Citrus Sinensis ID: 006910

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620------
MYIYINHLLFINYFIIIILLKREREIMSNTKRIVVVERAISSLGKGFDLTSDFRLKYCKGKERLVVLNDADHEREITVPGFGSVNEVSIDIKCDKGDRTRYQSDILNFNQMSEFFNQNSAIPGKIPSGLFNNMFNFHSGSWAKDAGNTKYLGLDGYYIILFNVHIDRYPLVLSDEVRNAVPSSWDPFALARFIEKYGTHIIVGLSIGGQDVVLVNQDNSSNLGPSELKKHLDDLGDQLFTGTCNFTPNIKEQKNKPPQAFKVFDPTPAAVNSFSSTSSKDGISVICSRRGGDPSAYSHCEWLLTVPSNPDAVHFNFIPITSLLKGVPGKGFLSHAINLYLRYKPPITDLQYFLEFQAHKVWAPIHNDLPLGPTTNMTNPSPALHFHLMGPKLYVNTMQVTTEKIPVTGVRLYLEGRKCNRLAVHLQHLSITPTMLDSKIDTDTQLWRGSDVTDDNHQYFEAIGGKYFSHICTAPVKYDPKWATRKDVSFIVTGAQLHVQKHESKSILHLRLLFSKVSHAFIVQSSWAQSSSEFSQKSGFFSAISAPNSGNQEKEKKPVVIVDSSVFPTGPPVPVRTQKLLKFVDTSQLCRGPQDSPGHWLVTGAKLDLEKGKICLRVKFSLLNICS
cEEEEEHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccEEEccccccccEEEEEccccEEEEEEcccEEEccccccEEEcccccEEEEccccccHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEEEEccccccHHHHHHHccccccHHHHHHHHHHcccEEEEEEEEccEEEEEEEEcccccccHHHHHHHHHHHHccEEEccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccHHHHHccccccccEEEEEccHHHHHHcccccccHHHHHHHHHHHHccccccccccccccccEEEcccccccccccccccccccccEEEEEcccEEEEEccccccccccEEEEEEEEccccccccHHHHHHccccccccccccccccccccccccccccccEEEEcccccccEEEEccEEcccccccccccEEEEEccEEEEEEccccEEEEEEEEcccccccEEEEccccccccccccccccEEEccccccccccccccccEEccccccccccccccccccccccccccccccccccccccEEEEEEEEEEcccEEEEEEEEEcccccc
cEEEHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccEEHHHccccccEEEEEccccccEEEEcccEEEccccccEEccccccEEEccccccHHHHHHHHHHHcccccccccccHHHHcccccccHHHHHHHHHHHccccEEEEEEEEEEcccccEccHHHHHHccccccHHHHHHHHHHcccEEEEEEEEcccEEEEEEEcccccccHHHHHHHHHHHHHHHHccccccccccccccccccccEEccccccccccccccccccccEEEEEEEccccccccHHHHHHHHccccccEEEEEEEEHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHccccccccccccccccccccccccccccEEEEccccEEEEEcccEEcccccEEEEEEEEEcccccEHHEEHHHHHcccHHHcccccccccccccccccccccccEEEEccccEcEEEEccEccccccccccccEEEEEccEEEEccccccEEEEEEEEEccccccEEEEccccccccccccccccEEEccccccccccccccccEEEcccEcccccccccccccHEEEEcccHccccccccccEEEEEccEEEccccEEEEEEEEEEHcccc
MYIYINHLLFINYFIIIILLKREREIMSNTKRIVVVERAISslgkgfdltsdfrlkyckgkerlvvlndadhereitvpgfgsvnevsidikcdkgdrtryqSDILNFNQMSeffnqnsaipgkipsglfnnmfnfhsgswakdagntkylgldGYYIILFNVHidryplvlsdevrnavpsswdpFALARFIEKYGTHIIVGLSiggqdvvlvnqdnssnlgpsELKKHLDDLGDqlftgtcnftpnikeqknkppqafkvfdptpaavnsfsstsskdgISVIcsrrggdpsayshcewlltvpsnpdavhfnfipitsllkgvpgkgflsHAINLYlrykppitdlQYFLEFQahkvwapihndlplgpttnmtnpspalhfhlmgpklyVNTMQVTTEKIPVTGVRLYLEGRKCNRLAVHLQHlsitptmldskidtdtqlwrgsdvtddnhQYFEAIGgkyfshictapvkydpkwatrkdvsFIVTGAQLHVQKHESKSILHLRLLFSKVSHAFIVqsswaqsssefsqksgffsaisapnsgnqekekkpvvivdssvfptgppvpvrtqkllkfvdtsqlcrgpqdspghwlvtgakldlekgkicLRVKFSLLNICS
myiyinhlLFINYFIIIILLKREREIMSNTKRIVVVERaisslgkgfdltsdfRLKYCKGKERLVvlndadhereitvpgfgsvnevsidikcdkgdRTRYQSDILNFNQMSEFFNQNSAIPGKIPSGLFNNMFNFHSGSWAKDAGNTKYLGLDGYYIILFNVHIDRYPLVLSDEVRNAVPSSWDPFALARFIEKYGTHIIVGLSIGGQDVVLVNQDNSSNLGPSELKKHLDDLGDQLFTGTCNFTPNIKEQKNKPPQAFKVFDPTPAAVNsfsstsskdgiSVICSRRGGDPSAYSHCEWLLTVPSNPDAVHFNFIPITSLLKGVPGKGFLSHAINLYLRYKPPITDLQYFLEFQAHKVWAPIHNDLPLGPTTNMTNPSPALHFHLMGPKLYVNTMQVTTEKIPVTGVRLYLEGRKCNRLAVHLQhlsitptmldsKIDTDTQLWRGSDVTDDNHQYFEAIGGKYFSHICTAPVKYDPKWATRKDVSFIVTGAQLHVQKHESKSILHLRLLFSKVSHAFIVQSSWAQSSSEFSQKSGFFSAISapnsgnqekekKPVVIVDSsvfptgppvpvrTQKLLKFVDTSQlcrgpqdspghWLVTGakldlekgkiclrvkfsllnics
MYIYinhllfinyfiiiillkrereiMSNTKRIVVVERAISSLGKGFDLTSDFRLKYCKGKERLVVLNDADHEREITVPGFGSVNEVSIDIKCDKGDRTRYQSDILNFNQMSEFFNQNSAIPGKIPSGLFNNMFNFHSGSWAKDAGNTKYLGLDGYYIILFNVHIDRYPLVLSDEVRNAVPSSWDPFALARFIEKYGTHIIVGLSIGGQDVVLVNQDNSSNLGPSELKKHLDDLGDQLFTGTCNFTPNIKEQKNKPPQAFKVFDPTPAAVNSFSSTSSKDGISVICSRRGGDPSAYSHCEWLLTVPSNPDAVHFNFIPITSLLKGVPGKGFLSHAINLYLRYKPPITDLQYFLEFQAHKVWAPIHNDLPLGPTTNMTNPSPALHFHLMGPKLYVNTMQVTTEKIPVTGVRLYLEGRKCNRLAVHLQHLSITPTMLDSKIDTDTQLWRGSDVTDDNHQYFEAIGGKYFSHICTAPVKYDPKWATRKDVSFIVTGAQLHVQKHESKSILHLRLLFSKVSHAFIVqsswaqsssefsqksgffsAISAPNSGNQEKEKKPVVIVDSSVFPTGPPVPVRTQKLLKFVDTSQLCRGPQDSPGHWLVTGAKLDLEKGKICLRVKFSLLNICS
*YIYINHLLFINYFIIIILLKREREIMSNTKRIVVVERAISSLGKGFDLTSDFRLKYCKGKERLVVLNDADHEREITVPGFGSVNEVSIDIKCDKGDRTRYQSDILNFNQMSEFFNQNSAIPGKIPSGLFNNMFNFHSGSWAKDAGNTKYLGLDGYYIILFNVHIDRYPLVLSDEVRNAVPSSWDPFALARFIEKYGTHIIVGLSIGGQDVVLVN*****************DLGDQLFTGTCNFT*************************************VIC******PSAYSHCEWLLTVPSNPDAVHFNFIPITSLLKGVPGKGFLSHAINLYLRYKPPITDLQYFLEFQAHKVWAPIHNDLPLGPTTNMTNPSPALHFHLMGPKLYVNTMQVTTEKIPVTGVRLYLEGRKCNRLAVHLQHLSITPTMLDSKIDTDTQLWRGSDVTDDNHQYFEAIGGKYFSHICTAPVKYDPKWATRKDVSFIVTGAQLHVQKHESKSILHLRLLFSKVSHAFIVQSSW********************************VIVDSSVFPTGPPVPVRTQKLLKFVDTSQLCRGPQDSPGHWLVTGAKLDLEKGKICLRVKFSLLNIC*
MYIYINHLLFINYFIIIILL*****************RAISSLGKGFDLTSDFRLKYCKGKERLVVLNDADHEREITVPGFGSVNEVSIDIKCDKGDRTRYQSDILNFNQMSE*************SGLFNNMFNFHSGSWAKDAGNTKYLGLDGYYIILFNVHIDRYPLVLSDEVRNAVPSSWDPFALARFIEKYGTHIIVGLSIGGQDVVLV****************LDDLGDQLF**********************************************************H*EWLLTVPSNPDAVHFNFIPITSLLKGVPGKGFLSHAINLYLRYKPPITDLQYFLEFQAHKVWAPIHNDLPLG********SPALHFHLMGPKLYVNTMQVTTEKIPVTGVRLYLEGRKCNRLAVHLQHLSITPTMLDSKIDTD**********DDNHQYFEAIGGKYFSHICTAPVKYDPKWATRKDVSFIVTGAQLHVQKHESKSILHLRLLFSKVSHAFIVQ******************************************FPTGPPVPVRTQKLLKFVDTSQLCRGPQDSPGHWLVTGAKLDLEKGKICLRVKFSLLNICS
MYIYINHLLFINYFIIIILLKREREIMSNTKRIVVVERAISSLGKGFDLTSDFRLKYCKGKERLVVLNDADHEREITVPGFGSVNEVSIDIKCDKGDRTRYQSDILNFNQMSEFFNQNSAIPGKIPSGLFNNMFNFHSGSWAKDAGNTKYLGLDGYYIILFNVHIDRYPLVLSDEVRNAVPSSWDPFALARFIEKYGTHIIVGLSIGGQDVVLVNQDNSSNLGPSELKKHLDDLGDQLFTGTCNFTPNIKEQKNKPPQAFKVFDPTPAAVNSFSSTSSKDGISVICSRRGGDPSAYSHCEWLLTVPSNPDAVHFNFIPITSLLKGVPGKGFLSHAINLYLRYKPPITDLQYFLEFQAHKVWAPIHNDLPLGPTTNMTNPSPALHFHLMGPKLYVNTMQVTTEKIPVTGVRLYLEGRKCNRLAVHLQHLSITPTMLDSKIDTDTQLWRGSDVTDDNHQYFEAIGGKYFSHICTAPVKYDPKWATRKDVSFIVTGAQLHVQKHESKSILHLRLLFSKVSHAFIVQS***********KSGFFSAISAP*********KPVVIVDSSVFPTGPPVPVRTQKLLKFVDTSQLCRGPQDSPGHWLVTGAKLDLEKGKICLRVKFSLLNICS
MYIYINHLLFINYFIIIILLKREREIMSNTKRIVVVERAISSLGKGFDLTSDFRLKYCKGKERLVVLNDADHEREITVPGFGSVNEVSIDIKCDKGDRTRYQSDILNFNQMSEFFNQNSAIPGKIPSGLFNNMFNFHSGSWAKDAGNTKYLGLDGYYIILFNVHIDRYPLVLSDEVRNAVPSSWDPFALARFIEKYGTHIIVGLSIGGQDVVLVNQDNSSNLGPSELKKHLDDLGDQLFTGT************************PAAVNSFSSTSSKDGISVICSRRGGDPSAYSHCEWLLTVPSNPDAVHFNFIPITSLLKGVPGKGFLSHAINLYLRYKPPITDLQYFLEFQAHKVWAPIHNDLPLGPTTNMTNPSPALHFHLMGPKLYVNTMQVTTEKIPVTGVRLYLEGRKCNRLAVHLQHLSITPTMLDSKIDTDT*LWR***V*DDNHQYFEAIGGKYFSHICTAPVKYDPKWATRKDVSFIVTGAQLHVQKHESKSILHLRLLFSKVSHAFIVQSSWAQSSS*************APNSGNQEKEKKPVVIVDSSVFPTGPPVPVRTQKLLKFVDTSQLCRGPQDSPGHWLVTGAKLDLEKGKICLRVKFSLLN***
iHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MYIYINHLLFINYFIIIILLKREREIMSNTKRIVVVERAISSLGKGFDLTSDFRLKYCKGKERLVVLNDADHEREITVPGFGSVNEVSIDIKCDKGDRTRYQSDILNFNQMSEFFNQNSAIPGKIPSGLFNNMFNFHSGSWAKDAGNTKYLGLDGYYIILFNVHIDRYPLVLSDEVRNAVPSSWDPFALARFIEKYGTHIIVGLSIGGQDVVLVNQDNSSNLGPSELKKHLDDLGDQLFTGTCNFTPNIKEQKNKPPQAFKVFDPTPAAVNSFSSTSSKDGISVICSRRGGDPSAYSHCEWLLTVPSNPDAVHFNFIPITSLLKGVPGKGFLSHAINLYLRYKPPITDLQYFLEFQAHKVWAPIHNDLPLGPTTNMTNPSPALHFHLMGPKLYVNTMQVTTEKIPVTGVRLYLEGRKCNRLAVHLQHLSITPTMLDSKIDTDTQLWRGSDVTDDNHQYFEAIGGKYFSHICTAPVKYDPKWATRKDVSFIVTGAQLHVQKHESKSILHLRLLFSKVSHAFIVQSSWAQSSSEFSQKSGFFSAISAPNSGNQEKEKKPVVIVDSSVFPTGPPVPVRTQKLLKFVDTSQLCRGPQDSPGHWLVTGAKLDLEKGKICLRVKFSLLNICS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query626 2.2.26 [Sep-21-2011]
Q8L612627 MACPF domain-containing p yes no 0.934 0.933 0.597 0.0
Q9STW5606 MACPF domain-containing p no no 0.908 0.938 0.475 1e-149
Q9SGN6612 MACPF domain-containing p no no 0.900 0.921 0.450 1e-134
Q9C7N2561 MACPF domain-containing p no no 0.853 0.951 0.413 1e-116
>sp|Q8L612|MACP1_ARATH MACPF domain-containing protein At1g14780 OS=Arabidopsis thaliana GN=At1g14780 PE=2 SV=1 Back     alignment and function desciption
 Score =  723 bits (1867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/616 (59%), Positives = 448/616 (72%), Gaps = 31/616 (5%)

Query: 35  VVERAISSLGKGFDLTSDFRLKYCK------GKERLVVLNDADHEREITVPGFGSVNEVS 88
           V+E A+ SLGKGFDLT+DFRLKYCK      G +RLVVL D    RE+ +PGFG    VS
Sbjct: 8   VIETAVKSLGKGFDLTADFRLKYCKDGDGSAGDDRLVVL-DQTQNRELHIPGFGVFQNVS 66

Query: 89  IDIKCDKGDRTRYQSDILNFNQMSEFFNQNSAIPGKIPSGLFNNMFNFHSGSWAKDAGNT 148
            DI CDKG+RTR++SDIL+FN+MSE+FNQ S++ GKIPSG FN  F F SGSWA DA N 
Sbjct: 67  ADINCDKGERTRFRSDILDFNKMSEYFNQRSSVTGKIPSGNFNATFGFQSGSWATDAANV 126

Query: 149 KYLGLDGYYIILFNVHI-DRYPLVLSDEVRNAVPSSWDPFALARFIEKYGTHIIVGLSIG 207
           K LGLD   + LFN+HI +   L L+D VRNAVPSSWDP  LARFIE+YGTH+I G+S+G
Sbjct: 127 KSLGLDASVVTLFNLHIHNPNRLRLTDRVRNAVPSSWDPQLLARFIERYGTHVITGVSVG 186

Query: 208 GQDVVLVNQDNSSNLGPSELKKHLDDLGDQLFTGTC-------NFTPNIKEQKNKPPQAF 260
           GQDVV+V QD SS+L    L+ HL DLGDQLFTG+C       N   +    + K P+AF
Sbjct: 187 GQDVVVVRQDKSSDLDNDLLRHHLYDLGDQLFTGSCLLSTRRLNKAYHHSHSQPKFPEAF 246

Query: 261 KVFD-PTPAAVNSFSSTSSKDGISVICSRRGGDPSAYSHCEWLLTVPSNPDAVHFNFIPI 319
            VFD     A N+FS  +S++GI+VIC++RGGD  A SH EWL+TVP  PDA++FNFIPI
Sbjct: 247 NVFDDKQTVAFNNFS-INSQNGITVICAKRGGDGRAKSHSEWLITVPDKPDAINFNFIPI 305

Query: 320 TSLLKGVPGKGFLSHAINLYLRYKPPITDLQYFLEFQAHKVWAPIHNDLPLGPTTNMTNP 379
           TSLLK VPG G LSHA++LYLRYKPP+ DLQYFL+F   + WAP+HNDLP G   NM + 
Sbjct: 306 TSLLKDVPGSGLLSHAMSLYLRYKPPLMDLQYFLDFSGPRAWAPVHNDLPFGAAPNMASA 365

Query: 380 SPALHFHLMGPKLYVNTMQVTTEKIPVTGVRLYLEGRKCNRLAVHLQHLSITPTMLDSKI 439
            PALH + MGPKLYVNT  VT+EK PVTG+R +LEG+KCNRLA+HLQHL  T T +  KI
Sbjct: 366 YPALHINFMGPKLYVNTTPVTSEKNPVTGMRFFLEGKKCNRLAIHLQHLDNTRTTVGEKI 425

Query: 440 DTDTQLWRGSDVTDDNHQYFEAIGGKYFSHICTAPVKYDPKW-------ATRKDVSFIVT 492
            TD  +WRGSD   DN +YFE + GK FSH+CT PVKYDP W        ++ DV+FIVT
Sbjct: 426 -TDEHIWRGSDQITDNDRYFEPLNGKKFSHVCTVPVKYDPNWIKTTSNHKSQNDVAFIVT 484

Query: 493 GAQLHVQKHESKSILHLRLLFSKVSHAFIVQSSWAQSSSEFSQKSGFFSAISAP-NSG-- 549
           GAQL V+KH SKS+LHLRL ++KVS  ++VQ+SW       SQKSG FS++S P  SG  
Sbjct: 485 GAQLEVKKHGSKSVLHLRLRYTKVSDHYVVQNSWVHGPIGTSQKSGIFSSMSMPLTSGSV 544

Query: 550 --NQEKEKKPVVIVDSSVFPTGPPVPVRTQKLLKFVDTSQLCRGPQDSPGHWLVTGAKLD 607
             N  ++ K  V++DS VFP GPPVP    K++KFVD SQLCRGPQ SPGHWLVTG +L 
Sbjct: 545 HHNMIQKDKNEVVLDSGVFPGGPPVPA-NNKIVKFVDLSQLCRGPQHSPGHWLVTGVRLY 603

Query: 608 LEKGKICLRVKFSLLN 623
           L+KGK+CL VKF+LL+
Sbjct: 604 LDKGKLCLHVKFALLH 619
Negatively controls the salicylic acid (SA)-mediated pathway of programmed cell death in plant immunity.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9STW5|MACP2_ARATH MACPF domain-containing protein At4g24290 OS=Arabidopsis thaliana GN=At4g24290 PE=2 SV=1 Back     alignment and function description
>sp|Q9SGN6|NSL1_ARATH MACPF domain-containing protein NSL1 OS=Arabidopsis thaliana GN=NSL1 PE=1 SV=1 Back     alignment and function description
>sp|Q9C7N2|CAD1_ARATH MACPF domain-containing protein CAD1 OS=Arabidopsis thaliana GN=CAD1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query626
224101909588 predicted protein [Populus trichocarpa] 0.937 0.998 0.730 0.0
224108259590 predicted protein [Populus trichocarpa] 0.940 0.998 0.729 0.0
297737612635 unnamed protein product [Vitis vinifera] 0.936 0.922 0.705 0.0
225424407602 PREDICTED: uncharacterized protein LOC10 0.936 0.973 0.705 0.0
356527855594 PREDICTED: uncharacterized protein LOC10 0.937 0.988 0.700 0.0
356511289594 PREDICTED: uncharacterized protein LOC10 0.937 0.988 0.695 0.0
307135833613 hypothetical protein [Cucumis melo subsp 0.939 0.959 0.643 0.0
449450151613 PREDICTED: MACPF domain-containing prote 0.939 0.959 0.645 0.0
297844390631 hypothetical protein ARALYDRAFT_471668 [ 0.934 0.927 0.602 0.0
15223887627 MAC/Perforin domain-containing protein [ 0.934 0.933 0.597 0.0
>gi|224101909|ref|XP_002312471.1| predicted protein [Populus trichocarpa] gi|222852291|gb|EEE89838.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  905 bits (2339), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/590 (73%), Positives = 503/590 (85%), Gaps = 3/590 (0%)

Query: 36  VERAISSLGKGFDLTSDFRLKYCKGKERLVVLNDADHEREITVPGFGSVNEVSIDIKCDK 95
           +ERA  SLG+GFDLTSDFRLK+CKG++RLV LN+A+ ++E+ VPGFG + +VS+DIKCDK
Sbjct: 1   MERAQKSLGRGFDLTSDFRLKFCKGEKRLVFLNEAE-KKELKVPGFGVIKDVSVDIKCDK 59

Query: 96  GDRTRYQSDILNFNQMSEFFNQNSAIPGKIPSGLFNNMFNFHSGSWAKDAGNTKYLGLDG 155
           GDR RYQSDIL F+QMSE FNQ +++PGKIPSGLFN+MF F   +WA DA NTK LGLDG
Sbjct: 60  GDRIRYQSDILEFHQMSELFNQKASVPGKIPSGLFNSMFGFEGCTWAADAANTKCLGLDG 119

Query: 156 YYIILFNVHIDRYPLVLSDEVRNAVPSSWDPFALARFIEKYGTHIIVGLSIGGQDVVLVN 215
           Y+I LF+  IDRYPLVL DEVR AVPSSWDP ALARFIEKYGTHIIVGLSIGGQDVVLV 
Sbjct: 120 YFISLFSFRIDRYPLVLCDEVRKAVPSSWDPCALARFIEKYGTHIIVGLSIGGQDVVLVR 179

Query: 216 QDNSSNLGPSELKKHLDDLGDQLFTGTCNFTPNIKEQKNKPPQAFKVFDPTPAAVNSFSS 275
           QD SSNLG SEL++HLDDLGDQLFTG CNFTP  ++QK+K PQAF VFDP P A +SFSS
Sbjct: 180 QDKSSNLGSSELQRHLDDLGDQLFTGICNFTPKARDQKSKTPQAFNVFDPQPVAFDSFSS 239

Query: 276 T-SSKDGISVICSRRGGDPSAYSHCEWLLTVPSNPDAVHFNFIPITSLLKGVPGKGFLSH 334
             S+KDGI+V+C+++GGD S  SHCEWL TVPS PDA+HF+FIPITSLLK VPGKGFLSH
Sbjct: 240 IRSTKDGITVLCAKKGGDTSVSSHCEWLPTVPSMPDAIHFSFIPITSLLKEVPGKGFLSH 299

Query: 335 AINLYLRYKPPITDLQYFLEFQAHKVWAPIHNDLPLGPTTNMTNPSPALHFHLMGPKLYV 394
           AINLYLRYKPPI+DL YFL+FQ+ K+WAP+HND PLGP+TN+ + S ALHF+L+GPKLYV
Sbjct: 300 AINLYLRYKPPISDLHYFLDFQSLKIWAPVHNDFPLGPSTNLASSSSALHFYLLGPKLYV 359

Query: 395 NTMQVTTEKIPVTGVRLYLEGRKCNRLAVHLQHLSITPTMLDSKIDTDTQLWRGSDVTDD 454
           NT QVT  K PVTG+R YLEG KCNRLA+HLQHL+ TP++L +KID   QLWRG+D T D
Sbjct: 360 NTSQVTVGKRPVTGMRFYLEGMKCNRLAIHLQHLANTPSILANKIDDSIQLWRGTDET-D 418

Query: 455 NHQYFEAIGGKYFSHICTAPVKYDPKWATRKDVSFIVTGAQLHVQKHESKSILHLRLLFS 514
           N  YFEAI  K FSH+CTAPVKYDP+W+TR+D ++IVTGA+L ++ H SK +LHLRLLFS
Sbjct: 419 NEGYFEAIHRKKFSHVCTAPVKYDPRWSTREDGAYIVTGAKLQIKNHNSKRVLHLRLLFS 478

Query: 515 KVSHAFIVQSSWAQSSSEFSQKSGFFSAISAPNSGNQEKEKKPVVIVDSSVFPTGPPVPV 574
           KVS++ IVQSSWAQ SS FSQ+SG FSAIS   +GN  KEK   V+VDSSVFP+GPPVPV
Sbjct: 479 KVSYSLIVQSSWAQGSSGFSQRSGLFSAISTSVTGNPGKEKPKPVVVDSSVFPSGPPVPV 538

Query: 575 RTQKLLKFVDTSQLCRGPQDSPGHWLVTGAKLDLEKGKICLRVKFSLLNI 624
           +TQKLLKFVD S LCRGPQDSPGHWLVTGA+LDL+KGKI L+VKFSLLNI
Sbjct: 539 QTQKLLKFVDISHLCRGPQDSPGHWLVTGARLDLDKGKISLQVKFSLLNI 588

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224108259|ref|XP_002314778.1| predicted protein [Populus trichocarpa] gi|222863818|gb|EEF00949.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297737612|emb|CBI26813.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225424407|ref|XP_002281436.1| PREDICTED: uncharacterized protein LOC100261217 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356527855|ref|XP_003532522.1| PREDICTED: uncharacterized protein LOC100786229 [Glycine max] Back     alignment and taxonomy information
>gi|356511289|ref|XP_003524359.1| PREDICTED: uncharacterized protein LOC100810933 [Glycine max] Back     alignment and taxonomy information
>gi|307135833|gb|ADN33704.1| hypothetical protein [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|449450151|ref|XP_004142827.1| PREDICTED: MACPF domain-containing protein At1g14780-like [Cucumis sativus] gi|449521647|ref|XP_004167841.1| PREDICTED: MACPF domain-containing protein At1g14780-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297844390|ref|XP_002890076.1| hypothetical protein ARALYDRAFT_471668 [Arabidopsis lyrata subsp. lyrata] gi|297335918|gb|EFH66335.1| hypothetical protein ARALYDRAFT_471668 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15223887|ref|NP_172931.1| MAC/Perforin domain-containing protein [Arabidopsis thaliana] gi|75153917|sp|Q8L612.1|MACP1_ARATH RecName: Full=MACPF domain-containing protein At1g14780 gi|20466444|gb|AAM20539.1| unknown protein [Arabidopsis thaliana] gi|27311987|gb|AAO00959.1| unknown protein [Arabidopsis thaliana] gi|332191104|gb|AEE29225.1| MAC/Perforin domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query626
TAIR|locus:2006807627 AT1G14780 "AT1G14780" [Arabido 0.932 0.931 0.581 3.5e-185
TAIR|locus:2135912606 AT4G24290 "AT4G24290" [Arabido 0.912 0.942 0.470 6.9e-134
TAIR|locus:2032532612 NSL1 "AT1G28380" [Arabidopsis 0.920 0.941 0.447 2e-120
TAIR|locus:2013673561 CAD1 "AT1G29690" [Arabidopsis 0.365 0.408 0.473 3.1e-112
TAIR|locus:2006807 AT1G14780 "AT1G14780" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1796 (637.3 bits), Expect = 3.5e-185, P = 3.5e-185
 Identities = 359/617 (58%), Positives = 437/617 (70%)

Query:    35 VVERAISSLGKGFDLTSDFRLKYCK------GKERLVVLNDADHEREITVPGFGSVNEVS 88
             V+E A+ SLGKGFDLT+DFRLKYCK      G +RLVVL D    RE+ +PGFG    VS
Sbjct:     8 VIETAVKSLGKGFDLTADFRLKYCKDGDGSAGDDRLVVL-DQTQNRELHIPGFGVFQNVS 66

Query:    89 IDIKCDKGDRTRYQSDILNFNQMSEFFNQNSAIPGKIPSGLFNNMFNFHSGSWAKDAGNT 148
              DI CDKG+RTR++SDIL+FN+MSE+FNQ S++ GKIPSG FN  F F SGSWA DA N 
Sbjct:    67 ADINCDKGERTRFRSDILDFNKMSEYFNQRSSVTGKIPSGNFNATFGFQSGSWATDAANV 126

Query:   149 KYLGLDGYYIILFNVHIDRYP--LVLSDEVRNAVPSSWDPFALARFIEKYGTHIIVGLSI 206
             K LGLD   + LFN+HI   P  L L+D VRNAVPSSWDP  LARFIE+YGTH+I G+S+
Sbjct:   127 KSLGLDASVVTLFNLHIHN-PNRLRLTDRVRNAVPSSWDPQLLARFIERYGTHVITGVSV 185

Query:   207 GGQDVVLVNQDNSSNLGPSELKKHLDDLGDQLFTGTC-------NFTPNIKEQKNKPPQA 259
             GGQDVV+V QD SS+L    L+ HL DLGDQLFTG+C       N   +    + K P+A
Sbjct:   186 GGQDVVVVRQDKSSDLDNDLLRHHLYDLGDQLFTGSCLLSTRRLNKAYHHSHSQPKFPEA 245

Query:   260 FKVFDPTPA-AVNSFSSTSSKDGISVICSRRGGDPSAYSHCEWLLTVPSNPDAVHFNFIP 318
             F VFD     A N+FS  +S++GI+VIC++RGGD  A SH EWL+TVP  PDA++FNFIP
Sbjct:   246 FNVFDDKQTVAFNNFS-INSQNGITVICAKRGGDGRAKSHSEWLITVPDKPDAINFNFIP 304

Query:   319 ITSLLKGVPGKGFLSHAINLYLRYKPPITDLQYFLEFQAHKVWAPIHNDLPLGPTTNMTN 378
             ITSLLK VPG G LSHA++LYLRYKPP+ DLQYFL+F   + WAP+HNDLP G   NM +
Sbjct:   305 ITSLLKDVPGSGLLSHAMSLYLRYKPPLMDLQYFLDFSGPRAWAPVHNDLPFGAAPNMAS 364

Query:   379 PSPALHFHLMGPKLYVNTMQVTTEKIPVTGVRLYLEGRKCNRLAVHLQHLSITPTMLDSK 438
               PALH + MGPKLYVNT  VT+EK PVTG+R +LEG+KCNRLA+HLQHL  T T +  K
Sbjct:   365 AYPALHINFMGPKLYVNTTPVTSEKNPVTGMRFFLEGKKCNRLAIHLQHLDNTRTTVGEK 424

Query:   439 IDTDTQLWRGSDVTDDNHQYFEAIGGKYFSHICTAPVKYDPKWA-------TRKDVSFIV 491
             I TD  +WRGSD   DN +YFE + GK FSH+CT PVKYDP W        ++ DV+FIV
Sbjct:   425 I-TDEHIWRGSDQITDNDRYFEPLNGKKFSHVCTVPVKYDPNWIKTTSNHKSQNDVAFIV 483

Query:   492 TGAQLHVQKHESKSILHLRLLFSKVSHAFIVXXXXXXXXXXXXXXXXXXXAISAP-NSG- 549
             TGAQL V+KH SKS+LHLRL ++KVS  ++V                   ++S P  SG 
Sbjct:   484 TGAQLEVKKHGSKSVLHLRLRYTKVSDHYVVQNSWVHGPIGTSQKSGIFSSMSMPLTSGS 543

Query:   550 ---NQEKEKKPVVIVDSSVFPTGPPVPVRTQKLLKFVDTSQLCRGPQDSPGHWLVTGAKL 606
                N  ++ K  V++DS VFP GPPVP    K++KFVD SQLCRGPQ SPGHWLVTG +L
Sbjct:   544 VHHNMIQKDKNEVVLDSGVFPGGPPVPANN-KIVKFVDLSQLCRGPQHSPGHWLVTGVRL 602

Query:   607 DLEKGKICLRVKFSLLN 623
              L+KGK+CL VKF+LL+
Sbjct:   603 YLDKGKLCLHVKFALLH 619
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0015824 "proline transport" evidence=RCA
TAIR|locus:2135912 AT4G24290 "AT4G24290" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032532 NSL1 "AT1G28380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013673 CAD1 "AT1G29690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8L612MACP1_ARATHNo assigned EC number0.59740.93450.9330yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query626
pfam01823209 pfam01823, MACPF, MAC/Perforin domain 6e-24
smart00457195 smart00457, MACPF, membrane-attack complex / perfo 2e-12
>gnl|CDD|216723 pfam01823, MACPF, MAC/Perforin domain Back     alignment and domain information 
 Score = 99.8 bits (249), Expect = 6e-24
 Identities = 55/228 (24%), Positives = 84/228 (36%), Gaps = 35/228 (15%)

Query: 128 GLFNNMFNFHSGSWAKDAGNTKYLGLDGYYIILFNVHIDRYP-LVLSDEVR---NAVPSS 183
           G F+    F      K         +   Y  L+   +     L LSDE     NA+PS+
Sbjct: 1   GSFSASSEF-KSLSNKTKQKKSSFIISKSYCSLYQFSLKPPNDLELSDEFLKALNALPST 59

Query: 184 WDPFALA---RFIEKYGTHIIVGLSIGGQDVVLVNQDNSSNLGPSELKKHLDDLGDQLFT 240
           +D        +F EKYGTH I  +++GG+ V ++  D+      S++KK      D +  
Sbjct: 60  YDSATKDSYIQFFEKYGTHYITSVTLGGKIVYVLKLDS------SQVKKLKLTGSDCVSA 113

Query: 241 GTCNFTPNIKEQKNKPPQAFKVFDPTPAAVNSFSSTSSKDGISVICSRRGG--------D 292
                   +  +  K   +                +SS    S      GG        D
Sbjct: 114 EAGASFGKVSSKGCKSTSSS----------QKEKKSSSSSIESSKTDVIGGTPEFNAGSD 163

Query: 293 PSAYSHCEWLLTVPSNPDAVHFNFIPITSLLK-GVPGKGFLSHAINLY 339
           P  YS  +W  +V  NP  + +  +PI+ LLK     K  L  A+  Y
Sbjct: 164 PKTYS--KWAESVKDNPMPIKYKLVPISELLKEVPCKKENLKKALEEY 209

The membrane-attack complex (MAC) of the complement system forms transmembrane channels. These channels disrupt the phospholipid bilayer of target cells, leading to cell lysis and death. A number of proteins participate in the assembly of the MAC. Freshly activated C5b binds to C6 to form a C5b-6 complex, then to C7 forming the C5b-7 complex. The C5b-7 complex binds to C8, which is composed of three chains (alpha, beta, and gamma), thus forming the C5b-8 complex. C5b-8 subsequently binds to C9 and acts as a catalyst in the polymerisation of C9. Active MAC has a subunit composition of C5b-C6-C7-C8-C9{n}. Perforin is a protein found in cytolytic T-cell and killer cells. In the presence of calcium, perforin polymerises into transmembrane tubules and is capable of lysing, non-specifically, a variety of target cells. There are a number of regions of similarity in the sequences of complement components C6, C7, C8-alpha, C8-beta, C9 and perforin. The X-ray crystal structure of a MACPF domain reveals that it shares a common fold with bacterial cholesterol dependent cytolysins (pfam01289) such as perfringolysin O. Three key pieces of evidence suggests that MACPF domains and CDCs are homologous: Functional similarity (pore formation), conservation of three glycine residues at a hinge in both families and conservation of a complex core fold. Length = 209
>gnl|CDD|214671 smart00457, MACPF, membrane-attack complex / perforin Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 626
PTZ00482844 membrane-attack complex/perforin (MACPF) Superfami 99.92
smart00457194 MACPF membrane-attack complex / perforin. 99.92
PF01823212 MACPF: MAC/Perforin domain; InterPro: IPR020864 Th 99.92
PTZ00481524 Membrane attack complex/ Perforin (MACPF) Superfam 99.79
>PTZ00482 membrane-attack complex/perforin (MACPF) Superfamily; Provisional Back     alignment and domain information 
Probab=99.92  E-value=3.5e-25  Score=254.18  Aligned_cols=328  Identities=18%  Similarity=0.190  Sum_probs=194.3

Q ss_pred             HHHhhhcceeeeeccCccccc----cCCCCC--ceEEec-----CCC-cceeeEecCCeeeeeeccceeeecCCceEEee
Q 006910           36 VERAISSLGKGFDLTSDFRLK----YCKGKE--RLVVLN-----DAD-HEREITVPGFGSVNEVSIDIKCDKGDRTRYQS  103 (626)
Q Consensus        36 a~~ai~~LG~GyDIt~D~rl~----~ck~gs--r~i~id-----~~~-~~r~~~iP~gv~v~~v~~~~kC~k~~s~~y~S  103 (626)
                      ..+++++||.||||+..-.+.    .-++|=  .++...     ++. +.+.+-.|-|+   .+|....|.+++....-+
T Consensus       242 ~~~gleYLG~GYDIi~GNPlGd~~~~vDPGYR~pII~~~~~~n~~~~~nd~~~~~P~G~---wIR~e~sC~rSe~i~eI~  318 (844)
T PTZ00482        242 VFPGLYFLGIGYDSLFGNPLGEPDSLTDPGYRGQIILMNWAQSNDGVANDLATLQPLNG---WIRKENACSRSESIKECS  318 (844)
T ss_pred             ccccceecccceeceecCCCCCccccCCCcccchhhcccccccccccCccccccCCCCc---eeccccceeccccceeec
Confidence            378999999999999321111    122221  222221     010 22345667674   348899999985554444


Q ss_pred             hhHhHHHHHHHhccccccccccC-CcceeEEEEEccccccccc-cccceEEEEeEEEEEEEEEEcC-CCCCCCHHHHhh-
Q 006910          104 DILNFNQMSEFFNQNSAIPGKIP-SGLFNNMFNFHSGSWAKDA-GNTKYLGLDGYYIILFNVHIDR-YPLVLSDEVRNA-  179 (626)
Q Consensus       104 ~v~~~~qmss~fn~~~slggkIp-sG~fna~f~~~sGS~skda-s~tKsfa~~~~~i~ly~~~L~~-~~L~Ls~eF~~a-  179 (626)
                      +   +++....++.+.++++.++ .+.|+|+.+| .......+ ..+|.|+.. .+|..|.+.|.. .+..|+++|+++ 
T Consensus       319 s---isdy~ksLS~dasvsgs~~g~~sFSAS~gY-k~f~~~lskk~~k~fi~k-s~C~~Y~~~L~~~~~~~Lt~~F~~aL  393 (844)
T PTZ00482        319 S---LSDYTKNLSAEASVSGSYMGINSFSASTGY-KKFLQEVSKRTTKTYLLK-SNCVKYTAGLPPYFKWNQTTAFKNAV  393 (844)
T ss_pred             c---HHHhhhheeeeeecccccccceeeecccch-HHHHHHHhhcceeEEEEe-eeEEEEEEeccccCCCccCHHHHHHH
Confidence            4   4555566777888877755 3446555555 21111111 233456655 499999999998 445699999999 


Q ss_pred             --CCCCCC------------------------HHHHHHHHHccceEEEEeeEEcceEEEEEeeeccCCCCH-HHHHhhHh
Q 006910          180 --VPSSWD------------------------PFALARFIEKYGTHIIVGLSIGGQDVVLVNQDNSSNLGP-SELKKHLD  232 (626)
Q Consensus       180 --LP~~yd------------------------p~~Y~~FIe~YGTHyItsvtLGGkdv~~vkq~~sS~ls~-sEvk~cL~  232 (626)
                        ||..|+                        ...|++||++|||||+++++|||+-...+ +.+  +.+. +..+.|++
T Consensus       394 ~~LP~~f~~~~~~~~Cs~~~Y~~n~~~e~C~~i~~W~~f~~~yGTH~~~~~~lGG~I~~~~-~le--~s~~e~lkk~~ls  470 (844)
T PTZ00482        394 NGLPPVFDGLEAESECSSDVYEQDKTAEECENVPIWISFFEQYGTHIIMELQLGGKITKQV-TVK--NSSVEQMKKDGVS  470 (844)
T ss_pred             HhcchhhhcccccccCCHHHhhhcccccccccHHHHHHHHHHcCceEEEEEEeccEEEEEE-Eec--chhHHHHHhcCcc
Confidence              899887                        35699999999999999999999933222 122  2232 34667877


Q ss_pred             hccceEE--eeeeccCCcccccCCCCCCCccccCCCCCcccccccccccCCeeEEeeecCCCC-----ChhcHHHHHhcC
Q 006910          233 DLGDQLF--TGTCNFTPNIKEQKNKPPQAFKVFDPTPAAVNSFSSTSSKDGISVICSRRGGDP-----SAYSHCEWLLTV  305 (626)
Q Consensus       233 ~~a~~~f--~~~~~sss~~~~~k~~~~~sf~~~~~~~~~er~~sev~~~edl~vI~~~rGG~~-----~~~~~s~Wl~SV  305 (626)
                      +++.+..  ...+...+.....+.....++++    ...++         . ++   ++||.+     ++..|.+|++||
T Consensus       471 VkA~~k~~~g~~S~ggs~~~ss~~eskss~~~----~~~sk---------~-t~---ViGG~~~~d~~d~~~~~~W~~SV  533 (844)
T PTZ00482        471 VKAQVKAQFGFASAGGSTNVSSDNSSASNEYS----YNMSE---------Q-LL---VIGGNPIKDVTKEENLAEWSKTV  533 (844)
T ss_pred             eeeeehhccccceecccccccchhhhhhhhhh----hccce---------E-EE---EECCCCCCCCCChHHHHHHHHHh
Confidence            7776443  11111110000000011111211    00111         1 21   568853     456899999999


Q ss_pred             CCCCceeeeecccccccccCChhhhHHHHHHHHHHHhC-CCccchhhhhhhcc--cccccc-ccCCCCCCCCCCCCCCCC
Q 006910          306 PSNPDAVHFNFIPITSLLKGVPGKGFLSHAINLYLRYK-PPITDLQYFLEFQA--HKVWAP-IHNDLPLGPTTNMTNPSP  381 (626)
Q Consensus       306 ~~nPdvI~~kL~PI~eLl~~~pkk~nLk~AI~~YL~~K-p~ieeL~~fleFq~--P~~wAP-~~~~lpl~~~~r~~~~~p  381 (626)
                      +.+|++|+++|.||++||+...+|++|++||+.|++-. -.+++..+--|.-|  =.+|+- +.++-+    -.-...||
T Consensus       534 ~~nP~pI~~~l~PI~~Ll~~~~~ke~y~kAI~~Yi~l~G~~p~~~~~~~~~~I~~~l~~~t~i~~~g~----~~i~a~CP  609 (844)
T PTZ00482        534 STLPMPINIELLPISTLFPSDDLKESYEKAVIYYSRLYGLSPHDTMQKDEKDIVKILTAATTVTWSGA----PPISAECP  609 (844)
T ss_pred             hcCCcceEEEeEEHHHhcCChhhHHHHHHHHHHHHHHhCCChhHhhccccccHHHHHhhCcEEeecCC----CceeEECC
Confidence            99999999999999999999889999999999999953 33333111001000  012222 222111    01223688


Q ss_pred             ceeEEeecceeeee
Q 006910          382 ALHFHLMGPKLYVN  395 (626)
Q Consensus       382 ~l~fs~~gpkl~v~  395 (626)
                      .=+--+||-=|-++
T Consensus       610 ~g~vIlfGFiL~~~  623 (844)
T PTZ00482        610 HGQVVLFGFAMRQN  623 (844)
T ss_pred             CCCEEEEEEEEEee
Confidence            88877887776554

>smart00457 MACPF membrane-attack complex / perforin Back     alignment and domain information
>PF01823 MACPF: MAC/Perforin domain; InterPro: IPR020864 The membrane attack complex/perforin (MACPF) domain is conserved in bacteria, fungi, mammals and plants Back     alignment and domain information
>PTZ00481 Membrane attack complex/ Perforin (MACPF) Superfamily; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query626
2rd7_A367 Complement component C8 alpha chain; membrane atta 1e-28
2qp2_A511 Unknown protein; toxin, unknown function; 2.00A {P 8e-27
3nsj_A540 Perforin-1; pore forming protein, immune system; H 6e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
3ojy_B537 Complement component C8 beta chain; macpf, lipocal 2e-08
3ojy_A554 Complement component C8 alpha chain; macpf, lipoca 1e-07
3t5o_A 913 Complement component C6; macpf, MAC, membrane atta 1e-06
>2rd7_A Complement component C8 alpha chain; membrane attack system, cleavage on PAIR of basic residues, complement alternate pathway, complement pathway; 2.15A {Homo sapiens} PDB: 2qqh_A Length = 367 Back     alignment and structure
 Score =  116 bits (291), Expect = 1e-28
 Identities = 42/345 (12%), Positives = 93/345 (26%), Gaps = 46/345 (13%)

Query: 40  ISSLGKGFDLTS----------DFRLKYCKGKERLVV-----------LNDADHEREITV 78
                 G+++ +           +    C+                  L   D E+    
Sbjct: 24  SQKAALGYNILTQEDAQSVYDASYYGGQCETVYNGEWRELRYDSTCERLYYGDDEKYFRK 83

Query: 79  PGFGSVNEVSIDIKCDKGDRTRYQSDILNFN---QMSEFFNQNSAIPGKIPSGLFNNMFN 135
           P   +  +   +   D G  + +  +  +     +  +  +    I              
Sbjct: 84  PY--NFLKYHFEALADTGISSEFYDNANDLLSKVKKDKSDSFGVTIGIGPAGSPLLVGVG 141

Query: 136 FHSGSWAKDAGNTKYLGLDGYY-------IILFNVHIDRYPLVLSDEVRNAV---PSSWD 185
                               +        +   +  + +  ++L + +  ++   P  ++
Sbjct: 142 VSHSQDTSFLNELNKYNEKKFIFTRIFTKVQTAHFKMRKDDIMLDEGMLQSLMELPDQYN 201

Query: 186 PFALARFIEKYGTHIIVGLSIGGQ----DVVLVNQDNSSNLGPSELKKHLDDLGDQLFTG 241
               A+FI  YGTH I   S+GG      V+   +  S  +   ++           +  
Sbjct: 202 YGMYAKFINDYGTHYITSGSMGGIYEYILVIDKAKMESLGITSRDITTCFGGSLGIQYED 261

Query: 242 TCNFTPNIKEQKNKPPQAFKVFDPTPAAVNSFSSTSSKDGISVICSRRGGDPSAYSHCEW 301
             N    +     K     K      A       +  + G S        + S  ++  W
Sbjct: 262 KINVGGGLSGDHCKKFGGGKTERARKAMAVEDIISRVRGGSSGWSGGLAQNRSTITYRSW 321

Query: 302 LLTVPSNPDAVHFNFIPITSLLKGVPGKGF------LSHAINLYL 340
             ++  NP  + F   PI  +L+             L  A++ YL
Sbjct: 322 GRSLKYNPVVIDFEMQPIHEVLRHTSLGPLEAKRQNLRRALDQYL 366
>2qp2_A Unknown protein; toxin, unknown function; 2.00A {Photorhabdus luminescens subsp} Length = 511 Back     alignment and structure
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} Length = 537 Back     alignment and structure
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} Length = 554 Back     alignment and structure
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B* Length = 913 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query626
3nsj_A540 Perforin-1; pore forming protein, immune system; H 100.0
3ojy_A554 Complement component C8 alpha chain; macpf, lipoca 100.0
3ojy_B537 Complement component C8 beta chain; macpf, lipocal 100.0
3t5o_A 913 Complement component C6; macpf, MAC, membrane atta 100.0
2rd7_A367 Complement component C8 alpha chain; membrane atta 100.0
2qp2_A511 Unknown protein; toxin, unknown function; 2.00A {P 100.0
3kk7_A541 Putative cell invasion protein with MAC/perforin; 99.49
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Back     alignment and structure
Probab=100.00  E-value=1.3e-46  Score=419.48  Aligned_cols=314  Identities=16%  Similarity=0.216  Sum_probs=247.1

Q ss_pred             HHhhhcceeeeeccC-cc----ccccCCC---CCceEEecCCC-cceeeEecCCeeeeeeccc-eeeecC-CceEEeehh
Q 006910           37 ERAISSLGKGFDLTS-DF----RLKYCKG---KERLVVLNDAD-HEREITVPGFGSVNEVSID-IKCDKG-DRTRYQSDI  105 (626)
Q Consensus        37 ~~ai~~LG~GyDIt~-D~----rl~~ck~---gsr~i~id~~~-~~r~~~iP~gv~v~~v~~~-~kC~k~-~s~~y~S~v  105 (626)
                      .++++.+|.||||+. +.    -+|+-.+   ||.|..+.+.. ....||+|+|+  .+|+++ ++|++. +++.|+|..
T Consensus        17 ~Pg~~l~G~G~nilt~e~~g~~VlD~~~~~~~~G~C~~c~~~~~~~~~~RlP~nv--~~~~~~~~~~~~~~s~e~y~s~~   94 (540)
T 3nsj_A           17 VPGVWMAGEGMDVTTLRRSGSFPVNTQRFLRPDRTCTLCKNSLMRDATQRLPVAI--THWRPHSSHCQRNVAAAKVHSTE   94 (540)
T ss_dssp             CTTGGGTTCEEETTTTEECSCCSBCCCCCSCTTSCEEEEEETTTTTEEEEECTTE--EEEEECCSCCCCCCEEEEECSHH
T ss_pred             CCChHHhcCCEEEecCcccCCEeEechhccCCCCeeeEecccccCCceeecccee--eeEEEEEeeeeeeechhhcccHH
Confidence            579999999999994 33    4776776   57897766332 22349999994  578999 999999 999999999


Q ss_pred             HhHHHHHHHhccccccccccC-CcceeEEEEEccccccccc--cc------cceEEEEeEEEEEEEEEEcCCCCCCCHHH
Q 006910          106 LNFNQMSEFFNQNSAIPGKIP-SGLFNNMFNFHSGSWAKDA--GN------TKYLGLDGYYIILFNVHIDRYPLVLSDEV  176 (626)
Q Consensus       106 ~~~~qmss~fn~~~slggkIp-sG~fna~f~~~sGS~skda--s~------tKsfa~~~~~i~ly~~~L~~~~L~Ls~eF  176 (626)
                      .+++++++..+++|+++++|+ .+.+++++++ ++++++.+  +.      +.+|+++...|++|+|+|.. +++|+++|
T Consensus        95 ~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~-~~s~s~~~~~a~~~s~~~~~~F~~~~~~~~~~~~~~~~-~~~L~~~F  172 (540)
T 3nsj_A           95 GVAREAAANINNDWRVGLDVNPRPEANMRASV-AGSHSKVANFAAEKTYQDQYNFNSDTVECRMYSFRLVQ-KPPLHLDF  172 (540)
T ss_dssp             HHHHHHHTTBCSCTTTTSCCC-CCSTTTTCBC-TTTTSHHHHHHHHHHHHSCEEEEEEEEEEEEEEEEECS-SCCBCHHH
T ss_pred             HHHHHHhhhcccccceeeecccccccceeEEe-ecccchhhHHHHHhhhccceEEEEEEEEEEEEEEEeCC-CCCCCHHH
Confidence            999999999999999999987 2234556667 77776544  22      23499999999999999984 78899999


Q ss_pred             Hhh---CCCCCCH---HHHHHHHHccceEEEEeeEEcce-E-EEEEeee--ccCCCCHHHHHhhHhhccceEEe-eeecc
Q 006910          177 RNA---VPSSWDP---FALARFIEKYGTHIIVGLSIGGQ-D-VVLVNQD--NSSNLGPSELKKHLDDLGDQLFT-GTCNF  245 (626)
Q Consensus       177 ~~a---LP~~ydp---~~Y~~FIe~YGTHyItsvtLGGk-d-v~~vkq~--~sS~ls~sEvk~cL~~~a~~~f~-~~~~s  245 (626)
                      +++   ||..||+   ++|++||++||||||++++|||+ + +++++++  +.++++.+|+++||+.++++++. ....+
T Consensus       173 ~~~l~~LP~~~~~~~~~~Y~~fi~~yGTHyi~s~~lGG~~~~i~~~~~~~~~~~~~t~~ev~~Cl~~e~~~~~~~~~~~~  252 (540)
T 3nsj_A          173 KKALRALPRNFNSSTEHAYHELISSYGTHFITAVDLGGRISVLTALRTCQLTLNGLTADEVGDCLNVEAQVSIGAQASVS  252 (540)
T ss_dssp             HHHHHTSCSSCCSSTHHHHHHHHHHHCSEEEEEEEEEEEEEEEEEEEHHHHHHTTCCHHHHHHHHHHHHHHHHTSSCSCS
T ss_pred             HHHHHhcccccCcccHHHHHHHHHhcCcEEEEeeeccceEEEEEEEehHhHhhcCCCHHHHHHHHhhcccEEEEEeEeec
Confidence            998   9999999   99999999999999999999999 4 4566754  56799999999999988876653 12111


Q ss_pred             C-Cc-cccc--CCCCCCCccccCCCCCcccccccccccCCeeEEeeecCCC------------CChhcHHHHHhcCCCCC
Q 006910          246 T-PN-IKEQ--KNKPPQAFKVFDPTPAAVNSFSSTSSKDGISVICSRRGGD------------PSAYSHCEWLLTVPSNP  309 (626)
Q Consensus       246 s-s~-~~~~--k~~~~~sf~~~~~~~~~er~~sev~~~edl~vI~~~rGG~------------~~~~~~s~Wl~SV~~nP  309 (626)
                      . .+ .++.  +.+...+|++               ..++..  ..+|||.            .+++.|++|++||+++|
T Consensus       253 ~~~~~C~~~~~~~~~~~~~~~---------------~~~~~~--~~V~GG~~~~~~~L~~~~~~~p~~~~~W~~Sv~~~P  315 (540)
T 3nsj_A          253 SEYKACEEKKKQHKMATSFHQ---------------TYRERH--VEVLGGPLDSTHDLLFGNQATPEQFSTWTASLPSNP  315 (540)
T ss_dssp             HHHHHHHHHHHHTTCSSCHHH---------------HCCCEE--EEEESSCGGGCCCSSSCSSCCHHHHHHHHHHTTTSC
T ss_pred             ccccccccccccccccCCccc---------------ccceEE--EEEeCCCccchhhhhcccCCCHHHHHHHHHHHhhCC
Confidence            1 11 1111  2233444443               223443  3477885            24678999999999999


Q ss_pred             ceeeeecccccccccC-ChhhhHHHHHHHHHHHhCCCccchhhhhhhcccc-ccc-cccCCCCCCCCCCCCCCCCcee
Q 006910          310 DAVHFNFIPITSLLKG-VPGKGFLSHAINLYLRYKPPITDLQYFLEFQAHK-VWA-PIHNDLPLGPTTNMTNPSPALH  384 (626)
Q Consensus       310 dvI~~kL~PI~eLl~~-~pkk~nLk~AI~~YL~~Kp~ieeL~~fleFq~P~-~wA-P~~~~lpl~~~~r~~~~~p~l~  384 (626)
                      ++|+++|.|||+||+. .+||+||++||++||.+            | .|| +|+ ||+||.+...+..|.|+||.-.
T Consensus       316 ~~I~~~l~PI~~Lv~~~~~kr~nLk~Ai~~Yl~e------------~-~~c~~C~~PC~nn~~~l~g~~C~C~C~~~~  380 (540)
T 3nsj_A          316 GLVDYSLEPLHTLLEEQNPKREALRQAISHYIMS------------R-ARWQNCSRPCRSGQHKSSHDSCQCECQDSK  380 (540)
T ss_dssp             EEEEEEEEEGGGGSCTTCTHHHHHHHHHHHHHHH------------T-CBCCCTTSCCBTTEEECSSCTTCEEESCTT
T ss_pred             ceEEEEEEEHHHhcCCcHHHHHHHHHHHHHHHHh------------c-CchhhhcccccCCCccCCCCceEeeCCCCC
Confidence            9999999999999994 78999999999999996            5 999 997 9999965567899999999753
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} Back     alignment and structure
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} Back     alignment and structure
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B* Back     alignment and structure
>2rd7_A Complement component C8 alpha chain; membrane attack system, cleavage on PAIR of basic residues, complement alternate pathway, complement pathway; 2.15A {Homo sapiens} PDB: 2qqh_A Back     alignment and structure
>2qp2_A Unknown protein; toxin, unknown function; 2.00A {Photorhabdus luminescens subsp} Back     alignment and structure
>3kk7_A Putative cell invasion protein with MAC/perforin; STR genomics, joint center for structural genomics, JCSG; 2.46A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00