Citrus Sinensis ID: 006711

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630----

MLHELLLALLGYTGDLIIDEREHQNSAATPLSGDAPISEECSFKLAPDISFIEPSERDLLEKIITLGFYYREIDRFASKARNLSWIRSANASPLERAAELSKSKTERPSVYRRAIANGIVEILSVYRSAVLLIEQKLLSETMPILATVTQGLNKFFVLFPPLYELVLEIERDDIRGGQLLNLLHKRCHCGMPELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIRRQEDRDTEHCSSHSDVSEKLARLSTDYTSVTDWHLGFHIFLDMLPEYIHMRIAESILFAGKAVRVLRNPSSAFRFQDQLITRSSQKIQGVTGRFSIQKEPLLDMKLIGEELLPQSDADKIEAMLQGLKEPSEFHKRSFECAVDSIRAIAASHLWQLVVVRANLNGHLKALKDYFLLEKGDFFQCFLEESRQLMRLPPRQSTAEADLMVPFQLAAIKTISEEDKYFSRVSLRMPSFGITVKSPHVDLLKAKAYADGTSGAALSSGNSDISLDGWDGIALEYSVDWPLQLFFTQEVLSKYCKVFQYLLRLKRTQMELEKSWASVMHQDHTYFAKHRNDRINYSKSQQRRQTCRPMWRVREHMAFLIRNLQFYIQVDVIETQWNILQAHIQESHDFTELVGFHQE

cHHHHHHHHcccccccEEEccccccccccccccccccccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEccccccccccccccHHHHHHHccccccccccccccEEEEcccccccccHHHHHHHHHHcHHHHHccccccccccHHHHHHHHHHcccccccccccccccHHHHHHHHccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcc

cHHHHHHHHccccccEEEEcccccccccccccccccccccccEEEccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccccccccccccccccHccccHHccccHHHccccccHHHccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccHHHHHccccccccHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHccccHHHHHHHHHHHHHHHcccHHHHcHcccccccccccHHHHHcccccccEEEEcccEEEEEEEcHHHcccccEEEEEEEEEcccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcc

MLHELLLALLGYTgdliiderehqnsaatplsgdapiseecsfklapdisfiepsERDLLEKIITLGFYYREIDRFASKARNLSWIRSANASPLERAAELskskterpsvYRRAIANGIVEILSVYRSAVLLIEQKLLSETMPILATVTQGLNKFFVLFPPLYELVLEIerddirggQLLNLLHKRCHCGMPELQACIQRLLWHGHQVMYNQLASWMVYGILQDqhgeffirrqedrdtehcsshsdVSEKLARLStdytsvtdwHLGFHIFLDMLPEYIHMRIAESILFAGKAVRVlrnpssafrfqdqLITRSSQkiqgvtgrfsiqkeplldmkligeellpqsdADKIEAMLQglkepsefhkRSFECAVDSIRAIAASHLWQLVVVRANLNGHLKALKDYFLLEKGDFFQCFLEESrqlmrlpprqstaeadlMVPFQLAAIKTISEEDKYFSRVslrmpsfgitvksphvdllkakayadgtsgaalssgnsdisldgwDGIAleysvdwplqlfFTQEVLSKYCKVFQYLLRLKRTQMELEKSWASVMHQDHTYFAKhrndrinysksqqrrqtCRPMWRVREHMAFLIRNLQFYIQVDVIETQWNILQAHIQEshdftelvgfhqe

MLHELLLALLGYTGDLIIDEREHQNSAATPLSGDAPISEECSFKLAPDISFIEPSERDLLEKIITLGFYYREIDRFASkarnlswirsanaspleraaelskskterpsvyrRAIANGIVEILSVYRSAVLLIEQKLLSETMPILATVTQGLNKFFVLFPPLYELVLEIERDDIRGGQLLNLLHKRCHCGMPELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIRRQEDRDTEHCSSHSDVSEKLARLSTDYTSVTDWHLGFHIFLDMLPEYIHMRIAESILFAGKAVRVLRNPSSafrfqdqlitrssqkiqgvtgrfsiqkepllDMKLIGEELLPQSDADKIEAMLQGLKEPSEFHKRSFECAVDSIRAIAASHLWQLVVVRANLNGHLKALKDYFLLEKGDFFQCFLEESRQLMRLPPRQSTAEADLMVPFQLAAIKTISEEDKYFSRVSLRMpsfgitvksphVDLLKAKAYADGTSGAALSSGNSDISLDGWDGIALEYSVDWPLQLFFTQEVLSKYCKVFQYLLRLKRTQMELEKSWASVMHQDHTYFakhrndrinysksqqrrqtcrPMWRVREHMAFLIRNLQFYIQVDVIETQWNILQAHIQESHDFTELVGFHQE

MlhelllallGYTGDLIIDEREHQNSAATPLSGDAPISEECSFKLAPDISFIEPSERDLLEKIITLGFYYREIDRFASKARNLSWIRSANASPLERAAELSKSKTERPSVYRRAIANGIVEILSVYRSAVLLIEQKLLSETMPILATVTQGLNKFFVLFPPLYELVLEIERDDIRGGQLLNLLHKRCHCGMPELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIRRQEDRDTEHCSSHSDVSEKLARLSTDYTSVTDWHLGFHIFLDMLPEYIHMRIAESILFAGKAVRVLRNPSSAFRFQDQLITRSSQKIQGVTGRFSIQKEPLLDMKLIGEELLPQSDADKIEAMLQGLKEPSEFHKRSFECAVDSIRAIAASHLWQLVVVRANLNGHLKALKDYFLLEKGDFFQCFLEESRQLMRLPPRQSTAEADLMVPFQLAAIKTISEEDKYFSRVSLRMPSFGITVKSPHVDLLKAKAYADGTSGAALSSGNSDISLDGWDGIALEYSVDWPLQLFFTQEVLSKYCKVFQYLLRLKRTQMELEKSWASVMHQDHTYFAKHRNDRINYSKSQQRRQTCRPMWRVREHMAFLIRNLQFYIQVDVIETQWNILQAHIQESHDFTELVGFHQE

***ELLLALLGYTGDLIID*********************CSFKLAPDISFIEPSERDLLEKIITLGFYYREIDRFASKARNLSWIR**********************VYRRAIANGIVEILSVYRSAVLLIEQKLLSETMPILATVTQGLNKFFVLFPPLYELVLEIERDDIRGGQLLNLLHKRCHCGMPELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIR********************ARLSTDYTSVTDWHLGFHIFLDMLPEYIHMRIAESILFAGKAVRVLRNPSSAFRFQDQLITRSSQKIQGVTGRFSIQKEPLLDMKLIGEE**********************FHKRSFECAVDSIRAIAASHLWQLVVVRANLNGHLKALKDYFLLEKGDFFQCFLEESR*************ADLMVPFQLAAIKTISEEDKYFSRVSLRMPSFGITVKSPHVDLLKAKAYADGTSGAAL***NSDISLDGWDGIALEYSVDWPLQLFFTQEVLSKYCKVFQYLLRLKRTQMELEKSWASVMHQDHTYFAKHRNDRINY*******QTCRPMWRVREHMAFLIRNLQFYIQVDVIETQWNILQAHIQESHDFTELVG****

MLHELLLALLGYTGDLIIDEREHQNSAATPLSGDAPISEECSFKLAPDISFIEPSERDLLEKIITLGFYYREIDRFASKARNLSWIRSA***************TERPSVYRRAIANGIVEILSVYRSAVLLIEQKLLSETMPILATVTQGLNKFFVLFPPLYELVLEIERDDIRGGQLLNLLHKRCHCGMPELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIRRQEDR*********DVSEKLARLSTDYTSVTDWHLGFHIFLDMLPEYIHMRIAESILFAGKAVRVLRNPSSAFRFQDQLITRSSQKIQGVTGRFSIQKEPLLDMKLIGEELLPQSDADKIEAMLQGLKEPSEFHKRSFECAVDSIRAIAASHLWQLVVVRANLNGHLKALKDYFLLEKGDFFQCFLEESRQLMR******TAEADLMVPFQLAAIKTISEEDKYFSRVSLRMPSFGITVKSPHV***********************ISLDGWDGIALEYSVDWPLQLFFTQEVLSKYCKVFQYLLRLKRTQMELEKSWASVMHQDHT*****************RRQTCRPMWRVREHMAFLIRNLQFYIQVDVIETQWNILQAHIQESHDFTELVGFH**

MLHELLLALLGYTGDLIIDEREHQNSAATPLSGDAPISEECSFKLAPDISFIEPSERDLLEKIITLGFYYREIDRFASKARNLSWIRSANASP**************PSVYRRAIANGIVEILSVYRSAVLLIEQKLLSETMPILATVTQGLNKFFVLFPPLYELVLEIERDDIRGGQLLNLLHKRCHCGMPELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIRRQ*****************LARLSTDYTSVTDWHLGFHIFLDMLPEYIHMRIAESILFAGKAVRVLRNPSSAFRFQDQLITRSSQKIQGVTGRFSIQKEPLLDMKLIGEELLPQSDADKIEAMLQGLKEPSEFHKRSFECAVDSIRAIAASHLWQLVVVRANLNGHLKALKDYFLLEKGDFFQCFLEESRQLMRLPPRQSTAEADLMVPFQLAAIKTISEEDKYFSRVSLRMPSFGITVKSPHVDLLKAKAYADGTSGAALSSGNSDISLDGWDGIALEYSVDWPLQLFFTQEVLSKYCKVFQYLLRLKRTQMELEKSWASVMHQDHTYFAKHRNDRINY**********RPMWRVREHMAFLIRNLQFYIQVDVIETQWNILQAHIQESHDFTELVGFHQE

MLHELLLALLGYTGDLIIDERE**NSAATPLSGDAPISEECSFKLAPDISFIEPSERDLLEKIITLGFYYREIDRFASKARNLSW********************ERPSVYRRAIANGIVEILSVYRSAVLLIEQKLLSETMPILATVTQGLNKFFVLFPPLYELVLEIERDDIRGGQLLNLLHKRCHCGMPELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIRRQED*************************VTDWHLGFHIFLDMLPEYIHMRIAESILFAGKAVRVLRNPSSAFRFQDQLITRSSQKIQGVTGRFSIQKEPLLDMKLIGEELLPQSDADKIEAMLQGLKEPSEFHKRSFECAVDSIRAIAASHLWQLVVVRANLNGHLKALKDYFLLEKGDFFQCFLEESRQLMRLPPRQSTAEADLMVPFQLAAIKTISEEDKYFSRVSLRMPSFGITVKSPHVDLLKAKAYADGTSGAALSSGNSDISLDGWDGIALEYSVDWPLQLFFTQEVLSKYCKVFQYLLRLKRTQMELEKSWASVMHQDHTYFAKHRNDRINYSKSQQRRQTCRPMWRVREHMAFLIRNLQFYIQVDVIETQWNILQAHIQESHDFTELVGFHQE

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		634	2.2.26 [Sep-21-2011]
Q9M350		745	Gamma-tubulin complex com	yes	no	0.976	0.830	0.749	0.0
Q9SC88		739	Gamma-tubulin complex com	N/A	no	0.962	0.825	0.739	0.0
Q9UGJ1		667	Gamma-tubulin complex com	yes	no	0.851	0.809	0.298	9e-71
Q9D4F8		667	Gamma-tubulin complex com	yes	no	0.847	0.805	0.297	5e-69
Q9VKU7		650	Gamma-tubulin complex com	yes	no	0.764	0.746	0.242	2e-33
Q5R5J6		902	Gamma-tubulin complex com	no	no	0.799	0.562	0.198	1e-19
Q9BSJ2		902	Gamma-tubulin complex com	no	no	0.799	0.562	0.198	3e-19
Q921G8		905	Gamma-tubulin complex com	no	no	0.794	0.556	0.194	2e-18
Q96CW5		907	Gamma-tubulin complex com	no	no	0.564	0.394	0.216	2e-16
P58854		905	Gamma-tubulin complex com	no	no	0.567	0.397	0.223	3e-16

>sp\|Q9M350\|GCP4_ARATH Gamma-tubulin complex component 4 homolog OS=Arabidopsis thaliana GN=At3g53760 PE=2 SV=2	Back alignment and function desciption

 Score =  977 bits (2526), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/630 (74%), Positives = 534/630 (84%), Gaps = 11/630 (1%)

Query: 11  GYTGDLIIDEREHQNSAATPLSGDAPISEECSFKLAPDISFIEPSERDLLEKIITLGFYY 70
           G+TGDLI+DERE + +     + D+P+S+EC+FKLAPDISFIEPSERDL+E++I LGFYY
Sbjct: 11  GFTGDLIVDEREQRKTLGLAFNSDSPLSDECTFKLAPDISFIEPSERDLIERLIKLGFYY 70

Query: 71  REIDRFASKARNLSWIRSANA-SPLERAAELSK-SKTERPSVYRRAIANGIVEILSVYRS 128
           RE+DRFA K+RNLSWIRS  +  PLERA ELSK S+ ++PSVYRRAIANGI EILSVYRS
Sbjct: 71  RELDRFAKKSRNLSWIRSVTSVHPLERADELSKQSREKKPSVYRRAIANGIGEILSVYRS 130

Query: 129 AVLLIEQKLLSETMPILATVTQGLNKFFVLFPPLYELVLEIERDDIRGGQLLNLLHKRCH 188
           AVL IEQKLL+ET PILATVT+GLNKFFVLFPPLYE++LEIERDDIRGGQLLN+L+KRCH
Sbjct: 131 AVLHIEQKLLAETTPILATVTEGLNKFFVLFPPLYEVILEIERDDIRGGQLLNVLNKRCH 190

Query: 189 CGMPELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIRRQEDRDTEHCSSHSDV 248
           CG+PEL+ C+QRLLW+GHQVMYNQLA+WMVYGILQD HGEFFI+RQ+D D +H SS  +V
Sbjct: 191 CGVPELRTCLQRLLWNGHQVMYNQLAAWMVYGILQDPHGEFFIKRQDDGDLDHRSSQEEV 250

Query: 249 SEKLARLSTDYTSVTDWHLGFHIFLDMLPEYIHMRIAESILFAGKAVRVLRNPSSAFRFQ 308
           SEKLAR S   TS+TDWH GFHI LDMLP+YI MR+ ESILFAGKA+RVLRNPS AF+FQ
Sbjct: 251 SEKLARTSVHETSLTDWHSGFHISLDMLPDYIPMRLGESILFAGKAIRVLRNPSPAFQFQ 310

Query: 309 D----QLITRSSQKIQGVTGRFSIQKEPLLDMKLIGEELLPQSDADKIEAMLQGLKEPSE 364
                Q   R SQ+I+G       + E  LD  L G ELLPQS+ADKIEAML+ LKE SE
Sbjct: 311 KDKSFQQTMRGSQRIRGFMHSDFPETETELDADLTGGELLPQSEADKIEAMLKDLKESSE 370

Query: 365 FHKRSFECAVDSIRAIAASHLWQLVVVRANLNGHLKALKDYFLLEKGDFFQCFLEESRQL 424
           FHKRSFEC VDS+RAIAASHLWQLVVVRA+LNGHLKALKDYFLLEKGDFFQCFLEESRQL
Sbjct: 371 FHKRSFECTVDSVRAIAASHLWQLVVVRADLNGHLKALKDYFLLEKGDFFQCFLEESRQL 430

Query: 425 MRLPPRQSTAEADLMVPFQLAAIKTISEEDKYFSRVSLRMPSFGITVKSPHVDLLKAKAY 484
           MRLPPRQST E+DLMVPFQLAA KTI+EEDKYFSRVSLRMPSFG+TV+S   D++++K  
Sbjct: 431 MRLPPRQSTGESDLMVPFQLAATKTIAEEDKYFSRVSLRMPSFGVTVRSSQADMVRSKVS 490

Query: 485 ADGTSGAALSSGNSDISLDGWDGIALEYSVDWPLQLFFTQEVLSKYCKVFQYLLRLKRTQ 544
             G +        SD S+DGWD IALEYSVDWP+QLFFTQEVLSKY KVFQYL+RLKRTQ
Sbjct: 491 LTGKANLT-----SDTSVDGWDAIALEYSVDWPMQLFFTQEVLSKYLKVFQYLIRLKRTQ 545

Query: 545 MELEKSWASVMHQDHTYFAKHRNDRINYSKSQQRRQTCRPMWRVREHMAFLIRNLQFYIQ 604
           MELEKSWASVMHQDH   A+HR D +N S SQQRRQ  RPMWRVREHMAFLIRNLQFYIQ
Sbjct: 546 MELEKSWASVMHQDHIESAQHRKDGLNGSTSQQRRQGIRPMWRVREHMAFLIRNLQFYIQ 605

Query: 605 VDVIETQWNILQAHIQESHDFTELVGFHQE 634
           VDVIE+QW +LQ HI +S DFTELVGFHQE
Sbjct: 606 VDVIESQWKVLQTHIHDSQDFTELVGFHQE 635

Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9SC88\|GCP4_MEDTR Gamma-tubulin complex component 4 homolog OS=Medicago truncatula GN=85P PE=2 SV=1	Back alignment and function description

>sp\|Q9UGJ1\|GCP4_HUMAN Gamma-tubulin complex component 4 OS=Homo sapiens GN=TUBGCP4 PE=1 SV=1	Back alignment and function description

>sp\|Q9D4F8\|GCP4_MOUSE Gamma-tubulin complex component 4 OS=Mus musculus GN=Tubgcp4 PE=2 SV=2	Back alignment and function description

>sp\|Q9VKU7\|GCP4_DROME Gamma-tubulin complex component 4 homolog OS=Drosophila melanogaster GN=Grip75 PE=1 SV=2	Back alignment and function description

>sp\|Q5R5J6\|GCP2_PONAB Gamma-tubulin complex component 2 OS=Pongo abelii GN=TUBGCP2 PE=2 SV=1	Back alignment and function description

>sp\|Q9BSJ2\|GCP2_HUMAN Gamma-tubulin complex component 2 OS=Homo sapiens GN=TUBGCP2 PE=1 SV=2	Back alignment and function description

>sp\|Q921G8\|GCP2_MOUSE Gamma-tubulin complex component 2 OS=Mus musculus GN=Tubgcp2 PE=2 SV=2	Back alignment and function description

>sp\|Q96CW5\|GCP3_HUMAN Gamma-tubulin complex component 3 OS=Homo sapiens GN=TUBGCP3 PE=1 SV=2	Back alignment and function description

>sp\|P58854\|GCP3_MOUSE Gamma-tubulin complex component 3 OS=Mus musculus GN=Tubgcp3 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		634
225437400		743	PREDICTED: gamma-tubulin complex compone	0.974	0.831	0.821	0.0
255564194		756	gamma-tubulin complex component, putativ	0.982	0.824	0.826	0.0
224128466		728	tubulin gamma complex-associated protein	0.951	0.828	0.804	0.0
356535143		732	PREDICTED: gamma-tubulin complex compone	0.958	0.830	0.773	0.0
356500339		733	PREDICTED: gamma-tubulin complex compone	0.958	0.829	0.770	0.0
297820114		745	tubulin family protein [Arabidopsis lyra	0.976	0.830	0.753	0.0
42565903		745	gamma-tubulin complex component 4-like p	0.976	0.830	0.749	0.0
22095729		739	RecName: Full=Gamma-tubulin complex comp	0.962	0.825	0.739	0.0
449442557		754	PREDICTED: gamma-tubulin complex compone	0.981	0.824	0.765	0.0
7629996		738	putative protein [Arabidopsis thaliana]	0.965	0.829	0.739	0.0

>gi\|225437400\|ref\|XP_002270318.1\| PREDICTED: gamma-tubulin complex component 4 homolog [Vitis vinifera] gi\|297743902\|emb\|CBI36872.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1071 bits (2769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/628 (82%), Positives = 560/628 (89%), Gaps = 10/628 (1%)

Query: 11  GYTGDLIIDEREHQNSAATPLSGDAPISEECSFKLAPDISFIEPSERDLLEKIITLGFYY 70
           GYTGDLIIDERE   S    LS DAP+SE+ +FKLAPD+SFI PSERDL+EK+ITLGFYY
Sbjct: 11  GYTGDLIIDEREQHKSLGINLSPDAPVSEDRTFKLAPDLSFIHPSERDLIEKVITLGFYY 70

Query: 71  REIDRFASKARNLSWIRSANASPLERAAELSKSKTERPSVYRRAIANGIVEILSVYRSAV 130
           RE+DRFA+K+R+LSWIRS N SPL R +EL K K ++ S Y RAIANGIVEILSVYRSAV
Sbjct: 71  RELDRFATKSRDLSWIRSTNVSPLSRTSELLKGKPQKSSAYGRAIANGIVEILSVYRSAV 130

Query: 131 LLIEQKLLSETMPILATVTQGLNKFFVLFPPLYELVLEIERDDIRGGQLLNLLHKRCHCG 190
           L IEQ LLS+  PILATV QGLNKFFVL PPLYEL+LEIERDDI GGQLLNLLHKRCHCG
Sbjct: 131 LHIEQILLSDPTPILATVIQGLNKFFVLLPPLYELILEIERDDICGGQLLNLLHKRCHCG 190

Query: 191 MPELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIRRQEDRDTEHCSSHSDVSE 250
           +PELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIRRQEDRD EH +S SD+ E
Sbjct: 191 VPELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIRRQEDRDVEHEASPSDMVE 250

Query: 251 KLARLSTDYTSVTDWHLGFHIFLDMLPEYIHMRIAESILFAGKAVRVLRNPSSAFRFQDQ 310
           KLAR+STD  S+TDWHLGFHIFLDMLP+YIHMR+AESILFAGKA+RVLRNPSSAFRFQD 
Sbjct: 251 KLARMSTDDASLTDWHLGFHIFLDMLPDYIHMRVAESILFAGKAIRVLRNPSSAFRFQDT 310

Query: 311 L----ITRSSQKIQGVTGRFSIQKEPLLDMKLIGEELLPQSDADKIEAMLQGLKEPSEFH 366
           L    I + S ++QG+TGRFS QKEP +DM+LIGEELLPQS+ADKIEAMLQ LKE SEFH
Sbjct: 311 LNHQQIPKGSHRVQGLTGRFSFQKEPFMDMQLIGEELLPQSEADKIEAMLQELKESSEFH 370

Query: 367 KRSFECAVDSIRAIAASHLWQLVVVRANLNGHLKALKDYFLLEKGDFFQCFLEESRQLMR 426
           KRSFECAVDSIRAIAASHLWQLVVVRA+LNGHLKALKDYFLL KGDFFQCFLEESRQ+MR
Sbjct: 371 KRSFECAVDSIRAIAASHLWQLVVVRADLNGHLKALKDYFLLAKGDFFQCFLEESRQMMR 430

Query: 427 LPPRQSTAEADLMVPFQLAAIKTISEEDKYFSRVSLRMPSFGITVKSPHVDLLKAKAYAD 486
           LPPRQSTAEADLMVPFQLAAIKTI +EDKY+SRVSLRMPSFGITVKS   DL K K YAD
Sbjct: 431 LPPRQSTAEADLMVPFQLAAIKTIGDEDKYYSRVSLRMPSFGITVKSSQADLPKEKTYAD 490

Query: 487 GTSGAALSSGNSDISLDGWDGIALEYSVDWPLQLFFTQEVLSKYCKVFQYLLRLKRTQME 546
           G  G+      S++SL+GWDGIALEYSVDWPLQLFFTQEVLSKY +VFQYLLRLKRTQME
Sbjct: 491 GILGS------SEMSLEGWDGIALEYSVDWPLQLFFTQEVLSKYRRVFQYLLRLKRTQME 544

Query: 547 LEKSWASVMHQDHTYFAKHRNDRINYSKSQQRRQTCRPMWRVREHMAFLIRNLQFYIQVD 606
           LEKSWASVMHQDHT FA+HRND IN + SQQRRQ  RPMWR+REHMAFLIRNLQFYIQVD
Sbjct: 545 LEKSWASVMHQDHTDFAQHRNDHINCTVSQQRRQRSRPMWRIREHMAFLIRNLQFYIQVD 604

Query: 607 VIETQWNILQAHIQESHDFTELVGFHQE 634
           VIE+QWN+LQAHIQESHDFTELVGFHQE
Sbjct: 605 VIESQWNVLQAHIQESHDFTELVGFHQE 632

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255564194\|ref\|XP_002523094.1\| gamma-tubulin complex component, putative [Ricinus communis] gi\|223537656\|gb\|EEF39279.1\| gamma-tubulin complex component, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224128466\|ref\|XP_002320339.1\| tubulin gamma complex-associated protein [Populus trichocarpa] gi\|222861112\|gb\|EEE98654.1\| tubulin gamma complex-associated protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356535143\|ref\|XP_003536108.1\| PREDICTED: gamma-tubulin complex component 4 homolog [Glycine max]	Back alignment and taxonomy information

>gi\|356500339\|ref\|XP_003518990.1\| PREDICTED: gamma-tubulin complex component 4 homolog [Glycine max]	Back alignment and taxonomy information

>gi\|297820114\|ref\|XP_002877940.1\| tubulin family protein [Arabidopsis lyrata subsp. lyrata] gi\|297323778\|gb\|EFH54199.1\| tubulin family protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi|42565903|ref|NP_190944.2| gamma-tubulin complex component 4-like protein [Arabidopsis thaliana] gi|83302875|sp|Q9M350.2|GCP4_ARATH RecName: Full=Gamma-tubulin complex component 4 homolog gi|45773820|gb|AAS76714.1| At3g53760 [Arabidopsis thaliana] gi|46402452|gb|AAS92328.1| At3g53760 [Arabidopsis thaliana] gi|332645618|gb|AEE79139.1| gamma-tubulin complex component 4-like protein [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|22095729\|sp\|Q9SC88.1\|GCP4_MEDTR RecName: Full=Gamma-tubulin complex component 4 homolog gi\|6562700\|emb\|CAB62542.1\| 85p protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449442557\|ref\|XP_004139048.1\| PREDICTED: gamma-tubulin complex component 4 homolog [Cucumis sativus]	Back alignment and taxonomy information

>gi\|7629996\|emb\|CAB88338.1\| putative protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		634
TAIR\|locus:2084430		745	GCP4 "GAMMA-TUBULIN COMPLEX PR	0.976	0.830	0.749	6.9e-253
UNIPROTKB\|E1BQM2		665	TUBGCP4 "Uncharacterized prote	0.384	0.366	0.339	2.1e-55
UNIPROTKB\|A0JNH5		666	TUBGCP4 "Uncharacterized prote	0.384	0.366	0.320	2.4e-54
UNIPROTKB\|E2RSA5		668	TUBGCP4 "Uncharacterized prote	0.369	0.350	0.341	3.6e-54
UNIPROTKB\|F1SI61		635	TUBGCP4 "Uncharacterized prote	0.369	0.368	0.333	1e-53
UNIPROTKB\|Q9UGJ1		667	TUBGCP4 "Gamma-tubulin complex	0.386	0.367	0.324	1e-53
RGD\|1306924		619	Tubgcp4 "tubulin, gamma comple	0.362	0.371	0.333	1e-52
MGI\|MGI:1196293		667	Tubgcp4 "tubulin, gamma comple	0.369	0.350	0.341	3.5e-52
FB\|FBgn0026431		650	Grip75 "Grip75" [Drosophila me	0.367	0.358	0.269	5.1e-29
UNIPROTKB\|Q9BVR6		342	TUBGCP4 "TUBGCP4 protein" [Hom	0.321	0.596	0.314	8e-22

TAIR\|locus:2084430 GCP4 "GAMMA-TUBULIN COMPLEX PROTEIN 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2435 (862.2 bits), Expect = 6.9e-253, P = 6.9e-253
 Identities = 472/630 (74%), Positives = 534/630 (84%)

Query:    11 GYTGDLIIDEREHQNSAATPLSGDAPISEECSFKLAPDISFIEPSERDLLEKIITLGFYY 70
             G+TGDLI+DERE + +     + D+P+S+EC+FKLAPDISFIEPSERDL+E++I LGFYY
Sbjct:    11 GFTGDLIVDEREQRKTLGLAFNSDSPLSDECTFKLAPDISFIEPSERDLIERLIKLGFYY 70

Query:    71 REIDRFASKARNLSWIRSANA-SPLERAAELSK-SKTERPSVYRRAIANGIVEILSVYRS 128
             RE+DRFA K+RNLSWIRS  +  PLERA ELSK S+ ++PSVYRRAIANGI EILSVYRS
Sbjct:    71 RELDRFAKKSRNLSWIRSVTSVHPLERADELSKQSREKKPSVYRRAIANGIGEILSVYRS 130

Query:   129 AVLLIEQKLLSETMPILATVTQGLNKFFVLFPPLYELVLEIERDDIRGGQLLNLLHKRCH 188
             AVL IEQKLL+ET PILATVT+GLNKFFVLFPPLYE++LEIERDDIRGGQLLN+L+KRCH
Sbjct:   131 AVLHIEQKLLAETTPILATVTEGLNKFFVLFPPLYEVILEIERDDIRGGQLLNVLNKRCH 190

Query:   189 CGMPELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIRRQEDRDTEHCSSHSDV 248
             CG+PEL+ C+QRLLW+GHQVMYNQLA+WMVYGILQD HGEFFI+RQ+D D +H SS  +V
Sbjct:   191 CGVPELRTCLQRLLWNGHQVMYNQLAAWMVYGILQDPHGEFFIKRQDDGDLDHRSSQEEV 250

Query:   249 SEKLARLSTDYTSVTDWHLGFHIFLDMLPEYIHMRIAESILFAGKAVRVLRNPSSAFRFQ 308
             SEKLAR S   TS+TDWH GFHI LDMLP+YI MR+ ESILFAGKA+RVLRNPS AF+FQ
Sbjct:   251 SEKLARTSVHETSLTDWHSGFHISLDMLPDYIPMRLGESILFAGKAIRVLRNPSPAFQFQ 310

Query:   309 D----QLITRSSQKIQGVTGRFSIQKEPLLDMKLIGEELLPQSDADKIEAMLQGLKEPSE 364
                  Q   R SQ+I+G       + E  LD  L G ELLPQS+ADKIEAML+ LKE SE
Sbjct:   311 KDKSFQQTMRGSQRIRGFMHSDFPETETELDADLTGGELLPQSEADKIEAMLKDLKESSE 370

Query:   365 FHKRSFECAVDSIRAIAASHLWQLVVVRANLNGHLKALKDYFLLEKGDFFQCFLEESRQL 424
             FHKRSFEC VDS+RAIAASHLWQLVVVRA+LNGHLKALKDYFLLEKGDFFQCFLEESRQL
Sbjct:   371 FHKRSFECTVDSVRAIAASHLWQLVVVRADLNGHLKALKDYFLLEKGDFFQCFLEESRQL 430

Query:   425 MRLPPRQSTAEADLMVPFQLAAIKTISEEDKYFSRVSLRMPSFGITVKSPHVDLLKAKAY 484
             MRLPPRQST E+DLMVPFQLAA KTI+EEDKYFSRVSLRMPSFG+TV+S   D++++K  
Sbjct:   431 MRLPPRQSTGESDLMVPFQLAATKTIAEEDKYFSRVSLRMPSFGVTVRSSQADMVRSKVS 490

Query:   485 ADGTSGAALSSGNSDISLDGWDGIALEYSVDWPLQLFFTQEVLSKYCKVFQYLLRLKRTQ 544
               G +        SD S+DGWD IALEYSVDWP+QLFFTQEVLSKY KVFQYL+RLKRTQ
Sbjct:   491 LTGKANLT-----SDTSVDGWDAIALEYSVDWPMQLFFTQEVLSKYLKVFQYLIRLKRTQ 545

Query:   545 MELEKSWASVMHQDHTYFAKHRNDRINYSKSQQRRQTCRPMWRVREHMAFLIRNLQFYIQ 604
             MELEKSWASVMHQDH   A+HR D +N S SQQRRQ  RPMWRVREHMAFLIRNLQFYIQ
Sbjct:   546 MELEKSWASVMHQDHIESAQHRKDGLNGSTSQQRRQGIRPMWRVREHMAFLIRNLQFYIQ 605

Query:   605 VDVIETQWNILQAHIQESHDFTELVGFHQE 634
             VDVIE+QW +LQ HI +S DFTELVGFHQE
Sbjct:   606 VDVIESQWKVLQTHIHDSQDFTELVGFHQE 635

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005815 "microtubule organizing center" evidence=IEA

GO:0015631 "tubulin binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0007020 "microtubule nucleation" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0043622 "cortical microtubule organization" evidence=IMP

GO:0045298 "tubulin complex" evidence=IPI

GO:0009506 "plasmodesma" evidence=IDA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

UNIPROTKB\|E1BQM2 TUBGCP4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|A0JNH5 TUBGCP4 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RSA5 TUBGCP4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SI61 TUBGCP4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9UGJ1 TUBGCP4 "Gamma-tubulin complex component 4" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|1306924 Tubgcp4 "tubulin, gamma complex associated protein 4" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:1196293 Tubgcp4 "tubulin, gamma complex associated protein 4" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

FB\|FBgn0026431 Grip75 "Grip75" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9BVR6 TUBGCP4 "TUBGCP4 protein" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SC88	GCP4_MEDTR	No assigned EC number	0.7392	0.9621	0.8254	N/A	no
Q9M350	GCP4_ARATH	No assigned EC number	0.7492	0.9763	0.8308	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		634
pfam04130		528	pfam04130, Spc97_Spc98, Spc97 / Spc98 family	1e-110

>gnl\|CDD\|217915 pfam04130, Spc97_Spc98, Spc97 / Spc98 family	Back alignment and domain information

 Score =  341 bits (875), Expect = e-110
 Identities = 166/633 (26%), Positives = 248/633 (39%), Gaps = 119/633 (18%)

Query: 4   ELLLALLGYTGDLIIDEREHQNSAATPLSGDAPISEECSFKLAPDIS-FIEPSERDLLEK 62
           +LL ALLG        +                     SFK+AP+IS  + PS R LL +
Sbjct: 1   DLLFALLGLESLYFRYD-----------------KSSESFKIAPNISGLLSPSLRSLLNR 43

Query: 63  IITLGFYYREIDRFASKARNLSWIRSANASPLERAAELSKSKTERPSVYRRAIANGIVEI 122
           I+ LG  YR +  F                      E   S +       +A+A  + EI
Sbjct: 44  ILELGTLYRRLREFI---------------------ESISSSSSLYGPVLQALAAALREI 82

Query: 123 LSVYRSAVLLIEQKLLSETMPILATVTQGLNKFFVLFPPLYELVLEIERDDIRGGQLLNL 182
           L+ Y   V  +E +LLS     L  +   L    +L   L E+V EI    ++GGQLL+ 
Sbjct: 83  LNEYLQLVAQLESELLSNGTLTLLQLLAELQPAILLLRLLAEIVEEILSKSLKGGQLLSS 142

Query: 183 LHKRC--HCGMPELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIRRQEDRDTE 240
           L++R     G P+L+  + RLL    Q     L+ W+++G L D +GEFFI+  E  +  
Sbjct: 143 LYERIASQTGDPDLRELLLRLLNAASQPYLQMLSRWLLHGELDDPYGEFFIKENESEEVL 202

Query: 241 HCSSHSDVSEKLARLSTDYTSVTDWHLGFHIFLDMLPEYIHMRIAESILFAGKAVRVLRN 300
                               S   W   + +  DMLP ++   +A  IL  GK++  LR 
Sbjct: 203 -----------------SDDSDEYWEERYTLREDMLPSFLPKELARKILEIGKSLNFLRE 245

Query: 301 PSSAFRFQDQLITRSSQKIQGVTGRFSIQKEPLLDMKLIGEELLPQSDADKIEAMLQGLK 360
              +           S                                    EA++  LK
Sbjct: 246 CCKSHPLAKDQSLALSL----------------------------------REALVSLLK 271

Query: 361 EPSEFHKRSFECAVDSIRAIAASHLWQLVVVRANLNGHLKALKDYFLLEKGDFFQCFLEE 420
             S     + E  +DS    A+  L  L++   +L GHL+ALKDYFLL +GDF   FLE 
Sbjct: 272 LFSSLDTSALELLIDSAYLEASKSLLDLLLEEYDLLGHLQALKDYFLLGRGDFISSFLES 331

Query: 421 SRQLMRLPPRQSTAEADLMVPFQLAAIKTISEEDKYFSRVSLRMPSFGITVKSPHVDLLK 480
               +  P    +  A   +  +     +  ++        L               L +
Sbjct: 332 LFDELDKPANSLSDHALQSLLQEALRSSSSDDDPASSDLDELE-----TKKSDSSETLNR 386

Query: 481 AKAYADGTSGAALSSGNSDISLDGWDGIALEYSVDWPLQLFFTQEVLSKYCKVFQYLLRL 540
               +   S            L G D + L+Y V WPL L  T E L KY ++F++LLRL
Sbjct: 387 LDVSSLELSS----------GLSGLDALTLDYKVPWPLSLILTPEALKKYQRIFRFLLRL 436

Query: 541 KRTQMELEKSWASVMHQDHTYFAKHRNDRINYSKSQQRRQTCRPMWRVREHMAFLIRNLQ 600
           KR +  L K W  +              R     +++     R +W +R  M   + +LQ
Sbjct: 437 KRAEYLLNKLWKELNK------------RRRLGSTRRNEPLLRKIWLLRFQMLHFVNSLQ 484

Query: 601 FYIQVDVIETQWNILQAHIQESHDFTELVGFHQ 633
           +YIQVDVIE+ W  LQ  +Q++ D  EL+  H+
Sbjct: 485 YYIQVDVIESNWQKLQEQLQKAKDLDELIAAHE 517

The spindle pole body (SPB) functions as the microtubule-organising centre in yeast. Members of this family are spindle pole body (SBP) components such as Spc97 and Spc98 that form a complex with gamma-tubulin. This family of proteins includes the grip motif 1 and grip moti 2. Length = 528

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		634
KOG2065		679	consensus Gamma-tubulin ring complex protein [Cyto	100.0
KOG2001		734	consensus Gamma-tubulin complex, DGRIP84/SPC97 com	100.0
PF04130		542	Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR00	100.0
KOG2000		879	consensus Gamma-tubulin complex, DGRIP91/SPC98 com	100.0
KOG4344		1121	consensus Uncharacterized conserved protein [Funct	99.95
PF14609		653	GCP5-Mod21: gamma-Tubulin ring complex non-core su	81.46

>KOG2065 consensus Gamma-tubulin ring complex protein [Cytoskeleton]	Back alignment and domain information

Probab=100.00  E-value=5.1e-83  Score=630.37  Aligned_cols=568  Identities=39%  Similarity=0.635  Sum_probs=464.4

Q ss_pred             ChHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCCCCCceeeCCCCC-CCChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006711            1 MLHELLLALLGYTGDLIIDEREHQNSAATPLSGDAPISEECSFKLAPDIS-FIEPSERDLLEKIITLGFYYREIDRFASK   79 (634)
Q Consensus         1 mv~dlL~aL~G~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~v~~~~~-~l~~s~~~ll~~i~~~g~~~~~l~~fv~~   79 (634)
                      ||||+|+||.|++|+.|.+....   +              +...+.++| +++||||+++++++.+|.+|+.+.+|.+-
T Consensus         1 MiHeLLLAl~g~~g~~~~~~~R~---~--------------GLa~~~d~p~FihPsEr~i~~rliklg~~Y~e~~rFtsw   63 (679)
T KOG2065|consen    1 MIHELLLALRGHNGEQLGIKARF---N--------------GLAETTDIPQFIHPSEREIFMRLIKLGKVYQEVERFTSW   63 (679)
T ss_pred             CHHHHHHHHhCCChhheeehhhc---c--------------ccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999997621   1              223345555 89999999999999999999999999855


Q ss_pred             hhccccccccCCCchhhHhhhhc-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHhHhhhhhh
Q 006711           80 ARNLSWIRSANASPLERAAELSK-SKTERPSVYRRAIANGIVEILSVYRSAVLLIEQKLLSETMPILATVTQGLNKFFVL  158 (634)
Q Consensus        80 ~~~~~~i~s~~~~~~~~~~~~~~-~~~~~~g~~~~A~~~~l~~~L~~y~~~l~~lE~~~~~~~~~sL~~l~~~l~~~~~~  158 (634)
                      +      ++.-.+|+.+++++++ .....+|.|.+|||.||.+.|++|+..|..||+.++.++.++|+++...|..++..
T Consensus        64 I------rsvTsH~~~r~~~~s~q~~~~lhg~Ylra~a~Gi~~~L~~Yr~ail~lEq~~Lg~~~~sls~V~~~L~~ff~L  137 (679)
T KOG2065|consen   64 I------RSVTSHSSGRKSDTSGQLPDSLHGYYLRALAKGIEMALEEYRAAILRLEQYCLGNERNSLSYVYNALYAFFPL  137 (679)
T ss_pred             H------HHhccCcccccccccccCCCccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhh
Confidence            3      3332345444444332 33456899999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhcCCCccchHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcceecCCCCcceEEeecCCC
Q 006711          159 FPPLYELVLEIERDDIRGGQLLNLLHKRCHCGMPELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIRRQEDRD  238 (634)
Q Consensus       159 l~~L~~iv~~i~~~~~~g~~LL~~L~~~~~~g~~~~~~~l~~Ll~~~~~p~~~~l~~Wl~~G~L~Dp~~EFFI~~~~~~~  238 (634)
                      ++.++++|.+|...+++||+||+.||++ +||.|+++..+.++++.|..++++++..||.+|.|.||++||||+......
T Consensus       138 fp~~~~vi~eI~~~~irGcqlL~~l~k~-HCg~p~ir~~l~~~l~~~h~vmy~qLaaWml~Gvl~D~H~EFFIK~q~~~~  216 (679)
T KOG2065|consen  138 FPFMRNVITEIHVLNIRGCQLLHNLHKQ-HCGHPDIRLELAIKLKPVHNVMYSQLAAWMLFGVLDDVHSEFFIKFQPTDA  216 (679)
T ss_pred             hHHHHHHHHHHHhcccchhHHHHHHHHh-ccCCCcHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccchheEEeccCCCC
Confidence            9999999999988899999999999998 799999999999999999999999999999999999999999999988887


Q ss_pred             cccCCCcccchHHhh--hhcc-CCCCccccccceeeecCCCCcccChHHHHHHHhhhhHHHHhhCCCccc--h-hhhhhh
Q 006711          239 TEHCSSHSDVSEKLA--RLST-DYTSVTDWHLGFHIFLDMLPEYIHMRIAESILFAGKAVRVLRNPSSAF--R-FQDQLI  312 (634)
Q Consensus       239 ~~~~~~~~~~~~~l~--~~~~-~~~~~~~W~~~f~l~~~~lP~fl~~~~a~~Il~~GK~l~~L~~~~~~~--~-~~~~~~  312 (634)
                      .+..|..++..++|.  ++.. .........-.|..+....|.|.+-..+.+.|++|+...+.+.....-  . ..++.+
T Consensus       217 ~d~ss~~ee~~e~L~vhsLTgi~l~~l~D~rl~~E~nm~a~~~~~sl~~~s~~l~v~~~~s~~~~~R~~~~i~F~~~~~~  296 (679)
T KOG2065|consen  217 VDGSSFSEEATESLLVHSLTGIALKNLEDYRLQYEVNMSALPGFFSLVLASKVLFVGQTVSVFKMGRNVKVINFKTDPLA  296 (679)
T ss_pred             CCcccCchhhhhhhhhcccchhhhhchhhhhHHHHHhhhccccceeeeccccceeeccchHHHhhccceeeeeccCCchh
Confidence            777777777666653  1110 001111123356666677888887788899999999888877532110  0 001111


Q ss_pred             hhcccccccccccccccccchhhhhhhcccCCCcccHHHHHHHHhcccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 006711          313 TRSSQKIQGVTGRFSIQKEPLLDMKLIGEELLPQSDADKIEAMLQGLKEPSEFHKRSFECAVDSIRAIAASHLWQLVVVR  392 (634)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~l~~~I~~~~~~~s~~l~~~l~~~  392 (634)
                                      .+|..++.++.+.++++ ..+++++.++.+|++.+.|+...|+..|+.++..++.+||++++++
T Consensus       297 ----------------~~e~eld~dlt~G~ll~-~~Ed~f~aml~dLk~~~~f~~~~fE~vVd~ir~~va~hLw~l~V~e  359 (679)
T KOG2065|consen  297 ----------------AKEAELDSDLTYGQLLS-GREDEFFAMLVDLKNEDTFNVFRFEKVVDDIRNYVAAHLWELAVNE  359 (679)
T ss_pred             ----------------hHHhhccccchhhhhcC-CChHHHHHHHHhhhcCCceeeeeHHHHHHHHHHHHHHHHHHHHHhH
Confidence                            11222334444556888 4459999999999999999999999999999999999999999999


Q ss_pred             hcHHHHHHHhhhhhcccCCchHHHHHHHHHHhhcCCCCCCcchhccchHHHHHHhhhcccccccCCceeEEecCCCcccC
Q 006711          393 ANLNGHLKALKDYFLLEKGDFFQCFLEESRQLMRLPPRQSTAEADLMVPFQLAAIKTISEEDKYFSRVSLRMPSFGITVK  472 (634)
Q Consensus       393 ~~L~~~L~~l~~~fLl~~Gdf~~~f~~~~~~~l~~~~~~~~~~~~l~~~l~~a~~~s~~~~d~~~~~l~~~~~~~~~~~~  472 (634)
                      .+|.+||++||+|||||+|||++.|++.+...|+.|++..+ +++++..|+.|...+..++|++++++++.+...+-++.
T Consensus       360 ~DL~gqlk~iKDffLLgrGeffq~F~~~~~~~m~tpp~~~t-E~dv~v~FqlaAtkt~~~dDkyl~~~sL~~~~~grs~~  438 (679)
T KOG2065|consen  360 VDLEGQLKLIKDFFLLGRGEFFQEFCSQMVGTMETPPEERT-EKDVTVSFQLAATKTGITDDKYLDKFSLICQRSGRSEP  438 (679)
T ss_pred             HhHHhHHHHHHHHHHhcccHHHHHHHHHHHHHhhCCchhhc-ccccchhhhhhhhhccccccccccceEEEecccCCCCc
Confidence            99999999999999999999999999999999999999888 89999999999999999999999999999987652221


Q ss_pred             CCccchhhhhcccCCCCCCccCCCCCCCCccccceeeeeeecCCccccccCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 006711          473 SPHVDLLKAKAYADGTSGAALSSGNSDISLDGWDGIALEYSVDWPLQLFFTQEVLSKYCKVFQYLLRLKRTQMELEKSWA  552 (634)
Q Consensus       473 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~l~L~y~v~wPL~lilt~~~~~~Y~~IFr~Ll~lk~~~~~L~~~w~  552 (634)
                         .|..+.   .+   |-+  ......+..|||++.|.|+|+|||+++|||.++++||.||+||+++||+++.|+++|.
T Consensus       439 ---aD~~~~---~t---Gka--~ltsdtsvdGWdAl~L~Y~v~WPl~llFtp~~~e~yn~VF~yLl~irr~Q~Elq~~WA  507 (679)
T KOG2065|consen  439 ---ADTSDF---NT---GKA--FLTSDTSVDGWDALSLKYEVEWPLNLLFTPTTIERYNNVFRYLLIIRRYQYELQRVWA  507 (679)
T ss_pred             ---cchhhh---cc---Ccc--cccCCCCccchhhhceeeEeccchheeechhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               111111   11   211  2223567899999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhchhhhcccccccccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCHHHHHhhh
Q 006711          553 SVMHQDHTYFAKHRNDRINYSKSQQRRQTCRPMWRVREHMAFLIRNLQFYIQVDVIETQWNILQAHIQESHDFTELVGFH  632 (634)
Q Consensus       553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~m~~fv~~L~~Y~~~~VIe~~~~~l~~~l~~a~~ldei~~~H  632 (634)
                      .+|.+++..-     .++..+      +.++  |.+|+.|.+|+++||+|+++||||++|..++..++...||++|..+|
T Consensus       508 ~qm~r~h~~s-----~q~~d~------~~I~--WRlRnhmaFl~~NlQyYiQVDVlESQf~~L~~~I~s~~DFe~i~~aH  574 (679)
T KOG2065|consen  508 KQMWRAHSAS-----DQPPDN------KIIT--WRLRNHMAFLLNNLQYYIQVDVLESQFGILMNVIKSRSDFEVIQRAH  574 (679)
T ss_pred             HHHHHHHhhc-----cCCCCC------ccch--HHHHHHHHHHHhhhheeeeehhHHHHHHHHHHHhcchhhHHHHHHHH
Confidence            9998876511     110000      1222  99999999999999999999999999999999999999999999999


Q ss_pred             cC
Q 006711          633 QE  634 (634)
Q Consensus       633 ~~  634 (634)
                      ++
T Consensus       575 ~~  576 (679)
T KOG2065|consen  575 TV  576 (679)
T ss_pred             HH
Confidence            74

>KOG2001 consensus Gamma-tubulin complex, DGRIP84/SPC97 component [Cytoskeleton]	Back alignment and domain information

>PF04130 Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR007259 Members of this family are spindle pole body (SBP) components such as Spc97, Spc98 and gamma-tubulin	Back alignment and domain information

>KOG2000 consensus Gamma-tubulin complex, DGRIP91/SPC98 component [Cytoskeleton]	Back alignment and domain information

>KOG4344 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF14609 GCP5-Mod21: gamma-Tubulin ring complex non-core subunit mod21	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		634
3rip_A		677	Crystal Structure Of Human Gamma-Tubulin Complex Pr		2e-69

>pdb|3RIP|A Chain A, Crystal Structure Of Human Gamma-Tubulin Complex Protein 4 (Gcp4) Length = 677

Back alignment and structure

Iteration: 1

Score = 259 bits (663), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 180/602 (29%), Positives = 295/602 (49%), Gaps = 82/602 (13%) Query: 38 SEECSFKLAPDISFIEPSERDLLEKIITLGFYYREIDRFASKARNLSWIRSANASPLERA 97 ++ +++ D F+ PSE +L ++ LG Y F + ++ + P ++ Sbjct: 20 NKRSGLQVSQDFPFLHPSETSVLNRLCRLGTDYIRFTEFIEQYTG--HVQQQDHHPSQQG 77 Query: 98 AELSKSKTERPSVYRRAIANGIVEILSVYRSAVLLIEQKLLSETMPILATVTQGLNKFFV 157 + +Y RA G+ +L YR A+L +EQ+ L + ++ V L++F + Sbjct: 78 ------QGGLHGIYLRAFCTGLDSVLQPYRQALLDLEQEFLGDPHLSISHVNYFLDQFQL 131 Query: 158 LFPPLYELVLEIERDDIRGGQLLNLLHKRCHCGMPELQACIQRLLWHGHQVMYNQLASWM 217 LFP + +V +I+ I G Q+L ++K G+P +++ ++++L H VMY QL++WM Sbjct: 132 LFPSVMVVVEQIKSQKIHGCQILETVYKHSCGGLPPVRSALEKILAVCHGVMYKQLSAWM 191 Query: 218 VYGILQDQHGEFFIRR---------QEDRDTEHCSSHSDVSEKL-----ARLSTDYTSVT 263 ++G+L DQH EFFI++ Q + D E ++L RL + + Sbjct: 192 LHGLLLDQHEEFFIKQGPSSGNVSAQPEEDEEDLGIGGLTGKQLRELQDLRLIEEENMLA 251 Query: 264 DWHLGFHIFLDMLPEYIHMRIAESILFAGKAVRVLRNPSSAFRFQDQLITRSSQKIQGVT 323 F + +++LP YI +R+AE ILF G++V++ N Q+ +TR Sbjct: 252 PSLKQFSLRVEILPSYIPVRVAEKILFVGESVQMFEN-------QNVNLTRKG------- 297 Query: 324 GRFSIQKEPLLDMKLIGEELLPQSDADKIEAMLQGLKEPSEFHKRSFECAVDSIRAIAAS 383 SI K + D A L LK+ F FE VD IR+ A Sbjct: 298 ---SILK----------------NQEDTFAAELHRLKQQPLFSLVDFEQVVDRIRSTVAE 338 Query: 384 HLWQLVVVRANLNGHLKALKDYFLLEKGDFFQCFLEESRQLMRLPPRQSTAEADLMVPFQ 443 HLW+L+V ++L G LK +KD++LL +G+ FQ F++ ++ +++ PP T E D+ V FQ Sbjct: 339 HLWKLMVEESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPPTAVT-EHDVNVAFQ 397 Query: 444 LAAIKTISEEDKYFSRVSLRMPSFGITVKSPHVDLLKAKAYADGTSGAALSSGNSDISLD 503 +A K + ++D + L + G H D +A+ G + + + Sbjct: 398 QSAHKVLLDDDNLLPLLHLTIEYHG----KEHKDATQAR------EGPSRETSPREAPAS 447 Query: 504 GWDGIALEYSVDWPLQLFFTQEVLSKYCKVFQYLLRLKRTQMELEKSWASVMHQDHTYFA 563 GW + L Y V WPL + FT VL KY VF+YLL ++R Q EL+ WA M + H Sbjct: 448 GWAALGLSYKVQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRKHL--- 504 Query: 564 KHRNDRINYSKSQQRRQTCRPMWRVREHMAFLIRNLQFYIQVDVIETQWNILQAHIQESH 623 + QT WR+R HMAFL+ NLQ+Y+QVDV+E+Q++ L I + Sbjct: 505 -------------KSNQTDAIKWRLRNHMAFLVDNLQYYLQVDVLESQFSQLLHQINSTR 551 Query: 624 DF 625 DF Sbjct: 552 DF 553

PyMOL of 3rip

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		634
3rip_A		677	Gamma-tubulin complex component 4; helix bundles,	4e-93
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens} Length = 677	Back alignment and structure

 Score =  300 bits (769), Expect = 4e-93
 Identities = 181/648 (27%), Positives = 297/648 (45%), Gaps = 100/648 (15%)

Query: 1   MLHELLLALLGYTGDLIIDEREHQNSAATPLSGDAPISEECSFKLAPDISFIEPSERDLL 60
           M+HELLLAL GY G +                     ++    +++ D  F+ PSE  +L
Sbjct: 1   MIHELLLALSGYPGSIF------------------TWNKRSGLQVSQDFPFLHPSETSVL 42

Query: 61  EKIITLGFYYREIDRFASKARNLSWIRSANASPLERAAELSKSKTERPSVYRRAIANGIV 120
            ++  LG  Y     F  +       +  + S         + +     +Y RA   G+ 
Sbjct: 43  NRLCRLGTDYIRFTEFIEQYTGHVQQQDHHPS--------QQGQGGLHGIYLRAFCTGLD 94

Query: 121 EILSVYRSAVLLIEQKLLSETMPILATVTQGLNKFFVLFPPLYELVLEIERDDIRGGQLL 180
            +L  YR A+L +EQ+ L +    ++ V   L++F +LFP +  +V +I+   I G Q+L
Sbjct: 95  SVLQPYRQALLDLEQEFLGDPHLSISHVNYFLDQFQLLFPSVMVVVEQIKSQKIHGCQIL 154

Query: 181 NLLHKRCHCGMPELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIRRQEDRDTE 240
             ++K    G+P +++ ++++L   H VMY QL++WM++G+L DQH EFFI++       
Sbjct: 155 ETVYKHSCGGLPPVRSALEKILAVCHGVMYKQLSAWMLHGLLLDQHEEFFIKQGPSSGNV 214

Query: 241 HCSSHSDVSEKL--------------ARLSTDYTSVTDWHLGFHIFLDMLPEYIHMRIAE 286
                 D  +                 RL  +   +      F + +++LP YI +R+AE
Sbjct: 215 SAQPEEDEEDLGIGGLTGKQLRELQDLRLIEEENMLAPSLKQFSLRVEILPSYIPVRVAE 274

Query: 287 SILFAGKAVRVLRNPSSAFRFQDQLITRSSQKIQGVTGRFSIQKEPLLDMKLIGEELLPQ 346
            ILF G++V++  N +                                 + L  +  + +
Sbjct: 275 KILFVGESVQMFENQN---------------------------------VNLTRKGSILK 301

Query: 347 SDADKIEAMLQGLKEPSEFHKRSFECAVDSIRAIAASHLWQLVVVRANLNGHLKALKDYF 406
           +  D   A L  LK+   F    FE  VD IR+  A HLW+L+V  ++L G LK +KD++
Sbjct: 302 NQEDTFAAELHRLKQQPLFSLVDFEQVVDRIRSTVAEHLWKLMVEESDLLGQLKIIKDFY 361

Query: 407 LLEKGDFFQCFLEESRQLMRLPPRQSTAEADLMVPFQLAAIKTISEEDKYFSRVSLRMPS 466
           LL +G+ FQ F++ ++ +++ PP  +  E D+ V FQ +A K + ++D     + L +  
Sbjct: 362 LLGRGELFQAFIDTAQHMLKTPPT-AVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTIEY 420

Query: 467 FGITVKSPHVDLLKAKAYADGTSGAALSSGNSDISLDGWDGIALEYSVDWPLQLFFTQEV 526
            G   K                 G +  +   +    GW  + L Y V WPL + FT  V
Sbjct: 421 HGKEHKDA----------TQAREGPSRETSPREAPASGWAALGLSYKVQWPLHILFTPAV 470

Query: 527 LSKYCKVFQYLLRLKRTQMELEKSWASVMHQDHTYFAKHRNDRINYSKSQQRRQTCRPMW 586
           L KY  VF+YLL ++R Q EL+  WA  M + H                 +  QT    W
Sbjct: 471 LEKYNVVFKYLLSVRRVQAELQHCWALQMQRKHL----------------KSNQTDAIKW 514

Query: 587 RVREHMAFLIRNLQFYIQVDVIETQWNILQAHIQESHDFTELVGFHQE 634
           R+R HMAFL+ NLQ+Y+QVDV+E+Q++ L   I  + DF  +   H  
Sbjct: 515 RLRNHMAFLVDNLQYYLQVDVLESQFSQLLHQINSTRDFESIRLAHDH 562

PyMOL of 3rip

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		634
3rip_A		677	Gamma-tubulin complex component 4; helix bundles,	100.0

>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens}	Back alignment and structure

Probab=100.00  E-value=3.3e-83  Score=724.49  Aligned_cols=547  Identities=33%  Similarity=0.632  Sum_probs=430.9

Q ss_pred             ChHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCCCCCceeeCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006711            1 MLHELLLALLGYTGDLIIDEREHQNSAATPLSGDAPISEECSFKLAPDISFIEPSERDLLEKIITLGFYYREIDRFASKA   80 (634)
Q Consensus         1 mv~dlL~aL~G~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~v~~~~~~l~~s~~~ll~~i~~~g~~~~~l~~fv~~~   80 (634)
                      ||||||+||+|++|++|++.+                  .++|+|++++++++|++++++++|+++|++|++|++|++..
T Consensus         1 Ml~dlL~~L~G~~g~~i~~~~------------------~~~f~v~~~~~~l~~s~r~ll~~l~~lg~~y~~l~~fv~~~   62 (677)
T 3rip_A            1 MIHELLLALSGYPGSIFTWNK------------------RSGLQVSQDFPFLHPSETSVLNRLCRLGTDYIRFTEFIEQY   62 (677)
T ss_dssp             CHHHHHHHHTTCCCSSSEEET------------------TTEEECCSCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHcCCCCCceEecC------------------CCceeeCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999964                  45799999998899999999999999999999999999974


Q ss_pred             hccccccccCCCchhhHhhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHhHhhhhhhhh
Q 006711           81 RNLSWIRSANASPLERAAELSKSKTERPSVYRRAIANGIVEILSVYRSAVLLIEQKLLSETMPILATVTQGLNKFFVLFP  160 (634)
Q Consensus        81 ~~~~~i~s~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~l~~~L~~y~~~l~~lE~~~~~~~~~sL~~l~~~l~~~~~~l~  160 (634)
                      ..  ++.+.+.+|.      +.+.....|+|.+|||++|+++|.+|+..|+++|++++.++.+||+.+...++++..+|+
T Consensus        63 ~~--~~~~~~~~~~------~~~~~~~~g~v~~Al~~~i~~~L~~Y~~~i~~lE~~~l~~~~~sL~~l~~~l~~~~~~l~  134 (677)
T 3rip_A           63 TG--HVQQQDHHPS------QQGQGGLHGIYLRAFCTGLDSVLQPYRQALLDLEQEFLGDPHLSISHVNYFLDQFQLLFP  134 (677)
T ss_dssp             SC--C-------------------CCSCSHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTCCHHHHHHHTHHHHHHHH
T ss_pred             cc--cccCcccccc------cccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHH
Confidence            21  1111111110      000122369999999999999999999999999999998888999999999999999999


Q ss_pred             HHHHHHHHHhcCCCccchHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcceecCCCCcceEEeecCCCcc
Q 006711          161 PLYELVLEIERDDIRGGQLLNLLHKRCHCGMPELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIRRQEDRDTE  240 (634)
Q Consensus       161 ~L~~iv~~i~~~~~~g~~LL~~L~~~~~~g~~~~~~~l~~Ll~~~~~p~~~~l~~Wl~~G~L~Dp~~EFFI~~~~~~~~~  240 (634)
                      .|++|+.++.....+||+||+.||+++.+|+|.+++++.+|+.+|++||++||..||.+|+|.|||+||||++++..+..
T Consensus       135 ~L~~l~~~~~~~~~~G~~lL~~L~~~~~~Gd~~~~~~~~~Ll~~~~~~~~~~L~~Wl~~G~L~Dp~~EFFI~~~~~~~~~  214 (677)
T 3rip_A          135 SVMVVVEQIKSQKIHGCQILETVYKHSCGGLPPVRSALEKILAVCHGVMYKQLSAWMLHGLLLDQHEEFFIKQGPSSGNV  214 (677)
T ss_dssp             HHHHHHHHHHHHTCCTHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSCSSEEEC------
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeCCCcchheeEeccccccc
Confidence            99999998876778999999999999999999999999999999999999999999999999999999999998654321


Q ss_pred             cCCCcccchHHhh----------hh-----ccCCCCccccccceeeecCCCCcccChHHHHHHHhhhhHHHHhhCCCccc
Q 006711          241 HCSSHSDVSEKLA----------RL-----STDYTSVTDWHLGFHIFLDMLPEYIHMRIAESILFAGKAVRVLRNPSSAF  305 (634)
Q Consensus       241 ~~~~~~~~~~~l~----------~~-----~~~~~~~~~W~~~f~l~~~~lP~fl~~~~a~~Il~~GK~l~~L~~~~~~~  305 (634)
                       ...+.+.++++.          ++     ..++....+|.++|.++.+++|+||++++|+|||.|||++++||.++...
T Consensus       215 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~w~~~y~l~~~~lP~Fl~~~~A~kIl~~GKsln~lr~~~~~~  293 (677)
T 3rip_A          215 -SAQPEEDEEDLGIGGLTGKQLRELQDLRLIEEENMLAPSLKQFSLRVEILPSYIPVRVAEKILFVGESVQMFENQNVNL  293 (677)
T ss_dssp             ---------------------------------------CCCCEEECGGGSCTTSCHHHHHHHHHHHHHHHTCCC-CCSC
T ss_pred             -cccccccccccccccccccccchhhhhhcccccccccchhcceeecHhhCcCccCHHHHHHHHHhhHHHHHHHccCCCC
Confidence             001111111110          00     00111234799999999999999999889999999999999999965431


Q ss_pred             hhhhhhhhhcccccccccccccccccchhhhhhhcccCCCcccHHHHHHHHhcccCCCCCchhhHHHHHHHHHHHHHHHH
Q 006711          306 RFQDQLITRSSQKIQGVTGRFSIQKEPLLDMKLIGEELLPQSDADKIEAMLQGLKEPSEFHKRSFECAVDSIRAIAASHL  385 (634)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~l~~~I~~~~~~~s~~l  385 (634)
                            ...+                          ..++ ....++.+.+.+++..++++...|+.+|+++|..+|+.|
T Consensus       294 ------~~~~--------------------------~~~~-~~~~~~~~~l~~L~~~~~~~~~~~e~~I~~~~~~as~~L  340 (677)
T 3rip_A          294 ------TRKG--------------------------SILK-NQEDTFAAELHRLKQQPLFSLVDFEQVVDRIRSTVAEHL  340 (677)
T ss_dssp             ------C-----------------------------CTTC-SHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ------Cccc--------------------------cccc-chHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHH
Confidence                  0000                          1222 223456666777777778888899999999999999999


Q ss_pred             HHHHHhhhcHHHHHHHhhhhhcccCCchHHHHHHHHHHhhcCCCCCCcchhccchHHHHHHhhhcccccccCCceeEEec
Q 006711          386 WQLVVVRANLNGHLKALKDYFLLEKGDFFQCFLEESRQLMRLPPRQSTAEADLMVPFQLAAIKTISEEDKYFSRVSLRMP  465 (634)
Q Consensus       386 ~~~l~~~~~L~~~L~~l~~~fLl~~Gdf~~~f~~~~~~~l~~~~~~~~~~~~l~~~l~~a~~~s~~~~d~~~~~l~~~~~  465 (634)
                      +++|+++++|.+||++||+||||++|||+..|++.++++|++|+.+.+ +++|+.+|+.|++.+..+++++.+++.+.+.
T Consensus       341 l~lL~~~~~L~~hL~~Lk~yfLL~~Gdf~~~f~~~~~~~L~~~~~~~~-~~~L~~~L~~a~~~~~~~~~~~~~~L~~~i~  419 (677)
T 3rip_A          341 WKLMVEESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPPTAVT-EHDVNVAFQQSAHKVLLDDDNLLPLLHLTIE  419 (677)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCCCTTH-HHHHHHHHHHHHHHTTCCCTTTGGGEEEEEC
T ss_pred             HHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCcccC-HHHHHHHHHHHHHHccCCchhhHhcceEEee
Confidence            999999999999999999999999999999999999999999988877 8999999999999887777778899999886


Q ss_pred             CCCcccCCCccchhhhhcccCCCCCCccCCCCCCCCccccceeeeeeecCCccccccCHHHHHHHHHHHHHHHHhhHHHH
Q 006711          466 SFGITVKSPHVDLLKAKAYADGTSGAALSSGNSDISLDGWDGIALEYSVDWPLQLFFTQEVLSKYCKVFQYLLRLKRTQM  545 (634)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~l~L~y~v~wPL~lilt~~~~~~Y~~IFr~Ll~lk~~~~  545 (634)
                      ..+....    +.+..   .   .+.+........+..+||.|.|+|+|||||++|||+++|.+|++||+|||++||+++
T Consensus       420 ~~~~~~~----~~~~~---~---~~~~~~~~~~~~~~~~~d~l~L~Y~v~~PL~liit~~~l~~Y~~iF~~Ll~lkr~~~  489 (677)
T 3rip_A          420 YHGKEHK----DATQA---R---EGPSRETSPREAPASGWAALGLSYKVQWPLHILFTPAVLEKYNVVFKYLLSVRRVQA  489 (677)
T ss_dssp             CCC---------------------------------CCTTTTEEEEECCCTTGGGTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccc----ccccc---c---cccccccccccCCccchheEEEEEeCCChHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            5432110    00000   0   000001112235678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhchhhhcccccccccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCH
Q 006711          546 ELEKSWASVMHQDHTYFAKHRNDRINYSKSQQRRQTCRPMWRVREHMAFLIRNLQFYIQVDVIETQWNILQAHIQESHDF  625 (634)
Q Consensus       546 ~L~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~m~~fv~~L~~Y~~~~VIe~~~~~l~~~l~~a~~l  625 (634)
                      .|+++|+.++..++.      .+    ..     ...++ +.+|++|+|||++|++|++++||+++|.+|++++++++|+
T Consensus       490 ~L~~~w~~~~~~~~~------~~----~~-----~~~~~-~~lr~~m~~Fv~~l~~Y~~~~Vie~~w~~~~~~l~~~~~~  553 (677)
T 3rip_A          490 ELQHCWALQMQRKHL------KS----NQ-----TDAIK-WRLRNHMAFLVDNLQYYLQVDVLESQFSQLLHQINSTRDF  553 (677)
T ss_dssp             HHHHHHHHHTSGGGC------CS----SH-----HHHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTCCCH
T ss_pred             HHHHHHHHHHhcccc------CC----Cc-----hhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCH
Confidence            999999987543321      11    00     11123 8999999999999999999999999999999999999999


Q ss_pred             HHHHhhhcC
Q 006711          626 TELVGFHQE  634 (634)
Q Consensus       626 dei~~~H~~  634 (634)
                      |+|+.+|++
T Consensus       554 d~l~~~H~~  562 (677)
T 3rip_A          554 ESIRLAHDH  562 (677)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999973

PyMOL of 3rip

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00