Citrus Sinensis ID: 006838

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------63
MKKPRNGFCSNETTIIKCQSSSNDTNKSKSNWNTDNKKKKNRSFYEFSLSLIILLWFLVFLFYSKLGLSHDNAAGNPPPDKGRTPSSCVGNDKFCDTANSYVTNATNNCPNGVLLETNNSSASCSDSVVHQQFVTHRYTLPETSRLEEVIWKVLNYAALFCEAQRHEEQTTKPKLSDGKVPHHTYLNFDEFRNITRQEKGWGVPSQLVNITHRFDPDGTEYNYASAMKGAKLVAHNKEAKGASNILGKDHNKYLRNPCSVAGKFVVIELGEETLVDTVKIANFEHYSSNFKEFELSGSLSYPTEVWSPLGKFVATNVKQLQSFKLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYGVDAIERMLEDLFVASEGSVPNKLPEPNSSTMPSSEPEVGSSDCNKSSKVQNGVKTDNIQVENIENAQLFNENVANPLPRAKIPDPVVEVRQHPIGRIPGDTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESKELAVLSVSLFFACFAIFKLVSARLSTLLRASQCSKVRRTNRGWVLILLSSSMTIFVTLLSG
cccccccccccccHHHHHcccccccccccccccccccccccccEEEEEEEHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccEEEEEEEcccEEEcEEEEEEcccccccccEEEEEEEccccccccEEcEEEEEEccccccEEEcccccEEEEEEEEEEEccccccEEEEEEEEEEcHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHccEEEEEEEccc
cccccccccccEEEEHEEcccccccccccccccccccccccccHHHEHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHcccccccccccccEEEEccccccccccccccccccccccccccccHHHHHHHHHcHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccEEEcccccccEccccHHHHHHEEHccHHccccHHHHccccHHHccccccccccEEEEEEcccEEEEEEEEEEEEEEcccccEEEEEEEccccccccEEccEEEEccccccEEccccccHHEEEEEEEEHHccccccEccEEEEEEEccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccccEEEEEEHHHHHHHHHHHcc
mkkprngfcsnettiikcqsssndtnksksnwntdnkkkknrsFYEFSLSLIILLWFLVFLFYSKlglshdnaagnpppdkgrtpsscvgndkfcdtANSYVtnatnncpngvlletnnssascsdsvVHQQFVthrytlpetsrlEEVIWKVLNYAALFCEAQrheeqttkpklsdgkvphhtylnfdefrnitrqekgwgvpsqlvnithrfdpdgteynYASAMKGAKLVAHnkeakgasnilgkdhnkylrnpcsvaGKFVVIELGEETLVDTVKianfehyssnfkefelsgslsyptevwsplgKFVATNVKQlqsfklpepkwvRYLKLNLLShygsefycTLSVVEVYGVDAIERMLEDLFVasegsvpnklpepnsstmpssepevgssdcnksskvqngvktdniqveNIENAqlfnenvanplprakipdpvvevrqhpigripgDTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIkensmlridvekvssdqanleSKELAVLSVSLFFACFAIFKLVSARLSTLLRAsqcskvrrtnrGWVLILLSSSMTIFVTLLSG
mkkprngfcsnettiikcqsssndtnksksnwntdnkkkknrSFYEFSLSLIILLWFLVFLFYSKLGLSHDNAAGNPPPDKGRTPSSCVGNDKFCDTANSYVTNATNNCPNGVLLETNNSSASCSDSVVHQQFVTHRytlpetsrLEEVIWKVLNYAALFCEAQRHEeqttkpklsdgkvphHTYLNFDEfrnitrqekgwgvpsqlVNITHRFDPDGTEYNYASAMKGAKLVAHNKEAKgasnilgkdhnkyLRNPCSVAGKFVVIELGEETLVDTVKIANFEHYSSNFKEFELSGSLSYPTEVWSPLGKFVATNVKQLqsfklpepkWVRYLKLNLLSHYGSEFYCTLSVVEVYGVDAIERMLEDLFVASegsvpnklpepnsstmpssepevgssdcNKSSKVQNGVKTDNIQVENIENAQLFNENVANPLPRAKIPDPVVEVRQHPIGRIPGDTVLRILMQKVKSLEQNLSVLEDYIKELNqrqqdvfpelDREITRIslllekskleLEELVKWRETmerglsdleswkTVVSFRVNElikensmlridVEKVSSDQANLESKELAVLSVSLFFACFAIFKLVSARLSTLLrasqcskvrrtnrgwvlillsssmtIFVTLLSG
MKKPRNGFCSNETTIIKCQsssndtnksksnwntDNKKKKNRSFYEfslsliillwflvflfYSKLGLSHDNAAGNPPPDKGRTPSSCVGNDKFCDTANSYVTNATNNCPNGVLLETNNSSASCSDSVVHQQFVTHRYTLPETSRLEEVIWKVLNYAALFCEAQRHEEQTTKPKLSDGKVPHHTYLNFDEFRNITRQEKGWGVPSQLVNITHRFDPDGTEYNYASAMKGAKLVAHNKEAKGASNILGKDHNKYLRNPCSVAGKFVVIELGEETLVDTVKIANFEHYSSNFKEFELSGSLSYPTEVWSPLGKFVATNVKQLQSFKLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYGVDAIERMLEDLFVASEGSVPNKLPEPNSSTMPSSEPEVGSSDCNKSSKVQNGVKTDNIQVENIENAQLFNENVANPLPRAKIPDPVVEVRQHPIGRIPGDTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRIslllekskleleelVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESKELAVLSVSLFFACFAIFKLVSARLSTLLRASQCSKVRRTNRGWVLILLSSSMTIFVTLLSG
******************************************SFYEFSLSLIILLWFLVFLFYSKLGL********************VGNDKFCDTANSYVTNATNNCPNGVLLETN***ASCSDSVVHQQFVTHRYTLPETSRLEEVIWKVLNYAALFCEA****************VPHHTYLNFDEFRNITRQEKGWGVPSQLVNITHRFDPDGTEYNYASAMKGAKLVAHN****GASNILGKDHNKYLRNPCSVAGKFVVIELGEETLVDTVKIANFEHYSSNFKEFELSGSLSYPTEVWSPLGKFVATNVKQLQSFKLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYGVDAIERMLEDLFVA************************************************IENAQLFNENVANPL*RAKIPDPVVEVRQHPIGRIPGDTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEK*********SKELAVLSVSLFFACFAIFKLVSARLSTLLRASQCSKVRRTNRGWVLILLSSSMTIFVTLL**
***********ETTII***************************FYEFSLSLIILLWFLVFLFYSKLGLSHD*****************************************************************************************************************************************************YNYASAMKGAKLVA**********ILGKDHNKYLRNPCSVAGKFVVIELGEETLVDTVKIANFEHYSSNFKEFELSGSLSYPTEVWSPLGKFVATNVKQLQSFKLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYGVDAIERMLED*****************************************************************************************************************************************************************DLESWKTVVSFRVNELIKE*SMLRIDVEKVSSDQANLESKELAVLSVSLFFACFAIFKLVSARLSTLLRASQCSKVRRTNRGWVLILLSSSMTIFVTLLSG
MKKPRNGFCSNETTIIKCQ*****************KKKKNRSFYEFSLSLIILLWFLVFLFYSKLGLSHDNAAG***********SCVGNDKFCDTANSYVTNATNNCPNGVLLETNNS********VHQQFVTHRYTLPETSRLEEVIWKVLNYAALFCEAQR************GKVPHHTYLNFDEFRNITRQEKGWGVPSQLVNITHRFDPDGTEYNYASAMKGAKLVAHNKEAKGASNILGKDHNKYLRNPCSVAGKFVVIELGEETLVDTVKIANFEHYSSNFKEFELSGSLSYPTEVWSPLGKFVATNVKQLQSFKLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYGVDAIERMLEDLFVASEGSV*****************************VQNGVKTDNIQVENIENAQLFNENVANPLPRAKIPDPVVEVRQHPIGRIPGDTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESKELAVLSVSLFFACFAIFKLVSARLSTLLRASQCSKVRRTNRGWVLILLSSSMTIFVTLLSG
*****NGFCSNETTIIKCQSS*******************NRSFYEFSLSLIILLWFLVFLFYSKLGLSH*****************************************GV**E*********************YTLPETSRLEEVIWKVLNYAALFCEAQ*********************LNF**FRNITRQE***********ITHRF*PDGTEYNYASAMKGAKLVAHNKEAKGASNILGKDHNKYLRNPCSVAGKFVVIELGEETLVDTVKIANFEHYSSNFKEFELSGSLSYPTEVWSPLGKFVATNVKQLQSFKLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYGVDAIERMLEDLFV***********************************************************************************IPGDTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESKELAVLSVSLFFACFAIFKLVSARLSTLLRASQCSKVRRTNRGWVLILLSSSMTIFVTLLSG
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MKKPRNGFCSNETTIIKCQSSSNDTNKSKSNWNTDNKKKKNRSFYEFSLSLIILLWFLVFLFYSKLGLSHDNAAGNPPPDKGRTPSSCVGNDKFCDTANSYVTNATNNCPNGVLLETNNSSASCSDSVVHQQFVTHRYTLPETSRLEEVIWKVLNYAALFCEAQRHEEQTTKPKLSDGKVPHHTYLNFDEFRNITRQEKGWGVPSQLVNITHRFDPDGTEYNYASAMKGAKLVAHNKEAKGASNILGKDHNKYLRNPCSVAGKFVVIELGEETLVDTVKIANFEHYSSNFKEFELSGSLSYPTEVWSPLGKFVATNVKQLQSFKLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYGVDAIERMLEDLFVASEGSVPNKLPEPNSSTMPSSEPEVGSSDCNKSSKVQNGVKTDNIQVENIENAQLFNENVANPLPRAKIPDPVVEVRQHPIGRIPGDTVxxxxxxxxxxxxxxxxxxxxxxxxxxxxQQDVFPELDREITRISLLLEKSKLELEELVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESKELAVLSVSLFFACFAIFKLVSARLSTLLRASQCSKVRRTNRGWVLILLSSSMTIFVTLLSG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query629 2.2.26 [Sep-21-2011]
O59729659 Uncharacterized protein s yes no 0.232 0.221 0.483 3e-33
Q12232587 Uncharacterized protein S yes no 0.408 0.437 0.307 3e-30
Q54MI3 1278 SUN domain-containing pro yes no 0.232 0.114 0.444 1e-27
Q9UBS9 1254 SUN domain-containing oss yes no 0.228 0.114 0.427 3e-24
Q8C341 1250 SUN domain-containing oss yes no 0.228 0.115 0.427 6e-24
Q710E6 1253 SUN domain-containing oss yes no 0.228 0.114 0.427 6e-24
>sp|O59729|SLPI_SCHPO Uncharacterized protein slp1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=slp1 PE=3 SV=1 Back     alignment and function desciption
 Score =  144 bits (362), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 72/149 (48%), Positives = 98/149 (65%), Gaps = 3/149 (2%)

Query: 221 YNYASAMKGAKLVAHNKEAKGASNILGKDHNKYLRNPCSVAGKFVVIELGEETLVDTVKI 280
           +N+AS    A ++  N EA G+S+IL ++ +KY+ N CS   KFVVIEL E+  VDTV+I
Sbjct: 193 FNFASTDCAAAVIKTNPEAVGSSSILTENKDKYMLNKCSAENKFVVIELCEDIYVDTVQI 252

Query: 281 ANFEHYSSNFKEFELSGSLSYPT--EVWSPLGKFVATNVKQLQSFKLPEP-KWVRYLKLN 337
           ANFE +SS F++F++S S  YP     W  LG F A N++ LQSF +  P  W +YLK+ 
Sbjct: 253 ANFEFFSSIFRDFKVSVSGKYPKYESSWMELGTFTALNLRTLQSFHIENPLIWAKYLKIE 312

Query: 338 LLSHYGSEFYCTLSVVEVYGVDAIERMLE 366
            L+HYGSEFYC +S++ VYG   IE   E
Sbjct: 313 FLTHYGSEFYCPVSLLRVYGKTMIEEFEE 341

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
>sp|Q12232|SLP1_YEAST Uncharacterized protein SLP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SLP1 PE=1 SV=1 Back     alignment and function description
>sp|Q54MI3|SUN2_DICDI SUN domain-containing protein 2 OS=Dictyostelium discoideum GN=sun2 PE=3 SV=1 Back     alignment and function description
>sp|Q9UBS9|SUCO_HUMAN SUN domain-containing ossification factor OS=Homo sapiens GN=SUCO PE=1 SV=1 Back     alignment and function description
>sp|Q8C341|SUCO_MOUSE SUN domain-containing ossification factor OS=Mus musculus GN=Suco PE=1 SV=3 Back     alignment and function description
>sp|Q710E6|SUCO_RAT SUN domain-containing ossification factor OS=Rattus norvegicus GN=Suco PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query629
225426292613 PREDICTED: uncharacterized protein LOC10 0.941 0.965 0.575 0.0
255537839584 conserved hypothetical protein [Ricinus 0.898 0.967 0.601 0.0
224072216471 predicted protein [Populus trichocarpa] 0.734 0.980 0.638 1e-169
449452406610 PREDICTED: uncharacterized protein LOC10 0.901 0.929 0.535 1e-166
356495725486 PREDICTED: uncharacterized protein LOC10 0.764 0.989 0.557 1e-147
224058192417 predicted protein [Populus trichocarpa] 0.659 0.995 0.580 1e-140
297803736577 hypothetical protein ARALYDRAFT_354376 [ 0.866 0.944 0.48 1e-136
449517491415 PREDICTED: uncharacterized protein SLP1- 0.632 0.959 0.6 1e-134
240256051561 Galactose-binding protein [Arabidopsis t 0.836 0.937 0.467 1e-130
334186869562 Galactose-binding protein [Arabidopsis t 0.836 0.935 0.466 1e-129
>gi|225426292|ref|XP_002265286.1| PREDICTED: uncharacterized protein LOC100259778 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/646 (57%), Positives = 452/646 (69%), Gaps = 54/646 (8%)

Query: 1   MKKPRNG-----FCSNETTIIKCQSSSNDTNKSKSNWNTDNKKKKNRSFYEFSLSLIILL 55
           MKKPRNG     FC N                      ++N+K    SF+E SLSLI  L
Sbjct: 1   MKKPRNGSINTKFCGN----------------------SENRK----SFFELSLSLIFSL 34

Query: 56  WFLVFLFYSKLGLSHDNAA---------GNPPPDKGRTPSSCVGNDKFCDTANSYVTNAT 106
           W LVFLFYSK GLSH N            N  PD    P S V N + C++A SYV N +
Sbjct: 35  WCLVFLFYSKRGLSHGNGGKWNPMHFFLANSHPDNRSMPYSTVCNGELCNSAYSYVANGS 94

Query: 107 NNCPNGVLLETNNSSASCSDSVVHQQFVTHRYTLPETSRLEEVIWKVLNYAALFCEAQRH 166
           +N  NG LLE N  S   ++S + +      ++L ETS LEE++W +L Y AL CE Q  
Sbjct: 95  SNHMNGTLLEFN-ISMHRNESAIPRDSENLEFSLKETSSLEELVWSILGYTALVCEVQLQ 153

Query: 167 EEQTTKPKLSDGKVP----HHTYLNFDEFRNITRQEKGWGVPSQLVNITHRFDPDGTEYN 222
             +  K  +++ ++P    H TY+N DEFRN TRQE+ W +PSQLVNITH  +PDGTEYN
Sbjct: 154 PLEEQKKHIAE-QIPSERTHSTYINLDEFRNTTRQERSWSMPSQLVNITHHLEPDGTEYN 212

Query: 223 YASAMKGAKLVAHNKEAKGASNILGKDHNKYLRNPCSVAGKFVVIELGEETLVDTVKIAN 282
           YAS  KGAK+VAHNKEAKGASNILGKDH+KYLRN CSV  KFVV+EL EETLVD +KIAN
Sbjct: 213 YASVSKGAKVVAHNKEAKGASNILGKDHDKYLRNACSVGEKFVVVELAEETLVDAIKIAN 272

Query: 283 FEHYSSNFKEFELSGSLSYPTEVWSPLGKFVATNVKQLQSFKLPEPKWVRYLKLNLLSHY 342
           FEHYSSN KEF LSGSLSYPTE W  LG FVA NVK  QSFKLPEPKWVRYLKLNL++HY
Sbjct: 273 FEHYSSNVKEFTLSGSLSYPTEKWFLLGNFVAANVKHAQSFKLPEPKWVRYLKLNLITHY 332

Query: 343 GSEFYCTLSVVEVYGVDAIERMLEDLFVASEGSVPNKLPEPNSSTMPSSEPEVGSSDCNK 402
           GSEFYC LSV EVYGVDAIERMLEDL VA+E   P K   PNSS+MPSSEP     D   
Sbjct: 333 GSEFYCILSVFEVYGVDAIERMLEDLIVANEDPTPGKFVNPNSSSMPSSEP----IDRKI 388

Query: 403 SSKVQNGVKTDNIQVENIENAQLFNENVA-NPLPRAKIPDPVVEVRQHPIGRIPGDTVLR 461
             ++Q GV       EN  +A +    +  +P    KIPDPVVEVRQ P GRIPGDTVL+
Sbjct: 389 KGELQIGVGKG---TENTGDAPIARVGMTKDPAAMHKIPDPVVEVRQMPTGRIPGDTVLK 445

Query: 462 ILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRISLLLEKSKLELEELVKWRE 521
           ILMQKV+SLE NLSVLE+YIKELN+R+ +V PELD+E++RISLLLEKS+ E+++L++W+E
Sbjct: 446 ILMQKVRSLELNLSVLEEYIKELNRREGNVLPELDKELSRISLLLEKSRAEIKDLLEWKE 505

Query: 522 TMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESKELAVLSVSLFFAC 581
             E+G++DLESWKT VS +V EL +EN MLR+DV+KV ++Q++LE+KELAV++VS   AC
Sbjct: 506 ITEKGITDLESWKTAVSSQVQELARENDMLRLDVKKVVTEQSSLENKELAVVAVSFSIAC 565

Query: 582 FAIFKLVSARLSTLLRASQCSKVRRTNRGWVLILLSSSMTIFVTLL 627
            A+ KLVS R+ TL  A+Q  +V + +RGWVLIL+SSSM IF+T L
Sbjct: 566 VAVLKLVSDRVLTLFGAAQSGEVGQKSRGWVLILVSSSMMIFITFL 611

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255537839|ref|XP_002509986.1| conserved hypothetical protein [Ricinus communis] gi|223549885|gb|EEF51373.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224072216|ref|XP_002303657.1| predicted protein [Populus trichocarpa] gi|222841089|gb|EEE78636.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449452406|ref|XP_004143950.1| PREDICTED: uncharacterized protein LOC101208720 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356495725|ref|XP_003516724.1| PREDICTED: uncharacterized protein LOC100788558 [Glycine max] Back     alignment and taxonomy information
>gi|224058192|ref|XP_002299462.1| predicted protein [Populus trichocarpa] gi|222846720|gb|EEE84267.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297803736|ref|XP_002869752.1| hypothetical protein ARALYDRAFT_354376 [Arabidopsis lyrata subsp. lyrata] gi|297315588|gb|EFH46011.1| hypothetical protein ARALYDRAFT_354376 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449517491|ref|XP_004165779.1| PREDICTED: uncharacterized protein SLP1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|240256051|ref|NP_194126.5| Galactose-binding protein [Arabidopsis thaliana] gi|332659431|gb|AEE84831.1| Galactose-binding protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334186869|ref|NP_001190819.1| Galactose-binding protein [Arabidopsis thaliana] gi|332659432|gb|AEE84832.1| Galactose-binding protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query629
TAIR|locus:504956296660 AT1G22882 "AT1G22882" [Arabido 0.682 0.65 0.441 4.6e-89
TAIR|locus:2825334596 AT1G71360 "AT1G71360" [Arabido 0.709 0.748 0.404 5.4e-86
CGD|CAL0004434558 orf19.4738 [Candida albicans ( 0.507 0.571 0.315 6.4e-35
UNIPROTKB|Q5APM8558 CaO19.12200 "Putative uncharac 0.507 0.571 0.315 6.4e-35
SGD|S000005680587 SLP1 "Glycosylated integral ER 0.434 0.465 0.312 1.2e-30
POMBASE|SPBC3E7.09659 SPBC3E7.09 "Sad1-UNC-like prot 0.594 0.567 0.287 5.1e-30
DICTYBASE|DDB_G0285925 1278 sunB "SUN domain-containing pr 0.373 0.183 0.362 9.4e-29
ASPGD|ASPL0000100306 1428 AN12337 [Emericella nidulans ( 0.338 0.149 0.339 2.6e-26
ASPGD|ASPL0000098778 1428 acdA [Emericella nidulans (tax 0.338 0.149 0.339 2.6e-26
UNIPROTKB|F1NP61 1253 C8H1orf9 "Uncharacterized prot 0.228 0.114 0.421 8.1e-22
TAIR|locus:504956296 AT1G22882 "AT1G22882" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 889 (318.0 bits), Expect = 4.6e-89, P = 4.6e-89
 Identities = 197/446 (44%), Positives = 270/446 (60%)

Query:   186 LNFDEFRNITRQEKGWGVPSQLVNITHRFDPDGTEYNYASAMKGAKLVAHNKEAKGASNI 245
             L  DEF++     +   +  Q+  + HR +P G EYNYASA KGAK+++ NKEAKGA++I
Sbjct:   228 LGLDEFKSRASNSRNKSLSDQVSGVIHRMEPGGKEYNYASASKGAKVLSSNKEAKGAASI 287

Query:   246 LGKDHNKYLRNPCSVAGKFVVIELGEETLVDTVKIANFEHYSSNFKEFELSGSLSYPTEV 305
             L +D++KYLRNPCS  GKFVV+EL EETLV+T+KIANFEHYSSN KEFEL G+L YPT+ 
Sbjct:   288 LSRDNDKYLRNPCSTEGKFVVVELSEETLVNTIKIANFEHYSSNLKEFELQGTLVYPTDT 347

Query:   306 WSPLGKFVATNVKQLQSFKLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYGVDAIERML 365
             W  +G F A+NVK  Q+F L EPKWVRYLKLN +SHYGSEFYCTLS++EVYGVDA+ERML
Sbjct:   348 WVHMGNFTASNVKHEQNFTLLEPKWVRYLKLNFISHYGSEFYCTLSLIEVYGVDAVERML 407

Query:   366 EDLFVASEGSVPNKLPEPNSSTMPSSEPEVGSSDCNKSS-KVQNGVKTDNIQVENIENAQ 424
             EDL    +     K  E +S        ++ S + +  + K  +  K      EN+    
Sbjct:   408 EDLISVQDNKNAYKPREGDSEHKEKPMQQIESLEGDDGADKSTHREKEKEAPPENM---- 463

Query:   425 LFNENVANPLPRAKIPDPVVEVRQH-PIGRIPGDTVLRILMQKVKSLEQNLSVLEDYIKE 483
             L     +      K+ +PV E+R H P  R+PGDTVL+ILMQK++SL+ NLS+LE Y++E
Sbjct:   464 LAKTEASMAKSSNKLSEPVEEMRHHQPGSRMPGDTVLKILMQKLRSLDLNLSILERYLEE 523

Query:   484 LNQRQQDVFPELDREITRIXXXXXXXXXXXXXXVKWR-ETMERGLSDLESWKTVVSFRVN 542
             LN R  ++F E+DRE   +              +K R E M     +++ W+  V   + 
Sbjct:   524 LNLRYGNIFKEMDRE-AGVREKAIVALRLDLEGMKERQEGMVSEAEEMKEWRKRVEAEME 582

Query:   543 ELIKENSMLRIDVEKVSSDQANLESKELAVLSVSLFFACFAIFKLVSARLSTLLRASQCS 602
             +  KE   +R  +E+VS     +E K L V +V L F   A+  +V   + T L      
Sbjct:   583 KAEKEKENIRQSLEQVSKRLEWMEKKCLTVFTVCLGFGIIAVIAVVIG-MGTGL------ 635

Query:   603 KVRRTNRG-WVLILLSSSMTIFVTLL 627
                +T  G W+L+L+SS+  +FV  L
Sbjct:   636 -AEKTGSGAWLLLLISSTFIMFVLSL 660
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2825334 AT1G71360 "AT1G71360" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
CGD|CAL0004434 orf19.4738 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5APM8 CaO19.12200 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
SGD|S000005680 SLP1 "Glycosylated integral ER membrane protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
POMBASE|SPBC3E7.09 SPBC3E7.09 "Sad1-UNC-like protein involved protein folding in the ER (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0285925 sunB "SUN domain-containing protein B" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ASPGD|ASPL0000100306 AN12337 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
ASPGD|ASPL0000098778 acdA [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|F1NP61 C8H1orf9 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00031138
hypothetical protein (472 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query629
pfam07738135 pfam07738, Sad1_UNC, Sad1 / UNC-like C-terminal 7e-39
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.002
>gnl|CDD|203750 pfam07738, Sad1_UNC, Sad1 / UNC-like C-terminal Back     alignment and domain information 
 Score =  139 bits (352), Expect = 7e-39
 Identities = 57/135 (42%), Positives = 75/135 (55%), Gaps = 10/135 (7%)

Query: 235 HNKEAKGASNILGKDHNKYLRNPC-SVAGK--FVVIELGEETLVDTVKIANFEH----YS 287
            N EAK    IL  D + Y+  PC S  G   FVVIEL E  +V+ V + + E     YS
Sbjct: 1   LNYEAKPPKVILQPDKDSYMPGPCWSFKGSRGFVVIELSEFIIVEAVTLEHVEKSVAPYS 60

Query: 288 SNFKEFELSGSLSYPTEVWSPLGKF-VATNVKQLQSFKLPEPK--WVRYLKLNLLSHYGS 344
           S  K+FE+SGS  YP   W  LGKF    + K +Q+F+L  P   WV+Y+KL +LS+YG+
Sbjct: 61  SAPKDFEVSGSDRYPDTKWVLLGKFTYDLDGKTIQTFQLENPPDIWVKYVKLRILSNYGN 120

Query: 345 EFYCTLSVVEVYGVD 359
           E Y  L    V+G  
Sbjct: 121 EHYTCLYRFRVHGTV 135

The C. elegans UNC-84 protein is a nuclear envelope protein that is involved in nuclear anchoring and migration during development. The S. pombe Sad1 protein localises at the spindle pole body. UNC-84 and and Sad1 share a common C-terminal region, that is often termed the SUN (Sad1 and UNC) domain. In mammals, the SUN domain is present in two proteins, Sun1 and Sun2. The SUN domain of Sun2 has been demonstrated to be in the periplasm. Length = 135
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 629
KOG1396530 consensus Uncharacterized conserved protein [Funct 100.0
PF07738135 Sad1_UNC: Sad1 / UNC-like C-terminal ; InterPro: I 99.97
KOG2687414 consensus Spindle pole body protein, contains UNC- 99.77
cd00057143 FA58C Substituted updates: Jan 31, 2002 98.65
PF00754129 F5_F8_type_C: F5/8 type C domain; InterPro: IPR000 98.2
PF06588199 Muskelin_N: Muskelin N-terminus; InterPro: IPR0105 97.76
KOG2437 723 consensus Muskelin [Signal transduction mechanisms 97.25
cd08366139 APC10 APC10 subunit of the anaphase-promoting comp 97.0
cd08667131 APC10-ZZEF1 APC10/DOC1-like domain of uncharacteri 96.85
cd08159129 APC10-like APC10-like DOC1 domains in E3 ubiquitin 96.56
PF03256193 APC10: Anaphase-promoting complex, subunit 10 (APC 96.31
cd08665131 APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit 95.91
smart00231139 FA58C Coagulation factor 5/8 C-terminal domain, di 95.66
PF03904230 DUF334: Domain of unknown function (DUF334); Inter 95.44
PRK10884206 SH3 domain-containing protein; Provisional 94.57
PF03561152 Allantoicase: Allantoicase repeat; InterPro: IPR01 94.57
cd08365131 APC10-like1 APC10-like DOC1 domains of E3 ubiquiti 94.43
cd08666134 APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a H 94.08
TIGR02961322 allantoicase allantoicase. A different but similar 93.95
PRK13257336 allantoicase; Provisional 93.29
PF14652329 DUF4457: Domain of unknown function (DUF4457) 93.16
PF07889126 DUF1664: Protein of unknown function (DUF1664); In 92.81
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 92.77
PRK13257336 allantoicase; Provisional 92.75
PHA02562562 46 endonuclease subunit; Provisional 92.16
PF01544292 CorA: CorA-like Mg2+ transporter protein; InterPro 91.58
PF04111 314 APG6: Autophagy protein Apg6; InterPro: IPR007243 91.25
TIGR00383318 corA magnesium Mg(2+) and cobalt Co(2+) transport 91.06
TIGR02961322 allantoicase allantoicase. A different but similar 91.05
COG0598322 CorA Mg2+ and Co2+ transporters [Inorganic ion tra 90.85
PRK13797516 putative bifunctional allantoicase/OHCU decarboxyl 90.81
PRK09546324 zntB zinc transporter; Reviewed 90.24
KOG4276113 consensus Predicted hormone receptor interactor [G 90.07
smart00607151 FTP eel-Fucolectin Tachylectin-4 Pentaxrin-1 Domai 89.65
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 89.52
PF10267395 Tmemb_cc2: Predicted transmembrane and coiled-coil 89.48
PHA02562 562 46 endonuclease subunit; Provisional 89.32
PF00038 312 Filament: Intermediate filament protein; InterPro: 89.13
PRK13797516 putative bifunctional allantoicase/OHCU decarboxyl 88.76
cd08664152 APC10-HERC2 APC10-like DOC1 domain present in HERC 88.64
KOG1396530 consensus Uncharacterized conserved protein [Funct 87.91
KOG2662414 consensus Magnesium transporters: CorA family [Ino 86.2
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 86.15
cd07912 418 Tweety_N N-terminal domain of the protein encoded 85.59
PF05700221 BCAS2: Breast carcinoma amplified sequence 2 (BCAS 85.09
COG3206458 GumC Uncharacterized protein involved in exopolysa 84.89
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 84.57
PF03904230 DUF334: Domain of unknown function (DUF334); Inter 84.51
PRK04863 1486 mukB cell division protein MukB; Provisional 84.29
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 84.21
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 84.14
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 83.91
KOG3437184 consensus Anaphase-promoting complex (APC), subuni 83.88
PF05701 522 WEMBL: Weak chloroplast movement under blue light; 82.36
KOG0971 1243 consensus Microtubule-associated protein dynactin 82.22
PF07888 546 CALCOCO1: Calcium binding and coiled-coil domain ( 81.93
PF07106169 TBPIP: Tat binding protein 1(TBP-1)-interacting pr 81.02
PF06201152 PITH: PITH domain; InterPro: IPR010400 The full-le 80.91
PF14662193 CCDC155: Coiled-coil region of CCDC155 80.68
COG1561290 Uncharacterized stress-induced protein [Function u 80.58
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 80.28
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 80.27
PF05911 769 DUF869: Plant protein of unknown function (DUF869) 80.26
PRK09841 726 cryptic autophosphorylating protein tyrosine kinas 80.16
>KOG1396 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=5.7e-67  Score=556.57  Aligned_cols=405  Identities=32%  Similarity=0.397  Sum_probs=311.2

Q ss_pred             cccccccCCCCCcccccccccCceEeeccccccccCcccccCcccccccccCCCCcEEEEEecceeeecEEEEeeccccc
Q 006838          208 VNITHRFDPDGTEYNYASAMKGAKLVAHNKEAKGASNILGKDHNKYLRNPCSVAGKFVVIELGEETLVDTVKIANFEHYS  287 (629)
Q Consensus       208 ~~~~hr~~p~g~~~NYAS~d~GAkIl~sn~eakgasnIL~~nkD~YMLnPCsa~~kfVVIELcEeI~V~~I~IANfE~fS  287 (629)
                      .+..|+.+|+++||||||.+||||||++||+|+|+++||.+|+|+||||||++++|||||||||+|+|++|.||||||||
T Consensus       113 ~ge~~~~~p~~kr~NyAS~~cgAkIi~~n~ea~~~~ail~~dkd~yllnpcss~~K~vviel~e~~lv~~~~ian~e~~s  192 (530)
T KOG1396|consen  113 NGEKAIKKPQKKRYNYASAECGAKILAANPEAKGASAILLEDKDKYLLNPCSSEKKFVVIELCERILVNTLRIANFEHFS  192 (530)
T ss_pred             CceeeeecCCccccchhhhhhhhHHHhcChhhccchhhhhhchHHHhhcccccccceEEeehhHHHhhhheeeeeecccC
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEeeccCCCCCceeeEEEEeeccccceeeeCCCCceEEEEEEEEeeccCCcceeeeeEEEEeccchHHHHHHh
Q 006838          288 SNFKEFELSGSLSYPTEVWSPLGKFVATNVKQLQSFKLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYGVDAIERMLED  367 (629)
Q Consensus       288 S~pKdF~VsgS~~YPt~~W~~LG~F~a~N~R~~Q~F~L~~~~w~RYLKle~LSHyGsE~YC~LS~vrVyG~t~vE~~leD  367 (629)
                      |.||+|+|++|.+||+..|..||+|+|.|.|+.|+|++.++.|+|||||+++||||+|||||||+|||||++|+|+|.+|
T Consensus       193 s~pk~f~v~~s~~~P~~~w~~~G~f~a~N~r~lQsF~~n~~~wakYlKIellsHygsEfyCpvSli~VyG~tm~Ee~ee~  272 (530)
T KOG1396|consen  193 SPPKDFSVSISIRYPTPSWIHLGQFHARNERNLQSFPLNEQKWAKYLKIELLSHYGSEFYCPVSLIRVYGKTMVEEYEED  272 (530)
T ss_pred             CCCCceeeccccccCCccceecCcccccchhhhcCCCCCchhhhhHhhhhhhhhcccccccchhhhhhhchhHHHHHHHH
Confidence            99999999999999999999999999999999999998778999999999999999999999999999999999999999


Q ss_pred             hhhcCCCCCCCC-CCCCCC-----CCCCCCCCCCCCCCCCCCccccc-Cccccccccccccccccc-c--ccCCCCCCCC
Q 006838          368 LFVASEGSVPNK-LPEPNS-----STMPSSEPEVGSSDCNKSSKVQN-GVKTDNIQVENIENAQLF-N--ENVANPLPRA  437 (629)
Q Consensus       368 ~i~~~~~~~~~~-~~~~~~-----~~~~~~~pe~~~~~~~~~~~~~~-~~d~~~~~~~n~~~~~~~-~--~~~~~~~~~~  437 (629)
                      .+.+++...... ..+++.     +......++..+...+..-..+. ..|.-...   +...++. +  .....+....
T Consensus       273 ~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~e~~~~~tk~~~~~~~~~~n~~~~~---s~~i~~~~~~iv~~~~~~~~p  349 (530)
T KOG1396|consen  273 NDSAQESNVQELFEEDYDYPLDPQTGQDKSSKEVTGSATKQTVNMVNIAANILSAK---SEDITEKNSEIVENATATKAP  349 (530)
T ss_pred             HHHHHHHHHHHhhhcCcccCCCccccccccCccCccccccchhhhhhcccchhccc---cccccccchhheecccccccc
Confidence            887665311110 011111     11111112122222221110000 00000000   0011110 0  1122334567


Q ss_pred             CCCCCccceeecCCCCCCchhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHH--HHHHHHhHHHHHH
Q 006838          438 KIPDPVVEVRQHPIGRIPGDTVLRILMQKVKSLEQNLSVLEDYIKELNQRQQDVFPELDREITRI--SLLLEKSKLELEE  515 (629)
Q Consensus       438 ~~~~p~~e~~q~~~~r~~gdSVlKiLmqKvksLE~N~Slle~YiEeln~ry~~~f~~l~~el~~~--~~~Lek~~aeI~~  515 (629)
                      +.|++++....+++.++|++.|+|++|++.+.||.+.|..+.|++|+..+++..|..+++.+.+.  ....+.+..++--
T Consensus       350 k~p~~~~~s~~~~~p~~~~t~v~k~~m~~~~~l~a~~s~i~~~vqe~~~~~s~~~~~l~~~~~~~~~~~~t~~~~~~~~~  429 (530)
T KOG1396|consen  350 KKPDSVEVSKNLPSPEIPTTEVHKRDMKPSRGLEAKRSPIVKYVQEREELLSKSFETLLKSLEKEWFESETQIFEEELMT  429 (530)
T ss_pred             ccccccccccCCCCCcCcchhHhhhhhccccccchhhhhHHHHHHHHHHhhhhhHHHHHhhhhhhhchhHHHHhhhhhhh
Confidence            88999988888899999999999999999999999999999999999999999999999988877  1111111111111


Q ss_pred             HHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006838          516 LVKWRETMERGLSDLESWKTVVSFRVNELIKENSMLRIDVEKVSSDQANLESKELAVLSVSLFFACFAIFKLVSARLSTL  595 (629)
Q Consensus       516 L~e~K~~~ek~~~~l~swks~VSsqLd~l~reN~~LR~~Ve~v~~~q~~mEnK~laVl~isl~f~~la~~~l~~~~~~~~  595 (629)
                      +++  +..-.+.+...-|...|+.+|..+..++.-.-..++++-++.+.+|...++||..+..|+-.+++-....++-  
T Consensus       430 ~~~--e~~~~~~~~~~~sl~~~~~~l~~~~~~~~~~~~~l~~l~k~~~~~e~~~~~~~~~l~gl~~~~~i~r~~~~~~--  505 (530)
T KOG1396|consen  430 ILE--ESSKSEAIYKWPSLRVVEERLLSATAETNGKLLLLEALPKRLSFQERVLVLVLTPLSGLLEYTVIEREAETVV--  505 (530)
T ss_pred             hhh--hcccHHhhhccchhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHHhhheeehhhhHHHHHHHHhhhccccee--
Confidence            111  1222334445667788899999999999999999999999999999999999999988876665443332222  


Q ss_pred             HHhhhcccccccCccchhhhhhhhHHHHhhh
Q 006838          596 LRASQCSKVRRTNRGWVLILLSSSMTIFVTL  626 (629)
Q Consensus       596 ~~~~~~~~~~~~~~~w~~ll~ss~~~~fi~~  626 (629)
                           .+  ..+++.|...|.++++-.+|+.
T Consensus       506 -----~~--~~~~~~~~~~~~~~~~~~~~~~  529 (530)
T KOG1396|consen  506 -----LG--SKNSSIEADDLVNSTVDAVILE  529 (530)
T ss_pred             -----cc--ccCCchhhhhhHHHHHHHhhcC
Confidence                 11  5577889999999999998864

>PF07738 Sad1_UNC: Sad1 / UNC-like C-terminal ; InterPro: IPR012919 The Caenorhabditis elegans UNC-84 protein is a nuclear envelope protein that is involved in nuclear anchoring and migration during development Back     alignment and domain information
>KOG2687 consensus Spindle pole body protein, contains UNC-84 domain [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd00057 FA58C Substituted updates: Jan 31, 2002 Back     alignment and domain information
>PF00754 F5_F8_type_C: F5/8 type C domain; InterPro: IPR000421 Blood coagulation factors V and VIII contain a C-terminal, twice repeated, domain of about 150 amino acids, which is called F5/8 type C, FA58C, or C1/C2- like domain Back     alignment and domain information
>PF06588 Muskelin_N: Muskelin N-terminus; InterPro: IPR010565 This entry represents the N-terminal region of muskelin and is found in conjunction with several IPR006652 from INTERPRO repeats Back     alignment and domain information
>KOG2437 consensus Muskelin [Signal transduction mechanisms] Back     alignment and domain information
>cd08366 APC10 APC10 subunit of the anaphase-promoting complex (APC) that mediates substrate ubiquitination Back     alignment and domain information
>cd08667 APC10-ZZEF1 APC10/DOC1-like domain of uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) and homologs Back     alignment and domain information
>cd08159 APC10-like APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination Back     alignment and domain information
>PF03256 APC10: Anaphase-promoting complex, subunit 10 (APC10); InterPro: IPR004939 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase Back     alignment and domain information
>cd08665 APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit of the SCF-ROC1-like E3 ubiquitin ligase complex that mediates substrate ubiquitination Back     alignment and domain information
>smart00231 FA58C Coagulation factor 5/8 C-terminal domain, discoidin domain Back     alignment and domain information
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PF03561 Allantoicase: Allantoicase repeat; InterPro: IPR015908 Allantoicase (also known as allantoate amidinohydrolase) is involved in purine degradation, facilitating the utilization of purines as secondary nitrogen sources under nitrogen-limiting conditions Back     alignment and domain information
>cd08365 APC10-like1 APC10-like DOC1 domains of E3 ubiquitin ligases that mediate substrate ubiquitination Back     alignment and domain information
>cd08666 APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a HECT E3 ubiquitin ligase protein that mediates substrate ubiquitination Back     alignment and domain information
>TIGR02961 allantoicase allantoicase Back     alignment and domain information
>PRK13257 allantoicase; Provisional Back     alignment and domain information
>PF14652 DUF4457: Domain of unknown function (DUF4457) Back     alignment and domain information
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>PRK13257 allantoicase; Provisional Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ] Back     alignment and domain information
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA) Back     alignment and domain information
>TIGR02961 allantoicase allantoicase Back     alignment and domain information
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK13797 putative bifunctional allantoicase/OHCU decarboxylase; Provisional Back     alignment and domain information
>PRK09546 zntB zinc transporter; Reviewed Back     alignment and domain information
>KOG4276 consensus Predicted hormone receptor interactor [General function prediction only] Back     alignment and domain information
>smart00607 FTP eel-Fucolectin Tachylectin-4 Pentaxrin-1 Domain Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PRK13797 putative bifunctional allantoicase/OHCU decarboxylase; Provisional Back     alignment and domain information
>cd08664 APC10-HERC2 APC10-like DOC1 domain present in HERC2 (HECT domain and RLD2) Back     alignment and domain information
>KOG1396 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels Back     alignment and domain information
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function Back     alignment and domain information
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>KOG3437 consensus Anaphase-promoting complex (APC), subunit 10 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences Back     alignment and domain information
>PF06201 PITH: PITH domain; InterPro: IPR010400 The full-length, Txnl1, protein which is a probable component of the 32 kDa 26S proteasome, uses its C-terminal, PITH, domain to associate specifically with the 26S proteasome Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>COG1561 Uncharacterized stress-induced protein [Function unknown] Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants Back     alignment and domain information
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query629
4dxt_A198 SUN domain-containing protein 2; beta-sandwich, LI 2e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
3f2z_A159 Uncharacterized protein BF3579; the present C-term 7e-07
3ggl_A169 Putative chitobiase; X-RAY, structure genomics, NE 9e-06
3hnm_A172 Putative chitobiase; PSI-2, protein structure init 2e-05
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-05
2yc2_A139 IFT25, intraflagellar transport protein 25; transp 5e-05
2jda_A145 Yecbm32; hypothetical protein, carbohydrate- bindi 7e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 6e-04
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 8e-04
>4dxt_A SUN domain-containing protein 2; beta-sandwich, LINC complex, structural protein; 2.22A {Homo sapiens} PDB: 3unp_A 4dxr_A* 4dxs_A* Length = 198 Back     alignment and structure
 Score = 82.8 bits (204), Expect = 2e-18
 Identities = 31/180 (17%), Positives = 62/180 (34%), Gaps = 31/180 (17%)

Query: 212 HRFDPDGTEY-NYASAMKGAKLVAHN-----KEAKGASNILGKDHNKYLRNP-------- 257
            R+  D     +YA    GA +++       +      ++ G     + ++P        
Sbjct: 18  QRYSEDRIGLADYALESGGASVISTRCSETYETKTALLSLFGIPLWYHSQSPRVILQPDV 77

Query: 258 -------CSVAGKFVVIELGEETLVDTV-------KIANFEHYSSNFKEFELSGSLSYPT 303
                        F V+ L        V        ++     SS  K+F + G      
Sbjct: 78  HPGNCWAFQGPQGFAVVRLSARIRPTAVTLEHVPKALSPNSTISSAPKDFAIFGFDEDLQ 137

Query: 304 EVWSPLGKFVA-TNVKQLQSFKLPEPKW--VRYLKLNLLSHYGSEFYCTLSVVEVYGVDA 360
           +  + LGKF    + + +Q+F    P     + ++L +L+++G   Y  +    V+G  A
Sbjct: 138 QEGTLLGKFTYDQDGEPIQTFHFQAPTMATYQVVELRILTNWGHPEYTCIYRFRVHGEPA 197
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3f2z_A Uncharacterized protein BF3579; the present C-terminal domain is predominantly composed of B strands., structural genomics, PSI-2; 1.30A {Bacteroides fragilis} PDB: 2kd7_A Length = 159 Back     alignment and structure
>3ggl_A Putative chitobiase; X-RAY, structure genomics, NESG, BTR324A, Q8A9F0_bactn, BT_0865, PSI-2, protein structure initiative; 3.00A {Bacteroides thetaiotaomicron} Length = 169 Back     alignment and structure
>3hnm_A Putative chitobiase; PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, BTR319D.BT_411; 3.00A {Bacteroides thetaiotaomicron} Length = 172 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2yc2_A IFT25, intraflagellar transport protein 25; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_A Length = 139 Back     alignment and structure
>2jda_A Yecbm32; hypothetical protein, carbohydrate- binding module, sugar-binding protein, pectin, plant cell WALL, galacturonic acid; 1.35A {Yersinia enterocolitica} PDB: 2jd9_A Length = 145 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query629
4dxt_A198 SUN domain-containing protein 2; beta-sandwich, LI 99.92
2yc2_A139 IFT25, intraflagellar transport protein 25; transp 99.41
1tvg_A153 LOC51668 protein; cell cycle, structural genomics, 99.06
3f2z_A159 Uncharacterized protein BF3579; the present C-term 98.82
2j1a_A150 Hyaluronidase, CBM32; protein-carbohydrate interac 98.77
3ggl_A169 Putative chitobiase; X-RAY, structure genomics, NE 98.67
2jda_A145 Yecbm32; hypothetical protein, carbohydrate- bindi 98.41
4a41_A161 GH89_CBM32-5, alpha-N-acetylglucosaminidase family 98.33
3hnm_A172 Putative chitobiase; PSI-2, protein structure init 98.19
1w8o_A601 Bacterial sialidase; 3D-structure, glycosidase, hy 98.01
4a42_A149 GH89_CBM32-4, alpha-N-acetylglucosaminidase family 98.01
4a3z_A161 GH89_CBM32, alpha-N-acetylglucosaminidase family p 97.91
2v72_A143 CBM32, EXO-alpha-sialidase; galactose, bacterial p 97.9
2v5d_A737 O-GLCNACASE NAGJ; family 32 carbohydrate binding m 97.65
1k12_A158 Lectin; beta barrel, protein carbohydrate complex, 97.63
2yfu_A155 Carbohydrate binding family 6; sugar binding prote 97.6
1jhj_A171 APC10; beta sandwich, jellyroll, cell cycle; 1.60A 97.54
3lei_A153 Platelet aggregation factor SM-HPAF; lectin domain 97.52
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 97.5
2j1v_A151 Fucolectin-related protein; carbohydrate-binding p 97.49
4gwi_A153 Lectinolysin, platelet aggregation factor SM-HPAF; 97.36
3cqo_A293 FBP32; F-lectin, fucolectin, sugar binding protein 97.28
3ues_A478 Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydr 97.2
3eyp_A469 Putative alpha-L-fucosidase; structural genomics, 97.19
4a4a_A 914 Alpha-N-acetylglucosaminidase family protein; hydr 97.09
3cqo_A293 FBP32; F-lectin, fucolectin, sugar binding protein 96.93
2j22_A148 Fucolectin-related protein; carbohydrate-binding p 96.82
1gqp_A221 DOC1/APC10; cell cycle, APC10/DOC1, APC/cyclosome, 96.8
3bn6_A158 Lactadherin; anticoagulation, anti-coagulation, an 96.18
1czt_A160 Protein (coagulation factor V); membrane-binding, 95.57
3hny_M159 Coagulation factor VIII; blood clotting, acute pha 95.17
1o59_A355 Allantoicase; YIR029W, structural genomics, JCSG, 95.09
2zxq_A1376 Endo-alpha-N-acetylgalactosaminidase; broken TIM b 95.04
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 94.14
4deq_A218 Neuropilin-1, vascular endothelial growth factor; 94.08
2vm9_A257 Discoidin-2, discoidin II; DDR, lectin, aggregatio 93.93
2qqi_A318 Neuropilin-1; VEGF receptor, semaphorin receptor, 93.84
2wuh_A178 Discoidin domain receptor 2; receptor-peptide comp 93.82
2w1s_A192 Hyaluronoglucosaminidase; hexosaminidase, family 3 92.98
2qqj_A325 Neuropilin-2; VEGF receptor, semaphorin receptor, 92.4
1o59_A355 Allantoicase; YIR029W, structural genomics, JCSG, 92.37
2qqi_A318 Neuropilin-1; VEGF receptor, semaphorin receptor, 91.62
1c1g_A 284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 89.87
2qqj_A325 Neuropilin-2; VEGF receptor, semaphorin receptor, 89.64
2qqm_A450 Neuropilin-1; VEGF receptor, semaphorin receptor, 89.38
1deq_A 390 Fibrinogen (alpha chain); coiled-coil, blood clott 89.14
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 89.05
2cho_A716 Glucosaminidase, hexosaminiase; O-GLCNACASE, hydro 88.84
3oja_A487 Leucine-rich immune molecule 1; coiled-coil, helix 88.76
3oja_A487 Leucine-rich immune molecule 1; coiled-coil, helix 88.46
2qqm_A450 Neuropilin-1; VEGF receptor, semaphorin receptor, 88.09
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 87.96
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 87.27
2wn3_A254 Discoidin-1 subunit A; type-H lectin, cell adhesio 86.91
2v66_B111 Nuclear distribution protein NUDE-like 1; structur 86.64
2qqo_A460 Neuropilin-2; VEGF receptor, semaphorin receptor, 85.52
1m1j_B 464 Fibrinogen beta chain; coiled coils, disulfide rin 84.94
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 84.91
2iub_A363 CORA, divalent cation transport-related protein; m 84.56
4ev6_A339 Magnesium transport protein CORA; membrane protein 84.16
1sdd_B647 Coagulation factor V; copper-binding protein, cofa 83.64
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 83.33
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 81.56
1sdd_B647 Coagulation factor V; copper-binding protein, cofa 80.64
2qqo_A460 Neuropilin-2; VEGF receptor, semaphorin receptor, 80.37
1m1j_A 491 Fibrinogen alpha subunit; coiled coils, disulfide 80.2
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 80.01
>4dxt_A SUN domain-containing protein 2; beta-sandwich, LINC complex, structural protein; 2.22A {Homo sapiens} PDB: 3unp_A 4dxr_A* 4dxs_A* 4fi9_A Back     alignment and structure
Probab=99.92  E-value=5.6e-25  Score=213.07  Aligned_cols=137  Identities=23%  Similarity=0.348  Sum_probs=118.3

Q ss_pred             CcccccccccCceEeecc--c------------------cccccCcccccCcccccccccCC---CCcEEEEEecceeee
Q 006838          219 TEYNYASAMKGAKLVAHN--K------------------EAKGASNILGKDHNKYLRNPCSV---AGKFVVIELGEETLV  275 (629)
Q Consensus       219 ~~~NYAS~d~GAkIl~sn--~------------------eakgasnIL~~nkD~YMLnPCsa---~~kfVVIELcEeI~V  275 (629)
                      .+.|||+.+.||+|+.+.  +                  ...+|..+|.++.   ..+-||+   ..++++|+|++.|.|
T Consensus        26 g~~DyAl~s~Ga~Ii~~~tS~ty~~~~~~~s~~g~~~~~~~~~P~~~L~p~~---~pG~CW~f~g~~g~l~I~Ls~~I~~  102 (198)
T 4dxt_A           26 GLADYALESGGASVISTRCSETYETKTALLSLFGIPLWYHSQSPRVILQPDV---HPGNCWAFQGPQGFAVVRLSARIRP  102 (198)
T ss_dssp             CCCCTTCGGGTCEEEEEEECCBCCTTHHHHTTTCCCSSCCCCCGGGGGSSCC---STTCSEEEETTCEEEEEEEEEEEEE
T ss_pred             CCcCeEcccCCcEEcCcccCCCccCCCceeeecCccccccCCCchheEcCCC---CCcceeecCCCcceeeeecCCeEEE
Confidence            368999999999999732  1                  1245666776665   5677887   678999999999999


Q ss_pred             cEEEEeecc-------cccCCCCeEEEEeeccCCCCCceeeEEEEeecc-ccceeeeCCCC--ceEEEEEEEEeeccCC-
Q 006838          276 DTVKIANFE-------HYSSNFKEFELSGSLSYPTEVWSPLGKFVATNV-KQLQSFKLPEP--KWVRYLKLNLLSHYGS-  344 (629)
Q Consensus       276 ~~I~IANfE-------~fSS~pKdF~VsgS~~YPt~~W~~LG~F~a~N~-R~~Q~F~L~~~--~w~RYLKle~LSHyGs-  344 (629)
                      +.|+|.|..       ..+|+||+|+|+|...++.++|.+||+|++++. +..|+|.|+++  .++++|+|+|+||||+ 
T Consensus       103 ~~VtieHi~~~~sp~~~~~SAPKdf~V~g~~~~~~~~~~~Lg~f~Y~~~~~~~QtF~l~~~~~~~~~~V~l~i~SN~G~~  182 (198)
T 4dxt_A          103 TAVTLEHVPKALSPNSTISSAPKDFAIFGFDEDLQQEGTLLGKFTYDQDGEPIQTFHFQAPTMATYQVVELRILTNWGHP  182 (198)
T ss_dssp             EEEEEECCCGGGSGGGCCTTSBCEEEEEEESSSSCCCCEEEEEEECCTTSCSEEEEECSSCCSCCEEEEEEEECCBSSCS
T ss_pred             EEEEEEcCchhcccccCcCCCCcEEEEEEEcCCCCCCcEEEEEEEECCCCCcceEEEeCCCCCcceeEEEEEEECCCCCC
Confidence            999999974       679999999999999888889999999999986 46799999876  4899999999999999 


Q ss_pred             cceeeeeEEEEeccc
Q 006838          345 EFYCTLSVVEVYGVD  359 (629)
Q Consensus       345 E~YC~LS~vrVyG~t  359 (629)
                      +|+| ||+|||||..
T Consensus       183 ~~TC-lYr~RVhG~~  196 (198)
T 4dxt_A          183 EYTC-IYRFRVHGEP  196 (198)
T ss_dssp             SEEE-ECEEEEEEEC
T ss_pred             CcEE-EEEEEEcCEe
Confidence            8999 8999999985
>2yc2_A IFT25, intraflagellar transport protein 25; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_A Back     alignment and structure
>1tvg_A LOC51668 protein; cell cycle, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Homo sapiens} SCOP: b.18.1.9 PDB: 1xpw_A Back     alignment and structure
>3f2z_A Uncharacterized protein BF3579; the present C-terminal domain is predominantly composed of B strands., structural genomics, PSI-2; 1.30A {Bacteroides fragilis} PDB: 2kd7_A Back     alignment and structure
>2j1a_A Hyaluronidase, CBM32; protein-carbohydrate interaction, glycoside hydrolase, GH84C, hydrolase; HET: GAL; 1.49A {Clostridium perfringens} PDB: 2j1e_A* 2j7m_A* Back     alignment and structure
>3ggl_A Putative chitobiase; X-RAY, structure genomics, NESG, BTR324A, Q8A9F0_bactn, BT_0865, PSI-2, protein structure initiative; 3.00A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2jda_A Yecbm32; hypothetical protein, carbohydrate- binding module, sugar-binding protein, pectin, plant cell WALL, galacturonic acid; 1.35A {Yersinia enterocolitica} PDB: 2jd9_A Back     alignment and structure
>4a41_A GH89_CBM32-5, alpha-N-acetylglucosaminidase family protein; hydrolase, family 89 glycoside hydrolase, family 32 carbohyd binding module; HET: GAL; 1.55A {Clostridium perfringens} PDB: 4a44_A* 4a45_A* 4aax_A* Back     alignment and structure
>3hnm_A Putative chitobiase; PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, BTR319D.BT_411; 3.00A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A* Back     alignment and structure
>4a42_A GH89_CBM32-4, alpha-N-acetylglucosaminidase family protein; hydrolase, family 89 glycoside hydrolase, family 32 carbohyd binding module; HET: MSE; 1.55A {Clostridium perfringens} Back     alignment and structure
>4a3z_A GH89_CBM32, alpha-N-acetylglucosaminidase family protein; hydrolase, family 32 carbohydrate-binding module; HET: MSE; 1.55A {Clostridium perfringens} PDB: 4a6o_A* Back     alignment and structure
>2v72_A CBM32, EXO-alpha-sialidase; galactose, bacterial pathogen, carbohydrate-binding module, sugar-binding protein; HET: GAL; 2.25A {Clostridium perfringens} Back     alignment and structure
>2v5d_A O-GLCNACASE NAGJ; family 32 carbohydrate binding module, glycosidase, GH84, GH84C, CBM32, hydrolase, coiled coil; 3.30A {Clostridium perfringens} Back     alignment and structure
>1k12_A Lectin; beta barrel, protein carbohydrate complex, sugar binding protein; HET: FUC; 1.90A {Anguilla anguilla} SCOP: b.18.1.15 Back     alignment and structure
>2yfu_A Carbohydrate binding family 6; sugar binding protein; 1.65A {Clostridium thermocellum} PDB: 2y8j_A* 2y9i_A* 2y9s_A 2yb7_A* 2y8m_A 2yfz_A* 2yg0_A* Back     alignment and structure
>1jhj_A APC10; beta sandwich, jellyroll, cell cycle; 1.60A {Homo sapiens} SCOP: b.18.1.9 Back     alignment and structure
>3lei_A Platelet aggregation factor SM-HPAF; lectin domain of lectinolysin, fucose, blood clotting, nicke; HET: FUC; 1.90A {Streptococcus mitis} PDB: 3leg_A* 3le0_A* 3lek_A* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2j1v_A Fucolectin-related protein; carbohydrate-binding protein, carbohydrate binding protein; HET: NAG GAL FUC; 1.45A {Streptococcus pneumoniae} PDB: 2j1r_A* 2j1t_A* 2j1u_A* 2j1s_A* Back     alignment and structure
>4gwi_A Lectinolysin, platelet aggregation factor SM-HPAF; cholesterol-dependent cytolysins, lewis antigens, F-type LEC glycan binding; HET: BDZ; 1.60A {Streptococcus mitis} PDB: 4gwj_A* 3lei_A* 3leg_A* 3le0_A* 3lek_A* Back     alignment and structure
>3cqo_A FBP32; F-lectin, fucolectin, sugar binding protein; HET: FUC; 2.32A {Morone saxatilis} Back     alignment and structure
>3ues_A Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydrolase inhibitor complex; HET: DFU; 1.60A {Bifidobacterium longum subsp} PDB: 3mo4_A* 3uet_A* Back     alignment and structure
>3eyp_A Putative alpha-L-fucosidase; structural genomics, hydrolase, lipoprotein, PSI-2, protein initiative; 1.90A {Bacteroides thetaiotaomicron} Back     alignment and structure
>4a4a_A Alpha-N-acetylglucosaminidase family protein; hydrolase, 2 hydrolase, family 89 glycoside hydrolase, mucin carbohydrate-active enzyme; HET: NDG GAL; 1.90A {Clostridium perfringens} PDB: 2vcc_A 2vc9_A* 2vcb_A* 2vca_A Back     alignment and structure
>3cqo_A FBP32; F-lectin, fucolectin, sugar binding protein; HET: FUC; 2.32A {Morone saxatilis} Back     alignment and structure
>2j22_A Fucolectin-related protein; carbohydrate-binding protein, carbohydrate binding protein; 1.8A {Streptococcus pneumoniae} Back     alignment and structure
>1gqp_A DOC1/APC10; cell cycle, APC10/DOC1, APC/cyclosome, ubiquitination, E3 ubiquitin ligase, beta sandwich, jelly roll; 2.2A {Saccharomyces cerevisiae} SCOP: b.18.1.9 Back     alignment and structure
>3bn6_A Lactadherin; anticoagulation, anti-coagulation, anticoagulant, anti- coagulant, membrane binding, phosphatidyl-serine binding; 1.67A {Bos taurus} PDB: 2pqs_A Back     alignment and structure
>1czt_A Protein (coagulation factor V); membrane-binding, discoidin family, calcium- independent, blood clotting; 1.87A {Homo sapiens} SCOP: b.18.1.2 PDB: 1czs_A 1czv_A Back     alignment and structure
>3hny_M Coagulation factor VIII; blood clotting, acute phase, blood coagulation, calcium, DIS mutation, disulfide bond, glycoprotein, hemophilia; 1.07A {Homo sapiens} SCOP: b.18.1.2 PDB: 3hnb_M 3hob_M 1d7p_M 1iqd_C 1cfg_A 1fac_A Back     alignment and structure
>1o59_A Allantoicase; YIR029W, structural genomics, JCSG, PSI, prote structure initiative, joint center for structural genomics, hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: b.18.1.22 b.18.1.22 PDB: 1sg3_A Back     alignment and structure
>2zxq_A Endo-alpha-N-acetylgalactosaminidase; broken TIM barrel, glycosidase, hydrolase; 2.00A {Bifidobacterium longum} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>4deq_A Neuropilin-1, vascular endothelial growth factor; coagulation factor domain, heparin binding domain, angiogene protein binding-cytokine complex; 2.65A {Homo sapiens} PDB: 1kmx_A 1vgh_A 2vgh_A Back     alignment and structure
>2vm9_A Discoidin-2, discoidin II; DDR, lectin, aggregation, cell adhesion; 1.75A {Dictyostelium discoideum} PDB: 2vmc_A* 2vmd_A* 2vme_A* Back     alignment and structure
>2qqi_A Neuropilin-1; VEGF receptor, semaphorin receptor, angiogenesis, developmen protein, differentiation, glycoprotein, heparan sulfate, ME neurogenesis; 1.80A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 PDB: 2orz_A 2orx_A 2qqn_A 3i97_A* 1kex_A Back     alignment and structure
>2wuh_A Discoidin domain receptor 2; receptor-peptide complex, transferase, nucleotide-binding, tyrosine-protein kinase; 1.60A {Homo sapiens} PDB: 2z4f_A Back     alignment and structure
>2w1s_A Hyaluronoglucosaminidase; hexosaminidase, family 32 carbohydrate binding module, toxin, secreted, virulence, hydrolase, glycosidase; HET: MSE BTB; 1.45A {Clostridium perfringens} PDB: 2w1q_A* 2w1u_A* 2wdb_A* Back     alignment and structure
>2qqj_A Neuropilin-2; VEGF receptor, semaphorin receptor, developmental protein, differentiation, glycoprotein, membrane, neurogenesis, transmembrane; 1.95A {Homo sapiens} Back     alignment and structure
>1o59_A Allantoicase; YIR029W, structural genomics, JCSG, PSI, prote structure initiative, joint center for structural genomics, hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: b.18.1.22 b.18.1.22 PDB: 1sg3_A Back     alignment and structure
>2qqi_A Neuropilin-1; VEGF receptor, semaphorin receptor, angiogenesis, developmen protein, differentiation, glycoprotein, heparan sulfate, ME neurogenesis; 1.80A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 PDB: 2orz_A 2orx_A 2qqn_A 3i97_A* 1kex_A Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>2qqj_A Neuropilin-2; VEGF receptor, semaphorin receptor, developmental protein, differentiation, glycoprotein, membrane, neurogenesis, transmembrane; 1.95A {Homo sapiens} Back     alignment and structure
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1 Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>2cho_A Glucosaminidase, hexosaminiase; O-GLCNACASE, hydrolase, N-acetylglucosamine; 1.85A {Bacteroides thetaiotaomicron} SCOP: a.246.1.1 c.1.8.10 d.92.2.3 PDB: 2chn_A 2vvn_A* 2vvs_A* 2x0h_A* 2xm2_A* 2w4x_A* 2w66_A* 2w67_A* 2wca_A* 2xj7_A* 2xm1_A* 2j47_A* 2jiw_A* 2wzh_A* 2wzi_A* 2j4g_A* Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1 Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2wn3_A Discoidin-1 subunit A; type-H lectin, cell adhesion, discoidin domain, lectin; HET: NGA GAL 1PG; 1.59A {Dictyostelium discoideum} PDB: 2w94_A* 2wn2_A* 2w95_A* Back     alignment and structure
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens} Back     alignment and structure
>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens} Back     alignment and structure
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B* Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A Back     alignment and structure
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii} Back     alignment and structure
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2 Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2 Back     alignment and structure
>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens} Back     alignment and structure
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 629
d1k3ia2162 b.18.1.1 (A:-12-150) Galactose oxidase, N-terminal 2e-05
d1w8oa2142 b.18.1.1 (A:506-647) Sialidase, C-terminal domain 6e-04
>d1k3ia2 b.18.1.1 (A:-12-150) Galactose oxidase, N-terminal domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 162 Back     information, alignment and structure

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Galactose-binding domain
domain: Galactose oxidase, N-terminal domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score = 43.0 bits (100), Expect = 2e-05
 Identities = 11/96 (11%), Positives = 33/96 (34%)

Query: 265 VVIELGEETLVDTVKIANFEHYSSNFKEFELSGSLSYPTEVWSPLGKFVATNVKQLQSFK 324
             I++     V+ + +   +  + N         LS     W       +        + 
Sbjct: 67  YTIDMKTTQNVNGLSMLPRQDGNQNGWIGRHEVYLSSDGTNWGSPVASGSWFADSTTKYS 126

Query: 325 LPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYGVDA 360
             E +  RY++L  ++    + + +++ + V+   +
Sbjct: 127 NFETRPARYVRLVAITEANGQPWTSIAEINVFQASS 162
>d1w8oa2 b.18.1.1 (A:506-647) Sialidase, C-terminal domain {Micromonospora viridifaciens [TaxId: 1881]} Length = 142 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query629
d1tvga_136 Placental protein 25, pp25 {Human (Homo sapiens) [ 99.34
d1w8oa2142 Sialidase, C-terminal domain {Micromonospora virid 98.82
d1k3ia2162 Galactose oxidase, N-terminal domain {Fungi (Fusar 98.44
d1gqpa_194 APC10/DOC1 subunit of the anaphase-promoting compl 98.42
d1jhja_161 APC10/DOC1 subunit of the anaphase-promoting compl 98.39
d1k12a_158 Fucose binding lectin {European eel (Anguilla angu 97.29
d1o59a2150 Allantoicase {Baker's yeast (Saccharomyces cerevis 96.4
d1o59a1188 Allantoicase {Baker's yeast (Saccharomyces cerevis 95.66
d1d7pm_159 C2 domain of factor VIII {Human (Homo sapiens) [Ta 95.35
d2qqia2155 B1 domain of neuropilin-1 {Human (Homo sapiens) [T 94.93
d1czsa_160 C2 domain of factor V {Human (Homo sapiens) [TaxId 94.49
d1sddb3162 C2 domain of factor V {Cow (Bos taurus) [TaxId: 99 94.44
d2qqia1156 C2 domain of factor VIII {Human (Homo sapiens) [Ta 94.37
>d1tvga_ b.18.1.9 (A:) Placental protein 25, pp25 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: APC10-like
domain: Placental protein 25, pp25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1e-11  Score=108.62  Aligned_cols=131  Identities=11%  Similarity=0.173  Sum_probs=102.1

Q ss_pred             ccccccccCceEeecccccc--ccCcccccCcccccccccCCCCcEEEEEecceeeecEEEEeecccccCCCCeEEEEee
Q 006838          221 YNYASAMKGAKLVAHNKEAK--GASNILGKDHNKYLRNPCSVAGKFVVIELGEETLVDTVKIANFEHYSSNFKEFELSGS  298 (629)
Q Consensus       221 ~NYAS~d~GAkIl~sn~eak--gasnIL~~nkD~YMLnPCsa~~kfVVIELcEeI~V~~I~IANfE~fSS~pKdF~VsgS  298 (629)
                      .|||....||+|++++....  +|++++.+|.+.|-......+ +|++|+|.+...|++|.|.+.   ......|+|++|
T Consensus         1 ~d~~l~~~G~~v~~~ss~~~~~~~~~~iDgd~~T~W~s~~~~p-~~i~idl~~~~~i~~i~i~~~---~~~~~~~~i~~s   76 (136)
T d1tvga_           1 IDLCLSSEGSEVILATSSDEKHPPENIIDGNPETFWTTTGMFP-QEFIICFHKHVRIERLVIQSY---FVQTLKIEKSTS   76 (136)
T ss_dssp             CBTTCGGGTCEEECCSCCCTTSCGGGGGSSCTTCCEECCSCSS-EEEEEEEEEEEEEEEEEEEEE---SEEEEEEEEECS
T ss_pred             CceeeccCCcEEEEEecCCCCCCHHheEcCCCCceeecCCCCc-EEEEEECCCeEEEeeEEEEec---ccceeEEEEEEc
Confidence            48999999999998776444  489999999999998776544 699999999999999999985   222234444454


Q ss_pred             ccCCCCCceeeEEEEeecccc-ceeeeCCCCceEEEEEEEEeeccCCcceeeeeEEEEeccc
Q 006838          299 LSYPTEVWSPLGKFVATNVKQ-LQSFKLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYGVD  359 (629)
Q Consensus       299 ~~YPt~~W~~LG~F~a~N~R~-~Q~F~L~~~~w~RYLKle~LSHyGsE~YC~LS~vrVyG~t  359 (629)
                      .  +...|+.++..+..+... .|.-.+..+.-+|||||.+++.||.  |+.|+-|+|||..
T Consensus        77 ~--Dg~~w~~v~~~~~~~~~~~~~~~~~~~~~~aryvR~~i~s~~g~--~~~i~ev~v~G~~  134 (136)
T d1tvga_          77 K--EPVDFEQWIEKDLVHTEGQLQNEEIVAHGSATYLRFIIVSAFDH--FASVHSVSAEGTV  134 (136)
T ss_dssp             S--SSCCCEEEEEEECCCCTTCCEEEEECCCEEEEEEEEEEEEESSS--CCEEEEEEEEEEE
T ss_pred             c--CCceeEEEEEecccCCCCcceEEecCCccEEEEEEEEEEeccCC--cEEEEEEEEEeEE
Confidence            4  567899999988755332 3443455677899999999999984  6679999999984
>d1w8oa2 b.18.1.1 (A:506-647) Sialidase, C-terminal domain {Micromonospora viridifaciens [TaxId: 1881]} Back     information, alignment and structure
>d1gqpa_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting complex {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jhja_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting complex {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k12a_ b.18.1.15 (A:) Fucose binding lectin {European eel (Anguilla anguilla) [TaxId: 7936]} Back     information, alignment and structure
>d1o59a2 b.18.1.22 (A:194-343) Allantoicase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1o59a1 b.18.1.22 (A:0-187) Allantoicase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1d7pm_ b.18.1.2 (M:) C2 domain of factor VIII {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qqia2 b.18.1.2 (A:273-427) B1 domain of neuropilin-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1czsa_ b.18.1.2 (A:) C2 domain of factor V {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sddb3 b.18.1.2 (B:1863-2024) C2 domain of factor V {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2qqia1 b.18.1.2 (A:431-586) C2 domain of factor VIII {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure