confidence 4444444444433333333222 1221 1222 33334445555555555554432 2 346
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC
Q 006705 401 HYGCVVDMLGRAGRVGEALEFIKNM 425 (634)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~m 425 (634)
+.++|.+.|...++++.-.+.++.-
T Consensus 282 vn~al~~lyie~~d~~~l~~~i~~~ 306 (336)
T d1b89a_ 282 VNESLNNLFITEEDYQALRTSIDAY 306 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcchhHHHHHHHHHh
Confidence 7788888888888776666655553
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.82 E-value=0.011 Score=55.36 Aligned_cols=282 Identities=11% Similarity=0.008 Sum_probs=161.4
Q ss_pred CCCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCCCCcchHHHHHHHH
Q 006705 55 EMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAY 134 (634)
Q Consensus 55 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 134 (634)
.||..--..+..-|-+.|.++.|..++..+. -|..++..|.+.++++.|.+++.+.. +..+|..+...+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l 79 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFAC 79 (336)
T ss_dssp CC----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHH
Confidence 4677777788888999999999999997553 36778888899999999999887664 566899999999
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHH
Q 006705 135 SQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214 (634)
Q Consensus 135 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 214 (634)
.+......| .+.......+......++..+-..|.+++...+++..+.. -..+..+++-|+..|++.+. ++-.
T Consensus 80 ~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~kl~ 152 (336)
T d1b89a_ 80 VDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-QKMR 152 (336)
T ss_dssp HHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-HHHH
T ss_pred HhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-HHHH
Confidence 888766443 2223334456666778889999999999988888877543 25567788899999998764 4444
Q ss_pred HHHccCCCC-C----------hhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHH
Q 006705 215 GVFECLPER-D----------VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283 (634)
Q Consensus 215 ~~~~~m~~~-~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~ 283 (634)
+.+.....+ | ...|..++-.|.+.|++++|+.+. .. -.++..-....+..+.+..+.+...++.
T Consensus 153 e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~--~~~~~~~~~~f~e~~~k~~N~e~~~~~i 227 (336)
T d1b89a_ 153 EHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MN--HPTDAWKEGQFKDIITKVANVELYYRAI 227 (336)
T ss_dssp HHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HH--STTTTCCHHHHHHHHHHCSSTHHHHHHH
T ss_pred HHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HH--cchhhhhHHHHHHHHHccCChHHHHHHH
Confidence 444433221 1 123445555555555555554432 22 1344444455566666666666666666
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHH
Q 006705 284 SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363 (634)
Q Consensus 284 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~ 363 (634)
...++.. +...+.|+......-+.....+.| -+.++..-....++..... + +..
T Consensus 228 ~~yL~~~----p~~i~~lL~~v~~~~d~~r~V~~~------------------~k~~~l~li~p~Le~v~~~-n---~~~ 281 (336)
T d1b89a_ 228 QFYLEFK----PLLLNDLLMVLSPRLDHTRAVNYF------------------SKVKQLPLVKPYLRSVQNH-N---NKS 281 (336)
T ss_dssp HHHHHHC----GGGHHHHHHHHGGGCCHHHHHHHH------------------HHTTCTTTTHHHHHHHHTT-C---CHH
T ss_pred HHHHHcC----HHHHHHHHHHhccCCCHHHHHHHH------------------HhcCCcHHHHHHHHHHHHc-C---hHH
Confidence 6555431 223344444444444444444443 3344444444555444433 2 234
Q ss_pred HHHHHHHHHhccCcHHHHHHHH
Q 006705 364 TYLAVLSGCSHGGMEDRGLAVF 385 (634)
Q Consensus 364 t~~~ll~a~~~~g~~~~a~~~~ 385 (634)
..+++...|...++++.-++..
T Consensus 282 vn~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 282 VNESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCcchhHHHHHHH
Confidence 5566666666666655444333
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=0.00015 Score=61.55 Aligned_cols=62 Identities=6% Similarity=-0.104 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 433 ILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 433 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
+|+.+..+|.+.|+++.|...++++++++|+++.+|..++.+|...|++++|...++...+.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 45566677888888888888888888888888888888888888888888888888888653
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=0.00012 Score=62.26 Aligned_cols=133 Identities=9% Similarity=-0.015 Sum_probs=93.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHH
Q 006705 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407 (634)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~ 407 (634)
.+......+.+.|++++|+..|++........+.. .... ......+ ...+|+.+..
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~--------------~~~~-~~~~~~~---------~~~~~~nla~ 70 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF--------------SNEE-AQKAQAL---------RLASHLNLAM 70 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC--------------CSHH-HHHHHHH---------HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcccc--------------chHH-Hhhhchh---------HHHHHHHHHH
Confidence 44455567777888888888888776641111110 0000 0111111 1235777888
Q ss_pred HHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHH
Q 006705 408 MLGRAGRVGEALEFIKNM-PFE-PTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDV 484 (634)
Q Consensus 408 ~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 484 (634)
+|.+.|++++|+..+++. ... .++..|..+..++...|+++.|...++++++++|+++.....+..+..+.+...+.
T Consensus 71 ~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 71 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999876 323 47788889999999999999999999999999999998888888887666655543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.74 E-value=0.0026 Score=57.88 Aligned_cols=227 Identities=7% Similarity=-0.093 Sum_probs=125.5
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhc----ccchHHHHHHHHHHHHcCCCCchhHHH
Q 006705 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG----LAALGHGKQVHSHVLRFEIPSYVVLQN 299 (634)
Q Consensus 224 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~i~~~~~~~~~~~~~~~~~ 299 (634)
|+..|..+...+.+.+++++|++.|++..+.| |...+..+-..+.. ..+...+...+....+.+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--------- 68 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 68 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---------
Confidence 45566777777778888888888888887765 22333333333322 334445555554444433
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHH--Hh
Q 006705 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK----HGMGREVVELFNLMREENKVKPDSVTYLAVLSG--CS 373 (634)
Q Consensus 300 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a--~~ 373 (634)
+...+..+...+.. ..+.+.|...++..... |..+.. ........ ..
T Consensus 69 -------------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~-g~~~a~-~~l~~~~~~~~~ 121 (265)
T d1ouva_ 69 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-KYAEGC-ASLGGIYHDGKV 121 (265)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHH-HHHHHHHHHCSS
T ss_pred -------------------------ccchhhccccccccccccchhhHHHHHHHhhhhhh-hhhhHH-HhhcccccCCCc
Confidence 22222222222222 33455666666665554 322111 11111111 12
Q ss_pred ccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 006705 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR----AGRVGEALEFIKNMPFEPTAAILGSLLGACRV----HY 445 (634)
Q Consensus 374 ~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~ 445 (634)
.......+...+..... ..+...+..|...|.. ..+...+...++......+......|...+.. ..
T Consensus 122 ~~~~~~~a~~~~~~~~~-----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~ 196 (265)
T d1ouva_ 122 VTRDFKKAVEYFTKACD-----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 196 (265)
T ss_dssp SCCCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred ccchhHHHHHHhhhhhc-----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCccccc
Confidence 23345555555555443 2345556666666664 34555666666554223455555555544443 45
Q ss_pred CchHHHHHHHHHhccCCCCCchHHHHHHHHhh----cCCcHHHHHHHHHHhhCCC
Q 006705 446 NVDIGEFVGQRLMEIEPENAGNYVILSNLYAS----AGRWEDVTRVRELMKEKAV 496 (634)
Q Consensus 446 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 496 (634)
+.+.|...++++.+.+. +..+..|+.+|.+ ..+.++|.+.|++..+.|.
T Consensus 197 d~~~A~~~~~~aa~~g~--~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 197 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred chhhhhhhHhhhhcccC--HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 78888888888877753 5677888888875 3378889999998877764
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.70 E-value=0.00029 Score=58.46 Aligned_cols=63 Identities=10% Similarity=-0.050 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 432 AILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 432 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
.++..+..++...|+++.|...++++++++|.++.+|..++.+|...|++++|...|+...+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356667788888999999999999999999999999999999999999999999999888653
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.64 E-value=7.5e-05 Score=60.05 Aligned_cols=92 Identities=10% Similarity=0.074 Sum_probs=73.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCc-------hHHHHH
Q 006705 402 YGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAG-------NYVILS 472 (634)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 472 (634)
+..+.+.|.+.|++++|+..|.+. .. +.+...|..+..+|...|+++.|...++++++++|+++. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 445677888889999999888876 22 346778888889999999999999999999988887665 455677
Q ss_pred HHHhhcCCcHHHHHHHHHHhh
Q 006705 473 NLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 473 ~~~~~~g~~~~A~~~~~~m~~ 493 (634)
..+...+++++|.+.++....
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 778888899999999987753
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.61 E-value=0.00031 Score=59.37 Aligned_cols=93 Identities=11% Similarity=-0.037 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhh
Q 006705 400 EHYGCVVDMLGRAGRVGEALEFIKNM-P-FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS 477 (634)
Q Consensus 400 ~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 477 (634)
..|+.+..+|.+.|++++|+..+++. . .+.+..+|..+..++...|++++|...++++++++|+++.+...+..+..+
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35667788889999999999999886 2 245778888899999999999999999999999999998888888877766
Q ss_pred cCCcH-HHHHHHHHHh
Q 006705 478 AGRWE-DVTRVRELMK 492 (634)
Q Consensus 478 ~g~~~-~A~~~~~~m~ 492 (634)
.+... ...+++..|-
T Consensus 145 ~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 145 AKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH
Confidence 66543 3555555554
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.60 E-value=0.00019 Score=55.94 Aligned_cols=89 Identities=7% Similarity=-0.044 Sum_probs=58.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHH
Q 006705 331 AMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLG 410 (634)
Q Consensus 331 ~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~ 410 (634)
.+...+.+.|++++|+..|++..+. -+-+...|..+..++.+.|++++|...|+...+. -+.+...+..+...|.
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~a~~~la~~y~ 95 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARML---DPKDIAVHAALAVSHT 95 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhccccccccc---ccccccchHHHHHHHH
Confidence 3455566677777777777777665 1224566666666777777777777777777643 1334666777777777
Q ss_pred HcCCHHHHHHHHHh
Q 006705 411 RAGRVGEALEFIKN 424 (634)
Q Consensus 411 ~~g~~~~A~~~~~~ 424 (634)
..|++++|.+.+++
T Consensus 96 ~~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 96 NEHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHH
Confidence 77777777776664
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.55 E-value=0.00054 Score=54.14 Aligned_cols=95 Identities=8% Similarity=-0.052 Sum_probs=60.0
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH---HHHHHHHhhcCCCC-----hhhHHHHHHHH
Q 006705 265 SVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSL---TYSRRVFDNMSERT-----VISWNAMLVGY 336 (634)
Q Consensus 265 ~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~f~~m~~~~-----~~~~~~li~~~ 336 (634)
.+++.+...+++++|++.|...++.+ +.++.++..+..++.+.++. ++|..+|+++...+ ..+|..+..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45566666677777777777777665 45566666666666654443 35777777665422 12555667777
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCCHH
Q 006705 337 SKHGMGREVVELFNLMREENKVKPDSV 363 (634)
Q Consensus 337 ~~~g~~~~A~~~~~~m~~~~g~~pd~~ 363 (634)
.+.|++++|++.|+++.+. .|+..
T Consensus 83 ~~~g~~~~A~~~~~~aL~~---~P~~~ 106 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT---EPQNN 106 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH---CTTCH
T ss_pred HHHhhhHHHHHHHHHHHHh---CcCCH
Confidence 7777777777777777764 45543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.54 E-value=0.00027 Score=59.90 Aligned_cols=131 Identities=8% Similarity=-0.051 Sum_probs=89.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCc-cCChHHHHHHHH
Q 006705 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF-EPEIEHYGCVVD 407 (634)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-~p~~~~~~~li~ 407 (634)
+......+.+.|++++|++.|.+..+. .+.. ....... ... .+ +.....|..+..
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~---~~~~----------~~~~~~~-------~~~----~~~~~~~~~~~nla~ 85 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRY---VEGS----------RAAAEDA-------DGA----KLQPVALSCVLNIGA 85 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHH----------HHHSCHH-------HHG----GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---hhhh----------hhhhhhH-------HHH----HhChhhHHHHHHHHH
Confidence 444556677788888888888776542 0000 0000000 000 11 124556777888
Q ss_pred HHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHH
Q 006705 408 MLGRAGRVGEALEFIKNM-PFE-PTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWED 483 (634)
Q Consensus 408 ~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 483 (634)
+|.+.|++++|+..+.+. ... .+...|..+..++...|+++.|...++++++++|++...+..|..++.+.....+
T Consensus 86 ~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 86 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999998886 333 4577888899999999999999999999999999988877777766655444333
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.48 E-value=0.00025 Score=60.59 Aligned_cols=114 Identities=9% Similarity=-0.074 Sum_probs=82.4
Q ss_pred HHHhccCcHHHHHHHHHHhhhccCCccC-ChHHHHHHHHHHHHcCCH-HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc
Q 006705 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEP-EIEHYGCVVDMLGRAGRV-GEALEFIKNMPFEPTAAILGSLLGACRVHYNV 447 (634)
Q Consensus 370 ~a~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~ 447 (634)
......|++++|.+.|......++|-.. +.. .+.+ .....-++. .....+..+..++...|++
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~-----------~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~ 83 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREWRGPVLDDLR-----------DFQFVEPFATALVE----DKVLAHTAKAEAEIACGRA 83 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-----------TSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccccccCc-----------chHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCc
Confidence 4577888999999988888865433110 100 0000 000111111 1234677888999999999
Q ss_pred hHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhh-----CCCcc
Q 006705 448 DIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE-----KAVTK 498 (634)
Q Consensus 448 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~ 498 (634)
++|...++++++.+|.+...|..++.+|.+.|++++|.+.|+++.+ .|+.|
T Consensus 84 ~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P 139 (179)
T d2ff4a2 84 SAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP 139 (179)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred hHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999999999999999999999743 46654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.46 E-value=0.035 Score=49.90 Aligned_cols=95 Identities=15% Similarity=-0.016 Sum_probs=66.0
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHccCCC-CChhhHHHHHHHHHh----cCChHHHHHHHHHHhhcCCccChhhHHHHH
Q 006705 193 HIYVGSSLLDMYAKAGRIHEARGVFECLPE-RDVVSCTAIISGYAQ----LGLDEEAIELFRKLQVEGMISNYVTYASVL 267 (634)
Q Consensus 193 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 267 (634)
|+..+..|...+.+.|++++|.+.|++..+ .|..++..|...|.. ..+...|...+......+. |. ....+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~-~~--a~~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY-SN--GCHLLG 77 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-HH--HHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc-cc--hhhccc
Confidence 345666788888899999999999998754 467777777777776 5678889888888777652 22 222222
Q ss_pred HHHh----cccchHHHHHHHHHHHHcC
Q 006705 268 TALS----GLAALGHGKQVHSHVLRFE 290 (634)
Q Consensus 268 ~~~~----~~~~~~~a~~i~~~~~~~~ 290 (634)
..+. ...+.+.+...+....+.|
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g 104 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLK 104 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred cccccccccchhhHHHHHHHhhhhhhh
Confidence 2222 2456777888888777766
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.43 E-value=0.0012 Score=55.66 Aligned_cols=62 Identities=8% Similarity=-0.070 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 433 ILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 433 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
.+..+..++...|++++|...++++++++|.+..+|..++.+|...|++++|.+.++...+.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45556678899999999999999999999999999999999999999999999999998764
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.41 E-value=0.00091 Score=55.33 Aligned_cols=126 Identities=9% Similarity=-0.078 Sum_probs=88.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHH
Q 006705 327 ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV 406 (634)
Q Consensus 327 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li 406 (634)
..+......+.+.|++.+|+..|.+.... . |... ...-.... .... .....+|+.+.
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~-~~~~-----------~~~~~~~~---~~~~------~~~~~~~~Nla 74 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDF--F-IHTE-----------EWDDQILL---DKKK------NIEISCNLNLA 74 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--T-TTCT-----------TCCCHHHH---HHHH------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--C-cchh-----------hhhhHHHH---Hhhh------hHHHHHHhhHH
Confidence 45666677788888888888888887764 1 1100 00000000 0000 11234677788
Q ss_pred HHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHH
Q 006705 407 DMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLY 475 (634)
Q Consensus 407 ~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 475 (634)
.+|.+.|++++|++.+.+. .. +.+..+|..+..++...|+++.|...++++++++|++......+..+.
T Consensus 75 ~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 75 TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 8999999999999999886 22 346789999999999999999999999999999999877766554443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.41 E-value=1.6e-05 Score=80.88 Aligned_cols=110 Identities=7% Similarity=-0.083 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 006705 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEP-TAAILGSLLGA 440 (634)
Q Consensus 363 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 440 (634)
..+..+...+.+.|+.++|...+...... .| ...+..|.+.+...|++++|...|++. ...| +...|+.|...
T Consensus 121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~ 195 (497)
T d1ya0a1 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSY----IC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAIL 195 (497)
T ss_dssp ----------------------CCHHHHH----HH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHH
T ss_pred HHHHHhHHHHHhCCCHHHHHHHHHHHhCC----CH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 44445555555666666666555444321 11 234555666666666666666666664 2223 34566666666
Q ss_pred HHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhh
Q 006705 441 CRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS 477 (634)
Q Consensus 441 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 477 (634)
+...|+..+|...+.+++...|+.+.++..|..++.+
T Consensus 196 ~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 196 ASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666655544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.33 E-value=0.00031 Score=59.48 Aligned_cols=65 Identities=8% Similarity=-0.038 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 430 TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 430 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
+...|..+..++.+.|++++|...+.++++++|+++.+|..++.+|...|++++|.+.++...+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34467778888999999999999999999999999999999999999999999999999999764
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.28 E-value=0.00085 Score=53.55 Aligned_cols=94 Identities=7% Similarity=0.021 Sum_probs=60.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCC-----hHHHH
Q 006705 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE-----IEHYG 403 (634)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~-----~~~~~ 403 (634)
+-.+...|.+.|++++|++.|.+..+. -+.+...+..+..+|...|++++|...++.+++..+. .+. ..+|.
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~-~~~~~~~~a~~~~ 83 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE-NREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-STTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 344556677777777777777777765 2345566777777777777777777777776643100 011 23566
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC
Q 006705 404 CVVDMLGRAGRVGEALEFIKNM 425 (634)
Q Consensus 404 ~li~~~~~~g~~~~A~~~~~~m 425 (634)
.+...+...+++++|++.|.+.
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~ka 105 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKS 105 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHH
Confidence 6666777777777777777653
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.25 E-value=0.00013 Score=73.96 Aligned_cols=113 Identities=9% Similarity=-0.077 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Q 006705 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSERT-VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373 (634)
Q Consensus 295 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~ 373 (634)
...+..+...+.+.|+.+.|...+.....++ ..++..+...+...|++++|+..|++..+. .+-+..+|+.+...+.
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~ 197 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILAS 197 (497)
T ss_dssp -----------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHH
Confidence 3444555555556666666555544433222 134455555566666666666666666554 1222356666666666
Q ss_pred ccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHc
Q 006705 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA 412 (634)
Q Consensus 374 ~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 412 (634)
..|+..+|...|.+.... -+|-...+..|...|.+.
T Consensus 198 ~~~~~~~A~~~y~ral~~---~~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 198 SKGDHLTTIFYYCRSIAV---KFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HTTCHHHHHHHHHHHHSS---SBCCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhC---CCCCHHHHHHHHHHHHHh
Confidence 666666666666666542 244555566665555443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.10 E-value=0.00082 Score=55.82 Aligned_cols=62 Identities=10% Similarity=-0.053 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHhccCC-------CC----CchHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 432 AILGSLLGACRVHYNVDIGEFVGQRLMEIEP-------EN----AGNYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 432 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p-------~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
..|+.+..++...|++++|...+++.+++.| +. ...|..++.+|...|++++|.+.|++..+
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666554322 21 22567889999999999999999999764
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.85 E-value=0.00071 Score=55.39 Aligned_cols=128 Identities=10% Similarity=0.039 Sum_probs=68.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcc----------CcHHHHHHHHHHhhhccCCccCChHHHHHH
Q 006705 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG----------GMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405 (634)
Q Consensus 336 ~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~----------g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 405 (634)
|-+.+.+++|++.|+...+. -+-|..++..+..++... +.+++|...|+.+.+.. +.+...|..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~---P~~~~a~~~l 81 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID---PKKDEAVWCI 81 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc---chhhHHHhhH
Confidence 34455666777777766664 233334555555554432 23345555555555321 2234455555
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHH
Q 006705 406 VDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVT 485 (634)
Q Consensus 406 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 485 (634)
..+|...|++. ++... ..++++.|...++++++++|++...+..|... ..|.
T Consensus 82 G~~y~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~ 133 (145)
T d1zu2a1 82 GNAYTSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAP 133 (145)
T ss_dssp HHHHHHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHH
T ss_pred HHHHHHcccch------------hhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHH
Confidence 55444333211 11110 01235778889999999999986555555433 4666
Q ss_pred HHHHHHhhCCC
Q 006705 486 RVRELMKEKAV 496 (634)
Q Consensus 486 ~~~~~m~~~~~ 496 (634)
+++.+..++|+
T Consensus 134 ~~~~e~~k~~~ 144 (145)
T d1zu2a1 134 QLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHSSS
T ss_pred HHHHHHHHHhc
Confidence 67766666654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.76 E-value=0.0012 Score=59.98 Aligned_cols=125 Identities=10% Similarity=-0.025 Sum_probs=73.0
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCC-hHHHHHHHHHHHHcCCH
Q 006705 337 SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE-IEHYGCVVDMLGRAGRV 415 (634)
Q Consensus 337 ~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~ 415 (634)
.+.|++++|++.+++..+. -+-|...+..+...++..|++++|...++...+. .|+ ...+..+..++...+..
T Consensus 7 L~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l----~P~~~~~~~~l~~ll~a~~~~ 80 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL----FPEYLPGASQLRHLVKAAQAR 80 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHhcccc
Confidence 3467777777777777765 3445567777777777777777777777777643 343 34444444444444444
Q ss_pred HHHHHHHHhC--CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCch
Q 006705 416 GEALEFIKNM--PFEPT-AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGN 467 (634)
Q Consensus 416 ~~A~~~~~~m--~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 467 (634)
+++..-.... ...|+ ...+......+...|+.++|...++++.+..|..+..
T Consensus 81 ~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 81 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence 4433322221 11222 2223333455666777777777777777777765543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.75 E-value=0.0023 Score=47.70 Aligned_cols=73 Identities=14% Similarity=0.075 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHH
Q 006705 400 EHYGCVVDMLGRAGRVGEALEFIKNM----P----FEPT-AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVI 470 (634)
Q Consensus 400 ~~~~~li~~~~~~g~~~~A~~~~~~m----~----~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 470 (634)
+.+-.+...+.+.|++++|...|++. + ..++ ..++..|..++.+.|++++|...++++++++|+++.++..
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N 85 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence 34445666777777777777777654 1 1122 4567778888888899999999999999999988777666
Q ss_pred HH
Q 006705 471 LS 472 (634)
Q Consensus 471 l~ 472 (634)
+.
T Consensus 86 l~ 87 (95)
T d1tjca_ 86 LK 87 (95)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.64 E-value=0.00061 Score=55.82 Aligned_cols=50 Identities=12% Similarity=0.092 Sum_probs=41.6
Q ss_pred CCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCC-----------cHHHHHHHHHHhhC
Q 006705 445 YNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR-----------WEDVTRVRELMKEK 494 (634)
Q Consensus 445 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~~ 494 (634)
+.+++|...++++++++|+++.+|..++.+|...|+ +++|.+.|++..+.
T Consensus 55 ~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 55 QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc
Confidence 345688999999999999999999999999988764 57788888887653
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.63 E-value=0.013 Score=49.47 Aligned_cols=73 Identities=11% Similarity=0.145 Sum_probs=49.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhc----cCCccCChHH
Q 006705 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC----KDGFEPEIEH 401 (634)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~----~~~~~p~~~~ 401 (634)
+..+..+...+...|++++|+..++++... -+-+...|..++.++...|+.++|++.|+.+.+. . |+.|...+
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~--~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eL-G~~P~~~l 143 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDL-GIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH-SCCCCHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh-CCCcCHHH
Confidence 345666777777777777777777777765 3445677777777777777777777777766331 2 67776554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.42 E-value=0.0015 Score=59.46 Aligned_cols=119 Identities=13% Similarity=0.061 Sum_probs=82.0
Q ss_pred hccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHH
Q 006705 373 SHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPT-AAILGSLLGACRVHYNVDIG 450 (634)
Q Consensus 373 ~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a 450 (634)
.+.|++++|+..+++.++. -+.+...+..|+..|+..|++++|.+.++.. ...|+ ...+..+...+...+..+++
T Consensus 7 L~~G~l~eAl~~l~~al~~---~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKA---SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHT---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 4679999999999999974 3557899999999999999999999999987 33454 44454444444333322222
Q ss_pred HHHHHHHhc-cCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 451 EFVGQRLME-IEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 451 ~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
......... .+|++...+...+..+...|+.++|.+.+....+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 111111111 23333344556677889999999999999998765
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.28 E-value=0.01 Score=48.72 Aligned_cols=63 Identities=11% Similarity=-0.016 Sum_probs=37.7
Q ss_pred hHHHH--HHHHHhcCChHHHHHHHHHHHHcCCCCCC----------HHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 006705 328 SWNAM--LVGYSKHGMGREVVELFNLMREENKVKPD----------SVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390 (634)
Q Consensus 328 ~~~~l--i~~~~~~g~~~~A~~~~~~m~~~~g~~pd----------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 390 (634)
+|..+ ...+.+.|++++|++.|++..+...-.|+ ...|+.+..++.+.|++++|...++...+
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~ 83 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 83 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhh
Confidence 44545 33455668888888888777653111122 24566666667777777777666666553
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.69 E-value=0.28 Score=37.06 Aligned_cols=141 Identities=13% Similarity=0.053 Sum_probs=97.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCH
Q 006705 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415 (634)
Q Consensus 336 ~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 415 (634)
+.-.|..++..++..+.... .+..-|+-++.-....-+-+...+.++.+-+-+ .+. +|+++
T Consensus 12 ~ildG~ve~Gveii~k~~~s----s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~F-Dls--------------~C~Nl 72 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS----STKSEYNWFICNLLESIDCRYMFQVLDKIGSYF-DLD--------------KCQNL 72 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH----SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS-CGG--------------GCSCT
T ss_pred HHHhhhHHhHHHHHHHHccc----CCccccceeeeecccccchHHHHHHHHHHhhhc-Cch--------------hhhcH
Confidence 44467777888887777665 244445555544444455555666666665433 322 35666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCC
Q 006705 416 GEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495 (634)
Q Consensus 416 ~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 495 (634)
......+-.+. .+...+..-+......|.-+.-+.+...+++-+..+++...-++++|.+.|...++.+++.+..++|
T Consensus 73 k~vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 73 KSVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 66666665553 3444556677888888988888888888777655568888999999999999999999999999999
Q ss_pred Cc
Q 006705 496 VT 497 (634)
Q Consensus 496 ~~ 497 (634)
++
T Consensus 151 ~K 152 (161)
T d1wy6a1 151 EK 152 (161)
T ss_dssp CH
T ss_pred HH
Confidence 75
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.96 E-value=0.02 Score=42.21 Aligned_cols=62 Identities=11% Similarity=-0.071 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhccCCCC-------CchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 433 ILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN-------AGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 433 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
.+-.+...+...|+++.|...+++++++.|.+ ..++..|+.+|.+.|++++|.+.++++.+.
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 34457788899999999999999998876543 346888999999999999999999999764
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=92.47 E-value=4.8 Score=38.42 Aligned_cols=116 Identities=9% Similarity=-0.019 Sum_probs=61.2
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHH-H-HHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHH
Q 006705 340 GMGREVVELFNLMREENKVKPDSVT-Y-LAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417 (634)
Q Consensus 340 g~~~~A~~~~~~m~~~~g~~pd~~t-~-~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 417 (634)
.+.+.|..++..........++... . ..+.......+..+.+..++...... ..+.....-++....+.+++..
T Consensus 228 ~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~w~~~~al~~~~~~~ 303 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR----SQSTSLIERRVRMALGTGDRRG 303 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT----CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc----ccchHHHHHHHHHHHHcCChHH
Confidence 4566777777666654222222211 1 11222233445566666666665543 2233333444455556677777
Q ss_pred HHHHHHhCCCCCCH-HHH-HHHHHHHHhcCCchHHHHHHHHHhc
Q 006705 418 ALEFIKNMPFEPTA-AIL-GSLLGACRVHYNVDIGEFVGQRLME 459 (634)
Q Consensus 418 A~~~~~~m~~~p~~-~~~-~~ll~~~~~~~~~~~a~~~~~~~~~ 459 (634)
+...|..|+..|.. .-| -=+..+....|+.+.|...+..+..
T Consensus 304 ~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 77777777432221 112 1233566677777777777777654
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=91.01 E-value=1.5 Score=33.69 Aligned_cols=74 Identities=12% Similarity=0.062 Sum_probs=34.9
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh----cCCHHHHH
Q 006705 139 HSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAK----AGRIHEAR 214 (634)
Q Consensus 139 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~ 214 (634)
++++|+.+|++..+.|. ......+. .....+.++|.+.+....+.| ++.....|..+|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~---~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE---MFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTC---TTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCC---hhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 45666666666665542 12222221 223345566666666665554 23333334444433 23344555
Q ss_pred HHHccC
Q 006705 215 GVFECL 220 (634)
Q Consensus 215 ~~~~~m 220 (634)
+.|++.
T Consensus 80 ~~~~~a 85 (133)
T d1klxa_ 80 QYYSKA 85 (133)
T ss_dssp HHHHHH
T ss_pred HHHhhh
Confidence 554443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=90.86 E-value=2.4 Score=31.84 Aligned_cols=84 Identities=7% Similarity=-0.058 Sum_probs=57.3
Q ss_pred hcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHH
Q 006705 206 KAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSH 285 (634)
Q Consensus 206 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~ 285 (634)
+|+++......+-.+.. +....+..++...++|+-++-.++++.+.+.+ +|++.....+..||.+.|+..++.+++.+
T Consensus 68 ~C~Nlk~vv~C~~~~n~-~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ 145 (161)
T d1wy6a1 68 KCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIE 145 (161)
T ss_dssp GCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 34555555544444332 33344556777788888888888888877654 67777777888888888888888888888
Q ss_pred HHHcCC
Q 006705 286 VLRFEI 291 (634)
Q Consensus 286 ~~~~~~ 291 (634)
+-+.|+
T Consensus 146 ACe~G~ 151 (161)
T d1wy6a1 146 ACKKGE 151 (161)
T ss_dssp HHHTTC
T ss_pred HHHHhH
Confidence 877774
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=90.24 E-value=2 Score=33.04 Aligned_cols=115 Identities=6% Similarity=-0.016 Sum_probs=55.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHH
Q 006705 341 MGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420 (634)
Q Consensus 341 ~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 420 (634)
++++|+++|++..+. |. | .....+. .....+.++|..+++...+. | ++.....|..+|..-.
T Consensus 8 d~~~A~~~~~kaa~~-g~-~--~a~~~l~--~~~~~~~~~a~~~~~~aa~~--g---~~~a~~~Lg~~y~~g~------- 69 (133)
T d1klxa_ 8 DLKKAIQYYVKACEL-NE-M--FGCLSLV--SNSQINKQKLFQYLSKACEL--N---SGNGCRFLGDFYENGK------- 69 (133)
T ss_dssp HHHHHHHHHHHHHHT-TC-T--THHHHHH--TCTTSCHHHHHHHHHHHHHT--T---CHHHHHHHHHHHHHCS-------
T ss_pred CHHHHHHHHHHHHHC-CC-h--hhhhhhc--cccccCHHHHHHHHhhhhcc--c---chhhhhhHHHhhhhcc-------
Confidence 456777777777665 42 2 1222222 23345666677776666553 3 3344444444443210
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhh----cCCcHHHHHHHHHHhhCCC
Q 006705 421 FIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS----AGRWEDVTRVRELMKEKAV 496 (634)
Q Consensus 421 ~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 496 (634)
. ...+.+.|...+++..+.. ++.....|..+|.. ..+.++|.+.+++..+.|.
T Consensus 70 -----~----------------~~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 70 -----Y----------------VKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp -----S----------------SCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred -----c----------------cchhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 0 0122334444444444332 23444555555544 2356667777776666554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.10 E-value=1.4 Score=33.33 Aligned_cols=44 Identities=9% Similarity=0.034 Sum_probs=19.5
Q ss_pred HHHHHHHHHhccCCCCC-chHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 449 IGEFVGQRLMEIEPENA-GNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 449 ~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
.|..+++.+.+.+|.+. ..+..|+-+|.+.|++++|.+.++.+.
T Consensus 56 ~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L 100 (124)
T d2pqrb1 56 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 100 (124)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34444444444444322 233444444445555555555444443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.48 E-value=4.4 Score=30.45 Aligned_cols=68 Identities=13% Similarity=-0.003 Sum_probs=38.9
Q ss_pred ChHHHHHHHHHHHHcCC---HHHHHHHHHhC-CCCC-C-HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCC
Q 006705 398 EIEHYGCVVDMLGRAGR---VGEALEFIKNM-PFEP-T-AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENA 465 (634)
Q Consensus 398 ~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p-~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 465 (634)
++.+--.+.-++.++.. +++++.++++. ...| + ...|-.|.-+|.+.|+++.|...++++++++|.+.
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~ 107 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 107 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcH
Confidence 33444444444544432 34555555554 1122 2 23555566677777777777778888888888764
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.18 E-value=2.7 Score=29.90 Aligned_cols=62 Identities=18% Similarity=0.206 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHH
Q 006705 342 GREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407 (634)
Q Consensus 342 ~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~ 407 (634)
.-++.+-+..+... ...|++....+.|.||.+.+++..|.++|+.++.+ ..++...|..+++
T Consensus 22 ~we~rrgmN~l~~~-DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K---~~~~k~~y~yilq 83 (105)
T d1v54e_ 22 AWELRKGMNTLVGY-DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK---AGPHKEIYPYVIQ 83 (105)
T ss_dssp HHHHHHHHHHHTTS-SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---hcCcHHHHHHHHH
Confidence 33555556666666 78899999999999999999999999999988864 3445667777654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.59 E-value=3.5 Score=29.30 Aligned_cols=57 Identities=16% Similarity=0.171 Sum_probs=41.9
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 006705 44 KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIV 101 (634)
Q Consensus 44 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 101 (634)
+.+..+....+.|++....+.|+||.+.+++..|.++++-+.... .++...|..+++
T Consensus 27 rgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilq 83 (105)
T d1v54e_ 27 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 83 (105)
T ss_dssp HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence 345555566788899999999999999999999999988887653 234556665554
|