Citrus Sinensis ID: 006913

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620------
Protein Sequence
MQDIGFDSFHSYRSCFPFLTFASFSSSAKVPYRRSAFRLSKPLIGEDGKIYACSEKTLFAFESNGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVAENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPSGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLMVVGQFSSLLSKSDLQHFVLDESLVLAFLTASNQKLVASCSQTRPKLPSIYTGNERAILLFLFFESVVLLVLAVLVRFCCIFWRKKKLQGQHLGNFLEKRRSLQLKKKAFDRSITELEKKVAEDAVANEVIKKSVVCLGRDEAAASSESKSFPPVYDAKSRSYSFQGAKKESVTIFHTLSATSSAESSSERETSWVSEDKDQSTAKAKAKAKAKAPIKAESSSDGDGIMDKEYRRSPSEPASSSRGFINPLLLKQEKLQDKGEVVESMSSSIRSMLLLKRRRTLSSTN
Secondary Structure (PSIPRED)
ccccccccccccccccEEEEEEEccccccEEEEEcccEEcccEEEcccEEEEEcccEEEEEcccccEEEEEEcccccEEEEccEEEcccEEEEEEcccEEEEEEEcccccccEEEEEEcccccccccccEEEEEEEEcccEEEEEEcccEEEEEEccccEEEEEcccccccccccccEEcccccEEEcccEEEccccEEEEEccccEEEEEEccccEEEEEEEcccccccEEEEEEcccEEEEEEccccEEEEEEcccccEEEEEEccccccEEEEEEEEcccEEEEEccccEEEEEcccccEEEEEEccccccEEEEcccEEEEcEEEEEccEEEEEEEccEEEEEEEcccccEEEEcccEEEEEEEcccccEEEEEcccccccccEEccccEEEEEEEEccccHHHHHHHHEEEEEEEEEEHHcccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHEEccEEEEcccccccccccccccccccccccEEEcccccEEEEEEEEEcccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHcccHHHHHHHcccccccEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccEEEEEEEEEcccccccccccEEEcccEEccccEEEEEccccEEEEccccEEEEEEEccccccccccccEccccEEEEEEcccEEEEEccccccccccEEEEEEccccccccccEEEEEEEccccEEEEEEccccEEEEcccccEEEEccccHHHccccccccccccccEEcccccEcccccEEEEEccccEEEEEEccccEEEEEEEccccccccccccccccEEEEEEccccEEEEEEccccEEEEEEEcccccccccccEEccccEEEEEccccEEEEEcccccccccccccccccEEEEccEEEEEEccccccEEEEEEEccccccHHHccccHHHcEccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEccccccccccccccccEcccccEEEEEcccccccEEEEEEccccccccccccccccccccccccccHHHHHHHHcccccccccccccHHHHHHHHcccccccccccccEcccccEEccHHHHHHHHHHcccccccccEEEEEEcccccccc
Coil and Loop (DISEMBL)
mqdigfdsfhsyrscfpfltfasfsssakvpyrrsafrlskpligedgkiyacSEKTLFAFEsngtiawsldldftcnigtapvhggtgEVYIVAENRVLKVDLLKigtsesatqvfygtgsgkggtgAIAGIAVSTSSSSVYINVKGRALFAFMTHGqllwsagpvldqlgyrqgctktdvdcyftsvpvidqcegsiyisntqgelyslsahspyfnwiqDLSSfdkaftltpgnngylyvTIPVRALVLALDtssgnilwhksvgplgsaeyapvvdsngwisvgsldgllysfspsgvlnkfsksdtsdsviqsspywfhllgpsiGLKAILCLMVVGQFSSLLSKSDLQHFVLDESLVLAFLTASNQKLVascsqtrpklpsiytgNERAILLFLFFESVVLLVLAVLVRFCCIFWRKKKLQGQHLGNFLEKRRSLQLKKKAFDRSITELEKKVAEDAVANEVIKKSVVCLgrdeaaassesksfppvydaksrsysfqgakkeSVTIFHTLsatssaessseretswvsedkdQSTAKAKAKAKakapikaesssdgdgimdkeyrrspsepasssrgfinplllkQEKLQDKGEVVESMSSSIRSMLLLKRRRTLSSTN
Flexible Loop (DISEMBL)
mqdigfdsFHSYRSCFPFLTFASFSSSAKVPYRRSAFrlskpligedgKIYACSEKTLFAFESNGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVAENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPSGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLMVVGQFSSLLSKSDLQHFVLDESLVLAFLTASNQKLVASCSQTRPKLPSIYTGNERAILLFLFFESVVLLVLAVLVRFCCIFWRKKKLQGQHLGNFLEKRRSLQLKKKAFDRSITELekkvaedavanevIKKSVVCLGRDeaaassesksfppvydAKSRSYSFQGAKKESVTIFHTLsatssaessseretswvsedkdqstAKAKAkakakapikaesssdgdgimDKEYRrspsepasssrgfinpLLLKQEKLQDKGEVVesmsssirsmlllkrrrtlsstn
Low Complexity Region (SEG)
MQDIGFDSFHSYRSCFPFLTFASFSSSAKVPYRRSAFRLSKPLIGEDGKIYACSEKTLFAFESNGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVAENRVLKVDLLKIGTSESATQVFYgtgsgkggtgaiagiavstSSSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPSGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLMVVGQFSSLLSKSDLQHFVLDESLVLAFLTASNQKLVASCSQTRPKLPSIYTGNERAIllflffesvvllvlavlvrfCCIFWRKKKLQGQHLGNFLEKRRSLQLKKKAFDRSITELEKKVAEDAVANEVIKKSVVCLGRDEAAASSESKSFPPVYDAKSRSYSFQGAKKESVTIFHTLsatssaessseretsWVSEDKDQSTakakakakakapikaESSSDGDGIMDKEYrrspsepasssrGFINPLLLKQEKLQDKGEVVEsmsssirsmlllkrrrtlssTN
Disordered region (IsUnstruct)
****GFDSFHSYRSCFPFLTFASFSSSAKVPYRRSAFRLSKPLIGEDGKIYACSEKTLFAFESNGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVAENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWH*************VVDSNGWISVGSLDGLLYSFSPSGVLNKF********VIQSSPYWFHLLGPSIGLKAILCLMVVGQFSSLLSKSDLQHFVLDESLVLAFLTASNQKLVASCSQTRPKLPSIYTGNERAILLFLFFESVVLLVLAVLVRFCCIFWRKKKLQGQHLGNFLEKRRSLQLKKKAFDRSITELEKKVAEDAVANEVIKKSVVCLG*****************************************************************************************************************************************************
Disordered Region (DISOPRED)
****GF*SFHSYRSCFPFLTFASFSSSAKVPYRRSAFRLSKPLIGEDGKIYACSEKTLFAFESNGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVAENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPSGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLMVVGQFSSLLSKSDLQHFVLDESLVLAFLTASNQKLVASCSQTRPKLPSIYTGNERAILLFLFFESVVLLVLAVLVRFCCIFWRKKKLQGQ********************************************V******************VYD****************TI****************************************************************************L***********************LLL***RT*****
Disordered Region (DISEMBL)
MQDIGFDSFHSYRSCFPFLTFASFSSSAKVPYRRSAFRLSKPLIGEDGKIYACSEKTLFAFESNGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVAENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPSGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLMVVGQFSSLLSKSDLQHFVLDESLVLAFLTASNQKLVASCSQTRPKLPSIYTGNERAILLFLFFESVVLLVLAVLVRFCCIFWRKKKLQGQHLGNFLEKRRSLQLKKKAFDRSITELEKKVAEDAVANEVIKKSVVCLGRD*************************GAKKESVTIFHTL**********************************************DGIMDKE************RGFINPLLLKQEKL************SIRSMLLLKRRRTLSSTN
Disordered Region (DISPRO)
***IGFDSFHSYRSCFPFLTFASFSSSAKVPYRRSAFRLSKPLIGEDGKIYACSEKTLFAFESNGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVAENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPSGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLMVVGQFSSLLSKSDLQHFVLDESLVLAFLTASNQKLVASCSQTRPKLPSIYTGNERAILLFLFFESVVLLVLAVLVRFCCIFWRKKKLQGQHLGNFLEKRRSLQLKKKAFDRSITELEKKVAEDAVANEVIKKSVVCLGRDEAAASSESKSFPPVYDAKSRSYSFQGAKKESVTIFHTL********************************************DGDGIMDKEYRRSPSEPASSSRGFINPLLLKQEKLQDKGEVVESMSSSIRSMLL***********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQDIGFDSFHSYRSCFPFLTFASFSSSAKVPYRRSAFRLSKPLIGEDGKIYACSEKTLFAFESNGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVAENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPSGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLMVVGQFSSLLSKSDLQHFVLDESLVLAFLTASNQKLVASCSQTRPKLPSIYTGNERAILLFLFFESVVLLVLAVLVRFCCIFWRKKKLQGQHLGNFLEKxxxxxxxxxxxxxxxxxxxxxVAEDAVANEVIKKSVVCLGRDEAAASSESKSFPPVYDAKSRSYSFQGAKKESVTIFHTLSATSSAESSSERETSWVSEDKDQSTAKAKAKAKAKAPIKAESSSDGDGIMDKEYRRSPSEPASSSRGFINPLLLKQEKLQDKGEVVESMSSSIRSMLLLKRRRTLSSTN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	626	2.2.26 [Sep-21-2011]
Q9LFS2	641	Protein GAMETE EXPRESSED	yes	no	0.841	0.822	0.425	1e-116

>sp|Q9LFS2|GEX3_ARATH Protein GAMETE EXPRESSED 3 OS=Arabidopsis thaliana GN=GEX3 PE=2 SV=1

 Score =  418 bits (1075), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 254/597 (42%), Positives = 341/597 (57%), Gaps = 70/597 (11%)

Query: 33  RRSAFRLSKPLIGEDGKIYACSEKTLFAFESNGTIAWSLDLDFTCNIGTAPVHGGTGEVY 92
           ++S   LSK LIG+DG++YACS+   F+FESNG+IAWS+ ++F CN   APV+ G  ++ 
Sbjct: 37  KKSVRILSKILIGDDGRVYACSDNDFFSFESNGSIAWSVHMNFKCNTDFAPVYSGFNQML 96

Query: 93  IVAENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALF 152
           ++AENR+L+V   + GT +S  ++F+  G        I G AVS SSSSVYI VK   L+
Sbjct: 97  LLAENRILRVIFPRNGT-KSEPELFFDPGE------TILGFAVSVSSSSVYITVKNHGLY 149

Query: 153 AFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLS 212
           A+    Q LW A P +++ GYR GC K   +C F S PVID CEGSIYISN +GELYSLS
Sbjct: 150 AYNMFRQQLWIAEPKIERFGYRLGCRKDFDNCTFNSRPVIDSCEGSIYISNNEGELYSLS 209

Query: 213 AHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGS 272
               Y+ WIQD S  D+ FT+TPGNNG +YV  P+++LV ALD+ SG+ILW K++GPL  
Sbjct: 210 LRGTYYQWIQDFSLVDRFFTVTPGNNGLVYVVFPIKSLVFALDSFSGDILWQKTIGPLAE 269

Query: 273 AEYA-PVVDSNGWISVGSLDGLLYSFSPSGVLNKFSKSDTSDSVIQSSPYW--------- 322
              + PV+DSN W S+GSLDG LYSFS +G L K  K+  +DSVIQ  P           
Sbjct: 270 TSASDPVIDSNSWASIGSLDGTLYSFSRTGDLYKIPKNAETDSVIQIEPLLDCSGYAVYV 329

Query: 323 ---------------FHLLGPSIGLKAILCLMV------------VGQFSSLLSKSDLQH 355
                          +  +       A+  L+V              Q   LL   DLQH
Sbjct: 330 SQTKFEGMIDRVIEDYTYVSAKKPETAVFSLVVPETRSIYWSQSYSDQIPGLLLDEDLQH 389

Query: 356 FVLDESLVLAFLTAS-----------NQKLVASCSQTRPKLPSIYTGNERAILLFLFFES 404
           FVLDE + LAF+ AS           ++KL +SCS   P+   IY GNERAI+ FL FE 
Sbjct: 390 FVLDERIALAFVAASSSGNPFRCRSKHEKLSSSCSFAEPEHLDIYIGNERAIIWFLLFEF 449

Query: 405 VVLLVLAVLVRFCCIFWRKKKLQGQHLGNFLEKRRSLQLKKKAFDRSITELE-----KKV 459
           V++++ A LVRFC IFW+KKKLQ +    FL+KRR L  K +  D++IT L+      + 
Sbjct: 450 VIMVLFAALVRFCFIFWKKKKLQDRPFSTFLDKRRLLHRKSREIDKTITRLQNESTANES 509

Query: 460 AEDAVANEVIKK--------SVVCLGRDEAAASSESKSFP-PVYDAKSRSYSFQGAKKES 510
           A D + + + K+        S   LGRD   + S+ K +  P+Y   SRS+S++  + ES
Sbjct: 510 AVDKIGDLIQKRENVKRKLSSTYSLGRDIDESKSKLKDYVLPLYGGSSRSFSYRNRENES 569

Query: 511 VTIFHTLSATSSAESSSERETSWVSEDKDQSTAKAKAKAKAKAPIKAE-SSSDGDGI 566
           +TIF T S  SS+E S   E      D +        K K K    +E SS+DGDGI
Sbjct: 570 ITIFQTPSDESSSEESYRDEHYDDVADDEHDEDDLDRKQKGKLLAHSEGSSNDGDGI 626

Required for micropylar pollen tube guidance. Plays a role during early embryo patterning.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	626
224079888	674	predicted protein [Populus trichocarpa]	0.966	0.897	0.536	1e-178
359488399	647	PREDICTED: uncharacterized protein LOC10	0.867	0.839	0.566	1e-178
356551076	582	PREDICTED: uncharacterized protein LOC10	0.809	0.871	0.544	1e-159
356554679	551	PREDICTED: uncharacterized protein LOC10	0.787	0.894	0.513	1e-144
298204384	1165	unnamed protein product [Vitis vinifera]	0.698	0.375	0.560	1e-144
255570021	579	conserved hypothetical protein [Ricinus	0.706	0.763	0.547	1e-143
358346601	570	hypothetical protein MTR_082s0039 [Medic	0.747	0.821	0.499	1e-130
358346856	543	hypothetical protein MTR_087s0018, parti	0.690	0.795	0.497	1e-125
357130443	703	PREDICTED: uncharacterized protein LOC10	0.921	0.820	0.389	1e-119
297807631	640	hypothetical protein ARALYDRAFT_488440 [	0.830	0.812	0.426	1e-118

>gi|224079888|ref|XP_002305959.1| predicted protein [Populus trichocarpa] gi|222848923|gb|EEE86470.1| predicted protein [Populus trichocarpa]

 Score =  630 bits (1626), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 361/673 (53%), Positives = 452/673 (67%), Gaps = 68/673 (10%)

Query: 16  FPFLTFAS-FSSSAKVPYR----RSAFRLSKPLIGEDGKIYACSEKTLFAFESNGTIAWS 70
           F  L  AS F+ S   P      R+  RLS+PLIGEDG+IY CSEKTL+AFESNG+IAW+
Sbjct: 8   FMLLVIASVFTESQNYPREGPSVRTDLRLSRPLIGEDGRIYICSEKTLYAFESNGSIAWT 67

Query: 71  LDLDFTCNIGTAPVHGGTGEVYIVAENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAI 130
             L + CN   APVHG  G++Y+VAE+RVL+++   + +S  A +VF+G   G+ G G I
Sbjct: 68  SYLSYACNASMAPVHGTVGKLYLVAESRVLRINFSDVRSSPPAVEVFFGPEKGQAGAGDI 127

Query: 131 AGIAVSTSSSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVP 190
            G+A ST SSSV+IN+K R LFA+  HG+L WSAG VL Q GY  GC K   DC F+S P
Sbjct: 128 IGLAASTLSSSVFINIKNRGLFAYEMHGKLHWSAGAVLYQYGYSLGCRKGVKDCSFSSSP 187

Query: 191 VIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRAL 250
           V+D+CE S+YISN  GELYSLS  SP+FNW+QDLSSFDK FT+TPGNNG LYVT+P  +L
Sbjct: 188 VVDRCEASLYISNNAGELYSLSLRSPHFNWVQDLSSFDKNFTVTPGNNGRLYVTVPPLSL 247

Query: 251 VLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPSGVLNKFSKSD 310
           VL LD   GNILW  S+GPLGSAE  PVVDSNGW+S+GSLDG LYS SP+G L K+SK+ 
Sbjct: 248 VLTLDVLKGNILWQTSIGPLGSAECEPVVDSNGWVSIGSLDGFLYSISPTGALKKYSKAS 307

Query: 311 TSDSVIQSSPYW------------------FHLLGPSIGL-----KAILCLMVV------ 341
             D VIQ SP+                    H +G S  +     K +L  M+V      
Sbjct: 308 EQDYVIQVSPHLDCSGNAVYMSQTEMEGKVVHTVGESTCVSAMKPKGVLFTMLVPATGVI 367

Query: 342 -------GQFSSLLSKSDLQHFVLDESLVLAFLTASNQKLVASCSQTRPKLPSIYTGNER 394
                  G+ SS+LS+SDL++FVLDE L+L+F+ AS   +V +    +P LP     NER
Sbjct: 368 HWSESYPGKVSSMLSQSDLKNFVLDEGLLLSFIAASTFVIVNAAGTGKP-LPCRSKRNER 426

Query: 395 AILLFLFFESVVLLVLAVLVRFCCIFWRKKKLQGQHLGNFLEKRRSLQLKKKAFDRSITE 454
            ILLFL  ES++L++LA LVRFCCIFW KKKLQ Q LG+FLEKRRSLQLKKK FDR+IT+
Sbjct: 427 TILLFLLLESMLLVILAGLVRFCCIFWTKKKLQDQGLGSFLEKRRSLQLKKKEFDRTITQ 486

Query: 455 LEKKVAEDAVANEVIKK----------------SVVCLGRDEAAASSESKSFPPVYDAKS 498
           LEKK A +AVA+EVI++                +   LGRD     SE  S  PVYD KS
Sbjct: 487 LEKKAANEAVAHEVIEEIGDLVRERESISRKLSTTYSLGRDGKGLRSE--SLLPVYDGKS 544

Query: 499 RSYSFQGAKKESVTIFHTLSATSSAESSSERETSWVSEDKDQSTAKAKAKAKAKAPIKAE 558
           RSYSFQ A+KESVTIFHTLS TSS ESS E+++     +++QS+  AK K KA+AP++ E
Sbjct: 545 RSYSFQSARKESVTIFHTLSNTSSGESSKEKDSDRDFHEENQSS--AKGKGKARAPVETE 602

Query: 559 SSSDGDGIMDKEYRRSPSEPASSSRGFINPLLLKQ----EKLQDKGEVVESMSSSIRSM- 613
           SSSD D I +K Y RS SEP SSS+G+ NP  ++Q    E+L D+G+VVES + S R+  
Sbjct: 603 SSSD-DDIFEKGYHRSSSEPTSSSKGYANPFFMEQELTEEELNDEGKVVESATGSGRTRS 661

Query: 614 LLLKRRRTLSSTN 626
           + LKRR+TLSSTN
Sbjct: 662 MWLKRRKTLSSTN 674

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488399|ref|XP_002279543.2| PREDICTED: uncharacterized protein LOC100253124 [Vitis vinifera]

 Score =  630 bits (1624), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 346/611 (56%), Positives = 423/611 (69%), Gaps = 68/611 (11%)

Query: 25  SSSAKVPYRRSAFRLSKPLIGEDGKIYACSEKTLFAFESNGTIAWSLDLDFTCNIGTAPV 84
           S SA+ P +++A RLS PLIG DG++Y CSE+ LFAFE NG+I+W++ L++TCN+G APV
Sbjct: 8   SVSAQGPSQKTACRLSNPLIGYDGRVYTCSERNLFAFERNGSISWTVPLNYTCNVGIAPV 67

Query: 85  HGGTGEVYIVAENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYI 144
           HG  G++Y+VAENRV+K++   IGT+ESA +VF+G   G+  +G I G++VSTSSSSV+I
Sbjct: 68  HGDRGKIYLVAENRVMKINPSNIGTTESAAEVFFGPEPGQEVSGEIIGLSVSTSSSSVFI 127

Query: 145 NVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT 204
           NVK R LFA+   G L WSAGPVL + GYRQGC +   DCYF+S+PVID+CE SIY+SNT
Sbjct: 128 NVKNRGLFAYSLDGHLRWSAGPVLYRFGYRQGCKQNVKDCYFSSIPVIDRCEASIYMSNT 187

Query: 205 QGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWH 264
           +GE+YSLS  SP F WIQD SSFDK FT+TPGNNG LYVT+PVR LVLALD ++GNILW 
Sbjct: 188 EGEIYSLSVRSPQFKWIQDFSSFDKVFTITPGNNGCLYVTVPVRVLVLALDVTTGNILWQ 247

Query: 265 KSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPSGVLNKFSKSDTSDSVIQSSPYW-- 322
           ++ GPL + E APVVDSNGWIS+GSLDG LYSFSP+G L KF ++   DSV+Q SP    
Sbjct: 248 RNTGPLSTTECAPVVDSNGWISIGSLDGFLYSFSPTGSLKKFPRAAVLDSVVQVSPLLDC 307

Query: 323 -----------------------------------FHLLGPSIGLKAILCLMVVGQFSSL 347
                                              F +L PS G          G+FSSL
Sbjct: 308 SGYAVYISQTEMEEKISHVTGEYTCISALKPRNVVFTMLAPSTG-STYWSESYPGKFSSL 366

Query: 348 LSKSDLQHFVLDESLVLAFLTASN-----------QKLVASCSQTRPKLPSIYTGNERAI 396
           L ++DLQ+FVLDES++LAF+ AS            QKL ASCS+ RPK  SIYTGNERAI
Sbjct: 367 LVETDLQNFVLDESVLLAFVAASKIGNPLPCRTTYQKLAASCSEARPKYLSIYTGNERAI 426

Query: 397 LLFLFFESVVLLVLAVLVRFCCIFWRKKKLQGQHLGNFLEKRRSLQLKKKAFDRSITELE 456
           LLFL FES VL++LA LVRFCCIFWRKKKLQGQ LG FLEKR SL+L+KK FDR+ITELE
Sbjct: 427 LLFLLFESAVLVLLAGLVRFCCIFWRKKKLQGQDLGKFLEKRHSLRLQKKEFDRTITELE 486

Query: 457 KKVAEDAVANEVIKK----------------SVVCLGRDEAAASSESKSFPPVYDAKSRS 500
           KK AE+A  + V++K                +   LGRD        K+  P+YD K+RS
Sbjct: 487 KKAAEEASTSAVLEKLGDLVQEREGIQRKLSTTYSLGRD--VTGLHRKTLLPLYDGKTRS 544

Query: 501 YSFQGAKKESVTIFHTLSATSSAESSSERETSWVSEDKDQSTAKAKAKAKAKAPIKAESS 560
           YSFQGAKKESVTIFHT+S  SS ES S+RE SW S +  +S AKAKAKAKAKAPI   SS
Sbjct: 545 YSFQGAKKESVTIFHTVSDASSGESYSDREISWHSFEDKESAAKAKAKAKAKAPIADGSS 604

Query: 561 SDGDGIMDKEY 571
           SD D I  ++Y
Sbjct: 605 SD-DRICKEDY 614

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551076|ref|XP_003543904.1| PREDICTED: uncharacterized protein LOC100817912 [Glycine max]

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 293/538 (54%), Positives = 374/538 (69%), Gaps = 31/538 (5%)

Query: 19  LTFASFSSSAKVPYRRSAFRLSKPLIGEDGKIYACSEKTLFAFESNGTIAWSLDLDFTCN 78
           L   +FSSS    Y      LSKPL+ +DG+IY CS+   FAFESNGTIAW++ LD+ CN
Sbjct: 46  LFVGTFSSSFISAYHL----LSKPLLRDDGRIYVCSQDNFFAFESNGTIAWTMHLDYKCN 101

Query: 79  IGTAPVHGGTGEVYIVAENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTS 138
           +GTAPVHGG G++Y+V +NR+L +    I TSE  ++VF+G G G+     I G++VST 
Sbjct: 102 LGTAPVHGGHGKIYLVVDNRILVISYGNIATSEPESKVFFGPGPGRVAEAEIIGLSVSTL 161

Query: 139 SSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGS 198
            S++YINVK R LFA+ +HG+L+WS GPVL Q GYRQGC K   DCYF SVPV+DQCEGS
Sbjct: 162 GSTIYINVKNRGLFAYHSHGRLIWSVGPVLYQFGYRQGCRKNLTDCYFASVPVLDQCEGS 221

Query: 199 IYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSS 258
           IYISNT+GELY LS  S YF WIQD SS DK FT+TPGNNG+L+VT P +ALVLALD  S
Sbjct: 222 IYISNTEGELYCLSVRSRYFRWIQDFSSLDKNFTITPGNNGHLFVTFPAKALVLALDVFS 281

Query: 259 GNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPSGVLNKFSKSDTSDSVIQS 318
           GN+LW +S+GPL   + APVVDSNGWIS+GSLDG LYSFSP+GVL KFS+ +  +S+IQ 
Sbjct: 282 GNVLWQRSIGPLSKVDSAPVVDSNGWISIGSLDGFLYSFSPTGVLKKFSRMNAENSMIQV 341

Query: 319 SPYW----FHLLGPSIGLKAILCLMVVGQF---SSLLSKSDLQHFVLDESLVLAFLTA-S 370
            P+     F +    I ++  +    +G++   S++  K+ L   ++  +  + +  +  
Sbjct: 342 GPFLDCSGFAIYSSQIEMEGKVS-RTIGEYTVVSAIRPKAALFTVLVPATGSIYWSESYP 400

Query: 371 NQKLVASCSQTRPKLPSIYTGNERAILLFLFFESVVLLVLAVLVRFCCIFWRKKKLQGQH 430
            QKL +SCSQ R KL SIYTGNERAI+LFL FES +LLVL  LVRFCC FW K+KL+ Q 
Sbjct: 401 GQKLASSCSQERTKLVSIYTGNERAIVLFLLFESALLLVLIGLVRFCCTFWAKEKLKDQG 460

Query: 431 LGNFLEKRRSLQLKKKAFDRSITELEKKVAEDAVANEVIKK----------------SVV 474
           LG+FL+KR SL+LKKKA DR+ITELE+KVAE+ V NEV +K                +  
Sbjct: 461 LGSFLDKRCSLRLKKKALDRTITELEQKVAEETVDNEVFEKLGDIVRERECIERKLSTTY 520

Query: 475 CLGRDEAAASSESKSFPPVYDAKSRSYSFQGAKKESVTIFHTLSATSSAESSSERETS 532
            LGRD     S  KS  PV   K++SYSFQ AK+++VT+F+TLS TSS E SSE ET+
Sbjct: 521 SLGRDR--THSRPKSVLPVQMGKAKSYSFQDAKQKNVTMFNTLSDTSSGEISSEGETN 576

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554679|ref|XP_003545671.1| PREDICTED: uncharacterized protein LOC100818993 [Glycine max]

 Score =  520 bits (1339), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 294/572 (51%), Positives = 365/572 (63%), Gaps = 79/572 (13%)

Query: 20  TFASFSSSAKVPYRRSAFRLSKPLIGEDGKIYACSEKTLFAFESNGTIAWSLDLDFTCNI 79
           TF+SF S+  +        LSKPL+ +DG+IY CS    FAFESNGTIAW + LD+ CN+
Sbjct: 16  TFSSFVSAYHL--------LSKPLLRDDGRIYVCSHDNFFAFESNGTIAWIMHLDYKCNL 67

Query: 80  GTAPVHGGTGEVYIVAENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSS 139
           GTAPVHGG G++Y+VA+NR+L +    IGTSE   +VF+G G G      I G++VST  
Sbjct: 68  GTAPVHGGHGKIYLVADNRILVISYGNIGTSEPEAEVFFGPGPGHVAEAEIIGLSVSTLG 127

Query: 140 SSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSI 199
           S++YINVK R LFA+ + G LLWS  PVL Q GYRQGC K   +CYF SVP++D CEGSI
Sbjct: 128 STIYINVKNRGLFAYQSRGHLLWSVEPVLYQFGYRQGCRKNLTNCYFASVPLLDHCEGSI 187

Query: 200 YISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSG 259
           YISNT+GELY LS  S YF WIQD SS DK FT+T GNNG+LYVT+P +ALVLALD  SG
Sbjct: 188 YISNTEGELYCLSVRSRYFRWIQDFSSLDKNFTITLGNNGHLYVTVPAKALVLALDVFSG 247

Query: 260 NILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPSGVLNKFSKSDTSDSVIQSS 319
           N+LW +S+GPL   + APVVDSNGWIS+GSLDG LYSFSP+GVL KFS+ +  +S+IQ  
Sbjct: 248 NVLWQRSIGPLSKVDSAPVVDSNGWISIGSLDGFLYSFSPTGVLKKFSRMNAENSIIQVG 307

Query: 320 PYW------------------FHLLGP-----SIGLKAILCLMVV-------------GQ 343
           P+                    H +G      +I  KA L  M+V             G 
Sbjct: 308 PFLDCSGFAIYSSQIEMEGKISHTIGEYTVVSAIQPKAALFTMLVPATGSIYWSESYPGH 367

Query: 344 FSSLLSKSDLQHFVLDESLVLAFLTASNQKLVASCSQTRPKLPSIYTGNERAILLFLFFE 403
            S+L SKSDL  FV++E ++LAFL AS+QKL +SCSQ R KL S+YTGNERAI+LFL FE
Sbjct: 368 VSTLFSKSDLSQFVMNEEILLAFLAASSQKLASSCSQERTKLVSVYTGNERAIVLFLLFE 427

Query: 404 SVVLLVLAVLVRFCCIFWRKKKLQGQHLGNFLEKRRSLQLKKKAFDRSITELEKKVAEDA 463
           S +LL+L  LVRFCC FW K+KL+ Q LG+FL+ R     +   +               
Sbjct: 428 SALLLILIGLVRFCCTFWAKEKLKDQGLGSFLDNRYGALFRSTNYS-------------- 473

Query: 464 VANEVIKKSVVCLGRDEAAASSESKSFPPVYDAKSRSYSFQGAKKESVTIFHTLSATSSA 523
                       LGRD   A S  K   PV   K+ +YSFQ AK++++T+ HTLS TSS+
Sbjct: 474 ------------LGRD--TAHSRPKPVLPVQMGKT-NYSFQYAKQKNMTMSHTLSDTSSS 518

Query: 524 ESSSERETSWVSEDKDQSTAKAKAKAKAKAPI 555
           ESSSE ETS + ED D ST     K KAK PI
Sbjct: 519 ESSSEGETSML-EDMDSST-----KGKAKTPI 544

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204384|emb|CBI16864.3| unnamed protein product [Vitis vinifera]

 Score =  520 bits (1338), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 283/505 (56%), Positives = 340/505 (67%), Gaps = 68/505 (13%)

Query: 100 LKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTHGQ 159
           +K++   IGT+ESA +VF+G   G+  +G I G++VSTSSSSV+INVK R LFA+   G 
Sbjct: 1   MKINPSNIGTTESAAEVFFGPEPGQEVSGEIIGLSVSTSSSSVFINVKNRGLFAYSLDGH 60

Query: 160 LLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFN 219
           L WSAGPVL + GYRQGC +   DCYF+S+PVID+CE SIY+SNT+GE+YSLS  SP F 
Sbjct: 61  LRWSAGPVLYRFGYRQGCKQNVKDCYFSSIPVIDRCEASIYMSNTEGEIYSLSVRSPQFK 120

Query: 220 WIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVV 279
           WIQD SSFDK FT+TPGNNG LYVT+PVR LVLALD ++GNILW ++ GPL + E APVV
Sbjct: 121 WIQDFSSFDKVFTITPGNNGCLYVTVPVRVLVLALDVTTGNILWQRNTGPLSTTECAPVV 180

Query: 280 DSNGWISVGSLDGLLYSFSPSGVLNKFSKSDTSDSVIQSSPYW----------------- 322
           DSNGWIS+GSLDG LYSFSP+G L KF ++   DSV+Q SP                   
Sbjct: 181 DSNGWISIGSLDGFLYSFSPTGSLKKFPRAAVLDSVVQVSPLLDCSGYAVYISQTEMEEK 240

Query: 323 --------------------FHLLGPSIGLKAILCLMVVGQFSSLLSKSDLQHFVLDESL 362
                               F +L PS G          G+FSSLL ++DLQ+FVLDES+
Sbjct: 241 ISHVTGEYTCISALKPRNVVFTMLAPSTG-STYWSESYPGKFSSLLVETDLQNFVLDESV 299

Query: 363 VLAFLTASN-----------QKLVASCSQTRPKLPSIYTGNERAILLFLFFESVVLLVLA 411
           +LAF+ AS            QKL ASCS+ RPK  SIYTGNERAILLFL FES VL++LA
Sbjct: 300 LLAFVAASKIGNPLPCRTTYQKLAASCSEARPKYLSIYTGNERAILLFLLFESAVLVLLA 359

Query: 412 VLVRFCCIFWRKKKLQGQHLGNFLEKRRSLQLKKKAFDRSITELEKKVAEDAVANEVIKK 471
            LVRFCCIFWRKKKLQGQ LG FLEKR SL+L+KK FDR+ITELEKK AE+A  + V++K
Sbjct: 360 GLVRFCCIFWRKKKLQGQDLGKFLEKRHSLRLQKKEFDRTITELEKKAAEEASTSAVLEK 419

Query: 472 ----------------SVVCLGRDEAAASSESKSFPPVYDAKSRSYSFQGAKKESVTIFH 515
                           +   LGRD        K+  P+YD K+RSYSFQGAKKESVTIFH
Sbjct: 420 LGDLVQEREGIQRKLSTTYSLGRD--VTGLHRKTLLPLYDGKTRSYSFQGAKKESVTIFH 477

Query: 516 TLSATSSAESSSERETSWVS-EDKD 539
           T+S  SS ES S+RE SW S EDK+
Sbjct: 478 TVSDASSGESYSDREISWHSFEDKE 502

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570021|ref|XP_002525973.1| conserved hypothetical protein [Ricinus communis] gi|223534705|gb|EEF36397.1| conserved hypothetical protein [Ricinus communis]

 Score =  516 bits (1329), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 271/495 (54%), Positives = 337/495 (68%), Gaps = 53/495 (10%)

Query: 21  FASFSSSAKVPY-------RRSAFRLSKPLIGED-GKIYACSEKTLFAFESNGTIAWSLD 72
           +A   S+A  PY        R++ RLSKPLIG+D G+IY CS++  FAFESNG+IAWSL 
Sbjct: 17  YADSISTANYPYALGQLGSTRTSSRLSKPLIGDDDGRIYTCSDRIFFAFESNGSIAWSLH 76

Query: 73  LDFTCNIGTAPVHGGTGEVYIVAENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAG 132
           L +TCN   APVHGG G++Y++AENRVL ++LL + TS   ++VF+G   G+ G G I G
Sbjct: 77  LAYTCNSSMAPVHGGRGKIYLIAENRVLNINLLNLRTSTPTSEVFFGPEKGQEGAGEIIG 136

Query: 133 IAVSTSSSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVI 192
           +AVST SSSV+IN+K R LFA+M  GQLLWSAGPVL Q GYR GC K   DCYF SVP+I
Sbjct: 137 LAVSTLSSSVFINIKNRGLFAYMMRGQLLWSAGPVLSQFGYRLGCRKGISDCYFNSVPMI 196

Query: 193 DQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVL 252
           D+CE S+YISNT GE+YSLS HSP+FNW+QDLSSFD+ FTLTPGNNG LYVT+P +A+VL
Sbjct: 197 DRCEASLYISNTAGEVYSLSLHSPHFNWVQDLSSFDRDFTLTPGNNGLLYVTVPTKAIVL 256

Query: 253 ALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPSGVLNKFSKSDTS 312
           AL  S G+ILW K++GP    +  PVVDSNGWIS+GSLDG LYS SP+G + KF+K+   
Sbjct: 257 ALGVSMGDILWQKNIGPFSVVDCTPVVDSNGWISIGSLDGFLYSISPTGEVKKFTKASEL 316

Query: 313 DSVIQSSPYW------------------FHLLG------PSIGLKAILCLMV-------- 340
           + VIQ SP+                    H+LG        I    +  LMV        
Sbjct: 317 NYVIQVSPFLDCSGYAVYISQAEMVGKVSHILGEYNYVSAMIPKGVVFTLMVPTTGAVYW 376

Query: 341 ----VGQFSSLLSKSDLQHFVLDESLVLAFLTASNQKLVASCSQTRPKLPSIYTGNERAI 396
                GQFSS LS+SDLQHF  DE ++LAF+TA         S+T   LP     NER I
Sbjct: 377 SESYPGQFSSSLSQSDLQHFAFDEGILLAFITA---------SRTGNTLPCRSKSNERTI 427

Query: 397 LLFLFFESVVLLVLAVLVRFCCIFWRKKKLQGQHLGNFLEKRRSLQLKKKAFDRSITELE 456
           +LFL +ES+VL+VLA LVRFCCIFW KKKLQ Q L  FLE+RRSLQ +KK   R+ITELE
Sbjct: 428 MLFLLYESIVLVVLAGLVRFCCIFWSKKKLQRQDLAVFLERRRSLQRQKKELSRTITELE 487

Query: 457 KKVAEDAVANEVIKK 471
           +K AE+AV N+ +++
Sbjct: 488 QKAAEEAVGNQAMEE 502

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358346601|ref|XP_003637355.1| hypothetical protein MTR_082s0039 [Medicago truncatula] gi|355503290|gb|AES84493.1| hypothetical protein MTR_082s0039 [Medicago truncatula]

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 271/543 (49%), Positives = 346/543 (63%), Gaps = 75/543 (13%)

Query: 90  EVYIVAENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGR 149
           ++Y+VAENR+LK+D   IG SE A ++F+G   G+     I G++VST SS+V+INVK R
Sbjct: 31  DIYLVAENRILKIDYGNIGISEPAVELFFGPEPGQKAETKIIGLSVSTLSSTVFINVKNR 90

Query: 150 ALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELY 209
            LFA+++HG+LLWS GP L Q GYRQGC K   DCYF+SVPV+DQCE SIYI+NT+GELY
Sbjct: 91  GLFAYLSHGRLLWSLGPALYQFGYRQGCRKNLTDCYFSSVPVLDQCEASIYIANTEGELY 150

Query: 210 SLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGP 269
            LS     F WIQD SS DK+FT+TPGNNG+LYVT+P RAL+LALD  +GNILW  SVGP
Sbjct: 151 CLSVRGRDFRWIQDFSSLDKSFTITPGNNGHLYVTVPTRALILALDVFTGNILWQGSVGP 210

Query: 270 LGSAEYAPVVDSNGWISVGSLDGLLYSFSPSGVLNKFSKSDTSDSVIQSSPYW------- 322
           L   + APVVDSNGWIS+GSLDG LYSFSP+G+L KFS+ +T +S+ Q  P+        
Sbjct: 211 LSKIDCAPVVDSNGWISIGSLDGFLYSFSPTGILKKFSRKNTENSIAQVGPFLDCSGFAV 270

Query: 323 -----------FHLLGP-----SIGLKAILCLMVV-------------GQFSSLLSKSDL 353
                       H +G      +I  KA +  M+V             G+ S+LLSKSDL
Sbjct: 271 YSSQIEMEGKVSHGIGEYTVVSAIRPKAAIFTMLVPATGSIYWSEGYPGKLSTLLSKSDL 330

Query: 354 QHFVLDESLVLAFLTASN-----------QKLVASCSQTRPKLPSIYTGNERAILLFLFF 402
             FV++E ++L F+ AS            QKL +SCSQ R KL +IY+GNER I  FL F
Sbjct: 331 SQFVVNEEILLTFIAASKVDTPLQCRTTGQKLASSCSQARNKLVNIYSGNERTIEFFLLF 390

Query: 403 ESVVLLVLAVLVRFCCIFWRKKKLQGQHLGNFLEKRRSLQLKKKAFDRSITELEKKVAED 462
           ES +L++L  LVRFCC FW K+KLQ Q LG+FL+KR SLQL+KKA  ++I+ELEKK AE+
Sbjct: 391 ESFLLVLLIGLVRFCCTFWAKRKLQDQGLGSFLDKRCSLQLQKKALVKTISELEKKSAEE 450

Query: 463 AVANEVIKK----------------SVVCLGRDEAAASSESKSFPPVYDAKSRSYSFQGA 506
           +V NEV +K                +   LGRD    +S+SKS  P+   K +SYSFQGA
Sbjct: 451 SVDNEVYEKLGDTVRKKENIERKLSTTYSLGRDR--TNSKSKSMLPLQIGKRKSYSFQGA 508

Query: 507 KKESVTIFHTLSATSSAESSSERETSWVSEDKDQSTAKAKAKAKAKAP---IKAESSSDG 563
           KK+ + +F TLS  SS ESS E E   V          + AK K K P   + + SS+D 
Sbjct: 509 KKQKLKMFDTLSDASS-ESSIEGERDMV------EVLDSSAKEKGKTPMVEVTSTSSNDE 561

Query: 564 DGI 566
           D I
Sbjct: 562 DFI 564

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358346856|ref|XP_003637480.1| hypothetical protein MTR_087s0018, partial [Medicago truncatula] gi|355503415|gb|AES84618.1| hypothetical protein MTR_087s0018, partial [Medicago truncatula]

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 250/503 (49%), Positives = 322/503 (64%), Gaps = 71/503 (14%)

Query: 39  LSKPLIGEDGKIYACSEKTLFAFESNGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVAENR 98
           LSKPLIG+DG+IY CS+KT  +FE+NGTIAWS+ +D+ CN+G APVH G G++Y+VAENR
Sbjct: 30  LSKPLIGDDGRIYVCSDKTFLSFETNGTIAWSIHVDYKCNVGLAPVHAGLGKIYLVAENR 89

Query: 99  VLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTHG 158
           +LK+D   IG SE A ++F+G   G+     I G++VST SS+V+INVK R LFA+++HG
Sbjct: 90  ILKIDYGNIGISEPAVELFFGPEPGQKAETKIIGLSVSTLSSTVFINVKNRGLFAYLSHG 149

Query: 159 QLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYF 218
           +LLWS GP L Q GYRQGC K   DCYF+SVPV+DQCE SIYI+NT+GELY LS     F
Sbjct: 150 RLLWSLGPALYQFGYRQGCRKNLTDCYFSSVPVLDQCEASIYIANTEGELYCLSVRGRDF 209

Query: 219 NWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPV 278
            WIQD SS DK+FT+TPGNNG+LYVT+P RAL+LALD  +GNILW  SVGPL   + APV
Sbjct: 210 RWIQDFSSLDKSFTITPGNNGHLYVTVPTRALILALDVFTGNILWQGSVGPLSKIDCAPV 269

Query: 279 VDSN---------GWISVGSLDGLLYSFSPSGVLNKFSKSDTSDSVIQSSPYW------- 322
           VDSN         G++S   +D  ++   P    N   K  T +S+ Q  P+        
Sbjct: 270 VDSNGIPISLDYDGYLSAHWMDSFIHFRQPEYSRNSQEKI-TENSIAQVGPFLDCSGFAV 328

Query: 323 ------------------------------FHLLGPSIG----LKAILCLMVVGQF---- 344
                                         F +L P+ G     K IL  +++  F    
Sbjct: 329 YSSQIEMEGKVSHGIGEYTVVSAIRPKAAIFTMLVPATGSIYWSKDILVHILIFGFNDRL 388

Query: 345 -----SSLLSKSDLQHFVLDESLVLAFLTASN-----------QKLVASCSQTRPKLPSI 388
                S+LLSKSDL  FV++E ++L F+ AS            QKL +SCSQ R KL +I
Sbjct: 389 LSCKLSTLLSKSDLSQFVVNEEILLTFIAASKVDTPLQCRTTGQKLASSCSQARNKLVNI 448

Query: 389 YTGNERAILLFLFFESVVLLVLAVLVRFCCIFWRKKKLQGQHLGNFLEKRRSLQLKKKAF 448
           Y+GNER I  FL FES +L++L  LVRFCC FW K+KLQ Q LG+FL+KR SLQL+KKA 
Sbjct: 449 YSGNERTIEFFLLFESFLLVLLIGLVRFCCTFWAKRKLQDQGLGSFLDKRCSLQLQKKAL 508

Query: 449 DRSITELEKKVAEDAVANEVIKK 471
            ++I+ELEKK AE++V NEV +K
Sbjct: 509 VKTISELEKKSAEESVDNEVYEK 531

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357130443|ref|XP_003566858.1| PREDICTED: uncharacterized protein LOC100834401 [Brachypodium distachyon]

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 260/667 (38%), Positives = 375/667 (56%), Gaps = 90/667 (13%)

Query: 39  LSKPLIGEDGKIYACSEKTLFAFESNGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVAENR 98
           LS PLIG  G+I ACS K L AFE NG+IAW + L + C    AP+     ++Y+VAE++
Sbjct: 48  LSPPLIGHGGRIVACSGKNLLAFEPNGSIAWIVPLGYNCKQDVAPI-TEREKIYLVAEDK 106

Query: 99  VLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAF-MTH 157
           V+K+    + T + AT+VF+   S  G +  + G++ ++S SS+++ +  R LF+F + +
Sbjct: 107 VIKITPRNLRTGDPATEVFFSYTSTPGRSEELIGLSTASSYSSLFLTIMNRGLFSFSLRN 166

Query: 158 GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPY 217
           GQLLWSAGPVLD+ GYR GC      CYF S PV+DQCEG++YISN +G+LYS+  HS  
Sbjct: 167 GQLLWSAGPVLDRFGYRIGCKGNISGCYFNSAPVVDQCEGTLYISNNEGQLYSMYIHSRK 226

Query: 218 FNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAP 277
           + WIQDLSS DK  T+ PGNNG LYV +P +++V+  D  +G+I W +SVGPL + +  P
Sbjct: 227 YRWIQDLSSIDKVMTIAPGNNGRLYVVLPRKSIVMGFDVLTGHISWQQSVGPLSNEKVLP 286

Query: 278 VVDSNGWISVGSLDGLLYSFSPSGVLNKFSKSDTSDSVIQSSPYW--------------- 322
            VDSNGWIS+GSLDG LYS SP G + KF +  + +SVI +SP                 
Sbjct: 287 AVDSNGWISIGSLDGTLYSVSPDGDIRKFLQRTSPNSVIHASPVLDCSGFSVYISQTIME 346

Query: 323 ----------------------FHLLGPSIGLKAILCLMVVGQFSSLLSKSDLQHFVLDE 360
                                 F LL P+ G          G+ + LLS SDL +F LDE
Sbjct: 347 AKSSQTIGDYTYVSAMKPSSILFTLLAPATG-TTYWTEKYPGELADLLSSSDLNYFTLDE 405

Query: 361 SLVLAFLTAS----------NQKLVASCSQTRPKLPSIYTGNERAILLFLFFESVVLLVL 410
           +++L  L+A           ++K V+   +++PK      G+    LL  FF+ +V+++ 
Sbjct: 406 TILLTALSAGSTNWQHHPMLHEKYVSFLEKSKPKFVHGDPGDHNHALLLFFFQLIVIVIQ 465

Query: 411 AVLVRFCCIFWRKKKLQGQHLGNFLEKRRSLQLKKKAFDRSITELEKKVAEDAVANEVIK 470
           +V+VRFCCIFWRKKKLQ   L  FLEKRRSL  K++   + I+ELE+K  EDA +NE+++
Sbjct: 466 SVIVRFCCIFWRKKKLQHNGLQKFLEKRRSLHSKRRILGKIISELEQKAVEDASSNEILE 525

Query: 471 K----------------SVVCLGRDEAAASSESKSFPPVYDAKSRSYSFQGAKKESVTIF 514
           +                +   LGRD       S S  P+Y+ K +S+SF GA++ES+TIF
Sbjct: 526 QLGEMVKAKEGVERKLYTSYSLGRDVLGLRQRS-SILPLYNGKHKSHSFHGAQRESITIF 584

Query: 515 HTLSATSSAESSS--------ERETSWVSEDKDQSTAKAKAKAKAKAPIKAESSSDGDGI 566
           +TLS TSS+E  +           +    ED +  T +  +  +A     A+ +    G 
Sbjct: 585 NTLSNTSSSEDRTTSSYSSGSGSCSGSSCEDMESDT-RFNSAGEAGPSNTADVAVGAQG- 642

Query: 567 MDKEYRRSPSEPASSSRGFINPLLLK----QEKLQDKGE-VVESM--SSSIRSMLLLKRR 619
                 + P++   S R F NPL ++     E L  + E ++E+M   S+    + LKRR
Sbjct: 643 ------KCPADAEPSYRVFTNPLYVQGESSGESLSRRQEFLMETMHQGSAPTKRMWLKRR 696

Query: 620 RTLSSTN 626
           RTLSSTN
Sbjct: 697 RTLSSTN 703

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807631|ref|XP_002871699.1| hypothetical protein ARALYDRAFT_488440 [Arabidopsis lyrata subsp. lyrata] gi|297317536|gb|EFH47958.1| hypothetical protein ARALYDRAFT_488440 [Arabidopsis lyrata subsp. lyrata]

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 253/593 (42%), Positives = 342/593 (57%), Gaps = 73/593 (12%)

Query: 39  LSKPLIGEDGKIYACSEKTLFAFESNGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVAENR 98
           LSK LIG+DG++YACS+   F+FESNG+IAWS+ ++F CN   +PV+ G  ++ ++AENR
Sbjct: 37  LSKTLIGDDGRVYACSDNDFFSFESNGSIAWSVHMNFKCNTDFSPVYSGFKQMLVLAENR 96

Query: 99  VLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTHG 158
           +L+V   + GT +S  ++F+  G        I G AVS SS SVYI VK   L+A+    
Sbjct: 97  ILRVIFPRNGT-KSEPELFFDPGE------TILGFAVSISSYSVYITVKNHGLYAYNMFR 149

Query: 159 QLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYF 218
           Q LW A P +++ GYR GC K   +C F S PVID CEGSIYISN +GELYSLS    Y+
Sbjct: 150 QQLWIAEPKIERFGYRLGCRKDYDNCTFNSRPVIDSCEGSIYISNNEGELYSLSLRGTYY 209

Query: 219 NWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYA-P 277
            WIQD S  D+ FT+TPGNNG +YV  P+++LV ALD+ SG+ILW K+VGPL     + P
Sbjct: 210 QWIQDFSLVDRFFTVTPGNNGLVYVVFPMKSLVFALDSFSGDILWQKTVGPLAETSASDP 269

Query: 278 VVDSNGWISVGSLDGLLYSFSPSGVLNKFSKSDTSDSVIQSSP------YWFHLLGPSIG 331
           V+DSN W S+GSLDG LYSFS +G L+K  K+  +DSVIQ  P      Y  ++    + 
Sbjct: 270 VIDSNSWASIGSLDGTLYSFSRTGELHKIPKNAETDSVIQIEPLLDCSGYAVYVSQTKLE 329

Query: 332 LK------------------AILCLMV------------VGQFSSLLSKSDLQHFVLDES 361
            K                  A+  L+V              Q   LL   DLQHF+LDE 
Sbjct: 330 GKIDHVIEDYTYVSAKKPETAVFSLVVPETRSICWSQSYSDQILGLLLDEDLQHFLLDER 389

Query: 362 LVLAFLTAS-----------NQKLVASCSQTRPKLPSIYTGNERAILLFLFFESVVLLVL 410
           +VLAF+ AS           ++KL +SCS + P+   IY GNERAI+ FL FE V++++ 
Sbjct: 390 IVLAFVAASSSGNPFRCRSKHEKLSSSCSFSEPEHLDIYIGNERAIIWFLLFEFVIIVLF 449

Query: 411 AVLVRFCCIFWRKKKLQGQHLGNFLEKRRSLQLKKKAFDRSITELE----------KKVA 460
           A LVRFC IFW+KKKLQ +    FL+KRR L  K +  D++IT L+           K+ 
Sbjct: 450 AALVRFCFIFWKKKKLQDRPFSAFLDKRRLLHRKSRDIDKTITRLQSESTANESTVDKIG 509

Query: 461 EDAVANEVIKK---SVVCLGRDEAAASSESKSFP-PVYDAKSRSYSFQGAKKESVTIFHT 516
           +     E +++   S   LGRD   + S+ K +  P+Y   SRS+SFQ  + ESVTIF T
Sbjct: 510 DLIQERENVRRKLTSTYSLGRDIDESKSKLKDYVLPLYGGGSRSFSFQNRENESVTIFQT 569

Query: 517 LSATSSAESSSERETSWVSEDKDQSTAKAKAKAKAKAPIKAE---SSSDGDGI 566
               SS+E S  R+  +  +  D    +       K  + A    SS+DGDGI
Sbjct: 570 PRDESSSEESY-RDQHYDDDVADDEHDEDDLDRNQKGKLLAHSEGSSNDGDGI 621

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	626
TAIR|locus:2146122	641	GEX3 "AT5G16020" [Arabidopsis	0.476	0.464	0.482	2.5e-100
TAIR|locus:2142908	1040	AT5G35930 [Arabidopsis thalian	0.226	0.136	0.283	0.00064

TAIR|locus:2146122 GEX3 "AT5G16020" [Arabidopsis thaliana (taxid:3702)]

 Score = 732 (262.7 bits), Expect = 2.5e-100, Sum P(2) = 2.5e-100
 Identities = 148/307 (48%), Positives = 198/307 (64%)

Query:    16 FPFLTFASFSS-SAKVPYRRSAFRLSKPLIGEDGKIYACSEKTLFAFESNGTIAWSLDLD 74
             F F+ F+  S    +   ++S   LSK LIG+DG++YACS+   F+FESNG+IAWS+ ++
Sbjct:    19 FFFVFFSGVSQLQDQTATKKSVRILSKILIGDDGRVYACSDNDFFSFESNGSIAWSVHMN 78

Query:    75 FTCNIGTAPVHGGTGEVYIVAENRVLKVDLLKIGTSESATQVFYXXXXXXXXXXXXXXXX 134
             F CN   APV+ G  ++ ++AENR+L+V   + GT +S  ++F+                
Sbjct:    79 FKCNTDFAPVYSGFNQMLLLAENRILRVIFPRNGT-KSEPELFFDPGETILGFAVSV--- 134

Query:   135 XXXSSSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQ 194
                SSSSVYI VK   L+A+    Q LW A P +++ GYR GC K   +C F S PVID 
Sbjct:   135 ---SSSSVYITVKNHGLYAYNMFRQQLWIAEPKIERFGYRLGCRKDFDNCTFNSRPVIDS 191

Query:   195 CEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLAL 254
             CEGSIYISN +GELYSLS    Y+ WIQD S  D+ FT+TPGNNG +YV  P+++LV AL
Sbjct:   192 CEGSIYISNNEGELYSLSLRGTYYQWIQDFSLVDRFFTVTPGNNGLVYVVFPIKSLVFAL 251

Query:   255 DTSSGNILWHKSVGPLGSAEYA-PVVDSNGWISVGSLDGLLYSFSPSGVLNKFSKSDTSD 313
             D+ SG+ILW K++GPL     + PV+DSN W S+GSLDG LYSFS +G L K  K+  +D
Sbjct:   252 DSFSGDILWQKTIGPLAETSASDPVIDSNSWASIGSLDGTLYSFSRTGDLYKIPKNAETD 311

Query:   314 SVIQSSP 320
             SVIQ  P
Sbjct:   312 SVIQIEP 318

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0009790 "embryo development" evidence=IMP

GO:0010183 "pollen tube guidance" evidence=IMP

TAIR|locus:2142908 AT5G35930 [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 0.00064, P = 0.00064
 Identities = 45/159 (28%), Positives = 78/159 (49%)

Query:   156 THGQLLW--SAGPVLDQLGYRQGCTKTDVDC---YFTSVPVIDQCEGSIYISNTQGELYS 210
             T  QL+W  S    L  L YR  C    + C    F S P ID+   S+Y+++T G + +
Sbjct:   785 TSSQLIWCGSHDHTLYALDYRSQCCVYKLQCGGSIFAS-PAIDEGHSSLYVASTSGRVIA 843

Query:   211 LSAH-SPYFN-WIQDLSS-FDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILW-HKS 266
             +S   SP+   W+ +L +    +  +TP     +   +  +  V+A+ + SG I+W +++
Sbjct:   844 VSIKDSPFHTLWLFELEAPIFGSLCITPSTQNVICCLVDGQ--VIAM-SPSGTIIWRYRT 900

Query:   267 VGPLGSAE-YAPVVDSNGWISVGSLDGLLYSFSP-SGVL 303
              GP+ +    + V+ S   + V   +G +YS  P SG L
Sbjct:   901 GGPIFAGPCMSHVLPSQ--VLVCCRNGCVYSLEPESGCL 937


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.394    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      626       525   0.00091  119 3  11 22  0.40    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  618 (66 KB)
  Total size of DFA:  296 KB (2153 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  39.94u 0.13s 40.07t   Elapsed:  00:00:02
  Total cpu time:  39.94u 0.13s 40.07t   Elapsed:  00:00:02
  Start:  Sat May 11 01:28:23 2013   End:  Sat May 11 01:28:25 2013

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016208 "AMP binding" evidence=ISS

GO:0031177 "phosphopantetheine binding" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LFS2	GEX3_ARATH	No assigned EC number	0.4254	0.8418	0.8221	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	626
COG1520	370	COG1520, COG1520, FOG: WD40-like repeat [Function	2e-11
pfam13360	234	pfam13360, PQQ_2, PQQ-like domain	4e-11
cd10276	358	cd10276, BamB_YfgL, Beta-barrel assembly machinery	5e-08
cd10276	358	cd10276, BamB_YfgL, Beta-barrel assembly machinery	9e-06
TIGR03300	377	TIGR03300, assembly_YfgL, outer membrane assembly	3e-05
pfam13360	234	pfam13360, PQQ_2, PQQ-like domain	4e-04
COG1520	370	COG1520, COG1520, FOG: WD40-like repeat [Function	7e-04
TIGR03300	377	TIGR03300, assembly_YfgL, outer membrane assembly	0.001
PLN03237	1465	PLN03237, PLN03237, DNA topoisomerase 2; Provision	0.002

>gnl|CDD|224437 COG1520, COG1520, FOG: WD40-like repeat [Function unknown]

 Score = 65.3 bits (159), Expect = 2e-11
 Identities = 68/280 (24%), Positives = 101/280 (36%), Gaps = 30/280 (10%)

Query: 39  LSKPLIGEDGKIYACSEK-TLFAF-ESNGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVAE 96
           LS P++G DGKIY  S    L+A   S GT+ WS ++  +    + PV  G G VY+  +
Sbjct: 103 LSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPV-VGDGTVYVGTD 161

Query: 97  NRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRA--LFAF 154
           +    +  L   T                  G+      + +S +VY+   G    L+A 
Sbjct: 162 DG--HLYALNADTGTLKWTYETPAPLSLSIYGS-----PAIASGTVYVGSDGYDGILYAL 214

Query: 155 -MTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSA 213
               G L WS            G T           PV    +G +Y  +  G+L  L A
Sbjct: 215 NAEDGTLKWSQKVSQTI-----GRTAISTTPAVDGGPVYV--DGGVYAGSYGGKLLCLDA 267

Query: 214 HSPYFNWIQDLSSFDK--AFTLTP--GNNGYLYVTIPVRAL-----VLALDTSSGNILWH 264
            +    W        +      TP  G +G +Y+            + AL    G  L  
Sbjct: 268 DTGELIWSFPAGGSVQGSGLYTTPVAGADGKVYIGFTDNDGRGSGSLYALADVPGGTLLK 327

Query: 265 KSVGPLGSAEYAPVVDSNGWISVGSLDG-LLYSFSPSGVL 303
            S    G    + V  S+G +  G  DG  LY+F    +L
Sbjct: 328 WSYPVGGGYSLSTVAGSDGTLYFGGDDGRGLYAFRDGALL 367

Length = 370

>gnl|CDD|222072 pfam13360, PQQ_2, PQQ-like domain

 Score = 62.8 bits (153), Expect = 4e-11
 Identities = 58/232 (25%), Positives = 94/232 (40%), Gaps = 30/232 (12%)

Query: 38  RLSKPLIGEDGKIYACSEK-TLFAFE-SNGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA 95
            L   +  + G++Y  + K  L A + + G + W  DL     I  AP   G G V +V 
Sbjct: 25  ALGGGVAVDGGRLYVATGKGELVALDAATGKLLWRKDLSGE--ILGAPTVAG-GVVVVVT 81

Query: 96  ENRVL----KVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRAL 151
            +  L          + + + +       GS    + AI G  V    SS      G+ +
Sbjct: 82  ADGSLYALDAETGKLLWSYQRSLPPLTLRGSS---SPAIVGDTVIVGFSS------GKLV 132

Query: 152 FAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSL 211
                 G++LW A PV    G  +     D+    T  PV+D   G +Y S+ QG L +L
Sbjct: 133 ALDPKTGKVLWEA-PVAAPRGGSEIERLVDI----TGTPVVDG--GRVYASSYQGRLVAL 185

Query: 212 SAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILW 263
              +    W +++SS          + G L+V       ++ALD ++G +LW
Sbjct: 186 DLATGKVLWSREISS----INGPAVDGGLLFVVD-DDGELVALDRATGAVLW 232

This domain contains several repeats of the PQQ repeat. Length = 234

>gnl|CDD|199834 cd10276, BamB_YfgL, Beta-barrel assembly machinery (Bam) complex component B and related proteins

 Score = 55.0 bits (133), Expect = 5e-08
 Identities = 36/142 (25%), Positives = 58/142 (40%), Gaps = 21/142 (14%)

Query: 159 QLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYF 218
           ++LWS       +G   G    D+       PV+      +Y ++  G++ + +A +   
Sbjct: 15  EVLWSK-----SVG-NGGMAGIDL------TPVVA--GDMVYAADANGQVSAFNATTGKI 60

Query: 219 NWIQDLSSFDKAFTLTPG--NNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYA 276
            W   LS   K F        NG ++V       + ALD   G+ LW   V    S   +
Sbjct: 61  IWETSLS--GKGFLGGTPAVGNGKIFVG-TESGYLYALDAKDGSELWRTEVSD--SQLLS 115

Query: 277 PVVDSNGWISVGSLDGLLYSFS 298
           P   ++G I VG+ DG LY  +
Sbjct: 116 PPTYADGKIYVGTGDGRLYYCN 137

BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization. Length = 358

>gnl|CDD|199834 cd10276, BamB_YfgL, Beta-barrel assembly machinery (Bam) complex component B and related proteins

 Score = 47.7 bits (114), Expect = 9e-06
 Identities = 52/276 (18%), Positives = 98/276 (35%), Gaps = 29/276 (10%)

Query: 34  RSAFRLSKPLIGEDGKIYACSEK-TLFAF-ESNGTIAWSLDLDFTCNIGTAPVHGGTGEV 91
              F    P +G +GKI+  +E   L+A    +G+  W  ++  + +   +P        
Sbjct: 68  GKGFLGGTPAVG-NGKIFVGTESGYLYALDAKDGSELWRTEV--SDSQLLSPP------- 117

Query: 92  YIVAENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRAL 151
              A+ ++       +GT +          +GK      +     +             +
Sbjct: 118 -TYADGKIY------VGTGDGRLYYCNAE-TGKVVWNRTSTAPELSLRGGAAPVGAYDVV 169

Query: 152 FAFMTHGQLLW---SAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGEL 208
           F    +G ++      G  + +    +   +T++     S        G +Y ++ QG L
Sbjct: 170 FVGDGNGTVVALNTGTGVDIWEFSVSEPRGRTELPRMIDSSVTYVVVGGYLYSTSYQGYL 229

Query: 209 YSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVG 268
            +L   S  F W +  S      T T  N   +YV     +L   LD S+G+ LW ++V 
Sbjct: 230 VALDFESGQFLWSRKASGG--TSTSTDANGR-VYVGDGEGSLY-CLDASTGDELWSQTVL 285

Query: 269 PLGSAEYAPVVDSNGWISVGSL-DGLLYSFSPSGVL 303
                  +P +    +I V    +G LY    +  L
Sbjct: 286 LGRVLS-SPAIYVGVYIYVTDNAEGYLYCLKDNDGL 320

BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization. Length = 358

>gnl|CDD|234163 TIGR03300, assembly_YfgL, outer membrane assembly lipoprotein YfgL

 Score = 46.5 bits (111), Expect = 3e-05
 Identities = 49/174 (28%), Positives = 76/174 (43%), Gaps = 37/174 (21%)

Query: 158 GQLLWSAGPVLDQLGYRQGCTK----TDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSA 213
           GQ LW       ++   +G T+     DVD      PV+D   G +Y  + QG + +L  
Sbjct: 210 GQPLWEQ-----RVALPKGRTELERLVDVD----GDPVVD--GGQVYAVSYQGRVAALDL 258

Query: 214 HSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILW------HKSV 267
            S    W +D SS+ +   +   ++  LYVT     +V+ALD  SG+ LW      ++ +
Sbjct: 259 RSGRVLWKRDASSY-QGPAV---DDNRLYVTDA-DGVVVALDRRSGSELWKNDELKYRQL 313

Query: 268 GPLGSAEYAPVVDSNGWISVGSLDGLLYSFSP-SGVLNKFSKSDTSDSVIQSSP 320
                   AP V   G++ VG  +G L+  S   G     ++  T  S I S P
Sbjct: 314 T-------APAV-LGGYLVVGDFEGYLHWLSREDGSF--VARLKTDGSGIASPP 357

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ [Protein fate, Protein and peptide secretion and trafficking]. Length = 377

>gnl|CDD|222072 pfam13360, PQQ_2, PQQ-like domain

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 7/80 (8%)

Query: 220 WIQDLSSFDKAFTLTPG-NNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPV 278
           W  DL     A       + G LYV      LV ALD ++G +LW K +   G    AP 
Sbjct: 17  WRVDLGG--TALGGGVAVDGGRLYVATGKGELV-ALDAATGKLLWRKDLS--GEILGAPT 71

Query: 279 VDSNGWISVGSLDGLLYSFS 298
           V + G + V + DG LY+  
Sbjct: 72  V-AGGVVVVVTADGSLYALD 90

This domain contains several repeats of the PQQ repeat. Length = 234

>gnl|CDD|224437 COG1520, COG1520, FOG: WD40-like repeat [Function unknown]

 Score = 42.2 bits (99), Expect = 7e-04
 Identities = 51/275 (18%), Positives = 85/275 (30%), Gaps = 49/275 (17%)

Query: 44  IGEDGKIY---ACSEKTLFAFESNGTIAWSLDLDFT--CNIGTAPVHGGTGEVYIVAENR 98
           +   G  Y     ++    A  ++GT+ WS+ L               G G VY+   + 
Sbjct: 19  VLAAGTDYLVAVGADLVAVANNTSGTLLWSVSLGSGGGGIYAGPAPADGDGTVYVGTRDG 78

Query: 99  VLKVDLLKIGT-----SESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFA 153
              +  L   T     S               G+    G     S       +       
Sbjct: 79  --NIFALNPDTGLVKWSYPLLGAVAQLSGPILGSD---GKIYVGSWDGKLYALD------ 127

Query: 154 FMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSA 213
             + G L+WS                     Y+ S PV+    G++Y+    G LY+L+A
Sbjct: 128 -ASTGTLVWSR--------------NVGGSPYYASPPVVGD--GTVYVGTDDGHLYALNA 170

Query: 214 HSPYFNWIQDLSSFDKA-FTLTPG-NNGYLYVTIPV-RALVLALDTSSGNILW-HKSVGP 269
            +    W  +  +        +P   +G +YV       ++ AL+   G + W  K    
Sbjct: 171 DTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQT 230

Query: 270 LG-------SAEYAPVVDSNGWISVGSLDGLLYSF 297
           +G        A     V  +G +  GS  G L   
Sbjct: 231 IGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCL 265

Length = 370

>gnl|CDD|234163 TIGR03300, assembly_YfgL, outer membrane assembly lipoprotein YfgL

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 14/119 (11%)

Query: 185 YFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPG---NNGYL 241
           Y+   P +    G +Y ++  G + +L A +    W  DL        L+ G   + G +
Sbjct: 56  YYRLQPAVAG--GKVYAADADGTVVALDAETGKRLWRVDLDE-----RLSGGVGADGGLV 108

Query: 242 YVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPS 300
           +V    +  V+ALD   G  LW   +         P+V  NG + V + DG L +   +
Sbjct: 109 FVGTE-KGEVIALDAEDGKELWRAKLS--SEVLSPPLVA-NGLVVVRTNDGRLTALDAA 163

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ [Protein fate, Protein and peptide secretion and trafficking]. Length = 377

>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional

 Score = 41.4 bits (97), Expect = 0.002
 Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 31/154 (20%)

Query: 439  RSLQLKK-KAFDRSITELEKKVAEDAVANEVIKKSVVCLGRDEAAASSESKSFPPVYDAK 497
            +SL LK   A ++   EL+K   EDA A E  +K         AAA  ES +   V    
Sbjct: 1151 KSLWLKDLDALEK---ELDKLDKEDAKAEEAREK------LQRAAARGESGAAKKVSRQA 1201

Query: 498  SRSYSFQGAKKESVTIFHTLSATSSAESSSERETSWVSEDKDQSTA-----KAKAKAKAK 552
             +  + +   K++            +ES +  ET   S  + ++ A     K +A AK K
Sbjct: 1202 PKKPAPKKTTKKA------------SESETTEETYGSSAMETENVAEVVKPKGRAGAKKK 1249

Query: 553  APIKAESSSDGDGIMDKEYR----RSPSEPASSS 582
            AP  A+   + D I+D + R       S PA S+
Sbjct: 1250 APAAAKEKEEEDEILDLKDRLAAYNLDSAPAQSA 1283

Length = 1465

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	626
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.78
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.78
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.76
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.75
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	99.65
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	99.64
COG3292	671	Predicted periplasmic ligand-binding sensor domain	99.64
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.51
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	99.48
COG1520	370	FOG: WD40-like repeat [Function unknown]	99.48
COG1520	370	FOG: WD40-like repeat [Function unknown]	99.46
COG3292	671	Predicted periplasmic ligand-binding sensor domain	99.41
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.38
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	99.18
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	99.07
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	99.07
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	98.97
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.92
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	98.92
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.91
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.9
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	98.8
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.01
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.92
COG4993	773	Gcd Glucose dehydrogenase [Carbohydrate transport	97.89
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.85
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	97.82
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	97.68
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.6
COG4993	773	Gcd Glucose dehydrogenase [Carbohydrate transport	97.49
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.92
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	96.66
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.61
PLN00033	398	photosystem II stability/assembly factor; Provisio	96.54
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.49
COG4946	668	Uncharacterized protein related to the periplasmic	96.19
PRK13684	334	Ycf48-like protein; Provisional	96.14
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	96.13
KOG0278	334	consensus Serine/threonine kinase receptor-associa	96.04
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.83
PF07494	24	Reg_prop: Two component regulator propeller; Inter	95.75
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	95.55
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	95.5
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	95.44
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	95.4
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	95.19
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	94.83
PRK13684	334	Ycf48-like protein; Provisional	94.83
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	94.73
KOG2048	691	consensus WD40 repeat protein [General function pr	94.57
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	94.54
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	94.44
KOG0316	307	consensus Conserved WD40 repeat-containing protein	94.43
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.32
KOG2055	514	consensus WD40 repeat protein [General function pr	94.02
KOG0646	476	consensus WD40 repeat protein [General function pr	93.76
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	93.51
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	93.4
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.39
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	93.28
PF07494	24	Reg_prop: Two component regulator propeller; Inter	93.26
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	93.25
KOG2048	691	consensus WD40 repeat protein [General function pr	93.08
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	93.07
COG4946	668	Uncharacterized protein related to the periplasmic	92.54
PLN00033	398	photosystem II stability/assembly factor; Provisio	92.47
KOG0318	603	consensus WD40 repeat stress protein/actin interac	92.29
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	92.18
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	91.31
KOG0639	705	consensus Transducin-like enhancer of split protei	91.28
PHA02713	557	hypothetical protein; Provisional	91.07
PHA02713	557	hypothetical protein; Provisional	90.24
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	89.93
KOG0278	334	consensus Serine/threonine kinase receptor-associa	89.79
KOG0310	487	consensus Conserved WD40 repeat-containing protein	89.45
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	89.1
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	88.95
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	88.73
KOG1273	405	consensus WD40 repeat protein [General function pr	88.52
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	88.16
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	87.4
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	86.73
PRK11028	330	6-phosphogluconolactonase; Provisional	85.84
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	85.69
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	85.63
KOG0318	603	consensus WD40 repeat stress protein/actin interac	85.47
KOG1274	933	consensus WD40 repeat protein [General function pr	85.39
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	84.46
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	83.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	83.27
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	83.02
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	82.08
PRK04922	433	tolB translocation protein TolB; Provisional	81.36
PRK11028	330	6-phosphogluconolactonase; Provisional	81.31
KOG2106	626	consensus Uncharacterized conserved protein, conta	81.28
KOG2321	703	consensus WD40 repeat protein [General function pr	81.19
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	80.71
KOG0639	705	consensus Transducin-like enhancer of split protei	80.7
COG3391	381	Uncharacterized conserved protein [Function unknow	80.61
PRK04792	448	tolB translocation protein TolB; Provisional	80.54
KOG0646	476	consensus WD40 repeat protein [General function pr	80.26

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.78  E-value=2.1e-16  Score=172.11  Aligned_cols=265  Identities=21%  Similarity=0.279  Sum_probs=180.7

Q ss_pred             eeeeEEeeCCEEEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE-CCeEEEEECCCCccccceeE
Q 006913           39 LSKPLIGEDGKIYACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSESATQ  115 (626)
Q Consensus        39 ~Sspvid~dG~IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~~  115 (626)
                      .++|++ .++.||+++ ++.|+++|. +|+.+|+.....  ....+|++. ++.+++++ ++.|+++|+++++     ..
T Consensus       113 ~~~~~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~--~~~ssP~v~-~~~v~v~~~~g~l~ald~~tG~-----~~  183 (394)
T PRK11138        113 SGGVTV-AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG--EALSRPVVS-DGLVLVHTSNGMLQALNESDGA-----VK  183 (394)
T ss_pred             ccccEE-ECCEEEEEcCCCEEEEEECCCCCCcccccCCC--ceecCCEEE-CCEEEEECCCCEEEEEEccCCC-----Ee
Confidence            355777 678999987 567999998 999999887653  345677774 67899988 6789999999886     35


Q ss_pred             EEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeC-CCcEEEEECCcccccccccccccCC-CCCccccceEEE
Q 006913          116 VFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMT-HGQLLWSAGPVLDQLGYRQGCTKTD-VDCYFTSVPVID  193 (626)
Q Consensus       116 ~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~-~G~~~w~~~~~~~~~~~~~~~~~~l-~~~~i~sspviD  193 (626)
                      |.+...... ........+ ...++.+++++.++.++++|. +|+.+|..... ...+    . ... .-..+..+|++.
T Consensus       184 W~~~~~~~~-~~~~~~~sP-~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~-~~~~----~-~~~~~~~~~~~sP~v~  255 (394)
T PRK11138        184 WTVNLDVPS-LTLRGESAP-ATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRIS-QPTG----A-TEIDRLVDVDTTPVVV  255 (394)
T ss_pred             eeecCCCCc-ccccCCCCC-EEECCEEEEEcCCCEEEEEEccCChhhheeccc-cCCC----c-cchhcccccCCCcEEE
Confidence            654322100 000001122 234678999998889999997 49999975110 0000    0 000 000123567777


Q ss_pred             cCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCc
Q 006913          194 QCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSA  273 (626)
Q Consensus       194 ~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~  273 (626)
                        ++.||+++.+|.++++|..+|+..|....+..   ..+.. .+|+||+++. .+.++++|..+|+.+|...... ...
T Consensus       256 --~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~---~~~~~-~~~~vy~~~~-~g~l~ald~~tG~~~W~~~~~~-~~~  327 (394)
T PRK11138        256 --GGVVYALAYNGNLVALDLRSGQIVWKREYGSV---NDFAV-DGGRIYLVDQ-NDRVYALDTRGGVELWSQSDLL-HRL  327 (394)
T ss_pred             --CCEEEEEEcCCeEEEEECCCCCEEEeecCCCc---cCcEE-ECCEEEEEcC-CCeEEEEECCCCcEEEcccccC-CCc
Confidence              78999999999999999999999998765431   12233 4789999985 5799999999999999754321 123


Q ss_pred             eeeEEEeeCCeEEEEEcCCeEEEEcC-CCCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEE
Q 006913          274 EYAPVVDSNGWISVGSLDGLLYSFSP-SGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILC  337 (626)
Q Consensus       274 ~sspvvD~dG~IWVGT~~gGLy~~d~-~g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T  337 (626)
                      ..+|++. +|.||+++.+|.|+++|+ +|+.+|..+... .. +.++|.+      .+|.||+.+
T Consensus       328 ~~sp~v~-~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~-~~-~~s~P~~------~~~~l~v~t  383 (394)
T PRK11138        328 LTAPVLY-NGYLVVGDSEGYLHWINREDGRFVAQQKVDS-SG-FLSEPVV------ADDKLLIQA  383 (394)
T ss_pred             ccCCEEE-CCEEEEEeCCCEEEEEECCCCCEEEEEEcCC-Cc-ceeCCEE------ECCEEEEEe
Confidence            4567765 899999999999999997 599988765311 11 3445543      356777654

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.78  E-value=5.6e-16  Score=168.74  Aligned_cols=235  Identities=21%  Similarity=0.265  Sum_probs=167.0

Q ss_pred             eeeEEeeCCEEEEEe-CCcEEEEcC-CCCEEEEEeCCCCC---------CcccCeEEecCCeEEEEE-CCeEEEEECCCC
Q 006913           40 SKPLIGEDGKIYACS-EKTLFAFES-NGTIAWSLDLDFTC---------NIGTAPVHGGTGEVYIVA-ENRVLKVDLLKI  107 (626)
Q Consensus        40 Sspvid~dG~IwIgS-dggL~a~d~-~G~~~W~~~~~~~~---------~i~~sp~iD~dG~IwVgT-~ggL~~id~~~~  107 (626)
                      ++|++ .+|.||+++ ++.|+++|. +|+.+|++......         ....+|++ .++.||+++ ++.|+++|.+++
T Consensus        63 ~sPvv-~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~v~v~~~~g~l~ald~~tG  140 (394)
T PRK11138         63 LHPAV-AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV-AGGKVYIGSEKGQVYALNAEDG  140 (394)
T ss_pred             eccEE-ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE-ECCEEEEEcCCCEEEEEECCCC
Confidence            47888 678999987 578999998 89999998764310         11234565 468999998 688999999988


Q ss_pred             ccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeC-CCcEEEEECCcccccccccccccCCCCCcc
Q 006913          108 GTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMT-HGQLLWSAGPVLDQLGYRQGCTKTDVDCYF  186 (626)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~-~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i  186 (626)
                      +.     .|.....      + .+...+...++.|++++.++.|+++|+ +|+.+|.+....         + ... ...
T Consensus       141 ~~-----~W~~~~~------~-~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---------~-~~~-~~~  197 (394)
T PRK11138        141 EV-----AWQTKVA------G-EALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDV---------P-SLT-LRG  197 (394)
T ss_pred             CC-----cccccCC------C-ceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCC---------C-ccc-ccC
Confidence            64     4543221      1 122233345789999988888999998 599999862100         0 000 001


Q ss_pred             ccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCC----------CcceeeeeecCCeEEEEEcCCCEEEEEEC
Q 006913          187 TSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSF----------DKAFTLTPGNNGYLYVTIPVRALVLALDT  256 (626)
Q Consensus       187 ~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~----------~~v~sI~~D~dG~LwVGT~~gG~l~alD~  256 (626)
                      ..+|+++  ++.+++++.+|.++++|..+|+..|.......          ....++.. .++.+|+++. ++.++++|.
T Consensus       198 ~~sP~v~--~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v-~~~~vy~~~~-~g~l~ald~  273 (394)
T PRK11138        198 ESAPATA--FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVV-VGGVVYALAY-NGNLVALDL  273 (394)
T ss_pred             CCCCEEE--CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEE-ECCEEEEEEc-CCeEEEEEC
Confidence            2467777  67899999999999999999999998643210          00122333 3789999885 579999999


Q ss_pred             CCCcEEEEEecCCCCCceeeEEEeeCCeEEEEEcCCeEEEEcCC-CCEEEEee
Q 006913          257 SSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPS-GVLNKFSK  308 (626)
Q Consensus       257 ~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~-g~~~~~~~  308 (626)
                      .+|+.+|....+.    ...++.+ +|+||+++.++.|+++|.. |+..|...
T Consensus       274 ~tG~~~W~~~~~~----~~~~~~~-~~~vy~~~~~g~l~ald~~tG~~~W~~~  321 (394)
T PRK11138        274 RSGQIVWKREYGS----VNDFAVD-GGRIYLVDQNDRVYALDTRGGVELWSQS  321 (394)
T ss_pred             CCCCEEEeecCCC----ccCcEEE-CCEEEEEcCCCeEEEEECCCCcEEEccc
Confidence            9999999876542    1235555 8999999999999999984 88888644

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.76  E-value=2.8e-15  Score=161.96  Aligned_cols=233  Identities=22%  Similarity=0.312  Sum_probs=167.5

Q ss_pred             eeeEEeeCCEEEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE-CCeEEEEECCCCccccceeEE
Q 006913           40 SKPLIGEDGKIYACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSESATQV  116 (626)
Q Consensus        40 Sspvid~dG~IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~~~  116 (626)
                      ++|++ .++.||+++ ++.|+++|. +|+.+|++.+..  ....+|+++ ++.+|+++ ++.|+++|..+++     ..|
T Consensus        59 ~~p~v-~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~--~~~~~p~v~-~~~v~v~~~~g~l~ald~~tG~-----~~W  129 (377)
T TIGR03300        59 LQPAV-AGGKVYAADADGTVVALDAETGKRLWRVDLDE--RLSGGVGAD-GGLVFVGTEKGEVIALDAEDGK-----ELW  129 (377)
T ss_pred             cceEE-ECCEEEEECCCCeEEEEEccCCcEeeeecCCC--CcccceEEc-CCEEEEEcCCCEEEEEECCCCc-----Eee
Confidence            68888 578999998 568999997 999999987754  244567764 68999998 7899999998875     355


Q ss_pred             EecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeC-CCcEEEEECCcccccccccccccCCCCCccccceEEEcC
Q 006913          117 FYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMT-HGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQC  195 (626)
Q Consensus       117 ~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~-~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~  195 (626)
                      .....      + .+...+...++.+++++.++.|+++|. +|+.+|.+......        ....   ...+|++.  
T Consensus       130 ~~~~~------~-~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~--------~~~~---~~~sp~~~--  189 (377)
T TIGR03300       130 RAKLS------S-EVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPA--------LTLR---GSASPVIA--  189 (377)
T ss_pred             eeccC------c-eeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCc--------eeec---CCCCCEEE--
Confidence            43221      1 122333345789999988888999997 59999986210000        0000   02456776  


Q ss_pred             CCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCC----------CcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEE
Q 006913          196 EGSIYISNTQGELYSLSAHSPYFNWIQDLSSF----------DKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHK  265 (626)
Q Consensus       196 dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~----------~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~  265 (626)
                      ++.+++++.++.++++|+++|+..|.......          ....++.. .++.+|+++. ++.++++|..+|+..|..
T Consensus       190 ~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~-~g~l~a~d~~tG~~~W~~  267 (377)
T TIGR03300       190 DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-DGGQVYAVSY-QGRVAALDLRSGRVLWKR  267 (377)
T ss_pred             CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-ECCEEEEEEc-CCEEEEEECCCCcEEEee
Confidence            67899999889999999999999997543210          01112223 3789999885 579999999999999987


Q ss_pred             ecCCCCCceeeEEEeeCCeEEEEEcCCeEEEEcC-CCCEEEEee
Q 006913          266 SVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSP-SGVLNKFSK  308 (626)
Q Consensus       266 ~~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~-~g~~~~~~~  308 (626)
                      ....    ...|+++ +++||+++.++.|+++|. +|+.+|...
T Consensus       268 ~~~~----~~~p~~~-~~~vyv~~~~G~l~~~d~~tG~~~W~~~  306 (377)
T TIGR03300       268 DASS----YQGPAVD-DNRLYVTDADGVVVALDRRSGSELWKND  306 (377)
T ss_pred             ccCC----ccCceEe-CCEEEEECCCCeEEEEECCCCcEEEccc
Confidence            6432    3456666 799999999999999998 488888653

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.75  E-value=2.9e-15  Score=161.82  Aligned_cols=275  Identities=23%  Similarity=0.297  Sum_probs=182.5

Q ss_pred             ccccc--cCCceeeeeEEeeCCEEEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE-CCeEEEEE
Q 006913           29 KVPYR--RSAFRLSKPLIGEDGKIYACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA-ENRVLKVD  103 (626)
Q Consensus        29 ~~~~~--~~~~~~Sspvid~dG~IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT-~ggL~~id  103 (626)
                      ++.|.  -...+.++|++ .++.+|+++ ++.|+++|. +|+.+|......  ....+|+++ ++.+++++ ++.|+++|
T Consensus        86 ~~~W~~~~~~~~~~~p~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~--~~~~~p~v~-~~~v~v~~~~g~l~a~d  161 (377)
T TIGR03300        86 KRLWRVDLDERLSGGVGA-DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS--EVLSPPLVA-NGLVVVRTNDGRLTALD  161 (377)
T ss_pred             cEeeeecCCCCcccceEE-cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc--eeecCCEEE-CCEEEEECCCCeEEEEE
Confidence            44553  33456678888 578999987 678999998 999999887653  244566664 57888887 78899999


Q ss_pred             CCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeC-CCcEEEEECCcccccccccccccCCC
Q 006913          104 LLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMT-HGQLLWSAGPVLDQLGYRQGCTKTDV  182 (626)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~-~G~~~w~~~~~~~~~~~~~~~~~~l~  182 (626)
                      +.+++.     .|.+........ ... ...+...++.+++++.++.++++|+ +|+.+|....     ....+......
T Consensus       162 ~~tG~~-----~W~~~~~~~~~~-~~~-~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~-----~~~~g~~~~~~  229 (377)
T TIGR03300       162 AATGER-----LWTYSRVTPALT-LRG-SASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRV-----ALPKGRTELER  229 (377)
T ss_pred             cCCCce-----eeEEccCCCcee-ecC-CCCCEEECCEEEEECCCCEEEEEEccCCCEeeeecc-----ccCCCCCchhh
Confidence            988753     554432111000 000 1112234578999988889999997 5999997411     00000000000


Q ss_pred             CCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEE
Q 006913          183 DCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNIL  262 (626)
Q Consensus       183 ~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~  262 (626)
                      -..+..+|+++  ++.||+++.+|.++++|.++|++.|......   ..++.. .+++||+++. .+.++++|..+|+.+
T Consensus       230 ~~~~~~~p~~~--~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~---~~~p~~-~~~~vyv~~~-~G~l~~~d~~tG~~~  302 (377)
T TIGR03300       230 LVDVDGDPVVD--GGQVYAVSYQGRVAALDLRSGRVLWKRDASS---YQGPAV-DDNRLYVTDA-DGVVVALDRRSGSEL  302 (377)
T ss_pred             hhccCCccEEE--CCEEEEEEcCCEEEEEECCCCcEEEeeccCC---ccCceE-eCCEEEEECC-CCeEEEEECCCCcEE
Confidence            00123457776  7899999999999999999999999876432   122333 3789999984 579999999999999


Q ss_pred             EEEe-cCCCCCceeeEEEeeCCeEEEEEcCCeEEEEcCC-CCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEE
Q 006913          263 WHKS-VGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPS-GVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILC  337 (626)
Q Consensus       263 w~~~-~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~-g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T  337 (626)
                      |... ..  .....+|++. ++.||+++.+|.|+++|+. |+.+|..+..  ...+..+|.+      .++.||+.+
T Consensus       303 W~~~~~~--~~~~ssp~i~-g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~--~~~~~~sp~~------~~~~l~v~~  368 (377)
T TIGR03300       303 WKNDELK--YRQLTAPAVV-GGYLVVGDFEGYLHWLSREDGSFVARLKTD--GSGIASPPVV------VGDGLLVQT  368 (377)
T ss_pred             Ecccccc--CCccccCEEE-CCEEEEEeCCCEEEEEECCCCCEEEEEEcC--CCccccCCEE------ECCEEEEEe
Confidence            9763 22  2234567665 7899999999999999985 8998866521  1113445543      345676554

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=99.65  E-value=1.6e-13  Score=153.66  Aligned_cols=267  Identities=17%  Similarity=0.199  Sum_probs=172.0

Q ss_pred             eC-CEEEEEe-CCcEEEEcC-CCCEEEEEeCCCC----CCcccCeEEecCCeEEEEE----------CCeEEEEECCCCc
Q 006913           46 ED-GKIYACS-EKTLFAFES-NGTIAWSLDLDFT----CNIGTAPVHGGTGEVYIVA----------ENRVLKVDLLKIG  108 (626)
Q Consensus        46 ~d-G~IwIgS-dggL~a~d~-~G~~~W~~~~~~~----~~i~~sp~iD~dG~IwVgT----------~ggL~~id~~~~~  108 (626)
                      .+ +.||+++ ++.|+++|. +|+.+|.+.....    ..+..+|.++. +.+|+++          ++.|+++|..+++
T Consensus       108 ~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~  186 (488)
T cd00216         108 WDPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVK-KLVIIGSSGAEFFACGVRGALRAYDVETGK  186 (488)
T ss_pred             ccCCeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEEC-CEEEEeccccccccCCCCcEEEEEECCCCc
Confidence            35 8999988 678999998 9999999876431    01356777754 8888886          3579999999986


Q ss_pred             cccceeEEEecCCCCC---------------CCCCCeeEEEEEE-cCCeEEEEEcCC------------------eEEEE
Q 006913          109 TSESATQVFYGTGSGK---------------GGTGAIAGIAVST-SSSSVYINVKGR------------------ALFAF  154 (626)
Q Consensus       109 ~~~~~~~~~~~~~~~~---------------~~~~~~I~s~~~d-~dG~LwIgT~~g------------------GL~a~  154 (626)
                      .     .|.+......               ...+.+...+..+ .++.||+++.++                  .|+++
T Consensus       187 ~-----~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Al  261 (488)
T cd00216         187 L-----LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVAL  261 (488)
T ss_pred             e-----eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEE
Confidence            4     5544321100               0001122234444 578999997543                  59999


Q ss_pred             eCC-CcEEEEECCcccccccccccccCCCCCccccceEEEc---CCC----eEEEEcCCCeEEEEeCCCCeEEEEEcCCC
Q 006913          155 MTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQ---CEG----SIYISNTQGELYSLSAHSPYFNWIQDLSS  226 (626)
Q Consensus       155 d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~---~dG----~LwIGT~~GgL~~ld~~tg~~~w~~~~~s  226 (626)
                      |.. |+.+|.+....          ...-.....++|.+..   -++    .|++++.+|.|++||.++|+..|......
T Consensus       262 d~~tG~~~W~~~~~~----------~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~  331 (488)
T cd00216         262 DADTGKVKWFYQTTP----------HDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE  331 (488)
T ss_pred             cCCCCCEEEEeeCCC----------CCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec
Confidence            984 99999862100          0000000112233210   022    48999999999999999999999865431


Q ss_pred             CCcceeeeeecCCeEEEEEc-----------------CCCEEEEEECCCCcEEEEEecCCC-------CCceeeEEEeeC
Q 006913          227 FDKAFTLTPGNNGYLYVTIP-----------------VRALVLALDTSSGNILWHKSVGPL-------GSAEYAPVVDSN  282 (626)
Q Consensus       227 ~~~v~sI~~D~dG~LwVGT~-----------------~gG~l~alD~~tG~~~w~~~~~~l-------~~~~sspvvD~d  282 (626)
                      .    .+..+ .+.+|+++.                 ..+.++++|..+|+.+|+......       .....++....+
T Consensus       332 ~----~~~~~-~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g  406 (488)
T cd00216         332 Q----PMAYD-PGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAG  406 (488)
T ss_pred             c----ccccC-CceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecC
Confidence            1    11222 267777531                 246899999999999999866510       011223333347


Q ss_pred             CeEEEEEcCCeEEEEcC-CCCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEEeee
Q 006913          283 GWISVGSLDGLLYSFSP-SGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLMV  340 (626)
Q Consensus       283 G~IWVGT~~gGLy~~d~-~g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~t~  340 (626)
                      +.||+|+.+|.||++|. +|+.+|..+.   ...+..+|.+    ...+|.+||++...
T Consensus       407 ~~v~~g~~dG~l~ald~~tG~~lW~~~~---~~~~~a~P~~----~~~~g~~yv~~~~g  458 (488)
T cd00216         407 NLVFAGAADGYFRAFDATTGKELWKFRT---PSGIQATPMT----YEVNGKQYVGVMVG  458 (488)
T ss_pred             CeEEEECCCCeEEEEECCCCceeeEEEC---CCCceEcCEE----EEeCCEEEEEEEec
Confidence            89999999999999997 5999998662   2223455542    34579999988764

The alignment model contains an 8-bladed beta-propeller.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=99.64  E-value=3e-13  Score=151.58  Aligned_cols=259  Identities=18%  Similarity=0.275  Sum_probs=163.7

Q ss_pred             CceeeeeEEeeCCEEEEEe-CCcEEEEcC-CCCEEEEEeCCCC-----CCccc-CeEEecCCeEEEEE-CCeEEEEECCC
Q 006913           36 AFRLSKPLIGEDGKIYACS-EKTLFAFES-NGTIAWSLDLDFT-----CNIGT-APVHGGTGEVYIVA-ENRVLKVDLLK  106 (626)
Q Consensus        36 ~~~~Sspvid~dG~IwIgS-dggL~a~d~-~G~~~W~~~~~~~-----~~i~~-sp~iD~dG~IwVgT-~ggL~~id~~~  106 (626)
                      ..+.++|++ .+|.||+++ ++.|+++|. +|+.+|++.....     ..... .+.+..++.||+++ ++.|+++|.++
T Consensus        51 ~~~~~sPvv-~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~T  129 (488)
T cd00216          51 RGQEGTPLV-VDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAET  129 (488)
T ss_pred             CCcccCCEE-ECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCC
Confidence            468889999 688999997 678999998 9999998866421     01111 12222238999998 78999999998


Q ss_pred             CccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEc---------CCeEEEEeC-CCcEEEEECCcccc-ccccc
Q 006913          107 IGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVK---------GRALFAFMT-HGQLLWSAGPVLDQ-LGYRQ  175 (626)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~---------~gGL~a~d~-~G~~~w~~~~~~~~-~~~~~  175 (626)
                      ++     ..|.+....... ....+...+...++.+++++.         .+.|+++|. +|+.+|.+...... ...+.
T Consensus       130 G~-----~~W~~~~~~~~~-~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~  203 (488)
T cd00216         130 GK-----QVWKFGNNDQVP-PGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPT  203 (488)
T ss_pred             CC-----EeeeecCCCCcC-cceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCC
Confidence            86     466554322100 011122333334588888863         467999998 59999986221000 00000


Q ss_pred             c-cc---cCCCCCccccceEEEcCCCeEEEEcCCC------------------eEEEEeCCCCeEEEEEcCCCC-----C
Q 006913          176 G-CT---KTDVDCYFTSVPVIDQCEGSIYISNTQG------------------ELYSLSAHSPYFNWIQDLSSF-----D  228 (626)
Q Consensus       176 ~-~~---~~l~~~~i~sspviD~~dG~LwIGT~~G------------------gL~~ld~~tg~~~w~~~~~s~-----~  228 (626)
                      . ..   ....+..+..+|++|..++.||+++.++                  .|++||.++|+..|.+.....     .
T Consensus       204 ~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~  283 (488)
T cd00216         204 WGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYD  283 (488)
T ss_pred             CCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccc
Confidence            0 00   0001122345688874368899998654                  699999999999998654311     1


Q ss_pred             c--ceeee--eecCC----eEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEEEEE-----------
Q 006913          229 K--AFTLT--PGNNG----YLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGS-----------  289 (626)
Q Consensus       229 ~--v~sI~--~D~dG----~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT-----------  289 (626)
                      .  ...+.  .+.+|    .+++++. +|.++++|..+|+.+|......     ..+..+ .+.+|+++           
T Consensus       284 ~~s~p~~~~~~~~~g~~~~~V~~g~~-~G~l~ald~~tG~~~W~~~~~~-----~~~~~~-~~~vyv~~~~~~~~~~~~~  356 (488)
T cd00216         284 GPNQPSLADIKPKDGKPVPAIVHAPK-NGFFYVLDRTTGKLISARPEVE-----QPMAYD-PGLVYLGAFHIPLGLPPQK  356 (488)
T ss_pred             cCCCCeEEeccccCCCeeEEEEEECC-CceEEEEECCCCcEeeEeEeec-----cccccC-CceEEEccccccccCcccc
Confidence            1  11111  11344    3888874 5799999999999999875431     112223 36777754           


Q ss_pred             -------cCCeEEEEcC-CCCEEEEee
Q 006913          290 -------LDGLLYSFSP-SGVLNKFSK  308 (626)
Q Consensus       290 -------~~gGLy~~d~-~g~~~~~~~  308 (626)
                             .++.|+++|. +|+.+|...
T Consensus       357 ~~~~~~~~~G~l~AlD~~tG~~~W~~~  383 (488)
T cd00216         357 KKRCKKPGKGGLAALDPKTGKVVWEKR  383 (488)
T ss_pred             cCCCCCCCceEEEEEeCCCCcEeeEee
Confidence                   3578999997 599999765

The alignment model contains an 8-bladed beta-propeller.

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=99.64  E-value=1.1e-14  Score=157.44  Aligned_cols=268  Identities=11%  Similarity=0.028  Sum_probs=166.6

Q ss_pred             CceeeeeEEeeCCEEEEEeCCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEECCeEEEEECCCCcccccee
Q 006913           36 AFRLSKPLIGEDGKIYACSEKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVAENRVLKVDLLKIGTSESAT  114 (626)
Q Consensus        36 ~~~~Sspvid~dG~IwIgSdggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT~ggL~~id~~~~~~~~~~~  114 (626)
                      .-.....+.|.+|.+||||++||++||. .|+..- ...+.....+..++.|.+|++||||+.|+++.++.+..+    .
T Consensus       164 d~~V~aLv~D~~g~lWvgT~dGL~~fd~~~gkalq-l~s~~~dk~I~al~~d~qg~LWVGTdqGv~~~e~~G~~~----s  238 (671)
T COG3292         164 DTPVVALVFDANGRLWVGTPDGLSYFDAGRGKALQ-LASPPLDKAINALIADVQGRLWVGTDQGVYLQEAEGWRA----S  238 (671)
T ss_pred             CccceeeeeeccCcEEEecCCcceEEccccceEEE-cCCCcchhhHHHHHHHhcCcEEEEeccceEEEchhhccc----c
Confidence            3445667889999999999999999998 887642 221111123556677889999999999999999877321    1


Q ss_pred             EEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeC-CCcEEEEECCcccccccccccccCCCCCccccceEEE
Q 006913          115 QVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMT-HGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVID  193 (626)
Q Consensus       115 ~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~-~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD  193 (626)
                      .+.      ...+...|.....|.+|.+||||. +|+..+.. ++.+.... .       +. |   ..-.. ..+...|
T Consensus       239 n~~------~~lp~~~I~ll~qD~qG~lWiGTe-nGl~r~~l~rq~Lq~~~-~-------~~-~---l~~S~-vnsL~~D  298 (671)
T COG3292         239 NWG------PMLPSGNILLLVQDAQGELWIGTE-NGLWRTRLPRQGLQIPL-S-------KM-H---LGVST-VNSLWLD  298 (671)
T ss_pred             ccC------CCCcchheeeeecccCCCEEEeec-ccceeEecCCCCccccc-c-------cc-C---Ccccc-ccceeec
Confidence            111      122334677888899999999997 57877764 44332211 0       00 0   00001 2445678


Q ss_pred             cCCCeEEEEcCCCeEEEEeCCCCeEE-EEEcCCC--CCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEE-EecCC
Q 006913          194 QCEGSIYISNTQGELYSLSAHSPYFN-WIQDLSS--FDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWH-KSVGP  269 (626)
Q Consensus       194 ~~dG~LwIGT~~GgL~~ld~~tg~~~-w~~~~~s--~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~-~~~~~  269 (626)
                      . +|.||++++++ +..|....-... ...+..+  ...........+..++..+. .+.+...+..+|..... +...+
T Consensus       299 ~-dGsLWv~t~~g-iv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns-~g~L~van~stG~~v~sv~q~Rg  375 (671)
T COG3292         299 T-DGSLWVGTYGG-IVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNS-IGELMVANGSTGELVRSVHQLRG  375 (671)
T ss_pred             c-CCCEeeeccCc-eEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccc-cceEEEecCCCCcEEEEeeeccc
Confidence            5 99999999775 566644321110 1112211  11111111223567787764 45777788888876543 22221


Q ss_pred             CCCceeeEEEeeCCeEEEEEcCCeEEEEcCCCCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEEe
Q 006913          270 LGSAEYAPVVDSNGWISVGSLDGLLYSFSPSGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCL  338 (626)
Q Consensus       270 l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~  338 (626)
                        ..++...+|++|.+|+||.+.||-+++.+.  .|-.- ...++  +++..|.+|++|.++++||+|.
T Consensus       376 --~nit~~~~d~~g~lWlgs~q~GLsrl~n~n--~~avl-de~ag--l~ss~V~aived~dnsLWIGTs  437 (671)
T COG3292         376 --MNITTTLEDSRGRLWLGSMQNGLSRLDNKN--EWAVL-DEDAG--LPSSEVSAIVEDPDNSLWIGTS  437 (671)
T ss_pred             --cccchhhhccCCcEEEEecccchhhhccCC--ccccc-ccccC--CcccceeeeeecCCCCEEEecc
Confidence              234555678899999999999999997643  22111 11233  5667788999999999999875

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.51  E-value=1.8e-11  Score=122.81  Aligned_cols=220  Identities=23%  Similarity=0.348  Sum_probs=148.7

Q ss_pred             CCcEEEEcC-CCCEEEEEeCCCC-CCcccCeEEecCCeEEEEE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCee
Q 006913           55 EKTLFAFES-NGTIAWSLDLDFT-CNIGTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIA  131 (626)
Q Consensus        55 dggL~a~d~-~G~~~W~~~~~~~-~~i~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I  131 (626)
                      ++.|.++|. +|+.+|...+... ......++ ..++.+|+++ ++.|+++|..+++     ..|.+....       .+
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~l~~~d~~tG~-----~~W~~~~~~-------~~   68 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-PDGGRVYVASGDGNLYALDAKTGK-----VLWRFDLPG-------PI   68 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-EETTEEEEEETTSEEEEEETTTSE-----EEEEEECSS-------CG
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEE-EeCCEEEEEcCCCEEEEEECCCCC-----EEEEeeccc-------cc
Confidence            356899998 9999999876321 11122233 3578999997 8999999998875     456543311       11


Q ss_pred             EEEEEEcCCeEEEEEcCCeEEEEeC-CCcEEEE-ECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEE
Q 006913          132 GIAVSTSSSSVYINVKGRALFAFMT-HGQLLWS-AGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELY  209 (626)
Q Consensus       132 ~s~~~d~dG~LwIgT~~gGL~a~d~-~G~~~w~-~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~  209 (626)
                      ...+...++.|++++.++.|+++|. +|+++|. .....          ... .......+.++  ++.+++++.++.|+
T Consensus        69 ~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~----------~~~-~~~~~~~~~~~--~~~~~~~~~~g~l~  135 (238)
T PF13360_consen   69 SGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSS----------PPA-GVRSSSSPAVD--GDRLYVGTSSGKLV  135 (238)
T ss_dssp             GSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SS----------CTC-STB--SEEEEE--TTEEEEEETCSEEE
T ss_pred             cceeeecccccccccceeeeEecccCCcceeeeeccccc----------ccc-ccccccCceEe--cCEEEEEeccCcEE
Confidence            1123567889999998788999995 6999998 31100          000 01112335555  78899998889999


Q ss_pred             EEeCCCCeEEEEEcCCCCC--c--------ceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEE
Q 006913          210 SLSAHSPYFNWIQDLSSFD--K--------AFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVV  279 (626)
Q Consensus       210 ~ld~~tg~~~w~~~~~s~~--~--------v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvv  279 (626)
                      ++|+++|+..|........  .        ...+.. .+|.+|+++.. +.++++|..+|+.+|.....   .....+..
T Consensus       136 ~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~-g~~~~~d~~tg~~~w~~~~~---~~~~~~~~  210 (238)
T PF13360_consen  136 ALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVI-SDGRVYVSSGD-GRVVAVDLATGEKLWSKPIS---GIYSLPSV  210 (238)
T ss_dssp             EEETTTTEEEEEEESSTT-SS--EEEETTEEEEEEC-CTTEEEEECCT-SSEEEEETTTTEEEEEECSS----ECECEEC
T ss_pred             EEecCCCcEEEEeecCCCCCCcceeeecccccceEE-ECCEEEEEcCC-CeEEEEECCCCCEEEEecCC---CccCCcee
Confidence            9999999999998653211  0        122223 35699998854 44677799999988965533   22232444


Q ss_pred             eeCCeEEEEEcCCeEEEEcCC-CCEEEE
Q 006913          280 DSNGWISVGSLDGLLYSFSPS-GVLNKF  306 (626)
Q Consensus       280 D~dG~IWVGT~~gGLy~~d~~-g~~~~~  306 (626)
                      + ++.||+++.++.|+++|.. |+..|.
T Consensus       211 ~-~~~l~~~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  211 D-GGTLYVTSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             C-CTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             e-CCEEEEEeCCCEEEEEECCCCCEEeE
Confidence            4 8999999988999999974 888885

...

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=99.48  E-value=9.3e-11  Score=132.48  Aligned_cols=178  Identities=17%  Similarity=0.241  Sum_probs=115.2

Q ss_pred             ceeeeeEEeeCCEEEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCc---------ccCeEEecCCeEEEEE-CCeEEEEEC
Q 006913           37 FRLSKPLIGEDGKIYACS-EKTLFAFES-NGTIAWSLDLDFTCNI---------GTAPVHGGTGEVYIVA-ENRVLKVDL  104 (626)
Q Consensus        37 ~~~Sspvid~dG~IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i---------~~sp~iD~dG~IwVgT-~ggL~~id~  104 (626)
                      .+.++|++ .+|.||+++ ++.|+++|. +|+.+|++........         ...+.+ .++.||+++ ++.|+++|.
T Consensus        60 g~~stPvv-~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av-~~~~v~v~t~dg~l~ALDa  137 (527)
T TIGR03075        60 GQESQPLV-VDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL-YDGKVFFGTLDARLVALDA  137 (527)
T ss_pred             CcccCCEE-ECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE-ECCEEEEEcCCCEEEEEEC
Confidence            36789999 689999987 678999998 9999999865321001         122344 457899998 899999999


Q ss_pred             CCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEc------CCeEEEEeC-CCcEEEEECCcccccc-----
Q 006913          105 LKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVK------GRALFAFMT-HGQLLWSAGPVLDQLG-----  172 (626)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~------~gGL~a~d~-~G~~~w~~~~~~~~~~-----  172 (626)
                      .+++.     .|........  ....+...+...++.|++++.      .+.|+++|. +|+.+|.+........     
T Consensus       138 ~TGk~-----~W~~~~~~~~--~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~  210 (527)
T TIGR03075       138 KTGKV-----VWSKKNGDYK--AGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKA  210 (527)
T ss_pred             CCCCE-----Eeeccccccc--ccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccc
Confidence            99863     5544321111  011223334445789999864      467999998 5999998633211100     


Q ss_pred             -----cccc------cccCCCCCccccceEEEcCCCeEEEEcCC-----C-----------eEEEEeCCCCeEEEEEc
Q 006913          173 -----YRQG------CTKTDVDCYFTSVPVIDQCEGSIYISNTQ-----G-----------ELYSLSAHSPYFNWIQD  223 (626)
Q Consensus       173 -----~~~~------~~~~l~~~~i~sspviD~~dG~LwIGT~~-----G-----------gL~~ld~~tg~~~w~~~  223 (626)
                           ...+      ......+.++...+.+|...|.||+++.+     +           .|+++|.+||+++|.+.
T Consensus       211 ~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q  288 (527)
T TIGR03075       211 DKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQ  288 (527)
T ss_pred             ccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeee
Confidence                 0000      00001123455667888657889999843     2           68999999999999854

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=99.48  E-value=6.1e-11  Score=128.25  Aligned_cols=272  Identities=22%  Similarity=0.342  Sum_probs=174.4

Q ss_pred             eeeeeEEeeCCEEEEEe-C-Cc-EEEEcCCCCEEEEEeCCCC-CCcccCeE-EecCCeEEEEE-CCeEEEEECCCCcccc
Q 006913           38 RLSKPLIGEDGKIYACS-E-KT-LFAFESNGTIAWSLDLDFT-CNIGTAPV-HGGTGEVYIVA-ENRVLKVDLLKIGTSE  111 (626)
Q Consensus        38 ~~Sspvid~dG~IwIgS-d-gg-L~a~d~~G~~~W~~~~~~~-~~i~~sp~-iD~dG~IwVgT-~ggL~~id~~~~~~~~  111 (626)
                      +.+.|+. ..+..|... . +. .+....+|..+|....... ......+. .+.+|++|+++ ++.|+++|++++..  
T Consensus        14 ~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~~~dg~v~~~~~~G~i~A~d~~~g~~--   90 (370)
T COG1520          14 LGATPVL-AAGTDYLVAVGADLVAVANNTSGTLLWSVSLGSGGGGIYAGPAPADGDGTVYVGTRDGNIFALNPDTGLV--   90 (370)
T ss_pred             EEeeeec-CCCceEEeeccCCceEEEcccCcceeeeeecccCccceEeccccEeeCCeEEEecCCCcEEEEeCCCCcE--
Confidence            3344444 444666664 2 22 3333348999998654321 12344553 67899999998 67799999999752  


Q ss_pred             ceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeC-CCcEEEEECCcccccccccccccCCCCCccccce
Q 006913          112 SATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMT-HGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVP  190 (626)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~-~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~ssp  190 (626)
                         .|......    ....+.......+|+||+++.++-++|+|. +|+.+|.+..     +      .  . -.+...+
T Consensus        91 ---~W~~~~~~----~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~-----~------~--~-~~~~~~~  149 (370)
T COG1520          91 ---KWSYPLLG----AVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNV-----G------G--S-PYYASPP  149 (370)
T ss_pred             ---EecccCcC----cceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEec-----C------C--C-eEEecCc
Confidence               45432211    012334444455999999998777999998 6999998611     0      0  0 0122334


Q ss_pred             EEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCC---CCcceeeeeecCCeEEEEEcC-CCEEEEEECCCCcEEEEE-
Q 006913          191 VIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSS---FDKAFTLTPGNNGYLYVTIPV-RALVLALDTSSGNILWHK-  265 (626)
Q Consensus       191 viD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s---~~~v~sI~~D~dG~LwVGT~~-gG~l~alD~~tG~~~w~~-  265 (626)
                      +..  ++.+|+++.++.++++|.++|...|......   ......+. ..++.+|++... .+.++++|+.+|.+.|.. 
T Consensus       150 v~~--~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~  226 (370)
T COG1520         150 VVG--DGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDGILYALNAEDGTLKWSQK  226 (370)
T ss_pred             EEc--CcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-eecceEEEecCCCcceEEEEEccCCcEeeeee
Confidence            554  7999999878899999999999999965432   11111122 468899999852 458999999999999984 


Q ss_pred             ---ecCCCC----CceeeEEEeeCCeEEEEEcCCeEEEEcCC-CCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEE
Q 006913          266 ---SVGPLG----SAEYAPVVDSNGWISVGSLDGLLYSFSPS-GVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILC  337 (626)
Q Consensus       266 ---~~~~l~----~~~sspvvD~dG~IWVGT~~gGLy~~d~~-g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T  337 (626)
                         ..+...    ..+....+..++.+|.+..++.++|++.. |+.+|.....   ..+..++.+.+-....+|.+|++.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~---~~~~~~~~~~~~~~~~dG~v~~~~  303 (370)
T COG1520         227 VSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG---GSVQGSGLYTTPVAGADGKVYIGF  303 (370)
T ss_pred             eecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc---cEeccCCeeEEeecCCCccEEEEE
Confidence               222110    11222334447888999988899999974 9999987632   112334433333445799999886


Q ss_pred             ee
Q 006913          338 LM  339 (626)
Q Consensus       338 ~t  339 (626)
                      ..
T Consensus       304 ~~  305 (370)
T COG1520         304 TD  305 (370)
T ss_pred             ec
Confidence            54

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=99.46  E-value=1.2e-10  Score=125.92  Aligned_cols=249  Identities=21%  Similarity=0.373  Sum_probs=169.9

Q ss_pred             CCceeeeeE-EeeCCEEEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE-CCeEEEEECCCCccc
Q 006913           35 SAFRLSKPL-IGEDGKIYACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTS  110 (626)
Q Consensus        35 ~~~~~Sspv-id~dG~IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~  110 (626)
                      ....++.|. ++.+|+||+++ ++.++++|. +|+.+|.............|....+|+||+++ ++.++++|..++.  
T Consensus        55 ~~~~~~~~~~~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~--  132 (370)
T COG1520          55 GGGIYAGPAPADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGT--  132 (370)
T ss_pred             ccceEeccccEeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCc--
Confidence            446788884 77999999997 567999999 88889987664311245567776799999999 4559999997664  


Q ss_pred             cceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccc
Q 006913          111 ESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSV  189 (626)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~ss  189 (626)
                         ..|.+....    . ..+...+...++.+|+++.++-++++|.+ |+.+|.++.... +.           ..+..+
T Consensus       133 ---~~W~~~~~~----~-~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~-~~-----------~~~~~~  192 (370)
T COG1520         133 ---LVWSRNVGG----S-PYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAP-LS-----------LSIYGS  192 (370)
T ss_pred             ---EEEEEecCC----C-eEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCc-cc-----------cccccC
Confidence               356543321    0 23444566788999999877889999986 999998622100 01           112244


Q ss_pred             eEEEcCCCeEEEEcC--CCeEEEEeCCCCeEEEEEc----CCCC-----CcceeeeeecCCeEEEEEcCCCEEEEEECCC
Q 006913          190 PVIDQCEGSIYISNT--QGELYSLSAHSPYFNWIQD----LSSF-----DKAFTLTPGNNGYLYVTIPVRALVLALDTSS  258 (626)
Q Consensus       190 pviD~~dG~LwIGT~--~GgL~~ld~~tg~~~w~~~----~~s~-----~~v~sI~~D~dG~LwVGT~~gG~l~alD~~t  258 (626)
                      +.+.  ++.+|+++.  ++.++++|+++|.+.|...    .+..     ..+..-.+..++.+|.+.. ++.++++|..+
T Consensus       193 ~~~~--~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~-~g~~~~l~~~~  269 (370)
T COG1520         193 PAIA--SGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSY-GGKLLCLDADT  269 (370)
T ss_pred             ceee--cceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEec-CCeEEEEEcCC
Confidence            5543  789999987  5679999999999999842    2211     0111122344667777774 46799999999


Q ss_pred             CcEEEEEecC---CCCCceeeEEEeeCCeEEEEEcC------CeEEEEcC-CCCE--EEEee
Q 006913          259 GNILWHKSVG---PLGSAEYAPVVDSNGWISVGSLD------GLLYSFSP-SGVL--NKFSK  308 (626)
Q Consensus       259 G~~~w~~~~~---~l~~~~sspvvD~dG~IWVGT~~------gGLy~~d~-~g~~--~~~~~  308 (626)
                      |+..|.+...   .............+|.++++...      +.+++++. .+..  .|+..
T Consensus       270 G~~~W~~~~~~~~~~~~~~~~~~~~~dG~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~w~~~  331 (370)
T COG1520         270 GELIWSFPAGGSVQGSGLYTTPVAGADGKVYIGFTDNDGRGSGSLYALADVPGGTLLKWSYP  331 (370)
T ss_pred             CceEEEEecccEeccCCeeEEeecCCCccEEEEEeccccccccceEEEeccCCCeeEEEEEe
Confidence            9999998774   11223444455568999998742      45788886 4555  67655

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=99.41  E-value=7.9e-12  Score=135.66  Aligned_cols=271  Identities=16%  Similarity=0.152  Sum_probs=161.9

Q ss_pred             ceeeeeEEeeCCEEEEEeCCcEEEEcCCCCEEEEEeCCC---CCCcccCeEEecCCeEEEEECCeEEEEECCCCccccce
Q 006913           37 FRLSKPLIGEDGKIYACSEKTLFAFESNGTIAWSLDLDF---TCNIGTAPVHGGTGEVYIVAENRVLKVDLLKIGTSESA  113 (626)
Q Consensus        37 ~~~Sspvid~dG~IwIgSdggL~a~d~~G~~~W~~~~~~---~~~i~~sp~iD~dG~IwVgT~ggL~~id~~~~~~~~~~  113 (626)
                      ......+.|..|++||||+.|++..+..|   |...-..   ....+.....|.+|.+|+||++|+.++....+..    
T Consensus       206 k~I~al~~d~qg~LWVGTdqGv~~~e~~G---~~~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~L----  278 (671)
T COG3292         206 KAINALIADVQGRLWVGTDQGVYLQEAEG---WRASNWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGL----  278 (671)
T ss_pred             hhHHHHHHHhcCcEEEEeccceEEEchhh---ccccccCCCCcchheeeeecccCCCEEEeecccceeEecCCCCc----
Confidence            34445566778999999999999999876   3222111   0123556677999999999999988776554421    


Q ss_pred             eEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccceEEE
Q 006913          114 TQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVID  193 (626)
Q Consensus       114 ~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD  193 (626)
                       .+  ...+. ...-..+.....|.+|.||+++.+ |+..|....   |.....++.   ..    .....+...++..+
T Consensus       279 -q~--~~~~~-~l~~S~vnsL~~D~dGsLWv~t~~-giv~~~~a~---w~~ma~in~---~d----G~v~~~~~~a~~ll  343 (671)
T COG3292         279 -QI--PLSKM-HLGVSTVNSLWLDTDGSLWVGTYG-GIVRYLTAD---WKRMAVIND---SD----GGVSQYEAVAPALL  343 (671)
T ss_pred             -cc--ccccc-CCccccccceeeccCCCEeeeccC-ceEEEecch---hhheeeeec---CC----CchhhhhccCchhc
Confidence             11  11110 111123455678999999999975 566665421   221000000   00    01111122334444


Q ss_pred             cCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEE---ecCCC
Q 006913          194 QCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHK---SVGPL  270 (626)
Q Consensus       194 ~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~---~~~~l  270 (626)
                        +..++..+..|-+...+..+|........--...+...+.|.+|.+|+|+.. .++..++.++   .|..   ..+.+
T Consensus       344 --~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~lWlgs~q-~GLsrl~n~n---~~avlde~agl~  417 (671)
T COG3292         344 --SWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRGRLWLGSMQ-NGLSRLDNKN---EWAVLDEDAGLP  417 (671)
T ss_pred             --ccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhccCCcEEEEecc-cchhhhccCC---cccccccccCCc
Confidence              5678888888888888888886644322111123455667889999999964 3555566444   3321   12222


Q ss_pred             CCceeeEEEeeCCeEEEEEcCCeEEEEcCC-CCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEEee
Q 006913          271 GSAEYAPVVDSNGWISVGSLDGLLYSFSPS-GVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLM  339 (626)
Q Consensus       271 ~~~~sspvvD~dG~IWVGT~~gGLy~~d~~-g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~t  339 (626)
                      ...++.+++|.++++||||. +||...++. ++.......  .+. ......+..|-.+.+|.+|++.+.
T Consensus       418 ss~V~aived~dnsLWIGTs-~Glvk~~pe~~~v~n~ln~--~~~-~l~~s~~~~lg~~~~g~Lw~a~g~  483 (671)
T COG3292         418 SSEVSAIVEDPDNSLWIGTS-GGLVKRDPESGRVLNLLNP--GSH-GLDGSRVEQLGLGPDGRLWLAAGS  483 (671)
T ss_pred             ccceeeeeecCCCCEEEecc-CCeEecCccccchhccccc--ccC-cCCcchhhhhccCCCCceEEEecc
Confidence            34467789999999999995 688888876 444433221  111 133344566778899999988754

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.38  E-value=3.2e-10  Score=113.71  Aligned_cols=198  Identities=25%  Similarity=0.467  Sum_probs=132.4

Q ss_pred             eCCEEEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE-CCeEEEEECCCCccccceeEEEe-cCC
Q 006913           46 EDGKIYACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSESATQVFY-GTG  121 (626)
Q Consensus        46 ~dG~IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~~-~~~  121 (626)
                      .+|.+|+++ ++.|+++|. +|+.+|++..+.  .....|.. .++.+|+++ ++.|+++|..++.     ..|.. ...
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~--~~~~~~~~-~~~~v~v~~~~~~l~~~d~~tG~-----~~W~~~~~~  106 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPG--PISGAPVV-DGGRVYVGTSDGSLYALDAKTGK-----VLWSIYLTS  106 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSS--CGGSGEEE-ETTEEEEEETTSEEEEEETTTSC-----EEEEEEE-S
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeeccc--cccceeee-cccccccccceeeeEecccCCcc-----eeeeecccc
Confidence            789999996 778999998 999999998743  23334544 568899998 6789999988876     35552 211


Q ss_pred             CCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeC-CCcEEEEECCcccccccccccccCC-CCCccccceEEEcCCCeE
Q 006913          122 SGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMT-HGQLLWSAGPVLDQLGYRQGCTKTD-VDCYFTSVPVIDQCEGSI  199 (626)
Q Consensus       122 ~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~-~G~~~w~~~~~~~~~~~~~~~~~~l-~~~~i~sspviD~~dG~L  199 (626)
                      . ... .......+...++.++++..++.|+++|+ +|+++|.+..     ..... .... ........++++  ++.|
T Consensus       107 ~-~~~-~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~-----~~~~~-~~~~~~~~~~~~~~~~~--~~~v  176 (238)
T PF13360_consen  107 S-PPA-GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV-----GEPRG-SSPISSFSDINGSPVIS--DGRV  176 (238)
T ss_dssp             S-CTC-STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES-----STT-S-S--EEEETTEEEEEECC--TTEE
T ss_pred             c-ccc-ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec-----CCCCC-CcceeeecccccceEEE--CCEE
Confidence            1 000 11112223334788999988899999997 5999998611     10000 0000 000112345555  5699


Q ss_pred             EEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEE
Q 006913          200 YISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHK  265 (626)
Q Consensus       200 wIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~  265 (626)
                      |+++.++.++++|..+++..|..+...   ........++.||+++ ..+.++++|++||++.|++
T Consensus       177 ~~~~~~g~~~~~d~~tg~~~w~~~~~~---~~~~~~~~~~~l~~~~-~~~~l~~~d~~tG~~~W~~  238 (238)
T PF13360_consen  177 YVSSGDGRVVAVDLATGEKLWSKPISG---IYSLPSVDGGTLYVTS-SDGRLYALDLKTGKVVWQQ  238 (238)
T ss_dssp             EEECCTSSEEEEETTTTEEEEEECSS----ECECEECCCTEEEEEE-TTTEEEEEETTTTEEEEEE
T ss_pred             EEEcCCCeEEEEECCCCCEEEEecCCC---ccCCceeeCCEEEEEe-CCCEEEEEECCCCCEEeEC
Confidence            999988878889999999889554222   2232334578999998 5689999999999999963

...

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=99.18  E-value=8.9e-09  Score=116.50  Aligned_cols=223  Identities=17%  Similarity=0.263  Sum_probs=143.4

Q ss_pred             CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE-CCeEEEEECCCCccccceeEEEecCCCCCCC----CCCeeEEEEEEc
Q 006913           64 NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGG----TGAIAGIAVSTS  138 (626)
Q Consensus        64 ~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~----~~~~I~s~~~d~  138 (626)
                      +.++.|.+..+......++|++. +|.||+++ .+.|+++|..+++     ..|.+........    ....+...+...
T Consensus        46 ~L~~~W~~~~g~~~g~~stPvv~-~g~vyv~s~~g~v~AlDa~TGk-----~lW~~~~~~~~~~~~~~~~~~~~rg~av~  119 (527)
T TIGR03075        46 KLQPAWTFSLGKLRGQESQPLVV-DGVMYVTTSYSRVYALDAKTGK-----ELWKYDPKLPDDVIPVMCCDVVNRGVALY  119 (527)
T ss_pred             cceEEEEEECCCCCCcccCCEEE-CCEEEEECCCCcEEEEECCCCc-----eeeEecCCCCcccccccccccccccceEE
Confidence            35678988775321245678874 68999987 7889999999986     3565543211000    000111112345


Q ss_pred             CCeEEEEEcCCeEEEEeC-CCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcC------CCeEEEE
Q 006913          139 SSSVYINVKGRALFAFMT-HGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT------QGELYSL  211 (626)
Q Consensus       139 dG~LwIgT~~gGL~a~d~-~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~------~GgL~~l  211 (626)
                      +++||+++.++.|+++|. +|+++|....  ...      ..   ...+.++|++.  ++.|+++..      +|.|+++
T Consensus       120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~--~~~------~~---~~~~tssP~v~--~g~Vivg~~~~~~~~~G~v~Al  186 (527)
T TIGR03075       120 DGKVFFGTLDARLVALDAKTGKVVWSKKN--GDY------KA---GYTITAAPLVV--KGKVITGISGGEFGVRGYVTAY  186 (527)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeeccc--ccc------cc---cccccCCcEEE--CCEEEEeecccccCCCcEEEEE
Confidence            789999999999999998 5999998521  000      00   11234668887  789999864      5789999


Q ss_pred             eCCCCeEEEEEcCCC-C------------------------------Ccceeeeeec-CCeEEEEEcC------------
Q 006913          212 SAHSPYFNWIQDLSS-F------------------------------DKAFTLTPGN-NGYLYVTIPV------------  247 (626)
Q Consensus       212 d~~tg~~~w~~~~~s-~------------------------------~~v~sI~~D~-dG~LwVGT~~------------  247 (626)
                      |.++|+..|..+... .                              ..-..+..|. .|.||+++..            
T Consensus       187 D~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gd  266 (527)
T TIGR03075       187 DAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGD  266 (527)
T ss_pred             ECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCC
Confidence            999999999854311 0                              0001235563 6789999822            


Q ss_pred             ---CCEEEEEECCCCcEEEEEecCCCC----Cc-eeeEEEe--eCCe----EEEEEcCCeEEEEcCC-CCEEE
Q 006913          248 ---RALVLALDTSSGNILWHKSVGPLG----SA-EYAPVVD--SNGW----ISVGSLDGLLYSFSPS-GVLNK  305 (626)
Q Consensus       248 ---gG~l~alD~~tG~~~w~~~~~~l~----~~-~sspvvD--~dG~----IWVGT~~gGLy~~d~~-g~~~~  305 (626)
                         ...++++|.+||++.|+++..+..    .. ...+++|  .+|.    |-.++.+|-+|.+|+. |+.++
T Consensus       267 nl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~  339 (527)
T TIGR03075       267 NLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS  339 (527)
T ss_pred             CccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence               126899999999999998654311    01 1112333  3554    5578889999999985 87764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=99.07  E-value=3.5e-08  Score=115.37  Aligned_cols=221  Identities=19%  Similarity=0.254  Sum_probs=137.5

Q ss_pred             ceeeeeEEeeCCEEEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCc------------c------------cCeEEecCCe
Q 006913           37 FRLSKPLIGEDGKIYACS-EKTLFAFES-NGTIAWSLDLDFTCNI------------G------------TAPVHGGTGE   90 (626)
Q Consensus        37 ~~~Sspvid~dG~IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i------------~------------~sp~iD~dG~   90 (626)
                      ...++|++ .+|.||+|+ .+.++++|. +|+.+|++........            .            .+|.. .+++
T Consensus       185 ~~e~TPlv-vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~-~~~r  262 (764)
T TIGR03074       185 TFQATPLK-VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPAD-CARR  262 (764)
T ss_pred             ccccCCEE-ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccc-cCCE
Confidence            45788999 789999998 578999998 9999999876421000            0            01112 3468


Q ss_pred             EEEEE-CCeEEEEECCCCccccceeEEEecCCC---CCCC-----CC-CeeEEEEEEcCCeEEEEEc----------CCe
Q 006913           91 VYIVA-ENRVLKVDLLKIGTSESATQVFYGTGS---GKGG-----TG-AIAGIAVSTSSSSVYINVK----------GRA  150 (626)
Q Consensus        91 IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~---~~~~-----~~-~~I~s~~~d~dG~LwIgT~----------~gG  150 (626)
                      ||+++ ++.|+++|..+++.     .|.++...   +...     .+ -.+.+.+...++.|++|..          .+-
T Consensus       263 V~~~T~Dg~LiALDA~TGk~-----~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~  337 (764)
T TIGR03074       263 IILPTSDARLIALDADTGKL-----CEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGV  337 (764)
T ss_pred             EEEecCCCeEEEEECCCCCE-----EEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcE
Confidence            99998 89999999999863     45443211   1100     00 1123445556889999853          356


Q ss_pred             EEEEeC-CCcEEEEECCcccccc--cccccccCCCCCccccceEEEcCCCeEEEEcC------------------CCeEE
Q 006913          151 LFAFMT-HGQLLWSAGPVLDQLG--YRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT------------------QGELY  209 (626)
Q Consensus       151 L~a~d~-~G~~~w~~~~~~~~~~--~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~------------------~GgL~  209 (626)
                      |.+||. +|+++|.+...-....  ...+..-.....+....+.+|...|.+|+++.                  .+.|+
T Consensus       338 I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slv  417 (764)
T TIGR03074       338 IRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLV  417 (764)
T ss_pred             EEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEE
Confidence            899997 5999998632100000  00000000011222345677765678888663                  35789


Q ss_pred             EEeCCCCeEEEEEcCCC-----CCcc-eeeeee---cCC----eEEEEEcCCCEEEEEECCCCcEEEEE
Q 006913          210 SLSAHSPYFNWIQDLSS-----FDKA-FTLTPG---NNG----YLYVTIPVRALVLALDTSSGNILWHK  265 (626)
Q Consensus       210 ~ld~~tg~~~w~~~~~s-----~~~v-~sI~~D---~dG----~LwVGT~~gG~l~alD~~tG~~~w~~  265 (626)
                      ++|.+||+++|.+....     .+.. ..+..|   .+|    .+++++ .+|.++++|++||+.+|..
T Consensus       418 ALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~-K~G~~~vlDr~tG~~l~~~  485 (764)
T TIGR03074       418 ALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPT-KQGQIYVLDRRTGEPIVPV  485 (764)
T ss_pred             EEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEEC-CCCEEEEEECCCCCEEeec
Confidence            99999999999875421     1111 111222   266    577777 5689999999999999964

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.07  E-value=2.1e-08  Score=100.32  Aligned_cols=206  Identities=19%  Similarity=0.223  Sum_probs=137.2

Q ss_pred             EEEEeCCCCCCcccCeEE---ecCCeEEEEE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEE
Q 006913           68 AWSLDLDFTCNIGTAPVH---GGTGEVYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVY  143 (626)
Q Consensus        68 ~W~~~~~~~~~i~~sp~i---D~dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~Lw  143 (626)
                      +|..++..  -+..+|++   |..-.+++|+ .+.+.++|+.+++.     .|..       ..+..+.......++.+.
T Consensus         2 rW~vd~~k--CVDaspLVV~~dskT~v~igSHs~~~~avd~~sG~~-----~We~-------ilg~RiE~sa~vvgdfVV   67 (354)
T KOG4649|consen    2 RWAVDLRK--CVDASPLVVCNDSKTLVVIGSHSGIVIAVDPQSGNL-----IWEA-------ILGVRIECSAIVVGDFVV   67 (354)
T ss_pred             ceeccchh--hccCCcEEEecCCceEEEEecCCceEEEecCCCCcE-----Eeeh-------hhCceeeeeeEEECCEEE
Confidence            46555432  12334432   3345688888 78899999999853     4432       123344444455677899


Q ss_pred             EEEcCCeEEEEeC-CCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEE
Q 006913          144 INVKGRALFAFMT-HGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQ  222 (626)
Q Consensus       144 IgT~~gGL~a~d~-~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~  222 (626)
                      +|-+.++||.++- +|...|.+..          +      ..+...+..|...|-||+|+.++.+|++|+++..-.|..
T Consensus        68 ~GCy~g~lYfl~~~tGs~~w~f~~----------~------~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyks  131 (354)
T KOG4649|consen   68 LGCYSGGLYFLCVKTGSQIWNFVI----------L------ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS  131 (354)
T ss_pred             EEEccCcEEEEEecchhheeeeee----------h------hhhccceEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence            9999999999996 5988897511          0      012234556654788999999999999999998888875


Q ss_pred             cCCCCC-cceeeeeecCCeEEEEEcCCCEEEEEECCCC--cEEEEEecCCCCCceeeEEEeeCCeEEEEEcCCeEEEEcC
Q 006913          223 DLSSFD-KAFTLTPGNNGYLYVTIPVRALVLALDTSSG--NILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSP  299 (626)
Q Consensus       223 ~~~s~~-~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG--~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~  299 (626)
                      .-++.. ..+.+.+ .++.||+++. +|.+.++.++++  +.+|.....  +.++.+|..- .-.+-++|-+|-|.+|++
T Consensus       132 kcgG~~f~sP~i~~-g~~sly~a~t-~G~vlavt~~~~~~~~~w~~~~~--~PiF~splcv-~~sv~i~~VdG~l~~f~~  206 (354)
T KOG4649|consen  132 KCGGGTFVSPVIAP-GDGSLYAAIT-AGAVLAVTKNPYSSTEFWAATRF--GPIFASPLCV-GSSVIITTVDGVLTSFDE  206 (354)
T ss_pred             ccCCceeccceecC-CCceEEEEec-cceEEEEccCCCCcceehhhhcC--CccccCceec-cceEEEEEeccEEEEEcC
Confidence            443311 1223333 2889999985 578999988887  567754333  2245555433 346778888999999999


Q ss_pred             CCCEEEEee
Q 006913          300 SGVLNKFSK  308 (626)
Q Consensus       300 ~g~~~~~~~  308 (626)
                      .|+..|.+.
T Consensus       207 sG~qvwr~~  215 (354)
T KOG4649|consen  207 SGRQVWRPA  215 (354)
T ss_pred             CCcEEEeec
Confidence            899888554

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=98.97  E-value=2.5e-07  Score=108.34  Aligned_cols=234  Identities=16%  Similarity=0.227  Sum_probs=143.7

Q ss_pred             CCEEEEEeCCCC--------CCcccCeEEecCCeEEEEE-CCeEEEEECCCCccccceeEEEecCCCCCCC-----CCCe
Q 006913           65 GTIAWSLDLDFT--------CNIGTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGG-----TGAI  130 (626)
Q Consensus        65 G~~~W~~~~~~~--------~~i~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~-----~~~~  130 (626)
                      -+..|.+..+..        .....+|++ .+|.||+++ .+.|+++|..+++     ..|.+........     ...-
T Consensus       164 L~~aWt~~tGd~~~~~~~~~~~~e~TPlv-vgg~lYv~t~~~~V~ALDa~TGk-----~lW~~d~~~~~~~~~~~~~cRG  237 (764)
T TIGR03074       164 LKVAWTYHTGDLKTPDDPGEATFQATPLK-VGDTLYLCTPHNKVIALDAATGK-----EKWKFDPKLKTEAGRQHQTCRG  237 (764)
T ss_pred             ceEEEEEECCCccccccccccccccCCEE-ECCEEEEECCCCeEEEEECCCCc-----EEEEEcCCCCcccccccccccc
Confidence            467799876421        113456777 468999998 7899999999986     4666554321100     0000


Q ss_pred             eEE--------------EEEEcCCeEEEEEcCCeEEEEeC-CCcEEEEECCcccccccccccccCC-CCCccccceEEEc
Q 006913          131 AGI--------------AVSTSSSSVYINVKGRALFAFMT-HGQLLWSAGPVLDQLGYRQGCTKTD-VDCYFTSVPVIDQ  194 (626)
Q Consensus       131 I~s--------------~~~d~dG~LwIgT~~gGL~a~d~-~G~~~w~~~~~~~~~~~~~~~~~~l-~~~~i~sspviD~  194 (626)
                      +..              .+...+++||+++.++.|+++|. +|+.+|.++..- ......+..... ....+.++|++. 
T Consensus       238 vay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G-~vdl~~~~g~~~~g~~~~ts~P~V~-  315 (764)
T TIGR03074       238 VSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIALDADTGKLCEDFGNNG-TVDLTAGMGTTPPGYYYPTSPPLVA-  315 (764)
T ss_pred             eEEecCCcccccccccccccccCCEEEEecCCCeEEEEECCCCCEEEEecCCC-ceeeecccCcCCCcccccccCCEEE-
Confidence            000              01124569999999999999997 499999862200 000000000000 011234678887 


Q ss_pred             CCCeEEEEcC----------CCeEEEEeCCCCeEEEEEcCCC--------C--------Ccc-eeeeee-cCCeEEEEEc
Q 006913          195 CEGSIYISNT----------QGELYSLSAHSPYFNWIQDLSS--------F--------DKA-FTLTPG-NNGYLYVTIP  246 (626)
Q Consensus       195 ~dG~LwIGT~----------~GgL~~ld~~tg~~~w~~~~~s--------~--------~~v-~sI~~D-~dG~LwVGT~  246 (626)
                       ++.|++|..          .|.|++||.++|++.|..+...        .        ..+ ..+..| ..|.+|+++.
T Consensus       316 -~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptG  394 (764)
T TIGR03074       316 -GTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMG  394 (764)
T ss_pred             -CCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCC
Confidence             789999853          5779999999999999865320        0        000 123444 3467888651


Q ss_pred             -----------------CCCEEEEEECCCCcEEEEEecCCC---C-CceeeEE-Ee---eCC----eEEEEEcCCeEEEE
Q 006913          247 -----------------VRALVLALDTSSGNILWHKSVGPL---G-SAEYAPV-VD---SNG----WISVGSLDGLLYSF  297 (626)
Q Consensus       247 -----------------~gG~l~alD~~tG~~~w~~~~~~l---~-~~~sspv-vD---~dG----~IWVGT~~gGLy~~  297 (626)
                                       ..+.++++|..||+..|+++..+.   . .....|+ +|   .+|    .|+.++.+|.+|++
T Consensus       395 n~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vl  474 (764)
T TIGR03074       395 NQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVL  474 (764)
T ss_pred             CccccccCCccccCcccccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEE
Confidence                             124688999999999998865320   0 1111122 22   156    79999999999999


Q ss_pred             cCC-CCEEEEe
Q 006913          298 SPS-GVLNKFS  307 (626)
Q Consensus       298 d~~-g~~~~~~  307 (626)
                      |+. |+.+|-.
T Consensus       475 Dr~tG~~l~~~  485 (764)
T TIGR03074       475 DRRTGEPIVPV  485 (764)
T ss_pred             ECCCCCEEeec
Confidence            984 8988853

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.92  E-value=1.4e-06  Score=88.59  Aligned_cols=221  Identities=14%  Similarity=0.183  Sum_probs=132.3

Q ss_pred             eeeEEee-CCEEEEEe--CCcEEEEcCCCCEEEEEeCCCCCCcccCeEEe-cCCeEEEEECCeEEEEECCCCccccceeE
Q 006913           40 SKPLIGE-DGKIYACS--EKTLFAFESNGTIAWSLDLDFTCNIGTAPVHG-GTGEVYIVAENRVLKVDLLKIGTSESATQ  115 (626)
Q Consensus        40 Sspvid~-dG~IwIgS--dggL~a~d~~G~~~W~~~~~~~~~i~~sp~iD-~dG~IwVgT~ggL~~id~~~~~~~~~~~~  115 (626)
                      -+|+.+. +|.||+..  .+.|++++..+.....+..+.    ..+..++ .+|.+|++..+++..+|+.++..     .
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~-----~   73 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPDGRLYVADSGGIAVVDPDTGKV-----T   73 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS----EEEEEEECTTSEEEEEETTCEEEEETTTTEE-----E
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC----CceEEEEccCCEEEEEEcCceEEEecCCCcE-----E
Confidence            3678875 89998876  567999998444332233332    2344556 67999999888888889887632     2


Q ss_pred             EEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcC---------CeEEEEeCCCcEEEEECCcccccccccccccCCCCCcc
Q 006913          116 VFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKG---------RALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYF  186 (626)
Q Consensus       116 ~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~---------gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i  186 (626)
                      ....... .............+.+|+||+++..         +.|++++++++......    .+.             .
T Consensus        74 ~~~~~~~-~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~----~~~-------------~  135 (246)
T PF08450_consen   74 VLADLPD-GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVAD----GLG-------------F  135 (246)
T ss_dssp             EEEEEET-TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEE----EES-------------S
T ss_pred             EEeeccC-CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEec----Ccc-------------c
Confidence            2221110 0001223445677899999999753         45899998865433220    111             1


Q ss_pred             ccceEEEcCCCeEEEEc-CCCeEEEEeCC--CCeEEEE---EcCCC-CCcceeeeeecCCeEEEEEcCCCEEEEEECCCC
Q 006913          187 TSVPVIDQCEGSIYISN-TQGELYSLSAH--SPYFNWI---QDLSS-FDKAFTLTPGNNGYLYVTIPVRALVLALDTSSG  259 (626)
Q Consensus       187 ~sspviD~~dG~LwIGT-~~GgL~~ld~~--tg~~~w~---~~~~s-~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG  259 (626)
                      ..-+++++.+..||+.. ..+.|++++.+  ++.+...   .+... ....-.+++|.+|+|||+...++.+..+++. |
T Consensus       136 pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G  214 (246)
T PF08450_consen  136 PNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G  214 (246)
T ss_dssp             EEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S
T ss_pred             ccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c
Confidence            12356665244688764 46779988875  3322211   12222 1124468899999999998778899999975 8


Q ss_pred             cEEEEEecCCCCCceeeEEEe--eCCeEEEEEc
Q 006913          260 NILWHKSVGPLGSAEYAPVVD--SNGWISVGSL  290 (626)
Q Consensus       260 ~~~w~~~~~~l~~~~sspvvD--~dG~IWVGT~  290 (626)
                      +.+-....+.  ...+++++.  ..++|||.|.
T Consensus       215 ~~~~~i~~p~--~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  215 KLLREIELPV--PRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             CEEEEEE-SS--SSEEEEEEESTTSSEEEEEEB
T ss_pred             cEEEEEcCCC--CCEEEEEEECCCCCEEEEEeC
Confidence            8776655541  234556663  3478998873

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=98.92  E-value=3.4e-07  Score=92.62  Aligned_cols=231  Identities=13%  Similarity=0.138  Sum_probs=149.0

Q ss_pred             EEeeCCEEEEEeC--CcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE-CCeEEEEECCCCccccceeEEEe
Q 006913           43 LIGEDGKIYACSE--KTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSESATQVFY  118 (626)
Q Consensus        43 vid~dG~IwIgSd--ggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~~  118 (626)
                      ..+.||.+|.+.+  +.+=.+|+ +|+.. .++++.. ..-..++++.+|..|+.. ..+|.++++++...    ..|..
T Consensus        68 apapdG~VWft~qg~gaiGhLdP~tGev~-~ypLg~G-a~Phgiv~gpdg~~Witd~~~aI~R~dpkt~ev----t~f~l  141 (353)
T COG4257          68 APAPDGAVWFTAQGTGAIGHLDPATGEVE-TYPLGSG-ASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEV----TRFPL  141 (353)
T ss_pred             ccCCCCceEEecCccccceecCCCCCceE-EEecCCC-CCCceEEECCCCCeeEecCcceeEEecCcccce----EEeec
Confidence            4456999999874  46889998 88865 3566532 233467788999999986 44899999987532    12222


Q ss_pred             cCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEE-EEeCC-CcE-EEEECCcccccccccccccCCCCCccccceEEEcC
Q 006913          119 GTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALF-AFMTH-GQL-LWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQC  195 (626)
Q Consensus       119 ~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~-a~d~~-G~~-~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~  195 (626)
                      ..    ..........+.|..|+||+... .|.+ .+|+. +.+ +|..         .+    ...    .+-++... 
T Consensus       142 p~----~~a~~nlet~vfD~~G~lWFt~q-~G~yGrLdPa~~~i~vfpa---------Pq----G~g----pyGi~atp-  198 (353)
T COG4257         142 PL----EHADANLETAVFDPWGNLWFTGQ-IGAYGRLDPARNVISVFPA---------PQ----GGG----PYGICATP-  198 (353)
T ss_pred             cc----ccCCCcccceeeCCCccEEEeec-cccceecCcccCceeeecc---------CC----CCC----CcceEECC-
Confidence            21    11123455677899999999654 4554 67874 332 2221         11    100    12245554 


Q ss_pred             CCeEEEEcC-CCeEEEEeCCCCeEEEEEcC-CCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEE-EecCCCCC
Q 006913          196 EGSIYISNT-QGELYSLSAHSPYFNWIQDL-SSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWH-KSVGPLGS  272 (626)
Q Consensus       196 dG~LwIGT~-~GgL~~ld~~tg~~~w~~~~-~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~-~~~~~l~~  272 (626)
                      +|.||+... .+.|..+|+.++.-.-.... ........+..|.-|++|+.+...+.++.+|+.+-.  |. +.++....
T Consensus       199 dGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s--W~eypLPgs~a  276 (353)
T COG4257         199 DGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS--WIEYPLPGSKA  276 (353)
T ss_pred             CCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc--ceeeeCCCCCC
Confidence            899999865 45688899988754333221 111224556778899999999888899999986543  64 34443222


Q ss_pred             ceeeEEEeeCCeEEEEEc-CCeEEEEcCCCCEE
Q 006913          273 AEYAPVVDSNGWISVGSL-DGLLYSFSPSGVLN  304 (626)
Q Consensus       273 ~~sspvvD~dG~IWVGT~-~gGLy~~d~~g~~~  304 (626)
                      .-.++.+|..|++|.... .+.|.+||+....+
T Consensus       277 rpys~rVD~~grVW~sea~agai~rfdpeta~f  309 (353)
T COG4257         277 RPYSMRVDRHGRVWLSEADAGAIGRFDPETARF  309 (353)
T ss_pred             CcceeeeccCCcEEeeccccCceeecCcccceE
Confidence            345688998999999543 46899999865433

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.91  E-value=6.1e-07  Score=90.04  Aligned_cols=240  Identities=15%  Similarity=0.180  Sum_probs=146.3

Q ss_pred             ccccccCCceeeeeEEeeC-CEEEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEec-CCeEEEEE-CCeEEEEE
Q 006913           29 KVPYRRSAFRLSKPLIGED-GKIYACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGG-TGEVYIVA-ENRVLKVD  103 (626)
Q Consensus        29 ~~~~~~~~~~~Sspvid~d-G~IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~-dG~IwVgT-~ggL~~id  103 (626)
                      -|.+.--+.+.+.|.+|.+ |-||+|+ ++.+|++|. +-.-+|+...+.  ....+|+++. ++.||+++ .|.|.+.+
T Consensus        86 ~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG--~~f~sP~i~~g~~sly~a~t~G~vlavt  163 (354)
T KOG4649|consen   86 IWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGG--GTFVSPVIAPGDGSLYAAITAGAVLAVT  163 (354)
T ss_pred             eeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCC--ceeccceecCCCceEEEEeccceEEEEc
Confidence            3455667788899999864 6789998 778999998 555677765554  4667888887 89999997 78899999


Q ss_pred             CCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccccccccccCCCC
Q 006913          104 LLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVD  183 (626)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~  183 (626)
                      +++..+   ...|.+..      .+++.+.+ .--...+.+++-++.|.++++.|+++|++.+                .
T Consensus       164 ~~~~~~---~~~w~~~~------~~PiF~sp-lcv~~sv~i~~VdG~l~~f~~sG~qvwr~~t----------------~  217 (354)
T KOG4649|consen  164 KNPYSS---TEFWAATR------FGPIFASP-LCVGSSVIITTVDGVLTSFDESGRQVWRPAT----------------K  217 (354)
T ss_pred             cCCCCc---ceehhhhc------CCccccCc-eeccceEEEEEeccEEEEEcCCCcEEEeecC----------------C
Confidence            887532   11232211      11222222 2223456677888889999988999997521                0


Q ss_pred             CccccceEEE-cCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCC-----------C---------CcceeeeeecCCeEE
Q 006913          184 CYFTSVPVID-QCEGSIYISNTQGELYSLSAHSPYFNWIQDLSS-----------F---------DKAFTLTPGNNGYLY  242 (626)
Q Consensus       184 ~~i~sspviD-~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s-----------~---------~~v~sI~~D~dG~Lw  242 (626)
                      ..+...|... +..+.|..+..+ -+++.-+..|.+.|....+.           +         +.... ....||++|
T Consensus       218 GpIf~~Pc~s~Ps~q~i~~~~~~-Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~l~F~~h~~~~S~~~ll~-~~s~dgkv~  295 (354)
T KOG4649|consen  218 GPIFMEPCESRPSCQQISLENEN-CFCAPLPIAGHLLWATQSGTTLHVYLSPKLRFDLHSPGISYPKLLR-RSSGDGKVM  295 (354)
T ss_pred             CceecccccCCCcceEEEEecCC-eEEEeccccceEEEEecCCcEEEEEeCcccceeccCCCCcchhhhh-hhcCCCcEE
Confidence            1122233321 113456666544 45555555578888644321           0         00000 112467777


Q ss_pred             EEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEEEEEcCCeEEEEcCC
Q 006913          243 VTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPS  300 (626)
Q Consensus       243 VGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~  300 (626)
                      |-... -.+...+..+|+........-.+.++++|++- +|+|.||..++.|+++|.+
T Consensus       296 il~~~-~sl~~~~s~~g~lq~~~~~el~~eIFsSPvii-~grl~igcRDdYv~cldl~  351 (354)
T KOG4649|consen  296 ILMTS-KSLAEISSNGGELQNLEAIELSNEIFSSPVII-DGRLLIGCRDDYVRCLDLD  351 (354)
T ss_pred             EEEec-ccccccccCCCccceEEEeecCcccccCCeEE-ccEEEEEEccCeEEEEecc
Confidence            76322 23444455556554333222113567888876 6999999999999999864

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.90  E-value=3.2e-06  Score=85.99  Aligned_cols=219  Identities=18%  Similarity=0.228  Sum_probs=129.9

Q ss_pred             CeEEec-CCeEEEEE--CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC-
Q 006913           82 APVHGG-TGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH-  157 (626)
Q Consensus        82 sp~iD~-dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~-  157 (626)
                      +|+.|. +|.||+..  .+.|+++++.++..     .. +..       ....+..+...+|.+|++.. +++..+|+. 
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~-----~~-~~~-------~~~~G~~~~~~~g~l~v~~~-~~~~~~d~~~   69 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV-----EV-IDL-------PGPNGMAFDRPDGRLYVADS-GGIAVVDPDT   69 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEE-----EE-EES-------SSEEEEEEECTTSEEEEEET-TCEEEEETTT
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeE-----EE-Eec-------CCCceEEEEccCCEEEEEEc-CceEEEecCC
Confidence            466775 88998886  68899999988631     11 111       11444444447899999875 577778975 


Q ss_pred             CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCC---------CeEEEEeCCCCeEEEEEcCCCCC
Q 006913          158 GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQ---------GELYSLSAHSPYFNWIQDLSSFD  228 (626)
Q Consensus       158 G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~---------GgL~~ld~~tg~~~w~~~~~s~~  228 (626)
                      |+.......       ..+. ..   .......++|+ +|+||+++..         |.|++++++ ++......  ...
T Consensus        70 g~~~~~~~~-------~~~~-~~---~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~  134 (246)
T PF08450_consen   70 GKVTVLADL-------PDGG-VP---FNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLG  134 (246)
T ss_dssp             TEEEEEEEE-------ETTC-SC---TEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EES
T ss_pred             CcEEEEeec-------cCCC-cc---cCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEec--Ccc
Confidence            654332210       0000 00   01123467886 9999998752         679999998 56543322  122


Q ss_pred             cceeeeeecCC-eEEEEEcCCCEEEEEECC--CCcEEEE---EecCCCCCceeeEEEeeCCeEEEEEc-CCeEEEEcCCC
Q 006913          229 KAFTLTPGNNG-YLYVTIPVRALVLALDTS--SGNILWH---KSVGPLGSAEYAPVVDSNGWISVGSL-DGLLYSFSPSG  301 (626)
Q Consensus       229 ~v~sI~~D~dG-~LwVGT~~gG~l~alD~~--tG~~~w~---~~~~~l~~~~sspvvD~dG~IWVGT~-~gGLy~~d~~g  301 (626)
                      ....|+.+.|| .||+.....+.++.++..  ++.+...   ..........-.+++|.+|+||++.. .+.|++++++|
T Consensus       135 ~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G  214 (246)
T PF08450_consen  135 FPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDG  214 (246)
T ss_dssp             SEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTS
T ss_pred             cccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCc
Confidence            34467777777 588887667788888764  3322211   12221111345688999999999975 67999999999


Q ss_pred             CEEEEeeccCCCCccccCceEEEEEE--ecCCcEEEEE
Q 006913          302 VLNKFSKSDTSDSVIQSSPYWFHLLG--PSIGLKAILC  337 (626)
Q Consensus       302 ~~~~~~~~~~~~~~ilssp~V~~Il~--DsdG~IwI~T  337 (626)
                      ++......        +.+.+.++..  +..+.|||-|
T Consensus       215 ~~~~~i~~--------p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  215 KLLREIEL--------PVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             CEEEEEE---------SSSSEEEEEEESTTSSEEEEEE
T ss_pred             cEEEEEcC--------CCCCEEEEEEECCCCCEEEEEe
Confidence            87765541        2122333433  2457787644

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=98.80  E-value=6.6e-07  Score=90.54  Aligned_cols=230  Identities=14%  Similarity=0.109  Sum_probs=141.8

Q ss_pred             EEecCCeEEEEE--CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC-Cc-
Q 006913           84 VHGGTGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH-GQ-  159 (626)
Q Consensus        84 ~iD~dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~-G~-  159 (626)
                      ..+.||.+|...  .+-+=.+|+.++.-    ..+-++.       +..-..++...+|..||.....+|.++|++ .+ 
T Consensus        68 apapdG~VWft~qg~gaiGhLdP~tGev----~~ypLg~-------Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~ev  136 (353)
T COG4257          68 APAPDGAVWFTAQGTGAIGHLDPATGEV----ETYPLGS-------GASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEV  136 (353)
T ss_pred             ccCCCCceEEecCccccceecCCCCCce----EEEecCC-------CCCCceEEECCCCCeeEecCcceeEEecCcccce
Confidence            346789999987  35677889998741    2222222       222234567899999998766689999984 43 


Q ss_pred             EEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCC
Q 006913          160 LLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNG  239 (626)
Q Consensus       160 ~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG  239 (626)
                      ..|..       +      ....+.++ .+++.|. .|+||+....|---+||+..+.+.-+. .+.....+.|+...||
T Consensus       137 t~f~l-------p------~~~a~~nl-et~vfD~-~G~lWFt~q~G~yGrLdPa~~~i~vfp-aPqG~gpyGi~atpdG  200 (353)
T COG4257         137 TRFPL-------P------LEHADANL-ETAVFDP-WGNLWFTGQIGAYGRLDPARNVISVFP-APQGGGPYGICATPDG  200 (353)
T ss_pred             EEeec-------c------cccCCCcc-cceeeCC-CccEEEeeccccceecCcccCceeeec-cCCCCCCcceEECCCC
Confidence            33432       1      01112233 4578886 999999766554448899887665432 1111123456777899


Q ss_pred             eEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEEEEEcC-CeEEEEcCCCCEEEEeeccCCCCcccc
Q 006913          240 YLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLD-GLLYSFSPSGVLNKFSKSDTSDSVIQS  318 (626)
Q Consensus       240 ~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~~-gGLy~~d~~g~~~~~~~~~~~~~~ils  318 (626)
                      .+|+++..+..+..+|+.++...-....+.+..-...+-.|+.|++|+.|.+ +.|++||+.... |..-..+.     +
T Consensus       201 svwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPg-----s  274 (353)
T COG4257         201 SVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPG-----S  274 (353)
T ss_pred             cEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCC-----C
Confidence            9999987777888899988854322111111111233556888999999875 579999997544 43221111     2


Q ss_pred             CceEEEEEEecCCcEEEEEeeecCeeEEe
Q 006913          319 SPYWFHLLGPSIGLKAILCLMVVGQFSSL  347 (626)
Q Consensus       319 sp~V~~Il~DsdG~IwI~T~t~~Ggl~~~  347 (626)
                      .+.-+++.+|..|+||+.- -..|.|..+
T Consensus       275 ~arpys~rVD~~grVW~se-a~agai~rf  302 (353)
T COG4257         275 KARPYSMRVDRHGRVWLSE-ADAGAIGRF  302 (353)
T ss_pred             CCCcceeeeccCCcEEeec-cccCceeec
Confidence            2333578999999999532 223444443

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.01  E-value=0.003  Score=66.97  Aligned_cols=197  Identities=20%  Similarity=0.240  Sum_probs=109.1

Q ss_pred             cCeEEecC-CeEEEEE--CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC
Q 006913           81 TAPVHGGT-GEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH  157 (626)
Q Consensus        81 ~sp~iD~d-G~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~  157 (626)
                      -+|+.+.+ +.||...  .+.|+++++.++..    ..+..+        ...-.....+.++.|+...  .|++.++.+
T Consensus        28 EgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~----~~~~~p--------~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~   93 (307)
T COG3386          28 EGPVWDPDRGALLWVDILGGRIHRLDPETGKK----RVFPSP--------GGFSSGALIDAGGRLIACE--HGVRLLDPD   93 (307)
T ss_pred             cCccCcCCCCEEEEEeCCCCeEEEecCCcCce----EEEECC--------CCcccceeecCCCeEEEEc--cccEEEecc
Confidence            34555554 4466654  78999999986631    122211        1122334556777777653  567777753


Q ss_pred             -CcE-EEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCC------------CeEEEEeCCCCeEEEEEc
Q 006913          158 -GQL-LWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQ------------GELYSLSAHSPYFNWIQD  223 (626)
Q Consensus       158 -G~~-~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~------------GgL~~ld~~tg~~~w~~~  223 (626)
                       +.. .-....       ..+.+.+     ......+++ +|.+|+|+..            |.||++++.++...-..+
T Consensus        94 ~~~~~t~~~~~-------~~~~~~~-----r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~  160 (307)
T COG3386          94 TGGKITLLAEP-------EDGLPLN-----RPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDD  160 (307)
T ss_pred             CCceeEEeccc-------cCCCCcC-----CCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecC
Confidence             443 111111       0000111     112356776 8999999866            348999986543332211


Q ss_pred             CCCCCcceeeeeecCC-eEEEEEcCCCEEEEEECC--CCcEE----EE-EecCCCCCceeeEEEeeCCeEEEEEcCC--e
Q 006913          224 LSSFDKAFTLTPGNNG-YLYVTIPVRALVLALDTS--SGNIL----WH-KSVGPLGSAEYAPVVDSNGWISVGSLDG--L  293 (626)
Q Consensus       224 ~~s~~~v~sI~~D~dG-~LwVGT~~gG~l~alD~~--tG~~~----w~-~~~~~l~~~~sspvvD~dG~IWVGT~~g--G  293 (626)
                        .......++.+.|| ++|++......+++++..  ++.+-    .. ....+  ...-.+++|.+|+||+....+  +
T Consensus       161 --~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~--G~PDG~~vDadG~lw~~a~~~g~~  236 (307)
T COG3386         161 --DLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEP--GLPDGMAVDADGNLWVAAVWGGGR  236 (307)
T ss_pred             --cEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCC--CCCCceEEeCCCCEEEecccCCce
Confidence              01112345666677 899987655677777542  23221    11 11111  112347889999999655443  8


Q ss_pred             EEEEcCCCCEEEEee
Q 006913          294 LYSFSPSGVLNKFSK  308 (626)
Q Consensus       294 Ly~~d~~g~~~~~~~  308 (626)
                      |.+|+++|+......
T Consensus       237 v~~~~pdG~l~~~i~  251 (307)
T COG3386         237 VVRFNPDGKLLGEIK  251 (307)
T ss_pred             EEEECCCCcEEEEEE
Confidence            999999988776554

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.92  E-value=0.024  Score=69.74  Aligned_cols=252  Identities=13%  Similarity=0.184  Sum_probs=138.2

Q ss_pred             eeEEee-CCEEEEEe--CCcEEEEcCCCCEEEEEeC-CCC-----------CCcccCeEEecCCe-EEEEE--CCeEEEE
Q 006913           41 KPLIGE-DGKIYACS--EKTLFAFESNGTIAWSLDL-DFT-----------CNIGTAPVHGGTGE-VYIVA--ENRVLKV  102 (626)
Q Consensus        41 spvid~-dG~IwIgS--dggL~a~d~~G~~~W~~~~-~~~-----------~~i~~sp~iD~dG~-IwVgT--~ggL~~i  102 (626)
                      ..++|. +|+|||+.  .+.+..+|.+|...-.... +..           ...-..+.+|.+++ |||+.  ++.|..+
T Consensus       572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~i  651 (1057)
T PLN02919        572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREI  651 (1057)
T ss_pred             eEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEE
Confidence            346764 58899985  4578999988876432221 100           01123566776655 88875  4678889


Q ss_pred             ECCCCccccceeEEEecCCC----CCCC-------CCCeeEEEEEEc-CCeEEEEEc-CCeEEEEeCC-CcEEEEECCcc
Q 006913          103 DLLKIGTSESATQVFYGTGS----GKGG-------TGAIAGIAVSTS-SSSVYINVK-GRALFAFMTH-GQLLWSAGPVL  168 (626)
Q Consensus       103 d~~~~~~~~~~~~~~~~~~~----~~~~-------~~~~I~s~~~d~-dG~LwIgT~-~gGL~a~d~~-G~~~w~~~~~~  168 (626)
                      |..++.     +....+...    ....       ...... +..+. ++.|||+.. ++.|..+|.. |...-..+.. 
T Consensus       652 d~~~~~-----V~tlag~G~~g~~~~gg~~~~~~~ln~P~g-Va~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G-  724 (1057)
T PLN02919        652 DFVNET-----VRTLAGNGTKGSDYQGGKKGTSQVLNSPWD-VCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDG-  724 (1057)
T ss_pred             ecCCCE-----EEEEeccCcccCCCCCChhhhHhhcCCCeE-EEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCC-
Confidence            987652     111111100    0000       011122 23344 789999854 4678888875 5432211100 


Q ss_pred             cccccccccccCCCCCccccceEEEcCCCeEEEEcC-CCeEEEEeCCCCeEEEEEcC-----------C---C------C
Q 006913          169 DQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT-QGELYSLSAHSPYFNWIQDL-----------S---S------F  227 (626)
Q Consensus       169 ~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~-~GgL~~ld~~tg~~~w~~~~-----------~---s------~  227 (626)
                      .. ....+.............+++++.++.|||+.. ++.|.++|.+++...+....           +   +      .
T Consensus       725 ~~-~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l  803 (1057)
T PLN02919        725 YE-RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLL  803 (1057)
T ss_pred             cc-ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhc
Confidence            00 000000000000000123556652345999866 57899999987765443210           0   0      1


Q ss_pred             CcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCC-----------CCceeeEEEeeCCeEEEEEc-CCeEE
Q 006913          228 DKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPL-----------GSAEYAPVVDSNGWISVGSL-DGLLY  295 (626)
Q Consensus       228 ~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l-----------~~~~sspvvD~dG~IWVGT~-~gGLy  295 (626)
                      .....++.+.+|+|||+...++.+..+|+.++.+......+..           -.....++++++|++||+.. ++.|.
T Consensus       804 ~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Ir  883 (1057)
T PLN02919        804 QHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIR  883 (1057)
T ss_pred             cCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEE
Confidence            1234677889999999987778999999888776543221100           01234567888999999864 56777


Q ss_pred             EEcCC
Q 006913          296 SFSPS  300 (626)
Q Consensus       296 ~~d~~  300 (626)
                      .+|..
T Consensus       884 vid~~  888 (1057)
T PLN02919        884 YLDLN  888 (1057)
T ss_pred             EEECC
Confidence            88875

>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.89  E-value=0.00064  Score=75.82  Aligned_cols=178  Identities=15%  Similarity=0.238  Sum_probs=102.1

Q ss_pred             EEEEcCCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccc-cccCCCCCccccceEE--EcCCCeEEEEcCCCeEE
Q 006913          134 AVSTSSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQG-CTKTDVDCYFTSVPVI--DQCEGSIYISNTQGELY  209 (626)
Q Consensus       134 ~~~d~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~-~~~~l~~~~i~sspvi--D~~dG~LwIGT~~GgL~  209 (626)
                      .++..++.||++|..+-++++|.. |+.+|++++.+....-... |+...+   .......  ..|..+|++.+.+..|.
T Consensus       209 tPLkvgdtlYvcTphn~v~ALDa~TGkekWkydp~~~~nv~~~~~tCrgVs---y~~a~a~~k~pc~~rIflpt~DarlI  285 (773)
T COG4993         209 TPLKVGDTLYVCTPHNRVFALDAATGKEKWKYDPNLKSNVDPQHQTCRGVS---YGAAKADAKSPCPRRIFLPTADARLI  285 (773)
T ss_pred             cceEECCEEEEecCcceeEEeeccCCceeeecCCCCCCCccccccccccee---cccccccccCCCceeEEeecCCceEE
Confidence            345578999999998999999974 9999998553321110110 111111   0011111  22567799999999999


Q ss_pred             EEeCCCCeEEEEEcCCC-CCcceee--------------eeecCCeEEEEEc--------CCCEEEEEECCCCcEEEEEe
Q 006913          210 SLSAHSPYFNWIQDLSS-FDKAFTL--------------TPGNNGYLYVTIP--------VRALVLALDTSSGNILWHKS  266 (626)
Q Consensus       210 ~ld~~tg~~~w~~~~~s-~~~v~sI--------------~~D~dG~LwVGT~--------~gG~l~alD~~tG~~~w~~~  266 (626)
                      ++|.++|++.|.....+ .+-...+              .....+.|.-+..        ..+.+-.+|..+|+..|...
T Consensus       286 ALdA~tGkvc~~Fa~~Ga~~l~tgm~~~k~g~y~~tS~p~~~~~~~v~~g~v~Dn~st~e~sgVir~fdv~tG~l~w~~D  365 (773)
T COG4993         286 ALDADTGKVCWSFANKGALNLETGMKDTKDGLYYGTSPPEFGVKGIVIAGSVADNESTWEPSGVIRGFDVLTGKLTWAGD  365 (773)
T ss_pred             EEeCCCCcEeheeccCceeeeeccCCCCCCCeEeecCCCcccceeEEEeeccCCCceeeccCccccccccccCceEEccC
Confidence            99999999999743221 0000000              0011111221110        12345567777888888643


Q ss_pred             cCC------C--C--------CceeeEEEeeC-CeEEEEEc------------------CCeEEEEcCC-CCEEEEeecc
Q 006913          267 VGP------L--G--------SAEYAPVVDSN-GWISVGSL------------------DGLLYSFSPS-GVLNKFSKSD  310 (626)
Q Consensus       267 ~~~------l--~--------~~~sspvvD~d-G~IWVGT~------------------~gGLy~~d~~-g~~~~~~~~~  310 (626)
                      .+.      .  +        +...+...|.+ |.||++..                  ..++.++|.+ |+.+|.++..
T Consensus       366 ~gnpD~t~p~~~g~tyt~nspn~W~~~SyD~~lnlVy~p~Gn~~pd~wg~trtp~dekysssivAlD~~TG~~kW~yQtv  445 (773)
T COG4993         366 PGNPDPTAPTAPGQTYTRNSPNSWASASYDAKLNLVYVPMGNQTPDTWGGTRTPGDEKYSSSIVALDATTGKLKWVYQTV  445 (773)
T ss_pred             CCCCCCCCCCCCCceeecCCCCcccccccCCCCCeEEEeCCCCChhhccCCCCcccccccceeEEecCCCcceeeeeecc
Confidence            221      0  0        12334455533 77888752                  3578999985 9999988765


Q ss_pred             CCCC
Q 006913          311 TSDS  314 (626)
Q Consensus       311 ~~~~  314 (626)
                      +.+-
T Consensus       446 hhDl  449 (773)
T COG4993         446 HHDL  449 (773)
T ss_pred             Ccch
Confidence            5543

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.85  E-value=0.0085  Score=63.51  Aligned_cols=229  Identities=11%  Similarity=0.114  Sum_probs=121.3

Q ss_pred             ccCCceeeeeEEeeCC-EEEEEe--CCcEEEEcC-CCCEE-EEEeCCCCCCcccCeEEecCCeEEEEECCeEEEEECCCC
Q 006913           33 RRSAFRLSKPLIGEDG-KIYACS--EKTLFAFES-NGTIA-WSLDLDFTCNIGTAPVHGGTGEVYIVAENRVLKVDLLKI  107 (626)
Q Consensus        33 ~~~~~~~Sspvid~dG-~IwIgS--dggL~a~d~-~G~~~-W~~~~~~~~~i~~sp~iD~dG~IwVgT~ggL~~id~~~~  107 (626)
                      ......--+|+-+.+. .||.+.  .+.++++++ +|... |..  +.  ...+...+|..|.|+ +.+.|++.++++.+
T Consensus        21 ~~~~~~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~--p~--~~~~~~~~d~~g~Lv-~~~~g~~~~~~~~~   95 (307)
T COG3386          21 DKGATLGEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPS--PG--GFSSGALIDAGGRLI-ACEHGVRLLDPDTG   95 (307)
T ss_pred             ecccccccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEEC--CC--CcccceeecCCCeEE-EEccccEEEeccCC
Confidence            3445566677776544 465554  567999998 67543 332  22  233344556666555 45677777776544


Q ss_pred             ccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcC------------CeEEEEeCCCcEEEEECCccccccccc
Q 006913          108 GTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKG------------RALFAFMTHGQLLWSAGPVLDQLGYRQ  175 (626)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~------------gGL~a~d~~G~~~w~~~~~~~~~~~~~  175 (626)
                      ..    ..........  ......+-...+.+|.+|+++..            +.||++++.|...-....   .+    
T Consensus        96 ~~----~t~~~~~~~~--~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~---~~----  162 (307)
T COG3386          96 GK----ITLLAEPEDG--LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDD---DL----  162 (307)
T ss_pred             ce----eEEeccccCC--CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecC---cE----
Confidence            21    0111111111  11112233456789999999875            238888876544322100   00    


Q ss_pred             ccccCCCCCccccceEEEcCCCeEEEEcC-CCeEEEEeCCC--CeE----EEEEcCCCCCcceeeeeecCCeEEEEE-cC
Q 006913          176 GCTKTDVDCYFTSVPVIDQCEGSIYISNT-QGELYSLSAHS--PYF----NWIQDLSSFDKAFTLTPGNNGYLYVTI-PV  247 (626)
Q Consensus       176 ~~~~~l~~~~i~sspviD~~dG~LwIGT~-~GgL~~ld~~t--g~~----~w~~~~~s~~~v~sI~~D~dG~LwVGT-~~  247 (626)
                               .+...++....+..+|+... .+.|++++.+.  +..    .+..........=.+++|.+|+||++. .+
T Consensus       163 ---------~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~  233 (307)
T COG3386         163 ---------TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG  233 (307)
T ss_pred             ---------EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC
Confidence                     01223455542447888755 46788776642  111    111110011112246889999999544 33


Q ss_pred             CCEEEEEECCCCcEEEEEecCCCCCceeeEEEee--CCeEEEEEcC
Q 006913          248 RALVLALDTSSGNILWHKSVGPLGSAEYAPVVDS--NGWISVGSLD  291 (626)
Q Consensus       248 gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~--dG~IWVGT~~  291 (626)
                      ++.+.++++. |+.+-....+.  ...++++...  -+.|||.+..
T Consensus       234 g~~v~~~~pd-G~l~~~i~lP~--~~~t~~~FgG~~~~~L~iTs~~  276 (307)
T COG3386         234 GGRVVRFNPD-GKLLGEIKLPV--KRPTNPAFGGPDLNTLYITSAR  276 (307)
T ss_pred             CceEEEECCC-CcEEEEEECCC--CCCccceEeCCCcCEEEEEecC
Confidence            3489999976 88776665551  1234455432  3678887643

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=97.82  E-value=0.039  Score=54.12  Aligned_cols=254  Identities=10%  Similarity=0.056  Sum_probs=134.3

Q ss_pred             eeeeEEeeCC-EEEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCC-eEEEEE-CCeEEEEECCCCccccce
Q 006913           39 LSKPLIGEDG-KIYACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTG-EVYIVA-ENRVLKVDLLKIGTSESA  113 (626)
Q Consensus        39 ~Sspvid~dG-~IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG-~IwVgT-~ggL~~id~~~~~~~~~~  113 (626)
                      .+.+....++ .|.+++ ++.+..++. ++..........  .....+....++ .+++++ ++.+..++..++..    
T Consensus        12 i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~----   85 (289)
T cd00200          12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHT--GPVRDVAASADGTYLASGSSDKTIRLWDLETGEC----   85 (289)
T ss_pred             EEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCC--cceeEEEECCCCCEEEEEcCCCeEEEEEcCcccc----
Confidence            3444444554 445555 667778876 554433332211  112233444555 566666 78888888876421    


Q ss_pred             eEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEc-CCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceE
Q 006913          114 TQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVK-GRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPV  191 (626)
Q Consensus       114 ~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~-~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspv  191 (626)
                       ...+..     . ...+..+....++.+.++.. ++.+..++.. ++.......            .   ... ...+.
T Consensus        86 -~~~~~~-----~-~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------------~---~~~-i~~~~  142 (289)
T cd00200          86 -VRTLTG-----H-TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG------------H---TDW-VNSVA  142 (289)
T ss_pred             -eEEEec-----c-CCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEecc------------C---CCc-EEEEE
Confidence             111111     1 11333344444456665554 7788889975 655443310            0   011 13344


Q ss_pred             EEcCCCeEE-EEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCC-eEEEEEcCCCEEEEEECCCCcEEEEEecCC
Q 006913          192 IDQCEGSIY-ISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNG-YLYVTIPVRALVLALDTSSGNILWHKSVGP  269 (626)
Q Consensus       192 iD~~dG~Lw-IGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG-~LwVGT~~gG~l~alD~~tG~~~w~~~~~~  269 (626)
                      ..+ ++.+. .++.++.|..+|.++++........ ...+.++....++ .+++++. .+.+..+|..++......... 
T Consensus       143 ~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~~~~~~~~~~-  218 (289)
T cd00200         143 FSP-DGTFVASSSQDGTIKLWDLRTGKCVATLTGH-TGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTGKCLGTLRGH-  218 (289)
T ss_pred             EcC-cCCEEEEEcCCCcEEEEEccccccceeEecC-ccccceEEECCCcCEEEEecC-CCcEEEEECCCCceecchhhc-
Confidence            443 34444 4444888999998876554332211 1234555666666 6777764 578888887777665433111 


Q ss_pred             CCCceeeEEEeeCCeEEEEEc-CCeEEEEcCC-CCEEEEeeccCCCCccccCceEEEEEEecCCcEE
Q 006913          270 LGSAEYAPVVDSNGWISVGSL-DGLLYSFSPS-GVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKA  334 (626)
Q Consensus       270 l~~~~sspvvD~dG~IWVGT~-~gGLy~~d~~-g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~Iw  334 (626)
                       ...+..+..++++.+.++.. ++.|+.++.. ++......        .....+..+....+|...
T Consensus       219 -~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~l  276 (289)
T cd00200         219 -ENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS--------GHTNSVTSLAWSPDGKRL  276 (289)
T ss_pred             -CCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc--------ccCCcEEEEEECCCCCEE
Confidence             11344566666677777665 8889999865 44333222        012234555556665554

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=97.68  E-value=0.066  Score=52.51  Aligned_cols=223  Identities=10%  Similarity=0.067  Sum_probs=119.3

Q ss_pred             EEeeCC-EEEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE--CCeEEEEECCCCccccceeEEE
Q 006913           43 LIGEDG-KIYACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA--ENRVLKVDLLKIGTSESATQVF  117 (626)
Q Consensus        43 vid~dG-~IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~  117 (626)
                      ....++ .|++++ ++.+..++. +++....+....  ..+.++....++.+.+++  ++.+..++..+..     ....
T Consensus        58 ~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~  130 (289)
T cd00200          58 AASADGTYLASGSSDKTIRLWDLETGECVRTLTGHT--SYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-----CLTT  130 (289)
T ss_pred             EECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccC--CcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-----EEEE
Confidence            333444 566666 667888887 444443332211  123344455556666554  6888888887542     1111


Q ss_pred             ecCCCCCCCCCCeeEEEEEEcCCeEEEEEc-CCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcC
Q 006913          118 YGTGSGKGGTGAIAGIAVSTSSSSVYINVK-GRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQC  195 (626)
Q Consensus       118 ~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~-~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~  195 (626)
                      +.     .. ...+..+....++.+.++.. ++.+..+|.. ++....+..            .   ... ...+...+.
T Consensus       131 ~~-----~~-~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~------------~---~~~-i~~~~~~~~  188 (289)
T cd00200         131 LR-----GH-TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTG------------H---TGE-VNSVAFSPD  188 (289)
T ss_pred             ec-----cC-CCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEec------------C---ccc-cceEEECCC
Confidence            11     01 12334444444455555444 7778888875 554433200            0   001 123444431


Q ss_pred             CCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCcee
Q 006913          196 EGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEY  275 (626)
Q Consensus       196 dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~s  275 (626)
                      +..+++++.++.+..+|.++++...... .....+.++....++.++++....+.+..+|..++.........  ...+.
T Consensus       189 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~--~~~i~  265 (289)
T cd00200         189 GEKLLSSSSDGTIKLWDLSTGKCLGTLR-GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH--TNSVT  265 (289)
T ss_pred             cCEEEEecCCCcEEEEECCCCceecchh-hcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc--CCcEE
Confidence            3378888888889999998765543321 11123455666666777776643578888887777665443321  12244


Q ss_pred             eEEEeeC-CeEEEEEcCCeEEEE
Q 006913          276 APVVDSN-GWISVGSLDGLLYSF  297 (626)
Q Consensus       276 spvvD~d-G~IWVGT~~gGLy~~  297 (626)
                      .+..+++ ..+++++.++.+..+
T Consensus       266 ~~~~~~~~~~l~~~~~d~~i~iw  288 (289)
T cd00200         266 SLAWSPDGKRLASGSADGTIRIW  288 (289)
T ss_pred             EEEECCCCCEEEEecCCCeEEec
Confidence            4556655 355556665555444

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.60  E-value=0.094  Score=64.61  Aligned_cols=245  Identities=16%  Similarity=0.142  Sum_probs=127.2

Q ss_pred             eEEec-CCeEEEEE--CCeEEEEECCCCccccceeEEEecC-CCC--CCC------CCCeeEEEEEE-cCCeEEEEEcC-
Q 006913           83 PVHGG-TGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGT-GSG--KGG------TGAIAGIAVST-SSSSVYINVKG-  148 (626)
Q Consensus        83 p~iD~-dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~-~~~--~~~------~~~~I~s~~~d-~dG~LwIgT~~-  148 (626)
                      +.+|. +|+|||+.  ++.|.++|..+..      ....+. ...  ...      .....+ +..+ .++.||++... 
T Consensus       573 vavd~~~g~lyVaDs~n~rI~v~d~~G~~------i~~ig~~g~~G~~dG~~~~a~f~~P~G-Iavd~~gn~LYVaDt~n  645 (1057)
T PLN02919        573 LAIDLLNNRLFISDSNHNRIVVTDLDGNF------IVQIGSTGEEGLRDGSFEDATFNRPQG-LAYNAKKNLLYVADTEN  645 (1057)
T ss_pred             EEEECCCCeEEEEECCCCeEEEEeCCCCE------EEEEccCCCcCCCCCchhccccCCCcE-EEEeCCCCEEEEEeCCC
Confidence            55675 57899986  6789999987642      222221 110  000      011222 3344 34568998643 


Q ss_pred             CeEEEEeCCCcEEEEE-CCcccccccccccccCCCCCccccceEEEcCCCeEEEEcC-CCeEEEEeCCCCeEEEEEcCC-
Q 006913          149 RALFAFMTHGQLLWSA-GPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT-QGELYSLSAHSPYFNWIQDLS-  225 (626)
Q Consensus       149 gGL~a~d~~G~~~w~~-~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~-~GgL~~ld~~tg~~~w~~~~~-  225 (626)
                      +.|..+|..+..+-.+ +.......+..+........+-...+++++.++.|||+.. ++.|+.+|..++........+ 
T Consensus       646 ~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~  725 (1057)
T PLN02919        646 HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGY  725 (1057)
T ss_pred             ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCc
Confidence            5577788753332222 1100000000000000000000122456643688999865 567899998887654321110 


Q ss_pred             ------------CCCcceeeeeecCCe-EEEEEcCCCEEEEEECCCCcEEEEEecCC--------CC-----------Cc
Q 006913          226 ------------SFDKAFTLTPGNNGY-LYVTIPVRALVLALDTSSGNILWHKSVGP--------LG-----------SA  273 (626)
Q Consensus       226 ------------s~~~v~sI~~D~dG~-LwVGT~~gG~l~alD~~tG~~~w~~~~~~--------l~-----------~~  273 (626)
                                  .......++.+.+|. |||+...++.+..+|..++...+.....+        ++           ..
T Consensus       726 ~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~  805 (1057)
T PLN02919        726 ERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH  805 (1057)
T ss_pred             cccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccC
Confidence                        011234577777774 99998777789999988776543221000        00           01


Q ss_pred             eeeEEEeeCCeEEEEEc-CCeEEEEcCCC-CEEEEeeccC---CCCc----cccCceEEEEEEecCCcEEEE
Q 006913          274 EYAPVVDSNGWISVGSL-DGLLYSFSPSG-VLNKFSKSDT---SDSV----IQSSPYWFHLLGPSIGLKAIL  336 (626)
Q Consensus       274 ~sspvvD~dG~IWVGT~-~gGLy~~d~~g-~~~~~~~~~~---~~~~----ilssp~V~~Il~DsdG~IwI~  336 (626)
                      ...++++++|+|||+.. ++.|..+|+++ ..........   .++.    .+..  ...|..+.+|++||.
T Consensus       806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~--P~GIavd~dG~lyVa  875 (1057)
T PLN02919        806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSE--PAGLALGENGRLFVA  875 (1057)
T ss_pred             CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCC--ceEEEEeCCCCEEEE
Confidence            23567788999999864 56888999864 3333322100   0000    0112  235777888998864

>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.49  E-value=0.01  Score=66.64  Aligned_cols=215  Identities=17%  Similarity=0.321  Sum_probs=114.5

Q ss_pred             eeeeeEEeeCCEEEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCcc------------cCeEEec---CCeEEEEE-CCeE
Q 006913           38 RLSKPLIGEDGKIYACS-EKTLFAFES-NGTIAWSLDLDFTCNIG------------TAPVHGG---TGEVYIVA-ENRV   99 (626)
Q Consensus        38 ~~Sspvid~dG~IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i~------------~sp~iD~---dG~IwVgT-~ggL   99 (626)
                      -..+|+. .++.||+|+ .+.++++|. +|+.+|++......++.            .....++   ..+||+.| +..|
T Consensus       206 ~e~tPLk-vgdtlYvcTphn~v~ALDa~TGkekWkydp~~~~nv~~~~~tCrgVsy~~a~a~~k~pc~~rIflpt~Darl  284 (773)
T COG4993         206 NEVTPLK-VGDTLYVCTPHNRVFALDAATGKEKWKYDPNLKSNVDPQHQTCRGVSYGAAKADAKSPCPRRIFLPTADARL  284 (773)
T ss_pred             ccccceE-ECCEEEEecCcceeEEeeccCCceeeecCCCCCCCcccccccccceecccccccccCCCceeEEeecCCceE
Confidence            3567877 788999999 678999998 99999998653211110            0111011   23599998 8999


Q ss_pred             EEEECCCCccccceeEEEecCCC--------CCCCCCCeeEEE-EE------------EcCCeEEEEEcCCeE-EEEeC-
Q 006913          100 LKVDLLKIGTSESATQVFYGTGS--------GKGGTGAIAGIA-VS------------TSSSSVYINVKGRAL-FAFMT-  156 (626)
Q Consensus       100 ~~id~~~~~~~~~~~~~~~~~~~--------~~~~~~~~I~s~-~~------------d~dG~LwIgT~~gGL-~a~d~-  156 (626)
                      .++|.++++.-     |.+....        .....+...+.. ..            +.+-.+|..   .|+ -.+|. 
T Consensus       285 IALdA~tGkvc-----~~Fa~~Ga~~l~tgm~~~k~g~y~~tS~p~~~~~~~v~~g~v~Dn~st~e~---sgVir~fdv~  356 (773)
T COG4993         285 IALDADTGKVC-----WSFANKGALNLETGMKDTKDGLYYGTSPPEFGVKGIVIAGSVADNESTWEP---SGVIRGFDVL  356 (773)
T ss_pred             EEEeCCCCcEe-----heeccCceeeeeccCCCCCCCeEeecCCCcccceeEEEeeccCCCceeecc---Cccccccccc
Confidence            99999998642     2222110        000001011100 00            111123322   233 35665 


Q ss_pred             CCcEEEEECCccccccccc--ccccCCCCCccccceEEEcCCCeEEEEcCC------------------CeEEEEeCCCC
Q 006913          157 HGQLLWSAGPVLDQLGYRQ--GCTKTDVDCYFTSVPVIDQCEGSIYISNTQ------------------GELYSLSAHSP  216 (626)
Q Consensus       157 ~G~~~w~~~~~~~~~~~~~--~~~~~l~~~~i~sspviD~~dG~LwIGT~~------------------GgL~~ld~~tg  216 (626)
                      +|+..|...+.-.+.....  +..-..+.-+..++..+|...|.||++..+                  .++.++|.++|
T Consensus       357 tG~l~w~~D~gnpD~t~p~~~g~tyt~nspn~W~~~SyD~~lnlVy~p~Gn~~pd~wg~trtp~dekysssivAlD~~TG  436 (773)
T COG4993         357 TGKLTWAGDPGNPDPTAPTAPGQTYTRNSPNSWASASYDAKLNLVYVPMGNQTPDTWGGTRTPGDEKYSSSIVALDATTG  436 (773)
T ss_pred             cCceEEccCCCCCCCCCCCCCCceeecCCCCcccccccCCCCCeEEEeCCCCChhhccCCCCcccccccceeEEecCCCc
Confidence            4888886422111100000  000000111223445567556888987643                  37999999999


Q ss_pred             eEEEEEcCCC-----CC--c---ceeeeeecCCeE---EEEEcCCCEEEEEECCCCcEEE
Q 006913          217 YFNWIQDLSS-----FD--K---AFTLTPGNNGYL---YVTIPVRALVLALDTSSGNILW  263 (626)
Q Consensus       217 ~~~w~~~~~s-----~~--~---v~sI~~D~dG~L---wVGT~~gG~l~alD~~tG~~~w  263 (626)
                      +.+|.+....     ++  .   ...+.  .||.+   .++-...|.+|.+|+.+|+.+-
T Consensus       437 ~~kW~yQtvhhDlWDmDvp~qp~L~D~~--~DG~~vpalv~ptk~G~~YVlDRrtGe~lv  494 (773)
T COG4993         437 KLKWVYQTVHHDLWDMDVPAQPTLLDIT--KDGKVVPALVHPTKNGFIYVLDRRTGELLV  494 (773)
T ss_pred             ceeeeeeccCcchhcccCCCCceEEEee--cCCcEeeeeecccccCcEEEEEcCCCcccc
Confidence            9999865321     11  1   11222  25642   2332356788999999998753

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.92  E-value=0.42  Score=50.65  Aligned_cols=178  Identities=13%  Similarity=0.122  Sum_probs=81.8

Q ss_pred             cCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCe
Q 006913          138 SSSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPY  217 (626)
Q Consensus       138 ~dG~LwIgT~~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~  217 (626)
                      .+...|+... .|+.....+|-..|..-+    ++      ..+.+..+ .-...+  ++.+++.+..|.||+= .++|+
T Consensus        70 ~~~~g~ivG~-~g~ll~T~DgG~tW~~v~----l~------~~lpgs~~-~i~~l~--~~~~~l~~~~G~iy~T-~DgG~  134 (302)
T PF14870_consen   70 DGNEGWIVGE-PGLLLHTTDGGKTWERVP----LS------SKLPGSPF-GITALG--DGSAELAGDRGAIYRT-TDGGK  134 (302)
T ss_dssp             ETTEEEEEEE-TTEEEEESSTTSS-EE--------------TT-SS-EE-EEEEEE--TTEEEEEETT--EEEE-SSTTS
T ss_pred             cCCceEEEcC-CceEEEecCCCCCcEEee----cC------CCCCCCee-EEEEcC--CCcEEEEcCCCcEEEe-CCCCC
Confidence            4567888765 456666666555586311    00      01111111 112334  6778877777777764 45543


Q ss_pred             EEEEEcCC-CCCcceeeeeecCCeEEEEEcCCCEEE-EEECCCCcEEEEEecCCCCCceeeEEEeeCCeEEEEEcCCeEE
Q 006913          218 FNWIQDLS-SFDKAFTLTPGNNGYLYVTIPVRALVL-ALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLY  295 (626)
Q Consensus       218 ~~w~~~~~-s~~~v~sI~~D~dG~LwVGT~~gG~l~-alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy  295 (626)
                       .|..-.. ....+..+....||++.+.+.. |.++ ..|  .|...|+.....-...+.++...+++.+|+.+.++.|+
T Consensus       135 -tW~~~~~~~~gs~~~~~r~~dG~~vavs~~-G~~~~s~~--~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~  210 (302)
T PF14870_consen  135 -TWQAVVSETSGSINDITRSSDGRYVAVSSR-GNFYSSWD--PGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQ  210 (302)
T ss_dssp             -SEEEEE-S----EEEEEE-TTS-EEEEETT-SSEEEEE---TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEE
T ss_pred             -CeeEcccCCcceeEeEEECCCCcEEEEECc-ccEEEEec--CCCccceEEccCccceehhceecCCCCEEEEeCCcEEE
Confidence             5764322 2234555666778886666644 4444 444  46555653222112346678888899999999666655


Q ss_pred             EEc-CCCCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEE
Q 006913          296 SFS-PSGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILC  337 (626)
Q Consensus       296 ~~d-~~g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T  337 (626)
                      .-+ ++....|.....+..   ...-.+..+....++.+|+..
T Consensus       211 ~s~~~~~~~~w~~~~~~~~---~~~~~~ld~a~~~~~~~wa~g  250 (302)
T PF14870_consen  211 FSDDPDDGETWSEPIIPIK---TNGYGILDLAYRPPNEIWAVG  250 (302)
T ss_dssp             EEE-TTEEEEE---B-TTS---S--S-EEEEEESSSS-EEEEE
T ss_pred             EccCCCCccccccccCCcc---cCceeeEEEEecCCCCEEEEe
Confidence            555 233334433211110   112224456667789998644

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=96.66  E-value=0.91  Score=46.01  Aligned_cols=221  Identities=10%  Similarity=0.071  Sum_probs=113.4

Q ss_pred             EEEEEe--CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCe-EEEEE--CCeEEEEECCCCccccceeEEEecCCC
Q 006913           49 KIYACS--EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGE-VYIVA--ENRVLKVDLLKIGTSESATQVFYGTGS  122 (626)
Q Consensus        49 ~IwIgS--dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~-IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~  122 (626)
                      .+|+..  ++.++.+|. +++....+....   ....+..+.+|. +|+..  ++.|..+|..++..     ...+..  
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~---~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-----~~~~~~--   71 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ---RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV-----IGTLPS--   71 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCC---CCCceEECCCCCEEEEEECCCCeEEEEECCCCcE-----EEeccC--
Confidence            466644  567888997 677654443321   123456666776 56654  57788889876531     111111  


Q ss_pred             CCCCCCCeeEEEEEEcCC-eEEEEEc-CCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeE
Q 006913          123 GKGGTGAIAGIAVSTSSS-SVYINVK-GRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSI  199 (626)
Q Consensus       123 ~~~~~~~~I~s~~~d~dG-~LwIgT~-~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~L  199 (626)
                         . ... .......++ .+|++.. ++.|..+|.. ++.+.....     +      .     . ...+...+ +|.+
T Consensus        72 ---~-~~~-~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-----~------~-----~-~~~~~~~~-dg~~  128 (300)
T TIGR03866        72 ---G-PDP-ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-----G------V-----E-PEGMAVSP-DGKI  128 (300)
T ss_pred             ---C-CCc-cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-----C------C-----C-cceEEECC-CCCE
Confidence               0 111 122233444 5777643 4668888875 544333200     0      0     0 12234444 4544


Q ss_pred             -EEEcCCC-eEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCe-EEEEEcCCCEEEEEECCCCcEEEEEecC--CC--CC
Q 006913          200 -YISNTQG-ELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGY-LYVTIPVRALVLALDTSSGNILWHKSVG--PL--GS  272 (626)
Q Consensus       200 -wIGT~~G-gL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~-LwVGT~~gG~l~alD~~tG~~~w~~~~~--~l--~~  272 (626)
                       +++..++ .++.+|.++++.........  ....+..+.+|. ||++...++.+..+|..+++........  ..  ..
T Consensus       129 l~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~  206 (300)
T TIGR03866       129 VVNTSETTNMAHFIDTKTYEIVDNVLVDQ--RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEA  206 (300)
T ss_pred             EEEEecCCCeEEEEeCCCCeEEEEEEcCC--CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccccccccc
Confidence             4444433 35667887766543322111  123344555664 6666544578888998888654332211  00  01


Q ss_pred             -ceeeEEEeeCCe-EEEEE-cCCeEEEEcCC-CCEE
Q 006913          273 -AEYAPVVDSNGW-ISVGS-LDGLLYSFSPS-GVLN  304 (626)
Q Consensus       273 -~~sspvvD~dG~-IWVGT-~~gGLy~~d~~-g~~~  304 (626)
                       ....+..+++|. +|++. .++.+..+|.. ++..
T Consensus       207 ~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~  242 (300)
T TIGR03866       207 VQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL  242 (300)
T ss_pred             CCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence             112345566665 56654 34578888864 4443

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.61  E-value=1.1  Score=48.54  Aligned_cols=61  Identities=15%  Similarity=0.256  Sum_probs=37.5

Q ss_pred             eeEEeeCCEEEEEeC--------------CcEEEEcC---CCCE-EEEEeCCCCCCcccCeEEecCCeEEEEECCeEEEE
Q 006913           41 KPLIGEDGKIYACSE--------------KTLFAFES---NGTI-AWSLDLDFTCNIGTAPVHGGTGEVYIVAENRVLKV  102 (626)
Q Consensus        41 spvid~dG~IwIgSd--------------ggL~a~d~---~G~~-~W~~~~~~~~~i~~sp~iD~dG~IwVgT~ggL~~i  102 (626)
                      .+.+|.+|+|||+..              +.+++++.   +|.. .++...... .....+.+..+| |||+....|+++
T Consensus        18 ~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l-~~p~Gi~~~~~G-lyV~~~~~i~~~   95 (367)
T TIGR02604        18 AVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEEL-SMVTGLAVAVGG-VYVATPPDILFL   95 (367)
T ss_pred             eeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCC-CCccceeEecCC-EEEeCCCeEEEE
Confidence            447788999999852              25777764   3443 222222211 223456666777 999887788888


Q ss_pred             E
Q 006913          103 D  103 (626)
Q Consensus       103 d  103 (626)
                      .
T Consensus        96 ~   96 (367)
T TIGR02604        96 R   96 (367)
T ss_pred             e
Confidence            4

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=96.54  E-value=1.5  Score=48.32  Aligned_cols=143  Identities=10%  Similarity=0.116  Sum_probs=77.7

Q ss_pred             EEcCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCC
Q 006913          136 STSSSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHS  215 (626)
Q Consensus       136 ~d~dG~LwIgT~~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~t  215 (626)
                      ...+|.+++....+.++.-...|...|....    .+    .     ...+ .++.... ++.+|+.+..|+++.-+ +.
T Consensus       246 ~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~----~~----~-----~~~l-~~v~~~~-dg~l~l~g~~G~l~~S~-d~  309 (398)
T PLN00033        246 RSPDGDYVAVSSRGNFYLTWEPGQPYWQPHN----RA----S-----ARRI-QNMGWRA-DGGLWLLTRGGGLYVSK-GT  309 (398)
T ss_pred             EcCCCCEEEEECCccEEEecCCCCcceEEec----CC----C-----ccce-eeeeEcC-CCCEEEEeCCceEEEec-CC
Confidence            3456777766655555555555766676311    00    0     0111 3344453 88999998888877653 34


Q ss_pred             CeE----EEEEcC-C-CCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEec--CCCCCceeeEEEeeCCeEEE
Q 006913          216 PYF----NWIQDL-S-SFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSV--GPLGSAEYAPVVDSNGWISV  287 (626)
Q Consensus       216 g~~----~w~~~~-~-s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~--~~l~~~~sspvvD~dG~IWV  287 (626)
                      |+.    .|.... . ....+..+....++.+|++.. +|.++..  .++-..|+...  +........+....++..|+
T Consensus       310 G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~-~G~v~~s--~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~  386 (398)
T PLN00033        310 GLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGG-SGILLRS--TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFV  386 (398)
T ss_pred             CCcccccceeecccCCCCcceEEEEEcCCCcEEEEEC-CCcEEEe--CCCCcceeEccccCCCCcceeEEEEcCCCceEE
Confidence            331    233211 1 111244555667889999885 4555443  24555676532  21111234566565789999


Q ss_pred             EEcCCeEEEE
Q 006913          288 GSLDGLLYSF  297 (626)
Q Consensus       288 GT~~gGLy~~  297 (626)
                      ...+|-|.++
T Consensus       387 ~G~~G~il~~  396 (398)
T PLN00033        387 LGNDGVLLRY  396 (398)
T ss_pred             EeCCcEEEEe
Confidence            8877666554

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.49  E-value=0.92  Score=48.07  Aligned_cols=223  Identities=13%  Similarity=0.109  Sum_probs=98.0

Q ss_pred             eCCEEEEEeCCcEEEEcCCCCEEEEEe-CCCC-CCcccCeEEecCCeEEEEE-CCeEEEEECCCCccccceeEEEecCCC
Q 006913           46 EDGKIYACSEKTLFAFESNGTIAWSLD-LDFT-CNIGTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSESATQVFYGTGS  122 (626)
Q Consensus        46 ~dG~IwIgSdggL~a~d~~G~~~W~~~-~~~~-~~i~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~  122 (626)
                      .+...||..+.++.....+|-..|... +... ......+..-.++.+++++ .+.||+- .+.+.      .|..-.. 
T Consensus        70 ~~~~g~ivG~~g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T-~DgG~------tW~~~~~-  141 (302)
T PF14870_consen   70 DGNEGWIVGEPGLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRT-TDGGK------TWQAVVS-  141 (302)
T ss_dssp             ETTEEEEEEETTEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEE-SSTTS------SEEEEE--
T ss_pred             cCCceEEEcCCceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEe-CCCCC------CeeEccc-
Confidence            356778866555544444444356542 2111 0011122223456778777 4556654 44442      2321110 


Q ss_pred             CCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEE
Q 006913          123 GKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYIS  202 (626)
Q Consensus       123 ~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIG  202 (626)
                         .....+.......+|++.+.+..+.++.--..|+..|....       +.      .... ..++...+ ++.||+.
T Consensus       142 ---~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~-------r~------~~~r-iq~~gf~~-~~~lw~~  203 (302)
T PF14870_consen  142 ---ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHN-------RN------SSRR-IQSMGFSP-DGNLWML  203 (302)
T ss_dssp             ---S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE---------------SSS--EEEEEE-T-TS-EEEE
T ss_pred             ---CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEc-------cC------ccce-ehhceecC-CCCEEEE
Confidence               01123344445577776656655556544334655575311       10      0011 24455665 8999999


Q ss_pred             cCCCeEEEEeCCCCeEEEEEcCCC----CCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecC--CCCCceee
Q 006913          203 NTQGELYSLSAHSPYFNWIQDLSS----FDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVG--PLGSAEYA  276 (626)
Q Consensus       203 T~~GgL~~ld~~tg~~~w~~~~~s----~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~--~l~~~~ss  276 (626)
                      +..|.|..-+.......|......    ...+..++...++.+|++.. +|.+++-  .+|-..|+....  ....-...
T Consensus       204 ~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~~S--~DgGktW~~~~~~~~~~~n~~~  280 (302)
T PF14870_consen  204 ARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLLVS--TDGGKTWQKDRVGENVPSNLYR  280 (302)
T ss_dssp             ETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EEEE--SSTTSS-EE-GGGTTSSS---E
T ss_pred             eCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEEEe--CCCCccceECccccCCCCceEE
Confidence            877666655523335667754321    12256677778899999984 4555542  234456765322  11111333


Q ss_pred             EEEeeCCeEEEEEcCCeEEEE
Q 006913          277 PVVDSNGWISVGSLDGLLYSF  297 (626)
Q Consensus       277 pvvD~dG~IWVGT~~gGLy~~  297 (626)
                      ++...++.-|+-..+|-|.+|
T Consensus       281 i~f~~~~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  281 IVFVNPDKGFVLGQDGVLLRY  301 (302)
T ss_dssp             EEEEETTEEEEE-STTEEEEE
T ss_pred             EEEcCCCceEEECCCcEEEEe
Confidence            555546677776666655554

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=96.19  E-value=2.7  Score=46.38  Aligned_cols=199  Identities=14%  Similarity=0.130  Sum_probs=100.7

Q ss_pred             ceeeeeEEeeCCEEEEEeC----CcEEEEcCCCCEEEEEeCCCCCCcccCeEEecCCe-EEEEECCeEEEEECCCCcccc
Q 006913           37 FRLSKPLIGEDGKIYACSE----KTLFAFESNGTIAWSLDLDFTCNIGTAPVHGGTGE-VYIVAENRVLKVDLLKIGTSE  111 (626)
Q Consensus        37 ~~~Sspvid~dG~IwIgSd----ggL~a~d~~G~~~W~~~~~~~~~i~~sp~iD~dG~-IwVgT~ggL~~id~~~~~~~~  111 (626)
                      .-.|+|+| ..++||.-++    |.||..|.+|+-+.. +.+.. ... .--...+|. |.....|.+|.+||.+...  
T Consensus       226 ~~vS~PmI-V~~RvYFlsD~eG~GnlYSvdldGkDlrr-HTnFt-dYY-~R~~nsDGkrIvFq~~GdIylydP~td~l--  299 (668)
T COG4946         226 GNVSSPMI-VGERVYFLSDHEGVGNLYSVDLDGKDLRR-HTNFT-DYY-PRNANSDGKRIVFQNAGDIYLYDPETDSL--  299 (668)
T ss_pred             CCcCCceE-EcceEEEEecccCccceEEeccCCchhhh-cCCch-hcc-ccccCCCCcEEEEecCCcEEEeCCCcCcc--
Confidence            45677777 5667777663    467888876653211 11111 000 000113454 4444467788889887532  


Q ss_pred             ceeEEEecCCCC-CCCCCCeeEEE-----EEEcCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccccccccccCCCCCc
Q 006913          112 SATQVFYGTGSG-KGGTGAIAGIA-----VSTSSSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCY  185 (626)
Q Consensus       112 ~~~~~~~~~~~~-~~~~~~~I~s~-----~~d~dG~LwIgT~~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~  185 (626)
                        .+...+.... .......+..+     ....+|.++.-...+..+.+++.+...-+.       +.+.         .
T Consensus       300 --ekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~~iqv-------~~~~---------~  361 (668)
T COG4946         300 --EKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGYSIQV-------GKKG---------G  361 (668)
T ss_pred             --eeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCeeEEc-------CCCC---------c
Confidence              1222221000 00000010000     111344444333345566666643222221       1010         0


Q ss_pred             cc-cceEEEcCCCeEEEEcCCC-eEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEE
Q 006913          186 FT-SVPVIDQCEGSIYISNTQG-ELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILW  263 (626)
Q Consensus       186 i~-sspviD~~dG~LwIGT~~G-gL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w  263 (626)
                      +. .....|  ...+.+|+.+| .|-.+|.+++++.-...  ....+.++.++.+|.-.+..++...++.+|..+|+..-
T Consensus       362 VrY~r~~~~--~e~~vigt~dgD~l~iyd~~~~e~kr~e~--~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~  437 (668)
T COG4946         362 VRYRRIQVD--PEGDVIGTNDGDKLGIYDKDGGEVKRIEK--DLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRL  437 (668)
T ss_pred             eEEEEEccC--CcceEEeccCCceEEEEecCCceEEEeeC--CccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeE
Confidence            11 122334  34788999877 78899999988765433  23457788888898744444456788888888887653

>PRK13684 Ycf48-like protein; Provisional

Probab=96.14  E-value=2.5  Score=45.43  Aligned_cols=255  Identities=13%  Similarity=0.098  Sum_probs=116.4

Q ss_pred             eCCEEEE-EeCCcEEEEcCCCCEEEEEeCCC---CCCcccCeEEecCCeEEEEEC-CeEEEEECCCCccccceeEEEecC
Q 006913           46 EDGKIYA-CSEKTLFAFESNGTIAWSLDLDF---TCNIGTAPVHGGTGEVYIVAE-NRVLKVDLLKIGTSESATQVFYGT  120 (626)
Q Consensus        46 ~dG~IwI-gSdggL~a~d~~G~~~W~~~~~~---~~~i~~sp~iD~dG~IwVgT~-ggL~~id~~~~~~~~~~~~~~~~~  120 (626)
                      ++.+.|+ |..+.++.=. +|-..|......   ......++..+ .+..|++.. +.|++ ..+.+.      .|..-.
T Consensus        55 d~~~g~avG~~G~il~T~-DgG~tW~~~~~~~~~~~~~l~~v~~~-~~~~~~~G~~g~i~~-S~DgG~------tW~~~~  125 (334)
T PRK13684         55 DPNHGWLVGSNRTLLETN-DGGETWEERSLDLPEENFRLISISFK-GDEGWIVGQPSLLLH-TTDGGK------NWTRIP  125 (334)
T ss_pred             CCCcEEEEECCCEEEEEc-CCCCCceECccCCcccccceeeeEEc-CCcEEEeCCCceEEE-ECCCCC------CCeEcc
Confidence            4455665 4455555544 333357643211   00112234443 345677664 44554 444442      232211


Q ss_pred             CCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEE
Q 006913          121 GSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIY  200 (626)
Q Consensus       121 ~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~Lw  200 (626)
                      .. ....+.... +....++.+|+....++|+.-+..|+ .|....   . +      .   ...+ ..+..++ ++.++
T Consensus       126 ~~-~~~~~~~~~-i~~~~~~~~~~~g~~G~i~~S~DgG~-tW~~~~---~-~------~---~g~~-~~i~~~~-~g~~v  187 (334)
T PRK13684        126 LS-EKLPGSPYL-ITALGPGTAEMATNVGAIYRTTDGGK-NWEALV---E-D------A---AGVV-RNLRRSP-DGKYV  187 (334)
T ss_pred             CC-cCCCCCceE-EEEECCCcceeeeccceEEEECCCCC-CceeCc---C-C------C---cceE-EEEEECC-CCeEE
Confidence            10 001111222 22334556777776555654443354 476310   0 0      0   0111 2234443 56555


Q ss_pred             EEcCCCeEEEEeCCCCeEEEEEcCC-CCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCC-C--CCceee
Q 006913          201 ISNTQGELYSLSAHSPYFNWIQDLS-SFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGP-L--GSAEYA  276 (626)
Q Consensus       201 IGT~~GgL~~ld~~tg~~~w~~~~~-s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~-l--~~~~ss  276 (626)
                      +....|.++.. .+.+...|..... ....+.++....+|++|+... +|.+. +...++-..|+....+ .  .....+
T Consensus       188 ~~g~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~-~~s~d~G~sW~~~~~~~~~~~~~l~~  264 (334)
T PRK13684        188 AVSSRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQIR-FNDPDDLESWSKPIIPEITNGYGYLD  264 (334)
T ss_pred             EEeCCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-CCEEE-EccCCCCCccccccCCccccccceee
Confidence            55455655544 2233355764322 223345566666888998874 44443 3212344566632221 1  111334


Q ss_pred             EEEeeCCeEEEEEcCCeEEEEcCCCCEEEEeeccCCCCccccCceEEEEEEecCCcEEE
Q 006913          277 PVVDSNGWISVGSLDGLLYSFSPSGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAI  335 (626)
Q Consensus       277 pvvD~dG~IWVGT~~gGLy~~d~~g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI  335 (626)
                      +...+++.+|+...+|.++.-...| ..|..... ...  .+ ..++.++...++..|+
T Consensus       265 v~~~~~~~~~~~G~~G~v~~S~d~G-~tW~~~~~-~~~--~~-~~~~~~~~~~~~~~~~  318 (334)
T PRK13684        265 LAYRTPGEIWAGGGNGTLLVSKDGG-KTWEKDPV-GEE--VP-SNFYKIVFLDPEKGFV  318 (334)
T ss_pred             EEEcCCCCEEEEcCCCeEEEeCCCC-CCCeECCc-CCC--CC-cceEEEEEeCCCceEE
Confidence            5556678999998877777544334 34433210 011  22 2445555555667764

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=96.13  E-value=0.012  Score=42.69  Aligned_cols=39  Identities=33%  Similarity=0.650  Sum_probs=26.2

Q ss_pred             CcEEEEEecCCCCCceeeEEEeeCCeEEEEEcCCeEEEEcCC
Q 006913          259 GNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPS  300 (626)
Q Consensus       259 G~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~  300 (626)
                      |+.+|++..+.  ....+|+++ +|.||+++.++.||++|+.
T Consensus         1 G~~~W~~~~~~--~~~~~~~v~-~g~vyv~~~dg~l~ald~~   39 (40)
T PF13570_consen    1 GKVLWSYDTGG--PIWSSPAVA-GGRVYVGTGDGNLYALDAA   39 (40)
T ss_dssp             S-EEEEEE-SS-----S--EEC-TSEEEEE-TTSEEEEEETT
T ss_pred             CceeEEEECCC--CcCcCCEEE-CCEEEEEcCCCEEEEEeCC
Confidence            57889887762  345678887 8999999999999999863

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=96.04  E-value=0.45  Score=48.40  Aligned_cols=146  Identities=14%  Similarity=0.114  Sum_probs=85.1

Q ss_pred             CCeeEEEEEEcCCeEEEEEcCCeEEEEeC-CCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCC
Q 006913          128 GAIAGIAVSTSSSSVYINVKGRALFAFMT-HGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQG  206 (626)
Q Consensus       128 ~~~I~s~~~d~dG~LwIgT~~gGL~a~d~-~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~G  206 (626)
                      +.+-....+-.+..|.-.++++.+-..|- +|+.+....     ++           .++ .+.-+-+ +|.|..-.+.+
T Consensus       144 g~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-----~~-----------s~V-tSlEvs~-dG~ilTia~gs  205 (334)
T KOG0278|consen  144 GGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-----FN-----------SPV-TSLEVSQ-DGRILTIAYGS  205 (334)
T ss_pred             CcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-----cC-----------CCC-cceeecc-CCCEEEEecCc
Confidence            33444455667777777778888888885 587765531     11           111 2333443 77777666788


Q ss_pred             eEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEE
Q 006913          207 ELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWIS  286 (626)
Q Consensus       207 gL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IW  286 (626)
                      +|..+|+++-...-.+..+-  .+.+.-...+..+||+......++.+|-.||+.+-.++.+-.+. +.+.-..++|.+|
T Consensus       206 sV~Fwdaksf~~lKs~k~P~--nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gp-VhcVrFSPdGE~y  282 (334)
T KOG0278|consen  206 SVKFWDAKSFGLLKSYKMPC--NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGP-VHCVRFSPDGELY  282 (334)
T ss_pred             eeEEeccccccceeeccCcc--ccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCc-eEEEEECCCCcee
Confidence            89999988754443333221  12222222345788876556788999988998765433322222 3335566788888


Q ss_pred             E-EEcCCeE
Q 006913          287 V-GSLDGLL  294 (626)
Q Consensus       287 V-GT~~gGL  294 (626)
                      . |+.+|.|
T Consensus       283 AsGSEDGTi  291 (334)
T KOG0278|consen  283 ASGSEDGTI  291 (334)
T ss_pred             eccCCCceE
Confidence            7 4444433

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.83  E-value=2.8  Score=43.48  Aligned_cols=177  Identities=12%  Similarity=0.064  Sum_probs=99.1

Q ss_pred             CeEEecCCeEEEEEC----CeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeE-EEEeC
Q 006913           82 APVHGGTGEVYIVAE----NRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRAL-FAFMT  156 (626)
Q Consensus        82 sp~iD~dG~IwVgT~----ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL-~a~d~  156 (626)
                      .+..+.+|.+|.+|.    ..|..+|+.+++.     .......      ....+=-+...++.||.-|+..++ +.||+
T Consensus        49 GL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~-----~~~~~l~------~~~FgEGit~~~d~l~qLTWk~~~~f~yd~  117 (264)
T PF05096_consen   49 GLEFLDDGTLYESTGLYGQSSLRKVDLETGKV-----LQSVPLP------PRYFGEGITILGDKLYQLTWKEGTGFVYDP  117 (264)
T ss_dssp             EEEEEETTEEEEEECSTTEEEEEEEETTTSSE-----EEEEE-T------TT--EEEEEEETTEEEEEESSSSEEEEEET
T ss_pred             cEEecCCCEEEEeCCCCCcEEEEEEECCCCcE-----EEEEECC------ccccceeEEEECCEEEEEEecCCeEEEEcc
Confidence            455557899999992    3789999998752     2111111      112222233457899999987554 67887


Q ss_pred             C-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcC--CC--CCcce
Q 006913          157 H-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDL--SS--FDKAF  231 (626)
Q Consensus       157 ~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~--~s--~~~v~  231 (626)
                      + -+.+-.+       .|..       ..   .-+..|  +..||++.....|+.+|+++-+..-....  .+  .....
T Consensus       118 ~tl~~~~~~-------~y~~-------EG---WGLt~d--g~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LN  178 (264)
T PF05096_consen  118 NTLKKIGTF-------PYPG-------EG---WGLTSD--GKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLN  178 (264)
T ss_dssp             TTTEEEEEE-------E-SS-------S-----EEEEC--SSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EE
T ss_pred             ccceEEEEE-------ecCC-------cc---eEEEcC--CCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcE
Confidence            5 4443332       1110       01   113445  67899998888999999987554433221  11  11111


Q ss_pred             eeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCC-------------CCCceeeEEEee-CCeEEEEE
Q 006913          232 TLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGP-------------LGSAEYAPVVDS-NGWISVGS  289 (626)
Q Consensus       232 sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~-------------l~~~~sspvvD~-dG~IWVGT  289 (626)
                      - .+-.+|.||.-......++.+|+.+|.+.-......             ...+...++.|+ .+++||..
T Consensus       179 E-LE~i~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  179 E-LEYINGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             E-EEEETTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             e-EEEEcCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            1 122489999988777799999999999875432210             012455666653 35666654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats

Probab=95.75  E-value=0.014  Score=37.66  Aligned_cols=22  Identities=14%  Similarity=-0.040  Sum_probs=18.5

Q ss_pred             ccCceEEEEEEecCCcEEEEEe
Q 006913          317 QSSPYWFHLLGPSIGLKAILCL  338 (626)
Q Consensus       317 lssp~V~~Il~DsdG~IwI~T~  338 (626)
                      ++++.|++|++|++|+|||+|.
T Consensus         2 L~~n~I~~i~~D~~G~lWigT~   23 (24)
T PF07494_consen    2 LPNNNIYSIYEDSDGNLWIGTY   23 (24)
T ss_dssp             BSSSCEEEEEE-TTSCEEEEET
T ss_pred             CCCCeEEEEEEcCCcCEEEEeC
Confidence            5778899999999999999873

These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=95.55  E-value=0.032  Score=40.40  Aligned_cols=28  Identities=32%  Similarity=0.685  Sum_probs=20.0

Q ss_pred             cccceEEEcCCCeEEEEcCCCeEEEEeCCC
Q 006913          186 FTSVPVIDQCEGSIYISNTQGELYSLSAHS  215 (626)
Q Consensus       186 i~sspviD~~dG~LwIGT~~GgL~~ld~~t  215 (626)
                      +..+|+++  ++.||+++.+|.|+++|+++
T Consensus        13 ~~~~~~v~--~g~vyv~~~dg~l~ald~~t   40 (40)
T PF13570_consen   13 IWSSPAVA--GGRVYVGTGDGNLYALDAAT   40 (40)
T ss_dssp             --S--EEC--TSEEEEE-TTSEEEEEETT-
T ss_pred             cCcCCEEE--CCEEEEEcCCCEEEEEeCCC
Confidence            34668887  89999999999999999864

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=95.50  E-value=3.2  Score=41.91  Aligned_cols=230  Identities=11%  Similarity=0.110  Sum_probs=117.3

Q ss_pred             eeEEeeCCE-EEEEe--CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCe-EEEEE--CCeEEEEECCCCccccce
Q 006913           41 KPLIGEDGK-IYACS--EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGE-VYIVA--ENRVLKVDLLKIGTSESA  113 (626)
Q Consensus        41 spvid~dG~-IwIgS--dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~-IwVgT--~ggL~~id~~~~~~~~~~  113 (626)
                      .+....+|. +|++.  ++.+..+|. +++....+....  . ...+..+.+|+ +|++.  ++.|..+|..+..     
T Consensus        35 ~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~-----  106 (300)
T TIGR03866        35 GITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP--D-PELFALHPNGKILYIANEDDNLVTVIDIETRK-----  106 (300)
T ss_pred             ceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC--C-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCe-----
Confidence            355555664 56654  467888897 666543333221  1 22344556665 66654  5778888987642     


Q ss_pred             eEEEecCCCCCCCCCCeeEEEEEEcCCeEEE-EEcCC-eEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccce
Q 006913          114 TQVFYGTGSGKGGTGAIAGIAVSTSSSSVYI-NVKGR-ALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVP  190 (626)
Q Consensus       114 ~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwI-gT~~g-GL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~ssp  190 (626)
                      ....+..       +.....+....+|.+++ +..++ -+..+|.. ++......     .+           .. ...+
T Consensus       107 ~~~~~~~-------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-----~~-----------~~-~~~~  162 (300)
T TIGR03866       107 VLAEIPV-------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-----VD-----------QR-PRFA  162 (300)
T ss_pred             EEeEeeC-------CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-----cC-----------CC-ccEE
Confidence            1111110       00112233345565554 43332 24556764 44432210     00           00 1123


Q ss_pred             EEEcCCCeEEEEcC-CCeEEEEeCCCCeEEEEEcC--CCC----CcceeeeeecCCe-EEEEEcCCCEEEEEECCCCcEE
Q 006913          191 VIDQCEGSIYISNT-QGELYSLSAHSPYFNWIQDL--SSF----DKAFTLTPGNNGY-LYVTIPVRALVLALDTSSGNIL  262 (626)
Q Consensus       191 viD~~dG~LwIGT~-~GgL~~ld~~tg~~~w~~~~--~s~----~~v~sI~~D~dG~-LwVGT~~gG~l~alD~~tG~~~  262 (626)
                      ...+.+..||+++. ++.++.+|.++++..-....  ...    .....+..+.+|+ +|++......+..+|..+++..
T Consensus       163 ~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~  242 (300)
T TIGR03866       163 EFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL  242 (300)
T ss_pred             EECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence            34431345667653 67899999988765322211  110    0122344556664 5776544457888898888765


Q ss_pred             EEEecCCCCCceeeEEEeeCCe-EEEEE-cCCeEEEEcCC-CCEEE
Q 006913          263 WHKSVGPLGSAEYAPVVDSNGW-ISVGS-LDGLLYSFSPS-GVLNK  305 (626)
Q Consensus       263 w~~~~~~l~~~~sspvvD~dG~-IWVGT-~~gGLy~~d~~-g~~~~  305 (626)
                      -....+   .....+...++|. |+++. .++.|..+|.. ++.+.
T Consensus       243 ~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~  285 (300)
T TIGR03866       243 DYLLVG---QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIK  285 (300)
T ss_pred             EEEEeC---CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence            433222   1233455665664 66654 46788899875 44433

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=95.44  E-value=0.96  Score=51.03  Aligned_cols=157  Identities=18%  Similarity=0.259  Sum_probs=78.7

Q ss_pred             CcEEEEcCCCCEEEEEeCCCCCCcccCeEEecCCeEEEEECCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEE
Q 006913           56 KTLFAFESNGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVAENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAV  135 (626)
Q Consensus        56 ggL~a~d~~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~  135 (626)
                      ...+++|.+|.++|.......  ....+..-.+|.++++..+.+..+|..+.      ..+.+......   ...-....
T Consensus       128 ~~~~~iD~~G~Vrw~~~~~~~--~~~~~~~l~nG~ll~~~~~~~~e~D~~G~------v~~~~~l~~~~---~~~HHD~~  196 (477)
T PF05935_consen  128 SYTYLIDNNGDVRWYLPLDSG--SDNSFKQLPNGNLLIGSGNRLYEIDLLGK------VIWEYDLPGGY---YDFHHDID  196 (477)
T ss_dssp             EEEEEEETTS-EEEEE-GGGT----SSEEE-TTS-EEEEEBTEEEEE-TT--------EEEEEE--TTE---E-B-S-EE
T ss_pred             ceEEEECCCccEEEEEccCcc--ccceeeEcCCCCEEEecCCceEEEcCCCC------EEEeeecCCcc---cccccccE
Confidence            468999999999998866421  12124456889999998999999999875      23333221100   00112233


Q ss_pred             EEcCCeEEEEEc--------------CCeEEEEeCCCcEEEEECCccccc-cccc----------ccccCCCCCccc-cc
Q 006913          136 STSSSSVYINVK--------------GRALFAFMTHGQLLWSAGPVLDQL-GYRQ----------GCTKTDVDCYFT-SV  189 (626)
Q Consensus       136 ~d~dG~LwIgT~--------------~gGL~a~d~~G~~~w~~~~~~~~~-~~~~----------~~~~~l~~~~i~-ss  189 (626)
                      ...+|++.+-+.              ...|+.+|++|+++|.... ...+ +++.          ........++++ .+
T Consensus       197 ~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~-~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Ns  275 (477)
T PF05935_consen  197 ELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDF-FDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINS  275 (477)
T ss_dssp             E-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEG-GGTS-TT--TTGGT--SSSSS-SSTTSBS--EEE
T ss_pred             ECCCCCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEeh-HHhCCcccccccccccccccccCCCCCCccccCc
Confidence            445555443222              4678899977999987411 0111 1111          000001112232 34


Q ss_pred             eEEEcCCCeEEEEcCC-CeEEEEeCCCCeEEEEEcC
Q 006913          190 PVIDQCEGSIYISNTQ-GELYSLSAHSPYFNWIQDL  224 (626)
Q Consensus       190 pviD~~dG~LwIGT~~-GgL~~ld~~tg~~~w~~~~  224 (626)
                      +.+|+.++.|.+.... ..|+.+|.+++++.|....
T Consensus       276 i~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~  311 (477)
T PF05935_consen  276 IDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGP  311 (477)
T ss_dssp             EEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-
T ss_pred             cEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCC
Confidence            5556447889998874 4899999999999998643

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=95.40  E-value=3.9  Score=42.17  Aligned_cols=203  Identities=14%  Similarity=0.118  Sum_probs=97.9

Q ss_pred             ceeeeeEEee-CCEEEEEeC--CcEEEEcCCCCEEEEEeCCCCCCcccCeEEecCCeEEEEE--CCeEEEEECCCCccc-
Q 006913           37 FRLSKPLIGE-DGKIYACSE--KTLFAFESNGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA--ENRVLKVDLLKIGTS-  110 (626)
Q Consensus        37 ~~~Sspvid~-dG~IwIgSd--ggL~a~d~~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT--~ggL~~id~~~~~~~-  110 (626)
                      .-.|+...+. .+.||+.++  +.|+.++.+|+++..+++.... -.-.+..-.+|.+.+..  .+.|+.++....... 
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~-D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~  100 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFG-DYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSL  100 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-S-SEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred             CCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCC-CceeEEEECCCEEEEEEcCCCcEEEEEEecccccc
Confidence            3478888876 588999884  5799999999988777664321 12233444667666666  577887766322110 


Q ss_pred             cce--eEEEecCCCCCCCCCCeeEEEEEE-cCCeEEEEEcC--CeEEEEeC--C-CcEEEEECCcccccccccccccCCC
Q 006913          111 ESA--TQVFYGTGSGKGGTGAIAGIAVST-SSSSVYINVKG--RALFAFMT--H-GQLLWSAGPVLDQLGYRQGCTKTDV  182 (626)
Q Consensus       111 ~~~--~~~~~~~~~~~~~~~~~I~s~~~d-~dG~LwIgT~~--gGL~a~d~--~-G~~~w~~~~~~~~~~~~~~~~~~l~  182 (626)
                      ...  ..+..+..   ...+.-+..++.| ..++++++-..  .+|+.++.  . .........   .+.  .   ....
T Consensus       101 ~~~~~~~~~l~~~---~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~---~~~--~---~~~~  169 (248)
T PF06977_consen  101 DRADVQKISLGFP---NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQ---DLD--D---DKLF  169 (248)
T ss_dssp             -EEEEEEEE---S------SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-H---HHH------HT--
T ss_pred             chhhceEEecccc---cCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccc---ccc--c---ccce
Confidence            000  11111111   0111223444455 45788888654  46777774  2 222111100   000  0   0000


Q ss_pred             CCccccceEEEcCCCeEEEEcC-CCeEEEEeCCCCeEEEEEcCCC--------CCcceeeeeecCCeEEEEEcCCCEEEE
Q 006913          183 DCYFTSVPVIDQCEGSIYISNT-QGELYSLSAHSPYFNWIQDLSS--------FDKAFTLTPGNNGYLYVTIPVRALVLA  253 (626)
Q Consensus       183 ~~~i~sspviD~~dG~LwIGT~-~GgL~~ld~~tg~~~w~~~~~s--------~~~v~sI~~D~dG~LwVGT~~gG~l~a  253 (626)
                      -.. .+.+.+++..|++||=+. ..-|..+|.++ ++.-......        +...-.|+.|.+|+|||.+.. ..+|.
T Consensus       170 ~~d-~S~l~~~p~t~~lliLS~es~~l~~~d~~G-~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEp-Nlfy~  246 (248)
T PF06977_consen  170 VRD-LSGLSYDPRTGHLLILSDESRLLLELDRQG-RVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEP-NLFYR  246 (248)
T ss_dssp             SS----EEEEETTTTEEEEEETTTTEEEEE-TT---EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETT-TEEEE
T ss_pred             ecc-ccceEEcCCCCeEEEEECCCCeEEEECCCC-CEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCC-ceEEE
Confidence            111 255667766788887554 56788899665 5544333221        223456889999999999854 46665


Q ss_pred             E
Q 006913          254 L  254 (626)
Q Consensus       254 l  254 (626)
                      +
T Consensus       247 f  247 (248)
T PF06977_consen  247 F  247 (248)
T ss_dssp             E
T ss_pred             e
Confidence            4

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=95.19  E-value=4.9  Score=42.17  Aligned_cols=246  Identities=14%  Similarity=0.126  Sum_probs=125.0

Q ss_pred             CccccccCCceeeeeEEeeCCEEEEE-e-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE---CCeEEE
Q 006913           28 AKVPYRRSAFRLSKPLIGEDGKIYAC-S-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA---ENRVLK  101 (626)
Q Consensus        28 ~~~~~~~~~~~~Sspvid~dG~IwIg-S-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT---~ggL~~  101 (626)
                      ||+.-...+.+. +.-.+.+|...+. + ++.|..||. +|+..-.+.... .++....+...+..+..++   +..|.+
T Consensus         7 ak~f~~~~~~i~-sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skk-yG~~~~~Fth~~~~~i~sStk~d~tIry   84 (311)
T KOG1446|consen    7 AKVFRETNGKIN-SLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKK-YGVDLACFTHHSNTVIHSSTKEDDTIRY   84 (311)
T ss_pred             ccccccCCCcee-EEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeeccc-ccccEEEEecCCceEEEccCCCCCceEE
Confidence            344333334444 4444467766664 4 568999998 887764443221 1122222333444444444   568888


Q ss_pred             EECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccC
Q 006913          102 VDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKT  180 (626)
Q Consensus       102 id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~  180 (626)
                      ++..+++.    +.++-      ++...++.+.+...++...-++.++-|...|.. -+..-..              ..
T Consensus        85 Lsl~dNky----lRYF~------GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l--------------~~  140 (311)
T KOG1446|consen   85 LSLHDNKY----LRYFP------GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL--------------NL  140 (311)
T ss_pred             EEeecCce----EEEcC------CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE--------------ec
Confidence            88877642    23321      122334444444445444445666677777753 1110000              00


Q ss_pred             CCCCccccceEEEcCCCeEEEEcC-CCeEEEEeCCC---CeEEEE-EcCCCCCcceeeeeecCC-eEEEEEcCCCEEEEE
Q 006913          181 DVDCYFTSVPVIDQCEGSIYISNT-QGELYSLSAHS---PYFNWI-QDLSSFDKAFTLTPGNNG-YLYVTIPVRALVLAL  254 (626)
Q Consensus       181 l~~~~i~sspviD~~dG~LwIGT~-~GgL~~ld~~t---g~~~w~-~~~~s~~~v~sI~~D~dG-~LwVGT~~gG~l~al  254 (626)
                       ..   ...++.|+ +|-|+.... .+.|-.||.+.   |-+.-. ...+.......+-...|| .|.+.| ..+.++.+
T Consensus       141 -~~---~pi~AfDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT-~~s~~~~l  214 (311)
T KOG1446|consen  141 -SG---RPIAAFDP-EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST-NASFIYLL  214 (311)
T ss_pred             -CC---CcceeECC-CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe-CCCcEEEE
Confidence             01   11256786 777764433 33676777654   111111 110111112234445677 466666 56788889


Q ss_pred             ECCCCcEEEEEecCCC-CCceeeEEEeeCCeEEE-EEcCCeEEEEcCC-CCEEE
Q 006913          255 DTSSGNILWHKSVGPL-GSAEYAPVVDSNGWISV-GSLDGLLYSFSPS-GVLNK  305 (626)
Q Consensus       255 D~~tG~~~w~~~~~~l-~~~~sspvvD~dG~IWV-GT~~gGLy~~d~~-g~~~~  305 (626)
                      |.-+|.....+...+. +....+....+++...+ |..+|.|+.++.. |....
T Consensus       215 DAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~  268 (311)
T KOG1446|consen  215 DAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVA  268 (311)
T ss_pred             EccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEee
Confidence            9999997765533321 11222334445666554 5566899999864 55443

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=94.83  E-value=1.8  Score=48.90  Aligned_cols=150  Identities=17%  Similarity=0.235  Sum_probs=83.9

Q ss_pred             CCeEEEEEc-----CCeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeC
Q 006913          139 SSSVYINVK-----GRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSA  213 (626)
Q Consensus       139 dG~LwIgT~-----~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~  213 (626)
                      .+.|++.+.     ....+++|.+|.++|....     .  .    .     .......-+ +|.++++.. ..++.+|.
T Consensus       113 ~~gl~~~~~~~~~~~~~~~~iD~~G~Vrw~~~~-----~--~----~-----~~~~~~~l~-nG~ll~~~~-~~~~e~D~  174 (477)
T PF05935_consen  113 EDGLYFVNGNDWDSSSYTYLIDNNGDVRWYLPL-----D--S----G-----SDNSFKQLP-NGNLLIGSG-NRLYEIDL  174 (477)
T ss_dssp             TT-EEEEEETT--BEEEEEEEETTS-EEEEE-G-----G--G----T-------SSEEE-T-TS-EEEEEB-TEEEEE-T
T ss_pred             CCcEEEEeCCCCCCCceEEEECCCccEEEEEcc-----C--c----c-----ccceeeEcC-CCCEEEecC-CceEEEcC
Confidence            344555444     4678999999999998611     0  0    0     001122333 889988876 67999999


Q ss_pred             CCCeEEEEEcCCCC--CcceeeeeecCCeEEEEEc-------------CCCEEEEEECCCCcEEEEEecC----C--C--
Q 006913          214 HSPYFNWIQDLSSF--DKAFTLTPGNNGYLYVTIP-------------VRALVLALDTSSGNILWHKSVG----P--L--  270 (626)
Q Consensus       214 ~tg~~~w~~~~~s~--~~v~sI~~D~dG~LwVGT~-------------~gG~l~alD~~tG~~~w~~~~~----~--l--  270 (626)
                      -+ ++.|.+..+..  .....+.+..+|++.+-..             ....++.+| .+|++.|.....    +  .  
T Consensus       175 ~G-~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~  252 (477)
T PF05935_consen  175 LG-KVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTV  252 (477)
T ss_dssp             T---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TT
T ss_pred             CC-CEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccc
Confidence            76 78887765541  1223456677876555432             124688899 899999874221    0  0  


Q ss_pred             -------------C----CceeeEEEee-CCeEEEEEcCC-eEEEEc-CCCCEEEEee
Q 006913          271 -------------G----SAEYAPVVDS-NGWISVGSLDG-LLYSFS-PSGVLNKFSK  308 (626)
Q Consensus       271 -------------~----~~~sspvvD~-dG~IWVGT~~g-GLy~~d-~~g~~~~~~~  308 (626)
                                   .    -...++..++ ++.|.+..... .|+.+| .++++.|..-
T Consensus       253 ~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg  310 (477)
T PF05935_consen  253 LKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILG  310 (477)
T ss_dssp             GGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES
T ss_pred             cccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeC
Confidence                         0    0245677776 78999999765 999999 5688999754

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PRK13684 Ycf48-like protein; Provisional

Probab=94.83  E-value=6.9  Score=41.99  Aligned_cols=104  Identities=14%  Similarity=0.165  Sum_probs=57.2

Q ss_pred             eEEEcCCCeEEEEcCCCeEEEE-eCCCCeEEEEEc-CCC---CCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEE
Q 006913          190 PVIDQCEGSIYISNTQGELYSL-SAHSPYFNWIQD-LSS---FDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWH  264 (626)
Q Consensus       190 pviD~~dG~LwIGT~~GgL~~l-d~~tg~~~w~~~-~~s---~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~  264 (626)
                      +.... ++.+|+....| ...+ ..++| ..|... .+.   ...+.+++...++.+|++.. .|.++.-  .++-..|+
T Consensus       220 i~~~~-~g~~~~vg~~G-~~~~~s~d~G-~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~-~G~v~~S--~d~G~tW~  293 (334)
T PRK13684        220 MGFQP-DGNLWMLARGG-QIRFNDPDDL-ESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGG-NGTLLVS--KDGGKTWE  293 (334)
T ss_pred             eeEcC-CCCEEEEecCC-EEEEccCCCC-CccccccCCccccccceeeEEEcCCCCEEEEcC-CCeEEEe--CCCCCCCe
Confidence            34443 77888775554 5555 34554 457632 121   11244556666888999875 4555432  24445676


Q ss_pred             Eec--CCCCCceeeEEEeeCCeEEEEEcCCeEEEEcC
Q 006913          265 KSV--GPLGSAEYAPVVDSNGWISVGSLDGLLYSFSP  299 (626)
Q Consensus       265 ~~~--~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~  299 (626)
                      ...  .........++...++..|+....|-|..++.
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~~  330 (334)
T PRK13684        294 KDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYVG  330 (334)
T ss_pred             ECCcCCCCCcceEEEEEeCCCceEEECCCceEEEecC
Confidence            432  11111234455555788888887777766654

>PF01011 PQQ: PQQ enzyme repeat family

Probab=94.73  E-value=0.072  Score=38.20  Aligned_cols=29  Identities=28%  Similarity=0.587  Sum_probs=26.2

Q ss_pred             CeEEEEcCCCeEEEEeCCCCeEEEEEcCC
Q 006913          197 GSIYISNTQGELYSLSAHSPYFNWIQDLS  225 (626)
Q Consensus       197 G~LwIGT~~GgL~~ld~~tg~~~w~~~~~  225 (626)
                      |.||+++.+|.|+++|.++|++.|.....
T Consensus         1 ~~v~~~~~~g~l~AlD~~TG~~~W~~~~~   29 (38)
T PF01011_consen    1 GRVYVGTPDGYLYALDAKTGKVLWKFQTG   29 (38)
T ss_dssp             TEEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred             CEEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence            57999999999999999999999997754

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=94.57  E-value=11  Score=43.27  Aligned_cols=194  Identities=15%  Similarity=0.149  Sum_probs=108.7

Q ss_pred             ccCeEEecCCeEEEEE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC-
Q 006913           80 GTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH-  157 (626)
Q Consensus        80 ~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~-  157 (626)
                      +.+++....|+|+=.. ++.|.-+|+.+.+     ..+.+..     ..+.+.+....+.+..+-||.++|-|+.++.. 
T Consensus        72 IE~L~W~e~~RLFS~g~sg~i~EwDl~~lk-----~~~~~d~-----~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p  141 (691)
T KOG2048|consen   72 IESLAWAEGGRLFSSGLSGSITEWDLHTLK-----QKYNIDS-----NGGAIWSIAINPENTILAIGCDDGVLYDFSIGP  141 (691)
T ss_pred             eeeEEEccCCeEEeecCCceEEEEecccCc-----eeEEecC-----CCcceeEEEeCCccceEEeecCCceEEEEecCC
Confidence            4455555567776544 6777778877753     2333221     11233333444666677888777656666654 


Q ss_pred             CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCe-EEEEcCCCeEEEEeCCCCeEEEEEcC--CCC-----Cc
Q 006913          158 GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGS-IYISNTQGELYSLSAHSPYFNWIQDL--SSF-----DK  229 (626)
Q Consensus       158 G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~-LwIGT~~GgL~~ld~~tg~~~w~~~~--~s~-----~~  229 (626)
                      +++....     .++ ++   .    . -..++.-++ ++. |..|+.+|-|.+.|...++.....+.  ...     ..
T Consensus       142 ~~I~~~r-----~l~-rq---~----s-RvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~i  206 (691)
T KOG2048|consen  142 DKITYKR-----SLM-RQ---K----S-RVLSLSWNP-TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTI  206 (691)
T ss_pred             ceEEEEe-----ecc-cc---c----c-eEEEEEecC-CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceE
Confidence            6665432     111 11   0    0 012233343 455 88888887788999998877653221  111     12


Q ss_pred             ceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeC-CeEEEEEcCCeEEEEcCCC
Q 006913          230 AFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSN-GWISVGSLDGLLYSFSPSG  301 (626)
Q Consensus       230 v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~d-G~IWVGT~~gGLy~~d~~g  301 (626)
                      +.++..-.++.|--|.. .|.+...|...|+.......-  ...+.+++++.+ +.+++++.++.++.|..++
T Consensus       207 VWSv~~Lrd~tI~sgDS-~G~V~FWd~~~gTLiqS~~~h--~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~  276 (691)
T KOG2048|consen  207 VWSVLFLRDSTIASGDS-AGTVTFWDSIFGTLIQSHSCH--DADVLALAVADNEDRVFSAGVDPKIIQYSLTT  276 (691)
T ss_pred             EEEEEEeecCcEEEecC-CceEEEEcccCcchhhhhhhh--hcceeEEEEcCCCCeEEEccCCCceEEEEecC
Confidence            34444456777777764 456666676666554222111  112344655544 7899999999999998653

>smart00564 PQQ beta-propeller repeat

Probab=94.54  E-value=0.087  Score=36.03  Aligned_cols=27  Identities=33%  Similarity=0.784  Sum_probs=24.9

Q ss_pred             CCeEEEEcCCCeEEEEeCCCCeEEEEE
Q 006913          196 EGSIYISNTQGELYSLSAHSPYFNWIQ  222 (626)
Q Consensus       196 dG~LwIGT~~GgL~~ld~~tg~~~w~~  222 (626)
                      ++.+|+++.+|.|+++|.++|+..|..
T Consensus         6 ~~~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        6 DGTVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             CCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence            678999999999999999999999974

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=94.44  E-value=8.4  Score=41.27  Aligned_cols=60  Identities=20%  Similarity=0.266  Sum_probs=38.1

Q ss_pred             cCCeEEEEEcCCCEEEEEECCCCcEEE-EEe-cCCCCCceeeEEEeeCCeEEEEEc-CCeEEE
Q 006913          237 NNGYLYVTIPVRALVLALDTSSGNILW-HKS-VGPLGSAEYAPVVDSNGWISVGSL-DGLLYS  296 (626)
Q Consensus       237 ~dG~LwVGT~~gG~l~alD~~tG~~~w-~~~-~~~l~~~~sspvvD~dG~IWVGT~-~gGLy~  296 (626)
                      -+|.++++...++.|+.+...++.... ... ..........+.+++||.|||.+. +|.||+
T Consensus       269 ~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iyR  331 (331)
T PF07995_consen  269 YRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIYR  331 (331)
T ss_dssp             GTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEEE
T ss_pred             ccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEeC
Confidence            377899998777788888765443332 222 222222355678889999999986 566664

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=94.43  E-value=6.5  Score=39.98  Aligned_cols=177  Identities=12%  Similarity=0.028  Sum_probs=98.0

Q ss_pred             CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEE-EcCCeEEEEEcCCeEEEEeCC-C--cEEEEECCccccc
Q 006913           96 ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVS-TSSSSVYINVKGRALFAFMTH-G--QLLWSAGPVLDQL  171 (626)
Q Consensus        96 ~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~-d~dG~LwIgT~~gGL~a~d~~-G--~~~w~~~~~~~~~  171 (626)
                      +..++..|.++++     +...+.     .+.+ .++.+-. ....-+.-|+.+..+-++|-. .  +++-.+    +. 
T Consensus        80 Dk~v~vwDV~TGk-----v~Rr~r-----gH~a-qVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQil----de-  143 (307)
T KOG0316|consen   80 DKAVQVWDVNTGK-----VDRRFR-----GHLA-QVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQIL----DE-  143 (307)
T ss_pred             CceEEEEEcccCe-----eeeecc-----cccc-eeeEEEecCcceEEEeccccceeEEEEcccCCCCccchh----hh-
Confidence            5678888988874     122221     1222 3333322 233334556777777777743 1  111110    00 


Q ss_pred             ccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEE
Q 006913          172 GYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALV  251 (626)
Q Consensus       172 ~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l  251 (626)
                                ..+. .+++.+.  +..|..|+.+|.+..||.+-|.+.--+-   ...+.++...+||+--++..-++.+
T Consensus       144 ----------a~D~-V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~---g~pit~vs~s~d~nc~La~~l~stl  207 (307)
T KOG0316|consen  144 ----------AKDG-VSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYF---GHPITSVSFSKDGNCSLASSLDSTL  207 (307)
T ss_pred             ----------hcCc-eeEEEec--ccEEEeeccCCcEEEEEeecceeehhhc---CCcceeEEecCCCCEEEEeecccee
Confidence                      0011 2344443  5678888889999999998886543211   1234566666777544443345688


Q ss_pred             EEEECCCCcEEEEEecCCCCCc--eeeEEEeeCCeEEEEEcCCeEEEEcC-CCCEEE
Q 006913          252 LALDTSSGNILWHKSVGPLGSA--EYAPVVDSNGWISVGSLDGLLYSFSP-SGVLNK  305 (626)
Q Consensus       252 ~alD~~tG~~~w~~~~~~l~~~--~sspvvD~dG~IWVGT~~gGLy~~d~-~g~~~~  305 (626)
                      -.+|..||+++-.+.-....++  .+ .+..++-++.-|+.+|.+|.+|. ++.+..
T Consensus       208 rLlDk~tGklL~sYkGhkn~eykldc-~l~qsdthV~sgSEDG~Vy~wdLvd~~~~s  263 (307)
T KOG0316|consen  208 RLLDKETGKLLKSYKGHKNMEYKLDC-CLNQSDTHVFSGSEDGKVYFWDLVDETQIS  263 (307)
T ss_pred             eecccchhHHHHHhcccccceeeeee-eecccceeEEeccCCceEEEEEeccceeee
Confidence            8899999988643321110111  22 23344678888999999999996 344443

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.32  E-value=5.2  Score=41.52  Aligned_cols=100  Identities=13%  Similarity=0.024  Sum_probs=67.1

Q ss_pred             CCeEEEEcCC---CeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCC
Q 006913          196 EGSIYISNTQ---GELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGS  272 (626)
Q Consensus       196 dG~LwIGT~~---GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~  272 (626)
                      +|.||.+|..   ..|..+|.++|++....+.+....--.++. .+++||.-|...+..+.+|+.+-+..-++....  .
T Consensus        55 ~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~-~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~--E  131 (264)
T PF05096_consen   55 DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITI-LGDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPG--E  131 (264)
T ss_dssp             TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEE-ETTEEEEEESSSSEEEEEETTTTEEEEEEE-SS--S
T ss_pred             CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEE-ECCEEEEEEecCCeEEEEccccceEEEEEecCC--c
Confidence            7999999863   358899999999887766553111112333 367999999988899999998877765544431  1


Q ss_pred             ceeeEEEeeCCeEEEEEcCCeEEEEcCC
Q 006913          273 AEYAPVVDSNGWISVGSLDGLLYSFSPS  300 (626)
Q Consensus       273 ~~sspvvD~dG~IWVGT~~gGLy~~d~~  300 (626)
                      -. .++.| +..+|+......|+.+||.
T Consensus       132 GW-GLt~d-g~~Li~SDGS~~L~~~dP~  157 (264)
T PF05096_consen  132 GW-GLTSD-GKRLIMSDGSSRLYFLDPE  157 (264)
T ss_dssp             ---EEEEC-SSCEEEE-SSSEEEEE-TT
T ss_pred             ce-EEEcC-CCEEEEECCccceEEECCc
Confidence            12 24455 5678888777899999985

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=94.02  E-value=2.5  Score=46.45  Aligned_cols=138  Identities=9%  Similarity=-0.009  Sum_probs=83.3

Q ss_pred             eEEEEcCCCeEEEEeCCCCeEEEEEcCCCCC--cceeeeeecCCe-EEEEEcCCCEEEEEECCCCcEEEEEecCCCCCce
Q 006913          198 SIYISNTQGELYSLSAHSPYFNWIQDLSSFD--KAFTLTPGNNGY-LYVTIPVRALVLALDTSSGNILWHKSVGPLGSAE  274 (626)
Q Consensus       198 ~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~--~v~sI~~D~dG~-LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~  274 (626)
                      .|+.++...-+|.||..+.++.-..+..+..  .+..+.+..++. |-+.. ..|.|+.+-.+|+..+....+++   .+
T Consensus       272 ~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G-~~G~I~lLhakT~eli~s~KieG---~v  347 (514)
T KOG2055|consen  272 VIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAG-NNGHIHLLHAKTKELITSFKIEG---VV  347 (514)
T ss_pred             EEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcc-cCceEEeehhhhhhhhheeeecc---EE
Confidence            5777777788999999998876554433211  223334445554 33333 35788888888887766555542   34


Q ss_pred             eeEEEeeCC-eEEEEEcCCeEEEEcCCCC-EEEEeeccCCCCccccCceEEEEEEecCCcEEEEEeeecCeeEEe
Q 006913          275 YAPVVDSNG-WISVGSLDGLLYSFSPSGV-LNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLMVVGQFSSL  347 (626)
Q Consensus       275 sspvvD~dG-~IWVGT~~gGLy~~d~~g~-~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~t~~Ggl~~~  347 (626)
                      +....++++ .||+....|-||.+|-... ......  +.+.  .   .-.+++...+|. |+++++..|.++.+
T Consensus       348 ~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~--D~G~--v---~gts~~~S~ng~-ylA~GS~~GiVNIY  414 (514)
T KOG2055|consen  348 SDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFV--DDGS--V---HGTSLCISLNGS-YLATGSDSGIVNIY  414 (514)
T ss_pred             eeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEe--ecCc--c---ceeeeeecCCCc-eEEeccCcceEEEe
Confidence            555565565 5777777789999997533 222111  1222  1   113456566777 67898887777654

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=93.76  E-value=3  Score=45.84  Aligned_cols=188  Identities=14%  Similarity=0.108  Sum_probs=101.5

Q ss_pred             eCCEEEEEe--CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE--CCeEEEEECCCC-----ccccceeE
Q 006913           46 EDGKIYACS--EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA--ENRVLKVDLLKI-----GTSESATQ  115 (626)
Q Consensus        46 ~dG~IwIgS--dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT--~ggL~~id~~~~-----~~~~~~~~  115 (626)
                      ..|...+++  .+.||.... +|.++......  ...+..+....||.+++..  ++.|.......-     .. .++..
T Consensus        91 n~G~~l~ag~i~g~lYlWelssG~LL~v~~aH--YQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~-~~~p~  167 (476)
T KOG0646|consen   91 NLGYFLLAGTISGNLYLWELSSGILLNVLSAH--YQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDH-SVKPL  167 (476)
T ss_pred             CCceEEEeecccCcEEEEEeccccHHHHHHhh--ccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCC-Cccce
Confidence            566655544  567888887 78764211111  1224455566778777754  666666543210     00 00001


Q ss_pred             EEecCCCCCCCCCCeeEEEEEE---cCCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceE
Q 006913          116 VFYGTGSGKGGTGAIAGIAVST---SSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPV  191 (626)
Q Consensus       116 ~~~~~~~~~~~~~~~I~s~~~d---~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspv  191 (626)
                      ..     +..+ .-.|..+.+.   .+.+||-++.++-+-++|.. |.++..+     .++.            ...+.+
T Consensus       168 ~~-----f~~H-tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti-----~fp~------------si~av~  224 (476)
T KOG0646|consen  168 HI-----FSDH-TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI-----TFPS------------SIKAVA  224 (476)
T ss_pred             ee-----eccC-cceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE-----ecCC------------cceeEE
Confidence            11     1111 1123333333   34578888888878888865 7766553     1121            124567


Q ss_pred             EEcCCCeEEEEcCCCeEEEEeCCCCe--EE----EEEc---------CCCCC--cceeeeeecCCeEEEEEcCCCEEEEE
Q 006913          192 IDQCEGSIYISNTQGELYSLSAHSPY--FN----WIQD---------LSSFD--KAFTLTPGNNGYLYVTIPVRALVLAL  254 (626)
Q Consensus       192 iD~~dG~LwIGT~~GgL~~ld~~tg~--~~----w~~~---------~~s~~--~v~sI~~D~dG~LwVGT~~gG~l~al  254 (626)
                      +|+.+-.+|||+.+|.|+..+..+-.  ..    -..+         .+..+  .+.++++..||++.+.....|.+...
T Consensus       225 lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvW  304 (476)
T KOG0646|consen  225 LDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVW  304 (476)
T ss_pred             EcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEE
Confidence            88767789999999988876654322  00    0000         01112  46778888889887766555555555


Q ss_pred             ECCCC
Q 006913          255 DTSSG  259 (626)
Q Consensus       255 D~~tG  259 (626)
                      |..+.
T Consensus       305 di~S~  309 (476)
T KOG0646|consen  305 DIYSK  309 (476)
T ss_pred             ecchH
Confidence            64443

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=93.51  E-value=12  Score=39.68  Aligned_cols=199  Identities=10%  Similarity=0.179  Sum_probs=104.4

Q ss_pred             cEEEEcCCCCEEEEEeCCC---------C-CCcccCeEEecCCeEEEE--------------------ECCeEEEEECCC
Q 006913           57 TLFAFESNGTIAWSLDLDF---------T-CNIGTAPVHGGTGEVYIV--------------------AENRVLKVDLLK  106 (626)
Q Consensus        57 gL~a~d~~G~~~W~~~~~~---------~-~~i~~sp~iD~dG~IwVg--------------------T~ggL~~id~~~  106 (626)
                      .++.+|.+.+.+|.+....         . ..-.+...+..+|++|+.                    -++.++.+|+++
T Consensus        26 ~~~~lD~~y~~i~~v~~~~~~~~~~~~~~~~~d~He~~it~~gt~lvt~~~~~~~dls~~gg~~~g~i~d~~~~EiDi~T  105 (299)
T PF14269_consen   26 SYVILDSSYEVIWNVSAGNDFGTPDGEPGSYADHHEFEITPDGTALVTAYNPTPADLSPVGGPEDGWILDDVFQEIDIET  105 (299)
T ss_pred             eEEEECCCCcEEEEEECCCcccccccccCccCCccceEEcCCCcEEEEEccceeccccccCcCCCccEecceeEEeccCC
Confidence            4788888888888776543         1 011334455677887771                    144677788887


Q ss_pred             Cccc--cceeEEEecCCCCC---------------CCCCCeeEEEEEEcCCeEEEEEcC-CeEEEEeC-CCcEEEEECCc
Q 006913          107 IGTS--ESATQVFYGTGSGK---------------GGTGAIAGIAVSTSSSSVYINVKG-RALFAFMT-HGQLLWSAGPV  167 (626)
Q Consensus       107 ~~~~--~~~~~~~~~~~~~~---------------~~~~~~I~s~~~d~dG~LwIgT~~-gGL~a~d~-~G~~~w~~~~~  167 (626)
                      ++..  |.+... +......               ...---+.++..+.+|.+.|.... .-|+++++ +|+++|..+..
T Consensus       106 gevlfeW~a~DH-~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~  184 (299)
T PF14269_consen  106 GEVLFEWSASDH-VDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGK  184 (299)
T ss_pred             CCEEEEEEhhhe-ecccccccccccccCCCcCCCCCCCccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCC
Confidence            6531  111000 0000000               000012445566778888887654 77999996 59999987442


Q ss_pred             -ccccccc---cccccCCCCCccccceEE---EcCCCeEEEEc-----------CCCeEEEEeCCCCeEEEEEcCC----
Q 006913          168 -LDQLGYR---QGCTKTDVDCYFTSVPVI---DQCEGSIYISN-----------TQGELYSLSAHSPYFNWIQDLS----  225 (626)
Q Consensus       168 -~~~~~~~---~~~~~~l~~~~i~sspvi---D~~dG~LwIGT-----------~~GgL~~ld~~tg~~~w~~~~~----  225 (626)
                       ...+...   ..-++.        +-.+   +. ++.|-+-.           ..+-++.+|+.+....+.....    
T Consensus       185 ~~~df~~~~~~f~~QHd--------ar~~~~~~~-~~~IslFDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~  255 (299)
T PF14269_consen  185 RNSDFTLPATNFSWQHD--------ARFLNESND-DGTISLFDNANSDFNGTEPSRGLVLELDPETMTVTLVREYSDHPD  255 (299)
T ss_pred             CCCcccccCCcEeeccC--------CEEeccCCC-CCEEEEEcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEeecCCC
Confidence             1111100   000000        0001   00 22222211           2456888999987666554321    


Q ss_pred             CC--CcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEe
Q 006913          226 SF--DKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKS  266 (626)
Q Consensus       226 s~--~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~  266 (626)
                      ..  .....+-.-.+|++.|+-...+.+.-++ .+|+++|...
T Consensus       256 ~~~s~~~G~~Q~L~nGn~li~~g~~g~~~E~~-~~G~vv~~~~  297 (299)
T PF14269_consen  256 GFYSPSQGSAQRLPNGNVLIGWGNNGRISEFT-PDGEVVWEAQ  297 (299)
T ss_pred             cccccCCCcceECCCCCEEEecCCCceEEEEC-CCCCEEEEEE
Confidence            11  0111223345789999865567788887 5788888754

>PF01011 PQQ: PQQ enzyme repeat family

Probab=93.40  E-value=0.18  Score=36.18  Aligned_cols=29  Identities=34%  Similarity=0.717  Sum_probs=25.4

Q ss_pred             CeEEEEEcCCCEEEEEECCCCcEEEEEecC
Q 006913          239 GYLYVTIPVRALVLALDTSSGNILWHKSVG  268 (626)
Q Consensus       239 G~LwVGT~~gG~l~alD~~tG~~~w~~~~~  268 (626)
                      |.+|+++ ..|.++++|..||+.+|.+..+
T Consensus         1 ~~v~~~~-~~g~l~AlD~~TG~~~W~~~~~   29 (38)
T PF01011_consen    1 GRVYVGT-PDGYLYALDAKTGKVLWKFQTG   29 (38)
T ss_dssp             TEEEEET-TTSEEEEEETTTTSEEEEEESS
T ss_pred             CEEEEeC-CCCEEEEEECCCCCEEEeeeCC
Confidence            5789996 4689999999999999998776

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.39  E-value=3.6  Score=44.63  Aligned_cols=136  Identities=15%  Similarity=0.210  Sum_probs=70.3

Q ss_pred             ceEEEcCCCeEEEEcC------------CC-eEEEEeCCC--CeEE-EEEcCCCCCcceeeeeecCCeEEEEEcCCCEEE
Q 006913          189 VPVIDQCEGSIYISNT------------QG-ELYSLSAHS--PYFN-WIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVL  252 (626)
Q Consensus       189 spviD~~dG~LwIGT~------------~G-gL~~ld~~t--g~~~-w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~  252 (626)
                      .++.|. +|+|||+..            .+ .|++++..+  |+.. +..-.........++...+| |||+..  ..++
T Consensus        18 ~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~--~~i~   93 (367)
T TIGR02604        18 AVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATP--PDIL   93 (367)
T ss_pred             eeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCC--CeEE
Confidence            356675 889999853            12 577775432  2321 21111112233456666678 999763  3566


Q ss_pred             EEECCCC------cEE-EEEecCCC----CCceeeEEEeeCCeEEEEEc--------------------CCeEEEEcCCC
Q 006913          253 ALDTSSG------NIL-WHKSVGPL----GSAEYAPVVDSNGWISVGSL--------------------DGLLYSFSPSG  301 (626)
Q Consensus       253 alD~~tG------~~~-w~~~~~~l----~~~~sspvvD~dG~IWVGT~--------------------~gGLy~~d~~g  301 (626)
                      .+.-.++      +.. .....+..    ......+..++||+||++..                    .++++++++++
T Consensus        94 ~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg  173 (367)
T TIGR02604        94 FLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDG  173 (367)
T ss_pred             EEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCC
Confidence            5632222      211 11111110    11244677888999999543                    15788998875


Q ss_pred             CEEEEeeccCCCCccccCceEEEEEEecCCcEEEE
Q 006913          302 VLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAIL  336 (626)
Q Consensus       302 ~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~  336 (626)
                      .......    .+  +-+  .+.+..+.+|++|+.
T Consensus       174 ~~~e~~a----~G--~rn--p~Gl~~d~~G~l~~t  200 (367)
T TIGR02604       174 GKLRVVA----HG--FQN--PYGHSVDSWGDVFFC  200 (367)
T ss_pred             CeEEEEe----cC--cCC--CccceECCCCCEEEE
Confidence            4332221    11  111  124566788999843

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>smart00564 PQQ beta-propeller repeat

Probab=93.28  E-value=0.17  Score=34.55  Aligned_cols=29  Identities=34%  Similarity=0.807  Sum_probs=24.3

Q ss_pred             EEeeCCEEEEEe-CCcEEEEcC-CCCEEEEE
Q 006913           43 LIGEDGKIYACS-EKTLFAFES-NGTIAWSL   71 (626)
Q Consensus        43 vid~dG~IwIgS-dggL~a~d~-~G~~~W~~   71 (626)
                      ++..+|.+|+++ ++.|+++|. +|+.+|.+
T Consensus         2 ~~~~~~~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        2 VVLSDGTVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             cEEECCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence            444678999988 678999998 99999975

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats

Probab=93.26  E-value=0.11  Score=33.57  Aligned_cols=20  Identities=25%  Similarity=0.438  Sum_probs=15.7

Q ss_pred             CceeeEEEeeCCeEEEEEcC
Q 006913          272 SAEYAPVVDSNGWISVGSLD  291 (626)
Q Consensus       272 ~~~sspvvD~dG~IWVGT~~  291 (626)
                      ..+.++++|++|+|||||.+
T Consensus         5 n~I~~i~~D~~G~lWigT~~   24 (24)
T PF07494_consen    5 NNIYSIYEDSDGNLWIGTYN   24 (24)
T ss_dssp             SCEEEEEE-TTSCEEEEETS
T ss_pred             CeEEEEEEcCCcCEEEEeCC
Confidence            34677999999999999963

These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=93.25  E-value=7.5  Score=42.13  Aligned_cols=34  Identities=21%  Similarity=0.291  Sum_probs=27.5

Q ss_pred             CCCeeEEEEEEcCCeEEEEEcCCeEEEEeCCCcE
Q 006913          127 TGAIAGIAVSTSSSSVYINVKGRALFAFMTHGQL  160 (626)
Q Consensus       127 ~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~G~~  160 (626)
                      .+...+.......|.|||+...-||+.+++.|+.
T Consensus       114 CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~  147 (376)
T KOG1520|consen  114 CGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGL  147 (376)
T ss_pred             cCCcceEEeccCCCeEEEEecceeeEEECCCCCc
Confidence            3566777777778899999888999999998654

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=93.08  E-value=21  Score=41.23  Aligned_cols=191  Identities=12%  Similarity=0.104  Sum_probs=112.2

Q ss_pred             CCeEEEEE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC-CcEEEEEC
Q 006913           88 TGEVYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH-GQLLWSAG  165 (626)
Q Consensus        88 dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~-G~~~w~~~  165 (626)
                      .+.+-++- ++.|-.+++.++.+   ...+..+      .....|..++=..+++|+-...++.|.-+|.. ++.+..++
T Consensus        37 S~~lAvsRt~g~IEiwN~~~~w~---~~~vi~g------~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d  107 (691)
T KOG2048|consen   37 SNQLAVSRTDGNIEIWNLSNNWF---LEPVIHG------PEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNID  107 (691)
T ss_pred             CCceeeeccCCcEEEEccCCCce---eeEEEec------CCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEec
Confidence            34455553 67777778876422   1112222      12234444444467888876666777788874 76655431


Q ss_pred             CcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCC-CCcceeeeeecCCe-EEE
Q 006913          166 PVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSS-FDKAFTLTPGNNGY-LYV  243 (626)
Q Consensus       166 ~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s-~~~v~sI~~D~dG~-LwV  243 (626)
                      .               .+..+ .++++.+.+..+-||..+|-++.++...+.+.....+.- -..+.++.-+.+|. |..
T Consensus       108 ~---------------~gg~I-Wsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~  171 (691)
T KOG2048|consen  108 S---------------NGGAI-WSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAG  171 (691)
T ss_pred             C---------------CCcce-eEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEe
Confidence            1               01122 344543336678899889888888888887776654432 13466666666776 777


Q ss_pred             EEcCCCEEEEEECCCCcEEEEE--ecCCCCC----ceeeEEEeeCCeEEEEEcCCeEEEEcCC-CCEE
Q 006913          244 TIPVRALVLALDTSSGNILWHK--SVGPLGS----AEYAPVVDSNGWISVGSLDGLLYSFSPS-GVLN  304 (626)
Q Consensus       244 GT~~gG~l~alD~~tG~~~w~~--~~~~l~~----~~sspvvD~dG~IWVGT~~gGLy~~d~~-g~~~  304 (626)
                      |+. +|.+-+.|.++|......  ....++.    .+-+...-+++.|--|...|.|-.+|+. |.+.
T Consensus       172 Gs~-Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLi  238 (691)
T KOG2048|consen  172 GSI-DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLI  238 (691)
T ss_pred             ccc-CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchh
Confidence            774 567888999888876521  2222221    2233444467888888766677677764 5443

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=93.07  E-value=15  Score=39.76  Aligned_cols=232  Identities=12%  Similarity=0.070  Sum_probs=115.8

Q ss_pred             CCEEEEEeC-----------CcEEEEcC-CCCEEEEEeCCCC-----CCcccCeEEecCCe-EEEEE---CCeEEEEECC
Q 006913           47 DGKIYACSE-----------KTLFAFES-NGTIAWSLDLDFT-----CNIGTAPVHGGTGE-VYIVA---ENRVLKVDLL  105 (626)
Q Consensus        47 dG~IwIgSd-----------ggL~a~d~-~G~~~W~~~~~~~-----~~i~~sp~iD~dG~-IwVgT---~ggL~~id~~  105 (626)
                      ...||++..           +.+-.+|. +++....+..+..     ........+..+|+ +|+..   ++.|..+|..
T Consensus        57 g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~  136 (352)
T TIGR02658        57 GSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLE  136 (352)
T ss_pred             CCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECC
Confidence            447898754           57889998 8888766665432     01112344566775 77764   5789999988


Q ss_pred             CCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEE--EeCCCcEEEEECCcccccccccccccCCCC
Q 006913          106 KIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFA--FMTHGQLLWSAGPVLDQLGYRQGCTKTDVD  183 (626)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a--~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~  183 (626)
                      .++.     .-...-     ..+.  ...+...+++...+ .++.+..  ++.+|+..-.... +  +.       . ..
T Consensus       137 ~~kv-----v~ei~v-----p~~~--~vy~t~e~~~~~~~-~Dg~~~~v~~d~~g~~~~~~~~-v--f~-------~-~~  192 (352)
T TIGR02658       137 GKAF-----VRMMDV-----PDCY--HIFPTANDTFFMHC-RDGSLAKVGYGTKGNPKIKPTE-V--FH-------P-ED  192 (352)
T ss_pred             CCcE-----EEEEeC-----CCCc--EEEEecCCccEEEe-ecCceEEEEecCCCceEEeeee-e--ec-------C-Cc
Confidence            7642     111110     0011  11111222222222 2333333  3344553321100 0  00       0 00


Q ss_pred             CccccceEEEc-CCCeEEEEcCCCeEEEEeCCCCeEE----EEE-cCC----CC--Ccceeeeeec-CCeEEEEEc----
Q 006913          184 CYFTSVPVIDQ-CEGSIYISNTQGELYSLSAHSPYFN----WIQ-DLS----SF--DKAFTLTPGN-NGYLYVTIP----  246 (626)
Q Consensus       184 ~~i~sspviD~-~dG~LwIGT~~GgL~~ld~~tg~~~----w~~-~~~----s~--~~v~sI~~D~-dG~LwVGT~----  246 (626)
                      ..+...|.+.. .+..+|+.. .|.|+.+|..+....    |.. ...    ..  .....++... .+++||...    
T Consensus       193 ~~v~~rP~~~~~dg~~~~vs~-eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~  271 (352)
T TIGR02658       193 EYLINHPAYSNKSGRLVWPTY-TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAK  271 (352)
T ss_pred             cccccCCceEcCCCcEEEEec-CCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCcc
Confidence            11223342111 155566764 589999995443322    321 111    00  0111245554 458999642    


Q ss_pred             -----CCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCe--EEEEEc-CCeEEEEcCC-CCEEEE
Q 006913          247 -----VRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGW--ISVGSL-DGLLYSFSPS-GVLNKF  306 (626)
Q Consensus       247 -----~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~--IWVGT~-~gGLy~~d~~-g~~~~~  306 (626)
                           .+..+..+|..+++..-....+.   ....+.+.+||.  +|+... ++.|..+|.. ++....
T Consensus       272 ~thk~~~~~V~ViD~~t~kvi~~i~vG~---~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~  337 (352)
T TIGR02658       272 WTHKTASRFLFVVDAKTGKRLRKIELGH---EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSS  337 (352)
T ss_pred             ccccCCCCEEEEEECCCCeEEEEEeCCC---ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEee
Confidence                 22478899999998877665542   233466766665  555543 3559999964 555443

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=92.54  E-value=20  Score=39.82  Aligned_cols=103  Identities=13%  Similarity=0.079  Sum_probs=55.5

Q ss_pred             CCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCcee
Q 006913          196 EGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEY  275 (626)
Q Consensus       196 dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~s  275 (626)
                      +|..+.--..|..+.+++..+...-....+.... ..+..+.+ .+.+|+.++..+-.+|..+|+....  ..+++++ -
T Consensus       331 ~Gd~ia~VSRGkaFi~~~~~~~~iqv~~~~~VrY-~r~~~~~e-~~vigt~dgD~l~iyd~~~~e~kr~--e~~lg~I-~  405 (668)
T COG4946         331 NGDYIALVSRGKAFIMRPWDGYSIQVGKKGGVRY-RRIQVDPE-GDVIGTNDGDKLGIYDKDGGEVKRI--EKDLGNI-E  405 (668)
T ss_pred             CCcEEEEEecCcEEEECCCCCeeEEcCCCCceEE-EEEccCCc-ceEEeccCCceEEEEecCCceEEEe--eCCccce-E
Confidence            3444433345667777776654332211111111 12334444 5778887666788888777765422  1223333 3


Q ss_pred             eEEEeeCCe-EEEEEcCCeEEEEcCC-CCE
Q 006913          276 APVVDSNGW-ISVGSLDGLLYSFSPS-GVL  303 (626)
Q Consensus       276 spvvD~dG~-IWVGT~~gGLy~~d~~-g~~  303 (626)
                      ++.++++|. +.++.....|+.+|-+ |+.
T Consensus       406 av~vs~dGK~~vvaNdr~el~vididngnv  435 (668)
T COG4946         406 AVKVSPDGKKVVVANDRFELWVIDIDNGNV  435 (668)
T ss_pred             EEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence            356666766 6666666677777753 544

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=92.47  E-value=20  Score=39.56  Aligned_cols=132  Identities=11%  Similarity=0.052  Sum_probs=69.1

Q ss_pred             CCeEEEEcCCCeEEEEeCCCCeEEEEEc-CCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcE----EEEE-ecCC
Q 006913          196 EGSIYISNTQGELYSLSAHSPYFNWIQD-LSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNI----LWHK-SVGP  269 (626)
Q Consensus       196 dG~LwIGT~~GgL~~ld~~tg~~~w~~~-~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~----~w~~-~~~~  269 (626)
                      ++.+++....|.++.-. +.|.-.|... .+....+..+....+|.+|+++. +|.++.-+ ..|..    .|.. ..+.
T Consensus       249 dG~~~~vg~~G~~~~s~-d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~-~G~l~~S~-d~G~~~~~~~f~~~~~~~  325 (398)
T PLN00033        249 DGDYVAVSSRGNFYLTW-EPGQPYWQPHNRASARRIQNMGWRADGGLWLLTR-GGGLYVSK-GTGLTEEDFDFEEADIKS  325 (398)
T ss_pred             CCCEEEEECCccEEEec-CCCCcceEEecCCCccceeeeeEcCCCCEEEEeC-CceEEEec-CCCCcccccceeecccCC
Confidence            56666655566555443 3445446532 22222345566677899999985 45555433 34431    1221 1111


Q ss_pred             CCCceeeEEEeeCCeEEEEEcCCeEEEEcCCCCEEEEeeccCCCCccccCceEEEEEEecCCcEEE
Q 006913          270 LGSAEYAPVVDSNGWISVGSLDGLLYSFSPSGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAI  335 (626)
Q Consensus       270 l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI  335 (626)
                      ....+.++...+++.+|+....|.++.-...|+. |..... .+.   ....++.++...++..|+
T Consensus       326 ~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~t-W~~~~~-~~~---~~~~ly~v~f~~~~~g~~  386 (398)
T PLN00033        326 RGFGILDVGYRSKKEAWAAGGSGILLRSTDGGKS-WKRDKG-ADN---IAANLYSVKFFDDKKGFV  386 (398)
T ss_pred             CCcceEEEEEcCCCcEEEEECCCcEEEeCCCCcc-eeEccc-cCC---CCcceeEEEEcCCCceEE
Confidence            1112445666668999999977666665444543 432210 111   122356677666677774

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=92.29  E-value=23  Score=39.84  Aligned_cols=247  Identities=11%  Similarity=0.064  Sum_probs=120.1

Q ss_pred             ccCCCccccccCCceeeeeEEe----eCCEEEEEe--CCcEEEEcC-CCCEEEEEeCCCC-CCcccCeEEecCCeEEEE-
Q 006913           24 FSSSAKVPYRRSAFRLSKPLIG----EDGKIYACS--EKTLFAFES-NGTIAWSLDLDFT-CNIGTAPVHGGTGEVYIV-   94 (626)
Q Consensus        24 ~~~~~~~~~~~~~~~~Sspvid----~dG~IwIgS--dggL~a~d~-~G~~~W~~~~~~~-~~i~~sp~iD~dG~IwVg-   94 (626)
                      |-++++.-++.+.+-++.-+-+    +||..++.+  ++.++.||- +|+..-.+.-... ..-+.++....|+.=++. 
T Consensus       174 ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~  253 (603)
T KOG0318|consen  174 FFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTV  253 (603)
T ss_pred             EeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEe
Confidence            3455555555555555554333    578888854  788999997 8887644431110 011222222233332222 


Q ss_pred             E-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccc
Q 006913           95 A-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLG  172 (626)
Q Consensus        95 T-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~  172 (626)
                      + +..+-..|..++..   ...|..+..    .....++++..  ++.|...+.++-|..+++. +......      .+
T Consensus       254 SaDkt~KIWdVs~~sl---v~t~~~~~~----v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i------~G  318 (603)
T KOG0318|consen  254 SADKTIKIWDVSTNSL---VSTWPMGST----VEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVI------SG  318 (603)
T ss_pred             cCCceEEEEEeeccce---EEEeecCCc----hhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhhee------cc
Confidence            2 44444445544321   012222211    11234444333  5566666667778888874 5543221      01


Q ss_pred             cccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEE
Q 006913          173 YRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVL  252 (626)
Q Consensus       173 ~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~  252 (626)
                            ++   ..+ .++.+-+.+..||-|+++|-|...+..+|.---.......+.+..+.....+.|+....+ ..+-
T Consensus       319 ------Hn---K~I-TaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~D-d~l~  387 (603)
T KOG0318|consen  319 ------HN---KSI-TALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWD-DTLR  387 (603)
T ss_pred             ------cc---cce-eEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecC-CeEE
Confidence                  11   122 334443225679999999988888887764322111111234556666655667766654 3444


Q ss_pred             EEECCCCcEEEE--EecCCCCCceeeEEEeeCCeEEEEEcCCeEEEEcC
Q 006913          253 ALDTSSGNILWH--KSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSP  299 (626)
Q Consensus       253 alD~~tG~~~w~--~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~  299 (626)
                      .++.+.+...-.  ..++   .....+++.++|.+-+-+...+|..+..
T Consensus       388 ~~~~~~~~~t~~~~~~lg---~QP~~lav~~d~~~avv~~~~~iv~l~~  433 (603)
T KOG0318|consen  388 VISLKDNGYTKSEVVKLG---SQPKGLAVLSDGGTAVVACISDIVLLQD  433 (603)
T ss_pred             EEecccCcccccceeecC---CCceeEEEcCCCCEEEEEecCcEEEEec
Confidence            444332222111  1222   1223455665654444444566766653

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=92.18  E-value=20  Score=39.00  Aligned_cols=134  Identities=12%  Similarity=0.059  Sum_probs=74.1

Q ss_pred             CCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCC
Q 006913          148 GRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSS  226 (626)
Q Consensus       148 ~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s  226 (626)
                      .+.|..+|.. .+.+..+..     +           ...+..+...+.+..+|+.+.+|.|..+|..++++.-....+.
T Consensus        15 ~~~v~viD~~t~~~~~~i~~-----~-----------~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~   78 (369)
T PF02239_consen   15 SGSVAVIDGATNKVVARIPT-----G-----------GAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG   78 (369)
T ss_dssp             GTEEEEEETTT-SEEEEEE------S-----------TTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS
T ss_pred             CCEEEEEECCCCeEEEEEcC-----C-----------CCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC
Confidence            4678888864 666555411     0           0111222333214569999989999999999998776554433


Q ss_pred             CCcceeeeeecCC-eEEEEEcCCCEEEEEECCCCcEEEEEecCCC-----CCceeeEEEeeCCeEEEEE--cCCeEEEEc
Q 006913          227 FDKAFTLTPGNNG-YLYVTIPVRALVLALDTSSGNILWHKSVGPL-----GSAEYAPVVDSNGWISVGS--LDGLLYSFS  298 (626)
Q Consensus       227 ~~~v~sI~~D~dG-~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l-----~~~~sspvvD~dG~IWVGT--~~gGLy~~d  298 (626)
                        ....++...|| .++++....+.+..+|.++.+.+........     ......++....+..||-+  ..+.++.+|
T Consensus        79 --~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd  156 (369)
T PF02239_consen   79 --NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD  156 (369)
T ss_dssp             --EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred             --CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence              23456677777 5777765567888999999888765543310     0113344444455556554  235666666


Q ss_pred             C
Q 006913          299 P  299 (626)
Q Consensus       299 ~  299 (626)
                      .
T Consensus       157 y  157 (369)
T PF02239_consen  157 Y  157 (369)
T ss_dssp             T
T ss_pred             e
Confidence            4

...

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=91.31  E-value=5.1  Score=40.79  Aligned_cols=44  Identities=18%  Similarity=0.236  Sum_probs=31.5

Q ss_pred             eEEEeeCCeEEEEEcCC-eEEEEcCC-CCEEEEeeccCCCCccccCceEEEEEE
Q 006913          276 APVVDSNGWISVGSLDG-LLYSFSPS-GVLNKFSKSDTSDSVIQSSPYWFHLLG  327 (626)
Q Consensus       276 spvvD~dG~IWVGT~~g-GLy~~d~~-g~~~~~~~~~~~~~~ilssp~V~~Il~  327 (626)
                      .+.+|.+|+|||+++++ .++.+|+. |+++.-..        ++.+.|.+++.
T Consensus       216 Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eik--------lPt~qitsccF  261 (310)
T KOG4499|consen  216 GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIK--------LPTPQITSCCF  261 (310)
T ss_pred             cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEE--------cCCCceEEEEe
Confidence            35678899999999875 68899985 87765443        45566655543

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=91.28  E-value=5.4  Score=44.37  Aligned_cols=131  Identities=13%  Similarity=0.052  Sum_probs=74.0

Q ss_pred             CCeE-EEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCC-eEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCc
Q 006913          196 EGSI-YISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNG-YLYVTIPVRALVLALDTSSGNILWHKSVGPLGSA  273 (626)
Q Consensus       196 dG~L-wIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG-~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~  273 (626)
                      +.+| +-...+|.|..+|..+. ....+-.+-.+...+|-+..|| +||-|..+ ..+-+.|..+|....+.....  .+
T Consensus       520 DakvcFsccsdGnI~vwDLhnq-~~VrqfqGhtDGascIdis~dGtklWTGGlD-ntvRcWDlregrqlqqhdF~S--QI  595 (705)
T KOG0639|consen  520 DAKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISKDGTKLWTGGLD-NTVRCWDLREGRQLQQHDFSS--QI  595 (705)
T ss_pred             ccceeeeeccCCcEEEEEcccc-eeeecccCCCCCceeEEecCCCceeecCCCc-cceeehhhhhhhhhhhhhhhh--hh
Confidence            3444 44455788999999873 3332221223445677777788 89999864 477788877776553332221  11


Q ss_pred             eeeEEEeeCCeEEEEEcCCeEEEEcCCCCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEEe
Q 006913          274 EYAPVVDSNGWISVGSLDGLLYSFSPSGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCL  338 (626)
Q Consensus       274 ~sspvvD~dG~IWVGT~~gGLy~~d~~g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~  338 (626)
                      ++--..-.++++-||..++.+..+...+..+....        +....|.++-...-|.-|+.|+
T Consensus       596 fSLg~cP~~dWlavGMens~vevlh~skp~kyqlh--------lheScVLSlKFa~cGkwfvStG  652 (705)
T KOG0639|consen  596 FSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLH--------LHESCVLSLKFAYCGKWFVSTG  652 (705)
T ss_pred             eecccCCCccceeeecccCcEEEEecCCccceeec--------ccccEEEEEEecccCceeeecC
Confidence            21111112568999999998888887654333211        1122233444455566665554

>PHA02713 hypothetical protein; Provisional

Probab=91.07  E-value=34  Score=39.41  Aligned_cols=90  Identities=9%  Similarity=0.112  Sum_probs=44.6

Q ss_pred             eEEEEeCCCCeEEEEEcCCC-CCcceeeeeecCCeEEEEEcCC------CEEEEEECCC-CcEEEEEecC-CCCCceeeE
Q 006913          207 ELYSLSAHSPYFNWIQDLSS-FDKAFTLTPGNNGYLYVTIPVR------ALVLALDTSS-GNILWHKSVG-PLGSAEYAP  277 (626)
Q Consensus       207 gL~~ld~~tg~~~w~~~~~s-~~~v~sI~~D~dG~LwVGT~~g------G~l~alD~~t-G~~~w~~~~~-~l~~~~ssp  277 (626)
                      .+.+||+.++  .|..-.+. ......-+...+|.|||.....      ..+.++|+.+ +  .|..-.+ +........
T Consensus       433 ~ve~YDP~td--~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~--~W~~~~~m~~~r~~~~~  508 (557)
T PHA02713        433 KVIRYDTVNN--IWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYN--GWELITTTESRLSALHT  508 (557)
T ss_pred             eEEEECCCCC--eEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCC--CeeEccccCccccccee
Confidence            3778998875  37632221 1111111223478999864211      1356889876 4  4764222 101111223


Q ss_pred             EEeeCCeEEEEE-cCC--eEEEEcCCC
Q 006913          278 VVDSNGWISVGS-LDG--LLYSFSPSG  301 (626)
Q Consensus       278 vvD~dG~IWVGT-~~g--GLy~~d~~g  301 (626)
                      ++- +|.||+-. +++  .+-+||+..
T Consensus       509 ~~~-~~~iyv~Gg~~~~~~~e~yd~~~  534 (557)
T PHA02713        509 ILH-DNTIMMLHCYESYMLQDTFNVYT  534 (557)
T ss_pred             EEE-CCEEEEEeeecceeehhhcCccc
Confidence            333 78888843 333  366676643

>PHA02713 hypothetical protein; Provisional

Probab=90.24  E-value=40  Score=38.85  Aligned_cols=183  Identities=9%  Similarity=0.074  Sum_probs=87.7

Q ss_pred             eCCEEEEEe--C------CcEEEEcCCCCEEEEEeCCCCCCcccCeEEecCCeEEEEE--C-----CeEEEEECCCCccc
Q 006913           46 EDGKIYACS--E------KTLFAFESNGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA--E-----NRVLKVDLLKIGTS  110 (626)
Q Consensus        46 ~dG~IwIgS--d------ggL~a~d~~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT--~-----ggL~~id~~~~~~~  110 (626)
                      -+|.||+..  +      +.+++||+... .|....+-.......-+..-+|.||+..  +     ..+.+||+.++   
T Consensus       302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n-~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~---  377 (557)
T PHA02713        302 VDNEIIIAGGYNFNNPSLNKVYKINIENK-IHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDD---  377 (557)
T ss_pred             ECCEEEEEcCCCCCCCccceEEEEECCCC-eEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCC---
Confidence            578898843  2      23788997322 4643221110111111223468898853  2     24788998875   


Q ss_pred             cceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEE-cC-----------------------CeEEEEeCCCcEEEEECC
Q 006913          111 ESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINV-KG-----------------------RALFAFMTHGQLLWSAGP  166 (626)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT-~~-----------------------gGL~a~d~~G~~~w~~~~  166 (626)
                          .|.....-.    ...........+|.||+-. .+                       ..+.+|||... .|..-+
T Consensus       378 ----~W~~~~~mp----~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td-~W~~v~  448 (557)
T PHA02713        378 ----KWKMLPDMP----IALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNN-IWETLP  448 (557)
T ss_pred             ----eEEECCCCC----cccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCC-eEeecC
Confidence                454322111    1111112234578888742 11                       23778888633 476411


Q ss_pred             cccccccccccccCCCCCccccceEEEcCCCeEEEE-cCC------CeEEEEeCCC-CeEEEEEcCC--CCCcceeeeee
Q 006913          167 VLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYIS-NTQ------GELYSLSAHS-PYFNWIQDLS--SFDKAFTLTPG  236 (626)
Q Consensus       167 ~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIG-T~~------GgL~~ld~~t-g~~~w~~~~~--s~~~v~sI~~D  236 (626)
                         ++..    +.      .....+.-  +|.||+- ..+      ..+.+||+++ ++  |..-.+  .......++ -
T Consensus       449 ---~m~~----~r------~~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~--W~~~~~m~~~r~~~~~~-~  510 (557)
T PHA02713        449 ---NFWT----GT------IRPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNG--WELITTTESRLSALHTI-L  510 (557)
T ss_pred             ---CCCc----cc------ccCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCC--eeEccccCcccccceeE-E
Confidence               1110    00      01122332  7889874 322      2367899987 43  764322  111111222 2


Q ss_pred             cCCeEEEEEcCCC--EEEEEECCCC
Q 006913          237 NNGYLYVTIPVRA--LVLALDTSSG  259 (626)
Q Consensus       237 ~dG~LwVGT~~gG--~l~alD~~tG  259 (626)
                      .+|.||+.....+  .+-++|+.++
T Consensus       511 ~~~~iyv~Gg~~~~~~~e~yd~~~~  535 (557)
T PHA02713        511 HDNTIMMLHCYESYMLQDTFNVYTY  535 (557)
T ss_pred             ECCEEEEEeeecceeehhhcCcccc
Confidence            3789998642222  3556776555

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=89.93  E-value=33  Score=37.35  Aligned_cols=32  Identities=19%  Similarity=0.148  Sum_probs=23.0

Q ss_pred             CCcccCeEEecCC-eEEEEE-CCeEEEEECCCCc
Q 006913           77 CNIGTAPVHGGTG-EVYIVA-ENRVLKVDLLKIG  108 (626)
Q Consensus        77 ~~i~~sp~iD~dG-~IwVgT-~ggL~~id~~~~~  108 (626)
                      |..--.+..+..| ++||+. .-||+.+++.++.
T Consensus       114 CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~  147 (376)
T KOG1520|consen  114 CGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGL  147 (376)
T ss_pred             cCCcceEEeccCCCeEEEEecceeeEEECCCCCc
Confidence            3333345556665 899996 7899999998874

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=89.79  E-value=12  Score=38.34  Aligned_cols=135  Identities=14%  Similarity=0.021  Sum_probs=77.6

Q ss_pred             CCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCcee
Q 006913          196 EGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEY  275 (626)
Q Consensus       196 dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~s  275 (626)
                      +..|.-+++++.|...|.++|.......+.+  .+.++-+..+|++...++ ++.+...|+++-..+-.+..+  .++. 
T Consensus       155 D~~iLSSadd~tVRLWD~rTgt~v~sL~~~s--~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k~P--~nV~-  228 (334)
T KOG0278|consen  155 DKCILSSADDKTVRLWDHRTGTEVQSLEFNS--PVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYKMP--CNVE-  228 (334)
T ss_pred             CceEEeeccCCceEEEEeccCcEEEEEecCC--CCcceeeccCCCEEEEec-CceeEEeccccccceeeccCc--cccc-
Confidence            5566666778889999999988765544332  244455567888877664 567766787666655544433  1222 


Q ss_pred             eEEEeeCCeEEE-EEcCCeEEEEcCC-CCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEEeeecCee
Q 006913          276 APVVDSNGWISV-GSLDGLLYSFSPS-GVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLMVVGQF  344 (626)
Q Consensus       276 spvvD~dG~IWV-GT~~gGLy~~d~~-g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~t~~Ggl  344 (626)
                      +....++-.+|| |..+..+|.||-. |..+-.+.    .+  ..+| |.++-...+|.+| .+++..|-+
T Consensus       229 SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n----kg--h~gp-VhcVrFSPdGE~y-AsGSEDGTi  291 (334)
T KOG0278|consen  229 SASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN----KG--HFGP-VHCVRFSPDGELY-ASGSEDGTI  291 (334)
T ss_pred             cccccCCCceEEecCcceEEEEEeccCCceeeecc----cC--CCCc-eEEEEECCCCcee-eccCCCceE
Confidence            222333445555 5567789999964 55433221    01  1222 3455556677776 455444444

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=89.45  E-value=33  Score=38.16  Aligned_cols=140  Identities=12%  Similarity=0.046  Sum_probs=73.0

Q ss_pred             CCeEEEEEcCCeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeE
Q 006913          139 SSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYF  218 (626)
Q Consensus       139 dG~LwIgT~~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~  218 (626)
                      ++-+.-|++++-+-.+|..-...|..     .+  .-       ++.+ .+.+.-+ .|.+.+...++.+-.+|.-+|..
T Consensus       166 ~hivvtGsYDg~vrl~DtR~~~~~v~-----el--nh-------g~pV-e~vl~lp-sgs~iasAgGn~vkVWDl~~G~q  229 (487)
T KOG0310|consen  166 DHIVVTGSYDGKVRLWDTRSLTSRVV-----EL--NH-------GCPV-ESVLALP-SGSLIASAGGNSVKVWDLTTGGQ  229 (487)
T ss_pred             CeEEEecCCCceEEEEEeccCCceeE-----Ee--cC-------CCce-eeEEEcC-CCCEEEEcCCCeEEEEEecCCce
Confidence            33455678887777788642213332     11  11       1222 2223333 55666655555677777774433


Q ss_pred             EEEEcCCCCCcceeeeeecCC-eEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEE-eeCCeEEEEEcCCeEEE
Q 006913          219 NWIQDLSSFDKAFTLTPGNNG-YLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVV-DSNGWISVGSLDGLLYS  296 (626)
Q Consensus       219 ~w~~~~~s~~~v~sI~~D~dG-~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvv-D~dG~IWVGT~~gGLy~  296 (626)
                      .-....+-+..+.|+....++ +|+-|.- ++.+-.+|..+-+.......+  +. +-++.+ +.+.++++|..+|.+..
T Consensus       230 ll~~~~~H~KtVTcL~l~s~~~rLlS~sL-D~~VKVfd~t~~Kvv~s~~~~--~p-vLsiavs~dd~t~viGmsnGlv~~  305 (487)
T KOG0310|consen  230 LLTSMFNHNKTVTCLRLASDSTRLLSGSL-DRHVKVFDTTNYKVVHSWKYP--GP-VLSIAVSPDDQTVVIGMSNGLVSI  305 (487)
T ss_pred             ehhhhhcccceEEEEEeecCCceEeeccc-ccceEEEEccceEEEEeeecc--cc-eeeEEecCCCceEEEecccceeee
Confidence            222111113356777666555 6777775 467777884444443322222  11 233444 34568999987776665


Q ss_pred             Ec
Q 006913          297 FS  298 (626)
Q Consensus       297 ~d  298 (626)
                      -.
T Consensus       306 rr  307 (487)
T KOG0310|consen  306 RR  307 (487)
T ss_pred             eh
Confidence            53

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=89.10  E-value=21  Score=38.27  Aligned_cols=137  Identities=19%  Similarity=0.274  Sum_probs=68.5

Q ss_pred             eEEEEcCC----CeEEEEe--CCCCeEEEEEcCCCCCcceeeeeecC-CeEEEEEcC---CCEEEEE--ECCCCcEEEEE
Q 006913          198 SIYISNTQ----GELYSLS--AHSPYFNWIQDLSSFDKAFTLTPGNN-GYLYVTIPV---RALVLAL--DTSSGNILWHK  265 (626)
Q Consensus       198 ~LwIGT~~----GgL~~ld--~~tg~~~w~~~~~s~~~v~sI~~D~d-G~LwVGT~~---gG~l~al--D~~tG~~~w~~  265 (626)
                      ++|||++.    +||+.+.  .+++++.............-++.+.+ +.||+....   .+.+.++  +..+|......
T Consensus         1 ~~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~   80 (345)
T PF10282_consen    1 TLYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN   80 (345)
T ss_dssp             EEEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred             CEEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence            47889886    6887664  47777765543221122233455544 479988752   4565554  44346554322


Q ss_pred             ecCCCCCceeeEEEeeCC-eEEEEEcC-CeEEEE--cCCCCEEEE---eecc--CCCCccccCceEEEEEEecCCcEE
Q 006913          266 SVGPLGSAEYAPVVDSNG-WISVGSLD-GLLYSF--SPSGVLNKF---SKSD--TSDSVIQSSPYWFHLLGPSIGLKA  334 (626)
Q Consensus       266 ~~~~l~~~~sspvvD~dG-~IWVGT~~-gGLy~~--d~~g~~~~~---~~~~--~~~~~ilssp~V~~Il~DsdG~Iw  334 (626)
                      .....+...+.+.+++++ .||++.+. +.+..+  +.+|.+...   ....  ..+......+...++..+.+|+..
T Consensus        81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v  158 (345)
T PF10282_consen   81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFV  158 (345)
T ss_dssp             EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEE
T ss_pred             eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEE
Confidence            111012234556676555 68888874 445444  444654332   1100  000001234555567777777643

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=88.95  E-value=39  Score=36.84  Aligned_cols=191  Identities=13%  Similarity=0.135  Sum_probs=92.6

Q ss_pred             CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCe-EEEEE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCee
Q 006913           55 EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGE-VYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIA  131 (626)
Q Consensus        55 dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~-IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I  131 (626)
                      ++.+..+|. +.+....+....  .....+....||+ +|+.. ++.|..+|..+.+..   -.+..+        ....
T Consensus        15 ~~~v~viD~~t~~~~~~i~~~~--~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v---~~i~~G--------~~~~   81 (369)
T PF02239_consen   15 SGSVAVIDGATNKVVARIPTGG--APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVV---ATIKVG--------GNPR   81 (369)
T ss_dssp             GTEEEEEETTT-SEEEEEE-ST--TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEE---EEEE-S--------SEEE
T ss_pred             CCEEEEEECCCCeEEEEEcCCC--CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEE---EEEecC--------CCcc
Confidence            467889997 677766665432  1222344456676 78877 789999999886420   011111        1233


Q ss_pred             EEEEEEcCCeEEEEEc-CCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcC--CCe
Q 006913          132 GIAVSTSSSSVYINVK-GRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT--QGE  207 (626)
Q Consensus       132 ~s~~~d~dG~LwIgT~-~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~--~Gg  207 (626)
                      +..+...+..++++.+ .+.+..+|.. .+.+.....  ...+      ...... -...++... .+..|+-+.  .+.
T Consensus        82 ~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~--~~~~------~~~~~~-Rv~aIv~s~-~~~~fVv~lkd~~~  151 (369)
T PF02239_consen   82 GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPT--GGMP------VDGPES-RVAAIVASP-GRPEFVVNLKDTGE  151 (369)
T ss_dssp             EEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE----EE-------TTTS----EEEEEE-S-SSSEEEEEETTTTE
T ss_pred             eEEEcCCCCEEEEEecCCCceeEeccccccceeeccc--cccc------ccccCC-CceeEEecC-CCCEEEEEEccCCe
Confidence            3333334445777654 4788899974 665544310  0000      000000 011122222 344454332  356


Q ss_pred             EEEEeCCCCeEEEEEcCCCCCcceeeeeecCCe-EEEEEcCCCEEEEEECCCCcEEEEEecC
Q 006913          208 LYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGY-LYVTIPVRALVLALDTSSGNILWHKSVG  268 (626)
Q Consensus       208 L~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~-LwVGT~~gG~l~alD~~tG~~~w~~~~~  268 (626)
                      +..+|....+..................|.+|+ ++++......+..+|.++++.......+
T Consensus       152 I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g  213 (369)
T PF02239_consen  152 IWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTG  213 (369)
T ss_dssp             EEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-S
T ss_pred             EEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeecc
Confidence            666765554332222211112234456777886 4555555567888899998887655443

...

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=88.73  E-value=1.7  Score=44.11  Aligned_cols=55  Identities=20%  Similarity=0.239  Sum_probs=40.5

Q ss_pred             eeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeC--CeEEEEE
Q 006913          233 LTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSN--GWISVGS  289 (626)
Q Consensus       233 I~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~d--G~IWVGT  289 (626)
                      +++|.+|+|||+++.++.++.+|+.||+++-...++.  ..+++.+....  +.+|+.+
T Consensus       217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt--~qitsccFgGkn~d~~yvT~  273 (310)
T KOG4499|consen  217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPT--PQITSCCFGGKNLDILYVTT  273 (310)
T ss_pred             ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCC--CceEEEEecCCCccEEEEEe
Confidence            5668899999999999999999999999987766552  12444555423  4566665

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=88.52  E-value=37  Score=36.08  Aligned_cols=268  Identities=13%  Similarity=0.096  Sum_probs=119.5

Q ss_pred             EEeeCCEEEE--EeCCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE--CCeEEEEECCCCccccceeEEE
Q 006913           43 LIGEDGKIYA--CSEKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA--ENRVLKVDLLKIGTSESATQVF  117 (626)
Q Consensus        43 vid~dG~IwI--gSdggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~  117 (626)
                      -....|.+.+  |++|.+..||. +-.+..  .+......+.+++..++|+..+.+  +..+...|...+..   -..+.
T Consensus        30 ~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar--~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~---l~rir  104 (405)
T KOG1273|consen   30 QFSRWGDYLAVGCANGRVVIYDFDTFRIAR--MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP---LKRIR  104 (405)
T ss_pred             EeccCcceeeeeccCCcEEEEEccccchhh--hhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc---eeEEE
Confidence            3445676665  34778888886 322211  011111235567777899988865  67777778766531   01122


Q ss_pred             ecCCCCCCCCCCeeEEEEEEcCCeEEEEEc-CCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcC
Q 006913          118 YGTGSGKGGTGAIAGIAVSTSSSSVYINVK-GRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQC  195 (626)
Q Consensus       118 ~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~-~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~  195 (626)
                      +.        ..+.+....+.+.+..+++. ...-+.++-. ++-...        +...  ...+.  ...+..+.|+.
T Consensus       105 f~--------spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~L--------p~d~--d~dln--~sas~~~fdr~  164 (405)
T KOG1273|consen  105 FD--------SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVL--------PKDD--DGDLN--SSASHGVFDRR  164 (405)
T ss_pred             cc--------CccceeeeccccCCeEEEEEecCCcEEEEecCCceeec--------cCCC--ccccc--cccccccccCC
Confidence            21        12333333444444444432 1112222211 211110        0000  00000  00112245654


Q ss_pred             CCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEE-EEEcCCCEEEEEECC-------CCcEEEEEec
Q 006913          196 EGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLY-VTIPVRALVLALDTS-------SGNILWHKSV  267 (626)
Q Consensus       196 dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~Lw-VGT~~gG~l~alD~~-------tG~~~w~~~~  267 (626)
                      +..|+.||..|-|..||.++-+........+...+-.|.....|+.. +.+. +..+-.++.+       .|++......
T Consensus       165 g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts-DRvIR~ye~~di~~~~r~~e~e~~~K~  243 (405)
T KOG1273|consen  165 GKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS-DRVIRTYEISDIDDEGRDGEVEPEHKL  243 (405)
T ss_pred             CCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC-CceEEEEehhhhcccCccCCcChhHHH
Confidence            67789999999999999998665432211111123334444455433 3332 2233223311       1111100000


Q ss_pred             CCC-CC-ceeeEEEeeCCeEEEEE--cCCeEEEEcCC-CCEEEEeeccCCCC-----ccccCceEEEEEEecCCcEEEEE
Q 006913          268 GPL-GS-AEYAPVVDSNGWISVGS--LDGLLYSFSPS-GVLNKFSKSDTSDS-----VIQSSPYWFHLLGPSIGLKAILC  337 (626)
Q Consensus       268 ~~l-~~-~~sspvvD~dG~IWVGT--~~gGLy~~d~~-g~~~~~~~~~~~~~-----~ilssp~V~~Il~DsdG~IwI~T  337 (626)
                      ... +. .......+.+|...+++  ....||.+..+ |.+.+......+..     +-...|.|.++   +.|.+|||+
T Consensus       244 qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si---~sg~v~iw~  320 (405)
T KOG1273|consen  244 QDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI---ASGVVYIWA  320 (405)
T ss_pred             HHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec---cCCceEEEE
Confidence            000 00 12345566566544443  23468888765 66555433211111     11123333233   789999998


Q ss_pred             ee
Q 006913          338 LM  339 (626)
Q Consensus       338 ~t  339 (626)
                      ..
T Consensus       321 ~~  322 (405)
T KOG1273|consen  321 VV  322 (405)
T ss_pred             ee
Confidence            64

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=88.16  E-value=38  Score=35.76  Aligned_cols=198  Identities=12%  Similarity=0.074  Sum_probs=99.4

Q ss_pred             cccCeEEecCCeEEEEE--CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEE-EEEcCCeEEEEEc--CCeEEE
Q 006913           79 IGTAPVHGGTGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIA-VSTSSSSVYINVK--GRALFA  153 (626)
Q Consensus        79 i~~sp~iD~dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~-~~d~dG~LwIgT~--~gGL~a  153 (626)
                      .+.++-.+.+|...+.+  +..|..||..+++.    ..-...+   +.  +  +..+ ....+..+..++.  +.-|-+
T Consensus        16 ~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~----~~ti~sk---ky--G--~~~~~Fth~~~~~i~sStk~d~tIry   84 (311)
T KOG1446|consen   16 KINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ----VKTINSK---KY--G--VDLACFTHHSNTVIHSSTKEDDTIRY   84 (311)
T ss_pred             ceeEEEecCCCCEEEEecCCCeEEEEEcCCCce----eeEeecc---cc--c--ccEEEEecCCceEEEccCCCCCceEE
Confidence            34455566778877764  56888888877642    1111111   00  0  1111 1223344444443  345666


Q ss_pred             EeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEE-EcCCCeEEEEeCCCCeEEEEEcCCCCCcce
Q 006913          154 FMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYI-SNTQGELYSLSAHSPYFNWIQDLSSFDKAF  231 (626)
Q Consensus       154 ~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwI-GT~~GgL~~ld~~tg~~~w~~~~~s~~~v~  231 (626)
                      ++.. .+.+-.+.      |.          .....++.+.+ .+..++ +..+..|..+|.+..+-+-.....   ..+
T Consensus        85 Lsl~dNkylRYF~------GH----------~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~---~~p  144 (311)
T KOG1446|consen   85 LSLHDNKYLRYFP------GH----------KKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS---GRP  144 (311)
T ss_pred             EEeecCceEEEcC------CC----------CceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecC---CCc
Confidence            6653 33332220      10          01122333333 234444 445667777777654332222211   123


Q ss_pred             eeeeecCCeEEEEEcCCCEEEEEECC--CCcEEEEEecC-CCCCceeeEEEeeCC-eEEEEEcCCeEEEEcC-CCCEEEE
Q 006913          232 TLTPGNNGYLYVTIPVRALVLALDTS--SGNILWHKSVG-PLGSAEYAPVVDSNG-WISVGSLDGLLYSFSP-SGVLNKF  306 (626)
Q Consensus       232 sI~~D~dG~LwVGT~~gG~l~alD~~--tG~~~w~~~~~-~l~~~~sspvvD~dG-~IWVGT~~gGLy~~d~-~g~~~~~  306 (626)
                      .++.|.+|.+++.......+-.+|.+  +..+...+.++ +....+..+-...|| .|.++|..+-++.+|. +|.++..
T Consensus       145 i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~t  224 (311)
T KOG1446|consen  145 IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKST  224 (311)
T ss_pred             ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeee
Confidence            45788899888776554466666643  22233333332 111123445555666 5888998888999997 6876553


Q ss_pred             e
Q 006913          307 S  307 (626)
Q Consensus       307 ~  307 (626)
                      .
T Consensus       225 f  225 (311)
T KOG1446|consen  225 F  225 (311)
T ss_pred             E
Confidence            3

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=87.40  E-value=0.22  Score=36.24  Aligned_cols=18  Identities=33%  Similarity=0.696  Sum_probs=12.2

Q ss_pred             HHHHhheeeEEEeecccc
Q 006913          408 LVLAVLVRFCCIFWRKKK  425 (626)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~  425 (626)
                      |+.++|.-|+|+||||+|
T Consensus        23 vI~~vl~~~l~~~~rR~k   40 (40)
T PF08693_consen   23 VIIIVLGAFLFFWYRRKK   40 (40)
T ss_pred             HHHHHHHHHhheEEeccC
Confidence            334556667888888876

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=86.73  E-value=41  Score=34.65  Aligned_cols=200  Identities=16%  Similarity=0.154  Sum_probs=96.4

Q ss_pred             ccCeEEec-CCeEEEEE--CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEc-CCeEEEEe
Q 006913           80 GTAPVHGG-TGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVK-GRALFAFM  155 (626)
Q Consensus        80 ~~sp~iD~-dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~-~gGL~a~d  155 (626)
                      .+.+..+. .+.||..+  .+.|+.++.++...    ..+.+..      . .-...+....++.+.+..+ .+.|+.++
T Consensus        24 ~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vl----r~i~l~g------~-~D~EgI~y~g~~~~vl~~Er~~~L~~~~   92 (248)
T PF06977_consen   24 LSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVL----RRIPLDG------F-GDYEGITYLGNGRYVLSEERDQRLYIFT   92 (248)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETT--EE----EEEE-SS--------SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred             ccccEEcCCCCeEEEEECCCCEEEEEcCCCCEE----EEEeCCC------C-CCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence            45666665 47799888  47899999865311    1122211      0 1223334445666666664 46677776


Q ss_pred             C--CCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCC--CeEEEEeC--CCCeEEEEEc--CC--
Q 006913          156 T--HGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQ--GELYSLSA--HSPYFNWIQD--LS--  225 (626)
Q Consensus       156 ~--~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~--GgL~~ld~--~tg~~~w~~~--~~--  225 (626)
                      .  .++.+-........++..  ...|   ..+ -.++.|..+++++++...  .+||.++.  ..........  ..  
T Consensus        93 ~~~~~~~~~~~~~~~~~l~~~--~~~N---~G~-EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~  166 (248)
T PF06977_consen   93 IDDDTTSLDRADVQKISLGFP--NKGN---KGF-EGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDD  166 (248)
T ss_dssp             E----TT--EEEEEEEE---S-----S---S---EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-H
T ss_pred             EeccccccchhhceEEecccc--cCCC---cce-EEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccc
Confidence            4  222111100000011100  0011   111 235677657889988653  35787765  2222222211  11  


Q ss_pred             --CCCcceeeeee-cCCeEEEEEcCCCEEEEEECCCCcEEEEEecCC----CCC---ceeeEEEeeCCeEEEEEcCCeEE
Q 006913          226 --SFDKAFTLTPG-NNGYLYVTIPVRALVLALDTSSGNILWHKSVGP----LGS---AEYAPVVDSNGWISVGSLDGLLY  295 (626)
Q Consensus       226 --s~~~v~sI~~D-~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~----l~~---~~sspvvD~dG~IWVGT~~gGLy  295 (626)
                        ....+.++..+ ..|+|||-+.....+..+| .+|+++-......    +..   ..-.++.|++|+|||.+..+-.|
T Consensus       167 ~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy  245 (248)
T PF06977_consen  167 KLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFY  245 (248)
T ss_dssp             T--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEE
T ss_pred             cceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEE
Confidence              11223445555 4679999988778899999 6788765544332    001   13357889999999999887777


Q ss_pred             EE
Q 006913          296 SF  297 (626)
Q Consensus       296 ~~  297 (626)
                      +|
T Consensus       246 ~f  247 (248)
T PF06977_consen  246 RF  247 (248)
T ss_dssp             EE
T ss_pred             Ee
Confidence            76

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=85.84  E-value=50  Score=34.72  Aligned_cols=223  Identities=12%  Similarity=0.105  Sum_probs=101.9

Q ss_pred             EEEEEe--CCcEEEEcC--CCCEE--EEEeCCCCCCcccCeEEecCCe-EEEEE--CCeEEEEECC-CCccccceeEEEe
Q 006913           49 KIYACS--EKTLFAFES--NGTIA--WSLDLDFTCNIGTAPVHGGTGE-VYIVA--ENRVLKVDLL-KIGTSESATQVFY  118 (626)
Q Consensus        49 ~IwIgS--dggL~a~d~--~G~~~--W~~~~~~~~~i~~sp~iD~dG~-IwVgT--~ggL~~id~~-~~~~~~~~~~~~~  118 (626)
                      .+|++.  ++++..++.  +|++.  -.....   .....+.++.+++ ||++.  +++|..++.+ ++..     ... 
T Consensus         3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~---~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l-----~~~-   73 (330)
T PRK11028          3 IVYIASPESQQIHVWNLNHEGALTLLQVVDVP---GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL-----TFA-   73 (330)
T ss_pred             EEEEEcCCCCCEEEEEECCCCceeeeeEEecC---CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce-----EEe-
Confidence            367775  567888875  35432  122221   1123445666665 78876  5788776654 2211     110 


Q ss_pred             cCCCCCCCCCCeeEEEEEEcCC-eEEEEEc-CCeEEEEeCC--CcEEEEECCcccccccccccccCCCCCccccceEEEc
Q 006913          119 GTGSGKGGTGAIAGIAVSTSSS-SVYINVK-GRALFAFMTH--GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQ  194 (626)
Q Consensus       119 ~~~~~~~~~~~~I~s~~~d~dG-~LwIgT~-~gGL~a~d~~--G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~  194 (626)
                      ....   ..+.. ..+..+.+| .||++.+ ++.|..++.+  |...-...    ...       .....   ....+++
T Consensus        74 ~~~~---~~~~p-~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~----~~~-------~~~~~---~~~~~~p  135 (330)
T PRK11028         74 AESP---LPGSP-THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQ----IIE-------GLEGC---HSANIDP  135 (330)
T ss_pred             eeec---CCCCc-eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCcee----ecc-------CCCcc---cEeEeCC
Confidence            0000   00111 223344444 5777765 3556777643  42210000    000       00000   1133454


Q ss_pred             CCCeEEEEcC-CCeEEEEeCCC-CeEEE----EEcCCCCCcceeeeeecCC-eEEEEEcCCCEEEEEECC--CCcEEEEE
Q 006913          195 CEGSIYISNT-QGELYSLSAHS-PYFNW----IQDLSSFDKAFTLTPGNNG-YLYVTIPVRALVLALDTS--SGNILWHK  265 (626)
Q Consensus       195 ~dG~LwIGT~-~GgL~~ld~~t-g~~~w----~~~~~s~~~v~sI~~D~dG-~LwVGT~~gG~l~alD~~--tG~~~w~~  265 (626)
                      .+..+|++.. .+.|..+|.++ +.+.-    ............+....|| .+|++....+.+..++..  ++......
T Consensus       136 ~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~  215 (330)
T PRK11028        136 DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQ  215 (330)
T ss_pred             CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEE
Confidence            2456787765 36688887765 32211    0111111123345555666 688887545666555543  45543222


Q ss_pred             ecC--C--C-C-CceeeEEEeeCC-eEEEEEc-CCeEEEEc
Q 006913          266 SVG--P--L-G-SAEYAPVVDSNG-WISVGSL-DGLLYSFS  298 (626)
Q Consensus       266 ~~~--~--l-~-~~~sspvvD~dG-~IWVGT~-~gGLy~~d  298 (626)
                      ...  +  . + .....+..+++| .+|++.. ++.|..|+
T Consensus       216 ~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~  256 (330)
T PRK11028        216 TLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFS  256 (330)
T ss_pred             EEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEE
Confidence            111  1  0 0 111234555665 5888754 34565555

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=85.69  E-value=52  Score=34.79  Aligned_cols=183  Identities=10%  Similarity=0.073  Sum_probs=96.5

Q ss_pred             cCeEEec-CCeEEEEE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC-
Q 006913           81 TAPVHGG-TGEVYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH-  157 (626)
Q Consensus        81 ~sp~iD~-dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~-  157 (626)
                      +++-.+. .+.|.+++ ++.|..|+.....     .+..+.      ...++..+... .+..+|.|+-++-|-.+|.+ 
T Consensus        17 S~v~f~~~~~~LLvssWDgslrlYdv~~~~-----l~~~~~------~~~plL~c~F~-d~~~~~~G~~dg~vr~~Dln~   84 (323)
T KOG1036|consen   17 SSVKFSPSSSDLLVSSWDGSLRLYDVPANS-----LKLKFK------HGAPLLDCAFA-DESTIVTGGLDGQVRRYDLNT   84 (323)
T ss_pred             eeEEEcCcCCcEEEEeccCcEEEEeccchh-----hhhhee------cCCceeeeecc-CCceEEEeccCceEEEEEecC
Confidence            3333333 34566666 8888888766532     111111      11223333333 36789999999999999976 


Q ss_pred             CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeec
Q 006913          158 GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGN  237 (626)
Q Consensus       158 G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~  237 (626)
                      |+.. ..+.            ++.   .+ ..+......|.|.-|.+++-|-.+|+++....-..+  ....++++-+ .
T Consensus        85 ~~~~-~igt------------h~~---~i-~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d--~~kkVy~~~v-~  144 (323)
T KOG1036|consen   85 GNED-QIGT------------HDE---GI-RCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD--QGKKVYCMDV-S  144 (323)
T ss_pred             Ccce-eecc------------CCC---ce-EEEEeeccCCeEEEcccCccEEEEeccccccccccc--cCceEEEEec-c
Confidence            4432 2211            111   11 122221126778889999999999998732222112  1235665543 3


Q ss_pred             CCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCC-eEEEEEcCCeEEE
Q 006913          238 NGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNG-WISVGSLDGLLYS  296 (626)
Q Consensus       238 dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG-~IWVGT~~gGLy~  296 (626)
                      +.+|.||+. +..+..+|..+-....+....++.-.+.++..-+++ -..+++-+|.+..
T Consensus       145 g~~LvVg~~-~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVav  203 (323)
T KOG1036|consen  145 GNRLVVGTS-DRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAV  203 (323)
T ss_pred             CCEEEEeec-CceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEE
Confidence            558888885 457777887665543332222221112333333333 3445666666654

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=85.63  E-value=51  Score=34.64  Aligned_cols=68  Identities=18%  Similarity=0.178  Sum_probs=46.5

Q ss_pred             eeEEeeCCEEEEEeCC--------------cEEEEcC-CCCEEEEEeCCCC----CCcccCeEEecC------CeEEEEE
Q 006913           41 KPLIGEDGKIYACSEK--------------TLFAFES-NGTIAWSLDLDFT----CNIGTAPVHGGT------GEVYIVA   95 (626)
Q Consensus        41 spvid~dG~IwIgSdg--------------gL~a~d~-~G~~~W~~~~~~~----~~i~~sp~iD~d------G~IwVgT   95 (626)
                      +..+|..|+||+-..|              .|++||. +++++..+.++..    ......+.+|..      +.+||+.
T Consensus         5 ~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD   84 (287)
T PF03022_consen    5 RVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITD   84 (287)
T ss_dssp             EEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEE
T ss_pred             EEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeC
Confidence            5678899999995311              5899998 8887766666432    134556777762      4689886


Q ss_pred             --CCeEEEEECCCCc
Q 006913           96 --ENRVLKVDLLKIG  108 (626)
Q Consensus        96 --~ggL~~id~~~~~  108 (626)
                        ..||.++|..+++
T Consensus        85 ~~~~glIV~dl~~~~   99 (287)
T PF03022_consen   85 SGGPGLIVYDLATGK   99 (287)
T ss_dssp             TTTCEEEEEETTTTE
T ss_pred             CCcCcEEEEEccCCc
Confidence              5799999998874

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=85.47  E-value=71  Score=36.16  Aligned_cols=101  Identities=15%  Similarity=0.102  Sum_probs=55.6

Q ss_pred             CCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCC-eEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCce
Q 006913          196 EGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNG-YLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAE  274 (626)
Q Consensus       196 dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG-~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~  274 (626)
                      ++.|..-+.+|-|..|++..+.+..... +-+..+.++.+..|| .||-|+. .|.+...+..+|.--...... -.+.+
T Consensus       290 kd~lItVSl~G~in~ln~~d~~~~~~i~-GHnK~ITaLtv~~d~~~i~Sgsy-DG~I~~W~~~~g~~~~~~g~~-h~nqI  366 (603)
T KOG0318|consen  290 KDHLITVSLSGTINYLNPSDPSVLKVIS-GHNKSITALTVSPDGKTIYSGSY-DGHINSWDSGSGTSDRLAGKG-HTNQI  366 (603)
T ss_pred             CCeEEEEEcCcEEEEecccCCChhheec-ccccceeEEEEcCCCCEEEeecc-CceEEEEecCCcccccccccc-ccceE
Confidence            4445444456777778777765322111 113345566665555 6888875 467777776555432111000 01234


Q ss_pred             eeEEEeeCCeEEEEEcCCeEEEEcC
Q 006913          275 YAPVVDSNGWISVGSLDGLLYSFSP  299 (626)
Q Consensus       275 sspvvD~dG~IWVGT~~gGLy~~d~  299 (626)
                      ..+.....+.++...++..|.+++.
T Consensus       367 ~~~~~~~~~~~~t~g~Dd~l~~~~~  391 (603)
T KOG0318|consen  367 KGMAASESGELFTIGWDDTLRVISL  391 (603)
T ss_pred             EEEeecCCCcEEEEecCCeEEEEec
Confidence            4556665577777777777777754

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=85.39  E-value=92  Score=37.43  Aligned_cols=152  Identities=16%  Similarity=0.104  Sum_probs=83.4

Q ss_pred             eEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEE-ecC
Q 006913          190 PVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHK-SVG  268 (626)
Q Consensus       190 pviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~-~~~  268 (626)
                      .+++..+..+-+|+.+-+|-+++........... +....+.++-.+.+|.+.+....+|.++++|..++...... .+.
T Consensus       102 ~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr-gh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~  180 (933)
T KOG1274|consen  102 LAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR-GHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVD  180 (933)
T ss_pred             EEEecCCcEEEeecCceeEEEEeccccchheeec-ccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCC
Confidence            3444313346667777778888776643322211 11224566777888887777666789999998888764322 111


Q ss_pred             C-----CCCceeeEEEeeC-CeEEEEEcCCeEEEEcCCCCEEEE-eeccCCCCccccCceEEEEEEecCCcEEEEEeeec
Q 006913          269 P-----LGSAEYAPVVDSN-GWISVGSLDGLLYSFSPSGVLNKF-SKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLMVV  341 (626)
Q Consensus       269 ~-----l~~~~sspvvD~d-G~IWVGT~~gGLy~~d~~g~~~~~-~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~t~~  341 (626)
                      +     .....+.+...++ |++.+...++-|..|++.+-...+ ..    +. ..++. +..+.-+..| .||++++..
T Consensus       181 k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr----~~-~~ss~-~~~~~wsPnG-~YiAAs~~~  253 (933)
T KOG1274|consen  181 KDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR----DK-LSSSK-FSDLQWSPNG-KYIAASTLD  253 (933)
T ss_pred             ccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeec----cc-ccccc-eEEEEEcCCC-cEEeeeccC
Confidence            1     0122334455555 777777778889999886532222 22    11 01222 2233344554 356666666


Q ss_pred             CeeEEecc
Q 006913          342 GQFSSLLS  349 (626)
Q Consensus       342 Ggl~~~~~  349 (626)
                      |++..+..
T Consensus       254 g~I~vWnv  261 (933)
T KOG1274|consen  254 GQILVWNV  261 (933)
T ss_pred             CcEEEEec
Confidence            66655543

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=84.46  E-value=82  Score=37.90  Aligned_cols=196  Identities=14%  Similarity=0.205  Sum_probs=106.9

Q ss_pred             cCCceeeeeEEee-CCEEEEEeCCc--EEEEcCCCCEEEEEeCCC----CCC---cccCeEEecCCeEEEEE---CCeEE
Q 006913           34 RSAFRLSKPLIGE-DGKIYACSEKT--LFAFESNGTIAWSLDLDF----TCN---IGTAPVHGGTGEVYIVA---ENRVL  100 (626)
Q Consensus        34 ~~~~~~Sspvid~-dG~IwIgSdgg--L~a~d~~G~~~W~~~~~~----~~~---i~~sp~iD~dG~IwVgT---~ggL~  100 (626)
                      ..+...+.++++. .++=||.-+++  ++.-+.++.+........    .+.   .-..++.+.+.+|.+-.   .+.||
T Consensus       428 ~~~~~n~~Lavg~k~DrSfVvRg~~igVFk~~~~~~l~f~t~i~~i~~~~g~~~~P~k~mL~~~d~~mil~~~~~~~~ly  507 (794)
T PF08553_consen  428 KDGEKNSSLAVGYKNDRSFVVRGSKIGVFKNTDDDGLEFSTAISNISTPKGKNFTPKKAMLHDQDRNMILLDPNNPNKLY  507 (794)
T ss_pred             cCCCccceeEeeeccCceEEECCCcEeEEECCCCCceeeeEEecccccCCCcccCcchhhhhccccceEeecCCCCCceE
Confidence            3466777788864 35566655443  444333343322211110    000   11123344555666654   47999


Q ss_pred             EEECCCCccccceeEEEecCCCCCCCCCCeeEEEEE-----EcCCeEEEEEcCCeEEEEeCC--C-cEEEEECCcccccc
Q 006913          101 KVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVS-----TSSSSVYINVKGRALFAFMTH--G-QLLWSAGPVLDQLG  172 (626)
Q Consensus       101 ~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~-----d~dG~LwIgT~~gGL~a~d~~--G-~~~w~~~~~~~~~~  172 (626)
                      .+|.+.++..   ..|.....      ..+....+.     ..+...++|...++|+++||.  | +++|...   .  .
T Consensus       508 ~mDLe~GKVV---~eW~~~~~------~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~---k--~  573 (794)
T PF08553_consen  508 KMDLERGKVV---EEWKVHDD------IPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS---K--Q  573 (794)
T ss_pred             EEecCCCcEE---EEeecCCC------cceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc---c--c
Confidence            9999998641   24543321      112222221     124578999888999999985  4 3455320   0  1


Q ss_pred             cccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCC-CCcceeeeeecCCeEEEEEcCCCEE
Q 006913          173 YRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSS-FDKAFTLTPGNNGYLYVTIPVRALV  251 (626)
Q Consensus       173 ~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s-~~~v~sI~~D~dG~LwVGT~~gG~l  251 (626)
                      |..       ..++ ++.+... +|.|-||+..|-|..||.-+ +. -...+++ ...+..+-+..||+-.+||.. -.+
T Consensus       574 Y~~-------~~~F-s~~aTt~-~G~iavgs~~G~IRLyd~~g-~~-AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyL  641 (794)
T PF08553_consen  574 YSS-------KNNF-SCFATTE-DGYIAVGSNKGDIRLYDRLG-KR-AKTALPGLGDPIIGIDVTADGKWILATCK-TYL  641 (794)
T ss_pred             ccc-------CCCc-eEEEecC-CceEEEEeCCCcEEeecccc-hh-hhhcCCCCCCCeeEEEecCCCcEEEEeec-ceE
Confidence            111       1123 4555664 99999999999888888543 21 1122233 234556667789998888875 355


Q ss_pred             EEEE
Q 006913          252 LALD  255 (626)
Q Consensus       252 ~alD  255 (626)
                      ..++
T Consensus       642 lLi~  645 (794)
T PF08553_consen  642 LLID  645 (794)
T ss_pred             EEEE
Confidence            5454

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=83.97  E-value=62  Score=34.24  Aligned_cols=232  Identities=12%  Similarity=0.090  Sum_probs=116.3

Q ss_pred             CceeeeeEEee-CCEEEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE-CCeEEEEECCCCcccc
Q 006913           36 AFRLSKPLIGE-DGKIYACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSE  111 (626)
Q Consensus        36 ~~~~Sspvid~-dG~IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~  111 (626)
                      ....|+.-... .+.|.+++ ++.|-.|+. ...++-.+....  ++...-+. ++..+|.|+ ++.|..+|.+++.   
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~--plL~c~F~-d~~~~~~G~~dg~vr~~Dln~~~---   86 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGA--PLLDCAFA-DESTIVTGGLDGQVRRYDLNTGN---   86 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCC--ceeeeecc-CCceEEEeccCceEEEEEecCCc---
Confidence            34455555543 46777777 787888876 223222222211  22222222 456899998 9999999998863   


Q ss_pred             ceeEEEecCCCCCCCCCCeeEEEEE-EcCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccce
Q 006913          112 SATQVFYGTGSGKGGTGAIAGIAVS-TSSSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVP  190 (626)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~I~s~~~-d~dG~LwIgT~~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~ssp  190 (626)
                         ....+.      ....+.++.. ...|.+.-|++++-+-.+|+..+..-.  .    +  ..       +.-+ .+ 
T Consensus        87 ---~~~igt------h~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~--~----~--d~-------~kkV-y~-  140 (323)
T KOG1036|consen   87 ---EDQIGT------HDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVG--T----F--DQ-------GKKV-YC-  140 (323)
T ss_pred             ---ceeecc------CCCceEEEEeeccCCeEEEcccCccEEEEecccccccc--c----c--cc-------CceE-EE-
Confidence               111111      1223444332 456778888888888888875422110  0    0  00       0111 12 


Q ss_pred             EEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCC-CcceeeeeecCCeEEEEEcCCCEEEE--EECC----CCcEEE
Q 006913          191 VIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSF-DKAFTLTPGNNGYLYVTIPVRALVLA--LDTS----SGNILW  263 (626)
Q Consensus       191 viD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~-~~v~sI~~D~dG~LwVGT~~gG~l~a--lD~~----tG~~~w  263 (626)
                       .|-.+++|.+|+.+-.+..||.++-..-......+. ..+.+++.-.++.=|+.+.-.|.+..  +|..    ..++..
T Consensus       141 -~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaF  219 (323)
T KOG1036|consen  141 -MDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAF  219 (323)
T ss_pred             -EeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeE
Confidence             222267899999888899999887543321111121 12344444334444444433344432  2221    111111


Q ss_pred             --EEecCCCCCc---eeeEEEee-CCeEEEEEcCCeEEEEcCC
Q 006913          264 --HKSVGPLGSA---EYAPVVDS-NGWISVGSLDGLLYSFSPS  300 (626)
Q Consensus       264 --~~~~~~l~~~---~sspvvD~-dG~IWVGT~~gGLy~~d~~  300 (626)
                        +.........   +.++.+.+ .|++.-|..+|-|.++|+.
T Consensus       220 kCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~  262 (323)
T KOG1036|consen  220 KCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLF  262 (323)
T ss_pred             EeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCc
Confidence              0111100011   22333332 3678888888888888874

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=83.27  E-value=83  Score=35.17  Aligned_cols=222  Identities=12%  Similarity=0.069  Sum_probs=110.1

Q ss_pred             ccCeEEecCCeEEEEE--CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEE-eC
Q 006913           80 GTAPVHGGTGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAF-MT  156 (626)
Q Consensus        80 ~~sp~iD~dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~-d~  156 (626)
                      .++..+-.||.|..+.  .|-|-.+|.++...    .....      ....++-..-....++++++...++++..+ |.
T Consensus        71 v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~i----LR~~~------ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~  140 (487)
T KOG0310|consen   71 VYSVDFRSDGRLLAAGDESGHVKVFDMKSRVI----LRQLY------AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDL  140 (487)
T ss_pred             eeEEEeecCCeEEEccCCcCcEEEeccccHHH----HHHHh------hccCceeEEEecccCCeEEEecCCCceEEEEEc
Confidence            4455556789988875  46677778544210    00000      011112222233456666655445555554 44


Q ss_pred             CCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCe-EEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeee
Q 006913          157 HGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGS-IYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTP  235 (626)
Q Consensus       157 ~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~-LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~  235 (626)
                      ++... .+     .+        ....+++.+.-+... ++. +.-|.|+|-|-.+|.+... .|....+-...+..+..
T Consensus       141 s~a~v-~~-----~l--------~~htDYVR~g~~~~~-~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~pVe~vl~  204 (487)
T KOG0310|consen  141 STAYV-QA-----EL--------SGHTDYVRCGDISPA-NDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHGCPVESVLA  204 (487)
T ss_pred             CCcEE-EE-----Ee--------cCCcceeEeeccccC-CCeEEEecCCCceEEEEEeccCC-ceeEEecCCCceeeEEE
Confidence            43332 21     00        001133322222332 444 5567888888888887743 45544332112334444


Q ss_pred             ecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeC-CeEEEEEcCCeEEEEcCC-CCEEEEeeccCCC
Q 006913          236 GNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSN-GWISVGSLDGLLYSFSPS-GVLNKFSKSDTSD  313 (626)
Q Consensus       236 D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~d-G~IWVGT~~gGLy~~d~~-g~~~~~~~~~~~~  313 (626)
                      -..|.+.+.. +|..+-..|..+|...-....+ ....++++....+ -.++-|+.++.+-.|+.+ -+.....      
T Consensus       205 lpsgs~iasA-gGn~vkVWDl~~G~qll~~~~~-H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~------  276 (487)
T KOG0310|consen  205 LPSGSLIASA-GGNSVKVWDLTTGGQLLTSMFN-HNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW------  276 (487)
T ss_pred             cCCCCEEEEc-CCCeEEEEEecCCceehhhhhc-ccceEEEEEeecCCceEeecccccceEEEEccceEEEEee------
Confidence            4566666543 4556666787766554321111 1123555666544 468888899999999843 2333221      


Q ss_pred             CccccCceEEEEEEecCCcEEEEE
Q 006913          314 SVIQSSPYWFHLLGPSIGLKAILC  337 (626)
Q Consensus       314 ~~ilssp~V~~Il~DsdG~IwI~T  337 (626)
                        -+++|.+..-+.+.+-.+++|-
T Consensus       277 --~~~~pvLsiavs~dd~t~viGm  298 (487)
T KOG0310|consen  277 --KYPGPVLSIAVSPDDQTVVIGM  298 (487)
T ss_pred             --ecccceeeEEecCCCceEEEec
Confidence              1345554333344455666554

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=83.02  E-value=70  Score=34.19  Aligned_cols=242  Identities=16%  Similarity=0.203  Sum_probs=111.4

Q ss_pred             eeEEee-CCEEEEEeC-----CcEEEEc--CC-CCEEE--EEeCCCCCCcccCeEEecCCe-EEEEE--CCeEEEEECCC
Q 006913           41 KPLIGE-DGKIYACSE-----KTLFAFE--SN-GTIAW--SLDLDFTCNIGTAPVHGGTGE-VYIVA--ENRVLKVDLLK  106 (626)
Q Consensus        41 spvid~-dG~IwIgSd-----ggL~a~d--~~-G~~~W--~~~~~~~~~i~~sp~iD~dG~-IwVgT--~ggL~~id~~~  106 (626)
                      -..++. ...||+..+     +++.+|.  .+ |++..  +.....  .....+.++.+++ ||++.  ++.|..++...
T Consensus        41 ~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g--~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~  118 (345)
T PF10282_consen   41 WLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGG--SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDD  118 (345)
T ss_dssp             CEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESS--SCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             eEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCC--CCcEEEEEecCCCEEEEEEccCCeEEEEEccC
Confidence            334443 456788753     3565555  33 65432  121111  1123355677766 56665  56777766554


Q ss_pred             -CccccceeEEEe-cCCCCC-CCCCCeeEEEEEEcCC-eEEEEEcC-CeEEEEeCC---CcEEEEECCcccccccccccc
Q 006913          107 -IGTSESATQVFY-GTGSGK-GGTGAIAGIAVSTSSS-SVYINVKG-RALFAFMTH---GQLLWSAGPVLDQLGYRQGCT  178 (626)
Q Consensus       107 -~~~~~~~~~~~~-~~~~~~-~~~~~~I~s~~~d~dG-~LwIgT~~-gGL~a~d~~---G~~~w~~~~~~~~~~~~~~~~  178 (626)
                       +.+......+.+ +..+.. .....-...+..+.+| .+|+...+ +.|+.|+.+   +++....     .+....   
T Consensus       119 ~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~-----~~~~~~---  190 (345)
T PF10282_consen  119 DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVD-----SIKVPP---  190 (345)
T ss_dssp             TSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEE-----EEECST---
T ss_pred             CcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEee-----cccccc---
Confidence             322111111111 011110 1112233445556565 57776543 557777643   3332211     000000   


Q ss_pred             cCCCCCccccceEEEcCCCeEEEEcC-CCeEEEEeCC--CCeEEEEEcCC----C---CCcceeeeeecCC-eEEEEEcC
Q 006913          179 KTDVDCYFTSVPVIDQCEGSIYISNT-QGELYSLSAH--SPYFNWIQDLS----S---FDKAFTLTPGNNG-YLYVTIPV  247 (626)
Q Consensus       179 ~~l~~~~i~sspviD~~dG~LwIGT~-~GgL~~ld~~--tg~~~w~~~~~----s---~~~v~sI~~D~dG-~LwVGT~~  247 (626)
                       .  ..  ...+++.+.+..+|+.+. .+.|..++.+  ++.+...+...    .   ......|....|| .|||....
T Consensus       191 -G--~G--PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~  265 (345)
T PF10282_consen  191 -G--SG--PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG  265 (345)
T ss_dssp             -T--SS--EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT
T ss_pred             -C--CC--CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc
Confidence             0  01  123455542456888754 4556666555  66665544321    1   1134457777778 68987744


Q ss_pred             CCEE--EEEECCCCcEEEEEecCCCCCceeeEEEeeCC-eEEEEEcC-CeEEEE
Q 006913          248 RALV--LALDTSSGNILWHKSVGPLGSAEYAPVVDSNG-WISVGSLD-GLLYSF  297 (626)
Q Consensus       248 gG~l--~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG-~IWVGT~~-gGLy~~  297 (626)
                      ...+  +.+|..+|.+.........+.....+.++++| .||++..+ +.|..|
T Consensus       266 ~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf  319 (345)
T PF10282_consen  266 SNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVF  319 (345)
T ss_dssp             TTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred             CCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEE
Confidence            4444  44555677765432221112334556776665 58888754 355554

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=82.08  E-value=75  Score=33.82  Aligned_cols=107  Identities=19%  Similarity=0.226  Sum_probs=61.1

Q ss_pred             cceEEEcCCCeEEEEcCCC-------eEEEEeCCCCeEEEEEcCC-----CCCcceeeeeecCCeEE-EEEcCCCEEEEE
Q 006913          188 SVPVIDQCEGSIYISNTQG-------ELYSLSAHSPYFNWIQDLS-----SFDKAFTLTPGNNGYLY-VTIPVRALVLAL  254 (626)
Q Consensus       188 sspviD~~dG~LwIGT~~G-------gL~~ld~~tg~~~w~~~~~-----s~~~v~sI~~D~dG~Lw-VGT~~gG~l~al  254 (626)
                      ..+.++. +|.+|+|....       -|..+-..+..+....-..     ...++.+|+.+.+|.++ +.++.++.+..+
T Consensus       166 RHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~  244 (305)
T PF07433_consen  166 RHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW  244 (305)
T ss_pred             eeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence            3456775 89999986421       2333333333333321111     13467788998888655 555667788888


Q ss_pred             ECCCCcEEEEEecCCCCCceeeEEEeeCCeEEEEEcCCeEEEEcCC
Q 006913          255 DTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPS  300 (626)
Q Consensus       255 D~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~  300 (626)
                      |..+|.++-.....    -.+.++...++ ..+.+..|.++..+..
T Consensus       245 d~~tg~~~~~~~l~----D~cGva~~~~~-f~~ssG~G~~~~~~~~  285 (305)
T PF07433_consen  245 DAATGRLLGSVPLP----DACGVAPTDDG-FLVSSGQGQLIRLSPD  285 (305)
T ss_pred             ECCCCCEeeccccC----ceeeeeecCCc-eEEeCCCccEEEccCc
Confidence            99999887544333    13444555445 4445545566666543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=81.36  E-value=92  Score=34.41  Aligned_cols=109  Identities=17%  Similarity=0.273  Sum_probs=53.5

Q ss_pred             eEEEcCCCeEEEEcC-CC--eEEEEeCCCCeEEEEEcCCCCCcceeeeeecCC-eEEEEEcCC--CEEEEEECCCCcEEE
Q 006913          190 PVIDQCEGSIYISNT-QG--ELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNG-YLYVTIPVR--ALVLALDTSSGNILW  263 (626)
Q Consensus       190 pviD~~dG~LwIGT~-~G--gL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG-~LwVGT~~g--G~l~alD~~tG~~~w  263 (626)
                      +...+.+..|++.+. .|  .||.+|.++++.......+..  ...+....|| .|++.+..+  ..++.+|..+|....
T Consensus       297 ~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~--~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~  374 (433)
T PRK04922        297 PTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNY--NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT  374 (433)
T ss_pred             eEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCC--ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEE
Confidence            444431334555443 22  489999887765433211111  1123334455 455444222  247778877776542


Q ss_pred             EEecCCCCCceeeEEEeeCCe-EEEEEcC---CeEEEEcCCCCEE
Q 006913          264 HKSVGPLGSAEYAPVVDSNGW-ISVGSLD---GLLYSFSPSGVLN  304 (626)
Q Consensus       264 ~~~~~~l~~~~sspvvD~dG~-IWVGT~~---gGLy~~d~~g~~~  304 (626)
                      .. .+.   ....|...+||. |++.+..   ..||.++.+|...
T Consensus       375 Lt-~~~---~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~  415 (433)
T PRK04922        375 LT-PGS---LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVR  415 (433)
T ss_pred             CC-CCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence            21 111   122355666665 4444432   3577777766543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=81.31  E-value=75  Score=33.34  Aligned_cols=237  Identities=13%  Similarity=0.149  Sum_probs=103.1

Q ss_pred             eeeEEeeCC-EEEEEe--CCcEEEEcC--CCCEEEEEeCCCCCCcccCeEEecCCe-EEEEE--CCeEEEEECCCCcccc
Q 006913           40 SKPLIGEDG-KIYACS--EKTLFAFES--NGTIAWSLDLDFTCNIGTAPVHGGTGE-VYIVA--ENRVLKVDLLKIGTSE  111 (626)
Q Consensus        40 Sspvid~dG-~IwIgS--dggL~a~d~--~G~~~W~~~~~~~~~i~~sp~iD~dG~-IwVgT--~ggL~~id~~~~~~~~  111 (626)
                      +...+..+| .||++.  +++++.|+.  +|.+.-....... .....+..+.+|+ +|++.  ++.|..++.+......
T Consensus        38 ~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~-~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~  116 (330)
T PRK11028         38 QPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLP-GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPV  116 (330)
T ss_pred             ccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCC-CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCC
Confidence            334555565 477875  467766654  4544211111110 1122455677776 66665  5778888765321100


Q ss_pred             ceeEEEecCCCCCCCCCCeeEEEEEEcC-CeEEEEEcC-CeEEEEeCC--CcEEEEECCcccccccccccccCCCCCccc
Q 006913          112 SATQVFYGTGSGKGGTGAIAGIAVSTSS-SSVYINVKG-RALFAFMTH--GQLLWSAGPVLDQLGYRQGCTKTDVDCYFT  187 (626)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~I~s~~~d~d-G~LwIgT~~-gGL~a~d~~--G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~  187 (626)
                      .... ...     .. ... ..+..+.+ ..+|+...+ +-|..++.+  |.+.-.. ......  ..       +.. .
T Consensus       117 ~~~~-~~~-----~~-~~~-~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~-~~~~~~--~~-------g~~-p  177 (330)
T PRK11028        117 APIQ-IIE-----GL-EGC-HSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE-PAEVTT--VE-------GAG-P  177 (330)
T ss_pred             Ccee-ecc-----CC-Ccc-cEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC-CCceec--CC-------CCC-C
Confidence            0000 000     00 011 12223444 467777654 557777753  4321100 000000  00       000 1


Q ss_pred             cceEEEcCCCeEEEEcC-CCeEEEEeCC--CCeEEEEEcCCC-------CCcceeeeeecCC-eEEEEEcCCCEEEEEEC
Q 006913          188 SVPVIDQCEGSIYISNT-QGELYSLSAH--SPYFNWIQDLSS-------FDKAFTLTPGNNG-YLYVTIPVRALVLALDT  256 (626)
Q Consensus       188 sspviD~~dG~LwIGT~-~GgL~~ld~~--tg~~~w~~~~~s-------~~~v~sI~~D~dG-~LwVGT~~gG~l~alD~  256 (626)
                      ..+.+.+.+..+|+.+. .+.|..++.+  ++++........       ......+....+| .||++....+.+..++.
T Consensus       178 ~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i  257 (330)
T PRK11028        178 RHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSV  257 (330)
T ss_pred             ceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEE
Confidence            22455542456888876 6777777765  445544333211       0111234455566 58887533345544443


Q ss_pred             --CCCcEEEEEecCCCCCceeeEEEeeCC-eEEEEEc-CCeEEEE
Q 006913          257 --SSGNILWHKSVGPLGSAEYAPVVDSNG-WISVGSL-DGLLYSF  297 (626)
Q Consensus       257 --~tG~~~w~~~~~~l~~~~sspvvD~dG-~IWVGT~-~gGLy~~  297 (626)
                        .++.......... +.....+..+++| .||++.. ++.|..|
T Consensus       258 ~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~  301 (330)
T PRK11028        258 SEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVY  301 (330)
T ss_pred             eCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEE
Confidence              2232222111110 1111234455455 6777665 3444444

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=81.28  E-value=1e+02  Score=34.84  Aligned_cols=188  Identities=12%  Similarity=0.069  Sum_probs=101.6

Q ss_pred             ccCeEEecCCeEEEEE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC-
Q 006913           80 GTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH-  157 (626)
Q Consensus        80 ~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~-  157 (626)
                      +.++..-.+|.+.-|. +|.++..++.+.++.    .-..      ...+ -|...+...+|+|.-|..+.-|...|.+ 
T Consensus       249 Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~----k~~~------aH~g-gv~~L~~lr~GtllSGgKDRki~~Wd~~y  317 (626)
T KOG2106|consen  249 VLCVTFLENGDVITGDSGGNILIWSKGTNRIS----KQVH------AHDG-GVFSLCMLRDGTLLSGGKDRKIILWDDNY  317 (626)
T ss_pred             EEEEEEcCCCCEEeecCCceEEEEeCCCceEE----eEee------ecCC-ceEEEEEecCccEeecCccceEEeccccc
Confidence            3345556788888776 677788888765431    1000      1112 3556667788888887777777777743 


Q ss_pred             CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeec
Q 006913          158 GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGN  237 (626)
Q Consensus       158 G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~  237 (626)
                      .++.-.      .++      ...  .. ...++..  .+.|+|||..+.|..=+.+++...-.+--  .+....++.-.
T Consensus       318 ~k~r~~------elP------e~~--G~-iRtv~e~--~~di~vGTtrN~iL~Gt~~~~f~~~v~gh--~delwgla~hp  378 (626)
T KOG2106|consen  318 RKLRET------ELP------EQF--GP-IRTVAEG--KGDILVGTTRNFILQGTLENGFTLTVQGH--GDELWGLATHP  378 (626)
T ss_pred             cccccc------cCc------hhc--CC-eeEEecC--CCcEEEeeccceEEEeeecCCceEEEEec--ccceeeEEcCC
Confidence            222111      011      000  11 1233333  45599999877666555555322211110  11222333333


Q ss_pred             CCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEEEEEcCCeEEEEcCCCC
Q 006913          238 NGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPSGV  302 (626)
Q Consensus       238 dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~g~  302 (626)
                      +..+++.....+.+...+  +.++.|...+..   ...+..+++.|.|-+||..|..+.+|.+.+
T Consensus       379 s~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d---~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~  438 (626)
T KOG2106|consen  379 SKNQLLTCGQDKHVRLWN--DHKLEWTKIIED---PAECADFHPSGVVAVGTATGRWFVLDTETQ  438 (626)
T ss_pred             ChhheeeccCcceEEEcc--CCceeEEEEecC---ceeEeeccCcceEEEeeccceEEEEecccc
Confidence            344554332223333333  567888876552   122345677789999999999999997654

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=81.19  E-value=52  Score=37.62  Aligned_cols=117  Identities=7%  Similarity=0.112  Sum_probs=61.1

Q ss_pred             CeEEEEE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC-CcEEEEE--
Q 006913           89 GEVYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH-GQLLWSA--  164 (626)
Q Consensus        89 G~IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~-G~~~w~~--  164 (626)
                      -.||++. ...||++|.+.+.|..|.          ....+.+....+....|-|-+||.++-+-++|+. ...+-..  
T Consensus       146 cDly~~gsg~evYRlNLEqGrfL~P~----------~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~  215 (703)
T KOG2321|consen  146 CDLYLVGSGSEVYRLNLEQGRFLNPF----------ETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDA  215 (703)
T ss_pred             ccEEEeecCcceEEEEcccccccccc----------ccccccceeeeecCccceEEecccCceEEEecchhhhhheeeec
Confidence            3477765 778999999888642221          0111222222233455667777877778888874 2222111  


Q ss_pred             CCcccccccccccccCCCCCccccceEEEcCCC-eEEEEcCCCeEEEEeCCCCeEEEEEc
Q 006913          165 GPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEG-SIYISNTQGELYSLSAHSPYFNWIQD  223 (626)
Q Consensus       165 ~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG-~LwIGT~~GgL~~ld~~tg~~~w~~~  223 (626)
                      ...++..+.    ...   ..-.+++.... +| .+=|||..|.++.||.++.+.....+
T Consensus       216 ~~~v~s~pg----~~~---~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~~kd  267 (703)
T KOG2321|consen  216 ASSVNSHPG----GDA---APSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLLVKD  267 (703)
T ss_pred             ccccCCCcc----ccc---cCcceEEEecC-CceeEEeeccCCcEEEEEcccCCceeecc
Confidence            000000000    000   00112333331 23 46789999999999999876655443

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=80.71  E-value=90  Score=33.84  Aligned_cols=135  Identities=10%  Similarity=0.044  Sum_probs=75.8

Q ss_pred             CCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCcee
Q 006913          196 EGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEY  275 (626)
Q Consensus       196 dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~s  275 (626)
                      +..|+-|+.++-|...|...|+..-.-. .....+.+++.-.+..+++... ...+-..+...|.+...  ...-..++.
T Consensus       289 dpqvit~S~D~tvrlWDl~agkt~~tlt-~hkksvral~lhP~e~~fASas-~dnik~w~~p~g~f~~n--lsgh~~iin  364 (460)
T KOG0285|consen  289 DPQVITGSHDSTVRLWDLRAGKTMITLT-HHKKSVRALCLHPKENLFASAS-PDNIKQWKLPEGEFLQN--LSGHNAIIN  364 (460)
T ss_pred             CCceEEecCCceEEEeeeccCceeEeee-cccceeeEEecCCchhhhhccC-CccceeccCCccchhhc--cccccceee
Confidence            6789999999988888888876543321 1122455555544455565432 23454555555655432  111122456


Q ss_pred             eEEEeeCCeEEEEEcCCeEEEEcCC-CCEEEEeeccCCCCccccCceEEEEEEecCCcEE
Q 006913          276 APVVDSNGWISVGSLDGLLYSFSPS-GVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKA  334 (626)
Q Consensus       276 spvvD~dG~IWVGT~~gGLy~~d~~-g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~Iw  334 (626)
                      ++...+||.+..|.++|.++.+|-. |-.....+.....+.+.+.--|++.+.|+.|.=.
T Consensus       365 tl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rl  424 (460)
T KOG0285|consen  365 TLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRL  424 (460)
T ss_pred             eeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceE
Confidence            6777778999999988888888743 4322222111111212333445666667666544

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=80.70  E-value=13  Score=41.64  Aligned_cols=115  Identities=11%  Similarity=0.132  Sum_probs=68.0

Q ss_pred             ccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCC-CCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEE
Q 006913          185 YFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSS-FDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILW  263 (626)
Q Consensus       185 ~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s-~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w  263 (626)
                      ++.++.+.- .+..|.+|.....|-.+|......+....+.+ ....++++...|-++.+.....|.+...|..+.....
T Consensus       467 yiRSckL~p-dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vr  545 (705)
T KOG0639|consen  467 YIRSCKLLP-DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVR  545 (705)
T ss_pred             ceeeeEecC-CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeee
Confidence            444433333 26678888776667777766644333322221 1122334444566677766566778778876666555


Q ss_pred             EEecCCCCCceeeEEEeeCC-eEEEEEcCCeEEEEcCC-CC
Q 006913          264 HKSVGPLGSAEYAPVVDSNG-WISVGSLDGLLYSFSPS-GV  302 (626)
Q Consensus       264 ~~~~~~l~~~~sspvvD~dG-~IWVGT~~gGLy~~d~~-g~  302 (626)
                      ++.--..  -.+++.+..+| +||.|..++.|-++|.. +.
T Consensus       546 qfqGhtD--GascIdis~dGtklWTGGlDntvRcWDlregr  584 (705)
T KOG0639|consen  546 QFQGHTD--GASCIDISKDGTKLWTGGLDNTVRCWDLREGR  584 (705)
T ss_pred             cccCCCC--CceeEEecCCCceeecCCCccceeehhhhhhh
Confidence            4432211  13556666566 69999999999999963 43

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=80.61  E-value=84  Score=34.28  Aligned_cols=105  Identities=16%  Similarity=0.200  Sum_probs=68.5

Q ss_pred             CCeEEEEcC-CCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCC-eEEEEEcC--CCEEEEEECCCCcEEEEEecCCCC
Q 006913          196 EGSIYISNT-QGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNG-YLYVTIPV--RALVLALDTSSGNILWHKSVGPLG  271 (626)
Q Consensus       196 dG~LwIGT~-~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG-~LwVGT~~--gG~l~alD~~tG~~~w~~~~~~l~  271 (626)
                      +..+|+.+. .+.+..+|.++..+......+.  ....++.+.+| .+||+...  ...+..+|..++...-....+.  
T Consensus        85 ~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~--  160 (381)
T COG3391          85 GNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN--  160 (381)
T ss_pred             CCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC--
Confidence            556888764 3578888866654443322222  23445666656 99999863  4788899988887765443331  


Q ss_pred             CceeeEEEeeCCe-EEEEE-cCCeEEEEcCCCCEEE
Q 006913          272 SAEYAPVVDSNGW-ISVGS-LDGLLYSFSPSGVLNK  305 (626)
Q Consensus       272 ~~~sspvvD~dG~-IWVGT-~~gGLy~~d~~g~~~~  305 (626)
                       .....+++++|. +|+.. .++.|..+|..+...+
T Consensus       161 -~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~  195 (381)
T COG3391         161 -TPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV  195 (381)
T ss_pred             -CcceEEECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence             124567788887 99887 4678889997765544

>PRK04792 tolB translocation protein TolB; Provisional

Probab=80.54  E-value=1e+02  Score=34.40  Aligned_cols=110  Identities=14%  Similarity=0.140  Sum_probs=52.9

Q ss_pred             eEEEcCCCeEEEEcC---CCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCC-eEEEEEcCCC--EEEEEECCCCcEEE
Q 006913          190 PVIDQCEGSIYISNT---QGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNG-YLYVTIPVRA--LVLALDTSSGNILW  263 (626)
Q Consensus       190 pviD~~dG~LwIGT~---~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG-~LwVGT~~gG--~l~alD~~tG~~~w  263 (626)
                      |...+++..|++...   ...||.+|.++++.......+...  .......|| .|++.+..++  .++.+|..+|....
T Consensus       311 p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~--~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~  388 (448)
T PRK04792        311 PSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQN--LGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV  388 (448)
T ss_pred             eEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCC--cCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE
Confidence            444331344555433   235899999887654332111111  112233455 4555443222  56778887776542


Q ss_pred             EEecCCCCCceeeEEEeeCCe-EEEEEcCC---eEEEEcCCCCEEE
Q 006913          264 HKSVGPLGSAEYAPVVDSNGW-ISVGSLDG---LLYSFSPSGVLNK  305 (626)
Q Consensus       264 ~~~~~~l~~~~sspvvD~dG~-IWVGT~~g---GLy~~d~~g~~~~  305 (626)
                      ... ..   ....|...+||. |++.+..+   .||.++.+|+...
T Consensus       389 lt~-~~---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~  430 (448)
T PRK04792        389 LTS-TR---LDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKA  430 (448)
T ss_pred             ccC-CC---CCCCceECCCCCEEEEEEecCCceEEEEEECCCCceE
Confidence            211 11   112345555553 44444333   2777777665443

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=80.26  E-value=1e+02  Score=34.29  Aligned_cols=146  Identities=16%  Similarity=0.160  Sum_probs=77.5

Q ss_pred             eeEEEEEEcCCeEEEE-EcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEE-EcCCC
Q 006913          130 IAGIAVSTSSSSVYIN-VKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYI-SNTQG  206 (626)
Q Consensus       130 ~I~s~~~d~dG~LwIg-T~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwI-GT~~G  206 (626)
                      .+...+..+.|...++ |..+.||+.... |.++...     .-.|.          .+ +.+..-. +|..+| |..+|
T Consensus        83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~-----~aHYQ----------~I-TcL~fs~-dgs~iiTgskDg  145 (476)
T KOG0646|consen   83 PVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL-----SAHYQ----------SI-TCLKFSD-DGSHIITGSKDG  145 (476)
T ss_pred             ceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH-----Hhhcc----------ce-eEEEEeC-CCcEEEecCCCc
Confidence            4555666677775555 477889999864 8764321     00111          11 2233322 555555 44455


Q ss_pred             eEEEEeCC------CC---e--EEEEEcCCCCCcceeeeee---cCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCC
Q 006913          207 ELYSLSAH------SP---Y--FNWIQDLSSFDKAFTLTPG---NNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGS  272 (626)
Q Consensus       207 gL~~ld~~------tg---~--~~w~~~~~s~~~v~sI~~D---~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~  272 (626)
                      .|..+..-      ..   +  ..|..+   .-.+..+..+   .+.+||-++.+ ..+-.+|...|..+-....+   .
T Consensus       146 ~V~vW~l~~lv~a~~~~~~~p~~~f~~H---tlsITDl~ig~Gg~~~rl~TaS~D-~t~k~wdlS~g~LLlti~fp---~  218 (476)
T KOG0646|consen  146 AVLVWLLTDLVSADNDHSVKPLHIFSDH---TLSITDLQIGSGGTNARLYTASED-RTIKLWDLSLGVLLLTITFP---S  218 (476)
T ss_pred             cEEEEEEEeecccccCCCccceeeeccC---cceeEEEEecCCCccceEEEecCC-ceEEEEEeccceeeEEEecC---C
Confidence            55544321      10   0  001100   0123334443   34577777643 46666777778766544333   1


Q ss_pred             ceeeEEEeeC-CeEEEEEcCCeEEEEcC
Q 006913          273 AEYAPVVDSN-GWISVGSLDGLLYSFSP  299 (626)
Q Consensus       273 ~~sspvvD~d-G~IWVGT~~gGLy~~d~  299 (626)
                      .+.++++|+- -.+|+|+.+|.++.++-
T Consensus       219 si~av~lDpae~~~yiGt~~G~I~~~~~  246 (476)
T KOG0646|consen  219 SIKAVALDPAERVVYIGTEEGKIFQNLL  246 (476)
T ss_pred             cceeEEEcccccEEEecCCcceEEeeeh
Confidence            2455677744 57999999999888873

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	626
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	2e-18
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	3e-15
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	1e-12
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	2e-07
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	4e-05
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	1e-16
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	5e-13
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	4e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	7e-11
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	6e-05
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	3e-06
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	1e-04
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	2e-04

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Length = 330

 Score = 86.3 bits (214), Expect = 2e-18
 Identities = 59/309 (19%), Positives = 111/309 (35%), Gaps = 59/309 (19%)

Query: 40  SKPLIGEDGKIY-ACSEKTLFAFESNGTIAWSLDLDFTCNIGTAP-------VHGGTGEV 91
           S P++ ++G IY   S K L+A  ++G++ W         I   P       ++ G+ +V
Sbjct: 23  SSPILAKNGTIYLGSSNKNLYAINTDGSVKWFFKSGE--IIECRPSIGKDGTIYFGSDKV 80

Query: 92  YIVAEN-RVL-KVDLLKIGTSESAT----QVFYGTGSGK--------------GGTGAIA 131
           Y +  +     + D  K   S   T     ++  +  G                   AI 
Sbjct: 81  YAINPDGTEKWRFDTKKAIVS-DFTIFEDILYVTSMDGHLYAINTDGTEKWRFKTKKAIY 139

Query: 132 GIAVSTSSSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPV 191
              + +   ++Y+      L+A    G   W                +   +   TS   
Sbjct: 140 ATPIVSEDGTIYVGSNDNYLYAINPDGTEKW----------------RFKTNDAITSAAS 183

Query: 192 IDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALV 251
           I + +G+IY  +   ++Y+++       W      +          +G +YVT  +   +
Sbjct: 184 IGK-DGTIYFGS--DKVYAINPDG-TEKWNFYAGYWTVT-RPAISEDGTIYVT-SLDGHL 237

Query: 252 LALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPSGVLNKFSKSDT 311
            A++   G   W    G     E +PV+ +   I  GS DG LY+ +P G       +  
Sbjct: 238 YAINP-DGTEKWRFKTG--KRIESSPVIGNTDTIYFGSYDGHLYAINPDG---TEKWNFE 291

Query: 312 SDSVIQSSP 320
           + S I ++P
Sbjct: 292 TGSWIIATP 300

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Length = 330

 Score = 76.2 bits (188), Expect = 3e-15
 Identities = 46/266 (17%), Positives = 87/266 (32%), Gaps = 46/266 (17%)

Query: 39  LSKPLIGEDGKIYA-CSEKTLFAFESNGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVAEN 97
           +S   I  +  +Y    +  L+A  ++GT  W         I   P+    G +Y+ + +
Sbjct: 100 VSDFTIF-EDILYVTSMDGHLYAINTDGTEKWRFKTKK--AIYATPIVSEDGTIYVGSND 156

Query: 98  RVLKVDLLKIGTSESATQVF-YGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMT 156
             L         +   T+ + + T        +I           +Y       ++A   
Sbjct: 157 NYLYAI------NPDGTEKWRFKTNDAITSAASIGKDGT------IY--FGSDKVYAINP 202

Query: 157 HGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSP 216
            G   W                      +  + P I + +G+IY+++  G LY+++    
Sbjct: 203 DGTEKW----------------NFYAGYWTVTRPAISE-DGTIYVTSLDGHLYAINP-DG 244

Query: 217 YFNWIQDLSSFDKAFTLTP--GNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAE 274
              W             +P  GN   +Y        + A++   G   W+   G      
Sbjct: 245 TEKWRFKTGK---RIESSPVIGNTDTIYFGS-YDGHLYAINPD-GTEKWNFETG--SWII 297

Query: 275 YAPVVDSNGWISVGSLDGLLYSFSPS 300
             PV+D NG I  G+ +G  Y+    
Sbjct: 298 ATPVIDENGTIYFGTRNGKFYALFNL 323

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Length = 330

 Score = 68.2 bits (167), Expect = 1e-12
 Identities = 45/236 (19%), Positives = 76/236 (32%), Gaps = 40/236 (16%)

Query: 32  YRRSAFRLSKPLIGEDGKIYACSE-KTLFAFESNGTIAWSLDLDFTCNIGTAPVHGGTGE 90
           ++      + P++ EDG IY  S    L+A   +GT  W    +    I +A   G  G 
Sbjct: 132 FKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPDGTEKWRFKTNDA--ITSAASIGKDGT 189

Query: 91  VYIVAENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRA 150
           +Y    ++V  ++       +   +  +  G       AI+         ++Y+      
Sbjct: 190 IY-FGSDKVYAINP------DGTEKWNFYAGYWTVTRPAIS------EDGTIYVTSLDGH 236

Query: 151 LFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYS 210
           L+A    G   W                +        S PVI     +IY  +  G LY+
Sbjct: 237 LYAINPDGTEKW----------------RFKTGKRIESSPVIG-NTDTIYFGSYDGHLYA 279

Query: 211 LSAHSPYFNWIQDLSSFDKAFTLTP--GNNGYLYVTIPVRALVLALDTSSGNILWH 264
           ++       W  +  S       TP    NG +Y          AL     +   H
Sbjct: 280 INP-DGTEKWNFETGS---WIIATPVIDENGTIYFGTRNGKFY-ALFNLEHHHHHH 330

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Length = 330

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 38/189 (20%), Positives = 69/189 (36%), Gaps = 42/189 (22%)

Query: 118 YGTGSGKGGTGAIAG---IAVSTSSSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYR 174
           +  G+    +  +A    I + +S+ ++Y         A  T G + W            
Sbjct: 15  FLIGNSIDSSPILAKNGTIYLGSSNKNLY---------AINTDGSVKW------------ 53

Query: 175 QGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLT 234
                          P I + +G+IY  +   ++Y+++       W  D      A    
Sbjct: 54  ----FFKSGEIIECRPSIGK-DGTIYFGS--DKVYAINP-DGTEKWRFDTKK---AIVSD 102

Query: 235 PG-NNGYLYVTIPVRALVLALDTSSGNILW-HKSVGPLGSAEYAPVVDSNGWISVGSLDG 292
                  LYVT  +   + A++ + G   W  K+   + +    P+V  +G I VGS D 
Sbjct: 103 FTIFEDILYVT-SMDGHLYAIN-TDGTEKWRFKTKKAIYA---TPIVSEDGTIYVGSNDN 157

Query: 293 LLYSFSPSG 301
            LY+ +P G
Sbjct: 158 YLYAINPDG 166

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Length = 330

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 251 VLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPSG 301
           +L    +   I W   +G   S + +P++  NG I +GS +  LY+ +  G
Sbjct: 1   MLRGGVNDCKIKWEFLIG--NSIDSSPILAKNGTIYLGSSNKNLYAINTDG 49

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A Length = 376

 Score = 81.4 bits (201), Expect = 1e-16
 Identities = 61/294 (20%), Positives = 103/294 (35%), Gaps = 43/294 (14%)

Query: 38  RLSKPLIGEDGKIYACSEK-TLFAFE-SNGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA 95
            LS  +    G +Y  SEK  ++A   S+GT+AW   +       + PV    G V I  
Sbjct: 94  LLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGE--ALSRPVVSD-GLVLIHT 150

Query: 96  E-NRVLKVDLLKIGT------SESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKG 148
              ++  ++    G        +  +    G  +        A  A      +      G
Sbjct: 151 SNGQLQALNE-ADGAVKWTVNLDMPSLSLRGESAP-----TTAFGAAVVGGDN------G 198

Query: 149 RALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGEL 208
           R     M  GQ++W       ++    G T+ D      + PV+    G ++     G L
Sbjct: 199 RVSAVLMEQGQMIWQ-----QRISQATGSTEIDRLSDVDTTPVVV--NGVVFALAYNGNL 251

Query: 209 YSLSAHSPYFNWIQDLSSFDKAFTLTP-GNNGYLYVTIPVRALVLALDTSSGNILWHKSV 267
            +L   S    W ++L S +         +   +Y+       V+AL    G  LW    
Sbjct: 252 TALDLRSGQIMWKRELGSVN-----DFIVDGNRIYLVDQ-NDRVMALTIDGGVTLW-TQS 304

Query: 268 GPLGSAEYAPVVDSNGWISVGSLDGLLYSFSP-SGVLNKFSKSDTSDSVIQSSP 320
             L     +PV+  NG + VG  +G L+  +   G     ++     S  Q+ P
Sbjct: 305 DLLHRLLTSPVL-YNGNLVVGDSEGYLHWINVEDGRFV--AQQKVDSSGFQTEP 355

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A Length = 376

 Score = 69.8 bits (171), Expect = 5e-13
 Identities = 50/272 (18%), Positives = 97/272 (35%), Gaps = 44/272 (16%)

Query: 39  LSKPLIGEDGKIYA-CSEKTLFAFE-SNGTIAWSLDLD---FTCNIGTAPVHGGTGEVYI 93
           LS+P++  DG +    S   L A   ++G + W+++LD    +    +AP     G   +
Sbjct: 136 LSRPVVS-DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAF-GAAVV 193

Query: 94  VAEN-RVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSS-----SSVYINVK 147
             +N RV  V +      E    ++    S   G+  I  ++   ++       V+    
Sbjct: 194 GGDNGRVSAVLM------EQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAY 247

Query: 148 GRALFAF-MTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQG 206
              L A  +  GQ++W       +LG                  ++D     IY+ +   
Sbjct: 248 NGNLTALDLRSGQIMWKR-----ELGSVND-------------FIVD--GNRIYLVDQND 287

Query: 207 ELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKS 266
            + +L+       W Q         +     NG L V       +  ++   G  +  + 
Sbjct: 288 RVMALTIDGGVTLWTQSDLLHRLLTSPVL-YNGNLVVG-DSEGYLHWINVEDGRFVAQQK 345

Query: 267 VGPLGSAEYAPVVDSNGWISVGSLDGLLYSFS 298
           V    S      V ++G + + + DG +YS +
Sbjct: 346 VD--SSGFQTEPVAADGKLLIQAKDGTVYSIT 375

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A Length = 376

 Score = 61.0 bits (148), Expect = 4e-10
 Identities = 34/151 (22%), Positives = 61/151 (40%), Gaps = 25/151 (16%)

Query: 158 GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPY 217
               WS       +G   G      + Y    P +   +  +Y ++  G + +L+A    
Sbjct: 28  PTTAWST-----SVGSGIG------NFYSNLHPALA--DNVVYAADRAGLVKALNADDGK 74

Query: 218 FNWIQDLSSFDKAFTLTPG--------NNGYLYVTIPVRALVLALDTSSGNILWHKSVGP 269
             W   L+  D  F+  P         + G++Y+    +A V AL+TS G + W   V  
Sbjct: 75  EIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIG-SEKAQVYALNTSDGTVAWQTKVA- 132

Query: 270 LGSAEYAPVVDSNGWISVGSLDGLLYSFSPS 300
            G A   PVV  +G + + + +G L + + +
Sbjct: 133 -GEALSRPVVS-DGLVLIHTSNGQLQALNEA 161

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 67.2 bits (163), Expect = 1e-11
 Identities = 82/603 (13%), Positives = 154/603 (25%), Gaps = 227/603 (37%)

Query: 167 VLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGE----LYSLSAHSPYFNWIQ 222
           V D    +   +K ++D    S   +       +   ++ E     +        + ++ 
Sbjct: 38  VQDMP--KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95

Query: 223 D----------------LSSFDKAFT----LTPGNNGYLYVTI--PVRALVLAL--DTSS 258
                            +   D+ +         N     V+   P   L  AL     +
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN-----VSRLQPYLKLRQALLELRPA 150

Query: 259 GNILWH------KSVGPLGSAEYAPVVDSNG----WISVGS----------LDGLLYSFS 298
            N+L        K+   L       V         W+++ +          L  LLY   
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210

Query: 299 PSGVLNKFSKSDTSDSV--------------IQSSPYWFHLL------GPSIGLKA--IL 336
           P    N  S+SD S ++              ++S PY   LL             A  + 
Sbjct: 211 P----NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA-WNAFNLS 265

Query: 337 C-LMVVGQFSSL---LSKSDLQHFVLDESLVLAFLTASNQKLVASCSQTRP-KLPS-IYT 390
           C +++  +F  +   LS +   H  LD    +       + L+      RP  LP  + T
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDH-HSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324

Query: 391 GNERAILLF----------------------------------------LF-----FESV 405
            N R + +                                         +F     F   
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384

Query: 406 VLLVLAVLVRFCCIFWRK----------KKLQGQHLGNFLEKRR--------SLQLKKKA 447
             +   +L     + W             KL    L   +EK+         S+ L+ K 
Sbjct: 385 AHIPTILL----SLIWFDVIKSDVMVVVNKLHKYSL---VEKQPKESTISIPSIYLELKV 437

Query: 448 FDRSITELEKKVAEDAVANEVIKKSVVCLGRDEAAASSESKSFPPVYDAKSRSYSFQ--G 505
              +   L + +                +       + +S    P Y      Y +   G
Sbjct: 438 KLENEYALHRSI----------------VDHYNIPKTFDSDDLIPPYL---DQYFYSHIG 478

Query: 506 AKKESVTIFHTLSATSSAESSSERET-----SWVSEDKDQSTAKAKAKAKAKAPIKAESS 560
                    H L      E  +          ++           + K +  +     S 
Sbjct: 479 --------HH-LKNIEHPERMTLFRMVFLDFRFL-----------EQKIRHDSTAWNASG 518

Query: 561 SDGDGIMD-KEYRR--SPSEPASSSRGFINPLL-----------------LKQEKLQDKG 600
           S  + +   K Y+     ++P       +N +L                 L +  L  + 
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYERL--VNAILDFLPKIEENLICSKYTDLLRIALMAED 576

Query: 601 EVV 603
           E +
Sbjct: 577 EAI 579

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Length = 369

 Score = 63.1 bits (153), Expect = 7e-11
 Identities = 37/302 (12%), Positives = 85/302 (28%), Gaps = 50/302 (16%)

Query: 40  SKPLIGEDGKIY-ACSEKTLFAFE-SNGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVAEN 97
           S   +  +  ++ +  + +L A     G+I W+L  D    +   P H           +
Sbjct: 3   STVTLP-ETLLFVSTLDGSLHAVSKRTGSIKWTLKED---PVLQVPTHVEEPAFLPDPND 58

Query: 98  RVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAF-MT 156
             L    L    +E  T++ +        +   +   +      +Y+  K    +   + 
Sbjct: 59  GSLYT--LGSKNNEGLTKLPFTIPELVQASPCRSSDGI------LYMGKKQDIWYVIDLL 110

Query: 157 HGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQC--EGSIYISNTQGELYSLSAH 214
            G+   +                       +S            +Y+  T+  +      
Sbjct: 111 TGEKQQT----------------------LSSAFADSLSPSTSLLYLGRTEYTITMYDTK 148

Query: 215 SPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAE 274
           +    W      +  +      +    +       LV+ +D+ SG++LW ++        
Sbjct: 149 TRELRWNATYFDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYA------ 202

Query: 275 YAPVVDSNGWISVGSLDGLLYSFSPSGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKA 334
            +PVV       V   +GL      +  +            +     W +        K+
Sbjct: 203 -SPVVA----FYVWQREGLRKVMHINVAVETLRYLTFMSGEVGRITKWKYPFPKETEAKS 257

Query: 335 IL 336
            L
Sbjct: 258 KL 259

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Length = 369

 Score = 44.6 bits (105), Expect = 6e-05
 Identities = 40/312 (12%), Positives = 74/312 (23%), Gaps = 75/312 (24%)

Query: 29  KVPYRRSAFRLSKPLIGEDGKIYACSEK-TLFAFE-SNGTIAWSLDLDFTCNIGTAPVHG 86
           K+P+       + P    DG +Y   ++   +  +   G    +L   F      +P   
Sbjct: 74  KLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA--DSLSPS-- 129

Query: 87  GTGEVYIVAENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINV 146
            T  +Y+      +                                    T +       
Sbjct: 130 -TSLLYLGRTEYTI--------------------------------TMYDTKT------- 149

Query: 147 KGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVID-QCEGSIYISNTQ 205
                       +L W+                     Y  S+P  D   + S ++SN  
Sbjct: 150 -----------RELRWN----------------ATYFDYAASLPEDDVDYKMSHFVSNGD 182

Query: 206 GELYSLSAHSPYFNWIQDLSSF-DKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWH 264
           G + ++ + S    WIQ+ +S     +         +         +  L   SG +   
Sbjct: 183 GLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLRKVMHINVAVETLRYLTFMSGEVGRI 242

Query: 265 KSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPSGVLNKFSKSDTSDSVIQSSPYWFH 324
                    E          + VG     LY+               S   +   P    
Sbjct: 243 TKWKYPFPKETEAKSKLTPTLYVGKYSTSLYASPSMVHEGVAVVPRGSTLPLLEGPQTDG 302

Query: 325 LLGPSIGLKAIL 336
           +     G   I 
Sbjct: 303 VTIGDKGESVIT 314

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 32/219 (14%), Positives = 59/219 (26%), Gaps = 31/219 (14%)

Query: 89  GEVYIV--AENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYI-- 144
           G  ++   A ++V K+D                 GS +        +AV  S+ +V++  
Sbjct: 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSD 161

Query: 145 NVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYIS-- 202
                 +  F   G+ +   G        R G               +      + ++  
Sbjct: 162 GYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSL------ALVPHLDQLCVADR 215

Query: 203 --------NTQGELYSLSAHSPYF--NWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVL 252
                    T  + +        F  N           F      NG  Y          
Sbjct: 216 ENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFA----VNGKPYFGDQEPVQGF 271

Query: 253 ALDTSSGNILWHKSVGPLGSAEYAP---VVDSNGWISVG 288
            ++ SSG I+      P+      P   V   +G + +G
Sbjct: 272 VMNFSSGEII--DVFKPVRKHFDMPHDIVASEDGTVYIG 308

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} Length = 339

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 39/233 (16%), Positives = 67/233 (28%), Gaps = 31/233 (13%)

Query: 47  DGKIYACSEKTLFAFESNGTIAWSLDLDFTCNI--GTAPVHGGTGEVYIVAENRVLKVDL 104
           +G ++A   +        G I WS++ +    +     P    T E  I+       +  
Sbjct: 19  EGGLHAVDRRN-------GHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYY 71

Query: 105 LKIGTSE-----SATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAF-MTHG 158
                       S  Q+   +         +           VY       ++   M +G
Sbjct: 72  FNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNG 131

Query: 159 QLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSP-- 216
           +++ + GP               VDC       + +CE  I I  T    + L  HS   
Sbjct: 132 EIISAFGP----GSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTI---FELGIHSYDG 184

Query: 217 ------YFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILW 263
                 Y  W Q++     A   T   +G        +  +LA D       W
Sbjct: 185 ASYNVTYSTWQQNVLDVPLALQNTFSKDGMCIAPFRDK-SLLASDLDFRIARW 236

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} Length = 339

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 6/75 (8%)

Query: 253 ALDTSSGNILWHKSVGPLG----SAEYAPVVDSNGWISVGSLDGLLYSFSPSGVLNKFSK 308
           A+D  +G+I+W              E + +      I     DG +Y F+    L K   
Sbjct: 24  AVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPL 83

Query: 309 SDTSDSVIQSSPYWF 323
             +   ++ +SP   
Sbjct: 84  --SIRQLVSTSPLHL 96

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	626
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.93
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.92
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.92
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.92
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.91
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.9
3ott_A	758	Two-component system sensor histidine kinase; beta	99.87
3ott_A	758	Two-component system sensor histidine kinase; beta	99.85
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.85
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.84
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.72
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.72
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.58
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.57
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.56
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.55
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.54
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	99.54
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.54
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.53
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.52
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	99.52
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.51
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.49
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.42
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.41
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.38
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.32
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.3
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.27
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.27
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.27
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.25
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.24
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.23
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.23
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.21
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.21
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.2
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.2
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.2
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.19
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.19
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.14
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.09
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.06
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.06
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.05
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.04
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.04
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.02
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.99
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	98.92
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.83
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.73
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	98.72
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	98.6
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.59
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	98.54
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.48
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	98.47
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.45
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.42
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.39
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.26
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.24
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.21
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	98.2
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	98.18
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.18
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.17
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.15
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.1
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.1
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.08
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.07
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.06
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.06
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.04
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.01
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.0
2qe8_A	343	Uncharacterized protein; structural genomics, join	97.99
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.98
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.98
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.94
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.92
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.91
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	97.9
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	97.89
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.86
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.85
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.84
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.84
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.83
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.83
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	97.8
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.8
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.79
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.73
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.73
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	97.72
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	97.72
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.72
3ow8_A	321	WD repeat-containing protein 61; structural genomi	97.71
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.71
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.67
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	97.67
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.67
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.64
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.63
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	97.62
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.62
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	97.61
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	97.59
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.58
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.55
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.55
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	97.54
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	97.53
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.53
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.51
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.5
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.49
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	97.45
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	97.45
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.43
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.43
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	97.42
3ow8_A	321	WD repeat-containing protein 61; structural genomi	97.42
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	97.41
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.38
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	97.37
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	97.35
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	97.34
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	97.34
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.34
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.33
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.33
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	97.31
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.25
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	97.21
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.21
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	97.18
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	97.18
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	97.15
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	97.13
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	97.13
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	97.12
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.1
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	97.07
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.06
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.06
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.06
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.04
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	97.04
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	97.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	96.99
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	96.94
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	96.93
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.93
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	96.92
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	96.92
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	96.89
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	96.88
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	96.85
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.81
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	96.8
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	96.78
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	96.73
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	96.72
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	96.7
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	96.63
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	96.62
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	96.58
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.56
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	96.53
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	96.53
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	96.53
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	96.51
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	96.49
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.47
3jrp_A	379	Fusion protein of protein transport protein SEC13	96.44
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	96.44
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	96.43
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.41
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.38
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	96.38
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	96.31
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	96.31
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.29
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.26
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	96.17
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	96.14
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	96.09
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	96.06
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	96.04
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	96.03
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	96.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	95.83
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	95.8
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	95.77
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	95.75
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	95.65
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	95.64
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	95.59
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	95.59
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	95.43
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	95.17
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	95.15
3jrp_A	379	Fusion protein of protein transport protein SEC13	95.13
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	95.08
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	94.91
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	94.9
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	94.79
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.59
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	94.55
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	94.49
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	94.27
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	94.27
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	94.19
3hx6_A	570	Type 4 fimbrial biogenesis protein PILY1; beta pro	94.17
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	94.16
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	94.14
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	94.01
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	94.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	93.96
3jro_A	753	Fusion protein of protein transport protein SEC13	93.75
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	93.48
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	93.44
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	93.19
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.17
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	92.97
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	92.81
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	92.69
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	92.46
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	92.25
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	92.24
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	92.21
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	92.16
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	91.89
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	91.49
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	91.39
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	91.37
3jro_A	753	Fusion protein of protein transport protein SEC13	91.32
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	91.07
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	90.52
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	90.52
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	90.21
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	90.04
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	88.63
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	88.38
3elq_A	571	Arylsulfate sulfotransferase; beta propeller, prot	88.33
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	88.22
3elq_A	571	Arylsulfate sulfotransferase; beta propeller, prot	88.17
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	87.32
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	87.17
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	86.92
1k32_A	1045	Tricorn protease; protein degradation, substrate g	86.78
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	86.19
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	85.57
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	83.03
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	81.95
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	81.89
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	81.48
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	81.41
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	80.63

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.93  E-value=6.7e-25  Score=225.76  Aligned_cols=295  Identities=20%  Similarity=0.314  Sum_probs=205.3

Q ss_pred             CCceeeeeEEeeCCEEEEEe-CCcEEEEcCCCCEEEEEeCCCCCCcccCeEEecCCeEEEEECCeEEEEECCCCccccce
Q 006913           35 SAFRLSKPLIGEDGKIYACS-EKTLFAFESNGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVAENRVLKVDLLKIGTSESA  113 (626)
Q Consensus        35 ~~~~~Sspvid~dG~IwIgS-dggL~a~d~~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT~ggL~~id~~~~~~~~~~  113 (626)
                      ...+.++|++|.+|.||+++ +++|+++|.+|+..|.+..+.  ....+++++.+|.||+++.+ |+++|+. +..    
T Consensus        18 ~~~~~~~~~~d~~g~l~v~t~~~~l~~~d~~g~~~~~~~~~~--~~~~~~~~~~~g~l~v~t~~-l~~~d~~-g~~----   89 (330)
T 3hxj_A           18 GNSIDSSPILAKNGTIYLGSSNKNLYAINTDGSVKWFFKSGE--IIECRPSIGKDGTIYFGSDK-VYAINPD-GTE----   89 (330)
T ss_dssp             CEEECCCCEECTTSCEECSSTTTTTEEECTTSCEEESSCGGG--EEEECCEETTTTEECCSSCE-EEEECCC-GGG----
T ss_pred             CCCcccCceEccCCeEEEEcCCCEEEEECCCCcEEEEEecCC--CcccceEEecCCcEEEecCc-EEEECCC-CcE----
Confidence            44678899999999999998 678999998899999765432  34568888889999999976 9999874 332    


Q ss_pred             eEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccceEEE
Q 006913          114 TQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVID  193 (626)
Q Consensus       114 ~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD  193 (626)
                       .|.+...      ......+... ++.||+++.+++|+++|++|+..|....     +           .....+++++
T Consensus        90 -~~~~~~~------~~~~~~~~~~-~~~l~v~t~~~~l~~~d~~g~~~~~~~~-----~-----------~~~~~~~~~~  145 (330)
T 3hxj_A           90 -KWRFDTK------KAIVSDFTIF-EDILYVTSMDGHLYAINTDGTEKWRFKT-----K-----------KAIYATPIVS  145 (330)
T ss_dssp             -GGGSCC-----------CCEEEE-TTEEEEECTTSEEEEECTTSCEEEEEEC-----S-----------SCCCSCCEEC
T ss_pred             -EEEEECC------CCcccCceEE-CCEEEEEecCCEEEEEcCCCCEEEEEcC-----C-----------CceeeeeEEc
Confidence             1211110      1111222223 8999999988999999988989997511     0           1123567888


Q ss_pred             cCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCc
Q 006913          194 QCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSA  273 (626)
Q Consensus       194 ~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~  273 (626)
                      . +|.||+|+.+++|+++|++ ++..|...... ..+.+++.|.+|+||+++   +.++++| .+|+..|......  ..
T Consensus       146 ~-~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~-~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~--~~  216 (330)
T 3hxj_A          146 E-DGTIYVGSNDNYLYAINPD-GTEKWRFKTND-AITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGY--WT  216 (330)
T ss_dssp             T-TSCEEEECTTSEEEEECTT-SCEEEEEECSS-CCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSS--CC
T ss_pred             C-CCEEEEEcCCCEEEEECCC-CCEeEEEecCC-CceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCC--cc
Confidence            5 8999999988999999999 78889876432 234567788899999998   5788899 7899999876542  23


Q ss_pred             eeeEEEeeCCeEEEEEcCCeEEEEcCCCCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEEeeecCeeEEecccCC-
Q 006913          274 EYAPVVDSNGWISVGSLDGLLYSFSPSGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLMVVGQFSSLLSKSD-  352 (626)
Q Consensus       274 ~sspvvD~dG~IWVGT~~gGLy~~d~~g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~t~~Ggl~~~~~~~d-  352 (626)
                      ..+++++.+|.||+||.+++|++++++++..|.....  .. ...+     ++.+.+|+||+++.  .|++..+...+. 
T Consensus       217 ~~~~~~~~~g~l~v~t~~~gl~~~~~~g~~~~~~~~~--~~-~~~~-----~~~~~~g~l~v~t~--~ggl~~~d~~g~~  286 (330)
T 3hxj_A          217 VTRPAISEDGTIYVTSLDGHLYAINPDGTEKWRFKTG--KR-IESS-----PVIGNTDTIYFGSY--DGHLYAINPDGTE  286 (330)
T ss_dssp             CSCCEECTTSCEEEEETTTEEEEECTTSCEEEEEECS--SC-CCSC-----CEECTTSCEEEECT--TCEEEEECTTSCE
T ss_pred             eeceEECCCCeEEEEcCCCeEEEECCCCCEeEEeeCC--CC-cccc-----ceEcCCCeEEEecC--CCCEEEECCCCcE
Confidence            5668889889999999999999999888888865521  11 1222     44578999987653  467766544333 


Q ss_pred             cceeeecCceeeeeec-cccceeeeeecc
Q 006913          353 LQHFVLDESLVLAFLT-ASNQKLVASCSQ  380 (626)
Q Consensus       353 ~~~f~~d~gli~~~~~-a~~~~~~~~~~~  380 (626)
                      ...+......+..++. ..+...+++-.+
T Consensus       287 ~~~~~~~~~~~~~~~~d~~g~l~~gt~~G  315 (330)
T 3hxj_A          287 KWNFETGSWIIATPVIDENGTIYFGTRNG  315 (330)
T ss_dssp             EEEEECSSCCCSCCEECTTCCEEEECTTS
T ss_pred             EEEEEcCCccccceEEcCCCEEEEEcCCC
Confidence            3334433333333333 445555554443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.92  E-value=5.7e-23  Score=239.34  Aligned_cols=301  Identities=12%  Similarity=0.116  Sum_probs=203.5

Q ss_pred             ceeeeeEEeeCCEEEEEeC-CcEEEEcC-CCCEEEEEe-------CC---C--CCCcccCeEEecCCeEEEEE-CCeEEE
Q 006913           37 FRLSKPLIGEDGKIYACSE-KTLFAFES-NGTIAWSLD-------LD---F--TCNIGTAPVHGGTGEVYIVA-ENRVLK  101 (626)
Q Consensus        37 ~~~Sspvid~dG~IwIgSd-ggL~a~d~-~G~~~W~~~-------~~---~--~~~i~~sp~iD~dG~IwVgT-~ggL~~  101 (626)
                      ....+.++|.+|.||+|+. +||++++. ++.+.....       ..   .  ....+.++++|.+|+||+|| ++||++
T Consensus       258 ~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~  337 (781)
T 3v9f_A          258 SYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINF  337 (781)
T ss_dssp             CCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEE
T ss_pred             ceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEE
Confidence            3455677888999999996 89999998 555432111       11   0  01345678899999999999 899999


Q ss_pred             EECCCCccccceeEEEecC--CCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccc
Q 006913          102 VDLLKIGTSESATQVFYGT--GSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCT  178 (626)
Q Consensus       102 id~~~~~~~~~~~~~~~~~--~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~  178 (626)
                      +++.+..+    ..+....  ..........|..++.+.+|+||+||.++||+++++. +...+.. .           .
T Consensus       338 ~~~~~~~~----~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~-~-----------~  401 (781)
T 3v9f_A          338 ISNAPPTF----HTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNK-E-----------N  401 (781)
T ss_dssp             ECSSCCSC----EEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC---------------
T ss_pred             eCCCCCcc----eeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEcc-C-----------C
Confidence            99887542    1111110  0012223456788888999999999998999999986 3332110 0           0


Q ss_pred             cCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCC-CCCcceeeeeecCCeEEEEEcCCCEEEEEECC
Q 006913          179 KTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLS-SFDKAFTLTPGNNGYLYVTIPVRALVLALDTS  257 (626)
Q Consensus       179 ~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~-s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~  257 (626)
                      ..+.... ..+++.|. +|+||+|+..+||++++++++++..+.... ....+.++++|.+|+||||+.  ++++.+|+.
T Consensus       402 ~~~~~~~-v~~i~~d~-~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~  477 (781)
T 3v9f_A          402 RELLSNS-VLCSLKDS-EGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH--AGVFVIDLA  477 (781)
T ss_dssp             --CCCSB-EEEEEECT-TSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET--TEEEEEESS
T ss_pred             CCCCCcc-eEEEEECC-CCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC--CceEEEeCC
Confidence            0111112 35567785 899999999889999999988776553211 234578899999999999995  578899988


Q ss_pred             CCcEEEEEecC--C-CCCceeeEEEeeCCeEEEEEcCCeEEEEcCCCCEEEEeeccCCCCccccCceEEEEEEecCCcEE
Q 006913          258 SGNILWHKSVG--P-LGSAEYAPVVDSNGWISVGSLDGLLYSFSPSGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKA  334 (626)
Q Consensus       258 tG~~~w~~~~~--~-l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~Iw  334 (626)
                      ++++.......  . ....+.++.+|++|+||+||.++||+++++.+........  ...  ++.+.|.+|++|.+|+||
T Consensus       478 ~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~--~~~--l~~~~i~~i~~d~~g~lW  553 (781)
T 3v9f_A          478 SKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKFNQ--YEG--FCSNTINQIYRSSKGQMW  553 (781)
T ss_dssp             SSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEECT--TTT--CSCSCEEEEEECTTSCEE
T ss_pred             CCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEccC--CCC--CCCCeeEEEEECCCCCEE
Confidence            88765443222  1 1234567889999999999988899999987543333221  223  567889999999999999


Q ss_pred             EEEeeecCee-EEec-ccCCcceeeecCceee
Q 006913          335 ILCLMVVGQF-SSLL-SKSDLQHFVLDESLVL  364 (626)
Q Consensus       335 I~T~t~~Ggl-~~~~-~~~d~~~f~~d~gli~  364 (626)
                      ++|.   +|+ ..+. ....+.+|...+|++.
T Consensus       554 i~T~---~Glv~~~d~~~~~~~~~~~~~gl~~  582 (781)
T 3v9f_A          554 LATG---EGLVCFPSARNFDYQVFQRKEGLPN  582 (781)
T ss_dssp             EEET---TEEEEESCTTTCCCEEECGGGTCSC
T ss_pred             EEEC---CCceEEECCCCCcEEEccccCCCCC
Confidence            8875   344 5543 3445888887777643

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.92  E-value=4.8e-24  Score=219.35  Aligned_cols=261  Identities=22%  Similarity=0.329  Sum_probs=191.9

Q ss_pred             CceeeeeEEeeCCEEEEEeCCcEEEEcCCCCEEEEEeCCCCCCcccCeEEecCCeEEEEE-CCeEEEEECCCCcccccee
Q 006913           36 AFRLSKPLIGEDGKIYACSEKTLFAFESNGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSESAT  114 (626)
Q Consensus        36 ~~~~Sspvid~dG~IwIgSdggL~a~d~~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~  114 (626)
                      ....++|+++.+|.||+++.+ |+++|.+|+..|.+....  .....+.++ +|+||+++ +++|+++|+. +.     .
T Consensus        59 ~~~~~~~~~~~~g~l~v~t~~-l~~~d~~g~~~~~~~~~~--~~~~~~~~~-~~~l~v~t~~~~l~~~d~~-g~-----~  128 (330)
T 3hxj_A           59 EIIECRPSIGKDGTIYFGSDK-VYAINPDGTEKWRFDTKK--AIVSDFTIF-EDILYVTSMDGHLYAINTD-GT-----E  128 (330)
T ss_dssp             GEEEECCEETTTTEECCSSCE-EEEECCCGGGGGGSCC-------CCEEEE-TTEEEEECTTSEEEEECTT-SC-----E
T ss_pred             CCcccceEEecCCcEEEecCc-EEEECCCCcEEEEEECCC--CcccCceEE-CCEEEEEecCCEEEEEcCC-CC-----E
Confidence            456688999889999999977 999998888777655432  234456665 89999999 7899999988 43     3


Q ss_pred             EEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccceEEEc
Q 006913          115 QVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQ  194 (626)
Q Consensus       115 ~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~  194 (626)
                      .|.+...      ...+..+..+.+|+||+++.+++|+++|++|+..|.+..     .           .....++++|.
T Consensus       129 ~~~~~~~------~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~g~~~~~~~~-----~-----------~~~~~~~~~d~  186 (330)
T 3hxj_A          129 KWRFKTK------KAIYATPIVSEDGTIYVGSNDNYLYAINPDGTEKWRFKT-----N-----------DAITSAASIGK  186 (330)
T ss_dssp             EEEEECS------SCCCSCCEECTTSCEEEECTTSEEEEECTTSCEEEEEEC-----S-----------SCCCSCCEECT
T ss_pred             EEEEcCC------CceeeeeEEcCCCEEEEEcCCCEEEEECCCCCEeEEEec-----C-----------CCceeeeEEcC
Confidence            4544321      123344566779999999988999999988989897511     0           11235678885


Q ss_pred             CCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCce
Q 006913          195 CEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAE  274 (626)
Q Consensus       195 ~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~  274 (626)
                       +|.||+++  ++|+++| .+++..|...... ..+.+++.+.+|+||+++. ++.++++| .+|...|.+....  ...
T Consensus       187 -~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~-~~~~~~~~~~~g~l~v~t~-~~gl~~~~-~~g~~~~~~~~~~--~~~  257 (330)
T 3hxj_A          187 -DGTIYFGS--DKVYAIN-PDGTEKWNFYAGY-WTVTRPAISEDGTIYVTSL-DGHLYAIN-PDGTEKWRFKTGK--RIE  257 (330)
T ss_dssp             -TCCEEEES--SSEEEEC-TTSCEEEEECCSS-CCCSCCEECTTSCEEEEET-TTEEEEEC-TTSCEEEEEECSS--CCC
T ss_pred             -CCEEEEEe--CEEEEEC-CCCcEEEEEccCC-cceeceEECCCCeEEEEcC-CCeEEEEC-CCCCEeEEeeCCC--Ccc
Confidence             89999999  7899999 6668889866432 3356678888999999995 57899998 5788888876542  234


Q ss_pred             eeEEEeeCCeEEEEEcCCeEEEEcCCCCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEEeeecCeeEEe
Q 006913          275 YAPVVDSNGWISVGSLDGLLYSFSPSGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLMVVGQFSSL  347 (626)
Q Consensus       275 sspvvD~dG~IWVGT~~gGLy~~d~~g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~t~~Ggl~~~  347 (626)
                      .+++++.+|+||+||.+++|+++|++|+..|....        +.+.+.+++.|.+|+||+++.  .|.+...
T Consensus       258 ~~~~~~~~g~l~v~t~~ggl~~~d~~g~~~~~~~~--------~~~~~~~~~~d~~g~l~~gt~--~G~~~~~  320 (330)
T 3hxj_A          258 SSPVIGNTDTIYFGSYDGHLYAINPDGTEKWNFET--------GSWIIATPVIDENGTIYFGTR--NGKFYAL  320 (330)
T ss_dssp             SCCEECTTSCEEEECTTCEEEEECTTSCEEEEEEC--------SSCCCSCCEECTTCCEEEECT--TSCEEEE
T ss_pred             ccceEcCCCeEEEecCCCCEEEECCCCcEEEEEEc--------CCccccceEEcCCCEEEEEcC--CCeEEEE
Confidence            55778889999999999999999998888886552        233344567889999998653  4666543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.92  E-value=1.8e-22  Score=235.54  Aligned_cols=318  Identities=9%  Similarity=0.082  Sum_probs=210.9

Q ss_pred             ceeeeeEEeeCCEEEEEeCCcEEEEcC-CCCEEEEEeCCC-----CCCcccCeEEecCCeEEEEE-CCeEEEEECCCCcc
Q 006913           37 FRLSKPLIGEDGKIYACSEKTLFAFES-NGTIAWSLDLDF-----TCNIGTAPVHGGTGEVYIVA-ENRVLKVDLLKIGT  109 (626)
Q Consensus        37 ~~~Sspvid~dG~IwIgSdggL~a~d~-~G~~~W~~~~~~-----~~~i~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~  109 (626)
                      ....+...|.+|.||+|+.+||+.++. ++.+........     ....+.++++|.+|+||+|| ++||+++++.+..+
T Consensus       263 ~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~  342 (795)
T 4a2l_A          263 NYIRSLAMDSQNRLWIGTFNDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRF  342 (795)
T ss_dssp             SBEEEEEECTTSCEEEEESSCEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSS
T ss_pred             CeEEEEEEcCCCCEEEEeCChhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccc
Confidence            345567788899999999879999998 555543221110     01345678899999999999 68999999876532


Q ss_pred             ccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC-CcEEEEECCccccccccccccc-CCCCCccc
Q 006913          110 SESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTK-TDVDCYFT  187 (626)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~-~l~~~~i~  187 (626)
                           ................|..+..|.+|+||+||.++||+++++. ++..... .       ...... .+.... .
T Consensus       343 -----~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~-~-------~~~~~~~~l~~~~-v  408 (795)
T 4a2l_A          343 -----KNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYT-L-------QEDESARGIGSNN-I  408 (795)
T ss_dssp             -----EEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEEC-C-------C------CCSCSC-E
T ss_pred             -----eEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEe-c-------CCCCcccCCCCcc-E
Confidence                 2221111112233456788888999999999998999999986 6554321 0       000000 111122 3


Q ss_pred             cceEEEcCCCe-EEEEcCCCeEEEEeCCCCeEEEEEcCC---CCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEE
Q 006913          188 SVPVIDQCEGS-IYISNTQGELYSLSAHSPYFNWIQDLS---SFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILW  263 (626)
Q Consensus       188 sspviD~~dG~-LwIGT~~GgL~~ld~~tg~~~w~~~~~---s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w  263 (626)
                      .+++.|. +|+ ||||+.++||+++|++++++..+....   ....+.+++.|.+|+||+|+.  .+++.+|+.++.+..
T Consensus       409 ~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~~  485 (795)
T 4a2l_A          409 KAVYVDE-KKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL--SALVRFNPEQRSFTT  485 (795)
T ss_dssp             EEEEEET-TTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES--SCEEEEETTTTEEEE
T ss_pred             EEEEEcC-CCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec--CceeEEeCCCCeEEE
Confidence            5677786 889 999999889999999998876554311   123578889999999999995  468889988886654


Q ss_pred             EEec---CCC-CCceeeEEEeeCCeEEEEEcCCeEEEEcCCCCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEEee
Q 006913          264 HKSV---GPL-GSAEYAPVVDSNGWISVGSLDGLLYSFSPSGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLM  339 (626)
Q Consensus       264 ~~~~---~~l-~~~~sspvvD~dG~IWVGT~~gGLy~~d~~g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~t  339 (626)
                      ....   ..+ ...+.++.+|++|+||+||. +||+++++.+....+.......  .++.+.|.+|++|.+|+||++|. 
T Consensus       486 ~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~~~~~~~~--~l~~~~i~~i~~d~~g~lWigT~-  561 (795)
T 4a2l_A          486 IEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDIQKASILPVS--NVTKLFTNCIYEASNGIIWVGTR-  561 (795)
T ss_dssp             CCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEEEECCCSCSC--GGGGSCEEEEEECTTSCEEEEES-
T ss_pred             ccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeEEEecCCCCC--CCCCCeeEEEEECCCCCEEEEeC-
Confidence            3221   011 12356688999999999998 8999999864433322110122  25677889999999999998875 


Q ss_pred             ecCeeEEec-ccCCcceeeecCcee----eeeec-cccceeeee
Q 006913          340 VVGQFSSLL-SKSDLQHFVLDESLV----LAFLT-ASNQKLVAS  377 (626)
Q Consensus       340 ~~Ggl~~~~-~~~d~~~f~~d~gli----~~~~~-a~~~~~~~~  377 (626)
                        +|+..+. ....+.+|...+|++    .++.. ..+...+++
T Consensus       562 --~Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t  603 (795)
T 4a2l_A          562 --EGFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST  603 (795)
T ss_dssp             --SCEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE
T ss_pred             --CCceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc
Confidence              2555443 344577887766663    33322 235555555

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.91  E-value=2.6e-21  Score=225.80  Aligned_cols=286  Identities=14%  Similarity=0.082  Sum_probs=195.1

Q ss_pred             eeeeeEEeeCCEEEEEe-CCcEEEEcC-CCCEEEEEeCCC------CCCcccCeEEecCCeEEEEECCeEEEEECCCCcc
Q 006913           38 RLSKPLIGEDGKIYACS-EKTLFAFES-NGTIAWSLDLDF------TCNIGTAPVHGGTGEVYIVAENRVLKVDLLKIGT  109 (626)
Q Consensus        38 ~~Sspvid~dG~IwIgS-dggL~a~d~-~G~~~W~~~~~~------~~~i~~sp~iD~dG~IwVgT~ggL~~id~~~~~~  109 (626)
                      ...+.++|.+|.||+|+ .+||+++|. ++++.. +....      ....+.+++.|.+|+||+||.+||+++++.++.+
T Consensus       216 ~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~  294 (795)
T 4a2l_A          216 QIQAILQQSPTRIWVATEGAGLFLINPKTKEIKN-YLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFNDLNIYHEGTDSF  294 (795)
T ss_dssp             CEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEE-ECCCTTCTTSCSCSBEEEEEECTTSCEEEEESSCEEEEETTTTEE
T ss_pred             eeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEE-eecCCCCccccCCCeEEEEEEcCCCCEEEEeCChhheEcCCCCeE
Confidence            34566788899999999 569999998 555432 22211      0133567788999999999977999999887632


Q ss_pred             ccceeEEEec-CCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccc
Q 006913          110 SESATQVFYG-TGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFT  187 (626)
Q Consensus       110 ~~~~~~~~~~-~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~  187 (626)
                           ..... ...........|..+..|.+|+||+||.++||+.+++. +.+.... .    ..    ....+... ..
T Consensus       295 -----~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~-~----~~----~~~~l~~~-~V  359 (795)
T 4a2l_A          295 -----ASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIR-N----IP----YKNSLSDN-VV  359 (795)
T ss_dssp             -----EEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEEC-C----CT----TSSSCSCS-SE
T ss_pred             -----EEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEc-C----CC----CCCCCCCC-ee
Confidence                 22111 11112233456888899999999999999999999975 5443321 1    00    01122222 23


Q ss_pred             cceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCC-------CCCcceeeeeecCCe-EEEEEcCCCEEEEEECCCC
Q 006913          188 SVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLS-------SFDKAFTLTPGNNGY-LYVTIPVRALVLALDTSSG  259 (626)
Q Consensus       188 sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~-------s~~~v~sI~~D~dG~-LwVGT~~gG~l~alD~~tG  259 (626)
                      .+++.|+ +|+|||||.++||++++++++++..+....       ....+.+++.|.+|+ ||||+. +++++.+|+.++
T Consensus       360 ~~i~~d~-~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~-~~Gl~~~d~~~~  437 (795)
T 4a2l_A          360 SCIVEDK-DKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTH-AGGLSILHRNSG  437 (795)
T ss_dssp             EEEEECT-TSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEET-TTEEEEEETTTC
T ss_pred             EEEEECC-CCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeC-cCceeEEeCCCC
Confidence            5677786 999999999989999999998887764221       124578899999999 999995 468999998888


Q ss_pred             cEEEEEecC-CC-CCceeeEEEeeCCeEEEEEcCCeEEEEcCCCC-EEEEeeccCCCCccccCceEEEEEEecCCcEEEE
Q 006913          260 NILWHKSVG-PL-GSAEYAPVVDSNGWISVGSLDGLLYSFSPSGV-LNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAIL  336 (626)
Q Consensus       260 ~~~w~~~~~-~l-~~~~sspvvD~dG~IWVGT~~gGLy~~d~~g~-~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~  336 (626)
                      ++....... .+ ...+.++.+|++|+||+||. +||+++++... ...+...  .+...+..+.|++|++|++|+||++
T Consensus       438 ~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~i~~d~~g~lWig  514 (795)
T 4a2l_A          438 QVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKE--KDGTPVVSKQITTLFRDSHKRLWIG  514 (795)
T ss_dssp             CEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBC--TTCCBCCCCCEEEEEECTTCCEEEE
T ss_pred             cEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEcccc--ccccccCCceEEEEEECCCCCEEEE
Confidence            765432211 11 23456788899999999997 79999998644 3333221  1111245567899999999999998


Q ss_pred             EeeecCeeEEe
Q 006913          337 CLMVVGQFSSL  347 (626)
Q Consensus       337 T~t~~Ggl~~~  347 (626)
                      |.   +|+..+
T Consensus       515 t~---~Gl~~~  522 (795)
T 4a2l_A          515 GE---EGLSVF  522 (795)
T ss_dssp             ES---SCEEEE
T ss_pred             eC---CceEEE
Confidence            75   455444

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.90  E-value=1e-20  Score=220.28  Aligned_cols=299  Identities=8%  Similarity=0.016  Sum_probs=194.0

Q ss_pred             ceeeeeEEeeCCEEEEEeCCcEEEEcCCCCEEEEEeCCCC--------CCcccCeEEecCCe-EEEEECC-eEEEEECCC
Q 006913           37 FRLSKPLIGEDGKIYACSEKTLFAFESNGTIAWSLDLDFT--------CNIGTAPVHGGTGE-VYIVAEN-RVLKVDLLK  106 (626)
Q Consensus        37 ~~~Sspvid~dG~IwIgSdggL~a~d~~G~~~W~~~~~~~--------~~i~~sp~iD~dG~-IwVgT~g-gL~~id~~~  106 (626)
                      ....+.+.|.+|.||+||.+||.+||... +. .+.....        .+.+.++++|.+|+ |||||.+ ||+++|+.+
T Consensus        19 n~V~~I~qD~~G~lWigT~~GL~ryDG~~-f~-~~~~~~~~~~~~~l~~n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~   96 (781)
T 3v9f_A           19 NYVLSITQDKQGFLWFATEEGLNKFDGTR-FI-TYYKEEQSSSVQSITGNELNEVYTDPVQPVIWIATQRAGLNAYNYET   96 (781)
T ss_dssp             SBEEEEEECTTSCEEEEESSCEEEECSSS-EE-EECCCSSCSSSCCCSCSCEEEEEECSSSSEEEEEESSSCEEEEETTT
T ss_pred             CEeEEEEECCCCCEEEccCCcCccccCCc-eE-EEEcCCCCCccccccccccceEEEcCCCCEEEEEeCCCCcceECCCC
Confidence            45667889999999999999999998642 32 2222111        12355778899999 9999965 999999987


Q ss_pred             CccccceeEEEecCCCCCCCCCCeeEEEEEEc--CCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCC
Q 006913          107 IGTSESATQVFYGTGSGKGGTGAIAGIAVSTS--SSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVD  183 (626)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~--dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~  183 (626)
                      ..+    ..+..............|..+..+.  +|.||+++..+||+++++. +++. .+..       ..  ...+..
T Consensus        97 ~~f----~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~lwi~t~~~gl~~~~~~~~~~~-~~~~-------~~--~~~l~~  162 (781)
T 3v9f_A           97 QSF----SVYQYNPEDPQSLITNDVTHITSSVQAGKGLWVCTYYRGIEYLDIATGKFT-HYNK-------ST--VPALPS  162 (781)
T ss_dssp             TEE----EEECCCTTCSSSCSCSCEEEEEECSSTTSEEEEEESSSCEEEEETTTTEEE-EEST-------TT--CTTCSC
T ss_pred             CeE----EeeccccCCCCCcccCcceEEEecCccCCCEEEEECCCCeeEEECCCCeEE-eecc-------Cc--ccCCCc
Confidence            642    1111111111112223566777888  8999999977899999986 5442 2211       00  000111


Q ss_pred             CccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCC------CCCcceeeeeecCCeEEEEEcCCCEEEEEECC
Q 006913          184 CYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLS------SFDKAFTLTPGNNGYLYVTIPVRALVLALDTS  257 (626)
Q Consensus       184 ~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~------s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~  257 (626)
                      .. ..+++.|. +|.||||+.++||+++|++++++..+....      ....+.+++.|.+|+|||||. + +++.+|+.
T Consensus       163 ~~-i~~i~~d~-~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~-~-Gl~~~d~~  238 (781)
T 3v9f_A          163 EQ-TWTATEAE-DGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTS-K-GLALFNAN  238 (781)
T ss_dssp             CC-EEEEEEEE-TTEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEET-T-EEEEEETT
T ss_pred             cc-eEEEEECC-CCCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeC-C-cHheECCC
Confidence            11 24567786 899999998878999999998776543211      123577889999999999995 4 78899988


Q ss_pred             CCcEEEEEecC----CC-CCceeeEEEeeCCeEEEEEcCCeEEEEcCCCC-EEEEee------ccCCCCccccCceEEEE
Q 006913          258 SGNILWHKSVG----PL-GSAEYAPVVDSNGWISVGSLDGLLYSFSPSGV-LNKFSK------SDTSDSVIQSSPYWFHL  325 (626)
Q Consensus       258 tG~~~w~~~~~----~l-~~~~sspvvD~dG~IWVGT~~gGLy~~d~~g~-~~~~~~------~~~~~~~ilssp~V~~I  325 (626)
                      ++.+.......    .+ ...+.++++|.+|.|||||..+||+++++... +..+..      ....+...++.+.|++|
T Consensus       239 ~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i  318 (781)
T 3v9f_A          239 TETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYI  318 (781)
T ss_dssp             TTEEEC-----------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEE
T ss_pred             CCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEE
Confidence            77665322110    11 23466788999999999998889999998643 332221      01111113677889999


Q ss_pred             EEecCCcEEEEEeeecCeeEEecc-cCCcceee
Q 006913          326 LGPSIGLKAILCLMVVGQFSSLLS-KSDLQHFV  357 (626)
Q Consensus       326 l~DsdG~IwI~T~t~~Ggl~~~~~-~~d~~~f~  357 (626)
                      ++|.+|+|||+|  +.+|+..+.. ...+.+|.
T Consensus       319 ~~D~~g~lWigt--~~~Gl~~~~~~~~~~~~~~  349 (781)
T 3v9f_A          319 FQDSFNNIWIGT--WGGGINFISNAPPTFHTWS  349 (781)
T ss_dssp             EECSSCCEEEEE--BSSCEEEECSSCCSCEEEC
T ss_pred             EEeCCCCEEEEe--cCCeEEEeCCCCCcceeec
Confidence            999999999876  3467765533 33466664

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=99.87  E-value=3.6e-20  Score=214.99  Aligned_cols=293  Identities=11%  Similarity=0.082  Sum_probs=186.4

Q ss_pred             eeeeEEeeC-CEEEEEeCCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEECCeEEEEECCCCccccceeEE
Q 006913           39 LSKPLIGED-GKIYACSEKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVAENRVLKVDLLKIGTSESATQV  116 (626)
Q Consensus        39 ~Sspvid~d-G~IwIgSdggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT~ggL~~id~~~~~~~~~~~~~  116 (626)
                      ..+.++|.+ +.||||+++||+++++ ++++.....+.  ...+.++++|.+|+||+||++||+++++.+..+    ..+
T Consensus       193 i~~i~~d~~~~~lWigt~~Gl~~~~~~~~~~~~~~~l~--~~~i~~i~~d~~g~lWigT~~Gl~~~~~~~~~~----~~~  266 (758)
T 3ott_A          193 VNSLLEDTTRQCVWIGTEGYLFQYFPSTGQIKQTEAFH--NNSIKSLALDGNGDLLAGTDNGLYVYHNDTTPL----QHI  266 (758)
T ss_dssp             EEEEEEETTTTEEEEEEEEEEEEEETTTTEEEEEEEEE--EEEEEEEEECTTCCEEEEETTEEEEECCTTSCC----EEE
T ss_pred             eEEEEEECCCCEEEEEECCCCeEEcCCCCeEEeccCCC--CCeEEEEEEcCCCCEEEEeCCceeEEecCCCcE----EEE
Confidence            445677765 4699999889999998 55543211111  123567888999999999988999999877532    111


Q ss_pred             EecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccceEEEcCC
Q 006913          117 FYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCE  196 (626)
Q Consensus       117 ~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~d  196 (626)
                      ..............|..+..|.+|+||+||.. ||..+..+....... .  ...      ...... ....+++.|+ +
T Consensus       267 ~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~~-Gl~~~~~~~~~~~~~-~--~~~------~~~~~~-~~v~~i~~D~-~  334 (758)
T 3ott_A          267 IHDSRNIQSLTNNIIWNIFADQEHNIWLGTDY-GISLSRYNSALQFIP-I--SQI------TGTGDG-NQFYSLFRDS-K  334 (758)
T ss_dssp             CCCTTCTTSCSCSCEEEEEECTTCCEEEEESS-SEEEECCCC-CEEEE-H--HHH------SCSCCC-CBEEEEEECT-T
T ss_pred             EcCCCCcCcCCcCeEEEEEEcCCCCEEEEeCC-cccccccCCceeEEe-c--ccC------CCCCCC-ceEEEEEEcC-C
Confidence            11111112234456788889999999999975 777664443332221 0  000      001111 1235567786 9


Q ss_pred             CeEEEEcCCCeEEEEeCCCC---eEEEEEcCC-----CCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecC
Q 006913          197 GSIYISNTQGELYSLSAHSP---YFNWIQDLS-----SFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVG  268 (626)
Q Consensus       197 G~LwIGT~~GgL~~ld~~tg---~~~w~~~~~-----s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~  268 (626)
                      |+||||+. +||++++..++   .+.|+....     ....+.++++|.+|+||||| . ++++.+|+.++++.......
T Consensus       335 g~lWiGt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt-~-~GL~~~~~~~~~~~~~~~~~  411 (758)
T 3ott_A          335 GFYWFGGA-NGLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT-D-GSINRYDYATRQFIHYNIVD  411 (758)
T ss_dssp             CCEEEEET-TEEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEE-T-TEEEEEETTTTEEEEEEEEC
T ss_pred             CCEEEeeC-CcceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEe-C-CcHhhcCcCCCcEEEeecCC
Confidence            99999995 58999988764   455654211     12357889999999999999 4 48999999888775432111


Q ss_pred             C----CCCceeeEEEeeCCeEEEEEcCCeEEEEcCCC------C-EE--EEeeccCCCCccccCceEEEEEEecCCcEEE
Q 006913          269 P----LGSAEYAPVVDSNGWISVGSLDGLLYSFSPSG------V-LN--KFSKSDTSDSVIQSSPYWFHLLGPSIGLKAI  335 (626)
Q Consensus       269 ~----l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~g------~-~~--~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI  335 (626)
                      .    ....+.++++|++|+|||||.++||+++++..      . ..  ..+.  ...+  ++.+.|++|++|.+|+||+
T Consensus       412 ~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~--~~~~--l~~~~i~~i~~d~~g~lWi  487 (758)
T 3ott_A          412 NTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYS--VHNG--LSGMFINQIIPDNEGNVWV  487 (758)
T ss_dssp             CC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEEC--GGGT--CSCSCEEEEEECTTSCEEE
T ss_pred             CcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccc--cccc--cccceeeeEEEcCCCCEEE
Confidence            1    01235668899999999999989999998642      2 11  1111  1122  4567789999999999998


Q ss_pred             EEeeecCeeEEe-cccCCcceee
Q 006913          336 LCLMVVGQFSSL-LSKSDLQHFV  357 (626)
Q Consensus       336 ~T~t~~Ggl~~~-~~~~d~~~f~  357 (626)
                      +.++. +|+..+ .....+.++.
T Consensus       488 ~~~t~-~Gl~~~d~~~~~~~~~~  509 (758)
T 3ott_A          488 LLYNN-KGIDKINPRTREVTKLF  509 (758)
T ss_dssp             EETTC-SSEEEEETTTTEEEEEC
T ss_pred             EccCC-CCcEEEeCCCCceEEec
Confidence            33343 445444 3333455553

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=99.85  E-value=3.8e-19  Score=206.43  Aligned_cols=268  Identities=13%  Similarity=0.081  Sum_probs=177.4

Q ss_pred             CceeeeeEEeeCCEEEEEeCCcEEEEcCCCCEEEEEeCCC--CCCcccCeEEecCCeEEEEECCeEEEEECCCCccccce
Q 006913           36 AFRLSKPLIGEDGKIYACSEKTLFAFESNGTIAWSLDLDF--TCNIGTAPVHGGTGEVYIVAENRVLKVDLLKIGTSESA  113 (626)
Q Consensus        36 ~~~~Sspvid~dG~IwIgSdggL~a~d~~G~~~W~~~~~~--~~~i~~sp~iD~dG~IwVgT~ggL~~id~~~~~~~~~~  113 (626)
                      .....+.+.|.+|.||+||.+||.+||... +. .+....  ....+.+++.|.+|.|||||.+||+++|+.+..+    
T Consensus        21 ~n~V~~I~qD~~G~lWigT~~GL~ryDG~~-~~-~~~~~~~~~~~~i~~i~~d~~g~lWigT~~Gl~~yd~~~~~f----   94 (758)
T 3ott_A           21 ASVVSCFLQDSEGLIWIGSNKGLFSYDGYS-TQ-QHFTYGENNNTRIYCGVIIDNTYLYMGTDNGILVYNYRADRY----   94 (758)
T ss_dssp             CCCEEEEEECTTSCEEEEESSCEEEECSSC-EE-ECSCTTSTTSSCEEEEEEETTTEEEEEETTEEEEEETTTTEE----
T ss_pred             cceEEEEEECCCCCEEEEECCCccccCCCc-eE-EEEccCCCCCceEEEEEEcCCCcEEEEeCCCeEEEeCCCCEE----
Confidence            345677889999999999999999998522 21 121111  1123556788999999999999999999987532    


Q ss_pred             eEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEE
Q 006913          114 TQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVI  192 (626)
Q Consensus       114 ~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspvi  192 (626)
                         .. ..  . .....|..+ .+.+|.||++|.+ ||+++++. +++. .+..       .   ...+... ...+++.
T Consensus        95 ---~~-~~--~-~~~~~i~~i-~~~~g~lWigt~~-Gl~~~~~~~~~~~-~~~~-------~---~~~l~~~-~i~~i~~  153 (758)
T 3ott_A           95 ---EQ-PE--T-DFPTDVRTM-ALQGDTLWLGALN-GLYTYQLQSRKLT-SFDT-------R---RNGLPNN-TIYSIIR  153 (758)
T ss_dssp             ---CC-CS--C-CCCSCEEEE-EEETTEEEEEETT-EEEEEETTTCCEE-EECH-------H---HHCCSCS-CEEEEEE
T ss_pred             ---EC-cc--c-CCCceEEEE-EecCCcEEEEcCC-cceeEeCCCCeEE-Eecc-------C---CCCcCCC-eEEEEEE
Confidence               11 10  0 111234443 3468999999975 99999985 5443 2210       0   0011111 1245667


Q ss_pred             EcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCC----CCcceeeeeecCC-eEEEEEcCCCEEEEEECCCCcEEEEEec
Q 006913          193 DQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSS----FDKAFTLTPGNNG-YLYVTIPVRALVLALDTSSGNILWHKSV  267 (626)
Q Consensus       193 D~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s----~~~v~sI~~D~dG-~LwVGT~~gG~l~alD~~tG~~~w~~~~  267 (626)
                      |. +|.||||+. +||+++++.++++........    ...+.+++.|.+| .|||||.  ++++.+|+.++.+......
T Consensus       154 d~-~g~lWigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~--~Gl~~~~~~~~~~~~~~~l  229 (758)
T 3ott_A          154 TK-DNQIYVGTY-NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE--GYLFQYFPSTGQIKQTEAF  229 (758)
T ss_dssp             CT-TCCEEEEET-TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE--EEEEEEETTTTEEEEEEEE
T ss_pred             cC-CCCEEEEeC-CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC--CCCeEEcCCCCeEEeccCC
Confidence            85 899999996 579999998887765422111    1236778888765 6999994  4788899888765432222


Q ss_pred             CCCCCceeeEEEeeCCeEEEEEcCCeEEEEcCCC-CEEEEeeccCCCCccccCceEEEEEEecCCcEEEEEe
Q 006913          268 GPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPSG-VLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCL  338 (626)
Q Consensus       268 ~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~g-~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~  338 (626)
                      .  ...+.++++|.+|.||||| .+||+++++.. ++..+... ..+...++.+.|++|++|.+|+|||+|.
T Consensus       230 ~--~~~i~~i~~d~~g~lWigT-~~Gl~~~~~~~~~~~~~~~~-~~~~~~l~~~~i~~i~~D~~g~lWiGT~  297 (758)
T 3ott_A          230 H--NNSIKSLALDGNGDLLAGT-DNGLYVYHNDTTPLQHIIHD-SRNIQSLTNNIIWNIFADQEHNIWLGTD  297 (758)
T ss_dssp             E--EEEEEEEEECTTCCEEEEE-TTEEEEECCTTSCCEEECCC-TTCTTSCSCSCEEEEEECTTCCEEEEES
T ss_pred             C--CCeEEEEEEcCCCCEEEEe-CCceeEEecCCCcEEEEEcC-CCCcCcCCcCeEEEEEEcCCCCEEEEeC
Confidence            1  1235668889999999999 47999999864 44443321 1121236788899999999999999884

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.85  E-value=2.9e-18  Score=181.19  Aligned_cols=265  Identities=18%  Similarity=0.213  Sum_probs=182.7

Q ss_pred             eeeeEEeeCCEEEEEe-CCcEEEEcC-CCCEEEEEeCCCC--------CCcccCeEEecCCeEEEEE-CCeEEEEECCCC
Q 006913           39 LSKPLIGEDGKIYACS-EKTLFAFES-NGTIAWSLDLDFT--------CNIGTAPVHGGTGEVYIVA-ENRVLKVDLLKI  107 (626)
Q Consensus        39 ~Sspvid~dG~IwIgS-dggL~a~d~-~G~~~W~~~~~~~--------~~i~~sp~iD~dG~IwVgT-~ggL~~id~~~~  107 (626)
                      .++|++ .+|.||+++ ++.|+++|. +|+.+|.+.....        ......|.. .++.||+++ +++|+++|..++
T Consensus        46 ~~~p~v-~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~~~g~l~a~d~~tG  123 (376)
T 3q7m_A           46 NLHPAL-ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV-SGGHVYIGSEKAQVYALNTSDG  123 (376)
T ss_dssp             CCCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE-ETTEEEEEETTSEEEEEETTTC
T ss_pred             eeccEE-ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE-eCCEEEEEcCCCEEEEEECCCC
Confidence            358988 688999998 568999998 8999999877421        112334554 578999999 688999999887


Q ss_pred             ccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeC-CCcEEEEECCcccccccccccccCCCCCcc
Q 006913          108 GTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMT-HGQLLWSAGPVLDQLGYRQGCTKTDVDCYF  186 (626)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~-~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i  186 (626)
                      +     ..|.+....      .. ...+...++.||+++.+++|+++|+ +|+.+|.+..     .  .   .... ...
T Consensus       124 ~-----~~W~~~~~~------~~-~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~-----~--~---~~~~-~~~  180 (376)
T 3q7m_A          124 T-----VAWQTKVAG------EA-LSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNL-----D--M---PSLS-LRG  180 (376)
T ss_dssp             C-----EEEEEECSS------CC-CSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEEC-----C--C---------CC
T ss_pred             C-----EEEEEeCCC------ce-EcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeC-----C--C---Ccee-ecC
Confidence            5     356543211      11 1122345889999998889999997 5999998621     0  0   0000 001


Q ss_pred             ccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCC----------CcceeeeeecCCeEEEEEcCCCEEEEEEC
Q 006913          187 TSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSF----------DKAFTLTPGNNGYLYVTIPVRALVLALDT  256 (626)
Q Consensus       187 ~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~----------~~v~sI~~D~dG~LwVGT~~gG~l~alD~  256 (626)
                      ..+|+++  ++.||+++.++.|+++|+++|++.|.......          +....+. ..++.+|+++. ++.++++|+
T Consensus       181 ~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~v~~~~~-~g~l~~~d~  256 (376)
T 3q7m_A          181 ESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPV-VVNGVVFALAY-NGNLTALDL  256 (376)
T ss_dssp             CCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCE-EETTEEEEECT-TSCEEEEET
T ss_pred             CCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcE-EECCEEEEEec-CcEEEEEEC
Confidence            2457777  78999999999999999999999998764310          0111222 24789999985 578999999


Q ss_pred             CCCcEEEEEecCCCCCceeeEEEeeCCeEEEEEcCCeEEEEcC-CCCEEEEeeccCCCCccccCceEEEEEEecCCcEEE
Q 006913          257 SSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSP-SGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAI  335 (626)
Q Consensus       257 ~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~-~g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI  335 (626)
                      .+|+.+|....+.    ...++.+ ++.||+++.+++|+++|+ +|+..|........  ....+.+      .+|.||+
T Consensus       257 ~tG~~~w~~~~~~----~~~~~~~-~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~--~~~~~~~------~~~~l~v  323 (376)
T 3q7m_A          257 RSGQIMWKRELGS----VNDFIVD-GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHR--LLTSPVL------YNGNLVV  323 (376)
T ss_dssp             TTCCEEEEECCCC----EEEEEEE-TTEEEEEETTCCEEEEETTTCCEEEEECTTTTS--CCCCCEE------ETTEEEE
T ss_pred             CCCcEEeeccCCC----CCCceEE-CCEEEEEcCCCeEEEEECCCCcEEEeecccCCC--cccCCEE------ECCEEEE
Confidence            9999999876542    3456666 899999999999999997 58898876521111  1334432      3577776


Q ss_pred             EEeeecCeeEEe
Q 006913          336 LCLMVVGQFSSL  347 (626)
Q Consensus       336 ~T~t~~Ggl~~~  347 (626)
                      ++  ..|.+..+
T Consensus       324 ~~--~~g~l~~~  333 (376)
T 3q7m_A          324 GD--SEGYLHWI  333 (376)
T ss_dssp             EC--TTSEEEEE
T ss_pred             Ee--CCCeEEEE
Confidence            54  33555443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.84  E-value=2.2e-18  Score=182.08  Aligned_cols=274  Identities=21%  Similarity=0.272  Sum_probs=185.2

Q ss_pred             ceeeeeEEeeCCEEEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE-CCeEEEEECCCCccccce
Q 006913           37 FRLSKPLIGEDGKIYACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSESA  113 (626)
Q Consensus        37 ~~~Sspvid~dG~IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~  113 (626)
                      .+.+.|++ .+|.||+++ ++.|+++|. +|+.+|.+....  .....|++ .++.+|+++ +++|+++|+.++.     
T Consensus        94 ~~~~~~~~-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~--~~~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~-----  164 (376)
T 3q7m_A           94 LLSGGVTV-SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAG--EALSRPVV-SDGLVLIHTSNGQLQALNEADGA-----  164 (376)
T ss_dssp             CEEEEEEE-ETTEEEEEETTSEEEEEETTTCCEEEEEECSS--CCCSCCEE-ETTEEEEECTTSEEEEEETTTCC-----
T ss_pred             ccccCceE-eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCC--ceEcCCEE-ECCEEEEEcCCCeEEEEECCCCc-----
Confidence            45566776 688999998 568999998 899999987753  24456666 468999998 7889999998875     


Q ss_pred             eEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeC-CCcEEEEECCcccccccccccccCCCCCccccceEE
Q 006913          114 TQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMT-HGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVI  192 (626)
Q Consensus       114 ~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~-~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspvi  192 (626)
                      ..|.+........ ..... .+...++.||+++.+++|+++|+ +|+.+|....     ....+......-..+...|++
T Consensus       165 ~~W~~~~~~~~~~-~~~~~-~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~-----~~~~~~~~~~~~~~~~~~p~~  237 (376)
T 3q7m_A          165 VKWTVNLDMPSLS-LRGES-APTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRI-----SQATGSTEIDRLSDVDTTPVV  237 (376)
T ss_dssp             EEEEEECCC------CCCC-CCEEETTEEEECCTTTEEEEEETTTCCEEEEEEC-----CC-----------CCCCCCEE
T ss_pred             EEEEEeCCCCcee-ecCCC-CcEEECCEEEEEcCCCEEEEEECCCCcEEEEEec-----ccCCCCcccccccccCCCcEE
Confidence            3555433211000 00011 22334789999998889999998 5999998511     000000000000012355777


Q ss_pred             EcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCC
Q 006913          193 DQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGS  272 (626)
Q Consensus       193 D~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~  272 (626)
                      +  ++.||+++.+++|+++|+++|++.|......   ...+..+ +++||+++. ++.++++|+.+|+.+|...... ..
T Consensus       238 ~--~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~---~~~~~~~-~~~l~~~~~-~g~l~~~d~~tG~~~w~~~~~~-~~  309 (376)
T 3q7m_A          238 V--NGVVFALAYNGNLTALDLRSGQIMWKRELGS---VNDFIVD-GNRIYLVDQ-NDRVMALTIDGGVTLWTQSDLL-HR  309 (376)
T ss_dssp             E--TTEEEEECTTSCEEEEETTTCCEEEEECCCC---EEEEEEE-TTEEEEEET-TCCEEEEETTTCCEEEEECTTT-TS
T ss_pred             E--CCEEEEEecCcEEEEEECCCCcEEeeccCCC---CCCceEE-CCEEEEEcC-CCeEEEEECCCCcEEEeecccC-CC
Confidence            6  7999999999999999999999999876433   2334444 789999995 5789999999999999876321 12


Q ss_pred             ceeeEEEeeCCeEEEEEcCCeEEEEcC-CCCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEEeeecCeeE
Q 006913          273 AEYAPVVDSNGWISVGSLDGLLYSFSP-SGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLMVVGQFS  345 (626)
Q Consensus       273 ~~sspvvD~dG~IWVGT~~gGLy~~d~-~g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~t~~Ggl~  345 (626)
                      ...+|++. ++.||+++.++.|+++|+ +|+..|.....  ...+...|.+      .+|.||+++.  .|.+.
T Consensus       310 ~~~~~~~~-~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~--~~~~~~~~~~------~~~~l~v~~~--~G~l~  372 (376)
T 3q7m_A          310 LLTSPVLY-NGNLVVGDSEGYLHWINVEDGRFVAQQKVD--SSGFQTEPVA------ADGKLLIQAK--DGTVY  372 (376)
T ss_dssp             CCCCCEEE-TTEEEEECTTSEEEEEETTTCCEEEEEECC--TTCBCSCCEE------ETTEEEEEBT--TSCEE
T ss_pred             cccCCEEE-CCEEEEEeCCCeEEEEECCCCcEEEEEecC--CCcceeCCEE------ECCEEEEEeC--CCEEE
Confidence            34556665 799999999999999997 58998876531  1112334432      4788886543  35554

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.72  E-value=5.3e-14  Score=141.30  Aligned_cols=270  Identities=10%  Similarity=0.074  Sum_probs=176.5

Q ss_pred             ceeeeeEEeeCCEEEEEe--CCcEEEEcCCCCEEEEEeCCCCCCcccCeEEecCCeEEEEE--CCeEEEEECCCCccccc
Q 006913           37 FRLSKPLIGEDGKIYACS--EKTLFAFESNGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA--ENRVLKVDLLKIGTSES  112 (626)
Q Consensus        37 ~~~Sspvid~dG~IwIgS--dggL~a~d~~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT--~ggL~~id~~~~~~~~~  112 (626)
                      .....+++|.+|+||+++  +++|+.+|.++.+.. +...........+.+|.+|++|+++  +++|+++++++. .   
T Consensus        15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~---   89 (299)
T 2z2n_A           15 TGPYGITVSDKGKVWITQHKANMISCINLDGKITE-YPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGI-I---   89 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC-E---
T ss_pred             CCccceEECCCCCEEEEecCCCcEEEEcCCCCeEE-ecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCc-E---
Confidence            455677888899999998  367999998766543 3222111234567788999999998  478999998742 1   


Q ss_pred             eeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEc-CCeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccceE
Q 006913          113 ATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVK-GRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPV  191 (626)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~-~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspv  191 (626)
                       ..+...      .....+..+..+.+|+||+++. +++|+.++++|+......+            ..   ......++
T Consensus        90 -~~~~~~------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~------------~~---~~~~~~i~  147 (299)
T 2z2n_A           90 -KEYTLP------NPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELP------------NK---GSYPSFIT  147 (299)
T ss_dssp             -EEEECS------STTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECS------------ST---TCCEEEEE
T ss_pred             -EEEeCC------CcCCCceeeEECCCCCEEEEecCCceEEEECCCCCEEEecCC------------CC---CCCCceEE
Confidence             112111      0122345566678899999875 5789999997765432100            00   00123466


Q ss_pred             EEcCCCeEEEEcC-CCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCC
Q 006913          192 IDQCEGSIYISNT-QGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPL  270 (626)
Q Consensus       192 iD~~dG~LwIGT~-~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l  270 (626)
                      +|+ +|+||+++. .++|+++|+ ++++...........+..++.+.+|+||+++...+.++.+|+ ++.+.. ......
T Consensus       148 ~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~  223 (299)
T 2z2n_A          148 LGS-DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIPTP  223 (299)
T ss_dssp             ECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSST
T ss_pred             EcC-CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECCCC
Confidence            775 889999875 578999999 666654322122234567888989999999866678999998 787653 222211


Q ss_pred             CCceeeEEEeeCCeEEEEEc-CCeEEEEcCCCCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEEeeecCeeEEe
Q 006913          271 GSAEYAPVVDSNGWISVGSL-DGLLYSFSPSGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLMVVGQFSSL  347 (626)
Q Consensus       271 ~~~~sspvvD~dG~IWVGT~-~gGLy~~d~~g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~t~~Ggl~~~  347 (626)
                      ......+++|++|+||+++. +++|+++++++.+..+...   .    ....+..+.. .+|+||+++.  .+++..+
T Consensus       224 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~---~----~~~~~~~i~~-~~g~l~v~~~--~~~l~~~  291 (299)
T 2z2n_A          224 NARPHAITAGAGIDLWFTEWGANKIGRLTSNNIIEEYPIQ---I----KSAEPHGICF-DGETIWFAME--CDKIGKL  291 (299)
T ss_dssp             TCCEEEEEECSTTCEEEEETTTTEEEEEETTTEEEEEECS---S----SSCCEEEEEE-CSSCEEEEET--TTEEEEE
T ss_pred             CCCceeEEECCCCCEEEeccCCceEEEECCCCceEEEeCC---C----CCCccceEEe-cCCCEEEEec--CCcEEEE
Confidence            12355688898999999984 5799999997755433221   1    1233566777 8999998764  3566544

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.72  E-value=3.3e-14  Score=142.92  Aligned_cols=264  Identities=10%  Similarity=0.078  Sum_probs=173.8

Q ss_pred             ceeeeeEEeeCCEEEEEe--CCcEEEEcCCCCEEEEEeCCCCCCcccCeEEecCCeEEEEE--CCeEEEEECCCCccccc
Q 006913           37 FRLSKPLIGEDGKIYACS--EKTLFAFESNGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA--ENRVLKVDLLKIGTSES  112 (626)
Q Consensus        37 ~~~Sspvid~dG~IwIgS--dggL~a~d~~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT--~ggL~~id~~~~~~~~~  112 (626)
                      .......+|.+|+||+++  +++|+.++.++++.. +..+........+.+|.+|++|+++  +++|+++|+. +..   
T Consensus        20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~---   94 (300)
T 2qc5_A           20 SGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF---   94 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE---
T ss_pred             CCcceeeECCCCCEEEEcCCCCeEEEECCCCceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe---
Confidence            344567888899999997  468999998766543 3332211234466788899999998  4789999988 421   


Q ss_pred             eeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEc-CCeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccceE
Q 006913          113 ATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVK-GRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPV  191 (626)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~-~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspv  191 (626)
                       ..+....      ....+..+..+.+|+||+++. +++|+.++++|+......      +      ..   ......++
T Consensus        95 -~~~~~~~------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~------~------~~---~~~~~~i~  152 (300)
T 2qc5_A           95 -TEYPLPQ------PDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDL------P------NK---GSYPAFIT  152 (300)
T ss_dssp             -EEEECSS------TTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEEC------S------ST---TCCEEEEE
T ss_pred             -EEecCCC------CCCCCccceECCCCCEEEEccCCCeEEEECCCCCEEEccC------C------CC---CCCceeEE
Confidence             1121110      112345566678899999986 578999998877653210      0      00   00123466


Q ss_pred             EEcCCCeEEEEcC-CCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCC
Q 006913          192 IDQCEGSIYISNT-QGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPL  270 (626)
Q Consensus       192 iD~~dG~LwIGT~-~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l  270 (626)
                      +|. +|+||+++. +++|++++. ++++...........+..++.|.+|+||+++..++.++.+++ +|.......... 
T Consensus       153 ~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~-  228 (300)
T 2qc5_A          153 LGS-DNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTP-  228 (300)
T ss_dssp             ECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSST-
T ss_pred             ECC-CCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCC-
Confidence            775 888999986 578999999 455543322122234567888989999999876678999997 676654322211 


Q ss_pred             CCceeeEEEeeCCeEEEEEcC-CeEEEEcCCCCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEEe
Q 006913          271 GSAEYAPVVDSNGWISVGSLD-GLLYSFSPSGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCL  338 (626)
Q Consensus       271 ~~~~sspvvD~dG~IWVGT~~-gGLy~~d~~g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~  338 (626)
                      ......+++|++|+||+++.. ++|++++++++...+...   .    ....+.+|..|.+|+||+++.
T Consensus       229 ~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~---~----~~~~~~~i~~~~~g~l~v~~~  290 (300)
T 2qc5_A          229 NARPHAITAGKNSEIWFTEWGANQIGRITNDNTIQEYQLQ---T----ENAEPHGITFGKDGSVWFALK  290 (300)
T ss_dssp             TCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECC---S----TTCCCCCEEECTTSCEEEECS
T ss_pred             CCCceEEEECCCCCEEEeccCCCeEEEECCCCcEEEEECC---c----cCCccceeEeCCCCCEEEEcc
Confidence            123456888989999999964 799999998766544221   1    112235688899999997653

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.58  E-value=2.7e-12  Score=145.68  Aligned_cols=179  Identities=18%  Similarity=0.153  Sum_probs=110.9

Q ss_pred             eeeeeEEeeCCEEEEEeC--CcEEEEcC--CCCEEEEEeCCCCC---------CcccCeEEe-cCCe----EEEEE-CCe
Q 006913           38 RLSKPLIGEDGKIYACSE--KTLFAFES--NGTIAWSLDLDFTC---------NIGTAPVHG-GTGE----VYIVA-ENR   98 (626)
Q Consensus        38 ~~Sspvid~dG~IwIgSd--ggL~a~d~--~G~~~W~~~~~~~~---------~i~~sp~iD-~dG~----IwVgT-~gg   98 (626)
                      ..++|++ .+|.||+++.  +.|+++|.  +|+.+|++......         .....+.+. .++.    ||+++ ++.
T Consensus        54 ~~~tP~v-~~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~  132 (599)
T 1w6s_A           54 HEGAPLV-VDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGN  132 (599)
T ss_dssp             CCSCCEE-ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSE
T ss_pred             ceeccEE-ECCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCE
Confidence            4689999 6889999985  67999997  89999998764320         112345552 3566    99998 789


Q ss_pred             EEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEc------CCeEEEEeCC-CcEEEEECCccccc
Q 006913           99 VLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVK------GRALFAFMTH-GQLLWSAGPVLDQL  171 (626)
Q Consensus        99 L~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~------~gGL~a~d~~-G~~~w~~~~~~~~~  171 (626)
                      |+++|..+++.     .|........  ....+...+...++.||+++.      ++.|+++|.. |+++|.+.......
T Consensus       133 l~AlDa~TG~~-----~W~~~~~~~~--~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~  205 (599)
T 1w6s_A          133 VAALNAETGET-----VWKVENSDIK--VGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDK  205 (599)
T ss_dssp             EEEEETTTCCE-----EEEEECCCGG--GTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHH
T ss_pred             EEEEECCCCCE-----EEeecCCCCC--ccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcc
Confidence            99999998863     5654322100  011222223335789999874      5789999974 99999862211000


Q ss_pred             cc---cc-------------ccc------cCCCCCccccceEEEcCCCeEEEEcCC----------------CeEEEEeC
Q 006913          172 GY---RQ-------------GCT------KTDVDCYFTSVPVIDQCEGSIYISNTQ----------------GELYSLSA  213 (626)
Q Consensus       172 ~~---~~-------------~~~------~~l~~~~i~sspviD~~dG~LwIGT~~----------------GgL~~ld~  213 (626)
                      ..   ..             +..      -...+......+.+|...+.||+++.+                +.|+++|+
T Consensus       206 ~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~  285 (599)
T 1w6s_A          206 DLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDA  285 (599)
T ss_dssp             HHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEET
T ss_pred             ccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeC
Confidence            00   00             000      000011122346676546778888765                36888888


Q ss_pred             CCCeEEEEEcC
Q 006913          214 HSPYFNWIQDL  224 (626)
Q Consensus       214 ~tg~~~w~~~~  224 (626)
                      ++|+++|.+..
T Consensus       286 ~TG~~~W~~q~  296 (599)
T 1w6s_A          286 DTGEAKFGYQK  296 (599)
T ss_dssp             TTCCEEEEEES
T ss_pred             CCCceeeEeec
Confidence            88888887654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.57  E-value=3.7e-12  Score=146.89  Aligned_cols=288  Identities=15%  Similarity=0.193  Sum_probs=179.1

Q ss_pred             eeeeeEEeeCCEEEEEe-CCcEEEEcC-CCCEEEEEeCCCCC---------CcccCeEEecCCeEEEEE-CCeEEEEECC
Q 006913           38 RLSKPLIGEDGKIYACS-EKTLFAFES-NGTIAWSLDLDFTC---------NIGTAPVHGGTGEVYIVA-ENRVLKVDLL  105 (626)
Q Consensus        38 ~~Sspvid~dG~IwIgS-dggL~a~d~-~G~~~W~~~~~~~~---------~i~~sp~iD~dG~IwVgT-~ggL~~id~~  105 (626)
                      +.++|++ .+|.||+++ ++.|+++|. +|+.+|++......         ....+|.+ .++.||+++ ++.|+++|..
T Consensus        62 ~~~~P~v-~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~v~v~~~dg~l~AlDa~  139 (689)
T 1yiq_A           62 VEATPIV-VDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV-WKGKVYVGVLDGRLEAIDAK  139 (689)
T ss_dssp             CCCCCEE-ETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE-ETTEEEEECTTSEEEEEETT
T ss_pred             ceecCEE-ECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE-ECCEEEEEccCCEEEEEECC
Confidence            5788998 789999998 567999998 99999998754210         11234565 468999998 8899999999


Q ss_pred             CCccccceeEEEecCC-CCCCCCCCeeEEEEEEcCCeEEEEEc------CCeEEEEeC-CCcEEEEECCcccc-c-cccc
Q 006913          106 KIGTSESATQVFYGTG-SGKGGTGAIAGIAVSTSSSSVYINVK------GRALFAFMT-HGQLLWSAGPVLDQ-L-GYRQ  175 (626)
Q Consensus       106 ~~~~~~~~~~~~~~~~-~~~~~~~~~I~s~~~d~dG~LwIgT~------~gGL~a~d~-~G~~~w~~~~~~~~-~-~~~~  175 (626)
                      +++     ..|.+... ... . ...+...+...++.|++++.      ++.|+++|. +|+++|.+...... . .+..
T Consensus       140 TG~-----~~W~~~~~~~~~-~-~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~  212 (689)
T 1yiq_A          140 TGQ-----RAWSVDTRADHK-R-SYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEG  212 (689)
T ss_dssp             TCC-----EEEEEECCSCTT-S-CCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCS
T ss_pred             CCC-----EeeeecCcCCCC-C-CccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccc
Confidence            886     35655432 100 0 01122222335789999863      367999997 59999986221000 0 0000


Q ss_pred             -----ccccC--------CCCCccccceEEEcCCCeEEEEcCCCe-------------------EEEEeCCCCeEEEEEc
Q 006913          176 -----GCTKT--------DVDCYFTSVPVIDQCEGSIYISNTQGE-------------------LYSLSAHSPYFNWIQD  223 (626)
Q Consensus       176 -----~~~~~--------l~~~~i~sspviD~~dG~LwIGT~~Gg-------------------L~~ld~~tg~~~w~~~  223 (626)
                           .....        ..+......+.+|...+.||+++.++.                   |+++|+++|+..|.+.
T Consensus       213 ~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~  292 (689)
T 1yiq_A          213 KGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQ  292 (689)
T ss_dssp             HHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEE
T ss_pred             ccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeee
Confidence                 00000        001112245677754788999987753                   9999999999999764


Q ss_pred             CCC-----CCc----c-e----------e---------------------------------------------------
Q 006913          224 LSS-----FDK----A-F----------T---------------------------------------------------  232 (626)
Q Consensus       224 ~~s-----~~~----v-~----------s---------------------------------------------------  232 (626)
                      ...     .+.    + .          .                                                   
T Consensus       293 ~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~  372 (689)
T 1yiq_A          293 TTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAY  372 (689)
T ss_dssp             SSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCT
T ss_pred             cCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccc
Confidence            310     000    0 0          0                                                   


Q ss_pred             ---------------------eeee-cCCeEEEEEcC-------------------------------------------
Q 006913          233 ---------------------LTPG-NNGYLYVTIPV-------------------------------------------  247 (626)
Q Consensus       233 ---------------------I~~D-~dG~LwVGT~~-------------------------------------------  247 (626)
                                           ++.| ..|.+|+++..                                           
T Consensus       373 ~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~  452 (689)
T 1yiq_A          373 WKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKS  452 (689)
T ss_dssp             TTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTT
T ss_pred             cCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCC
Confidence                                 1112 12455554311                                           


Q ss_pred             -CCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEEEEEcCCeEEEEcC-CCCEEEEeeccCCCCccccCceEEEE
Q 006913          248 -RALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSP-SGVLNKFSKSDTSDSVIQSSPYWFHL  325 (626)
Q Consensus       248 -gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~-~g~~~~~~~~~~~~~~ilssp~V~~I  325 (626)
                       .+.+.++|+.||+++|+...+.  .....++...+|.|++|+.++.|++||. +|+.+|..+..   ..+...|..+  
T Consensus       453 ~~g~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~---~~~~~~p~ty--  525 (689)
T 1yiq_A          453 WSGKLIAWDPVKQQAAWEVPYVT--IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA---SGVMAAPVTY--  525 (689)
T ss_dssp             CEEEEEEEETTTTEEEEEEEESS--SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS---SCCCSCCEEE--
T ss_pred             cceeEEEEECCCCCeEeEccCCC--CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC---CCcccCceEE--
Confidence             1568888888899888876542  1122344445889999999999999997 59999976621   1134455432  


Q ss_pred             EEecCCcEEEEEeeecCe
Q 006913          326 LGPSIGLKAILCLMVVGQ  343 (626)
Q Consensus       326 l~DsdG~IwI~T~t~~Gg  343 (626)
                        ..+|..||.+....|+
T Consensus       526 --~~~G~qyv~~~~G~gg  541 (689)
T 1yiq_A          526 --SVDGEQYVTFMAGWGG  541 (689)
T ss_dssp             --EETTEEEEEEEECCCT
T ss_pred             --EECCEEEEEEEecCCc
Confidence              4689999888764333

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.56  E-value=2.7e-11  Score=121.49  Aligned_cols=241  Identities=12%  Similarity=0.036  Sum_probs=156.0

Q ss_pred             cccCeEEecCCeEEEEE--CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEc-CCeEEEEe
Q 006913           79 IGTAPVHGGTGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVK-GRALFAFM  155 (626)
Q Consensus        79 i~~sp~iD~dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~-~gGL~a~d  155 (626)
                      ...++.+|.+|++|+++  +++|+.+|+. +.+    ..+....      ....+..+..+.+|+||+++. +++|+.++
T Consensus        16 ~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~----~~~~~~~------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~   84 (299)
T 2z2n_A           16 GPYGITVSDKGKVWITQHKANMISCINLD-GKI----TEYPLPT------PDAKVMCLTISSDGEVWFTENAANKIGRIT   84 (299)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-CCE----EEEECSS------TTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred             CccceEECCCCCEEEEecCCCcEEEEcCC-CCe----EEecCCc------ccCceeeEEECCCCCEEEeCCCCCeEEEEC
Confidence            34567889999999998  4789999988 431    1111110      112345566778999999987 46799999


Q ss_pred             CCCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcC-CCeEEEEeCCCCeEEEEEcCCCCCcceeee
Q 006913          156 THGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT-QGELYSLSAHSPYFNWIQDLSSFDKAFTLT  234 (626)
Q Consensus       156 ~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~-~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~  234 (626)
                      ++|+.....      .+      ..   ......+++++ +|.||+++. +++|+++|+ ++++...........+..++
T Consensus        85 ~~g~~~~~~------~~------~~---~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~  147 (299)
T 2z2n_A           85 KKGIIKEYT------LP------NP---DSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFIT  147 (299)
T ss_dssp             TTSCEEEEE------CS------ST---TCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEE
T ss_pred             CCCcEEEEe------CC------Cc---CCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEE
Confidence            886643221      00      00   00123466775 899999864 678999999 55554432221223456788


Q ss_pred             eecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEEEEEc-CCeEEEEcCCCCEEEEeeccCCC
Q 006913          235 PGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSL-DGLLYSFSPSGVLNKFSKSDTSD  313 (626)
Q Consensus       235 ~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~-~gGLy~~d~~g~~~~~~~~~~~~  313 (626)
                      .+.+|++|+++...+.++.+|+ +|++........ ......+.++++|.||+++. +++|++++++++...+..   . 
T Consensus       148 ~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~---~-  221 (299)
T 2z2n_A          148 LGSDNALWFTENQNNAIGRITE-SGDITEFKIPTP-ASGPVGITKGNDDALWFVEIIGNKIGRITTSGEITEFKI---P-  221 (299)
T ss_dssp             ECTTSCEEEEETTTTEEEEECT-TCCEEEEECSST-TCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEEC---S-
T ss_pred             EcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCC-CCcceeEEECCCCCEEEEccCCceEEEECCCCcEEEEEC---C-
Confidence            8999999999865678999997 787654321111 12345678888999999985 578999999776544322   1 


Q ss_pred             CccccCceEEEEEEecCCcEEEEEeeecCeeEEecccCCcceee
Q 006913          314 SVIQSSPYWFHLLGPSIGLKAILCLMVVGQFSSLLSKSDLQHFV  357 (626)
Q Consensus       314 ~~ilssp~V~~Il~DsdG~IwI~T~t~~Ggl~~~~~~~d~~~f~  357 (626)
                         .....+..|..|.+|++|+++.. .+++..+.....+..+.
T Consensus       222 ---~~~~~~~~i~~~~~g~l~v~~~~-~~~i~~~d~~g~~~~~~  261 (299)
T 2z2n_A          222 ---TPNARPHAITAGAGIDLWFTEWG-ANKIGRLTSNNIIEEYP  261 (299)
T ss_dssp             ---STTCCEEEEEECSTTCEEEEETT-TTEEEEEETTTEEEEEE
T ss_pred             ---CCCCCceeEEECCCCCEEEeccC-CceEEEECCCCceEEEe
Confidence               12234568899999999976522 35665553344445554

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.55  E-value=8.1e-12  Score=141.04  Aligned_cols=275  Identities=17%  Similarity=0.155  Sum_probs=176.4

Q ss_pred             eeeEEeeCCEEEEEe-CCcEEEEcC-CCCEEEEEeCCCC---CCcccCeEEecCCeEEEEE-------CCeEEEEECCCC
Q 006913           40 SKPLIGEDGKIYACS-EKTLFAFES-NGTIAWSLDLDFT---CNIGTAPVHGGTGEVYIVA-------ENRVLKVDLLKI  107 (626)
Q Consensus        40 Sspvid~dG~IwIgS-dggL~a~d~-~G~~~W~~~~~~~---~~i~~sp~iD~dG~IwVgT-------~ggL~~id~~~~  107 (626)
                      .+|++ .++.||+++ ++.|+++|. +|+.+|++.....   ..+..+|+++ +|.||+++       ++.|+++|..++
T Consensus       109 ~~~~~-~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG  186 (571)
T 2ad6_A          109 RGLAY-GAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTG  186 (571)
T ss_dssp             CCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTC
T ss_pred             cccEE-ECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CCEEEEEecCCccCCCCEEEEEECCCC
Confidence            45777 688999998 678999998 9999999876431   1244577774 68999986       368999999988


Q ss_pred             ccccceeEEEecCCCCC--------------------------------CCCCCeeEEEEEE-cCCeEEEEEcC------
Q 006913          108 GTSESATQVFYGTGSGK--------------------------------GGTGAIAGIAVST-SSSSVYINVKG------  148 (626)
Q Consensus       108 ~~~~~~~~~~~~~~~~~--------------------------------~~~~~~I~s~~~d-~dG~LwIgT~~------  148 (626)
                      +.     .|.+......                                ...+.....+..+ ..+.||+++.+      
T Consensus       187 ~~-----~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~  261 (571)
T 2ad6_A          187 EL-----KWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNE  261 (571)
T ss_dssp             CE-----EEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCG
T ss_pred             cE-----EEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccC
Confidence            63     5544322110                                0000111122333 46889998742      


Q ss_pred             ----------CeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEE-Ec-CCC----eEEEEcCCCeEEEE
Q 006913          149 ----------RALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVI-DQ-CEG----SIYISNTQGELYSL  211 (626)
Q Consensus       149 ----------gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspvi-D~-~dG----~LwIGT~~GgL~~l  211 (626)
                                +.|+++|++ |+.+|.+..     .     .+..-+.....+|++ +. .+|    .+++++.+|.|++|
T Consensus       262 ~~~~gd~~y~~~v~Ald~~tG~~~W~~~~-----~-----~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~l  331 (571)
T 2ad6_A          262 TMRPGDNKWTMTIWGRDLDTGMAKWGYQK-----T-----PHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTL  331 (571)
T ss_dssp             GGSCSCCTTTTEEEEEETTTCCEEEEEES-----S-----TTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEE
T ss_pred             CccCCCceeEEEEEEEecCCCcEEEEecC-----C-----CCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEE
Confidence                      259999984 999998621     0     000000011233443 31 145    36778889999999


Q ss_pred             eCCCCeEEEEEcCCC-CC----------c-c--------------------------eeeeeec-CCeEEEEEc------
Q 006913          212 SAHSPYFNWIQDLSS-FD----------K-A--------------------------FTLTPGN-NGYLYVTIP------  246 (626)
Q Consensus       212 d~~tg~~~w~~~~~s-~~----------~-v--------------------------~sI~~D~-dG~LwVGT~------  246 (626)
                      |+++|++.|...... ..          . +                          ..++.|. .|.+|+.+.      
T Consensus       332 D~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~  411 (571)
T 2ad6_A          332 NRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDW  411 (571)
T ss_dssp             ETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEE
T ss_pred             ECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccc
Confidence            999999999865321 00          0 0                          1123443 467777652      


Q ss_pred             ------------------------------CCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEEEEEcCCeEEE
Q 006913          247 ------------------------------VRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYS  296 (626)
Q Consensus       247 ------------------------------~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy~  296 (626)
                                                    ..+.++++|..+|+.+|......  .....++...+|.||+|+.++.|++
T Consensus       412 ~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~--~~~~~~~~t~gg~v~~g~~dg~l~a  489 (571)
T 2ad6_A          412 EPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF--AAWGGTLYTKGGLVWYATLDGYLKA  489 (571)
T ss_dssp             EECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS--CCCSBCEEETTTEEEEECTTSEEEE
T ss_pred             cccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC--CccceeEEECCCEEEEEcCCCeEEE
Confidence                                          23689999999999999976552  1233444545899999999999999


Q ss_pred             EcC-CCCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEEeee
Q 006913          297 FSP-SGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLMV  340 (626)
Q Consensus       297 ~d~-~g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~t~  340 (626)
                      +|. +|+.+|.....  .. +..+|.+   + ..+|.+|+++...
T Consensus       490 ~D~~tG~~lw~~~~~--~~-~~~~p~~---~-~~~G~~yv~~~~G  527 (571)
T 2ad6_A          490 LDNKDGKELWNFKMP--SG-GIGSPMT---Y-SFKGKQYIGSMYG  527 (571)
T ss_dssp             EETTTCCEEEEEECS--SC-CCSCCEE---E-EETTEEEEEEEEC
T ss_pred             EECCCCCEEEEEeCC--CC-cEeeeEE---E-EECCEEEEEEECC
Confidence            997 59999976632  11 3445543   2 3579999887654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.54  E-value=3.2e-12  Score=130.81  Aligned_cols=235  Identities=11%  Similarity=0.055  Sum_probs=158.6

Q ss_pred             CEEE-EEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEECCeEEEEECCCCccccceeEEEecCCCCC
Q 006913           48 GKIY-ACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVAENRVLKVDLLKIGTSESATQVFYGTGSGK  124 (626)
Q Consensus        48 G~Iw-IgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT~ggL~~id~~~~~~~~~~~~~~~~~~~~~  124 (626)
                      |++. +++ ++.++++|. +|+++|++..... ....++.+..+|++++..+++|+.+|+ +++     ..|.+...   
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~-~~~~~~~~~pdG~ilvs~~~~V~~~d~-~G~-----~~W~~~~~---   74 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG-WECNSVAATKAGEILFSYSKGAKMITR-DGR-----ELWNIAAP---   74 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEECCTT-CCCCEEEECTTSCEEEECBSEEEEECT-TSC-----EEEEEECC---
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc-CCCcCeEECCCCCEEEeCCCCEEEECC-CCC-----EEEEEcCC---
Confidence            4444 444 678999999 9999999876431 123455667899999955889999999 454     46665431   


Q ss_pred             CCCCCeeEEEEEEcCCeEEEEEc--CCeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEE
Q 006913          125 GGTGAIAGIAVSTSSSSVYINVK--GRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYIS  202 (626)
Q Consensus       125 ~~~~~~I~s~~~d~dG~LwIgT~--~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIG  202 (626)
                        ....+.......+|+++++..  ++.+++++++|+.+|.+..     .  .......  .. ......+. +|++++.
T Consensus        75 --~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~-----~--~~~~~~~--~~-~~~v~~~~-~G~~lv~  141 (276)
T 3no2_A           75 --AGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEF-----E--TGIERPH--AQ-FRQINKNK-KGNYLVP  141 (276)
T ss_dssp             --TTCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEE-----C--CSCSSGG--GS-CSCCEECT-TSCEEEE
T ss_pred             --CCccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEec-----c--CCCCccc--cc-ccCceECC-CCCEEEE
Confidence              112344455567888888754  4568899999999998511     0  0000000  00 11123443 6666654


Q ss_pred             -cCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCC----CceeeE
Q 006913          203 -NTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLG----SAEYAP  277 (626)
Q Consensus       203 -T~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~----~~~ssp  277 (626)
                       ..++.|+++|++ |++.|......  .+.++....+|+++|+...++.++++|+.+|+++|++......    .....+
T Consensus       142 ~~~~~~v~~~d~~-G~~~w~~~~~~--~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~  218 (276)
T 3no2_A          142 LFATSEVREIAPN-GQLLNSVKLSG--TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQL  218 (276)
T ss_dssp             ETTTTEEEEECTT-SCEEEEEECSS--CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEE
T ss_pred             ecCCCEEEEECCC-CCEEEEEECCC--CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccc
Confidence             457889999999 79999876532  2334556678999988766778999999999999998543111    124556


Q ss_pred             EEeeCCeEEEEEcC-----------CeEEEEcCCCCEEEEee
Q 006913          278 VVDSNGWISVGSLD-----------GLLYSFSPSGVLNKFSK  308 (626)
Q Consensus       278 vvD~dG~IWVGT~~-----------gGLy~~d~~g~~~~~~~  308 (626)
                      ....+|+++|+.++           +.++.++++|++.|.+.
T Consensus       219 ~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~  260 (276)
T 3no2_A          219 FPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLN  260 (276)
T ss_dssp             EECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEEC
T ss_pred             eEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEec
Confidence            67779999999853           35999999999999765

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=99.54  E-value=1.2e-11  Score=139.96  Aligned_cols=279  Identities=15%  Similarity=0.157  Sum_probs=176.5

Q ss_pred             eeeEEeeCCEEEEEe-CCcEEEEcC-CCCEEEEEeCCCC---CCcccCeEEecC---C--eEEEEE-------CCeEEEE
Q 006913           40 SKPLIGEDGKIYACS-EKTLFAFES-NGTIAWSLDLDFT---CNIGTAPVHGGT---G--EVYIVA-------ENRVLKV  102 (626)
Q Consensus        40 Sspvid~dG~IwIgS-dggL~a~d~-~G~~~W~~~~~~~---~~i~~sp~iD~d---G--~IwVgT-------~ggL~~i  102 (626)
                      .+|++ .++.||+++ ++.|+++|. +|+.+|++.....   .....+|++..+   |  .||+++       ++.|+++
T Consensus       111 ~g~a~-~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~al  189 (582)
T 1flg_A          111 RGAAI-YGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFAR  189 (582)
T ss_dssp             CCCEE-ETTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEE
T ss_pred             CccEE-ECCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEE
Confidence            45666 688999998 678999998 9999999876431   123456776433   2  788875       4689999


Q ss_pred             ECCCCccccceeEEEecCCC---------------------CCC--------------CCCCeeEEEEEE-cCCeEEEEE
Q 006913          103 DLLKIGTSESATQVFYGTGS---------------------GKG--------------GTGAIAGIAVST-SSSSVYINV  146 (626)
Q Consensus       103 d~~~~~~~~~~~~~~~~~~~---------------------~~~--------------~~~~~I~s~~~d-~dG~LwIgT  146 (626)
                      |..+++.     .|......                     |..              ..+.....+..+ ..+.||+++
T Consensus       190 D~~tG~~-----~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~  264 (582)
T 1flg_A          190 DPDTGEE-----IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGA  264 (582)
T ss_dssp             CTTTCCE-----EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEE
T ss_pred             ECCCCCE-----EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeC
Confidence            9998864     44332210                     000              001111223344 568899988


Q ss_pred             cC------------------------CeEEEEeC-CCcEEEEECCcccccccccccccCCCCCccccceEE-Ec--CCC-
Q 006913          147 KG------------------------RALFAFMT-HGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVI-DQ--CEG-  197 (626)
Q Consensus       147 ~~------------------------gGL~a~d~-~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspvi-D~--~dG-  197 (626)
                      .+                        +.|+++|+ +|+.+|.+....          +..-+.....+|++ +.  .+| 
T Consensus       265 gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~----------~d~wd~~~~~~p~l~~~~~~~G~  334 (582)
T 1flg_A          265 GNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTP----------NDAWDFSGNNELVLFDYKAKDGK  334 (582)
T ss_dssp             CCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESST----------TCCSCCCCCCCCEEEEEECSSSC
T ss_pred             CCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCC----------CCcccccCCCCcEEEeeecCCCC
Confidence            31                        47999998 599999862100          00000001123333 31  134 


Q ss_pred             ---eEEEEcCCCeEEEEeCCCCeEEEEEcCCC-CC----------c---------------------------------c
Q 006913          198 ---SIYISNTQGELYSLSAHSPYFNWIQDLSS-FD----------K---------------------------------A  230 (626)
Q Consensus       198 ---~LwIGT~~GgL~~ld~~tg~~~w~~~~~s-~~----------~---------------------------------v  230 (626)
                         .|++++.+|.||++|+++|++.|...... ..          .                                 -
T Consensus       335 ~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w  414 (582)
T 1flg_A          335 IVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNW  414 (582)
T ss_dssp             EEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCS
T ss_pred             EEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCC
Confidence               57788899999999999999999765421 00          0                                 0


Q ss_pred             eeeeeec-CCeEEEEEc--------------------------------CCCEEEEEECCCCcEEEEEecCCCCCceeeE
Q 006913          231 FTLTPGN-NGYLYVTIP--------------------------------VRALVLALDTSSGNILWHKSVGPLGSAEYAP  277 (626)
Q Consensus       231 ~sI~~D~-dG~LwVGT~--------------------------------~gG~l~alD~~tG~~~w~~~~~~l~~~~ssp  277 (626)
                      ..++.|. .|.+|+...                                ..+.++++|+.+|+++|+.....  .....+
T Consensus       415 ~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~--~~~~g~  492 (582)
T 1flg_A          415 NPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL--PLWAGV  492 (582)
T ss_dssp             SCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS--CCCSCC
T ss_pred             CCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC--CCcccc
Confidence            0122232 356776542                                13689999999999999876542  122334


Q ss_pred             EEeeCCeEEEEEcCCeEEEEcC-CCCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEEeeecCe
Q 006913          278 VVDSNGWISVGSLDGLLYSFSP-SGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLMVVGQ  343 (626)
Q Consensus       278 vvD~dG~IWVGT~~gGLy~~d~-~g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~t~~Gg  343 (626)
                      +...+|.||+|+.++.|++||. +|+.+|..+.   ...+..+|.++    ..+|..||.+....|+
T Consensus       493 ~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~---~~g~~a~P~~y----~~~G~qYv~~~~G~gg  552 (582)
T 1flg_A          493 LATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT---GSGIVSPPITW----EQDGEQYLGVTVGYGG  552 (582)
T ss_dssp             EEETTTEEEEECTTSEEEEEETTTCCEEEEEEC---SSCCCSCCEEE----EETTEEEEEEEECCCS
T ss_pred             eEeCCCEEEEECCCCcEEEEECCCCCEEEEecC---CCCcccCceEE----EECCEEEEEEEccCCC
Confidence            4445899999999999999997 5999997763   22234556542    3689999988764333

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.54  E-value=2e-11  Score=137.76  Aligned_cols=221  Identities=15%  Similarity=0.163  Sum_probs=139.6

Q ss_pred             eeeeeEEeeCCEEEEEeC--CcEEEEcC--CCCEEEEEeCCCCC---------CcccCeEEecCCeEEEEE-CCeEEEEE
Q 006913           38 RLSKPLIGEDGKIYACSE--KTLFAFES--NGTIAWSLDLDFTC---------NIGTAPVHGGTGEVYIVA-ENRVLKVD  103 (626)
Q Consensus        38 ~~Sspvid~dG~IwIgSd--ggL~a~d~--~G~~~W~~~~~~~~---------~i~~sp~iD~dG~IwVgT-~ggL~~id  103 (626)
                      +.++|++ .+|.||+++.  +.|+++|.  +|+.+|++......         ....+|.+ .++.||+++ ++.|+++|
T Consensus        54 ~~~~P~v-~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~~dg~l~alD  131 (571)
T 2ad6_A           54 HEGAPLV-IGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY-GAGQIVKKQANGHLLALD  131 (571)
T ss_dssp             CCSCCEE-ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE-ETTEEEEECTTSEEEEEE
T ss_pred             cccccEE-ECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE-ECCEEEEEeCCCEEEEEE
Confidence            5689998 6899999985  56999996  89999998764321         11234666 468999998 78999999


Q ss_pred             CCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEc------CCeEEEEeC-CCcEEEEECCccccccc---
Q 006913          104 LLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVK------GRALFAFMT-HGQLLWSAGPVLDQLGY---  173 (626)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~------~gGL~a~d~-~G~~~w~~~~~~~~~~~---  173 (626)
                      ..+++     ..|.+.......  ...+...+...++.||+++.      ++.|+++|+ +|+.+|.+.........   
T Consensus       132 ~~tG~-----~~W~~~~~~~~~--~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~  204 (571)
T 2ad6_A          132 AKTGK-----INWEVEVCDPKV--GSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLA  204 (571)
T ss_dssp             TTTCC-----EEEEEECCCGGG--TCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBC
T ss_pred             CCCCC-----EEEEecCCCCCc--cceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccC
Confidence            98886     356543221100  01122222334789999976      578999998 59999986221000000   


Q ss_pred             cc-------------cccc------CCCCCccccceEEEcCCCeEEEEcCC----------------CeEEEEeCCCCeE
Q 006913          174 RQ-------------GCTK------TDVDCYFTSVPVIDQCEGSIYISNTQ----------------GELYSLSAHSPYF  218 (626)
Q Consensus       174 ~~-------------~~~~------~l~~~~i~sspviD~~dG~LwIGT~~----------------GgL~~ld~~tg~~  218 (626)
                      ..             +...      ...+......+.+|...+.||+++.+                +.|+++|+++|++
T Consensus       205 p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~  284 (571)
T 2ad6_A          205 KDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMA  284 (571)
T ss_dssp             TTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCE
T ss_pred             cccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcE
Confidence            00             0000      00011112346777546899999853                2599999999999


Q ss_pred             EEEEcCCCC-----Cccee-eeee--cCCe----EEEEEcCCCEEEEEECCCCcEEEEEecC
Q 006913          219 NWIQDLSSF-----DKAFT-LTPG--NNGY----LYVTIPVRALVLALDTSSGNILWHKSVG  268 (626)
Q Consensus       219 ~w~~~~~s~-----~~v~s-I~~D--~dG~----LwVGT~~gG~l~alD~~tG~~~w~~~~~  268 (626)
                      +|.+.....     +.... +..+  .+|+    +++++ .+|.++++|+.+|+++|.....
T Consensus       285 ~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~~w~~~~~  345 (571)
T 2ad6_A          285 KWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHID-RNGILYTLNRENGNLIVAEKVD  345 (571)
T ss_dssp             EEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEEC-TTSEEEEEETTTCCEEEEEESS
T ss_pred             EEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeC-CCcEEEEEECCCCCEEeeeccc
Confidence            999764311     11111 2223  3673    45555 5689999999999999987544

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.53  E-value=4.8e-11  Score=119.69  Aligned_cols=240  Identities=10%  Similarity=0.054  Sum_probs=155.8

Q ss_pred             ccCeEEecCCeEEEEE--CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEc-CCeEEEEeC
Q 006913           80 GTAPVHGGTGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVK-GRALFAFMT  156 (626)
Q Consensus        80 ~~sp~iD~dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~-~gGL~a~d~  156 (626)
                      ..++.+|.+|+||+++  +++|.++++. +.+    ..+....      ....+..+..+.+|+||+++. +++|+.+|+
T Consensus        22 p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~----~~~~~~~------~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~   90 (300)
T 2qc5_A           22 PYGITSSEDGKVWFTQHKANKISSLDQS-GRI----KEFEVPT------PDAKVMCLIVSSLGDIWFTENGANKIGKLSK   90 (300)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTT-SCE----EEEECSS------TTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             cceeeECCCCCEEEEcCCCCeEEEECCC-Cce----EEEECCC------CCCcceeEEECCCCCEEEEecCCCeEEEECC
Confidence            4467788999999998  4899999988 432    1121110      112345566678899999986 467999998


Q ss_pred             CCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcC-CCeEEEEeCCCCeEEEEEcCCCCCcceeeee
Q 006913          157 HGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT-QGELYSLSAHSPYFNWIQDLSSFDKAFTLTP  235 (626)
Q Consensus       157 ~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~-~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~  235 (626)
                      +|+......+            ..  .. ....+++++ +|+||+++. +++|+++|++ +++...........+..++.
T Consensus        91 ~g~~~~~~~~------------~~--~~-~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~  153 (300)
T 2qc5_A           91 KGGFTEYPLP------------QP--DS-GPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITL  153 (300)
T ss_dssp             TSCEEEEECS------------ST--TC-CEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEE
T ss_pred             CCCeEEecCC------------CC--CC-CCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEE
Confidence            8765322100            00  01 123466775 899999876 6789999998 56654322112234567888


Q ss_pred             ecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEEEEEcC-CeEEEEcCCCCEEEEeeccCCCC
Q 006913          236 GNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLD-GLLYSFSPSGVLNKFSKSDTSDS  314 (626)
Q Consensus       236 D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~~-gGLy~~d~~g~~~~~~~~~~~~~  314 (626)
                      |.+|+||+++..++.++.+|. +|++.. ............++++++|+||+++.. ++|++++++++...+...   . 
T Consensus       154 d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~---~-  227 (300)
T 2qc5_A          154 GSDNALWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDIP---T-  227 (300)
T ss_dssp             CTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECS---S-
T ss_pred             CCCCCEEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCcEEEEECC---C-
Confidence            999999999866678999997 777653 222211123456788889999999864 579999997776554321   1 


Q ss_pred             ccccCceEEEEEEecCCcEEEEEeeecCeeEEecccCCcceee
Q 006913          315 VIQSSPYWFHLLGPSIGLKAILCLMVVGQFSSLLSKSDLQHFV  357 (626)
Q Consensus       315 ~ilssp~V~~Il~DsdG~IwI~T~t~~Ggl~~~~~~~d~~~f~  357 (626)
                         ....+..|..|.+|+||+.+. ..+.+..+.....+..|.
T Consensus       228 ---~~~~~~~i~~d~~g~l~v~~~-~~~~i~~~~~~g~~~~~~  266 (300)
T 2qc5_A          228 ---PNARPHAITAGKNSEIWFTEW-GANQIGRITNDNTIQEYQ  266 (300)
T ss_dssp             ---TTCCEEEEEECSTTCEEEEET-TTTEEEEECTTSCEEEEE
T ss_pred             ---CCCCceEEEECCCCCEEEecc-CCCeEEEECCCCcEEEEE
Confidence               123356788999999997652 235665554444444443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.52  E-value=2.3e-11  Score=139.74  Aligned_cols=178  Identities=17%  Similarity=0.248  Sum_probs=114.6

Q ss_pred             eeeeeEEeeCCEEEEEe-CCcEEEEcC-CCCEEEEEeCCCC--------CC-cccCeEEecCCeEEEEE-CCeEEEEECC
Q 006913           38 RLSKPLIGEDGKIYACS-EKTLFAFES-NGTIAWSLDLDFT--------CN-IGTAPVHGGTGEVYIVA-ENRVLKVDLL  105 (626)
Q Consensus        38 ~~Sspvid~dG~IwIgS-dggL~a~d~-~G~~~W~~~~~~~--------~~-i~~sp~iD~dG~IwVgT-~ggL~~id~~  105 (626)
                      +.++|++ .+|.||+++ ++.|+++|. +|+.+|++.....        +. ....|.+ .++.||+++ ++.|+++|..
T Consensus        58 ~~~~P~v-~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~~dg~l~alD~~  135 (668)
T 1kv9_A           58 LEATPLF-HDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL-WGDKVYVGTLDGRLIALDAK  135 (668)
T ss_dssp             CCCCCEE-ETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE-EBTEEEEECTTSEEEEEETT
T ss_pred             cccCCEE-ECCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE-ECCEEEEEcCCCEEEEEECC
Confidence            5788998 789999998 567999998 9999999876421        00 1234565 468999998 8899999999


Q ss_pred             CCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcC------CeEEEEeC-CCcEEEEECCcccc--ccccc-
Q 006913          106 KIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKG------RALFAFMT-HGQLLWSAGPVLDQ--LGYRQ-  175 (626)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~------gGL~a~d~-~G~~~w~~~~~~~~--~~~~~-  175 (626)
                      +++     ..|.+.......  ...+...+...++.||+++.+      +.|+++|. +|+.+|.+......  ..... 
T Consensus       136 tG~-----~~W~~~~~~~~~--~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~  208 (668)
T 1kv9_A          136 TGK-----AIWSQQTTDPAK--PYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHP  208 (668)
T ss_dssp             TCC-----EEEEEECSCTTS--SCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSH
T ss_pred             CCC-----EeeeeccCCCCC--cceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccccc
Confidence            886     356543321100  111122223357899998653      67999997 59999986221000  00000 


Q ss_pred             ----ccccC-C-------CCCccccceEEEcCCCeEEEEcCCCe-------------------EEEEeCCCCeEEEEEcC
Q 006913          176 ----GCTKT-D-------VDCYFTSVPVIDQCEGSIYISNTQGE-------------------LYSLSAHSPYFNWIQDL  224 (626)
Q Consensus       176 ----~~~~~-l-------~~~~i~sspviD~~dG~LwIGT~~Gg-------------------L~~ld~~tg~~~w~~~~  224 (626)
                          ..... .       .+.....++.+|...+.||+++.++.                   |+++|+++|++.|.+..
T Consensus       209 ~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~  288 (668)
T 1kv9_A          209 ELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQV  288 (668)
T ss_dssp             HHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES
T ss_pred             ccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeec
Confidence                00000 0       01122345778754688999987653                   99999999999998754

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=99.52  E-value=2.6e-11  Score=137.17  Aligned_cols=220  Identities=13%  Similarity=0.141  Sum_probs=138.8

Q ss_pred             eeeeeEEeeCCEEEEEeC-CcEEEEcC-CCCEEEEEeCCCCCC-------cccCeEEecCCeEEEEE-CCeEEEEECCCC
Q 006913           38 RLSKPLIGEDGKIYACSE-KTLFAFES-NGTIAWSLDLDFTCN-------IGTAPVHGGTGEVYIVA-ENRVLKVDLLKI  107 (626)
Q Consensus        38 ~~Sspvid~dG~IwIgSd-ggL~a~d~-~G~~~W~~~~~~~~~-------i~~sp~iD~dG~IwVgT-~ggL~~id~~~~  107 (626)
                      ..++|++ .+|.||+++. ++|+++|. +|+.+|++.......       ....+.+ .++.||+++ ++.|+++|..++
T Consensus        60 ~~~~P~v-~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~-~~~~v~~~t~dg~l~AlD~~TG  137 (582)
T 1flg_A           60 QESQAIV-SDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI-YGDKVFFGTLDASVVALNKNTG  137 (582)
T ss_dssp             CCCCCEE-ETTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE-ETTEEEEEETTTEEEEEESSSC
T ss_pred             ceeccEE-ECCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE-ECCEEEEEeCCCEEEEEECCCC
Confidence            4588988 7899999985 77999998 999999987643210       1234555 468999998 789999999988


Q ss_pred             ccccceeEEEecCCCCCCCCCCeeEEEEEEcCC------eEEEEEc------CCeEEEEeC-CCcEEEEECCccccccc-
Q 006913          108 GTSESATQVFYGTGSGKGGTGAIAGIAVSTSSS------SVYINVK------GRALFAFMT-HGQLLWSAGPVLDQLGY-  173 (626)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG------~LwIgT~------~gGL~a~d~-~G~~~w~~~~~~~~~~~-  173 (626)
                      +     ..|.+........ ......++. .++      .||+++.      ++.|+++|+ +|+++|........... 
T Consensus       138 ~-----~~W~~~~~~~~~~-~~~~~sP~v-~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~  210 (582)
T 1flg_A          138 K-----VVWKKKFADHGAG-YTMTGAPTI-VKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRL  210 (582)
T ss_dssp             C-----EEEEEECSCGGGT-CBCCSCCEE-EECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEE
T ss_pred             C-----EEeeecCCCCCcC-cccccCCEE-eCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccc
Confidence            6     3565432211000 011112222 234      7888763      577999997 59999975210000000 


Q ss_pred             ---------ccc----------------cccCCCCCccccceEEEcCCCeEEEEcCC-----------------------
Q 006913          174 ---------RQG----------------CTKTDVDCYFTSVPVIDQCEGSIYISNTQ-----------------------  205 (626)
Q Consensus       174 ---------~~~----------------~~~~l~~~~i~sspviD~~dG~LwIGT~~-----------------------  205 (626)
                               ..+                +.. ..+.....++.+|...+.||+++.+                       
T Consensus       211 ~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~-~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~  289 (582)
T 1flg_A          211 NGKDSTVTGDVKAPSWPDDRNSPTGKVESWS-HGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLY  289 (582)
T ss_dssp             TTEEEEESSCTTCTTSCBCTTSTTSBCGGGG-GCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTT
T ss_pred             cCcccccccccccccCCCccccccccccccc-cCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcc
Confidence                     000                000 0011223567888657899998842                       


Q ss_pred             -CeEEEEeCCCCeEEEEEcCCCC-----Ccc-eeeeee---cCC----eEEEEEcCCCEEEEEECCCCcEEEEEecC
Q 006913          206 -GELYSLSAHSPYFNWIQDLSSF-----DKA-FTLTPG---NNG----YLYVTIPVRALVLALDTSSGNILWHKSVG  268 (626)
Q Consensus       206 -GgL~~ld~~tg~~~w~~~~~s~-----~~v-~sI~~D---~dG----~LwVGT~~gG~l~alD~~tG~~~w~~~~~  268 (626)
                       +.|+++|+++|+++|.+.....     +.. ..+..+   .+|    .+++++ ..|.++++|+.+|+++|.....
T Consensus       290 ~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~lw~~~~~  365 (582)
T 1flg_A          290 TSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHAD-RNGFFYVVDRSNGKLQNAFPFV  365 (582)
T ss_dssp             CSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEEC-TTSEEEEEETTTCCEEEEEESS
T ss_pred             cceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEEC-CCceEEEEECCCCCEecccccc
Confidence             5799999999999998754211     111 112223   356    355665 5689999999999999987543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.51  E-value=1.8e-11  Score=140.83  Aligned_cols=221  Identities=15%  Similarity=0.206  Sum_probs=141.5

Q ss_pred             eeeeeEEeeCCEEEEEe-CCcEEEEcC-CCCEEEEEeCCCCC---------CcccCeEEecCCeEEEEE-CCeEEEEECC
Q 006913           38 RLSKPLIGEDGKIYACS-EKTLFAFES-NGTIAWSLDLDFTC---------NIGTAPVHGGTGEVYIVA-ENRVLKVDLL  105 (626)
Q Consensus        38 ~~Sspvid~dG~IwIgS-dggL~a~d~-~G~~~W~~~~~~~~---------~i~~sp~iD~dG~IwVgT-~ggL~~id~~  105 (626)
                      +.++|++ .+|.||+++ ++.|+++|. +|+.+|++......         .....+.+ .++.||+++ ++.|+++|..
T Consensus        69 ~~~~P~v-~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~v~v~~~dg~l~alD~~  146 (677)
T 1kb0_A           69 VEATPVV-VDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL-WKGKVYVGAWDGRLIALDAA  146 (677)
T ss_dssp             CCCCCEE-ETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE-ETTEEEEECTTSEEEEEETT
T ss_pred             ceeCCEE-ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE-ECCEEEEEcCCCEEEEEECC
Confidence            6789998 789999998 577999998 99999998764310         11234555 468999998 7899999999


Q ss_pred             CCccccceeEEEecCC-CCCCCCCCeeEEEEEEcCCeEEEEEc------CCeEEEEeC-CCcEEEEECCccccc--ccc-
Q 006913          106 KIGTSESATQVFYGTG-SGKGGTGAIAGIAVSTSSSSVYINVK------GRALFAFMT-HGQLLWSAGPVLDQL--GYR-  174 (626)
Q Consensus       106 ~~~~~~~~~~~~~~~~-~~~~~~~~~I~s~~~d~dG~LwIgT~------~gGL~a~d~-~G~~~w~~~~~~~~~--~~~-  174 (626)
                      +++     ..|.+... ...  ....+...+...++.||+++.      ++.|+++|. +|+++|.+.......  ... 
T Consensus       147 tG~-----~~W~~~~~~~~~--~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~  219 (677)
T 1kb0_A          147 TGK-----EVWHQNTFEGQK--GSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFED  219 (677)
T ss_dssp             TCC-----EEEEEETTTTCC--SSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSS
T ss_pred             CCC-----EEeeecCCcCcC--cCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccc
Confidence            886     35655432 100  011222233345789999875      467999997 599999862210000  000 


Q ss_pred             ----ccc---c--cC----CCCCccccceEEEcCCCeEEEEcCCC-------------------eEEEEeCCCCeEEEEE
Q 006913          175 ----QGC---T--KT----DVDCYFTSVPVIDQCEGSIYISNTQG-------------------ELYSLSAHSPYFNWIQ  222 (626)
Q Consensus       175 ----~~~---~--~~----l~~~~i~sspviD~~dG~LwIGT~~G-------------------gL~~ld~~tg~~~w~~  222 (626)
                          .+.   .  ..    ..+......+.+|...+.||+++.++                   .|+++|+++|++.|.+
T Consensus       220 ~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~  299 (677)
T 1kb0_A          220 ESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHY  299 (677)
T ss_dssp             HHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEE
T ss_pred             cccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEE
Confidence                000   0  00    00111224567776578899998764                   3999999999999987


Q ss_pred             cCCCC-----Cccee-eeee--cCC----eEEEEEcCCCEEEEEECCCCcEEEEEecC
Q 006913          223 DLSSF-----DKAFT-LTPG--NNG----YLYVTIPVRALVLALDTSSGNILWHKSVG  268 (626)
Q Consensus       223 ~~~s~-----~~v~s-I~~D--~dG----~LwVGT~~gG~l~alD~~tG~~~w~~~~~  268 (626)
                      .....     +.... +..+  .+|    .|++++ ..|.++++|+.+|+++|.....
T Consensus       300 ~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~-~~G~l~~lD~~tG~~l~~~~~~  356 (677)
T 1kb0_A          300 QETPGDNWDYTSTQPMILADIKIAGKPRKVILHAP-KNGFFFVLDRTNGKFISAKNFV  356 (677)
T ss_dssp             ESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECC-TTSEEEEEETTTCCEEEEEESS
T ss_pred             ecCCCcccccccCCCcEEEecccCCcEeeEEEEEC-CCCEEEEEECCCCCEecccccc
Confidence            64311     11111 1122  255    366665 5689999999999999987543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.49  E-value=4.9e-11  Score=137.30  Aligned_cols=275  Identities=15%  Similarity=0.184  Sum_probs=176.9

Q ss_pred             eeeeEEeeCCEEEEEe-CCcEEEEcC-CCCEEEEEeCC-CC---CCcccCeEEecCCeEEEEE-------CCeEEEEECC
Q 006913           39 LSKPLIGEDGKIYACS-EKTLFAFES-NGTIAWSLDLD-FT---CNIGTAPVHGGTGEVYIVA-------ENRVLKVDLL  105 (626)
Q Consensus        39 ~Sspvid~dG~IwIgS-dggL~a~d~-~G~~~W~~~~~-~~---~~i~~sp~iD~dG~IwVgT-------~ggL~~id~~  105 (626)
                      ..+|.+ .++.||+++ ++.|+++|. +|+.+|++... ..   .....+|+++ ++.||+++       ++.|+++|..
T Consensus       121 ~~~~a~-~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~-~~~v~v~~~~~~~~~~g~v~a~D~~  198 (677)
T 1kb0_A          121 NRGVAL-WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF-KGKVIIGNGGAEYGVRGYITAYDAE  198 (677)
T ss_dssp             CCCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETT
T ss_pred             CCCceE-ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEE-CCEEEEEecccccCCCCEEEEEECC
Confidence            345666 678999998 678999998 99999998765 21   1244567774 58899986       3679999999


Q ss_pred             CCccccceeEEEecCCCCCC--------------------------CCCCeeEEEEEE-cCCeEEEEEcCC---------
Q 006913          106 KIGTSESATQVFYGTGSGKG--------------------------GTGAIAGIAVST-SSSSVYINVKGR---------  149 (626)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~I~s~~~d-~dG~LwIgT~~g---------  149 (626)
                      +++.     .|.+.......                          ........+..+ ..+.||+++.++         
T Consensus       199 tG~~-----~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~  273 (677)
T 1kb0_A          199 TGER-----KWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRS  273 (677)
T ss_dssp             TCCE-----EEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHS
T ss_pred             CCcE-----EEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCC
Confidence            8863     55543321110                          000111223334 467899987643         


Q ss_pred             ----------eEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEE-Ec-CC----CeEEEEcCCCeEEEEe
Q 006913          150 ----------ALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVI-DQ-CE----GSIYISNTQGELYSLS  212 (626)
Q Consensus       150 ----------GL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspvi-D~-~d----G~LwIGT~~GgL~~ld  212 (626)
                                .|+++|++ |+.+|.+....          +..-+......|++ +. .+    +.|++++.+|.|+++|
T Consensus       274 ~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~----------~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD  343 (677)
T 1kb0_A          274 PKGGDNLYLASIVALDPDTGKYKWHYQETP----------GDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLD  343 (677)
T ss_dssp             TTCCCCTTTTEEEEECTTTCCEEEEEESST----------TCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEE
T ss_pred             ccCCCCeeeEEEEEEECCCCCEEEEEecCC----------CcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEE
Confidence                      39999985 99999862100          00000011233433 20 02    4588898999999999


Q ss_pred             CCCCeEEEEEcCCCCC----------------------------------cceeeeeec-CCeEEEEEcC----------
Q 006913          213 AHSPYFNWIQDLSSFD----------------------------------KAFTLTPGN-NGYLYVTIPV----------  247 (626)
Q Consensus       213 ~~tg~~~w~~~~~s~~----------------------------------~v~sI~~D~-dG~LwVGT~~----------  247 (626)
                      .++|++.|........                                  .-..++.|. .|.+|+++..          
T Consensus       344 ~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~  423 (677)
T 1kb0_A          344 RTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKK  423 (677)
T ss_dssp             TTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTT
T ss_pred             CCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccc
Confidence            9999999976532100                                  001234554 4688887531          


Q ss_pred             --------------------------------CCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEEEEEcCCeEE
Q 006913          248 --------------------------------RALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLY  295 (626)
Q Consensus       248 --------------------------------gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy  295 (626)
                                                      .+.+.++|..||+++|+...+.  .....++...++.+|+|+.++.|+
T Consensus       424 ~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~--~~~~g~~~~~g~~v~~g~~dg~l~  501 (677)
T 1kb0_A          424 WEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS--PWNGGTLTTAGNVVFQGTADGRLV  501 (677)
T ss_dssp             CCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESS--SCCCCEEEETTTEEEEECTTSEEE
T ss_pred             cccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCC--CCcCcceEeCCCEEEEECCCCcEE
Confidence                                            1679999999999999986652  122334444578999999999999


Q ss_pred             EEcC-CCCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEEee
Q 006913          296 SFSP-SGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLM  339 (626)
Q Consensus       296 ~~d~-~g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~t  339 (626)
                      ++|. +|+.+|.....  .. +...|.++    ..+|..|+.+..
T Consensus       502 a~D~~tG~~lw~~~~~--~~-~~~~p~~y----~~~G~~~v~~~~  539 (677)
T 1kb0_A          502 AYHAATGEKLWEAPTG--TG-VVAAPSTY----MVDGRQYVSVAV  539 (677)
T ss_dssp             EEETTTCCEEEEEECS--SC-CCSCCEEE----EETTEEEEEEEE
T ss_pred             EEECCCCceeeeeeCC--CC-cccCCEEE----EeCCEEEEEEec
Confidence            9997 59999976632  11 34455432    357888877654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.42  E-value=3.2e-10  Score=114.10  Aligned_cols=233  Identities=10%  Similarity=0.100  Sum_probs=152.1

Q ss_pred             eeeeEEeeCCEEEEEe--CCcEEEEcCCCCEEEEEeCCCC----CCcccCeEE-ecCCeEEEEE---CCeEEEEECCCCc
Q 006913           39 LSKPLIGEDGKIYACS--EKTLFAFESNGTIAWSLDLDFT----CNIGTAPVH-GGTGEVYIVA---ENRVLKVDLLKIG  108 (626)
Q Consensus        39 ~Sspvid~dG~IwIgS--dggL~a~d~~G~~~W~~~~~~~----~~i~~sp~i-D~dG~IwVgT---~ggL~~id~~~~~  108 (626)
                      ....+++.+|.||++.  ++.|..+|.+|...+.+.....    ......+.+ +.+|++|++.   ++.|.++++++. 
T Consensus        32 p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~-  110 (286)
T 1q7f_A           32 PSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQ-  110 (286)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSC-
T ss_pred             CceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCCc-
Confidence            4556677889999985  5689999988887765543110    012334556 4789999997   578999996543 


Q ss_pred             cccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEc-CCeEEEEeCCCcEEEEECCcccccccccccccCCCCCccc
Q 006913          109 TSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVK-GRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFT  187 (626)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~-~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~  187 (626)
                           ....+...     .......+..+.+|+||++.. ++.|+.++++|+....+..       .    ..   ....
T Consensus       111 -----~~~~~~~~-----~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~-------~----~~---~~~p  166 (286)
T 1q7f_A          111 -----FVRKFGAT-----ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGC-------S----KH---LEFP  166 (286)
T ss_dssp             -----EEEEECTT-----TCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEEC-------T----TT---CSSE
T ss_pred             -----EEEEecCc-----cCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCC-------C----Cc---cCCc
Confidence                 12222211     112334556678899999865 4679999988877665411       0    00   0112


Q ss_pred             cceEEEcCCCeEEEEcC-CCeEEEEeCCCCeEEEEEcCCC-CCcceeeeeecCCeEEEEEcCCC-EEEEEECCCCcEEEE
Q 006913          188 SVPVIDQCEGSIYISNT-QGELYSLSAHSPYFNWIQDLSS-FDKAFTLTPGNNGYLYVTIPVRA-LVLALDTSSGNILWH  264 (626)
Q Consensus       188 sspviD~~dG~LwIGT~-~GgL~~ld~~tg~~~w~~~~~s-~~~v~sI~~D~dG~LwVGT~~gG-~l~alD~~tG~~~w~  264 (626)
                      ..+++++ +|+||++.. ++.|+.+|+++. ......... ...+..++.|.+|+|||++..++ .+..+|+ +|+.+..
T Consensus       167 ~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~-~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~  243 (286)
T 1q7f_A          167 NGVVVND-KQEIFISDNRAHCVKVFNYEGQ-YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISA  243 (286)
T ss_dssp             EEEEECS-SSEEEEEEGGGTEEEEEETTCC-EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEE
T ss_pred             EEEEECC-CCCEEEEECCCCEEEEEcCCCC-EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEE
Confidence            4467786 899999864 678999998764 433332221 23456788999999999986554 8999984 6776655


Q ss_pred             EecCCCCCceeeEEEeeCCeEEEEEcCCeEEEEcC
Q 006913          265 KSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSP  299 (626)
Q Consensus       265 ~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~  299 (626)
                      ............++++++|++|++..++.|..|+.
T Consensus       244 ~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~  278 (286)
T 1q7f_A          244 LESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRY  278 (286)
T ss_dssp             EEESSCCSCEEEEEEETTTEEEEEETTTEEEEEEC
T ss_pred             EcccCCCCcceeEEECCCCcEEEECCCCeEEEEEc
Confidence            53331111244678888999999987777777753

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.41  E-value=3.8e-10  Score=113.57  Aligned_cols=226  Identities=11%  Similarity=0.098  Sum_probs=146.0

Q ss_pred             cCeEEecCCeEEEEE--CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEE-EcCCeEEEEEc--CCeEEEEe
Q 006913           81 TAPVHGGTGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVS-TSSSSVYINVK--GRALFAFM  155 (626)
Q Consensus        81 ~sp~iD~dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~-d~dG~LwIgT~--~gGL~a~d  155 (626)
                      .++.++.+|++|++.  ++.|.++++++.      ....+...............+.. +.+|+||++..  ++.|..++
T Consensus        33 ~~v~~~~~g~l~v~~~~~~~i~~~d~~g~------~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d  106 (286)
T 1q7f_A           33 SGVAVNAQNDIIVADTNNHRIQIFDKEGR------FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN  106 (286)
T ss_dssp             EEEEECTTCCEEEEEGGGTEEEEECTTSC------EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred             ceEEECCCCCEEEEECCCCEEEEECCCCc------EEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence            356678889999986  688999998753      12222211100000112233344 57899999984  68899999


Q ss_pred             CCCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcC-CCeEEEEeCCCCeEEEEEcC-CCCCcceee
Q 006913          156 THGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT-QGELYSLSAHSPYFNWIQDL-SSFDKAFTL  233 (626)
Q Consensus       156 ~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~-~GgL~~ld~~tg~~~w~~~~-~s~~~v~sI  233 (626)
                      ++|+....+..     .       .   ......+.+++ +|+||++.. ++.|+++++++ +..+.... .....+..+
T Consensus       107 ~~g~~~~~~~~-----~-------~---~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~p~~i  169 (286)
T 1q7f_A          107 QYGQFVRKFGA-----T-------I---LQHPRGVTVDN-KGRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGV  169 (286)
T ss_dssp             TTSCEEEEECT-----T-------T---CSCEEEEEECT-TSCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEE
T ss_pred             CCCcEEEEecC-----c-------c---CCCceEEEEeC-CCCEEEEECCCCEEEEEcCCC-CEEEEeCCCCccCCcEEE
Confidence            88887665411     0       0   00123466776 889999864 57899999876 44443322 223346678


Q ss_pred             eeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEEEEEcCC--eEEEEcCCCCEEEEeeccC
Q 006913          234 TPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDG--LLYSFSPSGVLNKFSKSDT  311 (626)
Q Consensus       234 ~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~~g--GLy~~d~~g~~~~~~~~~~  311 (626)
                      +.+.+|+||++....+.+..+|. +|+................+++|++|+||+++..+  .|.+|+++++........ 
T Consensus       170 ~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~-  247 (286)
T 1q7f_A          170 VVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESK-  247 (286)
T ss_dssp             EECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEES-
T ss_pred             EECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEccc-
Confidence            89999999999865678999996 56666554322101234568889999999998643  899999988766544311 


Q ss_pred             CCCccccCceEEEEEEecCCcEEEE
Q 006913          312 SDSVIQSSPYWFHLLGPSIGLKAIL  336 (626)
Q Consensus       312 ~~~~ilssp~V~~Il~DsdG~IwI~  336 (626)
                           ...+....+..+.+|++|+.
T Consensus       248 -----~~~~~~~~i~~~~~g~l~vs  267 (286)
T 1q7f_A          248 -----VKHAQCFDVALMDDGSVVLA  267 (286)
T ss_dssp             -----SCCSCEEEEEEETTTEEEEE
T ss_pred             -----CCCCcceeEEECCCCcEEEE
Confidence                 11223457888899999865

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.38  E-value=1.7e-10  Score=116.95  Aligned_cols=235  Identities=10%  Similarity=0.084  Sum_probs=148.1

Q ss_pred             ceeeeeEEeeCCEEEEE--------e-CCcEEEEcC-CCCEEEEEeCC---CCCCcccCeEEecC-CeEEEEE-CCeEEE
Q 006913           37 FRLSKPLIGEDGKIYAC--------S-EKTLFAFES-NGTIAWSLDLD---FTCNIGTAPVHGGT-GEVYIVA-ENRVLK  101 (626)
Q Consensus        37 ~~~Sspvid~dG~IwIg--------S-dggL~a~d~-~G~~~W~~~~~---~~~~i~~sp~iD~d-G~IwVgT-~ggL~~  101 (626)
                      .....++.+.+|.||++        + +++|++++. +|++.. +..+   ........+.++.+ |++|+++ .++|++
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~   96 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-ICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLV   96 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEE-EECCEETTEECCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE-EEecccCCCCCCCceEEEecCCCcEEEEECCCCEEE
Confidence            34467888889999998        4 568999996 777642 2221   00112345677888 9999998 579999


Q ss_pred             EECCCCccccceeEEE-ecCCCCCCCCCCeeEEEEEEcCCeEEEEEcC----------------CeEEEEeCCCcEEEEE
Q 006913          102 VDLLKIGTSESATQVF-YGTGSGKGGTGAIAGIAVSTSSSSVYINVKG----------------RALFAFMTHGQLLWSA  164 (626)
Q Consensus       102 id~~~~~~~~~~~~~~-~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~----------------gGL~a~d~~G~~~w~~  164 (626)
                      ++++ +..     ... ....  .......+..+..+.+|+||+++..                ++|++++++|+.....
T Consensus        97 ~d~~-g~~-----~~~~~~~~--~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~  168 (314)
T 1pjx_A           97 VQTD-GTF-----EEIAKKDS--EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVD  168 (314)
T ss_dssp             EETT-SCE-----EECCSBCT--TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEE
T ss_pred             EeCC-CCE-----EEEEeccC--CCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCEEEec
Confidence            9988 531     211 1110  0111123445667889999999864                4799999877654321


Q ss_pred             CCcccccccccccccCCCCCccccceEEE----cCCC-eEEEEc-CCCeEEEEeCC-CCeEEEE---EcCCC-C-Cccee
Q 006913          165 GPVLDQLGYRQGCTKTDVDCYFTSVPVID----QCEG-SIYISN-TQGELYSLSAH-SPYFNWI---QDLSS-F-DKAFT  232 (626)
Q Consensus       165 ~~~~~~~~~~~~~~~~l~~~~i~sspviD----~~dG-~LwIGT-~~GgL~~ld~~-tg~~~w~---~~~~s-~-~~v~s  232 (626)
                      .    ...             ....++++    + ++ .||++. .+++|++++.+ ++.+...   ..... . ..+..
T Consensus       169 ~----~~~-------------~~~~i~~~~~~d~-dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~  230 (314)
T 1pjx_A          169 T----AFQ-------------FPNGIAVRHMNDG-RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADG  230 (314)
T ss_dssp             E----EES-------------SEEEEEEEECTTS-CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEE
T ss_pred             c----CCC-------------CcceEEEecccCC-CCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCc
Confidence            0    000             01223445    5 55 689885 46789999875 4443211   12211 1 33556


Q ss_pred             eeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCe-EEEEEc-CCeEEEEcCC
Q 006913          233 LTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGW-ISVGSL-DGLLYSFSPS  300 (626)
Q Consensus       233 I~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~-IWVGT~-~gGLy~~d~~  300 (626)
                      ++.|.+|+||+++..++.+..+|+.+|+........  ......+.++++|. ||+++. +++|++++.+
T Consensus       231 i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~--~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~  298 (314)
T 1pjx_A          231 MDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCP--FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECS--SSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             eEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCC--CCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence            788999999999865678999998777765444333  12345677787887 999985 3689999864

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.32  E-value=2.6e-10  Score=113.30  Aligned_cols=229  Identities=14%  Similarity=0.108  Sum_probs=141.6

Q ss_pred             cCeEEecCCeEEE-EE--CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC
Q 006913           81 TAPVHGGTGEVYI-VA--ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH  157 (626)
Q Consensus        81 ~sp~iD~dG~IwV-gT--~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~  157 (626)
                      .++.+|.+|++|+ +.  +++|+++++.+..      ...+...     .......+..+.+|+||++..+++|+.++++
T Consensus        27 ~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~------~~~~~~~-----~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~   95 (270)
T 1rwi_B           27 SGVAVDSAGNVYVTSEGMYGRVVKLATGSTG------TTVLPFN-----GLYQPQGLAVDGAGTVYVTDFNNRVVTLAAG   95 (270)
T ss_dssp             EEEEECTTCCEEEEECSSSCEEEEECC-----------EECCCC-----SCCSCCCEEECTTCCEEEEETTTEEEEECTT
T ss_pred             cceEECCCCCEEEEccCCCCcEEEecCCCcc------cceEeeC-----CcCCcceeEECCCCCEEEEcCCCEEEEEeCC
Confidence            3567788999999 73  5889999876642      1111110     0112233456778899999877789999987


Q ss_pred             CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcC-CCeEEEEeCCCCeEEEEEcCCCCCcceeeeee
Q 006913          158 GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT-QGELYSLSAHSPYFNWIQDLSSFDKAFTLTPG  236 (626)
Q Consensus       158 G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~-~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D  236 (626)
                      +........     .       ..   .....+++++ +|+||++.. ++.|++++..+...... .......+..++.+
T Consensus        96 ~~~~~~~~~-----~-------~~---~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~-~~~~~~~p~~i~~~  158 (270)
T 1rwi_B           96 SNNQTVLPF-----D-------GL---NYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVL-PFTGLNDPDGVAVD  158 (270)
T ss_dssp             CSCCEECCC-----C-------SC---SSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSCEEC-CCCSCCSCCCEEEC
T ss_pred             CceEeeeec-----C-------Cc---CCCcceEECC-CCCEEEEECCCCEEEEEECCCceeEee-ccccCCCceeEEEe
Confidence            654443200     0       00   0123467776 889999864 56899997766443322 11122345567888


Q ss_pred             cCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEEEEEc-CCeEEEEcCCCCEEEEeeccCCCCc
Q 006913          237 NNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSL-DGLLYSFSPSGVLNKFSKSDTSDSV  315 (626)
Q Consensus       237 ~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~-~gGLy~~d~~g~~~~~~~~~~~~~~  315 (626)
                      .+|+||+++..++.++.+|..++.... .....+ .....+++|++|+||+++. ++.|+++++++.......   ... 
T Consensus       159 ~~g~l~v~~~~~~~i~~~~~~~~~~~~-~~~~~~-~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~---~~~-  232 (270)
T 1rwi_B          159 NSGNVYVTDTDNNRVVKLEAESNNQVV-LPFTDI-TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLP---FTG-  232 (270)
T ss_dssp             TTCCEEEEEGGGTEEEEECTTTCCEEE-CCCSSC-CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECC---CCS-
T ss_pred             CCCCEEEEECCCCEEEEEecCCCceEe-ecccCC-CCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeec---cCC-
Confidence            899999998666789999976655432 211211 2345678898999999986 568999998765433321   111 


Q ss_pred             cccCceEEEEEEecCCcEEEEEeeecCeeEEe
Q 006913          316 IQSSPYWFHLLGPSIGLKAILCLMVVGQFSSL  347 (626)
Q Consensus       316 ilssp~V~~Il~DsdG~IwI~T~t~~Ggl~~~  347 (626)
                         ...+..|..+.+|+||+.. ...+.+..+
T Consensus       233 ---~~~p~~i~~~~~g~l~v~~-~~~~~v~~~  260 (270)
T 1rwi_B          233 ---LNTPLAVAVDSDRTVYVAD-RGNDRVVKL  260 (270)
T ss_dssp             ---CSCEEEEEECTTCCEEEEE-GGGTEEEEE
T ss_pred             ---CCCceeEEECCCCCEEEEE-CCCCEEEEE
Confidence               1345678889999998643 334555443

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.30  E-value=6.7e-10  Score=112.59  Aligned_cols=236  Identities=14%  Similarity=0.115  Sum_probs=142.6

Q ss_pred             ccCeEEecCCeEEEE--------E-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcC-CeEEEEEcCC
Q 006913           80 GTAPVHGGTGEVYIV--------A-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSS-SSVYINVKGR  149 (626)
Q Consensus        80 ~~sp~iD~dG~IwVg--------T-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~d-G~LwIgT~~g  149 (626)
                      ..++..|.+|++|++        + +++|+++++.++..    ..+....   .......+..+..+.+ |+||+++..+
T Consensus        20 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~----~~~~~~~---~~~~~~~~~~i~~~~~~g~l~v~~~~~   92 (314)
T 1pjx_A           20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK----TVICKPE---VNGYGGIPAGCQCDRDANQLFVADMRL   92 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE----EEEECCE---ETTEECCEEEEEECSSSSEEEEEETTT
T ss_pred             ccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE----EEEEecc---cCCCCCCCceEEEecCCCcEEEEECCC
Confidence            346777889999998        4 68899999776642    1111100   0000122344556777 9999999878


Q ss_pred             eEEEEeCCCcEEEE-ECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCC----------------CeEEEEe
Q 006913          150 ALFAFMTHGQLLWS-AGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQ----------------GELYSLS  212 (626)
Q Consensus       150 GL~a~d~~G~~~w~-~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~----------------GgL~~ld  212 (626)
                      +|+.+|++|+.... ...       .    .... ......+++|+ +|+||+++..                ++|++++
T Consensus        93 ~l~~~d~~g~~~~~~~~~-------~----~~~~-~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~  159 (314)
T 1pjx_A           93 GLLVVQTDGTFEEIAKKD-------S----EGRR-MQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFT  159 (314)
T ss_dssp             EEEEEETTSCEEECCSBC-------T----TSCB-CBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEEC
T ss_pred             CEEEEeCCCCEEEEEecc-------C----CCcc-ccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEEC
Confidence            99999987765432 100       0    0000 01124467786 8999999863                5899999


Q ss_pred             CCCCeEEEEEcCCCCCcceeeeee----cCC-eEEEEEcCCCEEEEEECC-CCcEEEE---EecCCCC-CceeeEEEeeC
Q 006913          213 AHSPYFNWIQDLSSFDKAFTLTPG----NNG-YLYVTIPVRALVLALDTS-SGNILWH---KSVGPLG-SAEYAPVVDSN  282 (626)
Q Consensus       213 ~~tg~~~w~~~~~s~~~v~sI~~D----~dG-~LwVGT~~gG~l~alD~~-tG~~~w~---~~~~~l~-~~~sspvvD~d  282 (626)
                      ++ +++......  ......++.+    .+| .||++....+.++.+|.. +|.....   ....... .....+++|++
T Consensus       160 ~~-g~~~~~~~~--~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~  236 (314)
T 1pjx_A          160 TD-GQMIQVDTA--FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDED  236 (314)
T ss_dssp             TT-SCEEEEEEE--ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTT
T ss_pred             CC-CCEEEeccC--CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCC
Confidence            87 565443221  1122345555    788 699987556788888754 4543211   1111111 23456788999


Q ss_pred             CeEEEEEc-CCeEEEEcCC-CCEEEEeeccCCCCccccCceEEEEEEecCCc-EEEEEeeecCeeEEe
Q 006913          283 GWISVGSL-DGLLYSFSPS-GVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGL-KAILCLMVVGQFSSL  347 (626)
Q Consensus       283 G~IWVGT~-~gGLy~~d~~-g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~-IwI~T~t~~Ggl~~~  347 (626)
                      |++|+++. +++|++++++ ++......        .+...+.++..+.+|+ ||+.+.. .+++..+
T Consensus       237 G~l~v~~~~~~~i~~~d~~~g~~~~~~~--------~~~~~~~~i~~~~dg~~l~v~~~~-~~~l~~~  295 (314)
T 1pjx_A          237 NNLLVANWGSSHIEVFGPDGGQPKMRIR--------CPFEKPSNLHFKPQTKTIFVTEHE-NNAVWKF  295 (314)
T ss_dssp             CCEEEEEETTTEEEEECTTCBSCSEEEE--------CSSSCEEEEEECTTSSEEEEEETT-TTEEEEE
T ss_pred             CCEEEEEcCCCEEEEEcCCCCcEeEEEe--------CCCCCceeEEECCCCCEEEEEeCC-CCeEEEE
Confidence            99999974 6789999987 66443322        1223456777788898 8865532 3455443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.27  E-value=3.9e-12  Score=135.45  Aligned_cols=229  Identities=14%  Similarity=0.186  Sum_probs=129.1

Q ss_pred             eeeeEEeeCCEEEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEE-E-CCeEEEEECCCCcccccee
Q 006913           39 LSKPLIGEDGKIYACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIV-A-ENRVLKVDLLKIGTSESAT  114 (626)
Q Consensus        39 ~Sspvid~dG~IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVg-T-~ggL~~id~~~~~~~~~~~  114 (626)
                      .++|++ .++.||+++ ++.|+++|. +|+.+|.+.. .  .+..+|+.+ +|.++++ + ++.|+++|..+++.     
T Consensus         2 ~ssP~v-~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~--~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~-----   71 (369)
T 2hz6_A            2 SSTVTL-PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-D--PVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEG-----   71 (369)
T ss_dssp             -------CTTEEEEEETTSEEEEEETTTCCEEEEEEC-C--CSCCCC------CCEEECTTTCCEEEC-----CC-----
T ss_pred             CCCCee-eCCEEEEEcCCCEEEEEECCCCCEEEEecC-C--CceecceEc-CCCEEEEeCCCCEEEEEECCCCce-----
Confidence            478888 678999998 678999997 9999999876 2  345566663 4666766 4 78999999977642     


Q ss_pred             EEEecCCCCCCCCCCee-EEEEEEcCCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEE
Q 006913          115 QVFYGTGSGKGGTGAIA-GIAVSTSSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVI  192 (626)
Q Consensus       115 ~~~~~~~~~~~~~~~~I-~s~~~d~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspvi  192 (626)
                      .|.+....     ...+ ..++...++.||+++.++.|+++|+. |+.+|.+..     +      .     ....+|  
T Consensus        72 ~w~~~~~~-----~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~-----~------~-----~~~~~p--  128 (369)
T 2hz6_A           72 LTKLPFTI-----PELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSS-----A------F-----ADSLSP--  128 (369)
T ss_dssp             SEECSCCH-----HHHHTTCSCC-----CCCCEEEEEEEEECCC------------------------------------
T ss_pred             eeeeeccC-----ccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecC-----C------C-----cccccc--
Confidence            34332110     0011 11122246789998888889999985 999997511     0      0     011223  


Q ss_pred             EcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeec----CCeEEEEEcCCCEEEEEECCCCcEEEEEecC
Q 006913          193 DQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGN----NGYLYVTIPVRALVLALDTSSGNILWHKSVG  268 (626)
Q Consensus       193 D~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~----dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~  268 (626)
                      +  ++.||+++.++.|+++|.++|+..|.......   ..+..+.    ++.+|+++. ++.++++|..+|+.+|.....
T Consensus       129 ~--~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~---~~~~~~~~~~~~~~v~~~~~-dg~v~a~d~~tG~~~W~~~~~  202 (369)
T 2hz6_A          129 S--TSLLYLGRTEYTITMYDTKTRELRWNATYFDY---AASLPEDDVDYKMSHFVSNG-DGLVVTVDSESGDVLWIQNYA  202 (369)
T ss_dssp             ------EEEEEEEEEEECCCSSSSSCCCEEEEEEE---CCBCCCCCTTCCCCEEEEET-SCEEEEECTTTCCEEEEEECS
T ss_pred             c--CCEEEEEecCCEEEEEECCCCCEEEeEecccc---cCccccCCccccceEEEECC-CCEEEEEECCCCcEEEEecCC
Confidence            3  78999999889999999999999998643211   1122222    378999885 579999999999999988755


Q ss_pred             CCCCceeeEEEeeCCeEEEEE---cCCeEEEEcC-CCC----EEEEee
Q 006913          269 PLGSAEYAPVVDSNGWISVGS---LDGLLYSFSP-SGV----LNKFSK  308 (626)
Q Consensus       269 ~l~~~~sspvvD~dG~IWVGT---~~gGLy~~d~-~g~----~~~~~~  308 (626)
                      .  .....++...+|.+|+..   .++.++++|. +|+    ..|...
T Consensus       203 ~--pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~~tG~~~~~~~W~~~  248 (369)
T 2hz6_A          203 S--PVVAFYVWQREGLRKVMHINVAVETLRYLTFMSGEVGRITKWKYP  248 (369)
T ss_dssp             S--CEEEEEECTTSSCEEECCEEEEHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred             C--ceEEEEEecCCceEeccceeecccceeeeehhcCCcccceeeeec
Confidence            2  233445555677776432   1346788886 477    777544

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.27  E-value=1.4e-09  Score=107.82  Aligned_cols=231  Identities=15%  Similarity=0.142  Sum_probs=143.9

Q ss_pred             eeeeeEEeeCCEEEE-Ee--CCcEEEEcCCCCEEEEEeCCCCCCcccCeEEecCCeEEEEE-CCeEEEEECCCCccccce
Q 006913           38 RLSKPLIGEDGKIYA-CS--EKTLFAFESNGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSESA  113 (626)
Q Consensus        38 ~~Sspvid~dG~IwI-gS--dggL~a~d~~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~  113 (626)
                      .-..++++.+|+||+ +.  +++|++++..+...+...... ......+.+|.+|++|++. +++|+++++.+...    
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~----   99 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNG-LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ----   99 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCS-CCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC----
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCC-cCCcceeEECCCCCEEEEcCCCEEEEEeCCCceE----
Confidence            445667778999999 63  568999997443332222211 1234567888899999998 78999999877521    


Q ss_pred             eEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEc-CCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceE
Q 006913          114 TQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVK-GRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPV  191 (626)
Q Consensus       114 ~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~-~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspv  191 (626)
                        ..+..     ........+..+.+|+||++.. ++.|+.++.. .......         ..    .   ......++
T Consensus       100 --~~~~~-----~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~---------~~----~---~~~p~~i~  156 (270)
T 1rwi_B          100 --TVLPF-----DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP---------FT----G---LNDPDGVA  156 (270)
T ss_dssp             --EECCC-----CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC---------CC----S---CCSCCCEE
T ss_pred             --eeeec-----CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeec---------cc----c---CCCceeEE
Confidence              11111     0112334556677899999864 4678899764 3222110         00    0   00123467


Q ss_pred             EEcCCCeEEEEcC-CCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCC
Q 006913          192 IDQCEGSIYISNT-QGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPL  270 (626)
Q Consensus       192 iD~~dG~LwIGT~-~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l  270 (626)
                      +++ +|+||+++. ++.|+.++.+++..... .......+..++.|.+|+||+++..++.+..+++.+... .......+
T Consensus       157 ~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~-~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~-~~~~~~~~  233 (270)
T 1rwi_B          157 VDN-SGNVYVTDTDNNRVVKLEAESNNQVVL-PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVLPFTGL  233 (270)
T ss_dssp             ECT-TCCEEEEEGGGTEEEEECTTTCCEEEC-CCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC-EECCCCSC
T ss_pred             EeC-CCCEEEEECCCCEEEEEecCCCceEee-cccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc-eeeccCCC
Confidence            785 789999875 56899999988654332 211223456788999999999987667888898754432 22222211


Q ss_pred             CCceeeEEEeeCCeEEEEEc-CCeEEEEcCC
Q 006913          271 GSAEYAPVVDSNGWISVGSL-DGLLYSFSPS  300 (626)
Q Consensus       271 ~~~~sspvvD~dG~IWVGT~-~gGLy~~d~~  300 (626)
                       .....++++++|+||++.. ++.|..|+..
T Consensus       234 -~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~  263 (270)
T 1rwi_B          234 -NTPLAVAVDSDRTVYVADRGNDRVVKLTSL  263 (270)
T ss_dssp             -SCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             -CCceeEEECCCCCEEEEECCCCEEEEEcCC
Confidence             2345678888999999975 4577777653

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.27  E-value=3.2e-09  Score=120.46  Aligned_cols=245  Identities=13%  Similarity=0.100  Sum_probs=147.7

Q ss_pred             ceeeeeEEeeCCEEEEEe-------CCcEEEEcC-CCCEEEEEeCCCCC-------------------------------
Q 006913           37 FRLSKPLIGEDGKIYACS-------EKTLFAFES-NGTIAWSLDLDFTC-------------------------------   77 (626)
Q Consensus        37 ~~~Sspvid~dG~IwIgS-------dggL~a~d~-~G~~~W~~~~~~~~-------------------------------   77 (626)
                      .+.++|++ .+|.|++++       ++.|+++|. +|+.+|.+......                               
T Consensus       157 ~~~ssP~v-~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~  235 (599)
T 1w6s_A          157 TLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAW  235 (599)
T ss_dssp             BCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGG
T ss_pred             eeecCCEE-ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcce
Confidence            56788988 678999986       467999998 89999998764210                               


Q ss_pred             -----CcccCeEEe-cCCeEEEEEC-----------------CeEEEEECCCCccccceeEEEecCCCCCCCCCCeeE-E
Q 006913           78 -----NIGTAPVHG-GTGEVYIVAE-----------------NRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAG-I  133 (626)
Q Consensus        78 -----~i~~sp~iD-~dG~IwVgT~-----------------ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~-s  133 (626)
                           .....+..| ..+.||+++.                 +.|+++|+.+++     ..|.+.........-.... .
T Consensus       236 ~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~-----~~W~~q~~~~d~wd~d~~~~p  310 (599)
T 1w6s_A          236 KIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGE-----AKFGYQKTPHDEWDYAGVNVM  310 (599)
T ss_dssp             GGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCC-----EEEEEESSTTCSSCCCCCCCC
T ss_pred             ecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCc-----eeeEeecCCCccccccCCCcc
Confidence                 011234555 4578999983                 279999999986     4666543321110000011 1


Q ss_pred             EEEE---cCC---e-EEEEEcCCeEEEEeC-CCcEEEEECCc--cc---ccccc-------------------cccccCC
Q 006913          134 AVST---SSS---S-VYINVKGRALFAFMT-HGQLLWSAGPV--LD---QLGYR-------------------QGCTKTD  181 (626)
Q Consensus       134 ~~~d---~dG---~-LwIgT~~gGL~a~d~-~G~~~w~~~~~--~~---~~~~~-------------------~~~~~~l  181 (626)
                      ++.+   .+|   . ++.++.++.|+++|. +|+++|.....  .+   .....                   ..|+...
T Consensus       311 ~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~  390 (599)
T 1w6s_A          311 MLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAM  390 (599)
T ss_dssp             EEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTT
T ss_pred             EEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcc
Confidence            1222   456   3 555777888999997 59999975210  00   00000                   0011111


Q ss_pred             CCCccccceEEEcCCCeEEEEc---------------------------------------CCCeEEEEeCCCCeEEEEE
Q 006913          182 VDCYFTSVPVIDQCEGSIYISN---------------------------------------TQGELYSLSAHSPYFNWIQ  222 (626)
Q Consensus       182 ~~~~i~sspviD~~dG~LwIGT---------------------------------------~~GgL~~ld~~tg~~~w~~  222 (626)
                      ...+ ...+.+|+..+.+|+..                                       ..|.|+++|+.+|++.|..
T Consensus       391 Gg~~-w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~  469 (599)
T 1w6s_A          391 GYHN-QGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEK  469 (599)
T ss_dssp             CSSC-SCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEE
T ss_pred             cccC-CCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEe
Confidence            1111 12344554334444421                                       3478999999999999987


Q ss_pred             cCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEE-eeCCeEEEEEcCC
Q 006913          223 DLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVV-DSNGWISVGSLDG  292 (626)
Q Consensus       223 ~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvv-D~dG~IWVGT~~g  292 (626)
                      ..... ..........|.+|+++. .+.++++|.+||+.+|.+..+.  .....|+. ..+|++||+...|
T Consensus       470 ~~~~~-~~~g~~~tagg~vf~gt~-dg~l~A~D~~tG~~lW~~~l~~--g~~~~P~~y~~~G~qyv~~~~G  536 (599)
T 1w6s_A          470 MERFA-VWGGTMATAGDLVFYGTL-DGYLKARDSDTGDLLWKFKIPS--GAIGYPMTYTHKGTQYVAIYYG  536 (599)
T ss_dssp             EESSC-CCSBCEEETTTEEEEECT-TSEEEEEETTTCCEEEEEECSS--CCCSCCEEEEETTEEEEEEEEC
T ss_pred             cCCCC-ccCcceEecCCEEEEECC-CCeEEEEECCCCCEEEEeeCCC--CcEeccEEEEeCCEEEEEEEcc
Confidence            54321 111222335789999985 5799999999999999987662  22333433 3489999987544

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.25  E-value=1.4e-09  Score=124.90  Aligned_cols=225  Identities=21%  Similarity=0.298  Sum_probs=146.2

Q ss_pred             CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE-CCeEEEEECCCCccccceeEEEecCCCCCC----CCCCeeEEEEEEc
Q 006913           64 NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKG----GTGAIAGIAVSTS  138 (626)
Q Consensus        64 ~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~----~~~~~I~s~~~d~  138 (626)
                      +++..|++.++.......+|++ .+|.||+++ ++.|+++|..+++     ..|.+.......    .....+...+...
T Consensus        43 ~l~~~W~~~~~~~~~~~~~P~v-~~g~vyv~~~~~~v~AlD~~tG~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (668)
T 1kv9_A           43 SLGLAWYMDLDNTRGLEATPLF-HDGVIYTSMSWSRVIAVDAASGK-----ELWRYDPEVAKVKARTSCCDAVNRGVALW  116 (668)
T ss_dssp             GEEEEEEEECSCCSCCCCCCEE-ETTEEEEEEGGGEEEEEETTTCC-----EEEEECCCCCGGGGGGCTTCSCCCCCEEE
T ss_pred             CcceEEEEECCCCCCcccCCEE-ECCEEEEECCCCeEEEEECCCCh-----hceEECCCCCccccccccccCCccceEEE
Confidence            4567898887542224567877 468999998 7889999999886     467664321100    0001111122335


Q ss_pred             CCeEEEEEcCCeEEEEeC-CCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcC------CCeEEEE
Q 006913          139 SSSVYINVKGRALFAFMT-HGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT------QGELYSL  211 (626)
Q Consensus       139 dG~LwIgT~~gGL~a~d~-~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~------~GgL~~l  211 (626)
                      ++.||+++.++.|+++|. +|+.+|.+..     .  .  ..  ....+..+|++.  ++.||+++.      +|.|+++
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~-----~--~--~~--~~~~~~~~P~v~--~~~v~vg~~~~~~~~~g~v~a~  183 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQT-----T--D--PA--KPYSITGAPRVV--KGKVIIGNGGAEYGVRGFVSAY  183 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEEC-----S--C--TT--SSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeecc-----C--C--CC--CcceecCCCEEE--CCEEEEeCCCCCcCCCCEEEEE
Confidence            789999998899999997 5999998621     0  0  00  011234567887  789999875      3789999


Q ss_pred             eCCCCeEEEEEcCC-C--CC---------------------------cceeeeeec-CCeEEEEEcCC------------
Q 006913          212 SAHSPYFNWIQDLS-S--FD---------------------------KAFTLTPGN-NGYLYVTIPVR------------  248 (626)
Q Consensus       212 d~~tg~~~w~~~~~-s--~~---------------------------~v~sI~~D~-dG~LwVGT~~g------------  248 (626)
                      |.++|+..|..... .  ..                           ....++.|. .+.+|+++.++            
T Consensus       184 D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~  263 (668)
T 1kv9_A          184 DADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGG  263 (668)
T ss_dssp             ETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTC
T ss_pred             ECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCC
Confidence            99999999986531 1  00                           001245553 57999997432            


Q ss_pred             ------CEEEEEECCCCcEEEEEecCCCCC----ceeeEEE---eeCCe----EEEEEcCCeEEEEcC-CCCEEEEe
Q 006913          249 ------ALVLALDTSSGNILWHKSVGPLGS----AEYAPVV---DSNGW----ISVGSLDGLLYSFSP-SGVLNKFS  307 (626)
Q Consensus       249 ------G~l~alD~~tG~~~w~~~~~~l~~----~~sspvv---D~dG~----IWVGT~~gGLy~~d~-~g~~~~~~  307 (626)
                            +.++++|+.||+.+|.+...+...    ....++.   ..+|.    |++++.+|.||++|. +|+++|..
T Consensus       264 gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~  340 (668)
T 1kv9_A          264 GDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAE  340 (668)
T ss_dssp             CCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred             CCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccc
Confidence                  149999999999999987642110    0011111   12564    889999999999997 48888643

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.24  E-value=2.7e-09  Score=108.25  Aligned_cols=233  Identities=9%  Similarity=0.020  Sum_probs=141.8

Q ss_pred             cCCceeeeeEEeeCCE--EEEEe-CCcEEEEcCCCCEEEEEeCCCCCCcccCeEEecCCeEEEEE--CCeEEEEECCCCc
Q 006913           34 RSAFRLSKPLIGEDGK--IYACS-EKTLFAFESNGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA--ENRVLKVDLLKIG  108 (626)
Q Consensus        34 ~~~~~~Sspvid~dG~--IwIgS-dggL~a~d~~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT--~ggL~~id~~~~~  108 (626)
                      .......+|+.+.+|+  +|+++ +++|++++..+... .+....  ....++.++.+|++|+++  +++|+.+|+.++.
T Consensus        25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~--~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~  101 (296)
T 3e5z_A           25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLS-PEMHPS--HHQNGHCLNKQGHLIACSHGLRRLERQREPGGE  101 (296)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSCEE-EEESSC--SSEEEEEECTTCCEEEEETTTTEEEEECSTTCC
T ss_pred             cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCCeE-EEECCC--CCcceeeECCCCcEEEEecCCCeEEEEcCCCCc
Confidence            3455667899988886  55565 57899999844432 233222  234567788999999998  4799999996654


Q ss_pred             cccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEE-----Ec-------------CCeEEEEeCCCcEEEEECCcccc
Q 006913          109 TSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYIN-----VK-------------GRALFAFMTHGQLLWSAGPVLDQ  170 (626)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIg-----T~-------------~gGL~a~d~~G~~~w~~~~~~~~  170 (626)
                      .     .........  .....+..+..+.+|+||+.     +.             .++|+.++++|+.......    
T Consensus       102 ~-----~~~~~~~~~--~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~----  170 (296)
T 3e5z_A          102 W-----ESIADSFEG--KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRD----  170 (296)
T ss_dssp             E-----EEEECEETT--EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECC----
T ss_pred             E-----EEEeeccCC--CCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEeecC----
Confidence            2     221111000  00111233556789999994     31             3589999987665332100    


Q ss_pred             cccccccccCCCCCccccceEEEcCCCe-EEEEcCCCeEEEEeCC-CCeE-EEEEc-CCCCCcceeeeeecCCeEEEEEc
Q 006913          171 LGYRQGCTKTDVDCYFTSVPVIDQCEGS-IYISNTQGELYSLSAH-SPYF-NWIQD-LSSFDKAFTLTPGNNGYLYVTIP  246 (626)
Q Consensus       171 ~~~~~~~~~~l~~~~i~sspviD~~dG~-LwIGT~~GgL~~ld~~-tg~~-~w~~~-~~s~~~v~sI~~D~dG~LwVGT~  246 (626)
                      +             .....++.++ +|. ++..+.++.|++++.+ +|.+ .-... ......+..++.|.+|+|||++ 
T Consensus       171 ~-------------~~~~gi~~s~-dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-  235 (296)
T 3e5z_A          171 R-------------VKPNGLAFLP-SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-  235 (296)
T ss_dssp             C-------------SSEEEEEECT-TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-
T ss_pred             C-------------CCCccEEECC-CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-
Confidence            0             0112355665 555 4444556789999875 4554 11111 1112234567889999999998 


Q ss_pred             CCCEEEEEECCCCcEEEEEecCCCCCceeeEEEe-eC-CeEEEEEcCCeEEEEcCCC
Q 006913          247 VRALVLALDTSSGNILWHKSVGPLGSAEYAPVVD-SN-GWISVGSLDGLLYSFSPSG  301 (626)
Q Consensus       247 ~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD-~d-G~IWVGT~~gGLy~~d~~g  301 (626)
                       ++.+..+|+. |+.......+.  . ..+++.+ ++ +.||+++. ++|+++++..
T Consensus       236 -~~~v~~~~~~-g~~~~~~~~~~--~-~~~~~f~~~d~~~L~v~t~-~~l~~~~~~~  286 (296)
T 3e5z_A          236 -GDGVHVLTPD-GDELGRVLTPQ--T-TSNLCFGGPEGRTLYMTVS-TEFWSIETNV  286 (296)
T ss_dssp             -TTEEEEECTT-SCEEEEEECSS--C-CCEEEEESTTSCEEEEEET-TEEEEEECSC
T ss_pred             -CCeEEEECCC-CCEEEEEECCC--C-ceeEEEECCCCCEEEEEcC-CeEEEEEccc
Confidence             4688899975 76665544432  1 3445553 34 47999995 6999999753

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.23  E-value=9.4e-09  Score=106.93  Aligned_cols=236  Identities=14%  Similarity=0.123  Sum_probs=150.6

Q ss_pred             eeEEeeCCEEEEEe--CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE--CCeEEEEECCCCccccceeE
Q 006913           41 KPLIGEDGKIYACS--EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA--ENRVLKVDLLKIGTSESATQ  115 (626)
Q Consensus        41 spvid~dG~IwIgS--dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT--~ggL~~id~~~~~~~~~~~~  115 (626)
                      ...+ .++.+|+++  ++.+..+|. +++.+..+....   ....+..+.+|.+|++.  ++.|.++|+.++..     .
T Consensus        48 ~i~~-~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~---~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~-----~  118 (328)
T 3dsm_A           48 SMVI-RDGIGWIVVNNSHVIFAIDINTFKEVGRITGFT---SPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEI-----T  118 (328)
T ss_dssp             EEEE-ETTEEEEEEGGGTEEEEEETTTCCEEEEEECCS---SEEEEEEEETTEEEEEEBSCSEEEEEETTTTEE-----E
T ss_pred             EEEE-ECCEEEEEEcCCCEEEEEECcccEEEEEcCCCC---CCcEEEEeCCCeEEEEECCCCeEEEEECCCCeE-----E
Confidence            3445 578999987  467999998 888876664321   22345666678999998  68999999988642     2


Q ss_pred             EEecCCCCCCCCCCeeEEEEEEcCCeEEEEEc--CCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEE
Q 006913          116 VFYGTGSGKGGTGAIAGIAVSTSSSSVYINVK--GRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVI  192 (626)
Q Consensus       116 ~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~--~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspvi  192 (626)
                      ..+................+  .++.||++..  ++.|..+|+. ++..+....     +           . ....+.+
T Consensus       119 ~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-----g-----------~-~p~~i~~  179 (328)
T 3dsm_A          119 GYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI-----G-----------I-QPTSLVM  179 (328)
T ss_dssp             EEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC-----S-----------S-CBCCCEE
T ss_pred             EEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-----C-----------C-CccceEE
Confidence            22221110000001112222  6889999974  5789999985 777665410     1           0 0133567


Q ss_pred             EcCCCeEEEEcCC-----------CeEEEEeCCCCeEEEEEcCCCCCcceeeeeecC-CeEEEEEcCCCEEEEEECCCCc
Q 006913          193 DQCEGSIYISNTQ-----------GELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNN-GYLYVTIPVRALVLALDTSSGN  260 (626)
Q Consensus       193 D~~dG~LwIGT~~-----------GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~d-G~LwVGT~~gG~l~alD~~tG~  260 (626)
                      ++ +|++|+++..           +.|+++|++++++......+.......++.+.+ +.||++.  . .++.+|..+++
T Consensus       180 ~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~--~-~v~~~d~~t~~  255 (328)
T 3dsm_A          180 DK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN--N-DIWRMPVEADR  255 (328)
T ss_dssp             CT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES--S-SEEEEETTCSS
T ss_pred             cC-CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc--c-EEEEEECCCCc
Confidence            75 8999999864           579999999988775544322123456777754 5788864  2 78889988887


Q ss_pred             EEEEEecCCCCCceeeEEEee-CCeEEEEE-----cCCeEEEEcCCCCEEEEee
Q 006913          261 ILWHKSVGPLGSAEYAPVVDS-NGWISVGS-----LDGLLYSFSPSGVLNKFSK  308 (626)
Q Consensus       261 ~~w~~~~~~l~~~~sspvvD~-dG~IWVGT-----~~gGLy~~d~~g~~~~~~~  308 (626)
                      +...............+.+++ +|+||++.     .++.|++|+++|+..+...
T Consensus       256 ~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i~  309 (328)
T 3dsm_A          256 VPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFY  309 (328)
T ss_dssp             CCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEEE
T ss_pred             eeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEEE
Confidence            531100110012345577885 79999997     4578999999888776543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.23  E-value=6.6e-09  Score=106.67  Aligned_cols=232  Identities=11%  Similarity=0.096  Sum_probs=143.5

Q ss_pred             eeeeeEEeeCCEEEEE-e-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE-C-----CeEEEEECCCCc
Q 006913           38 RLSKPLIGEDGKIYAC-S-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA-E-----NRVLKVDLLKIG  108 (626)
Q Consensus        38 ~~Sspvid~dG~IwIg-S-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT-~-----ggL~~id~~~~~  108 (626)
                      ....|..+.+|+||+. + +++|+++|. ++++........  ....++..+.+|++|+++ .     ++|+++|++++.
T Consensus        46 ~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~  123 (333)
T 2dg1_A           46 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHK--ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN  123 (333)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSS--SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred             cccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCC--CCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCE
Confidence            4467888889999985 4 568999998 666542221111  234567788899999997 3     489999988764


Q ss_pred             cccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcC-------CeEEEEeCC-CcEEEEECCcccccccccccccC
Q 006913          109 TSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKG-------RALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKT  180 (626)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~-------gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~  180 (626)
                      .     .......    .....+..+..+.+|++|+++..       ++|+.++++ ++..... .   ...        
T Consensus       124 ~-----~~~~~~~----~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~---~~~--------  182 (333)
T 2dg1_A          124 L-----QDIIEDL----STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-Q---NIS--------  182 (333)
T ss_dssp             C-----EEEECSS----SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-E---EES--------
T ss_pred             E-----EEEEccC----ccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee-c---CCC--------
Confidence            2     2111111    11224555667889999999863       679999986 4443211 0   000        


Q ss_pred             CCCCccccceEEEcCCC-eEEEEcC-CCeEEEEeCCC-Ce-EEEE-----EcCCCCCcceeeeeecCCeEEEEEcCCCEE
Q 006913          181 DVDCYFTSVPVIDQCEG-SIYISNT-QGELYSLSAHS-PY-FNWI-----QDLSSFDKAFTLTPGNNGYLYVTIPVRALV  251 (626)
Q Consensus       181 l~~~~i~sspviD~~dG-~LwIGT~-~GgL~~ld~~t-g~-~~w~-----~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l  251 (626)
                           ....+.+++ +| .||++.. ++.|++++.++ +. ....     ........+..++.|.+|+||+++..++.+
T Consensus       183 -----~~~~i~~~~-dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v  256 (333)
T 2dg1_A          183 -----VANGIALST-DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRV  256 (333)
T ss_dssp             -----SEEEEEECT-TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEE
T ss_pred             -----cccceEECC-CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEE
Confidence                 012355665 55 5888754 57899999853 22 2111     111111234568889999999998656789


Q ss_pred             EEEECCCCcEEEEEecCCC--C--CceeeEEEeeC-CeEEEEEcCC------eEEEEcC
Q 006913          252 LALDTSSGNILWHKSVGPL--G--SAEYAPVVDSN-GWISVGSLDG------LLYSFSP  299 (626)
Q Consensus       252 ~alD~~tG~~~w~~~~~~l--~--~~~sspvvD~d-G~IWVGT~~g------GLy~~d~  299 (626)
                      ..+|+ +++....+..+..  +  .....++.+++ +.||+++.++      +||+++.
T Consensus       257 ~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~  314 (333)
T 2dg1_A          257 LVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG  314 (333)
T ss_dssp             EEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred             EEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEec
Confidence            99997 5666555443310  0  02345666666 4899998763      6777764

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.21  E-value=9.6e-09  Score=104.10  Aligned_cols=199  Identities=13%  Similarity=0.005  Sum_probs=126.3

Q ss_pred             ccCeEEecCCe--EEEEE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcC-CeEEEEe
Q 006913           80 GTAPVHGGTGE--VYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKG-RALFAFM  155 (626)
Q Consensus        80 ~~sp~iD~dG~--IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~-gGL~a~d  155 (626)
                      ..+|+.|.+|+  +|+++ +++|+++++.++ .    ..+..        ....+..+..+.+|+||+++.. ++|+.+|
T Consensus        30 ~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~----~~~~~--------~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d   96 (296)
T 3e5z_A           30 TEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L----SPEMH--------PSHHQNGHCLNKQGHLIACSHGLRRLERQR   96 (296)
T ss_dssp             EEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E----EEEES--------SCSSEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred             ccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e----EEEEC--------CCCCcceeeECCCCcEEEEecCCCeEEEEc
Confidence            45688888887  45555 689999999875 2    12211        1123455667889999999864 7899999


Q ss_pred             C-CCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEE-----Ec-------------CCCeEEEEeCCCC
Q 006913          156 T-HGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYI-----SN-------------TQGELYSLSAHSP  216 (626)
Q Consensus       156 ~-~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwI-----GT-------------~~GgL~~ld~~tg  216 (626)
                      + +|+.......    .   .+..     ......+++|+ +|+||+     |+             ..++|++++++ +
T Consensus        97 ~~~g~~~~~~~~----~---~~~~-----~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g  162 (296)
T 3e5z_A           97 EPGGEWESIADS----F---EGKK-----LNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G  162 (296)
T ss_dssp             STTCCEEEEECE----E---TTEE-----CCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S
T ss_pred             CCCCcEEEEeec----c---CCCC-----CCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-C
Confidence            8 5876543210    0   0000     00123467786 899999     43             14589999988 5


Q ss_pred             eEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECC-CCcE-EEEEecCCCCCceeeEEEeeCCeEEEEEcCCeE
Q 006913          217 YFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTS-SGNI-LWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLL  294 (626)
Q Consensus       217 ~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~-tG~~-~w~~~~~~l~~~~sspvvD~dG~IWVGT~~gGL  294 (626)
                      ++.....  .......++.+.+|+++++....+.++.++.. +|.+ ...............+++|++|+||+++ +++|
T Consensus       163 ~~~~~~~--~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v  239 (296)
T 3e5z_A          163 TLSAPIR--DRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGV  239 (296)
T ss_dssp             CEEEEEC--CCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEE
T ss_pred             CEEEeec--CCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeE
Confidence            5543322  22234567778888766665455788888865 5665 2111111111223457899999999999 8999


Q ss_pred             EEEcCCCCEEEEee
Q 006913          295 YSFSPSGVLNKFSK  308 (626)
Q Consensus       295 y~~d~~g~~~~~~~  308 (626)
                      ++|+++|+......
T Consensus       240 ~~~~~~g~~~~~~~  253 (296)
T 3e5z_A          240 HVLTPDGDELGRVL  253 (296)
T ss_dssp             EEECTTSCEEEEEE
T ss_pred             EEECCCCCEEEEEE
Confidence            99999987665443

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.21  E-value=2.5e-07  Score=94.61  Aligned_cols=261  Identities=12%  Similarity=0.065  Sum_probs=164.2

Q ss_pred             eeeEEeeCC-EEEEEe--------CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCe-EEEEE--CCeEEEEECCC
Q 006913           40 SKPLIGEDG-KIYACS--------EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGE-VYIVA--ENRVLKVDLLK  106 (626)
Q Consensus        40 Sspvid~dG-~IwIgS--------dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~-IwVgT--~ggL~~id~~~  106 (626)
                      ..+..+.+| .||+++        ++.++.+|. +++..+.+....   ....+.++.+|+ +|++.  ++.|..+|..+
T Consensus        44 ~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~  120 (353)
T 3vgz_A           44 YEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL---KPFGATINNTTQTLWFGNTVNSAVTAIDAKT  120 (353)
T ss_dssp             EEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS---CCCSEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred             cceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC---CcceEEECCCCCEEEEEecCCCEEEEEeCCC
Confidence            344555555 788877        336999998 788877665432   234567778876 88876  57899999987


Q ss_pred             CccccceeEEEecCCC-CC--CCCCCeeEEEEEEcC-CeEEEEEc--CCeEEEEeCC-CcEEEEECCccccccccccccc
Q 006913          107 IGTSESATQVFYGTGS-GK--GGTGAIAGIAVSTSS-SSVYINVK--GRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTK  179 (626)
Q Consensus       107 ~~~~~~~~~~~~~~~~-~~--~~~~~~I~s~~~d~d-G~LwIgT~--~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~  179 (626)
                      +..     ...+.... ..  .........+....+ +.+|++..  ++.|+.+|.. ++..+....        .    
T Consensus       121 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~--------~----  183 (353)
T 3vgz_A          121 GEV-----KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQN--------T----  183 (353)
T ss_dssp             CCE-----EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECC--------C----
T ss_pred             Cee-----EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecC--------C----
Confidence            642     22222111 00  000111233444444 56888873  4569999985 777665410        0    


Q ss_pred             CCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCC---CCcceeeeeecCC-eEEEEEcCCCEEEEEE
Q 006913          180 TDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSS---FDKAFTLTPGNNG-YLYVTIPVRALVLALD  255 (626)
Q Consensus       180 ~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s---~~~v~sI~~D~dG-~LwVGT~~gG~l~alD  255 (626)
                         +.. ...+.+++.++.||++..++.|+.+|..+++..+......   ...+..+..+.+| .||++....+.++.+|
T Consensus       184 ---~~~-~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d  259 (353)
T 3vgz_A          184 ---GKM-STGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVD  259 (353)
T ss_dssp             ---CTT-CCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEE
T ss_pred             ---CCc-cceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEE
Confidence               000 1234565435669999888999999999998887655422   1223446667666 5898876668999999


Q ss_pred             CCCCcEEEEEecCCCCCceeeEEEeeCCe-EEEEEc-CCeEEEEcCC-CCEEEEeeccCCCCccccCceEEEEEEecCCc
Q 006913          256 TSSGNILWHKSVGPLGSAEYAPVVDSNGW-ISVGSL-DGLLYSFSPS-GVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGL  332 (626)
Q Consensus       256 ~~tG~~~w~~~~~~l~~~~sspvvD~dG~-IWVGT~-~gGLy~~d~~-g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~  332 (626)
                      ..+++.......+.    ...+..+++|. +|++.. ++.|..+|.. ++.......         ......+..+.+|+
T Consensus       260 ~~~~~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~---------~~~~~~~~~s~dg~  326 (353)
T 3vgz_A          260 TRNGNILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT---------PTHPNSLALSADGK  326 (353)
T ss_dssp             TTTCCEEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC---------CSEEEEEEECTTSC
T ss_pred             CCCCcEEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec---------CCCCCeEEEcCCCC
Confidence            99999887665542    12356666765 899884 6789999975 655544331         11235677778887


Q ss_pred             -EEEEE
Q 006913          333 -KAILC  337 (626)
Q Consensus       333 -IwI~T  337 (626)
                       ||+..
T Consensus       327 ~l~v~~  332 (353)
T 3vgz_A          327 TLYVSV  332 (353)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence             66543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.20  E-value=5.9e-09  Score=106.45  Aligned_cols=216  Identities=10%  Similarity=0.081  Sum_probs=140.8

Q ss_pred             CCeEEEEE--CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCCCcEEEEEC
Q 006913           88 TGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTHGQLLWSAG  165 (626)
Q Consensus        88 dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~G~~~w~~~  165 (626)
                      .|++.++.  ++.|+++|+++++     ..|.+....     ......+....+|+|++ +.+++++++|++|+++|.+.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~-----~~w~~~~~~-----~~~~~~~~~~pdG~ilv-s~~~~V~~~d~~G~~~W~~~   72 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKE-----IVWEYPLEK-----GWECNSVAATKAGEILF-SYSKGAKMITRDGRELWNIA   72 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTE-----EEEEEECCT-----TCCCCEEEECTTSCEEE-ECBSEEEEECTTSCEEEEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCe-----EEEEeCCCc-----cCCCcCeEECCCCCEEE-eCCCCEEEECCCCCEEEEEc
Confidence            35555553  7899999997875     466654321     01234455667899999 56789999999999999862


Q ss_pred             CcccccccccccccCCCCCccccceEEEcCCCeEEEEcC--CCeEEEEeCCCCeEEEEEcCCC-C----CcceeeeeecC
Q 006913          166 PVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT--QGELYSLSAHSPYFNWIQDLSS-F----DKAFTLTPGNN  238 (626)
Q Consensus       166 ~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~--~GgL~~ld~~tg~~~w~~~~~s-~----~~v~sI~~D~d  238 (626)
                      .     +      .   ...+ .+..... +|+++++..  ++.++.+|++ |++.|...... .    .....+..+.+
T Consensus        73 ~-----~------~---~~~~-~~~~~~~-dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~~~~~~~~~~~~~v~~~~~  135 (276)
T 3no2_A           73 A-----P------A---GCEM-QTARILP-DGNALVAWCGHPSTILEVNMK-GEVLSKTEFETGIERPHAQFRQINKNKK  135 (276)
T ss_dssp             C-----C------T---TCEE-EEEEECT-TSCEEEEEESTTEEEEEECTT-SCEEEEEEECCSCSSGGGSCSCCEECTT
T ss_pred             C-----C------C---Cccc-cccEECC-CCCEEEEecCCCCEEEEEeCC-CCEEEEEeccCCCCcccccccCceECCC
Confidence            1     0      0   0111 2233343 677777643  5679999985 57888754321 0    11223456778


Q ss_pred             CeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEEEEEc-CCeEEEEcCC-CCEEEEeeccCCCCcc
Q 006913          239 GYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSL-DGLLYSFSPS-GVLNKFSKSDTSDSVI  316 (626)
Q Consensus       239 G~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~-~gGLy~~d~~-g~~~~~~~~~~~~~~i  316 (626)
                      |+++++....+.++++|+. |+.+|.+..+.  .... .....+|+++++.. ++.|+++|++ |++.|.........  
T Consensus       136 G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~--~~~~-~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~--  209 (276)
T 3no2_A          136 GNYLVPLFATSEVREIAPN-GQLLNSVKLSG--TPFS-SAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEG--  209 (276)
T ss_dssp             SCEEEEETTTTEEEEECTT-SCEEEEEECSS--CCCE-EEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBS--
T ss_pred             CCEEEEecCCCEEEEECCC-CCEEEEEECCC--Cccc-eeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCC--
Confidence            9988887667899999987 99999987642  2233 34456888888655 4479999997 99999765221111  


Q ss_pred             ccCceEEEEEEecCCcEEEEE
Q 006913          317 QSSPYWFHLLGPSIGLKAILC  337 (626)
Q Consensus       317 lssp~V~~Il~DsdG~IwI~T  337 (626)
                      ...+.+..+....+|++|+..
T Consensus       210 ~~l~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          210 VQLFFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             CCCSEEEEEEECTTSCEEEEE
T ss_pred             ccccccccceEcCCCCEEEEe
Confidence            112345567778899999764

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.20  E-value=9.7e-09  Score=104.95  Aligned_cols=228  Identities=9%  Similarity=0.043  Sum_probs=141.6

Q ss_pred             CCceeeeeEEee-CCEEEEEe--CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEECCeEEEEECCCCccc
Q 006913           35 SAFRLSKPLIGE-DGKIYACS--EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVAENRVLKVDLLKIGTS  110 (626)
Q Consensus        35 ~~~~~Sspvid~-dG~IwIgS--dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT~ggL~~id~~~~~~~  110 (626)
                      ....--+|+-+. ++.||+..  .+.|+++|. ++... .+..+   ....++..+.+|++|++++++|+++|++++.+ 
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~---~~~~~i~~~~dG~l~v~~~~~l~~~d~~~g~~-   85 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVTMD---APVSSVALRQSGGYVATIGTKFCALNWKEQSA-   85 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEECS---SCEEEEEEBTTSSEEEEETTEEEEEETTTTEE-
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEeCC---CceEEEEECCCCCEEEEECCeEEEEECCCCcE-
Confidence            345566787765 57777765  568999998 55543 22222   23456778899999999989999999987632 


Q ss_pred             cceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcC------------CeEEEEeCCCcEEEEECCcccccccccccc
Q 006913          111 ESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKG------------RALFAFMTHGQLLWSAGPVLDQLGYRQGCT  178 (626)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~------------gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~  178 (626)
                          ........  ......+..+..+.+|++|+++..            ++|+.++++|+......    .+.      
T Consensus        86 ----~~~~~~~~--~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~----~~~------  149 (297)
T 3g4e_A           86 ----VVLATVDN--DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD----QVD------  149 (297)
T ss_dssp             ----EEEEECCT--TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE----EES------
T ss_pred             ----EEEEecCC--CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEee----ccc------
Confidence                22211111  111223455667889999999742            47899998766532210    000      


Q ss_pred             cCCCCCccccceEEEcCCCeEEEEc-CCCeEEEEeC--CCCeEEEE---EcCCC-CCcceeeeeecCCeEEEEEcCCCEE
Q 006913          179 KTDVDCYFTSVPVIDQCEGSIYISN-TQGELYSLSA--HSPYFNWI---QDLSS-FDKAFTLTPGNNGYLYVTIPVRALV  251 (626)
Q Consensus       179 ~~l~~~~i~sspviD~~dG~LwIGT-~~GgL~~ld~--~tg~~~w~---~~~~s-~~~v~sI~~D~dG~LwVGT~~gG~l  251 (626)
                             ....++.++.+..||+.. ..+.|++++.  .+|.+...   ..... ......++.|.+|+|||++..++.+
T Consensus       150 -------~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v  222 (297)
T 3g4e_A          150 -------ISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRV  222 (297)
T ss_dssp             -------BEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEE
T ss_pred             -------cccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEE
Confidence                   112345554234577654 4667888875  55654321   11111 1234567889999999999777789


Q ss_pred             EEEECCCCcEEEEEecCCCCCceeeEEEe-e-CCeEEEEEcCC
Q 006913          252 LALDTSSGNILWHKSVGPLGSAEYAPVVD-S-NGWISVGSLDG  292 (626)
Q Consensus       252 ~alD~~tG~~~w~~~~~~l~~~~sspvvD-~-dG~IWVGT~~g  292 (626)
                      ..+|+.+|++......+.  ....++++. + .++|||++...
T Consensus       223 ~~~d~~tG~~~~~i~~p~--~~~t~~~f~g~d~~~L~vt~~~~  263 (297)
T 3g4e_A          223 IRLDPVTGKRLQTVKLPV--DKTTSCCFGGKNYSEMYVTCARD  263 (297)
T ss_dssp             EEECTTTCCEEEEEECSS--SBEEEEEEESGGGCEEEEEEBCT
T ss_pred             EEEcCCCceEEEEEECCC--CCceEEEEeCCCCCEEEEEcCCc
Confidence            999998898876655441  234556664 2 35899998643

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.20  E-value=2.4e-11  Score=129.33  Aligned_cols=189  Identities=12%  Similarity=0.135  Sum_probs=107.1

Q ss_pred             CeEEecCCeEEEEE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEE-EcCCeEEEEeC-CC
Q 006913           82 APVHGGTGEVYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYIN-VKGRALFAFMT-HG  158 (626)
Q Consensus        82 sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIg-T~~gGL~a~d~-~G  158 (626)
                      +|++ .++.||+++ ++.|+++|..+++     ..|.+..       +.+...+. ..++.+++. +.++.|+++|. +|
T Consensus         4 sP~v-~~~~v~~gs~dg~v~a~d~~tG~-----~~W~~~~-------~~~~s~p~-~~~g~~~v~~s~dg~l~a~d~~tG   69 (369)
T 2hz6_A            4 TVTL-PETLLFVSTLDGSLHAVSKRTGS-----IKWTLKE-------DPVLQVPT-HVEEPAFLPDPNDGSLYTLGSKNN   69 (369)
T ss_dssp             -----CTTEEEEEETTSEEEEEETTTCC-----EEEEEEC-------CCSCCCC------CCEEECTTTCCEEEC-----
T ss_pred             CCee-eCCEEEEEcCCCEEEEEECCCCC-----EEEEecC-------CCceecce-EcCCCEEEEeCCCCEEEEEECCCC
Confidence            5666 468999999 7899999998886     3565532       11222222 245656665 67788999998 59


Q ss_pred             cEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecC
Q 006913          159 QLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNN  238 (626)
Q Consensus       159 ~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~d  238 (626)
                      +.+|....       ..  .     ..+..+|++.. ++.||+|+.++.|+++|+++|+..|.......  . .... .+
T Consensus        70 ~~~w~~~~-------~~--~-----~~~~~sp~~~~-~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~--~-~~~p-~~  130 (369)
T 2hz6_A           70 EGLTKLPF-------TI--P-----ELVQASPCRSS-DGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA--D-SLSP-ST  130 (369)
T ss_dssp             CCSEECSC-------CH--H-----HHHTTCSCC------CCCCEEEEEEEEECCC------------------------
T ss_pred             ceeeeeec-------cC--c-----cccccCceEec-CCEEEEEeCCCEEEEEECCCCcEEEEecCCCc--c-cccc-cC
Confidence            88887411       00  0     01123455522 68899998888999999999999998654321  1 1122 46


Q ss_pred             CeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEee----CCeEEEEEcCCeEEEEcC-CCCEEEEee
Q 006913          239 GYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDS----NGWISVGSLDGLLYSFSP-SGVLNKFSK  308 (626)
Q Consensus       239 G~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~----dG~IWVGT~~gGLy~~d~-~g~~~~~~~  308 (626)
                      +.||+++. ++.++++|..+|+.+|......    ...++++.    ++.+|+++.++.|+++|. +|+..|...
T Consensus       131 ~~v~~~~~-dg~v~a~d~~tG~~~W~~~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          131 SLLYLGRT-EYTITMYDTKTRELRWNATYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             --EEEEEE-EEEEECCCSSSSSCCCEEEEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred             CEEEEEec-CCEEEEEECCCCCEEEeEeccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence            78999985 4689999999999999865431    22344442    278999999999999998 589999765

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.19  E-value=9.7e-09  Score=105.42  Aligned_cols=226  Identities=14%  Similarity=0.111  Sum_probs=136.5

Q ss_pred             cCeEEecCCeEEEEE--CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCC-----eEEE
Q 006913           81 TAPVHGGTGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGR-----ALFA  153 (626)
Q Consensus        81 ~sp~iD~dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~g-----GL~a  153 (626)
                      .++..+.+|+||+..  +++|+++|+.++..    ..+....       ...+..+..+.+|++|+++..+     +|+.
T Consensus        48 ~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~----~~~~~~~-------~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~  116 (333)
T 2dg1_A           48 EGLNFDRQGQLFLLDVFEGNIFKINPETKEI----KRPFVSH-------KANPAAIKIHKDGRLFVCYLGDFKSTGGIFA  116 (333)
T ss_dssp             EEEEECTTSCEEEEETTTCEEEEECTTTCCE----EEEEECS-------SSSEEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred             cCcEECCCCCEEEEECCCCEEEEEeCCCCcE----EEEeeCC-------CCCcceEEECCCCcEEEEeCCCCCCCceEEE
Confidence            466778899999864  67899999887642    1121111       1245566678899999998654     8999


Q ss_pred             EeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCC-------CeEEEEeCCCCeEEEEEcCC
Q 006913          154 FMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQ-------GELYSLSAHSPYFNWIQDLS  225 (626)
Q Consensus       154 ~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~-------GgL~~ld~~tg~~~w~~~~~  225 (626)
                      +|++ +........        .    . .. .....+.+|+ +|++|+++..       ++|++++++++++.....  
T Consensus       117 ~d~~~~~~~~~~~~--------~----~-~~-~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--  179 (333)
T 2dg1_A          117 ATENGDNLQDIIED--------L----S-TA-YCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ--  179 (333)
T ss_dssp             ECTTSCSCEEEECS--------S----S-SC-CCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE--
T ss_pred             EeCCCCEEEEEEcc--------C----c-cC-CcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEEEeec--
Confidence            9986 443211100        0    0 00 1123467786 8999999863       689999998766644322  


Q ss_pred             CCCcceeeeeecCC-eEEEEEcCCCEEEEEECCC-CcEEEE------EecCCCCCceeeEEEeeCCeEEEEEcC-CeEEE
Q 006913          226 SFDKAFTLTPGNNG-YLYVTIPVRALVLALDTSS-GNILWH------KSVGPLGSAEYAPVVDSNGWISVGSLD-GLLYS  296 (626)
Q Consensus       226 s~~~v~sI~~D~dG-~LwVGT~~gG~l~alD~~t-G~~~w~------~~~~~l~~~~sspvvD~dG~IWVGT~~-gGLy~  296 (626)
                      ....+..++.+.+| .||++....+.++.+|..+ |.....      ..... ......+.+|++|++|+++.. ++|++
T Consensus       180 ~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~d~~G~l~v~~~~~~~v~~  258 (333)
T 2dg1_A          180 NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG-HEGPDSCCIDSDDNLYVAMYGQGRVLV  258 (333)
T ss_dssp             EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS-SSEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred             CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC-CCCCCceEECCCCCEEEEEcCCCEEEE
Confidence            11224456777787 4999875556888888643 432211      11111 123455788999999999854 78999


Q ss_pred             EcCCCCEEEEeeccCC-CCccccCceEEEEEEecCC-cEEEEEe
Q 006913          297 FSPSGVLNKFSKSDTS-DSVIQSSPYWFHLLGPSIG-LKAILCL  338 (626)
Q Consensus       297 ~d~~g~~~~~~~~~~~-~~~ilssp~V~~Il~DsdG-~IwI~T~  338 (626)
                      ++++++.......... .+   ....+..+..+.+| .||+.+.
T Consensus       259 ~d~~g~~~~~~~~~~~~~g---~~~~~~~~~~~~dg~~L~v~~~  299 (333)
T 2dg1_A          259 FNKRGYPIGQILIPGRDEG---HMLRSTHPQFIPGTNQLIICSN  299 (333)
T ss_dssp             ECTTSCEEEEEECTTGGGT---CSCBCCEEEECTTSCEEEEEEE
T ss_pred             ECCCCCEEEEEEcCCCccc---cccCcceEEECCCCCEEEEEeC
Confidence            9998775543331100 00   00012344445664 7887654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.19  E-value=3.7e-09  Score=121.83  Aligned_cols=227  Identities=19%  Similarity=0.272  Sum_probs=146.1

Q ss_pred             CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE-CCeEEEEECCCCccccceeEEEecCCCCCC----CCCCeeEEEEEEc
Q 006913           64 NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKG----GTGAIAGIAVSTS  138 (626)
Q Consensus        64 ~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~----~~~~~I~s~~~d~  138 (626)
                      +.+..|.+.++.......+|++ .+|.||+++ ++.|+++|..+++     ..|.+.......    .....+...+...
T Consensus        47 ~l~~~W~~~~~~~~~~~~~P~v-~~g~vyv~~~~~~v~AlD~~tG~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (689)
T 1yiq_A           47 QLGLAWSYKLDLDRGVEATPIV-VDGVMYTTGPFSVVYALDARDGR-----LIWKYDPQSDRHRAGEACCDAVNRGVAVW  120 (689)
T ss_dssp             GEEEEEEEECSSCSCCCCCCEE-ETTEEEEECGGGCEEEEETTTCC-----EEEEECCCCCGGGGGGCTTCSCCCCCEEE
T ss_pred             CceEEEEEECCCCCCceecCEE-ECCEEEEEcCCCeEEEEECCCCc-----eeEEEcCCCCccccccccccCCCCccEEE
Confidence            3467898877532223567877 468999998 6889999999886     467664321100    0001112222346


Q ss_pred             CCeEEEEEcCCeEEEEeC-CCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcC------CCeEEEE
Q 006913          139 SSSVYINVKGRALFAFMT-HGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT------QGELYSL  211 (626)
Q Consensus       139 dG~LwIgT~~gGL~a~d~-~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~------~GgL~~l  211 (626)
                      ++.||+++.++.|+++|. +|+++|.+....   .      .. ....+..+|++.  ++.||+++.      +|.|+++
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~---~------~~-~~~~~~~sP~v~--~g~v~vg~~~~~~~~~g~v~a~  188 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRA---D------HK-RSYTITGAPRVV--NGKVVIGNGGAEFGVRGYVTAY  188 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCS---C------TT-SCCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcC---C------CC-CCccccCCcEEE--CCEEEEEeCCCccCCCCEEEEE
Confidence            889999998899999997 599999862200   0      00 011234567776  789999864      4789999


Q ss_pred             eCCCCeEEEEEcCC-C--C-C-------------------------c-ceeeeee-cCCeEEEEEcCC------------
Q 006913          212 SAHSPYFNWIQDLS-S--F-D-------------------------K-AFTLTPG-NNGYLYVTIPVR------------  248 (626)
Q Consensus       212 d~~tg~~~w~~~~~-s--~-~-------------------------~-v~sI~~D-~dG~LwVGT~~g------------  248 (626)
                      |.++|+..|..... .  . .                         . ...+..| ..+.||+++.++            
T Consensus       189 D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~  268 (689)
T 1yiq_A          189 DAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAK  268 (689)
T ss_dssp             ETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTC
T ss_pred             ECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCC
Confidence            99999999986531 0  0 0                         0 0124455 367999997431            


Q ss_pred             ------CEEEEEECCCCcEEEEEecCCCC--C--ceeeEEE-e--eCC----eEEEEEcCCeEEEEcC-CCCEEEEee
Q 006913          249 ------ALVLALDTSSGNILWHKSVGPLG--S--AEYAPVV-D--SNG----WISVGSLDGLLYSFSP-SGVLNKFSK  308 (626)
Q Consensus       249 ------G~l~alD~~tG~~~w~~~~~~l~--~--~~sspvv-D--~dG----~IWVGT~~gGLy~~d~-~g~~~~~~~  308 (626)
                            +.++++|+.||+.+|.+...+..  .  ....++. |  .+|    .|++++.+|.||++|+ +|+++|...
T Consensus       269 gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~  346 (689)
T 1yiq_A          269 GDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKG  346 (689)
T ss_dssp             SCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred             CCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccc
Confidence                  14999999999999988654210  0  1111211 1  245    5888999999999997 588886443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.14  E-value=5.6e-08  Score=100.95  Aligned_cols=224  Identities=14%  Similarity=0.128  Sum_probs=138.1

Q ss_pred             CceeeeeEEeeC-CEEEEEe--CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEECCeEEEEECCCCcccc
Q 006913           36 AFRLSKPLIGED-GKIYACS--EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVAENRVLKVDLLKIGTSE  111 (626)
Q Consensus        36 ~~~~Sspvid~d-G~IwIgS--dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT~ggL~~id~~~~~~~~  111 (626)
                      .....+|..+.+ +.+|+..  .++|++++. ++... .+..+   ....++..+.+|++|+++.++|+.+|+.++..  
T Consensus        48 ~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~---~~v~~i~~~~dg~l~v~~~~gl~~~d~~~g~~--  121 (326)
T 2ghs_A           48 MLLGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALP---FMGSALAKISDSKQLIASDDGLFLRDTATGVL--  121 (326)
T ss_dssp             CSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECS---SCEEEEEEEETTEEEEEETTEEEEEETTTCCE--
T ss_pred             CCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECC---CcceEEEEeCCCeEEEEECCCEEEEECCCCcE--
Confidence            345567888764 6666654  568999998 55443 22222   13445677889999999988999999877642  


Q ss_pred             ceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcC-------CeEEEEeCCCcEEEEECCcccccccccccccCCCCC
Q 006913          112 SATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKG-------RALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDC  184 (626)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~-------gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~  184 (626)
                         .......  .......+..+..+.+|++|+++..       ++|+.++ +|+......    ...            
T Consensus       122 ---~~~~~~~--~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~~~~----~~~------------  179 (326)
T 2ghs_A          122 ---TLHAELE--SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTKLFA----DIS------------  179 (326)
T ss_dssp             ---EEEECSS--TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEEEEE----EES------------
T ss_pred             ---EEEeeCC--CCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CCcEEEeeC----CCc------------
Confidence               2221111  0111234556677889999999852       5899999 765432210    000            


Q ss_pred             ccccceEEEcCCC-eEEEEc-CCCeEEEEeCC--CC-eE----EEEEcCC-CCCcceeeeeecCCeEEEEEcCCCEEEEE
Q 006913          185 YFTSVPVIDQCEG-SIYISN-TQGELYSLSAH--SP-YF----NWIQDLS-SFDKAFTLTPGNNGYLYVTIPVRALVLAL  254 (626)
Q Consensus       185 ~i~sspviD~~dG-~LwIGT-~~GgL~~ld~~--tg-~~----~w~~~~~-s~~~v~sI~~D~dG~LwVGT~~gG~l~al  254 (626)
                       ....++.++ ++ .||++. ..+.|++++.+  +| .+    .+. ... .......++.|.+|+||+++..++.++.+
T Consensus       180 -~~~~i~~s~-dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~-~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~  256 (326)
T 2ghs_A          180 -IPNSICFSP-DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFI-DSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRY  256 (326)
T ss_dssp             -SEEEEEECT-TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEE-ECTTSSSEEEEEEECTTSCEEEEEETTTEEEEE
T ss_pred             -ccCCeEEcC-CCCEEEEEECCCCEEEEEEcccccCCcccCceEEE-ECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEE
Confidence             112345554 44 588764 35789999875  55 32    222 111 11234567889999999998666789999


Q ss_pred             ECCCCcEEEEEecCCCCCceeeEEEe-eC-CeEEEEEcCCe
Q 006913          255 DTSSGNILWHKSVGPLGSAEYAPVVD-SN-GWISVGSLDGL  293 (626)
Q Consensus       255 D~~tG~~~w~~~~~~l~~~~sspvvD-~d-G~IWVGT~~gG  293 (626)
                      |+ +|+.......+  .....+++++ ++ +.||+++..++
T Consensus       257 d~-~g~~~~~i~~~--~~~~~~~af~g~d~~~L~vt~~~~~  294 (326)
T 2ghs_A          257 DT-DGNHIARYEVP--GKQTTCPAFIGPDASRLLVTSAREH  294 (326)
T ss_dssp             CT-TCCEEEEEECS--CSBEEEEEEESTTSCEEEEEEBCTT
T ss_pred             CC-CCCEEEEEECC--CCCcEEEEEecCCCCEEEEEecCCC
Confidence            97 67765544443  1234556665 44 57999986543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.09  E-value=9.1e-08  Score=97.68  Aligned_cols=221  Identities=17%  Similarity=0.125  Sum_probs=133.3

Q ss_pred             ccCeEEec-CCeEEEEE--CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeC
Q 006913           80 GTAPVHGG-TGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMT  156 (626)
Q Consensus        80 ~~sp~iD~-dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~  156 (626)
                      .-.|+.+. ++.||+..  .+.|+++++.++..    ..+..         ...+..+..+.+|+||+++ .++|+.+|+
T Consensus        15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~----~~~~~---------~~~~~~i~~~~dG~l~v~~-~~~l~~~d~   80 (297)
T 3g4e_A           15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV----QRVTM---------DAPVSSVALRQSGGYVATI-GTKFCALNW   80 (297)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTCCE----EEEEC---------SSCEEEEEEBTTSSEEEEE-TTEEEEEET
T ss_pred             ccCCeEECCCCEEEEEECCCCEEEEEECCCCcE----EEEeC---------CCceEEEEECCCCCEEEEE-CCeEEEEEC
Confidence            34566665 56777765  68999999987631    11211         1245566678899999998 579999998


Q ss_pred             C-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcC------------CCeEEEEeCCCCeEEEEEc
Q 006913          157 H-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT------------QGELYSLSAHSPYFNWIQD  223 (626)
Q Consensus       157 ~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~------------~GgL~~ld~~tg~~~w~~~  223 (626)
                      + |+.......       ..    ... ......+.+|+ +|++|+++.            .+.|+++++++ +......
T Consensus        81 ~~g~~~~~~~~-------~~----~~~-~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~  146 (297)
T 3g4e_A           81 KEQSAVVLATV-------DN----DKK-NNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFD  146 (297)
T ss_dssp             TTTEEEEEEEC-------CT----TCS-SEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEE
T ss_pred             CCCcEEEEEec-------CC----CCC-CCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEee
Confidence            5 655432200       00    000 01123466786 899999973            35799999875 4332211


Q ss_pred             CCCCCcceeeeeecCC-eEEEEEcCCCEEEEEEC--CCCcEEEE---EecCCCCCceeeEEEeeCCeEEEEEcC-CeEEE
Q 006913          224 LSSFDKAFTLTPGNNG-YLYVTIPVRALVLALDT--SSGNILWH---KSVGPLGSAEYAPVVDSNGWISVGSLD-GLLYS  296 (626)
Q Consensus       224 ~~s~~~v~sI~~D~dG-~LwVGT~~gG~l~alD~--~tG~~~w~---~~~~~l~~~~sspvvD~dG~IWVGT~~-gGLy~  296 (626)
                        .......++.+.|| .||++....+.++.++.  .+|.....   ............+.+|++|+||+++.+ +.|++
T Consensus       147 --~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~  224 (297)
T 3g4e_A          147 --QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIR  224 (297)
T ss_dssp             --EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEE
T ss_pred             --ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEE
Confidence              11223456667777 58888755567777764  67765321   111110123456788999999999864 46999


Q ss_pred             EcCC-CCEEEEeeccCCCCccccCceEEEEEEe--cCCcEEEEEe
Q 006913          297 FSPS-GVLNKFSKSDTSDSVIQSSPYWFHLLGP--SIGLKAILCL  338 (626)
Q Consensus       297 ~d~~-g~~~~~~~~~~~~~~ilssp~V~~Il~D--sdG~IwI~T~  338 (626)
                      ||++ |+......        .+...+.++...  ..+.|||.+.
T Consensus       225 ~d~~tG~~~~~i~--------~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          225 LDPVTGKRLQTVK--------LPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             ECTTTCCEEEEEE--------CSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             EcCCCceEEEEEE--------CCCCCceEEEEeCCCCCEEEEEcC
Confidence            9996 87765443        122334455543  3357887654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.06  E-value=3.7e-08  Score=101.70  Aligned_cols=234  Identities=12%  Similarity=0.117  Sum_probs=138.5

Q ss_pred             eeeeeEEeeCCE-EEEEe-CCcEEEEcCC-CCEE-EEEeCCCC----------------CCcccCeEEec-CCeEEEEE-
Q 006913           38 RLSKPLIGEDGK-IYACS-EKTLFAFESN-GTIA-WSLDLDFT----------------CNIGTAPVHGG-TGEVYIVA-   95 (626)
Q Consensus        38 ~~Sspvid~dG~-IwIgS-dggL~a~d~~-G~~~-W~~~~~~~----------------~~i~~sp~iD~-dG~IwVgT-   95 (626)
                      .-..+++|.+|+ +|+++ +++|++++.. +.+. |.......                ......+.++. +|+|||+. 
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~   99 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC   99 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence            345567777887 88887 5789999984 4443 32211100                01123466785 89999997 


Q ss_pred             CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEc-CCeEEEEEcC------------------CeEEEEeC
Q 006913           96 ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTS-SSSVYINVKG------------------RALFAFMT  156 (626)
Q Consensus        96 ~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~-dG~LwIgT~~------------------gGL~a~d~  156 (626)
                      .++|+++++.++..     .........  ........+..+. +|+||+++..                  ++|+++|+
T Consensus       100 ~~~i~~~d~~~g~~-----~~~~~~~~~--~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  172 (322)
T 2fp8_A          100 YYHLSVVGSEGGHA-----TQLATSVDG--VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP  172 (322)
T ss_dssp             TTEEEEECTTCEEC-----EEEESEETT--EECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred             CCCEEEEeCCCCEE-----EEecccCCC--CcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeC
Confidence            67899999876421     111110000  0011234456778 8999998743                  56999998


Q ss_pred             C-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCC-eEEEEcC-CCeEEEEeCCCC---eEEEEEcCCCCCcc
Q 006913          157 H-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEG-SIYISNT-QGELYSLSAHSP---YFNWIQDLSSFDKA  230 (626)
Q Consensus       157 ~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG-~LwIGT~-~GgL~~ld~~tg---~~~w~~~~~s~~~v  230 (626)
                      . ++......    .+.             ....+++++ +| .||++.. ++.|++++.+++   ..........   .
T Consensus       173 ~~~~~~~~~~----~~~-------------~p~gia~~~-dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g---P  231 (322)
T 2fp8_A          173 STKETTLLLK----ELH-------------VPGGAEVSA-DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN---P  231 (322)
T ss_dssp             TTTEEEEEEE----EES-------------CCCEEEECT-TSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS---E
T ss_pred             CCCEEEEecc----CCc-------------cCcceEECC-CCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC---C
Confidence            6 54322110    000             012246665 55 5999854 578999998752   2222222211   4


Q ss_pred             eeeeeecCCeEEEEEcC----------CCEEEEEECCCCcEEEEEecCC-C-CCceeeEEEeeCCeEEEEEc-CCeEEEE
Q 006913          231 FTLTPGNNGYLYVTIPV----------RALVLALDTSSGNILWHKSVGP-L-GSAEYAPVVDSNGWISVGSL-DGLLYSF  297 (626)
Q Consensus       231 ~sI~~D~dG~LwVGT~~----------gG~l~alD~~tG~~~w~~~~~~-l-~~~~sspvvD~dG~IWVGT~-~gGLy~~  297 (626)
                      ..+++|.+|+|||++..          .+.++.+|+ +|+....+..+. . ......++. .+|+|||++. +++|.++
T Consensus       232 ~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~  309 (322)
T 2fp8_A          232 GNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGIL  309 (322)
T ss_dssp             EEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEE
T ss_pred             CCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEE
Confidence            56788999999999854          356889996 577665444331 0 112333444 4899999974 5688888


Q ss_pred             cCCC
Q 006913          298 SPSG  301 (626)
Q Consensus       298 d~~g  301 (626)
                      +...
T Consensus       310 ~~~~  313 (322)
T 2fp8_A          310 VYDK  313 (322)
T ss_dssp             EC--
T ss_pred             eccc
Confidence            7643

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.06  E-value=2.8e-08  Score=101.81  Aligned_cols=199  Identities=16%  Similarity=0.163  Sum_probs=121.9

Q ss_pred             ccCeEEecCCe-E-EEEE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcC-CeEEEEe
Q 006913           80 GTAPVHGGTGE-V-YIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKG-RALFAFM  155 (626)
Q Consensus        80 ~~sp~iD~dG~-I-wVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~-gGL~a~d  155 (626)
                      ...|+.+.+|+ | |+.+ +++|+++++.+. .    ..+...        ...+..+..+.+|+||+++.. ++|+.++
T Consensus        47 ~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~-~----~~~~~~--------~~~~~gl~~d~dG~l~v~~~~~~~v~~~~  113 (305)
T 3dr2_A           47 SEGPAWWEAQRTLVWSDLVGRRVLGWREDGT-V----DVLLDA--------TAFTNGNAVDAQQRLVHCEHGRRAITRSD  113 (305)
T ss_dssp             EEEEEEEGGGTEEEEEETTTTEEEEEETTSC-E----EEEEES--------CSCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred             ccCCeEeCCCCEEEEEECCCCEEEEEeCCCC-E----EEEeCC--------CCccceeeECCCCCEEEEECCCCEEEEEC
Confidence            34677777777 4 4444 689999998542 1    112111        123455667889999999865 7899999


Q ss_pred             CCCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEE-----EcC-------------CCeEEEEeCCCCe
Q 006913          156 THGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYI-----SNT-------------QGELYSLSAHSPY  217 (626)
Q Consensus       156 ~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwI-----GT~-------------~GgL~~ld~~tg~  217 (626)
                      ++|+.......    .   .+...     +....+++++ +|+||+     |+.             .++|+++|+++++
T Consensus       114 ~~g~~~~~~~~----~---~~~~~-----~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~  180 (305)
T 3dr2_A          114 ADGQAHLLVGR----Y---AGKRL-----NSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP  180 (305)
T ss_dssp             TTSCEEEEECE----E---TTEEC-----SCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC
T ss_pred             CCCCEEEEEec----c---CCCcc-----CCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc
Confidence            88775433211    0   00000     0123467886 999999     442             3689999998777


Q ss_pred             EEEEEcCCCCCcceeeeeecCCe-EEEEEcCC-----CEEEEEECCCCcEEEEE-ecCCCCCceeeEEEeeCCeEEEEEc
Q 006913          218 FNWIQDLSSFDKAFTLTPGNNGY-LYVTIPVR-----ALVLALDTSSGNILWHK-SVGPLGSAEYAPVVDSNGWISVGSL  290 (626)
Q Consensus       218 ~~w~~~~~s~~~v~sI~~D~dG~-LwVGT~~g-----G~l~alD~~tG~~~w~~-~~~~l~~~~sspvvD~dG~IWVGT~  290 (626)
                      +.....   ......++.+.||+ ||++....     ..++.++...+...... ...........+.+|.+|+||+++ 
T Consensus       181 ~~~~~~---~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-  256 (305)
T 3dr2_A          181 LQRMAD---LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-  256 (305)
T ss_dssp             CEEEEE---ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-
T ss_pred             EEEEec---CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-
Confidence            654321   12234566777774 99987531     57877776544321111 000001123457889999999999 


Q ss_pred             CCeEEEEcCCCCEEEEee
Q 006913          291 DGLLYSFSPSGVLNKFSK  308 (626)
Q Consensus       291 ~gGLy~~d~~g~~~~~~~  308 (626)
                      .++|++|+++|+......
T Consensus       257 ~~gv~~~~~~g~~~~~~~  274 (305)
T 3dr2_A          257 GTGVCVFDSDGQLLGHIP  274 (305)
T ss_dssp             SSEEEEECTTSCEEEEEE
T ss_pred             CCcEEEECCCCCEEEEEE
Confidence            568999999987665443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.05  E-value=7.1e-08  Score=99.54  Aligned_cols=237  Identities=14%  Similarity=0.089  Sum_probs=138.0

Q ss_pred             cCeEEecCCe-EEEEE-CCeEEEEECCCCccccceeEEEecCCCCC-------------CCCCCeeEEEEEEc-CCeEEE
Q 006913           81 TAPVHGGTGE-VYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGK-------------GGTGAIAGIAVSTS-SSSVYI  144 (626)
Q Consensus        81 ~sp~iD~dG~-IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~I~s~~~d~-dG~LwI  144 (626)
                      ..+++|.+|+ +|+++ +++|+++++.++..    ..+........             ..... ...+..+. +|+||+
T Consensus        22 ~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-p~gi~~~~~~g~l~v   96 (322)
T 2fp8_A           22 NSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF----VDFAYASPYWNKAFCENSTDAEKRPLCGR-TYDISYNLQNNQLYI   96 (322)
T ss_dssp             CCEECCTTCSSEEEECTTSEEEEECCTTTCE----EEEEESCTTCCHHHHTTCCCGGGHHHHCC-EEEEEEETTTTEEEE
T ss_pred             eEEEEcCCCCEEEEEcCCCeEEEECCCCCce----EEEecccccccccccccccchhccccCCC-CceEEEcCCCCcEEE
Confidence            3567788888 88887 78999999876532    12221110000             00011 23345564 899999


Q ss_pred             EEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcC-CCeEEEEcCC-----------------
Q 006913          145 NVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQC-EGSIYISNTQ-----------------  205 (626)
Q Consensus       145 gT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~-dG~LwIGT~~-----------------  205 (626)
                      ++..++|+.+|++ +........    .   .+  ..   ......+++| . +|+||+++..                 
T Consensus        97 ~d~~~~i~~~d~~~g~~~~~~~~----~---~~--~~---~~~p~~i~~d-~~~G~l~v~d~~~~~~~~~~~~~~~~~~~  163 (322)
T 2fp8_A           97 VDCYYHLSVVGSEGGHATQLATS----V---DG--VP---FKWLYAVTVD-QRTGIVYFTDVSTLYDDRGVQQIMDTSDK  163 (322)
T ss_dssp             EETTTEEEEECTTCEECEEEESE----E---TT--EE---CSCEEEEEEC-TTTCCEEEEESCSSCCTTCHHHHHHHTCC
T ss_pred             EECCCCEEEEeCCCCEEEEeccc----C---CC--Cc---ccccceEEEe-cCCCEEEEECCcccccccccceehcccCC
Confidence            9888899999987 433221100    0   00  00   0011235667 4 6899998643                 


Q ss_pred             -CeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCC-eEEEEEcCCCEEEEEECCC---CcEEEEEecCCCCCceeeEEEe
Q 006913          206 -GELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNG-YLYVTIPVRALVLALDTSS---GNILWHKSVGPLGSAEYAPVVD  280 (626)
Q Consensus       206 -GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG-~LwVGT~~gG~l~alD~~t---G~~~w~~~~~~l~~~~sspvvD  280 (626)
                       ++|+++|++++++......  ......++.+.+| .|||+....+.++.++..+   +.........  +  ...+++|
T Consensus       164 ~g~v~~~d~~~~~~~~~~~~--~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~--g--P~gi~~d  237 (322)
T 2fp8_A          164 TGRLIKYDPSTKETTLLLKE--LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIP--N--PGNIKRN  237 (322)
T ss_dssp             CEEEEEEETTTTEEEEEEEE--ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECS--S--EEEEEEC
T ss_pred             CceEEEEeCCCCEEEEeccC--CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCC--C--CCCeEEC
Confidence             6799999988776433221  1123456778887 4999976567899998654   2322211221  1  4557889


Q ss_pred             eCCeEEEEEcC-----------CeEEEEcCCCCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEEeeecCeeEEe
Q 006913          281 SNGWISVGSLD-----------GLLYSFSPSGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLMVVGQFSSL  347 (626)
Q Consensus       281 ~dG~IWVGT~~-----------gGLy~~d~~g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~t~~Ggl~~~  347 (626)
                      ++|+|||++..           +.|++|+++|+........  ++.  ..+.+..+.. .+|+|||.+.. .+.+..+
T Consensus       238 ~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~--~g~--~~~~~~~~~~-~~g~L~v~~~~-~~~i~~~  309 (322)
T 2fp8_A          238 ADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLP--PPF--AGEHFEQIQE-HDGLLYIGTLF-HGSVGIL  309 (322)
T ss_dssp             TTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECC--TTT--TTSCCCEEEE-ETTEEEEECSS-CSEEEEE
T ss_pred             CCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECC--CCC--ccccceEEEE-eCCEEEEeecC-CCceEEE
Confidence            99999999864           5799999998876544321  110  0112223433 47999976432 3444443

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.04  E-value=3.1e-07  Score=95.43  Aligned_cols=246  Identities=8%  Similarity=-0.031  Sum_probs=150.6

Q ss_pred             CCcEEEEcC-CCCEEEEEeC--CC--CCCcccCeEEecCCeEEEEE--CCeEEEEECCCCccccceeEEEecCCCCCCCC
Q 006913           55 EKTLFAFES-NGTIAWSLDL--DF--TCNIGTAPVHGGTGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGSGKGGT  127 (626)
Q Consensus        55 dggL~a~d~-~G~~~W~~~~--~~--~~~i~~sp~iD~dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~  127 (626)
                      +++|..+|. ++++...+..  ..  .......+.++ ++.+|+++  ++.|..+|+.+++.     ...+..       
T Consensus        16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~-----~~~i~~-------   82 (328)
T 3dsm_A           16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKE-----VGRITG-------   82 (328)
T ss_dssp             CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCE-----EEEEEC-------
T ss_pred             CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEE-----EEEcCC-------
Confidence            357999998 6775421110  00  00112334454 58899998  57899999988642     122211       


Q ss_pred             CCeeEEEEEEcCCeEEEEE-cCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcC-
Q 006913          128 GAIAGIAVSTSSSSVYINV-KGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT-  204 (626)
Q Consensus       128 ~~~I~s~~~d~dG~LwIgT-~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~-  204 (626)
                      ......+..+.+|++|++. .++.|..+|+. +++.+....     +...  ...    .....++++  ++.||++.+ 
T Consensus        83 ~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~-----g~~~--~~~----~~p~~i~~~--~~~lyv~~~~  149 (328)
T 3dsm_A           83 FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIEC-----PDMD--MES----GSTEQMVQY--GKYVYVNCWS  149 (328)
T ss_dssp             CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEEC-----TTCC--TTT----CBCCCEEEE--TTEEEEEECT
T ss_pred             CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEc-----CCcc--ccC----CCcceEEEE--CCEEEEEcCC
Confidence            1122334444677999998 67889999985 777655411     1000  000    001234555  899999974 


Q ss_pred             -CCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCC----------CEEEEEECCCCcEEEEEecCCCCCc
Q 006913          205 -QGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVR----------ALVLALDTSSGNILWHKSVGPLGSA  273 (626)
Q Consensus       205 -~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~g----------G~l~alD~~tG~~~w~~~~~~l~~~  273 (626)
                       ++.|..+|++++++.+....+.  ....++.+.+|++|+++...          +.++.+|+.++++......+. +..
T Consensus       150 ~~~~v~viD~~t~~~~~~i~~g~--~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~-g~~  226 (328)
T 3dsm_A          150 YQNRILKIDTETDKVVDELTIGI--QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL-GDW  226 (328)
T ss_dssp             TCCEEEEEETTTTEEEEEEECSS--CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT-TCC
T ss_pred             CCCEEEEEECCCCeEEEEEEcCC--CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC-CCC
Confidence             6789999999998877655432  23456778899999998543          689999999998776554431 123


Q ss_pred             eeeEEEee-CCeEEEEEcCCeEEEEcCC-CCEEEEeeccCCCCccccCceEEEEEEec-CCcEEEEE
Q 006913          274 EYAPVVDS-NGWISVGSLDGLLYSFSPS-GVLNKFSKSDTSDSVIQSSPYWFHLLGPS-IGLKAILC  337 (626)
Q Consensus       274 ~sspvvD~-dG~IWVGT~~gGLy~~d~~-g~~~~~~~~~~~~~~ilssp~V~~Il~Ds-dG~IwI~T  337 (626)
                      ...+++++ ++.+|+...  .|+.+|.. +++... .....     .......+..|. +|+||+..
T Consensus       227 p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~-~~~~~-----~~~~p~gi~vdp~~g~lyva~  285 (328)
T 3dsm_A          227 PSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVR-PFLEF-----RDTKYYGLTVNPNNGEVYVAD  285 (328)
T ss_dssp             CEEEEECTTSCEEEEESS--SEEEEETTCSSCCSS-CSBCC-----CSSCEEEEEECTTTCCEEEEE
T ss_pred             ceeEEEecCCCEEEEEcc--EEEEEECCCCceeee-eeecC-----CCCceEEEEEcCCCCeEEEEc
Confidence            45577775 467888653  89999975 443210 00000     023345777885 89999754

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.04  E-value=2.4e-07  Score=96.13  Aligned_cols=218  Identities=12%  Similarity=0.078  Sum_probs=131.9

Q ss_pred             cCeEEecC-CeEEEEE--CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC
Q 006913           81 TAPVHGGT-GEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH  157 (626)
Q Consensus        81 ~sp~iD~d-G~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~  157 (626)
                      ..|..+.+ +.+|+..  +++|+++++.++..    ..+..         ...+..+..+.+|++|+++ ..||+.+|+.
T Consensus        52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~----~~~~~---------~~~v~~i~~~~dg~l~v~~-~~gl~~~d~~  117 (326)
T 2ghs_A           52 EGPTFDPASGTAWWFNILERELHELHLASGRK----TVHAL---------PFMGSALAKISDSKQLIAS-DDGLFLRDTA  117 (326)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEE----EEEEC---------SSCEEEEEEEETTEEEEEE-TTEEEEEETT
T ss_pred             cCCeEeCCCCEEEEEECCCCEEEEEECCCCcE----EEEEC---------CCcceEEEEeCCCeEEEEE-CCCEEEEECC
Confidence            35666664 5666654  68999999987631    11211         1234556667899999998 4689999975


Q ss_pred             -CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcC-------CCeEEEEeCCCCeEEEEEcCCCCCc
Q 006913          158 -GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT-------QGELYSLSAHSPYFNWIQDLSSFDK  229 (626)
Q Consensus       158 -G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~-------~GgL~~ld~~tg~~~w~~~~~s~~~  229 (626)
                       |+.......       .    .... ......+.+|+ +|++|+++.       .++|++++  ++++.....  ....
T Consensus       118 ~g~~~~~~~~-------~----~~~~-~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~--~~~~  180 (326)
T 2ghs_A          118 TGVLTLHAEL-------E----SDLP-GNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA--DISI  180 (326)
T ss_dssp             TCCEEEEECS-------S----TTCT-TEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE--EESS
T ss_pred             CCcEEEEeeC-------C----CCCC-CCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC--CCcc
Confidence             765432210       0    0000 01124467786 899999975       36899999  456543322  1112


Q ss_pred             ceeeeeecCC-eEEEEEcCCCEEEEEECC--CC-cE----EEEEecCCCCCceeeEEEeeCCeEEEEEcC-CeEEEEcCC
Q 006913          230 AFTLTPGNNG-YLYVTIPVRALVLALDTS--SG-NI----LWHKSVGPLGSAEYAPVVDSNGWISVGSLD-GLLYSFSPS  300 (626)
Q Consensus       230 v~sI~~D~dG-~LwVGT~~gG~l~alD~~--tG-~~----~w~~~~~~l~~~~sspvvD~dG~IWVGT~~-gGLy~~d~~  300 (626)
                      ...++.+.|| .||++....+.++.++..  +| .+    .+. ...........+.+|.+|++|+++.+ ++|++++++
T Consensus       181 ~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~-~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~  259 (326)
T 2ghs_A          181 PNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFI-DSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD  259 (326)
T ss_dssp             EEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEE-ECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred             cCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEE-ECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC
Confidence            3456667777 588887555788888864  66 32    121 11111123456788999999999964 789999998


Q ss_pred             CCEEEEeeccCCCCccccCceEEEEEEe-cC-CcEEEEEe
Q 006913          301 GVLNKFSKSDTSDSVIQSSPYWFHLLGP-SI-GLKAILCL  338 (626)
Q Consensus       301 g~~~~~~~~~~~~~~ilssp~V~~Il~D-sd-G~IwI~T~  338 (626)
                      ++......        .+...+.++..+ .+ +.||+.+.
T Consensus       260 g~~~~~i~--------~~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          260 GNHIARYE--------VPGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             CCEEEEEE--------CSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             CCEEEEEE--------CCCCCcEEEEEecCCCCEEEEEec
Confidence            77654333        122345566655 44 56776543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.02  E-value=1.7e-07  Score=97.16  Aligned_cols=252  Identities=12%  Similarity=0.121  Sum_probs=151.0

Q ss_pred             ceeeeeEEeeCCEEEEEeC-C-------------------------cEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCC
Q 006913           37 FRLSKPLIGEDGKIYACSE-K-------------------------TLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTG   89 (626)
Q Consensus        37 ~~~Sspvid~dG~IwIgSd-g-------------------------gL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG   89 (626)
                      ......+++.+|+||++.. +                         .++.+|. +|++........ ......+.+|.+|
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~-~~~p~gia~d~~g  102 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNL-FYLPHGLSIDTDG  102 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTT-CSSEEEEEECTTS
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCc-cCCceEEEECCCC
Confidence            4456778889999999863 2                         4999998 688764332111 1123456788999


Q ss_pred             eEEEEE--CCeEEEEECCCCccccceeEEEecCCCCC---CCCCCeeEEEEEEc-CCeEEEEE-c-CCeEEEEeCCCcEE
Q 006913           90 EVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGSGK---GGTGAIAGIAVSTS-SSSVYINV-K-GRALFAFMTHGQLL  161 (626)
Q Consensus        90 ~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~~~---~~~~~~I~s~~~d~-dG~LwIgT-~-~gGL~a~d~~G~~~  161 (626)
                      +||++.  ++.|.++++++...    ....+......   ...-.....+..+. +|+||++. . ++.|..++++|+.+
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~----~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~  178 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEG----PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFV  178 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSC----CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEE
T ss_pred             CEEEEECCCCEEEEEeCCCCeE----EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEE
Confidence            999986  57899999876410    11222211000   00011233455666 89999997 3 67899999889887


Q ss_pred             EEECCcccccccccccccCCCCCccccceEEEcCC-CeEEEEcC-CCeEEEEeCCCCeEEEEEcCCC-CCccee------
Q 006913          162 WSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCE-GSIYISNT-QGELYSLSAHSPYFNWIQDLSS-FDKAFT------  232 (626)
Q Consensus       162 w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~d-G~LwIGT~-~GgL~~ld~~tg~~~w~~~~~s-~~~v~s------  232 (626)
                      +.+...    +... ... ...-.....+++|+ + +.||++.. ++.|.++++++|++........ ...+..      
T Consensus       179 ~~~~~~----g~~~-~~~-~~~~~~p~gia~d~-~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg  251 (329)
T 3fvz_A          179 TQWGEE----SSGS-SPR-PGQFSVPHSLALVP-HLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPG  251 (329)
T ss_dssp             EEECEE----CCSS-SCC-TTEESCEEEEEEET-TTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETT
T ss_pred             EEeccC----CCCC-CCC-CcccCCCcEEEEEC-CCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCC
Confidence            764210    0000 000 00001123467786 5 89999875 5679999999777765543221 112222      


Q ss_pred             eeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCC-CCCceeeEEEeeCCeEEEEEc-CCeEEEEcCC
Q 006913          233 LTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGP-LGSAEYAPVVDSNGWISVGSL-DGLLYSFSPS  300 (626)
Q Consensus       233 I~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~-l~~~~sspvvD~dG~IWVGT~-~gGLy~~d~~  300 (626)
                      ++.+.+|++|++......+..++..+|+.+....... .......++++++|.|||+.. ++.|.+|+.+
T Consensus       252 ~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~  321 (329)
T 3fvz_A          252 FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT  321 (329)
T ss_dssp             EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred             EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence            2333466666665445578888988998876543211 112355688899999999874 4567777653

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.99  E-value=3.4e-08  Score=101.11  Aligned_cols=229  Identities=11%  Similarity=0.136  Sum_probs=136.7

Q ss_pred             cCCceeeeeEEeeCCE--EEEEe-CCcEEEEcCCCCEEEEEeCCCCCCcccCeEEecCCeEEEEE--CCeEEEEECCCCc
Q 006913           34 RSAFRLSKPLIGEDGK--IYACS-EKTLFAFESNGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA--ENRVLKVDLLKIG  108 (626)
Q Consensus        34 ~~~~~~Sspvid~dG~--IwIgS-dggL~a~d~~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT--~ggL~~id~~~~~  108 (626)
                      ........|+.+.+|+  +|+.. .+.|++++.+|...- +....  .....+..|.+|++|+++  .++|+++++++ .
T Consensus        42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~-~~~~~--~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g-~  117 (305)
T 3dr2_A           42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDV-LLDAT--AFTNGNAVDAQQRLVHCEHGRRAITRSDADG-Q  117 (305)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCEEE-EEESC--SCEEEEEECTTSCEEEEETTTTEEEEECTTS-C
T ss_pred             cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEEE-EeCCC--CccceeeECCCCCEEEEECCCCEEEEECCCC-C
Confidence            3445556788888776  45555 568999998776431 22221  234567889999999998  46899999863 2


Q ss_pred             cccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEE-----EEc-------------CCeEEEEeCC-CcEEEEECCccc
Q 006913          109 TSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYI-----NVK-------------GRALFAFMTH-GQLLWSAGPVLD  169 (626)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwI-----gT~-------------~gGL~a~d~~-G~~~w~~~~~~~  169 (626)
                      .     ..........  ....+..+..+.+|+||+     |+.             .++|++++++ |+..... .   
T Consensus       118 ~-----~~~~~~~~~~--~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~---  186 (305)
T 3dr2_A          118 A-----HLLVGRYAGK--RLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D---  186 (305)
T ss_dssp             E-----EEEECEETTE--ECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E---
T ss_pred             E-----EEEEeccCCC--ccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c---
Confidence            1     2211110000  011223456688999999     432             2579999984 6543211 0   


Q ss_pred             ccccccccccCCCCCccccceEEEcCCC-eEEEEcCC------CeEEEEeCCCCeEEEEEcC--CCCCcceeeeeecCCe
Q 006913          170 QLGYRQGCTKTDVDCYFTSVPVIDQCEG-SIYISNTQ------GELYSLSAHSPYFNWIQDL--SSFDKAFTLTPGNNGY  240 (626)
Q Consensus       170 ~~~~~~~~~~~l~~~~i~sspviD~~dG-~LwIGT~~------GgL~~ld~~tg~~~w~~~~--~s~~~v~sI~~D~dG~  240 (626)
                       +.             ....+++++ ++ .||++...      +.|++++.+++.+.-....  ........+++|.+|+
T Consensus       187 -~~-------------~p~gl~~sp-dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~  251 (305)
T 3dr2_A          187 -LD-------------HPNGLAFSP-DEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW  251 (305)
T ss_dssp             -ES-------------SEEEEEECT-TSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC
T ss_pred             -CC-------------CCcceEEcC-CCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC
Confidence             00             012245554 44 58988664      6799988776542111110  0112234578899999


Q ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeC-CeEEEEEcCCeEEEEcC
Q 006913          241 LYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSN-GWISVGSLDGLLYSFSP  299 (626)
Q Consensus       241 LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~d-G~IWVGT~~gGLy~~d~  299 (626)
                      ||+++.  ++++.+++ +|+.+.....+.   ....++.+++ +.||+++. ++||+++.
T Consensus       252 lwv~~~--~gv~~~~~-~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~-~~l~~~~~  304 (305)
T 3dr2_A          252 LWSSSG--TGVCVFDS-DGQLLGHIPTPG---TASNCTFDQAQQRLFITGG-PCLWMLPL  304 (305)
T ss_dssp             EEECCS--SEEEEECT-TSCEEEEEECSS---CCCEEEECTTSCEEEEEET-TEEEEEEC
T ss_pred             EEEecC--CcEEEECC-CCCEEEEEECCC---ceeEEEEeCCCCEEEEEcC-CeEEEEEC
Confidence            999983  46889996 676665544432   1234555434 57999995 68999863

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=98.92  E-value=5.6e-09  Score=110.24  Aligned_cols=203  Identities=18%  Similarity=0.198  Sum_probs=115.5

Q ss_pred             CCEEEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCcc--cCeEEecCCeEEEE--E-CCeEEEEECCCCccccceeEEEec
Q 006913           47 DGKIYACS-EKTLFAFES-NGTIAWSLDLDFTCNIG--TAPVHGGTGEVYIV--A-ENRVLKVDLLKIGTSESATQVFYG  119 (626)
Q Consensus        47 dG~IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i~--~sp~iD~dG~IwVg--T-~ggL~~id~~~~~~~~~~~~~~~~  119 (626)
                      +|.|++++ +|.|+++|. +|+.+|++.........  ..+....++.+|++  + +|.|++++..++.     ..|.+.
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~-----~~~~~~   84 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGL-----QKLPLS   84 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEE-----EEEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCc-----EEeeec
Confidence            57899998 788999998 99999998654100111  01111135678877  4 7999999988763     234322


Q ss_pred             CCCCCCCCCCee-E-EEEE------EcCCeEEEEEcCCeEEEEeC-CCcEEEEECCcccccccccccccCCCCCccccce
Q 006913          120 TGSGKGGTGAIA-G-IAVS------TSSSSVYINVKGRALFAFMT-HGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVP  190 (626)
Q Consensus       120 ~~~~~~~~~~~I-~-s~~~------d~dG~LwIgT~~gGL~a~d~-~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~ssp  190 (626)
                      ... .....+.. . .++.      ..+|.+|+|+.++.|+++|. +|+.+|.+..         +.+..........++
T Consensus        85 ~~~-lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~---------~~~~~~~~~~~e~~~  154 (339)
T 2be1_A           85 IRQ-LVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP---------GSKNGYFGSQSVDCS  154 (339)
T ss_dssp             HHH-HHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST---------TCBCC----------
T ss_pred             ccc-ceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec---------CCCcccccccccccc
Confidence            100 00001111 1 1112      16889999999999999997 5999998722         111000000000011


Q ss_pred             E-E----EcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCC-----CCc-c-eeeeeecCCeEEEEEcCCCEEEEEECCC
Q 006913          191 V-I----DQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSS-----FDK-A-FTLTPGNNGYLYVTIPVRALVLALDTSS  258 (626)
Q Consensus       191 v-i----D~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s-----~~~-v-~sI~~D~dG~LwVGT~~gG~l~alD~~t  258 (626)
                      . .    |.+++.|++|.....+++.+ ++|+ .|......     ... + .......||.+++++. .+.++++|+.+
T Consensus       155 ~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~~~~-dg~v~A~d~~~  231 (339)
T 2be1_A          155 PEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIAPFR-DKSLLASDLDF  231 (339)
T ss_dssp             ----------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEEEET-TTEEEEECSTT
T ss_pred             cccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEEEECC-CCEEEEEECCC
Confidence            1 1    11367899988776666666 5566 78643221     110 0 0001123577788774 68999999999


Q ss_pred             CcEEE-EEec
Q 006913          259 GNILW-HKSV  267 (626)
Q Consensus       259 G~~~w-~~~~  267 (626)
                      |..+| +...
T Consensus       232 G~~~W~~~~l  241 (339)
T 2be1_A          232 RIARWVSPTF  241 (339)
T ss_dssp             CCEEEECCCC
T ss_pred             CcEEEEeecC
Confidence            99999 5443

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.83  E-value=2.1e-06  Score=88.79  Aligned_cols=234  Identities=12%  Similarity=0.098  Sum_probs=136.9

Q ss_pred             ccCeEEecCCeEEEEE-CC-------------------------eEEEEECCCCccccceeEEEecCCCCCCCCCCeeEE
Q 006913           80 GTAPVHGGTGEVYIVA-EN-------------------------RVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGI  133 (626)
Q Consensus        80 ~~sp~iD~dG~IwVgT-~g-------------------------gL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s  133 (626)
                      ..++.+|.+|++|++. .+                         .|+.+|+.++..     ...+...     .-.....
T Consensus        26 v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~-----~~~~~~~-----~~~~p~g   95 (329)
T 3fvz_A           26 VSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI-----LQSSGKN-----LFYLPHG   95 (329)
T ss_dssp             EEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE-----EEEECTT-----TCSSEEE
T ss_pred             ceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE-----EeccCCC-----ccCCceE
Confidence            4456778888999886 23                         488899876642     2222211     0112344


Q ss_pred             EEEEcCCeEEEEEc-CCeEEEEeCCCc--EEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEc-C-CCeE
Q 006913          134 AVSTSSSSVYINVK-GRALFAFMTHGQ--LLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISN-T-QGEL  208 (626)
Q Consensus       134 ~~~d~dG~LwIgT~-~gGL~a~d~~G~--~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT-~-~GgL  208 (626)
                      +..+.+|+||++.. ++.|..++++|+  .+......    + ..+....  .......+++++.++.||++. + ++.|
T Consensus        96 ia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~----~-~~g~~~~--~~~~P~~ia~~~~~g~lyv~d~~~~~~I  168 (329)
T 3fvz_A           96 LSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRS----M-QPGSDQN--HFCQPTDVAVEPSTGAVFVSDGYCNSRI  168 (329)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBT----T-BCCCSTT--CCSSEEEEEECTTTCCEEEEECSSCCEE
T ss_pred             EEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEeccc----C-CCCCCcc--ccCCCcEEEEeCCCCeEEEEeCCCCCeE
Confidence            56678899999865 467899998876  34433110    0 0000000  000123456773378999988 3 7889


Q ss_pred             EEEeCCCCeEEEEEcC-C--------CCCcceeeeeecC-CeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeE-
Q 006913          209 YSLSAHSPYFNWIQDL-S--------SFDKAFTLTPGNN-GYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAP-  277 (626)
Q Consensus       209 ~~ld~~tg~~~w~~~~-~--------s~~~v~sI~~D~d-G~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~ssp-  277 (626)
                      .++++++ .+.+.... +        ....+..++.+.+ |+|||+...++.+..+++.+|+.+........+.....+ 
T Consensus       169 ~~~~~~g-~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~  247 (329)
T 3fvz_A          169 VQFSPSG-KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAIS  247 (329)
T ss_dssp             EEECTTS-CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEE
T ss_pred             EEEcCCC-CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceee
Confidence            9999765 55544321 1        1123567888887 899999877789999998889887665333212112222 


Q ss_pred             -----EEeeCCeEEEEEc-CCeEEEEcC-CCCEEEEeeccCCCCccccCceEEEEEEecCCcEEEE
Q 006913          278 -----VVDSNGWISVGSL-DGLLYSFSP-SGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAIL  336 (626)
Q Consensus       278 -----vvD~dG~IWVGT~-~gGLy~~d~-~g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~  336 (626)
                           +++.+|.+|++.. +..++.++. +|+.......  ...   .......|..+.+|+||+.
T Consensus       248 ~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~--~~~---~~~~p~~ia~~~dG~lyva  308 (329)
T 3fvz_A          248 YIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKP--VRK---HFDMPHDIVASEDGTVYIG  308 (329)
T ss_dssp             EETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECC--SSS---CCSSEEEEEECTTSEEEEE
T ss_pred             ecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcC--CCC---ccCCeeEEEECCCCCEEEE
Confidence                 3333566665543 336888885 4766554321  111   1223457888999999864

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.73  E-value=1.9e-05  Score=80.44  Aligned_cols=223  Identities=14%  Similarity=0.109  Sum_probs=138.8

Q ss_pred             eeeEEeeCCE-EEEEe--CCcEEEEcC-CCCEEEEEeCCCCCC-------cccCeEEecCCe-EEEEE---CCeEEEEEC
Q 006913           40 SKPLIGEDGK-IYACS--EKTLFAFES-NGTIAWSLDLDFTCN-------IGTAPVHGGTGE-VYIVA---ENRVLKVDL  104 (626)
Q Consensus        40 Sspvid~dG~-IwIgS--dggL~a~d~-~G~~~W~~~~~~~~~-------i~~sp~iD~dG~-IwVgT---~ggL~~id~  104 (626)
                      ..+.++.+|. +|++.  ++.+..+|. +++..+.+.......       ....+.++.+|+ +|++.   ++.|+.+|.
T Consensus        92 ~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~  171 (353)
T 3vgz_A           92 FGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDG  171 (353)
T ss_dssp             CSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEET
T ss_pred             ceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcC
Confidence            3445656665 88876  467999998 888877766532110       023456677765 78776   466999999


Q ss_pred             CCCccccceeEEEecCCCCCCCCCCeeEEEEEE-cCCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCC
Q 006913          105 LKIGTSESATQVFYGTGSGKGGTGAIAGIAVST-SSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDV  182 (626)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d-~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~  182 (626)
                      .++.     ....+...      +.....+... .+..||++..++.|+.+|.. ++..+....     + .    ..  
T Consensus       172 ~~~~-----~~~~~~~~------~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~-----~-~----~~--  228 (353)
T 3vgz_A          172 GNIK-----LKTAIQNT------GKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKL-----L-D----DG--  228 (353)
T ss_dssp             TTTE-----EEEEECCC------CTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEEC-----C-C----SS--
T ss_pred             CCCc-----eEEEecCC------CCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEc-----C-C----CC--
Confidence            8763     22222211      1111222233 44568888888889999975 877765410     0 0    00  


Q ss_pred             CCccccceEEEcCCCeEEEEcCC-CeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCe-EEEEEcCCCEEEEEECCCCc
Q 006913          183 DCYFTSVPVIDQCEGSIYISNTQ-GELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGY-LYVTIPVRALVLALDTSSGN  260 (626)
Q Consensus       183 ~~~i~sspviD~~dG~LwIGT~~-GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~-LwVGT~~gG~l~alD~~tG~  260 (626)
                      .......+.+++.++.||++... +.|+.+|..+++.......+.   ...+..+.+|+ +|++...++.+..+|..+++
T Consensus       229 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~  305 (353)
T 3vgz_A          229 KEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYK  305 (353)
T ss_dssp             SCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred             CCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC---CceEEECCCCCEEEEEECCCCeEEEEECCCCe
Confidence            00112234566524568888764 789999999988876655332   23455666775 99988666899999999998


Q ss_pred             EEEEEecCCCCCceeeEEEeeCCe-EEEEEcC
Q 006913          261 ILWHKSVGPLGSAEYAPVVDSNGW-ISVGSLD  291 (626)
Q Consensus       261 ~~w~~~~~~l~~~~sspvvD~dG~-IWVGT~~  291 (626)
                      .......+   .....+.++++|. ||++..+
T Consensus       306 ~~~~~~~~---~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          306 VVKTFDTP---THPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             EEEEEECC---SEEEEEEECTTSCEEEEEEEC
T ss_pred             EEEEEecC---CCCCeEEEcCCCCEEEEEEcc
Confidence            87665543   1345567777775 8887754

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=98.72  E-value=2.5e-08  Score=105.29  Aligned_cols=197  Identities=8%  Similarity=0.015  Sum_probs=115.9

Q ss_pred             CCeEEEEE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEE--EEEcCCeEEEE--EcCCeEEEEeCC-CcEE
Q 006913           88 TGEVYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIA--VSTSSSSVYIN--VKGRALFAFMTH-GQLL  161 (626)
Q Consensus        88 dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~--~~d~dG~LwIg--T~~gGL~a~d~~-G~~~  161 (626)
                      +|.+|++| +|.|+++|..+++     ..|.+....    ....+...  ....++.+|++  +.++.|++++.. |...
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~-----~~W~~~~~~----~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~   80 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGH-----IIWSIEPEN----FQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK   80 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTE-----EEEEECGGG----SCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCc-----EEEEecCCc----cCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE
Confidence            46899999 8999999999885     467664320    01111110  00136678877  568999999975 8777


Q ss_pred             EEECCcccccccccccccCCCCCccccceEEE------cCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCC------c
Q 006913          162 WSAGPVLDQLGYRQGCTKTDVDCYFTSVPVID------QCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFD------K  229 (626)
Q Consensus       162 w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD------~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~------~  229 (626)
                      |....     + ..   ...+.......|+++      . +|.||+|+.+|.++++|..+|+..|....+...      .
T Consensus        81 ~~~~~-----~-~l---v~~SP~~~~~~pvv~~~~~~~~-~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~  150 (339)
T 2be1_A           81 LPLSI-----R-QL---VSTSPLHLKTNIVVNDSGKIVE-DEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQS  150 (339)
T ss_dssp             EEEEH-----H-HH---HTTCSEEEECC----------C-CEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC------
T ss_pred             eeecc-----c-cc---eeccccccCCCceeeccccccc-CCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccc
Confidence            76411     0 00   000000002334451      3 789999999999999999999999997654211      1


Q ss_pred             ceeeee------ecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCC--CCc----eeeEEEeeCCeEEEEEcCCeEEEE
Q 006913          230 AFTLTP------GNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPL--GSA----EYAPVVDSNGWISVGSLDGLLYSF  297 (626)
Q Consensus       230 v~sI~~------D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l--~~~----~sspvvD~dG~IWVGT~~gGLy~~  297 (626)
                      ..+...      +.++.|++|... ..+.+.+ ++|+ .|.......  ...    ........+|.+++++.++.|+++
T Consensus       151 e~~~~~~d~~~d~~~~~v~ig~~~-y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~~~~dg~v~A~  227 (339)
T 2be1_A          151 VDCSPEEKIKLQECENMIVIGKTI-FELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIAPFRDKSLLAS  227 (339)
T ss_dssp             --------------CCEEEEEEEE-EECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEEEETTTEEEEE
T ss_pred             cccccccccccccCCCeEEEecce-EEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEEEECCCCEEEEE
Confidence            111111      235789998743 3555556 6787 785432200  000    000111235778899999999999


Q ss_pred             cCC-CCEEEE
Q 006913          298 SPS-GVLNKF  306 (626)
Q Consensus       298 d~~-g~~~~~  306 (626)
                      |+. |+.+|+
T Consensus       228 d~~~G~~~W~  237 (339)
T 2be1_A          228 DLDFRIARWV  237 (339)
T ss_dssp             CSTTCCEEEE
T ss_pred             ECCCCcEEEE
Confidence            985 889884

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=98.60  E-value=8.5e-06  Score=86.66  Aligned_cols=226  Identities=10%  Similarity=0.053  Sum_probs=126.4

Q ss_pred             EecCCeEEEEECCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEc--CCeEEEEEcCC----eEEEEeCCC
Q 006913           85 HGGTGEVYIVAENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTS--SSSVYINVKGR----ALFAFMTHG  158 (626)
Q Consensus        85 iD~dG~IwVgT~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~--dG~LwIgT~~g----GL~a~d~~G  158 (626)
                      .|+++.||+||..|+++++...+..     .|....   .......+..+..+.  ++.||+++..+    ||++.+..|
T Consensus        19 ~d~~g~l~vgt~~Gl~~~~~~~~g~-----~W~~~~---~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G   90 (394)
T 3b7f_A           19 ESGPVMLLVATIKGAWFLASDPARR-----TWELRG---PVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGG   90 (394)
T ss_dssp             CCSCCEEEEEETTEEEEEEECTTSC-----SEEEEE---EESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTT
T ss_pred             CCCCCEEEEEecCceEEEECCCCCC-----CceECC---ccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCC
Confidence            4678999999988899987654211     222100   001234566777776  78999999876    788765545


Q ss_pred             cEEEEECCcccccccccccccCCC-----CCccccceEEEcC--CCeEEEEcCCCeEEEEeCCCCeEEEEEcC-----C-
Q 006913          159 QLLWSAGPVLDQLGYRQGCTKTDV-----DCYFTSVPVIDQC--EGSIYISNTQGELYSLSAHSPYFNWIQDL-----S-  225 (626)
Q Consensus       159 ~~~w~~~~~~~~~~~~~~~~~~l~-----~~~i~sspviD~~--dG~LwIGT~~GgL~~ld~~tg~~~w~~~~-----~-  225 (626)
                      + .|..-..  ...+    .....     ......++++++.  .+.||+++..++|++.+-.+.  .|..-.     + 
T Consensus        91 ~-tW~~~~~--~~~~----~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~--tW~~~~~~~~~p~  161 (394)
T 3b7f_A           91 G-NWTEATR--PPAF----NKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGA--SWEPVAGFNDHPM  161 (394)
T ss_dssp             S-CCEECSB--CCCC----CCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESSTTS--BCEECHHHHTCTT
T ss_pred             C-CceECCc--cccC----CCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCC--CeEECcCccCCcc
Confidence            4 4653110  0000    00000     0001123455521  588999998889998754332  354321     0 


Q ss_pred             -------------CCCcceeeeeec--CCeEEEEEcCCCEEEEEECCCCcEEEEEecCCC------------CCceeeEE
Q 006913          226 -------------SFDKAFTLTPGN--NGYLYVTIPVRALVLALDTSSGNILWHKSVGPL------------GSAEYAPV  278 (626)
Q Consensus       226 -------------s~~~v~sI~~D~--dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l------------~~~~sspv  278 (626)
                                   ....+.++++|.  .++||+++.. +.++..+  ++-..|.......            +..+..++
T Consensus       162 ~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~-ggl~~s~--DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~  238 (394)
T 3b7f_A          162 RRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSS-GGVFEST--DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVV  238 (394)
T ss_dssp             HHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEET-BEEEEES--STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEE
T ss_pred             ccccccccccCCCCCCceeEEEECCCCCCEEEEEECC-CCEEEEC--CCCCCceECCCCccccccCCCccccCcceeEEE
Confidence                         012345677764  5789999853 5676654  3334565322110            11245567


Q ss_pred             EeeC--CeEEEEEcCCeEEEEcCCCCEEEEeeccCCCCccccC---ceEEEEEEe--cCCcEEEEE
Q 006913          279 VDSN--GWISVGSLDGLLYSFSPSGVLNKFSKSDTSDSVIQSS---PYWFHLLGP--SIGLKAILC  337 (626)
Q Consensus       279 vD~d--G~IWVGT~~gGLy~~d~~g~~~~~~~~~~~~~~ilss---p~V~~Il~D--sdG~IwI~T  337 (626)
                      ++++  +.||+++ .++||+.+..|+. |.....   .  ++.   ..++.|.++  ..+.||+++
T Consensus       239 ~~~~~~~~l~vg~-~~gl~~s~D~G~t-W~~~~~---~--l~~~~~~~~~~i~~~p~~~~~l~~~t  297 (394)
T 3b7f_A          239 QHPAAPDILYQQN-HCGIYRMDRREGV-WKRIGD---A--MPREVGDIGFPIVVHQRDPRTVWVFP  297 (394)
T ss_dssp             ECSSSTTEEEEEE-TTEEEEEETTTTE-EECGGG---G--SCTTTCSCEEEEEECSSCTTCEEEEE
T ss_pred             ECCCCCCEEEEEc-CCeEEEeCCCCCc-ceECCC---C--CCCCCccceEEEEECCCCCCEEEEEe
Confidence            7765  8999998 4689988766654 322210   0  122   345677776  568899876

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.59  E-value=0.00023  Score=74.97  Aligned_cols=252  Identities=11%  Similarity=0.051  Sum_probs=151.9

Q ss_pred             eeEEeeCCEEEEEe--CCcEEEEcC-CCCEEEEEeCC---CCCCcccCeEEecCCeEEEEE--CCeEEEEECCCCccccc
Q 006913           41 KPLIGEDGKIYACS--EKTLFAFES-NGTIAWSLDLD---FTCNIGTAPVHGGTGEVYIVA--ENRVLKVDLLKIGTSES  112 (626)
Q Consensus        41 spvid~dG~IwIgS--dggL~a~d~-~G~~~W~~~~~---~~~~i~~sp~iD~dG~IwVgT--~ggL~~id~~~~~~~~~  112 (626)
                      .+....++.++++.  ++.+..+|. +|+........   .....+.++....+|.+|++.  ++.|..+|..++..   
T Consensus       127 ~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~---  203 (433)
T 3bws_A          127 SVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAY---  203 (433)
T ss_dssp             CCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCE---
T ss_pred             EEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceE---
Confidence            44555578888876  446999998 67765422211   101223345566788888876  68999999877531   


Q ss_pred             eeEEEecCCCCCCCCCCeeEEEEEEcCC-eEEEEE-cCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccc
Q 006913          113 ATQVFYGTGSGKGGTGAIAGIAVSTSSS-SVYINV-KGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSV  189 (626)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~I~s~~~d~dG-~LwIgT-~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~ss  189 (626)
                        ...+..     . ...+..+....++ .++++. .++.|..+|.. ++.......                ... ...
T Consensus       204 --~~~~~~-----~-~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~----------------~~~-~~~  258 (433)
T 3bws_A          204 --KATVDL-----T-GKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK----------------IGL-PRG  258 (433)
T ss_dssp             --EEEEEC-----S-SSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC----------------CSE-EEE
T ss_pred             --EEEEcC-----C-CCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC----------------CCC-ceE
Confidence              222211     1 1233444444444 566665 46789999975 766554310                001 133


Q ss_pred             eEEEcCCCeEEEEcC--------CCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCC-eEEEEEcCCCEEEEEECCCCc
Q 006913          190 PVIDQCEGSIYISNT--------QGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNG-YLYVTIPVRALVLALDTSSGN  260 (626)
Q Consensus       190 pviD~~dG~LwIGT~--------~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG-~LwVGT~~gG~l~alD~~tG~  260 (626)
                      +..++.+..||++..        ++.|+.+|.++++.........  .+..++.+.+| .+|+.....+.+..+|..+++
T Consensus       259 ~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~  336 (433)
T 3bws_A          259 LLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG--NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK  336 (433)
T ss_dssp             EEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE--CEEEEEECSSTTEEEEEETTTTEEEEEETTTTE
T ss_pred             EEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC--CcceEEECCCCCEEEEEecCCCEEEEEECCCCc
Confidence            455542447888773        6789999999887765532111  23455666677 688876667899999998888


Q ss_pred             EEEEEecCCCCCceeeEEEeeCC-eEEEEEcC---------------CeEEEEcCC-CCEEEEeeccCCCCccccCceEE
Q 006913          261 ILWHKSVGPLGSAEYAPVVDSNG-WISVGSLD---------------GLLYSFSPS-GVLNKFSKSDTSDSVIQSSPYWF  323 (626)
Q Consensus       261 ~~w~~~~~~l~~~~sspvvD~dG-~IWVGT~~---------------gGLy~~d~~-g~~~~~~~~~~~~~~ilssp~V~  323 (626)
                      ........   .....+...++| .+|+++.+               |.|+.+|.. ++.......         ...+.
T Consensus       337 ~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~---------~~~~~  404 (433)
T 3bws_A          337 VQKSIPVF---DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA---------GNQPT  404 (433)
T ss_dssp             EEEEEECS---SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC---------SSSEE
T ss_pred             EEEEecCC---CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC---------CCCCc
Confidence            87665433   224557777777 48888763               589999974 555443331         11234


Q ss_pred             EEEEecCCcEE
Q 006913          324 HLLGPSIGLKA  334 (626)
Q Consensus       324 ~Il~DsdG~Iw  334 (626)
                      .+....+|...
T Consensus       405 ~~~~s~dg~~l  415 (433)
T 3bws_A          405 GLDVSPDNRYL  415 (433)
T ss_dssp             EEEECTTSCEE
T ss_pred             eEEEcCCCCEE
Confidence            55566666544

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=98.54  E-value=9.5e-06  Score=86.30  Aligned_cols=232  Identities=13%  Similarity=0.124  Sum_probs=124.0

Q ss_pred             EeeCCEEEEEeCCcEEEEcC-CCCEEEEEeC-CCCCCcccCeEEec--CCeEEEEE-CC----eEEEEECCCCcccccee
Q 006913           44 IGEDGKIYACSEKTLFAFES-NGTIAWSLDL-DFTCNIGTAPVHGG--TGEVYIVA-EN----RVLKVDLLKIGTSESAT  114 (626)
Q Consensus        44 id~dG~IwIgSdggL~a~d~-~G~~~W~~~~-~~~~~i~~sp~iD~--dG~IwVgT-~g----gL~~id~~~~~~~~~~~  114 (626)
                      +|.+|.||+|+..||+.++. ++...|.... ......+.++++|.  +++||+++ .+    +|++.+..+.       
T Consensus        19 ~d~~g~l~vgt~~Gl~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~-------   91 (394)
T 3b7f_A           19 ESGPVMLLVATIKGAWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGG-------   91 (394)
T ss_dssp             CCSCCEEEEEETTEEEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTS-------
T ss_pred             CCCCCEEEEEecCceEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCC-------
Confidence            55789999999888998886 3222454321 01113456778886  78999998 45    7888754443       


Q ss_pred             EEEecCCCC--CCC-------CCCeeEEEEEEc---CCeEEEEEcCCeEEEEeCCCcEEEEECCcccccccc----cccc
Q 006913          115 QVFYGTGSG--KGG-------TGAIAGIAVSTS---SSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYR----QGCT  178 (626)
Q Consensus       115 ~~~~~~~~~--~~~-------~~~~I~s~~~d~---dG~LwIgT~~gGL~a~d~~G~~~w~~~~~~~~~~~~----~~~~  178 (626)
                      .|.......  ...       ....+..+..+.   .+.||+++..+||++.+..|+. |..-......+.+    .+..
T Consensus        92 tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~t-W~~~~~~~~~p~~~~~~~~~~  170 (394)
T 3b7f_A           92 NWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGAS-WEPVAGFNDHPMRRAWTGGEQ  170 (394)
T ss_dssp             CCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESSTTSB-CEECHHHHTCTTHHHHHCCC-
T ss_pred             CceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCC-eEECcCccCCccccccccccc
Confidence            222111000  000       112344444442   7899999988899888655653 7531100000000    0000


Q ss_pred             c-CCCCCccccceEEEc-CCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCC--C-----------CcceeeeeecC--CeE
Q 006913          179 K-TDVDCYFTSVPVIDQ-CEGSIYISNTQGELYSLSAHSPYFNWIQDLSS--F-----------DKAFTLTPGNN--GYL  241 (626)
Q Consensus       179 ~-~l~~~~i~sspviD~-~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s--~-----------~~v~sI~~D~d--G~L  241 (626)
                      . ...... ...+.+|+ ..+.||+++..++|++.+-.+  ..|......  .           ..+.+++.+.+  +.|
T Consensus       171 ~g~~~~~~-i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG--~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l  247 (394)
T 3b7f_A          171 DGTPDGPK-MHSILVDPRDPKHLYIGMSSGGVFESTDAG--TDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDIL  247 (394)
T ss_dssp             ---CCCCE-EEEEEECTTCTTCEEEEEETBEEEEESSTT--SSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEE
T ss_pred             cCCCCCCc-eeEEEECCCCCCEEEEEECCCCEEEECCCC--CCceECCCCccccccCCCccccCcceeEEEECCCCCCEE
Confidence            0 000011 13455663 147899998888888875433  346532110  0           12456677654  899


Q ss_pred             EEEEcCCCEEEEEECCCCcEEEEEecCCC-C---CceeeEEEe--eCCeEEEEEc
Q 006913          242 YVTIPVRALVLALDTSSGNILWHKSVGPL-G---SAEYAPVVD--SNGWISVGSL  290 (626)
Q Consensus       242 wVGT~~gG~l~alD~~tG~~~w~~~~~~l-~---~~~sspvvD--~dG~IWVGT~  290 (626)
                      |+++.  +.++..+  ++...|......+ .   .....+.++  ..+.||+++.
T Consensus       248 ~vg~~--~gl~~s~--D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~  298 (394)
T 3b7f_A          248 YQQNH--CGIYRMD--RREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPM  298 (394)
T ss_dssp             EEEET--TEEEEEE--TTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEEC
T ss_pred             EEEcC--CeEEEeC--CCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEec
Confidence            99984  4676665  3334665422111 1   223345665  4689999974

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.48  E-value=9.5e-05  Score=75.59  Aligned_cols=229  Identities=11%  Similarity=0.057  Sum_probs=129.7

Q ss_pred             ceeeeeEEeeCCEEEEEe--CCcEEEEcCCCCEEEEEeCCCCCCcccCeEEecCCeEEEEE--CCe--EEEEECCCCccc
Q 006913           37 FRLSKPLIGEDGKIYACS--EKTLFAFESNGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA--ENR--VLKVDLLKIGTS  110 (626)
Q Consensus        37 ~~~Sspvid~dG~IwIgS--dggL~a~d~~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT--~gg--L~~id~~~~~~~  110 (626)
                      .....++++.+|+||++.  .+.|+++|.+|.........   .....+.++.+|++|++.  .++  |+.++..++.. 
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~---~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~-  107 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVE---GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV-  107 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECS---SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE-
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCC---CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE-
Confidence            345678888899999986  56899999977654323332   234456778899999986  334  88888766532 


Q ss_pred             cceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEc-CCeEEEEeCC-Cc-EEEEECCcccccccccccccCCCCCccc
Q 006913          111 ESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVK-GRALFAFMTH-GQ-LLWSAGPVLDQLGYRQGCTKTDVDCYFT  187 (626)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~-~gGL~a~d~~-G~-~~w~~~~~~~~~~~~~~~~~~l~~~~i~  187 (626)
                          ........     ......+....++.+|+... .+.|+++|+. ++ .++.....+.. .  . ....+.   ..
T Consensus       108 ----~~~~~~~~-----~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~-~--~-~~~~~~---~p  171 (306)
T 2p4o_A          108 ----ETLLTLPD-----AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLAR-S--N-SESVFP---AA  171 (306)
T ss_dssp             ----EEEEECTT-----CSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSC-S--S-TTCCSC---SE
T ss_pred             ----EEEEeCCC-----ccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCcccc-c--c-ccCCCC---cC
Confidence                21111110     11112223345677888764 5789999986 42 23322110000 0  0 000000   01


Q ss_pred             cceEEEcCCCeEEEEcC-CCeEEEEeCCC-CeE---EEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEE
Q 006913          188 SVPVIDQCEGSIYISNT-QGELYSLSAHS-PYF---NWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNIL  262 (626)
Q Consensus       188 sspviD~~dG~LwIGT~-~GgL~~ld~~t-g~~---~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~  262 (626)
                      ..+..|  ++.||++.. .+.|++++.++ +.+   ......   .....++.|.+|+|||+...++.+..+++ +|+..
T Consensus       172 ngis~d--g~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~---~~P~gi~vd~dG~l~va~~~~~~V~~~~~-~G~~~  245 (306)
T 2p4o_A          172 NGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ---TNIDDFAFDVEGNLYGATHIYNSVVRIAP-DRSTT  245 (306)
T ss_dssp             EEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES---CCCSSEEEBTTCCEEEECBTTCCEEEECT-TCCEE
T ss_pred             CCcCcC--CCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc---CCCCCeEECCCCCEEEEeCCCCeEEEECC-CCCEE
Confidence            112223  568999865 56799998764 332   111111   12345788999999999876678999996 47664


Q ss_pred             EEEecCCCCCceeeEEEe---eC-CeEEEEEcC
Q 006913          263 WHKSVGPLGSAEYAPVVD---SN-GWISVGSLD  291 (626)
Q Consensus       263 w~~~~~~l~~~~sspvvD---~d-G~IWVGT~~  291 (626)
                      .............+++++   ++ ++|||.+..
T Consensus       246 ~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          246 IIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             EEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             EEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence            321121001224556665   34 689998853

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=98.47  E-value=0.0011  Score=68.74  Aligned_cols=238  Identities=12%  Similarity=0.086  Sum_probs=143.5

Q ss_pred             EEEEEe--CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCe-EEEEE--CCeEEEEECCCCccccceeEEEecCCC
Q 006913           49 KIYACS--EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGE-VYIVA--ENRVLKVDLLKIGTSESATQVFYGTGS  122 (626)
Q Consensus        49 ~IwIgS--dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~-IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~  122 (626)
                      .+++..  ++.|..+|. +++....+....   ...++....+|. |+++.  ++.|..+|..++..     ...+..  
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-----~~~~~~--   72 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGS---NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-----IATVPA--   72 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSS---SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-----EEEEEC--
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCC---CcceEEECCCCCEEEEECCCCCeEEEEECCCCeE-----EEEEEC--
Confidence            456644  567899997 777766554432   234566677776 55654  68899999877632     222211  


Q ss_pred             CCCCCCCeeEEEEEEcCC-eEEEEEc-CCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeE
Q 006913          123 GKGGTGAIAGIAVSTSSS-SVYINVK-GRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSI  199 (626)
Q Consensus       123 ~~~~~~~~I~s~~~d~dG-~LwIgT~-~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~L  199 (626)
                           ...+..+....++ .|+++.. ++.|..+|.. ++.......     +           .. ...+...+.+..|
T Consensus        73 -----~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-----~-----------~~-~~~~~~s~dg~~l  130 (391)
T 1l0q_A           73 -----GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-----G-----------KS-PLGLALSPDGKKL  130 (391)
T ss_dssp             -----SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-----S-----------SS-EEEEEECTTSSEE
T ss_pred             -----CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-----C-----------CC-cceEEECCCCCEE
Confidence                 1133444444444 5777654 4789999975 666554310     0           01 1334555423447


Q ss_pred             EE-EcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCC-eEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeE
Q 006913          200 YI-SNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNG-YLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAP  277 (626)
Q Consensus       200 wI-GT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG-~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~ssp  277 (626)
                      |+ +..++.|+.+|..+++.........  .+..+....+| .||+....++.++.+|..+++........   .....+
T Consensus       131 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~~~  205 (391)
T 1l0q_A          131 YVTNNGDKTVSVINTVTKAVINTVSVGR--SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE---AAPSGI  205 (391)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECCS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS---SEEEEE
T ss_pred             EEEeCCCCEEEEEECCCCcEEEEEecCC--CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecC---CCccce
Confidence            54 4457889999999988776544322  23455666666 57777656678999999888776555433   223446


Q ss_pred             EEeeCC-eEEEEE---cCCeEEEEcCC-CCEEEEeeccCCCCccccCceEEEEEEecCCc
Q 006913          278 VVDSNG-WISVGS---LDGLLYSFSPS-GVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGL  332 (626)
Q Consensus       278 vvD~dG-~IWVGT---~~gGLy~~d~~-g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~  332 (626)
                      ...++| .||+++   .++.|+.+|.. ++.......         ...+..+....+|.
T Consensus       206 ~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~---------~~~~~~~~~s~dg~  256 (391)
T 1l0q_A          206 AVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV---------GPDPAGIAVTPDGK  256 (391)
T ss_dssp             EECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC---------CSSEEEEEECTTSS
T ss_pred             EECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEec---------CCCccEEEEccCCC
Confidence            666666 688887   57899999975 554443331         11234555666665

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.45  E-value=0.00017  Score=77.52  Aligned_cols=229  Identities=14%  Similarity=0.099  Sum_probs=133.8

Q ss_pred             CeEEecCCeEEEEE--CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcC-CeEEEEEcCC--eEEEEeC
Q 006913           82 APVHGGTGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSS-SSVYINVKGR--ALFAFMT  156 (626)
Q Consensus        82 sp~iD~dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~d-G~LwIgT~~g--GL~a~d~  156 (626)
                      .+.+|.+|+||++.  ++.|.++|++++..     .......      . ... +..+.+ +.||++...+  .|+.+++
T Consensus       135 ~la~d~~g~lyv~d~~~~~I~~id~~~g~~-----~~~~~~~------~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~  201 (409)
T 3hrp_A          135 GIAAVGNNTVLAYQRDDPRVRLISVDDNKV-----TTVHPGF------K-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMK  201 (409)
T ss_dssp             EEEECSTTEEEEEETTTTEEEEEETTTTEE-----EEEEETC------C-BCB-CEECTTSSEEEEEBSSTTCEEEEEEG
T ss_pred             EEEEeCCCCEEEEecCCCcEEEEECCCCEE-----EEeeccC------C-CCc-eeEecCCCcEEEEecCCCceEEEEEc
Confidence            45678899999987  47899999987632     1111110      1 111 333444 4577776644  7999997


Q ss_pred             C-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCC---CCCcc-e
Q 006913          157 H-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLS---SFDKA-F  231 (626)
Q Consensus       157 ~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~---s~~~v-~  231 (626)
                      . +......+.    .. .    ...  . ....+++++.++.||+...++.|+++|++++.........   ..... .
T Consensus       202 ~~~~~~~~~g~----~~-~----~~~--~-~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~  269 (409)
T 3hrp_A          202 ASGWAPTRIGQ----LG-S----TFS--G-KIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPG  269 (409)
T ss_dssp             GGTTCEEEEEE----CC-T----TSC--S-CCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSC
T ss_pred             CCCceeEEeee----cc-c----hhc--C-CcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCcc
Confidence            5 332111100    00 0    000  0 1133566643789999877778999999987665442211   11111 3


Q ss_pred             -eeeeec-CCeEEEEEcCCCEEEEEECCCCcEEEEEecC---CC---------CCceeeEEEeeCCeEEEEEc--CCeEE
Q 006913          232 -TLTPGN-NGYLYVTIPVRALVLALDTSSGNILWHKSVG---PL---------GSAEYAPVVDSNGWISVGSL--DGLLY  295 (626)
Q Consensus       232 -sI~~D~-dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~---~l---------~~~~sspvvD~dG~IWVGT~--~gGLy  295 (626)
                       .++.+. +|+||++....+.++.++. +|.........   ..         -.....++++++|+||++..  ++.|.
T Consensus       270 ~~ia~~p~~g~lyv~d~~~~~I~~~~~-~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~  348 (409)
T 3hrp_A          270 PYLIYYFVDSNFYMSDQNLSSVYKITP-DGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLR  348 (409)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEECT-TCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEE
T ss_pred             ccEEEeCCCCEEEEEeCCCCEEEEEec-CCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEE
Confidence             677887 6899999877788999985 45543222111   00         01245678899999999975  56899


Q ss_pred             EEc-CCCCEEEEeeccC----CCCcc--ccCceEEEEEEecCCcEEEE
Q 006913          296 SFS-PSGVLNKFSKSDT----SDSVI--QSSPYWFHLLGPSIGLKAIL  336 (626)
Q Consensus       296 ~~d-~~g~~~~~~~~~~----~~~~i--lssp~V~~Il~DsdG~IwI~  336 (626)
                      +++ ++|.+........    .++..  ..-.....|..|.+|+||+.
T Consensus       349 ~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVa  396 (409)
T 3hrp_A          349 KLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIA  396 (409)
T ss_dssp             EEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEE
T ss_pred             EEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEE
Confidence            999 6776654433100    01000  00122457888999999964

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.42  E-value=0.00023  Score=72.73  Aligned_cols=217  Identities=11%  Similarity=0.076  Sum_probs=126.8

Q ss_pred             cCeEEecCCeEEEEE--CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcC-C--eEEEEe
Q 006913           81 TAPVHGGTGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKG-R--ALFAFM  155 (626)
Q Consensus        81 ~sp~iD~dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~-g--GL~a~d  155 (626)
                      ..+.+|.+|+||++.  ++.|+++++++..      ...+..       ......+..+.+|+||++... +  .|+.++
T Consensus        35 egia~~~~g~lyv~d~~~~~I~~~d~~g~~------~~~~~~-------~~~p~gia~~~dG~l~vad~~~~~~~v~~~d  101 (306)
T 2p4o_A           35 ENLASAPDGTIFVTNHEVGEIVSITPDGNQ------QIHATV-------EGKVSGLAFTSNGDLVATGWNADSIPVVSLV  101 (306)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTTCCE------EEEEEC-------SSEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred             ceEEECCCCCEEEEeCCCCeEEEECCCCce------EEEEeC-------CCCceeEEEcCCCcEEEEeccCCcceEEEEc
Confidence            356778889999987  6889999987642      111111       113344566788999998753 2  388888


Q ss_pred             C-CCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcC-CCeEEEEeCCCCeE-EEEEcC--------
Q 006913          156 T-HGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT-QGELYSLSAHSPYF-NWIQDL--------  224 (626)
Q Consensus       156 ~-~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~-~GgL~~ld~~tg~~-~w~~~~--------  224 (626)
                      . +|++......     +      .    ..+...++... ++.+|+... .+.|+++|+.++.. .+....        
T Consensus       102 ~~~g~~~~~~~~-----~------~----~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~  165 (306)
T 2p4o_A          102 KSDGTVETLLTL-----P------D----AIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSE  165 (306)
T ss_dssp             CTTSCEEEEEEC-----T------T----CSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTT
T ss_pred             CCCCeEEEEEeC-----C------C----ccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCcccccccc
Confidence            5 5776432210     0      0    00111223343 677888764 78899999987643 232110        


Q ss_pred             CCCCcceeeeeecCCeEEEEEcCCCEEEEEECCC-CcE----EEEEecCCCCCceeeEEEeeCCeEEEEEc-CCeEEEEc
Q 006913          225 SSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSS-GNI----LWHKSVGPLGSAEYAPVVDSNGWISVGSL-DGLLYSFS  298 (626)
Q Consensus       225 ~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~t-G~~----~w~~~~~~l~~~~sspvvD~dG~IWVGT~-~gGLy~~d  298 (626)
                      ........+..| .+.||++......++.++... |..    .+. ...    ....+++|++|+||++.. ++.|.+|+
T Consensus       166 ~~~~~pngis~d-g~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~----~P~gi~vd~dG~l~va~~~~~~V~~~~  239 (306)
T 2p4o_A          166 SVFPAANGLKRF-GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQT----NIDDFAFDVEGNLYGATHIYNSVVRIA  239 (306)
T ss_dssp             CCSCSEEEEEEE-TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESC----CCSSEEEBTTCCEEEECBTTCCEEEEC
T ss_pred             CCCCcCCCcCcC-CCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccC----CCCCeEECCCCCEEEEeCCCCeEEEEC
Confidence            111122334222 458999987677899888653 432    111 111    123478899999999985 46899999


Q ss_pred             CCCCEEEEeeccCCCCccccCceEEEEEEe---cC-CcEEEEEe
Q 006913          299 PSGVLNKFSKSDTSDSVIQSSPYWFHLLGP---SI-GLKAILCL  338 (626)
Q Consensus       299 ~~g~~~~~~~~~~~~~~ilssp~V~~Il~D---sd-G~IwI~T~  338 (626)
                      ++|+........      .......++..+   .+ +.||+.+.
T Consensus       240 ~~G~~~~~~~~~------~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          240 PDRSTTIIAQAE------QGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             TTCCEEEEECGG------GTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             CCCCEEEEeecc------cccCCceEEEEecccCCCCEEEEECC
Confidence            988764332210      111223456554   44 67886553

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.39  E-value=0.00031  Score=75.45  Aligned_cols=238  Identities=11%  Similarity=0.077  Sum_probs=138.2

Q ss_pred             eeeeeEEeeCCEEEEEe--CCcEEEEcCC-CCEEEEEeCCCCCCcccCeEEecCCe-EEEEE-CC--eEEEEECCCCccc
Q 006913           38 RLSKPLIGEDGKIYACS--EKTLFAFESN-GTIAWSLDLDFTCNIGTAPVHGGTGE-VYIVA-EN--RVLKVDLLKIGTS  110 (626)
Q Consensus        38 ~~Sspvid~dG~IwIgS--dggL~a~d~~-G~~~W~~~~~~~~~i~~sp~iD~dG~-IwVgT-~g--gL~~id~~~~~~~  110 (626)
                      .-..+++|.+|+||++.  ++.|.++|.+ +.+...... .  .... +.++.+|+ ||++. ++  .|+.+++.++.. 
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~--~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~-  206 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-F--KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA-  206 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-C--CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC-
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-C--CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce-
Confidence            34566788899999987  3679999984 554321222 1  1223 67777776 66665 33  799999876421 


Q ss_pred             cceeEEEecCCCCCCCCCCeeEEEEEEc-CCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCcccc
Q 006913          111 ESATQVFYGTGSGKGGTGAIAGIAVSTS-SSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTS  188 (626)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~I~s~~~d~-dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~s  188 (626)
                          ...........  ......+..+. +|.||++..++.|+.++++ +........     + ..   ... ......
T Consensus       207 ----~~~~g~~~~~~--~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~-----~-~~---g~~-~~~P~~  270 (409)
T 3hrp_A          207 ----PTRIGQLGSTF--SGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQL-----E-LS---GSL-GTNPGP  270 (409)
T ss_dssp             ----EEEEEECCTTS--CSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEEC-----C-CC---SCC-CCSSCC
T ss_pred             ----eEEeeeccchh--cCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecc-----c-cc---CCC-CCCccc
Confidence                11111000000  11122334455 8999997665669999986 543322100     0 00   000 000001


Q ss_pred             ceEEEcCCCeEEEEcC-CCeEEEEeCCCCeEEEEEcCC---C----------CCcceeeeeecCCeEEEEEc-CCCEEEE
Q 006913          189 VPVIDQCEGSIYISNT-QGELYSLSAHSPYFNWIQDLS---S----------FDKAFTLTPGNNGYLYVTIP-VRALVLA  253 (626)
Q Consensus       189 spviD~~dG~LwIGT~-~GgL~~ld~~tg~~~w~~~~~---s----------~~~v~sI~~D~dG~LwVGT~-~gG~l~a  253 (626)
                      .+++++.++.||++.. ++.|++++.++. ........   +          +.....++.|.+|+|||+.. .+..+..
T Consensus       271 ~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~  349 (409)
T 3hrp_A          271 YLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRK  349 (409)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEE
T ss_pred             cEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEE
Confidence            4677753689999865 567999998874 33222111   0          23355788899999999987 7789999


Q ss_pred             EECCCCcEEEEEecCC-C-----------CCceeeEEEeeCCeEEEEEcC-CeEEEE
Q 006913          254 LDTSSGNILWHKSVGP-L-----------GSAEYAPVVDSNGWISVGSLD-GLLYSF  297 (626)
Q Consensus       254 lD~~tG~~~w~~~~~~-l-----------~~~~sspvvD~dG~IWVGT~~-gGLy~~  297 (626)
                      ++..+|.+......+. .           -.....+++|++|+|||+... +.|.++
T Consensus       350 ~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i  406 (409)
T 3hrp_A          350 LDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKY  406 (409)
T ss_dssp             EETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEE
T ss_pred             EECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEE
Confidence            9977887654332210 0           012456788988999998754 344444

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.26  E-value=0.0017  Score=68.27  Aligned_cols=224  Identities=15%  Similarity=0.160  Sum_probs=137.0

Q ss_pred             eeeEEeeCCEEEEEe--CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCe-EEEEE--CCeEEEEECCCCccccce
Q 006913           40 SKPLIGEDGKIYACS--EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGE-VYIVA--ENRVLKVDLLKIGTSESA  113 (626)
Q Consensus        40 Sspvid~dG~IwIgS--dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~-IwVgT--~ggL~~id~~~~~~~~~~  113 (626)
                      .......+|.+|++.  ++.+..+|. +++..+.+....  .....+..+.+|. ++++.  ++.|..+|..++.     
T Consensus       173 ~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~-----  245 (433)
T 3bws_A          173 ETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTG--KWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL-----  245 (433)
T ss_dssp             EEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSS--SSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE-----
T ss_pred             eEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCC--CCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc-----
Confidence            334555688888865  578999997 777776554322  2334556667766 55555  5789999987753     


Q ss_pred             eEEEecCCCCCCCCCCeeEEEEEEcCC-eEEEEEc--------CCeEEEEeCC-CcEEEEECCcccccccccccccCCCC
Q 006913          114 TQVFYGTGSGKGGTGAIAGIAVSTSSS-SVYINVK--------GRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVD  183 (626)
Q Consensus       114 ~~~~~~~~~~~~~~~~~I~s~~~d~dG-~LwIgT~--------~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~  183 (626)
                      ....+..       ...+..+....+| .|++++.        ++.|+.+|.. ++.......     .           
T Consensus       246 ~~~~~~~-------~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~-----~-----------  302 (433)
T 3bws_A          246 EIRKTDK-------IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP-----P-----------  302 (433)
T ss_dssp             EEEECCC-------CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE-----E-----------
T ss_pred             EEEEecC-------CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccC-----C-----------
Confidence            1122111       1223444445555 6888774        5578899975 666543200     0           


Q ss_pred             CccccceEEEcCCCeEEEE-cCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCC-eEEEEEcC--------------
Q 006913          184 CYFTSVPVIDQCEGSIYIS-NTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNG-YLYVTIPV--------------  247 (626)
Q Consensus       184 ~~i~sspviD~~dG~LwIG-T~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG-~LwVGT~~--------------  247 (626)
                      .. ...+..++.+..+|+. ..++.|..+|.++++........  ..+..++...+| .||++...              
T Consensus       303 ~~-~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~  379 (433)
T 3bws_A          303 GN-KRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVF--DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLV  379 (433)
T ss_dssp             EC-EEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSS
T ss_pred             CC-cceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCC--CCCCeEEEcCCCCEEEEEecCCCcccccccccccc
Confidence            00 1234455413367776 56888999999998877654422  235566777777 58887743              


Q ss_pred             CCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCC-eEEEEEc-CCeEEEEcC
Q 006913          248 RALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNG-WISVGSL-DGLLYSFSP  299 (626)
Q Consensus       248 gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG-~IWVGT~-~gGLy~~d~  299 (626)
                      .|.++.+|..+++........   .....+..+++| .|++++. ++.|..++.
T Consensus       380 dg~v~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~  430 (433)
T 3bws_A          380 LGKVYVIDTTTDTVKEFWEAG---NQPTGLDVSPDNRYLVISDFLDHQIRVYRR  430 (433)
T ss_dssp             CCEEEEEETTTTEEEEEEECS---SSEEEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred             ceEEEEEECCCCcEEEEecCC---CCCceEEEcCCCCEEEEEECCCCeEEEEEe
Confidence            248999999899877655443   234556677676 4566664 677777754

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.24  E-value=0.0027  Score=65.58  Aligned_cols=236  Identities=11%  Similarity=0.038  Sum_probs=138.3

Q ss_pred             eeeeeEEeeCCEE-EEEe-CCcEEEEcCCCCEEEEEeCCCCCCcccCeEEecCCe-EEEEE-CCeEEEEECCCCccccce
Q 006913           38 RLSKPLIGEDGKI-YACS-EKTLFAFESNGTIAWSLDLDFTCNIGTAPVHGGTGE-VYIVA-ENRVLKVDLLKIGTSESA  113 (626)
Q Consensus        38 ~~Sspvid~dG~I-wIgS-dggL~a~d~~G~~~W~~~~~~~~~i~~sp~iD~dG~-IwVgT-~ggL~~id~~~~~~~~~~  113 (626)
                      ....+....+|.+ .+|+ ++.+..++.++.....+....  ..+.++....++. |+.++ ++.|..+|..++..    
T Consensus       110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----  183 (425)
T 1r5m_A          110 QVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHR--APIVSVKWNKDGTHIISMDVENVTILWNVISGTV----  183 (425)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCC--SCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE----
T ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCC--ccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE----
Confidence            3444455456654 4455 566888887777665543221  2344556666676 44455 78899999877531    


Q ss_pred             eEEEecCCCCC---------CCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCC
Q 006913          114 TQVFYGTGSGK---------GGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVD  183 (626)
Q Consensus       114 ~~~~~~~~~~~---------~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~  183 (626)
                       ...+......         ...+..+..+....++.+++++.++.|..+|.. ++....+..            .   .
T Consensus       184 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~------------~---~  247 (425)
T 1r5m_A          184 -MQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIG------------H---H  247 (425)
T ss_dssp             -EEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECC------------C---S
T ss_pred             -EEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeecc------------C---C
Confidence             1112111000         000001333334467888899888889999975 554433200            0   0


Q ss_pred             CccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEE
Q 006913          184 CYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILW  263 (626)
Q Consensus       184 ~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w  263 (626)
                      .. ...+...+.+..|+.++.++.|..+|.++++....... ....+.++....+|.++.++ ..+.+..+|..+++...
T Consensus       248 ~~-i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~  324 (425)
T 1r5m_A          248 GP-ISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYG-HSQSIVSASWVGDDKVISCS-MDGSVRLWSLKQNTLLA  324 (425)
T ss_dssp             SC-EEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECC-CSSCEEEEEEETTTEEEEEE-TTSEEEEEETTTTEEEE
T ss_pred             Cc-eEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecC-CCccEEEEEECCCCEEEEEe-CCCcEEEEECCCCcEeE
Confidence            11 13344554244677888888899999888665443321 12245666666777666666 45789999998888776


Q ss_pred             EEecCCCCCceeeEEEeeCC-eEEEEEcCCeEEEEcCC
Q 006913          264 HKSVGPLGSAEYAPVVDSNG-WISVGSLDGLLYSFSPS  300 (626)
Q Consensus       264 ~~~~~~l~~~~sspvvD~dG-~IWVGT~~gGLy~~d~~  300 (626)
                      ......  ..+..+...++| .|.+|+.++.|..++..
T Consensus       325 ~~~~~~--~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~  360 (425)
T 1r5m_A          325 LSIVDG--VPIFAGRISQDGQKYAVAFMDGQVNVYDLK  360 (425)
T ss_dssp             EEECTT--CCEEEEEECTTSSEEEEEETTSCEEEEECH
T ss_pred             ecccCC--ccEEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence            654321  234556666565 57778888889999864

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.21  E-value=0.0012  Score=66.20  Aligned_cols=228  Identities=11%  Similarity=0.030  Sum_probs=123.9

Q ss_pred             EEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCC-eEEEEE--CCeEEEEECCCCccccceeEEEecCCCCC
Q 006913           50 IYACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTG-EVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGSGK  124 (626)
Q Consensus        50 IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG-~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~~~  124 (626)
                      +..++ ++.|..+|. +++..+.+..+........+..+.+| .+|++.  ++.|..+|..++..     ...+..... 
T Consensus         4 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-----~~~~~~~~~-   77 (337)
T 1pby_B            4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET-----LGRIDLSTP-   77 (337)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE-----EEEEECCBT-
T ss_pred             EEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe-----EeeEEcCCc-
Confidence            33444 678999998 78777666554310023466777888 577776  57899999887642     211211100 


Q ss_pred             CCCCCeeEEEEEEcCC-eEEEEE------------cCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccce
Q 006913          125 GGTGAIAGIAVSTSSS-SVYINV------------KGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVP  190 (626)
Q Consensus       125 ~~~~~~I~s~~~d~dG-~LwIgT------------~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~ssp  190 (626)
                      ...+..+..+....+| .||++.            .++.|..+|.. ++..+....     +           .. ...+
T Consensus        78 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-----~-----------~~-~~~~  140 (337)
T 1pby_B           78 EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-----P-----------RQ-ITML  140 (337)
T ss_dssp             TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-----C-----------SS-CCCE
T ss_pred             ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-----C-----------CC-ccee
Confidence            0000011122334555 688875            35789999975 666554310     0           00 1234


Q ss_pred             EEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCC-eEEEEEcCCC--------------------
Q 006913          191 VIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNG-YLYVTIPVRA--------------------  249 (626)
Q Consensus       191 viD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG-~LwVGT~~gG--------------------  249 (626)
                      ...+.+..||++  ++.|+.+|.++++...............+  ..|| .||+....++                    
T Consensus       141 ~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~--s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (337)
T 1pby_B          141 AWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYA--QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTA  216 (337)
T ss_dssp             EECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBC--CCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGG
T ss_pred             EECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCcee--CCCccEEeeeccCCCceeeeeeccccccccccccc
Confidence            555423448887  46799999999887655443221111111  2223 3444332111                    


Q ss_pred             ---EEEEEECCCCcEEEEEecCCCCCceeeEEEeeCC-eEEEEEcCCeEEEEcCC-CCEEEEe
Q 006913          250 ---LVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNG-WISVGSLDGLLYSFSPS-GVLNKFS  307 (626)
Q Consensus       250 ---~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG-~IWVGT~~gGLy~~d~~-g~~~~~~  307 (626)
                         .++.+|..+++.. .....+.......+..+++| .+|++  ++.|+.+|.. ++.....
T Consensus       217 ~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~  276 (337)
T 1pby_B          217 YRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV  276 (337)
T ss_dssp             EEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEE
T ss_pred             cccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCccee
Confidence               4678898888775 22222111223446677676 46666  5899999975 5554443

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=98.20  E-value=0.0063  Score=60.13  Aligned_cols=256  Identities=12%  Similarity=0.031  Sum_probs=145.3

Q ss_pred             CceeeeeEEeeCCEEEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEE-EE-CCeEEEEECCCCcccc
Q 006913           36 AFRLSKPLIGEDGKIYACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYI-VA-ENRVLKVDLLKIGTSE  111 (626)
Q Consensus        36 ~~~~Sspvid~dG~IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwV-gT-~ggL~~id~~~~~~~~  111 (626)
                      ..+.+-.. ..++.|..++ ++.+..+|. ++..........  ..+.++....++.+.+ ++ ++.+..++........
T Consensus        19 ~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~   95 (313)
T 3odt_A           19 QDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQ--GFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGED   95 (313)
T ss_dssp             SCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECS--SCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSC
T ss_pred             CCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCC--ccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCC
Confidence            34444333 3455666676 566888886 554433332211  2344555666776544 45 6777777765432100


Q ss_pred             ceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccceE
Q 006913          112 SATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPV  191 (626)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspv  191 (626)
                        ....+.     .... .+..+.. .++.+..++.++.+..+| .++.......            .   ...+ ....
T Consensus        96 --~~~~~~-----~~~~-~i~~~~~-~~~~l~~~~~d~~i~~~d-~~~~~~~~~~------------~---~~~v-~~~~  149 (313)
T 3odt_A           96 --PLYTLI-----GHQG-NVCSLSF-QDGVVISGSWDKTAKVWK-EGSLVYNLQA------------H---NASV-WDAK  149 (313)
T ss_dssp             --C-CEEC-----CCSS-CEEEEEE-ETTEEEEEETTSEEEEEE-TTEEEEEEEC------------C---SSCE-EEEE
T ss_pred             --cccchh-----hccc-CEEEEEe-cCCEEEEEeCCCCEEEEc-CCcEEEeccc------------C---CCce-eEEE
Confidence              011111     1112 3333333 566788888888888888 4444443200            0   0111 1122


Q ss_pred             E-EcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCC
Q 006913          192 I-DQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPL  270 (626)
Q Consensus       192 i-D~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l  270 (626)
                      . ...++.+..++.++.|..+|..  +............+.++....++.+.+++. ++.+..+|..+++........  
T Consensus       150 ~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-dg~i~i~d~~~~~~~~~~~~~--  224 (313)
T 3odt_A          150 VVSFSENKFLTASADKTIKLWQND--KVIKTFSGIHNDVVRHLAVVDDGHFISCSN-DGLIKLVDMHTGDVLRTYEGH--  224 (313)
T ss_dssp             EEETTTTEEEEEETTSCEEEEETT--EEEEEECSSCSSCEEEEEEEETTEEEEEET-TSEEEEEETTTCCEEEEEECC--
T ss_pred             EccCCCCEEEEEECCCCEEEEecC--ceEEEEeccCcccEEEEEEcCCCeEEEccC-CCeEEEEECCchhhhhhhhcC--
Confidence            2 2126778888888999999843  333222221223456667777888777774 578999999989887665432  


Q ss_pred             CCceeeEEEeeCCeEEEEEcCCeEEEEcCC-CCEEEEeeccCCCCccccCceEEEEEEecCCcE
Q 006913          271 GSAEYAPVVDSNGWISVGSLDGLLYSFSPS-GVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLK  333 (626)
Q Consensus       271 ~~~~sspvvD~dG~IWVGT~~gGLy~~d~~-g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~I  333 (626)
                      ...+..+...++|.+..|+.++.|..+|.. ++.......        ....|.++....+|.+
T Consensus       225 ~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~  280 (313)
T 3odt_A          225 ESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITL--------PAISIWSVDCMSNGDI  280 (313)
T ss_dssp             SSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEEC--------SSSCEEEEEECTTSCE
T ss_pred             CceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEec--------cCceEEEEEEccCCCE
Confidence            123556777778899999999999999964 665544331        1223555666666664

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=98.18  E-value=0.0035  Score=64.82  Aligned_cols=230  Identities=13%  Similarity=0.136  Sum_probs=140.7

Q ss_pred             eeeeEEeeCCE-EEEEe--CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCe-EEEEE--CCeEEEEECCCCcccc
Q 006913           39 LSKPLIGEDGK-IYACS--EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGE-VYIVA--ENRVLKVDLLKIGTSE  111 (626)
Q Consensus        39 ~Sspvid~dG~-IwIgS--dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~-IwVgT--~ggL~~id~~~~~~~~  111 (626)
                      ...+....+|. |+++.  ++.|..+|. +++..+.+....   ....+..+.+|+ |+++.  ++.|..+|..++..  
T Consensus        34 ~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~---~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~--  108 (391)
T 1l0q_A           34 PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS---SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV--  108 (391)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE--
T ss_pred             cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC---CccceEECCCCCEEEEEECCCCEEEEEECCCCeE--
Confidence            45566666775 65653  678999997 788776665432   234556666766 66665  58899999987631  


Q ss_pred             ceeEEEecCCCCCCCCCCeeEEEEEEcCC-eEEEEE-cCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCcccc
Q 006913          112 SATQVFYGTGSGKGGTGAIAGIAVSTSSS-SVYINV-KGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTS  188 (626)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~I~s~~~d~dG-~LwIgT-~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~s  188 (626)
                         ...+..       ...+..+....+| .||+.. .++.|+.+|.. ++.......     +           .. ..
T Consensus       109 ---~~~~~~-------~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-----~-----------~~-~~  161 (391)
T 1l0q_A          109 ---AGTVKT-------GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-----G-----------RS-PK  161 (391)
T ss_dssp             ---EEEEEC-------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-----C-----------SS-EE
T ss_pred             ---EEEEeC-------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec-----C-----------CC-cc
Confidence               222211       1123334444555 475554 46788999975 766554310     0           01 12


Q ss_pred             ceEEEcCCCeEEEE-cCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCC-eEEEEEc--CCCEEEEEECCCCcEEEE
Q 006913          189 VPVIDQCEGSIYIS-NTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNG-YLYVTIP--VRALVLALDTSSGNILWH  264 (626)
Q Consensus       189 spviD~~dG~LwIG-T~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG-~LwVGT~--~gG~l~alD~~tG~~~w~  264 (626)
                      .+...+.+..||+. ..++.|+.+|.++++........  ..+..+....+| .||++..  ..+.+..+|..+++....
T Consensus       162 ~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~  239 (391)
T 1l0q_A          162 GIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE--AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITAR  239 (391)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS--SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEE
T ss_pred             eEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecC--CCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEE
Confidence            34455424467665 45678999999998776544322  234455666666 6787764  357899999988887765


Q ss_pred             EecCCCCCceeeEEEeeCC-eEEEE-EcCCeEEEEcCC-CCEEE
Q 006913          265 KSVGPLGSAEYAPVVDSNG-WISVG-SLDGLLYSFSPS-GVLNK  305 (626)
Q Consensus       265 ~~~~~l~~~~sspvvD~dG-~IWVG-T~~gGLy~~d~~-g~~~~  305 (626)
                      .....   ....+..+++| .||++ ..++.|..+|.. ++...
T Consensus       240 ~~~~~---~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~  280 (391)
T 1l0q_A          240 IPVGP---DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITA  280 (391)
T ss_dssp             EECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EecCC---CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEE
Confidence            54432   23456677677 57776 457889999975 55544

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.18  E-value=0.0018  Score=64.82  Aligned_cols=231  Identities=13%  Similarity=0.107  Sum_probs=133.2

Q ss_pred             eeeeEEeeCC-EEEEEe--CCcEEEEcC-CCCEEEEEeCCCCC---CcccCeEEecCC-eEEEEE-------------CC
Q 006913           39 LSKPLIGEDG-KIYACS--EKTLFAFES-NGTIAWSLDLDFTC---NIGTAPVHGGTG-EVYIVA-------------EN   97 (626)
Q Consensus        39 ~Sspvid~dG-~IwIgS--dggL~a~d~-~G~~~W~~~~~~~~---~i~~sp~iD~dG-~IwVgT-------------~g   97 (626)
                      ...+.++.+| .+|++.  ++.|+.+|. +++..+.+......   .....+..+.+| .+|++.             ++
T Consensus        36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~  115 (337)
T 1pby_B           36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPT  115 (337)
T ss_dssp             CCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCC
T ss_pred             ccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCc
Confidence            3456676777 677765  457999998 78877666543200   023456677777 577773             47


Q ss_pred             eEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCe-EEEEEcCCeEEEEeCC-CcEEEEECCccccccccc
Q 006913           98 RVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSS-VYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQ  175 (626)
Q Consensus        98 gL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~-LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~  175 (626)
                      .|+.+|..++..     ...+...       ..+..+....+|+ |+++  ++.|+.+|.. ++.......  ....   
T Consensus       116 ~i~v~d~~~~~~-----~~~~~~~-------~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~--~~~~---  176 (337)
T 1pby_B          116 RVALYDAETLSR-----RKAFEAP-------RQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPI--QSWE---  176 (337)
T ss_dssp             EEEEEETTTTEE-----EEEEECC-------SSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECS--TTTT---
T ss_pred             eEEEEECCCCcE-----EEEEeCC-------CCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeec--cccC---
Confidence            899999877531     2222111       1112233445555 7776  5679999975 766554311  0000   


Q ss_pred             ccccCCCCCccccceEEEcCCCeEEEEcC--------------CC----------eEEEEeCCCCeEEEEEcCC-CCCcc
Q 006913          176 GCTKTDVDCYFTSVPVIDQCEGSIYISNT--------------QG----------ELYSLSAHSPYFNWIQDLS-SFDKA  230 (626)
Q Consensus       176 ~~~~~l~~~~i~sspviD~~dG~LwIGT~--------------~G----------gL~~ld~~tg~~~w~~~~~-s~~~v  230 (626)
                         ..     .    ...+.+..||+...              .+          .|+.+|.++++.. ..... ....+
T Consensus       177 ---~~-----~----~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~  243 (337)
T 1pby_B          177 ---AE-----T----YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFY  243 (337)
T ss_dssp             ---TT-----T----BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCE
T ss_pred             ---CC-----c----eeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCCCCCce
Confidence               00     0    00100222333221              11          4789999988775 22211 11233


Q ss_pred             eeeeeecCC-eEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCC-eEEEEEcCCeEEEEcCC-CCEEEEe
Q 006913          231 FTLTPGNNG-YLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNG-WISVGSLDGLLYSFSPS-GVLNKFS  307 (626)
Q Consensus       231 ~sI~~D~dG-~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG-~IWVGT~~gGLy~~d~~-g~~~~~~  307 (626)
                      ..+..+.|| .||++   .+.++.+|..+++.......+.   ....+..+++| .||++..++.|..+|.. ++.....
T Consensus       244 ~~~~~s~dg~~l~~~---~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~  317 (337)
T 1pby_B          244 FSTAVNPAKTRAFGA---YNVLESFDLEKNASIKRVPLPH---SYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQV  317 (337)
T ss_dssp             EEEEECTTSSEEEEE---ESEEEEEETTTTEEEEEEECSS---CCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEE
T ss_pred             eeEEECCCCCEEEEe---CCeEEEEECCCCcCcceecCCC---ceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEE
Confidence            456666677 57776   2688899999998876655431   23446677676 58998888899999974 6655543

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.17  E-value=0.0026  Score=63.11  Aligned_cols=198  Identities=11%  Similarity=0.016  Sum_probs=119.6

Q ss_pred             eeeEEee-CCEEEEEe--CCcEEEEcCCCCEEEEEeCCCCCCcccCeEEec-CCeEEEEE--CCeEEEEECCCCccccce
Q 006913           40 SKPLIGE-DGKIYACS--EKTLFAFESNGTIAWSLDLDFTCNIGTAPVHGG-TGEVYIVA--ENRVLKVDLLKIGTSESA  113 (626)
Q Consensus        40 Sspvid~-dG~IwIgS--dggL~a~d~~G~~~W~~~~~~~~~i~~sp~iD~-dG~IwVgT--~ggL~~id~~~~~~~~~~  113 (626)
                      ..+++|. ++.||++.  .+.+++++.+|.......... ......+.+|. .+.||++.  .+.|.+++.++..     
T Consensus        39 ~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~-~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-----  112 (267)
T 1npe_A           39 IGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD-LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-----  112 (267)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT-CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-----
T ss_pred             EEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECC-CCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-----
Confidence            4566775 67899986  457999998554221121111 11234567776 57899987  5789999987532     


Q ss_pred             eEEEecCCCCCCCCCCeeEEEEEEc-CCeEEEEEcC---CeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccc
Q 006913          114 TQVFYGTGSGKGGTGAIAGIAVSTS-SSSVYINVKG---RALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSV  189 (626)
Q Consensus       114 ~~~~~~~~~~~~~~~~~I~s~~~d~-dG~LwIgT~~---gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~ss  189 (626)
                      ........     .... ..+..+. +++||++...   +.|++++.+|...-...        ..    ..   .....
T Consensus       113 ~~~~~~~~-----~~~P-~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~--------~~----~~---~~P~g  171 (267)
T 1npe_A          113 RRVLFDTG-----LVNP-RGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILA--------QD----NL---GLPNG  171 (267)
T ss_dssp             CEEEECSS-----CSSE-EEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEE--------CT----TC---SCEEE
T ss_pred             EEEEEECC-----CCCc-cEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEE--------EC----CC---CCCcE
Confidence            11221110     0112 3344565 7899998754   56888888764321110        00    00   01234


Q ss_pred             eEEEcCCCeEEEEcC-CCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEec
Q 006913          190 PVIDQCEGSIYISNT-QGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSV  267 (626)
Q Consensus       190 pviD~~dG~LwIGT~-~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~  267 (626)
                      +++|..++.||++.. .+.|++++.+++.......  .......++.| ++.||++...++.+..+|+.+|+..-....
T Consensus       172 ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~--~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~  247 (267)
T 1npe_A          172 LTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE--GLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHP  247 (267)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE--CCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECC
T ss_pred             EEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec--CCCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEcc
Confidence            567753578998876 4689999998754433222  12234566777 789999987778999999988987655443

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.15  E-value=0.0074  Score=62.23  Aligned_cols=209  Identities=8%  Similarity=-0.072  Sum_probs=117.8

Q ss_pred             ccCeEEecCCeEEE-EE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCC-eEEEEEcCCeEEEEeC
Q 006913           80 GTAPVHGGTGEVYI-VA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSS-SVYINVKGRALFAFMT  156 (626)
Q Consensus        80 ~~sp~iD~dG~IwV-gT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG-~LwIgT~~gGL~a~d~  156 (626)
                      +.++....+|.+.+ ++ ++.|..++..+.      ....+..     . ...+..+....++ .|+.++.++.+..+|.
T Consensus       111 v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~------~~~~~~~-----~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  178 (425)
T 1r5m_A          111 VTCLAWSHDGNSIVTGVENGELRLWNKTGA------LLNVLNF-----H-RAPIVSVKWNKDGTHIISMDVENVTILWNV  178 (425)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTSC------EEEEECC-----C-CSCEEEEEECTTSSEEEEEETTCCEEEEET
T ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEeCCCC------eeeeccC-----C-CccEEEEEECCCCCEEEEEecCCeEEEEEC
Confidence            44555666776444 45 677888884442      1222211     1 1234444444444 5777788888999997


Q ss_pred             C-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeee
Q 006913          157 H-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTP  235 (626)
Q Consensus       157 ~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~  235 (626)
                      . ++....+...... ..................+...+ ++.+++++.++.|+.+|.++++....... ....+.++..
T Consensus       179 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~i~~~d~~~~~~~~~~~~-~~~~i~~~~~  255 (425)
T 1r5m_A          179 ISGTVMQHFELKETG-GSSINAENHSGDGSLGVDVEWVD-DDKFVIPGPKGAIFVYQITEKTPTGKLIG-HHGPISVLEF  255 (425)
T ss_dssp             TTTEEEEEECCC----------------CCCBSCCEEEE-TTEEEEECGGGCEEEEETTCSSCSEEECC-CSSCEEEEEE
T ss_pred             CCCcEEEEeeccccC-ccceeeccccCCcceeeEEEEcC-CCEEEEEcCCCeEEEEEcCCCceeeeecc-CCCceEEEEE
Confidence            4 7665543110000 00000000000000023344454 78899999999999999988765443321 1234556666


Q ss_pred             ecCC-eEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEEEEEcCCeEEEEcCC-CCEEEE
Q 006913          236 GNNG-YLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPS-GVLNKF  306 (626)
Q Consensus       236 D~dG-~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~-g~~~~~  306 (626)
                      ..++ .|.+++ ..+.+..+|..+++........  ...+..+...+++.++.++.++.|..+|.. ++....
T Consensus       256 ~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  325 (425)
T 1r5m_A          256 NDTNKLLLSAS-DDGTLRIWHGGNGNSQNCFYGH--SQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLAL  325 (425)
T ss_dssp             ETTTTEEEEEE-TTSCEEEECSSSBSCSEEECCC--SSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             CCCCCEEEEEc-CCCEEEEEECCCCccceEecCC--CccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEe
Confidence            6666 455555 4567888888777665544322  123455677777888889999999999975 554443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.10  E-value=0.0068  Score=59.99  Aligned_cols=222  Identities=7%  Similarity=-0.067  Sum_probs=128.5

Q ss_pred             EEEEeCCcEEEEcCCCCE--------EEEEeCCCCCCcccCeEEec-CCeEEEEE--CCeEEEEECCCCccccceeEEEe
Q 006913           50 IYACSEKTLFAFESNGTI--------AWSLDLDFTCNIGTAPVHGG-TGEVYIVA--ENRVLKVDLLKIGTSESATQVFY  118 (626)
Q Consensus        50 IwIgSdggL~a~d~~G~~--------~W~~~~~~~~~i~~sp~iD~-dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~  118 (626)
                      ||++..+.+++++.+|..        ......    .....+.+|. ++.||++.  .+.|+++++++...     ....
T Consensus         4 l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~----~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-----~~~~   74 (267)
T 1npe_A            4 LLFAQTGKIERLPLERNTMKKTEAKAFLHIPA----KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-----TTII   74 (267)
T ss_dssp             EEEEEEEEEEEEEESSSCBCGGGCEEEEEEEE----EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-----EEEE
T ss_pred             EEEEcCCeEEEEEecCcccccccceeeecCCC----CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-----EEEE
Confidence            555555567777764431        111110    1123566776 57899987  57899999876521     1111


Q ss_pred             cCCCCCCCCCCeeEEEEEEc-CCeEEEEEcC-CeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccceEEEcCC
Q 006913          119 GTGSGKGGTGAIAGIAVSTS-SSSVYINVKG-RALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCE  196 (626)
Q Consensus       119 ~~~~~~~~~~~~I~s~~~d~-dG~LwIgT~~-gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~d  196 (626)
                      ..     ... ....+..+. +++||++... +.|..++.+|...-...        ..    ..   .....+++|+.+
T Consensus        75 ~~-----~~~-~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~--------~~----~~---~~P~~i~vd~~~  133 (267)
T 1npe_A           75 RQ-----DLG-SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLF--------DT----GL---VNPRGIVTDPVR  133 (267)
T ss_dssp             CT-----TCC-CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE--------CS----SC---SSEEEEEEETTT
T ss_pred             EC-----CCC-CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEE--------EC----CC---CCccEEEEeeCC
Confidence            11     001 223344554 6899998654 67888988754321110        00    00   011335677536


Q ss_pred             CeEEEEcCC---CeEEEEeCCCCeEEEEEcCCCCCcceeeeeecC-CeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCC
Q 006913          197 GSIYISNTQ---GELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNN-GYLYVTIPVRALVLALDTSSGNILWHKSVGPLGS  272 (626)
Q Consensus       197 G~LwIGT~~---GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~d-G~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~  272 (626)
                      +.||++...   +.|++++.++......... .......++.|.+ ++||++....+.+..+|..++....... .  ..
T Consensus       134 g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~-~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~-~--~~  209 (267)
T 1npe_A          134 GNLYWTDWNRDNPKIETSHMDGTNRRILAQD-NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE-G--LQ  209 (267)
T ss_dssp             TEEEEEECCSSSCEEEEEETTSCCCEEEECT-TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE-C--CC
T ss_pred             CEEEEEECCCCCcEEEEEecCCCCcEEEEEC-CCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec-C--CC
Confidence            899998753   5788988876443222211 2233556788874 6899998777899999975433322222 1  11


Q ss_pred             ceeeEEEeeCCeEEEEEc-CCeEEEEcCC-CCEEEE
Q 006913          273 AEYAPVVDSNGWISVGSL-DGLLYSFSPS-GVLNKF  306 (626)
Q Consensus       273 ~~sspvvD~dG~IWVGT~-~gGLy~~d~~-g~~~~~  306 (626)
                      ....+..| ++.||++.. ++.|+++++. |+....
T Consensus       210 ~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~  244 (267)
T 1npe_A          210 YPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDT  244 (267)
T ss_dssp             SEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEE
Confidence            23446667 789999885 4689999985 665443

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.10  E-value=0.011  Score=59.01  Aligned_cols=236  Identities=11%  Similarity=-0.011  Sum_probs=132.7

Q ss_pred             eeeeEEeeCCEEEE-EeCCcEEEEcC-CCCE---EEEEeCCCCCCcccCeEEecCCe-EEEEE-CCeEEEEECCCCcccc
Q 006913           39 LSKPLIGEDGKIYA-CSEKTLFAFES-NGTI---AWSLDLDFTCNIGTAPVHGGTGE-VYIVA-ENRVLKVDLLKIGTSE  111 (626)
Q Consensus        39 ~Sspvid~dG~IwI-gSdggL~a~d~-~G~~---~W~~~~~~~~~i~~sp~iD~dG~-IwVgT-~ggL~~id~~~~~~~~  111 (626)
                      ...+....+|.+.+ ++++.+..++. ++..   ............+.++....+++ +++++ ++.|..++..++..  
T Consensus        54 v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~--  131 (337)
T 1gxr_A           54 VCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP--  131 (337)
T ss_dssp             CCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC----
T ss_pred             eEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCc--
Confidence            34445545665544 45667778876 3321   11111111112344555666776 44555 67888899876531  


Q ss_pred             ceeEEEecCCCCCCCCCCeeEEEEEEcC-CeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccc
Q 006913          112 SATQVFYGTGSGKGGTGAIAGIAVSTSS-SSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSV  189 (626)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~I~s~~~d~d-G~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~ss  189 (626)
                       .....+..     . ...+..+....+ ..|+.++.++.+..+|.. ++.......            +   ... ...
T Consensus       132 -~~~~~~~~-----~-~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~------------~---~~~-i~~  188 (337)
T 1gxr_A          132 -RIKAELTS-----S-APACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG------------H---TDG-ASC  188 (337)
T ss_dssp             -EEEEEEEC-----S-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC------------C---SSC-EEE
T ss_pred             -ceeeeccc-----C-CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeec------------c---cCc-eEE
Confidence             01111111     1 123344333434 467778888889999975 665544310            0   011 133


Q ss_pred             eEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCe-EEEEEcCCCEEEEEECCCCcEEEEEecC
Q 006913          190 PVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGY-LYVTIPVRALVLALDTSSGNILWHKSVG  268 (626)
Q Consensus       190 pviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~-LwVGT~~gG~l~alD~~tG~~~w~~~~~  268 (626)
                      +...+.+..|+.++.++.|..+|.++++........  ..+.++....+|. |.+++ ..+.+..+|..+++........
T Consensus       189 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~-~~~~i~~~~~~~~~~~~~~~~~  265 (337)
T 1gxr_A          189 IDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT--SQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNKPDKYQLHLHE  265 (337)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS--SCEEEEEECTTSSEEEEEE-TTSCEEEEETTSSCEEEECCCS
T ss_pred             EEECCCCCEEEEEecCCcEEEEECCCCceEeeecCC--CceEEEEECCCCCEEEEEc-CCCcEEEEECCCCCeEEEcCCc
Confidence            444432456788888999999999988776554322  2345566666664 55555 4578888898887764322211


Q ss_pred             CCCCceeeEEEeeCCe-EEEEEcCCeEEEEcCC-CCEEE
Q 006913          269 PLGSAEYAPVVDSNGW-ISVGSLDGLLYSFSPS-GVLNK  305 (626)
Q Consensus       269 ~l~~~~sspvvD~dG~-IWVGT~~gGLy~~d~~-g~~~~  305 (626)
                         ..+..+...++|. +..++.++.|..++.. ++...
T Consensus       266 ---~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~  301 (337)
T 1gxr_A          266 ---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF  301 (337)
T ss_dssp             ---SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             ---cceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEE
Confidence               2345566666654 7777888889999964 55543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.08  E-value=0.018  Score=60.98  Aligned_cols=246  Identities=9%  Similarity=0.043  Sum_probs=137.6

Q ss_pred             eeeeeEEeeCCEEEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE-CCeEEEEECCCCcccccee
Q 006913           38 RLSKPLIGEDGKIYACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSESAT  114 (626)
Q Consensus        38 ~~Sspvid~dG~IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~  114 (626)
                      +.+.... .++.|..|+ ++.+..+|. +++..+.+....  ..+.++....++.+..|+ ++.|...|..++.     .
T Consensus       124 v~~~~~~-~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~--~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~-----~  195 (464)
T 3v7d_B          124 VITCLQF-EDNYVITGADDKMIRVYDSINKKFLLQLSGHD--GGVWALKYAHGGILVSGSTDRTVRVWDIKKGC-----C  195 (464)
T ss_dssp             CEEEEEE-ETTEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECSTTEEEEEETTSCEEEEETTTTE-----E
T ss_pred             cEEEEEE-CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCC--cCEEEEEEcCCCEEEEEeCCCCEEEEECCCCc-----E
Confidence            3343333 455666676 678999997 777766554221  234455555667666666 7889999988763     1


Q ss_pred             EEEecCCCCCCCCCCeeEEEEEE-cC-CeEEEEEcCCeEEEEeCC-CcEEEEECCccc-c--cccc------cccccCCC
Q 006913          115 QVFYGTGSGKGGTGAIAGIAVST-SS-SSVYINVKGRALFAFMTH-GQLLWSAGPVLD-Q--LGYR------QGCTKTDV  182 (626)
Q Consensus       115 ~~~~~~~~~~~~~~~~I~s~~~d-~d-G~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~-~--~~~~------~~~~~~l~  182 (626)
                      ...+.     .....+....... .+ ..|..++.++.+..+|.. +........... .  +...      ....... 
T Consensus       196 ~~~~~-----~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  269 (464)
T 3v7d_B          196 THVFE-----GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH-  269 (464)
T ss_dssp             EEEEC-----CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCC-
T ss_pred             EEEEC-----CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCc-
Confidence            22221     1112222222222 34 446677778888888864 432211100000 0  0000      0000000 


Q ss_pred             CCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCC-eEEEEEcCCCEEEEEECCCCcE
Q 006913          183 DCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNG-YLYVTIPVRALVLALDTSSGNI  261 (626)
Q Consensus       183 ~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG-~LwVGT~~gG~l~alD~~tG~~  261 (626)
                      ...+ .....+  ++.|..|+.++.|..+|..+++....... ....+.++....+| .+..|+ .++.+..+|..+++.
T Consensus       270 ~~~v-~~~~~~--~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~sg~-~dg~i~vwd~~~~~~  344 (464)
T 3v7d_B          270 MASV-RTVSGH--GNIVVSGSYDNTLIVWDVAQMKCLYILSG-HTDRIYSTIYDHERKRCISAS-MDTTIRIWDLENGEL  344 (464)
T ss_dssp             SSCE-EEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEETTTTEEEEEE-TTSCEEEEETTTTEE
T ss_pred             cceE-EEEcCC--CCEEEEEeCCCeEEEEECCCCcEEEEecC-CCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCcE
Confidence            0011 112223  67788898899999999998877654331 12346667777776 455555 457888899989987


Q ss_pred             EEEEecCCCCCceeeEEEeeCCeEEEEEcCCeEEEEcCC-CCEEE
Q 006913          262 LWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPS-GVLNK  305 (626)
Q Consensus       262 ~w~~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~-g~~~~  305 (626)
                      .......  ...+..+..+ +..+..|+.++.|..+|.. +....
T Consensus       345 ~~~~~~h--~~~v~~~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~  386 (464)
T 3v7d_B          345 MYTLQGH--TALVGLLRLS-DKFLVSAAADGSIRGWDANDYSRKF  386 (464)
T ss_dssp             EEEECCC--SSCEEEEEEC-SSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             EEEEeCC--CCcEEEEEEc-CCEEEEEeCCCcEEEEECCCCceee
Confidence            7665332  1234445555 6788889999999999975 44433

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.07  E-value=0.0016  Score=65.72  Aligned_cols=236  Identities=14%  Similarity=0.136  Sum_probs=130.8

Q ss_pred             eEEeeCCEEEEEe--CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCe-EEEEE--CCeEEEEECCCCccccceeE
Q 006913           42 PLIGEDGKIYACS--EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGE-VYIVA--ENRVLKVDLLKIGTSESATQ  115 (626)
Q Consensus        42 pvid~dG~IwIgS--dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~-IwVgT--~ggL~~id~~~~~~~~~~~~  115 (626)
                      +....++.+|+..  ++.|+.+|. +++..+.+..+.. .....+.++.+|+ +|++.  ++.|+.+|..++..     .
T Consensus         5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~-----~   78 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN-----T   78 (349)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC-CSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE-----E
T ss_pred             ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCC-CCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE-----E
Confidence            3444678888864  578999998 7877766654321 0233566677776 77776  57899999887631     2


Q ss_pred             EEecCCCCCCCCCCeeEEEEEEcCC-eEEEEEcC------------CeEEEEeCC-CcEEEEECCcccccccccccccCC
Q 006913          116 VFYGTGSGKGGTGAIAGIAVSTSSS-SVYINVKG------------RALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTD  181 (626)
Q Consensus       116 ~~~~~~~~~~~~~~~I~s~~~d~dG-~LwIgT~~------------gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l  181 (626)
                      ............+..+..+....+| .|+++..+            +.|+.+|.. ++.....    ..+.      .. 
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~----~~~~------~~-  147 (349)
T 1jmx_B           79 FHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV----RTFP------MP-  147 (349)
T ss_dssp             EEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS----EEEE------CC-
T ss_pred             EEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccccee----eecc------CC-
Confidence            1111110000000011223334454 57777643            678888864 3321100    0000      00 


Q ss_pred             CCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCC--CC-------------------------------
Q 006913          182 VDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSS--FD-------------------------------  228 (626)
Q Consensus       182 ~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s--~~-------------------------------  228 (626)
                        .. ...+..++ +|.+|++..  .|+.+|..+++.........  ..                               
T Consensus       148 --~~-~~~~~~s~-dg~l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  221 (349)
T 1jmx_B          148 --RQ-VYLMRAAD-DGSLYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKD  221 (349)
T ss_dssp             --SS-CCCEEECT-TSCEEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC--
T ss_pred             --Cc-ccceeECC-CCcEEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCC
Confidence              01 12344554 667888643  39999998888766543221  00                               


Q ss_pred             ----------------------------------cceeeeeec-CC-eEEEEEcCCCEEEEEECCCCcEEEEEecCCCCC
Q 006913          229 ----------------------------------KAFTLTPGN-NG-YLYVTIPVRALVLALDTSSGNILWHKSVGPLGS  272 (626)
Q Consensus       229 ----------------------------------~v~sI~~D~-dG-~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~  272 (626)
                                                        ....+..+. || .+|++   .+.++.+|..+++.......+.   
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~~~~~~~~~~~~---  295 (349)
T 1jmx_B          222 DKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQRKLIKAANLDH---  295 (349)
T ss_dssp             -----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE---ESEEEEEETTTTEEEEEEECSS---
T ss_pred             CcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE---cCeEEEEECccCeEEEEEcCCC---
Confidence                                              001112224 55 56666   3588889998988776554431   


Q ss_pred             ceeeEEEeeCC-eEEEEEcCCeEEEEcCC-CCEEEE
Q 006913          273 AEYAPVVDSNG-WISVGSLDGLLYSFSPS-GVLNKF  306 (626)
Q Consensus       273 ~~sspvvD~dG-~IWVGT~~gGLy~~d~~-g~~~~~  306 (626)
                      ....+..+++| .||++..++.|..+|.. ++....
T Consensus       296 ~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~  331 (349)
T 1jmx_B          296 TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKN  331 (349)
T ss_dssp             CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEE
T ss_pred             CccceEECCCCCEEEEecCCCeEEEEeccccceeee
Confidence            12346666665 68888777889999975 554443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.06  E-value=0.00053  Score=74.39  Aligned_cols=226  Identities=10%  Similarity=0.067  Sum_probs=130.4

Q ss_pred             CeEEec---CCeEEEEE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcC-----CeEE
Q 006913           82 APVHGG---TGEVYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKG-----RALF  152 (626)
Q Consensus        82 sp~iD~---dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~-----gGL~  152 (626)
                      .+.+|.   +|+||++. .+.|.++++.++..     .....       .......+..+.+|+||++...     .+++
T Consensus       143 gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v-----~~~~~-------~~~~P~giavd~dG~lyVad~~~~~~~~gv~  210 (433)
T 4hw6_A          143 RMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYV-----DIKTT-------NIGQCADVNFTLNGDMVVVDDQSSDTNTGIY  210 (433)
T ss_dssp             EEEECTTTTTCEEEEECBTSCEEEEETTTTEE-----EEECC-------CCSCEEEEEECTTCCEEEEECCSCTTSEEEE
T ss_pred             eEEEccccCCCEEEEEeCCCCEEEEECCCCEE-----EEeec-------CCCCccEEEECCCCCEEEEcCCCCcccceEE
Confidence            456775   49999986 48999999976531     11111       1112344556778889998753     3577


Q ss_pred             EEeCCCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcC-CCeEEEEeCCCCeEEEE-EcCCCCCcc
Q 006913          153 AFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT-QGELYSLSAHSPYFNWI-QDLSSFDKA  230 (626)
Q Consensus       153 a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~-~GgL~~ld~~tg~~~w~-~~~~s~~~v  230 (626)
                      .++..+......  .+..+.             ....+++|+.+|.||++.. ++.|++++++++.+... .........
T Consensus       211 ~~~~~~~~~~~~--~~~~~~-------------~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~  275 (433)
T 4hw6_A          211 LFTRASGFTERL--SLCNAR-------------GAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSN  275 (433)
T ss_dssp             EECGGGTTCCEE--EEEECS-------------SBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSC
T ss_pred             EEECCCCeeccc--cccccC-------------CCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCc
Confidence            776543221100  000000             0123567743789999875 56799999997776222 222221222


Q ss_pred             eeeeeecCCe-EEEEEcCCCEEEEEECC--CCcEE----EEEecCCCC-----------CceeeEEE---------eeCC
Q 006913          231 FTLTPGNNGY-LYVTIPVRALVLALDTS--SGNIL----WHKSVGPLG-----------SAEYAPVV---------DSNG  283 (626)
Q Consensus       231 ~sI~~D~dG~-LwVGT~~gG~l~alD~~--tG~~~----w~~~~~~l~-----------~~~sspvv---------D~dG  283 (626)
                      ..++.+.+|+ |||+......++.++..  ++.+.    ..-..+..+           .....+++         |.+|
T Consensus       276 ~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g  355 (433)
T 4hw6_A          276 FHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEY  355 (433)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCE
T ss_pred             ccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCC
Confidence            3578888886 99998767788886643  44321    111101000           11334667         7889


Q ss_pred             eEEEEEc-CCeEEEEcCCCCEEEEeeccC------CCC-----ccccCceEEEEEEe-cCCcEEEE
Q 006913          284 WISVGSL-DGLLYSFSPSGVLNKFSKSDT------SDS-----VIQSSPYWFHLLGP-SIGLKAIL  336 (626)
Q Consensus       284 ~IWVGT~-~gGLy~~d~~g~~~~~~~~~~------~~~-----~ilssp~V~~Il~D-sdG~IwI~  336 (626)
                      +|||... ++.|.+++++|.+..+.-...      .++     ..+..|  ..|..| .+|+|||.
T Consensus       356 ~lyvaD~~n~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P--~giavd~~~g~lyVa  419 (433)
T 4hw6_A          356 DFYFCDRDSHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHP--TSIAYDMKRKCFYIG  419 (433)
T ss_dssp             EEEEEETTTTEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSE--EEEEEETTTTEEEEE
T ss_pred             cEEEEECCCCEEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCC--cEEEEECCCCEEEEE
Confidence            9999975 468999999886655432110      011     012223  468888 89999964

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.06  E-value=0.0041  Score=62.66  Aligned_cols=222  Identities=12%  Similarity=0.088  Sum_probs=128.3

Q ss_pred             CCEEEEEe--CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCe-EEEEE--CCeEEEEECCCCccccceeEEEecC
Q 006913           47 DGKIYACS--EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGE-VYIVA--ENRVLKVDLLKIGTSESATQVFYGT  120 (626)
Q Consensus        47 dG~IwIgS--dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~-IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~  120 (626)
                      .+.+|+..  ++.+..+|. +++.......+.  ... .+.++.+|+ +|++.  ++.|+.+|..++..    .......
T Consensus         9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~----~~~~~~~   81 (331)
T 3u4y_A            9 SNFGIVVEQHLRRISFFSTDTLEILNQITLGY--DFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP----KVVAIQE   81 (331)
T ss_dssp             CCEEEEEEGGGTEEEEEETTTCCEEEEEECCC--CEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC----EEEEEEE
T ss_pred             CCEEEEEecCCCeEEEEeCcccceeeeEEccC--Ccc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce----eEEeccc
Confidence            56778765  567999998 788765555432  122 566777886 77776  57899999987642    0111111


Q ss_pred             CCCCCCCCCeeEEEEEEcCCe-EEEEEcCC----eEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEc
Q 006913          121 GSGKGGTGAIAGIAVSTSSSS-VYINVKGR----ALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQ  194 (626)
Q Consensus       121 ~~~~~~~~~~I~s~~~d~dG~-LwIgT~~g----GL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~  194 (626)
                      .      ......+....+|+ |+ .....    .|..+|.. ++.+.....     +           .. ...+.+++
T Consensus        82 ~------~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~~~-----~-----------~~-~~~~~~sp  137 (331)
T 3u4y_A           82 G------QSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFISTIPI-----P-----------YD-AVGIAISP  137 (331)
T ss_dssp             C------SSCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEEEEC-----C-----------TT-EEEEEECT
T ss_pred             C------CCCccceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEEEEC-----C-----------CC-ccceEECC
Confidence            1      11122133345555 55 44333    68899975 665443200     0           00 13355665


Q ss_pred             CCC-eEEEEcCC-Ce-EEEEeCCCC-eEEEE--EcCCCCCcceeeeeecCCe-EEEEEcCCCEEEEEECCCCcE---EEE
Q 006913          195 CEG-SIYISNTQ-GE-LYSLSAHSP-YFNWI--QDLSSFDKAFTLTPGNNGY-LYVTIPVRALVLALDTSSGNI---LWH  264 (626)
Q Consensus       195 ~dG-~LwIGT~~-Gg-L~~ld~~tg-~~~w~--~~~~s~~~v~sI~~D~dG~-LwVGT~~gG~l~alD~~tG~~---~w~  264 (626)
                       +| .||++... +. |..++.+.. .+...  ...........+..+.||+ ||++...++.+..+|..+++.   ...
T Consensus       138 -dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~  216 (331)
T 3u4y_A          138 -NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNA  216 (331)
T ss_dssp             -TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEE
T ss_pred             -CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeee
Confidence             55 48877553 55 665554432 22111  1111112345667778885 899886667899999888886   544


Q ss_pred             EecCCCCCceeeEEEeeCCe-EEEEEc-CCeEEEEcCC-CCE
Q 006913          265 KSVGPLGSAEYAPVVDSNGW-ISVGSL-DGLLYSFSPS-GVL  303 (626)
Q Consensus       265 ~~~~~l~~~~sspvvD~dG~-IWVGT~-~gGLy~~d~~-g~~  303 (626)
                      ...+   .....+.++++|. +|++.. ++.|+.+|.. ++.
T Consensus       217 ~~~~---~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~  255 (331)
T 3u4y_A          217 VGTN---NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL  255 (331)
T ss_dssp             EECS---SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred             ccCC---CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence            4433   1234567777887 888764 4578999975 554

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.04  E-value=0.0023  Score=64.74  Aligned_cols=177  Identities=12%  Similarity=0.031  Sum_probs=109.9

Q ss_pred             cCeEEecCCeEEEEE--CC--eEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcC-CeEEEEe
Q 006913           81 TAPVHGGTGEVYIVA--EN--RVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKG-RALFAFM  155 (626)
Q Consensus        81 ~sp~iD~dG~IwVgT--~g--gL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~-gGL~a~d  155 (626)
                      ..+..+ ++.||+++  .+  .|.++|+.+++.     .-.....      ....+.-+...+++||+.++. +-++.+|
T Consensus        46 qGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv-----~~~~~l~------~~~FgeGit~~g~~ly~ltw~~~~v~v~D  113 (262)
T 3nol_A           46 EGFFYR-NGYFYESTGLNGRSSIRKVDIESGKT-----LQQIELG------KRYFGEGISDWKDKIVGLTWKNGLGFVWN  113 (262)
T ss_dssp             EEEEEE-TTEEEEEEEETTEEEEEEECTTTCCE-----EEEEECC------TTCCEEEEEEETTEEEEEESSSSEEEEEE
T ss_pred             ceEEEE-CCEEEEECCCCCCceEEEEECCCCcE-----EEEEecC------CccceeEEEEeCCEEEEEEeeCCEEEEEE
Confidence            445565 68999998  33  799999998752     2111111      112222223357899999875 5678999


Q ss_pred             CC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCC----CCcc
Q 006913          156 TH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSS----FDKA  230 (626)
Q Consensus       156 ~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s----~~~v  230 (626)
                      +. ++.+-.+       .+.   .    ..   ..+..|  ++.||++...+.|+.+|+.+.++.-......    ...+
T Consensus       114 ~~t~~~~~ti-------~~~---~----eG---~glt~d--g~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~l  174 (262)
T 3nol_A          114 IRNLRQVRSF-------NYD---G----EG---WGLTHN--DQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPEL  174 (262)
T ss_dssp             TTTCCEEEEE-------ECS---S----CC---CCEEEC--SSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCE
T ss_pred             CccCcEEEEE-------ECC---C----Cc---eEEecC--CCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcccccc
Confidence            85 7776554       110   0    00   123445  6889999877889999999987765433321    1111


Q ss_pred             eeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCC----------CCceeeEEEeeC-CeEEEEE
Q 006913          231 FTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPL----------GSAEYAPVVDSN-GWISVGS  289 (626)
Q Consensus       231 ~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l----------~~~~sspvvD~d-G~IWVGT  289 (626)
                      ..+.. .+|+||+.......+..+|+.+|++.-......+          ..+...++.|++ +++||..
T Consensus       175 NELe~-~~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          175 NELEW-VDGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             EEEEE-ETTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             ceeEE-ECCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            11222 3899999987778999999999998765544321          123456667643 5666655

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.01  E-value=0.019  Score=58.73  Aligned_cols=269  Identities=9%  Similarity=-0.070  Sum_probs=149.0

Q ss_pred             eeEEeeCCEEEE-Ee-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEE-EE-CCeEEEEECCCCccccceeE
Q 006913           41 KPLIGEDGKIYA-CS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYI-VA-ENRVLKVDLLKIGTSESATQ  115 (626)
Q Consensus        41 spvid~dG~IwI-gS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwV-gT-~ggL~~id~~~~~~~~~~~~  115 (626)
                      ......+|.+.+ |+ ++.+..+|. ++.....+....  ..+.++....+|++.+ +. ++.+..++..+...... ..
T Consensus        60 ~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~-~~  136 (340)
T 1got_B           60 AMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRS--SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVR-VS  136 (340)
T ss_dssp             EEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSS--SCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCE-EE
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCC--ccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcce-eE
Confidence            334445665544 55 667888887 776654444322  2233445566777554 44 67788888765321000 11


Q ss_pred             EEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEc
Q 006913          116 VFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQ  194 (626)
Q Consensus       116 ~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~  194 (626)
                      ..+.     .. ...+.......++.+..++.++.+..+|.. ++....+..            +.   ..+ .++...+
T Consensus       137 ~~~~-----~h-~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~------------h~---~~v-~~~~~~~  194 (340)
T 1got_B          137 RELA-----GH-TGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTG------------HT---GDV-MSLSLAP  194 (340)
T ss_dssp             EEEE-----CC-SSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC------------CS---SCE-EEEEECT
T ss_pred             EEec-----CC-CccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcC------------CC---Cce-EEEEECC
Confidence            1111     11 123444444567788888888889999975 766544310            00   111 3344443


Q ss_pred             CCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCce
Q 006913          195 CEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAE  274 (626)
Q Consensus       195 ~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~  274 (626)
                      .+..+..|+.++.|..+|.+++........ ....+.++....+|.+.+....++.+..+|..++..............+
T Consensus       195 ~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~-h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v  273 (340)
T 1got_B          195 DTRLFVSGACDASAKLWDVREGMCRQTFTG-HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI  273 (340)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCSEEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred             CCCEEEEEeCCCcEEEEECCCCeeEEEEcC-CcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccce
Confidence            133456677788899999988776543321 1234566666667755444335578888898888766554333211124


Q ss_pred             eeEEEeeCCe-EEEEEcCCeEEEEcCC-CCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEEeeecCee
Q 006913          275 YAPVVDSNGW-ISVGSLDGLLYSFSPS-GVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLMVVGQF  344 (626)
Q Consensus       275 sspvvD~dG~-IWVGT~~gGLy~~d~~-g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~t~~Ggl  344 (626)
                      .++...++|. +..|+.++.|..+|.. ++......   .     ....|.++....+|... .+++..|.+
T Consensus       274 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~---~-----h~~~v~~~~~s~dg~~l-~s~s~D~~i  336 (340)
T 1got_B          274 TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA---G-----HDNRVSCLGVTDDGMAV-ATGSWDSFL  336 (340)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---C-----CSSCEEEEEECTTSSCE-EEEETTSCE
T ss_pred             EEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEee---c-----CCCcEEEEEEcCCCCEE-EEEcCCccE
Confidence            5566666664 6667888889999864 54433222   0     12235566666666543 454444433

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.00  E-value=0.0015  Score=67.80  Aligned_cols=241  Identities=10%  Similarity=0.073  Sum_probs=128.1

Q ss_pred             eeeeeEEeeCCEEEEEe----CC--cEEEEcCCCCEEEEEeCC--CCC---CcccCeEEecCCeEEEEE-------CCeE
Q 006913           38 RLSKPLIGEDGKIYACS----EK--TLFAFESNGTIAWSLDLD--FTC---NIGTAPVHGGTGEVYIVA-------ENRV   99 (626)
Q Consensus        38 ~~Sspvid~dG~IwIgS----dg--gL~a~d~~G~~~W~~~~~--~~~---~i~~sp~iD~dG~IwVgT-------~ggL   99 (626)
                      ......++.+|+||++.    ++  .|..++ +|++. .++..  ..+   .....+.+|.+|+||+..       ...|
T Consensus        18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~-~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           18 APGNITLTPDGRLFLSLHQFYQPEMQVAELT-QDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             CEEEEEECTTSCEEEEECGGGCCSCSEEEEE-TTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CcceEEECCCCCEEEEeCCCCCCceEEEEEC-CCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            44566777789999874    22  588887 66543 12110  001   123456788899999986       2689


Q ss_pred             EEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEE-cCCeEEEEEc----CCeEEEEeCC-CcEEEEECC---cccc
Q 006913          100 LKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVST-SSSSVYINVK----GRALFAFMTH-GQLLWSAGP---VLDQ  170 (626)
Q Consensus       100 ~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d-~dG~LwIgT~----~gGL~a~d~~-G~~~w~~~~---~~~~  170 (626)
                      +.+|+.+++.   ...+.+....  .........+..+ .++.+|++..    .++|+.+|.. |+. |....   ....
T Consensus        96 ~~~d~~tg~~---~~~~~~~~~~--~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~-~r~~~~~~~~~~  169 (343)
T 2qe8_A           96 VAWDTLNNQL---SRVIYLPPPI--TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA-ARVLQGYPGIAP  169 (343)
T ss_dssp             EEEETTTTEE---EEEEECCTTT--SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE-EEECTTCTTTSC
T ss_pred             EEEECCCCeE---EEEEECChhh--cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE-EEEecCCCcccc
Confidence            9999987631   0112221111  0111122334455 4689999853    5789999985 654 54310   0000


Q ss_pred             --cccc-cccc---cCCCC-----CccccceEEEcCCCeEEEEcCC-CeEEEEeCCC---Ce---------EEEEEcCCC
Q 006913          171 --LGYR-QGCT---KTDVD-----CYFTSVPVIDQCEGSIYISNTQ-GELYSLSAHS---PY---------FNWIQDLSS  226 (626)
Q Consensus       171 --~~~~-~~~~---~~l~~-----~~i~sspviD~~dG~LwIGT~~-GgL~~ld~~t---g~---------~~w~~~~~s  226 (626)
                        ..+. .+..   ....+     ......+++++.+..||++... ..|++++.+.   +.         +.-.-.   
T Consensus       170 ~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~---  246 (343)
T 2qe8_A          170 EDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSE---  246 (343)
T ss_dssp             CSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEE---
T ss_pred             cccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEeccc---
Confidence              0000 0000   00000     0001224555413358877653 3677776421   00         000000   


Q ss_pred             CCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEEEEEc
Q 006913          227 FDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSL  290 (626)
Q Consensus       227 ~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~  290 (626)
                      ......++.|.+|+||++...++.+.++|+.+|++........ ......+.++.+|++||.+.
T Consensus       247 ~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~-~~~p~~va~~~~g~l~v~~~  309 (343)
T 2qe8_A          247 KPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEK-LSWTDSFNFGSDGYLYFDCN  309 (343)
T ss_dssp             CCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGG-GSCEEEEEECTTSCEEEEEC
T ss_pred             CCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCc-eecCCeeEECCCCcEEEEeC
Confidence            0122357889999999998777899999975786543222111 12345677887899999874

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=97.99  E-value=0.0045  Score=64.08  Aligned_cols=229  Identities=13%  Similarity=0.041  Sum_probs=128.3

Q ss_pred             cCeEEecCCeEEEEE---C-C--eEEEEECCCCccccceeEEEecCCC-CCCCCCCeeEEEEEEcCCeEEEEEc------
Q 006913           81 TAPVHGGTGEVYIVA---E-N--RVLKVDLLKIGTSESATQVFYGTGS-GKGGTGAIAGIAVSTSSSSVYINVK------  147 (626)
Q Consensus        81 ~sp~iD~dG~IwVgT---~-g--gL~~id~~~~~~~~~~~~~~~~~~~-~~~~~~~~I~s~~~d~dG~LwIgT~------  147 (626)
                      ..+.++.+|++|++.   . +  .|..++  ++.      ...+.... .....-..+..+..+.+|+||+...      
T Consensus        20 ~~va~~~~g~~~v~~~~~~~~~~~l~~~~--~g~------~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~   91 (343)
T 2qe8_A           20 GNITLTPDGRLFLSLHQFYQPEMQVAELT--QDG------LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKS   91 (343)
T ss_dssp             EEEEECTTSCEEEEECGGGCCSCSEEEEE--TTE------EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTS
T ss_pred             ceEEECCCCCEEEEeCCCCCCceEEEEEC--CCC------eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCC
Confidence            356677889999885   2 2  588887  331      11221100 0000112344556678899999864      


Q ss_pred             CCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcC----CCeEEEEeCCCCeEEEEE
Q 006913          148 GRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT----QGELYSLSAHSPYFNWIQ  222 (626)
Q Consensus       148 ~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~----~GgL~~ld~~tg~~~w~~  222 (626)
                      ...|+.+|+. |+++-.+.     ++...    .... .....+++|..++.+|++..    .++|+.+|.++++..-..
T Consensus        92 ~~~i~~~d~~tg~~~~~~~-----~~~~~----~~~~-~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~  161 (343)
T 2qe8_A           92 VPKLVAWDTLNNQLSRVIY-----LPPPI----TLSN-SFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVL  161 (343)
T ss_dssp             CCEEEEEETTTTEEEEEEE-----CCTTT----SCTT-CCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEEC
T ss_pred             CCeEEEEECCCCeEEEEEE-----CChhh----cccc-cccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEe
Confidence            3689999975 77544331     11000    0000 11134677742679999864    578999999887653222


Q ss_pred             cC-CC--------------C-------------CcceeeeeecCC-eEEEEEcCCCEEEEEECC---CCcE---------
Q 006913          223 DL-SS--------------F-------------DKAFTLTPGNNG-YLYVTIPVRALVLALDTS---SGNI---------  261 (626)
Q Consensus       223 ~~-~s--------------~-------------~~v~sI~~D~dG-~LwVGT~~gG~l~alD~~---tG~~---------  261 (626)
                      .. ..              .             ..+..++.+.|| .||++...+..++.++..   .+..         
T Consensus       162 ~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  241 (343)
T 2qe8_A          162 QGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKI  241 (343)
T ss_dssp             TTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTC
T ss_pred             cCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcce
Confidence            11 00              0             012346666677 588877655677777631   1110         


Q ss_pred             EEEEecCCCCCceeeEEEeeCCeEEEEEc-CCeEEEEcC-CCCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEEe
Q 006913          262 LWHKSVGPLGSAEYAPVVDSNGWISVGSL-DGLLYSFSP-SGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCL  338 (626)
Q Consensus       262 ~w~~~~~~l~~~~sspvvD~dG~IWVGT~-~gGLy~~d~-~g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~  338 (626)
                      .-.-..+    ....+++|++|+||++.. ++.|.++++ +|+.......    .   .......+..+.+|.+|+.+.
T Consensus       242 ~~~g~~g----~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~----~---~~~~p~~va~~~~g~l~v~~~  309 (343)
T 2qe8_A          242 ERYSEKP----ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD----E---KLSWTDSFNFGSDGYLYFDCN  309 (343)
T ss_dssp             EEEEECC----SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC----G---GGSCEEEEEECTTSCEEEEEC
T ss_pred             EecccCC----CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC----C---ceecCCeeEECCCCcEEEEeC
Confidence            0000011    123478898999999985 468999999 7865433321    0   012234677788899997654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.98  E-value=0.0032  Score=66.29  Aligned_cols=228  Identities=15%  Similarity=0.094  Sum_probs=123.3

Q ss_pred             eeeeeEEeeCCEEEEEe-CCcEEEEcCCCCEEEEEeCC--C-CCCcccCeEEecC----CeEEEEE-C--------CeEE
Q 006913           38 RLSKPLIGEDGKIYACS-EKTLFAFESNGTIAWSLDLD--F-TCNIGTAPVHGGT----GEVYIVA-E--------NRVL  100 (626)
Q Consensus        38 ~~Sspvid~dG~IwIgS-dggL~a~d~~G~~~W~~~~~--~-~~~i~~sp~iD~d----G~IwVgT-~--------ggL~  100 (626)
                      .-..++++.+|+||++. .+.|++++.+|. .-.....  . ...-...+.++.+    |.||+.. .        +.|.
T Consensus        30 ~P~~ia~~pdG~l~V~e~~g~I~~~d~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~  108 (354)
T 3a9g_A           30 VPWSIAPLGGGRYLVTERPGRLVLISPSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVI  108 (354)
T ss_dssp             CEEEEEEEETTEEEEEETTTEEEEECSSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEE
T ss_pred             CCeEEEEcCCCeEEEEeCCCEEEEEeCCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEE
Confidence            34566777899999997 678999987775 2111111  0 0011234566654    8999975 3        6799


Q ss_pred             EEECCCC--ccccceeEEE-ecCCCCCCCCCCeeEEEEEEcCCeEEEEEc--------------CCeEEEEeCCCc----
Q 006913          101 KVDLLKI--GTSESATQVF-YGTGSGKGGTGAIAGIAVSTSSSSVYINVK--------------GRALFAFMTHGQ----  159 (626)
Q Consensus       101 ~id~~~~--~~~~~~~~~~-~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~--------------~gGL~a~d~~G~----  159 (626)
                      +++..+.  ........+. +...  ..+.   .+.+..+.+|.||+++.              .+.|++++++|+    
T Consensus       109 r~~~~~~~~~~~~~~~l~~~~~~~--~~h~---~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~  183 (354)
T 3a9g_A          109 RGRLDGSTFKLKEVKTLIDGIPGA--YIHN---GGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPAD  183 (354)
T ss_dssp             EEEECSSSCCEEEEEEEEEEEECC--SSCC---CCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTT
T ss_pred             EEEECCCCcCcCccEEEEEcCCCC--CCcC---CceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCC
Confidence            9987653  1110111111 1111  1111   12345578999999853              246888988775    


Q ss_pred             ------EEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCC----eEEEEeCCCCeEEEEE-------
Q 006913          160 ------LLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQG----ELYSLSAHSPYFNWIQ-------  222 (626)
Q Consensus       160 ------~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~G----gL~~ld~~tg~~~w~~-------  222 (626)
                            .+|..       +.+.           ..-+.+|+.+|.||++....    .|..+.+ ++.+-|-.       
T Consensus       184 npf~~~~i~a~-------G~rn-----------p~Gla~d~~~g~l~v~d~g~~~~dei~~i~~-G~nyGwp~~~g~~~~  244 (354)
T 3a9g_A          184 NPFPNSPIWSY-------GHRN-----------PQGIDWHRASGVMVATEHGPVGHDEVNIILK-GGNYGWPLATGKAGR  244 (354)
T ss_dssp             SSSTTCCEEEE-------CCSC-----------CCEEEECTTTCCEEEEECCSSSCCEEEEECT-TCBCCTTTCCSCCCC
T ss_pred             CCCCCCcEEEE-------ccCC-----------cceEEEeCCCCCEEEEecCCCCCcEEEEecC-CCcCCCCcccCCCCC
Confidence                  23432       1110           12256664368899987532    3666643 22222210       


Q ss_pred             --------cC-CCCCcceeeee-------ecCCeEEEEEcCCCEEEEEECCC-CcEEE-EEecCCCCCceeeEEEeeCCe
Q 006913          223 --------DL-SSFDKAFTLTP-------GNNGYLYVTIPVRALVLALDTSS-GNILW-HKSVGPLGSAEYAPVVDSNGW  284 (626)
Q Consensus       223 --------~~-~s~~~v~sI~~-------D~dG~LwVGT~~gG~l~alD~~t-G~~~w-~~~~~~l~~~~sspvvD~dG~  284 (626)
                              .. ........++.       +.+|.+|++...++.+..++... |...- ..-..........+.++++|.
T Consensus       245 ~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~  324 (354)
T 3a9g_A          245 GEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGG  324 (354)
T ss_dssp             TTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSC
T ss_pred             CCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCc
Confidence                    00 00001122232       46899999998778888888654 33321 111111112245678888999


Q ss_pred             EEEEEc
Q 006913          285 ISVGSL  290 (626)
Q Consensus       285 IWVGT~  290 (626)
                      |||.+.
T Consensus       325 lyv~~~  330 (354)
T 3a9g_A          325 ILISTS  330 (354)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            999986

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.98  E-value=0.0083  Score=61.69  Aligned_cols=197  Identities=10%  Similarity=0.083  Sum_probs=117.1

Q ss_pred             ceeeeeEEee-CCEEEEEe--CCcEEEEcCCC----CE-EEEEeCCCCCCcccCeEEec-CCeEEEEE--CCeEEEEECC
Q 006913           37 FRLSKPLIGE-DGKIYACS--EKTLFAFESNG----TI-AWSLDLDFTCNIGTAPVHGG-TGEVYIVA--ENRVLKVDLL  105 (626)
Q Consensus        37 ~~~Sspvid~-dG~IwIgS--dggL~a~d~~G----~~-~W~~~~~~~~~i~~sp~iD~-dG~IwVgT--~ggL~~id~~  105 (626)
                      .....+..|. ++.||+..  .+.|++++.+|    .. ........  .....+.+|. .++||+..  .+.|.+++++
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~--~~p~glavd~~~~~ly~~d~~~~~I~~~~~~  107 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI--QAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  107 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC--SCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCC--CCcCEEEEeecCCeEEEEECCCCEEEEEeCC
Confidence            3345667764 67898876  46799998854    22 11121111  1234567774 78899985  5789999987


Q ss_pred             CCccccceeEEEecCCCCCCCCCCeeEEEEEE-cCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccccccccccCCC
Q 006913          106 KIGTSESATQVFYGTGSGKGGTGAIAGIAVST-SSSSVYINVKG--RALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDV  182 (626)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d-~dG~LwIgT~~--gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~  182 (626)
                      +..     ........     .... ..+..+ .+|.||+...+  +.|+.++++|...-....            ..+ 
T Consensus       108 g~~-----~~~~~~~~-----~~~P-~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~------------~~~-  163 (316)
T 1ijq_A          108 GVK-----RKTLFREN-----GSKP-RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT------------ENI-  163 (316)
T ss_dssp             SSS-----EEEEEECT-----TCCE-EEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC------------SSC-
T ss_pred             CCc-----eEEEEECC-----CCCc-ceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEE------------CCC-
Confidence            642     12221110     0112 334456 58899998754  579999988765332200            000 


Q ss_pred             CCccccceEEEcCCCeEEEEcC-CCeEEEEeCCCCeEEEEEcC-CCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCc
Q 006913          183 DCYFTSVPVIDQCEGSIYISNT-QGELYSLSAHSPYFNWIQDL-SSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGN  260 (626)
Q Consensus       183 ~~~i~sspviD~~dG~LwIGT~-~GgL~~ld~~tg~~~w~~~~-~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~  260 (626)
                        .....+++|..++.||++.. .+.|.++|.++......... ........++++ +++||+....++.+..+++.+|+
T Consensus       164 --~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~  240 (316)
T 1ijq_A          164 --QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS  240 (316)
T ss_dssp             --SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred             --CCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCc
Confidence              01234677743789998865 56899999987544333222 122344567776 58999988777899999977776


Q ss_pred             EE
Q 006913          261 IL  262 (626)
Q Consensus       261 ~~  262 (626)
                      ..
T Consensus       241 ~~  242 (316)
T 1ijq_A          241 DV  242 (316)
T ss_dssp             CC
T ss_pred             ce
Confidence            43

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.94  E-value=0.0076  Score=60.32  Aligned_cols=178  Identities=14%  Similarity=0.068  Sum_probs=110.1

Q ss_pred             ccCeEEecCCeEEEEE-C---CeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcC-CeEEEE
Q 006913           80 GTAPVHGGTGEVYIVA-E---NRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKG-RALFAF  154 (626)
Q Consensus        80 ~~sp~iD~dG~IwVgT-~---ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~-gGL~a~  154 (626)
                      ...+..+. +.||+++ .   ..|.++|+.+++.     .-.....      ....+.-+...+++||+.+.. +-++.+
T Consensus        23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv-----~~~~~l~------~~~fgeGi~~~~~~ly~ltw~~~~v~v~   90 (243)
T 3mbr_X           23 TEGLFYLR-GHLYESTGETGRSSVRKVDLETGRI-----LQRAEVP------PPYFGAGIVAWRDRLIQLTWRNHEGFVY   90 (243)
T ss_dssp             EEEEEEET-TEEEEEECCTTSCEEEEEETTTCCE-----EEEEECC------TTCCEEEEEEETTEEEEEESSSSEEEEE
T ss_pred             cccEEEEC-CEEEEECCCCCCceEEEEECCCCCE-----EEEEeCC------CCcceeEEEEeCCEEEEEEeeCCEEEEE
Confidence            33455554 8999998 2   3799999998752     1111111      112222223347899999865 557889


Q ss_pred             eCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCC----CCc
Q 006913          155 MTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSS----FDK  229 (626)
Q Consensus       155 d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s----~~~  229 (626)
                      |++ .+.+-.+       ++.    .   ..   ..+..|  ++.||++...+.|+.+|+++.++.-......    ...
T Consensus        91 D~~tl~~~~ti-------~~~----~---~G---wglt~d--g~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~  151 (243)
T 3mbr_X           91 DLATLTPRARF-------RYP----G---EG---WALTSD--DSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDN  151 (243)
T ss_dssp             ETTTTEEEEEE-------ECS----S---CC---CEEEEC--SSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCC
T ss_pred             ECCcCcEEEEE-------eCC----C---Cc---eEEeeC--CCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccc
Confidence            975 7766544       110    0   00   123344  7889999988899999999987765433221    111


Q ss_pred             ceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCC-----------CCCceeeEEEeeC-CeEEEEE
Q 006913          230 AFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGP-----------LGSAEYAPVVDSN-GWISVGS  289 (626)
Q Consensus       230 v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~-----------l~~~~sspvvD~d-G~IWVGT  289 (626)
                      +..+ +-.+|+||+.......+..+|+.+|++.-.....+           ...+...++.|++ +++||..
T Consensus       152 lNeL-e~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          152 LNEL-EWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             EEEE-EEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             ceee-EEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            2122 22489999998766799999999999876554331           1124566777753 5677755

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.92  E-value=0.007  Score=61.40  Aligned_cols=188  Identities=13%  Similarity=0.028  Sum_probs=116.9

Q ss_pred             cCeEEecCCeEEEEE----CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcC-CeEEEEe
Q 006913           81 TAPVHGGTGEVYIVA----ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKG-RALFAFM  155 (626)
Q Consensus        81 ~sp~iD~dG~IwVgT----~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~-gGL~a~d  155 (626)
                      ..+.++.+|.||+++    ++.|..+|+.+++.     .-......     . .....+...++.||+.++. +.++.+|
T Consensus        24 ~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v-----~~~i~l~~-----~-~fgeGi~~~g~~lyv~t~~~~~v~viD   92 (266)
T 2iwa_A           24 QGLVYAENDTLFESTGLYGRSSVRQVALQTGKV-----ENIHKMDD-----S-YFGEGLTLLNEKLYQVVWLKNIGFIYD   92 (266)
T ss_dssp             EEEEECSTTEEEEEECSTTTCEEEEEETTTCCE-----EEEEECCT-----T-CCEEEEEEETTEEEEEETTCSEEEEEE
T ss_pred             ccEEEeCCCeEEEECCCCCCCEEEEEECCCCCE-----EEEEecCC-----C-cceEEEEEeCCEEEEEEecCCEEEEEE
Confidence            356667779999997    26899999998752     21211110     1 1111122236799999875 5678999


Q ss_pred             CC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCC----CCcc
Q 006913          156 TH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSS----FDKA  230 (626)
Q Consensus       156 ~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s----~~~v  230 (626)
                      +. ++.+-.+..     +      ..  ..   ..+..|  ++.+|++...+.|+.+|+++.++.-....+.    ....
T Consensus        93 ~~t~~v~~~i~~-----g------~~--~g---~glt~D--g~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~  154 (266)
T 2iwa_A           93 RRTLSNIKNFTH-----Q------MK--DG---WGLATD--GKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRL  154 (266)
T ss_dssp             TTTTEEEEEEEC-----C------SS--SC---CEEEEC--SSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred             CCCCcEEEEEEC-----C------CC--Ce---EEEEEC--CCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccc
Confidence            75 776655410     0      00  00   113334  6889999888899999999987765544321    1112


Q ss_pred             eeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCC-----------CCCceeeEEEeeC-CeEEEEEc-CCeEEEE
Q 006913          231 FTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGP-----------LGSAEYAPVVDSN-GWISVGSL-DGLLYSF  297 (626)
Q Consensus       231 ~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~-----------l~~~~sspvvD~d-G~IWVGT~-~gGLy~~  297 (626)
                      ..+... +|.||+.....+.+..+|+.+|++.-....+.           .......++.+++ +++||+.. .+.|+.+
T Consensus       155 nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i  233 (266)
T 2iwa_A          155 NELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEI  233 (266)
T ss_dssp             EEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred             eeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEE
Confidence            233333 78999998766799999999999875554321           0123456777765 47888773 4567766


Q ss_pred             c
Q 006913          298 S  298 (626)
Q Consensus       298 d  298 (626)
                      +
T Consensus       234 ~  234 (266)
T 2iwa_A          234 K  234 (266)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.91  E-value=0.036  Score=58.59  Aligned_cols=255  Identities=11%  Similarity=-0.039  Sum_probs=150.4

Q ss_pred             CCEEEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE-CCeEEEEECCCCccccceeEEEecCCCC
Q 006913           47 DGKIYACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSG  123 (626)
Q Consensus        47 dG~IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~  123 (626)
                      ++.++.|+ ++.+..+|. +++....+....  ..+.++..+ .+.+..++ ++.|..+|..++..     ...+..   
T Consensus       169 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~-~~~l~s~s~dg~i~~wd~~~~~~-----~~~~~~---  237 (445)
T 2ovr_B          169 DNIIISGSTDRTLKVWNAETGECIHTLYGHT--STVRCMHLH-EKRVVSGSRDATLRVWDIETGQC-----LHVLMG---  237 (445)
T ss_dssp             TTEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEEE-TTEEEEEETTSEEEEEESSSCCE-----EEEEEC---
T ss_pred             CCEEEEEeCCCeEEEEECCcCcEEEEECCCC--CcEEEEEec-CCEEEEEeCCCEEEEEECCCCcE-----EEEEcC---
Confidence            45666666 667888887 676655443221  223344443 34566666 78899999877531     222211   


Q ss_pred             CCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEE
Q 006913          124 KGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYIS  202 (626)
Q Consensus       124 ~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIG  202 (626)
                        . ...+..+.. .+..+..++.++.|..+|.. ++.+.....            +   ...+ .++..+  +..|+.|
T Consensus       238 --~-~~~v~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------------~---~~~v-~~~~~~--~~~l~~~  295 (445)
T 2ovr_B          238 --H-VAAVRCVQY-DGRRVVSGAYDFMVKVWDPETETCLHTLQG------------H---TNRV-YSLQFD--GIHVVSG  295 (445)
T ss_dssp             --C-SSCEEEEEE-CSSCEEEEETTSCEEEEEGGGTEEEEEECC------------C---SSCE-EEEEEC--SSEEEEE
T ss_pred             --C-cccEEEEEE-CCCEEEEEcCCCEEEEEECCCCcEeEEecC------------C---CCce-EEEEEC--CCEEEEE
Confidence              1 122333332 55668888888889999975 766655411            0   0111 233444  6788899


Q ss_pred             cCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCC-CCCceeeEEEee
Q 006913          203 NTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGP-LGSAEYAPVVDS  281 (626)
Q Consensus       203 T~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~-l~~~~sspvvD~  281 (626)
                      +.++.|..+|.++++........ ...+.++..+ ++.+.+|+. ++.+..+|..+++......... ....+.++..+ 
T Consensus       296 ~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~-~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-  371 (445)
T 2ovr_B          296 SLDTSIRVWDVETGNCIHTLTGH-QSLTSGMELK-DNILVSGNA-DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN-  371 (445)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCC-CSCEEEEEEE-TTEEEEEET-TSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC-
T ss_pred             eCCCeEEEEECCCCCEEEEEcCC-cccEEEEEEe-CCEEEEEeC-CCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC-
Confidence            88999999999998876654321 1234445444 456777764 5788889988998876654321 11234445555 


Q ss_pred             CCeEEEEEcCCeEEEEcCC-CCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEEeeecC
Q 006913          282 NGWISVGSLDGLLYSFSPS-GVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLMVVG  342 (626)
Q Consensus       282 dG~IWVGT~~gGLy~~d~~-g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~t~~G  342 (626)
                      ...|..|+.++.|..+|.. ++...........   .....|.++....+|.+. .+++..|
T Consensus       372 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l-a~~~~dg  429 (445)
T 2ovr_B          372 KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESG---GSGGVVWRIRASNTKLVC-AVGSRNG  429 (445)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEEEEEEECTTG---GGTCEEEEEEECSSEEEE-EEECSSS
T ss_pred             CCEEEEEeCCCeEEEEECCCCceeeeeeccccC---CCCceEEEEEecCCEEEE-EEcccCC
Confidence            5788889999999999964 6655433211111   233456667666666653 5544433

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=97.90  E-value=0.025  Score=56.29  Aligned_cols=233  Identities=12%  Similarity=0.028  Sum_probs=130.2

Q ss_pred             cccCeEEecCCeEEEEE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCC-eEEEEEcCCeEEEEeC
Q 006913           79 IGTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSS-SVYINVKGRALFAFMT  156 (626)
Q Consensus        79 i~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG-~LwIgT~~gGL~a~d~  156 (626)
                      .+.++....++++.+.. ++.|..++..++...........      ......+..+....++ .|..++.++.|..+|.
T Consensus        53 ~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~  126 (337)
T 1gxr_A           53 VVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDC------LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL  126 (337)
T ss_dssp             CCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEEC------SCTTSBEEEEEECTTSSEEEEEESSSEEEEEEC
T ss_pred             ceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccc------cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEEC
Confidence            34456666777766554 78888888876421111011110      0112234444444454 5777777788889997


Q ss_pred             C-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeee
Q 006913          157 H-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTP  235 (626)
Q Consensus       157 ~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~  235 (626)
                      . ++.....     .+.  .   +   ... ...+...+.+..|+.++.++.|..+|.++++....... ....+.++..
T Consensus       127 ~~~~~~~~~-----~~~--~---~---~~~-i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-~~~~i~~~~~  191 (337)
T 1gxr_A          127 AAPTPRIKA-----ELT--S---S---APA-CYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG-HTDGASCIDI  191 (337)
T ss_dssp             CCC--EEEE-----EEE--C---S---SSC-EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEE
T ss_pred             CCCCcceee-----ecc--c---C---CCc-eEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeec-ccCceEEEEE
Confidence            5 5421111     000  0   0   011 12334443245678888889999999998876554332 1234556666


Q ss_pred             ecCC-eEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCC-eEEEEEcCCeEEEEcCC-CCEEEEeeccCC
Q 006913          236 GNNG-YLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNG-WISVGSLDGLLYSFSPS-GVLNKFSKSDTS  312 (626)
Q Consensus       236 D~dG-~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG-~IWVGT~~gGLy~~d~~-g~~~~~~~~~~~  312 (626)
                      ..+| .|++++ ..+.+..+|..+++........   ..+..+...++| .+.+|+.++.|+.++.. ++......    
T Consensus       192 ~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~----  263 (337)
T 1gxr_A          192 SNDGTKLWTGG-LDNTVRSWDLREGRQLQQHDFT---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL----  263 (337)
T ss_dssp             CTTSSEEEEEE-TTSEEEEEETTTTEEEEEEECS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECC----
T ss_pred             CCCCCEEEEEe-cCCcEEEEECCCCceEeeecCC---CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcC----
Confidence            6666 555555 4678999999888877665443   124456665555 57778888999999975 44332211    


Q ss_pred             CCccccCceEEEEEEecCCcEEEEEeeecCeeEE
Q 006913          313 DSVIQSSPYWFHLLGPSIGLKAILCLMVVGQFSS  346 (626)
Q Consensus       313 ~~~ilssp~V~~Il~DsdG~IwI~T~t~~Ggl~~  346 (626)
                           ....|..+....+|.+. .++...|.+..
T Consensus       264 -----~~~~v~~~~~~~~~~~l-~~~~~dg~i~~  291 (337)
T 1gxr_A          264 -----HESCVLSLKFAYCGKWF-VSTGKDNLLNA  291 (337)
T ss_dssp             -----CSSCEEEEEECTTSSEE-EEEETTSEEEE
T ss_pred             -----CccceeEEEECCCCCEE-EEecCCCcEEE
Confidence                 11234555556666654 44444454443

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=97.89  E-value=0.0077  Score=61.38  Aligned_cols=248  Identities=13%  Similarity=0.110  Sum_probs=125.4

Q ss_pred             eeeeEEeeCCEEEEEeC----CcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCe-EEEEE--CCeEEEEECCC-Ccc
Q 006913           39 LSKPLIGEDGKIYACSE----KTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGE-VYIVA--ENRVLKVDLLK-IGT  109 (626)
Q Consensus        39 ~Sspvid~dG~IwIgSd----ggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~-IwVgT--~ggL~~id~~~-~~~  109 (626)
                      ...+.++.+|+||+++.    +.++.++. +|.................+.++.+|+ ||++.  ++.+..++... +..
T Consensus        42 p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~  121 (347)
T 3hfq_A           42 PTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGAL  121 (347)
T ss_dssp             CCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCE
T ss_pred             cceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCe
Confidence            34456667888888763    47888887 555321111000011233566778887 77766  46677777642 211


Q ss_pred             ccceeEEEecC-CCCC--CCCCCeeEEEEEEcCCeEEEEEcC-CeEEEEeC--CCcEEEEECCcccccccccccccCCCC
Q 006913          110 SESATQVFYGT-GSGK--GGTGAIAGIAVSTSSSSVYINVKG-RALFAFMT--HGQLLWSAGPVLDQLGYRQGCTKTDVD  183 (626)
Q Consensus       110 ~~~~~~~~~~~-~~~~--~~~~~~I~s~~~d~dG~LwIgT~~-gGL~a~d~--~G~~~w~~~~~~~~~~~~~~~~~~l~~  183 (626)
                         ........ ....  ......+..+....+|++|+.... +.+..++.  +|++....     .+....       +
T Consensus       122 ---~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~-----~~~~~~-------g  186 (347)
T 3hfq_A          122 ---TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQS-----VLTMEA-------G  186 (347)
T ss_dssp             ---EEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEE-----EEECCT-------T
T ss_pred             ---eecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEee-----eEEcCC-------C
Confidence               00111111 0000  001123444556778888887654 45777775  35543221     000000       0


Q ss_pred             CccccceEEEcCCCe-EEEEcC-CCeEEEEeCC--CCeEEEEEcC---CC----CCcceeeeeecCCe-EEEEEcCCCEE
Q 006913          184 CYFTSVPVIDQCEGS-IYISNT-QGELYSLSAH--SPYFNWIQDL---SS----FDKAFTLTPGNNGY-LYVTIPVRALV  251 (626)
Q Consensus       184 ~~i~sspviD~~dG~-LwIGT~-~GgL~~ld~~--tg~~~w~~~~---~s----~~~v~sI~~D~dG~-LwVGT~~gG~l  251 (626)
                      .. ...+.+++ +|+ ||+... ++.+..++.+  ++++......   ..    ...+..++.+.||+ ||++....+.+
T Consensus       187 ~~-p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v  264 (347)
T 3hfq_A          187 FG-PRHLVFSP-DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTL  264 (347)
T ss_dssp             CC-EEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEE
T ss_pred             CC-CceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEE
Confidence            00 12245665 665 888643 5555555544  5665432221   11    12345577788885 88876555667


Q ss_pred             EEEECC-CCcEEE--EEecCCCCCceeeEEEeeCCe-EEEEEcC-CeEEEE--cCC-CCEEE
Q 006913          252 LALDTS-SGNILW--HKSVGPLGSAEYAPVVDSNGW-ISVGSLD-GLLYSF--SPS-GVLNK  305 (626)
Q Consensus       252 ~alD~~-tG~~~w--~~~~~~l~~~~sspvvD~dG~-IWVGT~~-gGLy~~--d~~-g~~~~  305 (626)
                      ..++.. +|....  .....  +.....+.++++|. ||++..+ +.+..|  |+. |+...
T Consensus       265 ~v~~~~~~g~~~~~~~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~  324 (347)
T 3hfq_A          265 AVFAVTADGHLTLIQQISTE--GDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL  324 (347)
T ss_dssp             EEEEECGGGCEEEEEEEECS--SSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             EEEEECCCCcEEEeEEEecC--CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence            667653 343332  22221  12234567777875 8888765 555555  654 65543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.86  E-value=0.014  Score=61.02  Aligned_cols=227  Identities=14%  Similarity=0.043  Sum_probs=132.3

Q ss_pred             eeCCEEEEEeCCcEEEEcCCCCEEEEEeCCCCCCcccCeEEe-cCCeEEEEE--CCeEEEEECCCCccccceeEEEecCC
Q 006913           45 GEDGKIYACSEKTLFAFESNGTIAWSLDLDFTCNIGTAPVHG-GTGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTG  121 (626)
Q Consensus        45 d~dG~IwIgSdggL~a~d~~G~~~W~~~~~~~~~i~~sp~iD-~dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~  121 (626)
                      +.++.|+++....|..++.+|... ....... .....+..| .++.||+..  .+.|+++++++...     .......
T Consensus        42 ~~~~~ll~~~~~~I~~i~~~g~~~-~~~~~~~-~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-----~~~~~~~  114 (349)
T 3v64_C           42 GPEPVLLFANRIDIRQVLPHRSEY-TLLLNNL-ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-----EEVVSTG  114 (349)
T ss_dssp             SSCCEEEEECBSCEEEECTTSCCE-EEEECSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----EEEECSS
T ss_pred             ccCceeEeecccceEEEeCCCCee-EEeecCC-CceEEEEEeccccEEEEEeccCCceEEEecCCCCc-----eEEEeCC
Confidence            346677777777799999865422 1111111 122345566 578899886  67899999887531     1111110


Q ss_pred             CCCCCCCCeeEEEEEE-cCCeEEEEEcC-CeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeE
Q 006913          122 SGKGGTGAIAGIAVST-SSSSVYINVKG-RALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSI  199 (626)
Q Consensus       122 ~~~~~~~~~I~s~~~d-~dG~LwIgT~~-gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~L  199 (626)
                           .....+ +..+ .+++||+.... +.|..++.+|...-...        .    ..+   .....+++|+.++.|
T Consensus       115 -----~~~p~g-lavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~--------~----~~l---~~P~~iavdp~~g~l  173 (349)
T 3v64_C          115 -----LESPGG-LAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL--------W----QSL---EKPRAIALHPMEGTI  173 (349)
T ss_dssp             -----CSCCCE-EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE--------C----TTC---SCEEEEEEETTTTEE
T ss_pred             -----CCCccE-EEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEE--------e----CCC---CCcceEEEecCcCeE
Confidence                 011223 3345 58899988653 67888998765322210        0    000   012346788547889


Q ss_pred             EEEcCC--CeEEEEeCCCCeEEEEEcCCCCCcceeeeee-cCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceee
Q 006913          200 YISNTQ--GELYSLSAHSPYFNWIQDLSSFDKAFTLTPG-NNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYA  276 (626)
Q Consensus       200 wIGT~~--GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D-~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~ss  276 (626)
                      |+....  +.|++++.++........ ........++.| .+++||++....+.+..+|............+ + .....
T Consensus       174 y~td~~~~~~I~r~~~dG~~~~~~~~-~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~-~-~~P~g  250 (349)
T 3v64_C          174 YWTDWGNTPRIEASSMDGSGRRIIAD-THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG-L-PHPFA  250 (349)
T ss_dssp             EEEECSSSCEEEEEETTSCSCEESCC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-C-SSEEE
T ss_pred             EEeccCCCCEEEEEeCCCCCcEEEEE-CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC-C-CCceE
Confidence            988763  679999988754332211 122334568888 57899999877778999986433222212111 1 12344


Q ss_pred             EEEeeCCeEEEEEc-CCeEEEEcC-CCCE
Q 006913          277 PVVDSNGWISVGSL-DGLLYSFSP-SGVL  303 (626)
Q Consensus       277 pvvD~dG~IWVGT~-~gGLy~~d~-~g~~  303 (626)
                      +.++ ++.||+... ++.|.++++ +|+.
T Consensus       251 iav~-~~~ly~td~~~~~V~~~~~~~G~~  278 (349)
T 3v64_C          251 ITVF-EDSLYWTDWHTKSINSANKFTGKN  278 (349)
T ss_dssp             EEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred             EEEE-CCEEEEecCCCCeEEEEEccCCCc
Confidence            6665 788888875 467889984 5653

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.85  E-value=0.0051  Score=66.57  Aligned_cols=229  Identities=10%  Similarity=0.031  Sum_probs=131.3

Q ss_pred             eeeEEee---CCEEEEEeC-CcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEEC------CeEEEEECCCCc
Q 006913           40 SKPLIGE---DGKIYACSE-KTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVAE------NRVLKVDLLKIG  108 (626)
Q Consensus        40 Sspvid~---dG~IwIgSd-ggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT~------ggL~~id~~~~~  108 (626)
                      ..+++|.   +|.||++.. +.|++++. +|.+.. .....  .....+.+|.+|+||++..      .+++.+++....
T Consensus       142 ~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~-~~~~~--~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~  218 (433)
T 4hw6_A          142 WRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI-KTTNI--GQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF  218 (433)
T ss_dssp             CEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE-ECCCC--SCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred             ceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE-eecCC--CCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence            3557775   499999874 78999998 666542 21111  2234677889999999862      257777654331


Q ss_pred             cccceeEEEecCCCCCCCCCCeeEEEEEEc-CCeEEEEEcC-CeEEEEeCC-CcEEEEECCcccccccccccccCCCCCc
Q 006913          109 TSESATQVFYGTGSGKGGTGAIAGIAVSTS-SSSVYINVKG-RALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCY  185 (626)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~-dG~LwIgT~~-gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~  185 (626)
                      . ..   ......      ... ..+..+. +|+||++... +.|++++++ |.......        ..+. .     .
T Consensus       219 ~-~~---~~~~~~------~~P-~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~--------~~~~-~-----~  273 (433)
T 4hw6_A          219 T-ER---LSLCNA------RGA-KTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEV--------MMDT-K-----G  273 (433)
T ss_dssp             C-CE---EEEEEC------SSB-CCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEE--------ECSC-C-----S
T ss_pred             e-cc---cccccc------CCC-CEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEe--------ccCC-C-----C
Confidence            0 00   000000      001 1133455 8999998754 569999986 76633220        0000 0     0


Q ss_pred             cccceEEEcCCCe-EEEEcC-CCeEEEEeCC--CCeE----EEEEcCC--C----------CCcceeeee---------e
Q 006913          186 FTSVPVIDQCEGS-IYISNT-QGELYSLSAH--SPYF----NWIQDLS--S----------FDKAFTLTP---------G  236 (626)
Q Consensus       186 i~sspviD~~dG~-LwIGT~-~GgL~~ld~~--tg~~----~w~~~~~--s----------~~~v~sI~~---------D  236 (626)
                      ....+++++ +|+ ||+... ++.|++++.+  ++.+    .+.-..+  +          +.....++.         |
T Consensus       274 ~~~~ia~dp-dG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd  352 (433)
T 4hw6_A          274 SNFHIVWHP-TGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEE  352 (433)
T ss_dssp             SCEEEEECT-TSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSS
T ss_pred             CcccEEEeC-CCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccC
Confidence            112367776 555 999875 5678887755  3332    1111111  0          122345777         8


Q ss_pred             cCCeEEEEEcCCCEEEEEECCCCcEEEEEecCC----------CC-----CceeeEEEe-eCCeEEEEEc-CCeEEEEc
Q 006913          237 NNGYLYVTIPVRALVLALDTSSGNILWHKSVGP----------LG-----SAEYAPVVD-SNGWISVGSL-DGLLYSFS  298 (626)
Q Consensus       237 ~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~----------l~-----~~~sspvvD-~dG~IWVGT~-~gGLy~~d  298 (626)
                      .+|+|||+...+..+..+++ +|.+......+.          +.     .....++++ .+|+|||+.. ++.|.+++
T Consensus       353 ~~g~lyvaD~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~  430 (433)
T 4hw6_A          353 DEYDFYFCDRDSHTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIA  430 (433)
T ss_dssp             CCEEEEEEETTTTEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred             CCCcEEEEECCCCEEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEe
Confidence            89999999877788988985 776543321110          00     113457788 7899999874 34555554

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.84  E-value=0.01  Score=63.05  Aligned_cols=226  Identities=13%  Similarity=0.030  Sum_probs=130.4

Q ss_pred             eeCCEEEEEeCCcEEEEcCCC-CEEEEEeCCCCCCcccCeEEe-cCCeEEEEE--CCeEEEEECCCCccccceeEEEecC
Q 006913           45 GEDGKIYACSEKTLFAFESNG-TIAWSLDLDFTCNIGTAPVHG-GTGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGT  120 (626)
Q Consensus        45 d~dG~IwIgSdggL~a~d~~G-~~~W~~~~~~~~~i~~sp~iD-~dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~  120 (626)
                      +..+.|+++..+.|..++.++ ...... ...  .....+..| .++.||+..  .+.|+++++++..     .......
T Consensus        85 ~~~~~l~~~~~~~I~~i~~~~~~~~~~~-~~~--~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~-----~~~~~~~  156 (386)
T 3v65_B           85 GPEPVLLFANRIDIRQVLPHRSEYTLLL-NNL--ENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-----VEEVVST  156 (386)
T ss_dssp             SSCCEEEEECBSCEEEECTTSCCCEEEE-CSC--SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC-----EEEEECS
T ss_pred             cccceeEeecCccceeeccCCCcEEEEe-cCC--CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC-----cEEEEeC
Confidence            345667777777899998854 322111 111  123355666 578899886  6789999988752     1111111


Q ss_pred             CCCCCCCCCeeEEEEEE-cCCeEEEEEcC-CeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCe
Q 006913          121 GSGKGGTGAIAGIAVST-SSSSVYINVKG-RALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGS  198 (626)
Q Consensus       121 ~~~~~~~~~~I~s~~~d-~dG~LwIgT~~-gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~  198 (626)
                      ..     ....+ +..+ .+++||+.... +.|..++++|...-...        .    ..+   .....+++|+.++.
T Consensus       157 ~~-----~~p~g-lavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~--------~----~~l---~~P~giavdp~~g~  215 (386)
T 3v65_B          157 GL-----ESPGG-LAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL--------W----QSL---EKPRAIALHPMEGT  215 (386)
T ss_dssp             SC-----SCCCC-EEEETTTTEEEEEETTTTEEEECBTTSCSCEEEE--------C----SSC---SCEEEEEEETTTTE
T ss_pred             CC-----CCccE-EEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEee--------c----CCC---CCCcEEEEEcCCCe
Confidence            10     11122 3345 57899887653 66888888764322110        0    000   01234677854788


Q ss_pred             EEEEcCC--CeEEEEeCCCCeEEEEEcCCCCCcceeeeee-cCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCcee
Q 006913          199 IYISNTQ--GELYSLSAHSPYFNWIQDLSSFDKAFTLTPG-NNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEY  275 (626)
Q Consensus       199 LwIGT~~--GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D-~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~s  275 (626)
                      ||+....  +.|++++.++......... .......++.| .+++||++....+.|..+|........... ..+ ....
T Consensus       216 ly~td~~~~~~I~r~~~dG~~~~~~~~~-~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~-~~~-~~P~  292 (386)
T 3v65_B          216 IYWTDWGNTPRIEASSMDGSGRRIIADT-HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS-QGL-PHPF  292 (386)
T ss_dssp             EEEEECSSSCEEEEEETTSCSCEEEECS-SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEEC-SSC-SSEE
T ss_pred             EEEeccCCCCEEEEEeCCCCCcEEEEEC-CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEE-CCC-CCce
Confidence            9988753  5799999887544333221 22334567888 578999998777789999864332222221 111 1234


Q ss_pred             eEEEeeCCeEEEEEc-CCeEEEEcC-CCCE
Q 006913          276 APVVDSNGWISVGSL-DGLLYSFSP-SGVL  303 (626)
Q Consensus       276 spvvD~dG~IWVGT~-~gGLy~~d~-~g~~  303 (626)
                      .+.++ ++.||+... ++.|.++++ +|+.
T Consensus       293 giav~-~~~ly~td~~~~~V~~~~~~~G~~  321 (386)
T 3v65_B          293 AITVF-EDSLYWTDWHTKSINSANKFTGKN  321 (386)
T ss_dssp             EEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred             EEEEE-CCEEEEeeCCCCeEEEEECCCCcc
Confidence            46666 678888764 567889984 5653

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.84  E-value=0.0058  Score=64.61  Aligned_cols=106  Identities=14%  Similarity=0.162  Sum_probs=65.1

Q ss_pred             ceEEEcCCCeEEEEcC------------------CCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCC-eEEEEEcCCC
Q 006913          189 VPVIDQCEGSIYISNT------------------QGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNG-YLYVTIPVRA  249 (626)
Q Consensus       189 spviD~~dG~LwIGT~------------------~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG-~LwVGT~~gG  249 (626)
                      ..++++ +|.+|+++.                  .|.||++++.  +.....+  .......++.+.|| .||++.....
T Consensus       169 D~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~--~l~~pNGia~spDg~~lYvadt~~~  243 (355)
T 3sre_A          169 DIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAE--GFDFANGINISPDGKYVYIAELLAH  243 (355)
T ss_dssp             EEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEE--EESSEEEEEECTTSSEEEEEEGGGT
T ss_pred             eEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEeec--CCcccCcceECCCCCEEEEEeCCCC
Confidence            367786 899999864                  2679999884  2222111  12233456777777 8999976667


Q ss_pred             EEEEEECC-CCcEEEEEecCCCCCceeeEEEee-CCeEEEEEc-C-CeEEEEcCC
Q 006913          250 LVLALDTS-SGNILWHKSVGPLGSAEYAPVVDS-NGWISVGSL-D-GLLYSFSPS  300 (626)
Q Consensus       250 ~l~alD~~-tG~~~w~~~~~~l~~~~sspvvD~-dG~IWVGT~-~-gGLy~~d~~  300 (626)
                      .+++++.. +|+........ .....-.+.+|. +|++|++.. + +.|.+++|+
T Consensus       244 ~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~  297 (355)
T 3sre_A          244 KIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE  297 (355)
T ss_dssp             EEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred             eEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence            88888753 45543211111 112344578898 599999764 3 356667775

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.83  E-value=0.00041  Score=72.58  Aligned_cols=153  Identities=12%  Similarity=0.091  Sum_probs=100.6

Q ss_pred             ceEEEcCCCeEEEEc-CCCeEEEEeCCCCeEEEEEcCCCC-------Ccceeeee---ecCCeEEEEEcC----------
Q 006913          189 VPVIDQCEGSIYISN-TQGELYSLSAHSPYFNWIQDLSSF-------DKAFTLTP---GNNGYLYVTIPV----------  247 (626)
Q Consensus       189 spviD~~dG~LwIGT-~~GgL~~ld~~tg~~~w~~~~~s~-------~~v~sI~~---D~dG~LwVGT~~----------  247 (626)
                      ++..|..++.+|++. +.+.|+.+++.++...-. ..+..       .....+..   |.+|+|||....          
T Consensus        17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~   95 (334)
T 2p9w_A           17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS   95 (334)
T ss_dssp             CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred             CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence            355664479999998 589999999987654433 22211       12356777   678999996431          


Q ss_pred             ---CCEEEEEECC---CCcEEEEEecCCC-----------CCceeeEEEeeCCeEEE-EEcC-CeEEEEcCCCC--EEEE
Q 006913          248 ---RALVLALDTS---SGNILWHKSVGPL-----------GSAEYAPVVDSNGWISV-GSLD-GLLYSFSPSGV--LNKF  306 (626)
Q Consensus       248 ---gG~l~alD~~---tG~~~w~~~~~~l-----------~~~~sspvvD~dG~IWV-GT~~-gGLy~~d~~g~--~~~~  306 (626)
                         ...++++|..   +|+..|...+...           ......+++|.+|++|| ++.. +.|++++++|+  ..|+
T Consensus        96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~  175 (334)
T 2p9w_A           96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFA  175 (334)
T ss_dssp             SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEE
T ss_pred             cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeee
Confidence               3578999988   8999998764310           01245788999999999 8888 89999999986  2344


Q ss_pred             eeccCCCCccccCceEEEEEEecCCcEEEEEeeecCeeEEe
Q 006913          307 SKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLMVVGQFSSL  347 (626)
Q Consensus       307 ~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~t~~Ggl~~~  347 (626)
                      ... +...   .-.....|....+|++.|...+ .|.|..+
T Consensus       176 ~~~-~~~~---~~~G~nGIv~~pdg~~Liv~~~-~g~L~~f  211 (334)
T 2p9w_A          176 WES-GNGG---QRPGYSGITFDPHSNKLIAFGG-PRALTAF  211 (334)
T ss_dssp             ECC-CCSS---SCCSCSEEEEETTTTEEEEESS-SSSEEEE
T ss_pred             ecC-CCcc---cccCcceEEEeCCCCEEEEEcC-CCeEEEE
Confidence            331 1111   1111235667778877766665 6666544

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.83  E-value=0.0078  Score=61.01  Aligned_cols=176  Identities=14%  Similarity=0.070  Sum_probs=110.2

Q ss_pred             cCeEEecCCeEEEEE--CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcC-CeEEEEeCC
Q 006913           81 TAPVHGGTGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKG-RALFAFMTH  157 (626)
Q Consensus        81 ~sp~iD~dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~-gGL~a~d~~  157 (626)
                      ..+..+ ++.||+++  ++.|.++|+++++..   ... .+.        ...+--+...+++||+.++. +-++.||+.
T Consensus        58 qGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~---~~~-l~~--------~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~  124 (268)
T 3nok_A           58 QGLVFH-QGHFFESTGHQGTLRQLSLESAQPV---WME-RLG--------NIFAEGLASDGERLYQLTWTEGLLFTWSGM  124 (268)
T ss_dssp             EEEEEE-TTEEEEEETTTTEEEECCSSCSSCS---EEE-ECT--------TCCEEEEEECSSCEEEEESSSCEEEEEETT
T ss_pred             ceEEEE-CCEEEEEcCCCCEEEEEECCCCcEE---eEE-CCC--------CcceeEEEEeCCEEEEEEccCCEEEEEECC
Confidence            345554 58999998  567999999987531   111 221        12222223357899999865 557889975


Q ss_pred             -CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCC----CCccee
Q 006913          158 -GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSS----FDKAFT  232 (626)
Q Consensus       158 -G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s----~~~v~s  232 (626)
                       ++.+-.+       .+.   ..       -..+..|  ++.||++...+.|+.+|+++.++.-......    ......
T Consensus       125 Tl~~~~ti-------~~~---~e-------GwGLt~D--g~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNe  185 (268)
T 3nok_A          125 PPQRERTT-------RYS---GE-------GWGLCYW--NGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINE  185 (268)
T ss_dssp             TTEEEEEE-------ECS---SC-------CCCEEEE--TTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred             cCcEEEEE-------eCC---Cc-------eeEEecC--CCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccc
Confidence             7766554       110   00       0224456  7899999888899999999987765433221    111122


Q ss_pred             eeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCC-----------CCCceeeEEEeeC-CeEEEEE
Q 006913          233 LTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGP-----------LGSAEYAPVVDSN-GWISVGS  289 (626)
Q Consensus       233 I~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~-----------l~~~~sspvvD~d-G~IWVGT  289 (626)
                      +. -.+|.||+.......+..+|+.+|++.-......           ...+...++.|++ +++||..
T Consensus       186 Le-~~dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          186 LE-CANGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EE-EETTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             cE-EeCCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            22 2389999998767799999999999875543321           1124556777653 5677654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=97.80  E-value=0.017  Score=58.02  Aligned_cols=234  Identities=12%  Similarity=0.045  Sum_probs=130.7

Q ss_pred             eeEEeeCCE-EEEEe--CCcEEEEcC-CCCE-EEEEeCCCCCCcccCeEEecCCeEEEEE-CC----eEEEEECCCCccc
Q 006913           41 KPLIGEDGK-IYACS--EKTLFAFES-NGTI-AWSLDLDFTCNIGTAPVHGGTGEVYIVA-EN----RVLKVDLLKIGTS  110 (626)
Q Consensus        41 spvid~dG~-IwIgS--dggL~a~d~-~G~~-~W~~~~~~~~~i~~sp~iD~dG~IwVgT-~g----gL~~id~~~~~~~  110 (626)
                      .+.++.+|. +|++.  ++.++.+|. +++. ........  .....+..+.+|+..++. .+    .|..+|..++.. 
T Consensus        44 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~-  120 (331)
T 3u4y_A           44 DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQ--SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKF-  120 (331)
T ss_dssp             EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECS--SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEE-
T ss_pred             eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCC--CCccceEECCCCCEEEEecCCCCcccEEEEECCCCCe-
Confidence            666767775 88876  457999998 7765 43333221  122236777888744444 33    799999887631 


Q ss_pred             cceeEEEecCCCCCCCCCCeeEEEEEEcCCe-EEEEEcC-Ce-EEEEeC--CCcEEEEECCcccccccccccccCCCCCc
Q 006913          111 ESATQVFYGTGSGKGGTGAIAGIAVSTSSSS-VYINVKG-RA-LFAFMT--HGQLLWSAGPVLDQLGYRQGCTKTDVDCY  185 (626)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~-LwIgT~~-gG-L~a~d~--~G~~~w~~~~~~~~~~~~~~~~~~l~~~~  185 (626)
                          ...+..       +.....+....+|+ ||++... +. +..++.  +|...... .  ....      .   +..
T Consensus       121 ----~~~~~~-------~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-~--~~~~------~---~~~  177 (331)
T 3u4y_A          121 ----ISTIPI-------PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG-Q--EFIS------G---GTR  177 (331)
T ss_dssp             ----EEEEEC-------CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE-E--EEEC------S---SSS
T ss_pred             ----EEEEEC-------CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC-C--cccc------C---CCC
Confidence                111111       11123444556664 8887554 56 666664  35442210 0  0000      0   001


Q ss_pred             cccceEEEcCCCe-EEEEcC-CCeEEEEeCCCCeE---EEEEcCCCCCcceeeeeecCCe-EEEEEcCCCEEEEEECCCC
Q 006913          186 FTSVPVIDQCEGS-IYISNT-QGELYSLSAHSPYF---NWIQDLSSFDKAFTLTPGNNGY-LYVTIPVRALVLALDTSSG  259 (626)
Q Consensus       186 i~sspviD~~dG~-LwIGT~-~GgL~~ld~~tg~~---~w~~~~~s~~~v~sI~~D~dG~-LwVGT~~gG~l~alD~~tG  259 (626)
                       ...+.+++ +|. +|++.. ++.|..+|.++++.   .......  ..+..++.+.||+ ||++....+.+..+|..++
T Consensus       178 -~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~--~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~  253 (331)
T 3u4y_A          178 -PFNITFTP-DGNFAFVANLIGNSIGILETQNPENITLLNAVGTN--NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG  253 (331)
T ss_dssp             -EEEEEECT-TSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS--SCCCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred             -ccceEECC-CCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC--CCCceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence             13355665 554 888764 67799999988876   4333322  2334566777886 8887654567888999888


Q ss_pred             cEEEE--EecC--CCCCc---eeeEEEeeCC-eEEEEEcC-CeEEEEcCCCCEE
Q 006913          260 NILWH--KSVG--PLGSA---EYAPVVDSNG-WISVGSLD-GLLYSFSPSGVLN  304 (626)
Q Consensus       260 ~~~w~--~~~~--~l~~~---~sspvvD~dG-~IWVGT~~-gGLy~~d~~g~~~  304 (626)
                      +....  ....  .....   ...+...++| .||++..+ +.|..++..+...
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~  307 (331)
T 3u4y_A          254 TLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV  307 (331)
T ss_dssp             EEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred             ceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence            87332  2211  00011   1235666666 47887754 4677888655443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.80  E-value=0.0045  Score=66.85  Aligned_cols=226  Identities=11%  Similarity=0.085  Sum_probs=126.8

Q ss_pred             CeEEe--cCCeEEEEE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCe-EEEEEcCC-----eEE
Q 006913           82 APVHG--GTGEVYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSS-VYINVKGR-----ALF  152 (626)
Q Consensus        82 sp~iD--~dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~-LwIgT~~g-----GL~  152 (626)
                      .+.+|  .+|+||++. .+.|.++|++++..     ......       ......+..+.+|+ ||++...+     .++
T Consensus       141 ~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v-----~~~~~~-------~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~  208 (430)
T 3tc9_A          141 WLSFDPKNHNHLYLVGEQHPTRLIDFEKEYV-----STVYSG-------LSKVRTICWTHEADSMIITNDQNNNDRPNNY  208 (430)
T ss_dssp             EEEEETTEEEEEEEEEBTEEEEEEETTTTEE-----EEEECC-------CSCEEEEEECTTSSEEEEEECCSCTTSEEEE
T ss_pred             EEEECCCCCCeEEEEeCCCcEEEEECCCCEE-----EEEecC-------CCCcceEEEeCCCCEEEEEeCCCCcccceEE
Confidence            45678  468999987 48899999987531     111110       11223344566666 99987532     466


Q ss_pred             EEeCCCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcC-CCeEEEEeCCCCeEEEEEcCCCCCcce
Q 006913          153 AFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT-QGELYSLSAHSPYFNWIQDLSSFDKAF  231 (626)
Q Consensus       153 a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~-~GgL~~ld~~tg~~~w~~~~~s~~~v~  231 (626)
                      .++++|...... . +..+.             -...+++++.+|.||++.. ++.|++++++++........+......
T Consensus       209 ~~~~~g~~~~~~-~-l~~~~-------------~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~  273 (430)
T 3tc9_A          209 ILTRESGFKVIT-E-LTKGQ-------------NCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEF  273 (430)
T ss_dssp             EEEGGGTSCSEE-E-EEECS-------------SCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCE
T ss_pred             EEeCCCceeeee-e-eccCC-------------CceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcce
Confidence            677665432110 0 00000             0123566643789999875 578999999987653222222222345


Q ss_pred             eeeeecCCe-EEEEEcCCCEEEEEECC--CCcEE----EEEecCC--CC-------Cc--ee-eEEE--------eeCCe
Q 006913          232 TLTPGNNGY-LYVTIPVRALVLALDTS--SGNIL----WHKSVGP--LG-------SA--EY-APVV--------DSNGW  284 (626)
Q Consensus       232 sI~~D~dG~-LwVGT~~gG~l~alD~~--tG~~~----w~~~~~~--l~-------~~--~s-spvv--------D~dG~  284 (626)
                      .++.+.+|+ ||+.......++.++..  ++.+.    ..-..+.  ..       .+  .. .+++        |.+|+
T Consensus       274 gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~  353 (430)
T 3tc9_A          274 HIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYD  353 (430)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEE
T ss_pred             eEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCe
Confidence            678888887 99998766788776532  33321    1111010  00       00  11 2334        35689


Q ss_pred             EEEEEc-CCeEEEEcCCCCEEEEeecc----CC--CC-----ccccCceEEEEEEec-CCcEEEE
Q 006913          285 ISVGSL-DGLLYSFSPSGVLNKFSKSD----TS--DS-----VIQSSPYWFHLLGPS-IGLKAIL  336 (626)
Q Consensus       285 IWVGT~-~gGLy~~d~~g~~~~~~~~~----~~--~~-----~ilssp~V~~Il~Ds-dG~IwI~  336 (626)
                      |||... ++.|.+++++|.+.......    ..  ++     ..+..|  ..|..|. +|.|||.
T Consensus       354 lyvaD~~n~~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P--~giavd~~~g~lyVa  416 (430)
T 3tc9_A          354 FYFCDRENHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHP--EGIVYDEERECFFIG  416 (430)
T ss_dssp             EEEEEGGGTEEEEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSE--EEEEEETTTTEEEEE
T ss_pred             EEEEECCCcEEEEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCC--cEEEEECCCCEEEEE
Confidence            999974 56899999988765543310    00  11     001223  4688887 6999965

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.79  E-value=0.023  Score=58.61  Aligned_cols=264  Identities=11%  Similarity=0.061  Sum_probs=129.3

Q ss_pred             CccccccccceeeeeccCCCccccc--cCCceeeeeEEeeCCEEEEEe-CCcEEEEcCCCCEEEEEeCCC---CCCcccC
Q 006913            9 FHSYRSCFPFLTFASFSSSAKVPYR--RSAFRLSKPLIGEDGKIYACS-EKTLFAFESNGTIAWSLDLDF---TCNIGTA   82 (626)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sspvid~dG~IwIgS-dggL~a~d~~G~~~W~~~~~~---~~~i~~s   82 (626)
                      .|+.-+.||..++.|--....+...  +.............+.+|++. .+.|++-...|+ .|......   ....+.+
T Consensus         6 ~~~~~~~~~~~~~~s~d~g~~W~~~~~~~~~~~~~v~~~~~~~~~~~G~~g~i~~s~DgG~-tW~~~~~~~~~~~~~~~~   84 (327)
T 2xbg_A            6 HHHHHGLVPRGSAIPALDYNPWEAIQLPTTATILDMSFIDRHHGWLVGVNATLMETRDGGQ-TWEPRTLVLDHSDYRFNS   84 (327)
T ss_dssp             ------------CCCBCSSCCEEEEECSCSSCEEEEEESSSSCEEEEETTTEEEEESSTTS-SCEECCCCCSCCCCEEEE
T ss_pred             cccccCccccceeecCCCCCCceEeecCCCCcEEEEEECCCCcEEEEcCCCeEEEeCCCCC-CCeECCCCCCCCCccEEE
Confidence            3566677777777666655544222  222333444444567788765 455655443343 56543221   0112345


Q ss_pred             eEEecCCeEEEEE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCCCcEE
Q 006913           83 PVHGGTGEVYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTHGQLL  161 (626)
Q Consensus        83 p~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~G~~~  161 (626)
                      +..+. +.+|++. .++|++ ..+.+.      .|....... ...+.. ..+....++.+|+++..++|+.-.-.|+ .
T Consensus        85 i~~~~-~~~~~~g~~g~i~~-S~DgG~------tW~~~~~~~-~~~~~~-~~i~~~~~~~~~~~~~~g~v~~S~DgG~-t  153 (327)
T 2xbg_A           85 VSFQG-NEGWIVGEPPIMLH-TTDGGQ------SWSQIPLDP-KLPGSP-RLIKALGNGSAEMITNVGAIYRTKDSGK-N  153 (327)
T ss_dssp             EEEET-TEEEEEEETTEEEE-ESSTTS------SCEECCCCT-TCSSCE-EEEEEEETTEEEEEETTCCEEEESSTTS-S
T ss_pred             EEecC-CeEEEEECCCeEEE-ECCCCC------CceECcccc-CCCCCe-EEEEEECCCCEEEEeCCccEEEEcCCCC-C
Confidence            55554 7888876 566665 455443      232211110 011222 3333446788999887666665433354 4


Q ss_pred             EEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEc-CCCCCcceeeeeecCCe
Q 006913          162 WSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQD-LSSFDKAFTLTPGNNGY  240 (626)
Q Consensus       162 w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~-~~s~~~v~sI~~D~dG~  240 (626)
                      |....    .+        .. ..+ ..+..+. ++.+|+....|+++.-+-.+| ..|... ......+..++.+.+|+
T Consensus       154 W~~~~----~~--------~~-~~~-~~~~~~~-~~~~~~~g~~G~~~~S~d~gG-~tW~~~~~~~~~~~~~~~~~~~g~  217 (327)
T 2xbg_A          154 WQALV----QE--------AI-GVM-RNLNRSP-SGEYVAVSSRGSFYSTWEPGQ-TAWEPHNRTTSRRLHNMGFTPDGR  217 (327)
T ss_dssp             EEEEE----CS--------CC-CCE-EEEEECT-TSCEEEEETTSSEEEEECTTC-SSCEEEECCSSSCEEEEEECTTSC
T ss_pred             CEEee----cC--------CC-cce-EEEEEcC-CCcEEEEECCCcEEEEeCCCC-CceeECCCCCCCccceeEECCCCC
Confidence            76310    00        00 112 2344554 778887766777877643222 235432 11122345666778899


Q ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEecCC-C-C-CceeeEEEeeCCeEEEEEcCCeEEEEcCCCC
Q 006913          241 LYVTIPVRALVLALDTSSGNILWHKSVGP-L-G-SAEYAPVVDSNGWISVGSLDGLLYSFSPSGV  302 (626)
Q Consensus       241 LwVGT~~gG~l~alD~~tG~~~w~~~~~~-l-~-~~~sspvvD~dG~IWVGT~~gGLy~~d~~g~  302 (626)
                      +|+++. +|.++.-+ .++-..|.....+ + . ..+..+..++++.+|+++.++.|++-...|+
T Consensus       218 ~~~~~~-~G~~~~s~-~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i~~S~DgG~  280 (327)
T 2xbg_A          218 LWMIVN-GGKIAFSD-PDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALLCSQDGGQ  280 (327)
T ss_dssp             EEEEET-TTEEEEEE-TTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCEEEESSTTS
T ss_pred             EEEEeC-CceEEEec-CCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeEEEeCCCCc
Confidence            999885 45665442 2444567532211 1 1 1234455666789999988777876544453

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.73  E-value=0.095  Score=59.66  Aligned_cols=237  Identities=9%  Similarity=-0.057  Sum_probs=133.9

Q ss_pred             eeeeEEeeCCEE-EEEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCe-EEEEE-CCeEEEEECCCCccccce
Q 006913           39 LSKPLIGEDGKI-YACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGE-VYIVA-ENRVLKVDLLKIGTSESA  113 (626)
Q Consensus        39 ~Sspvid~dG~I-wIgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~-IwVgT-~ggL~~id~~~~~~~~~~  113 (626)
                      ........+|.. .+|+ ++.+..+|. +|.....+....  ..+.++....+|. |.+++ ++.|..+|..++..    
T Consensus        16 v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~----   89 (814)
T 3mkq_A           16 VKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTE--TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK----   89 (814)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCS--SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE----
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCC--CcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE----
Confidence            334445456654 4455 567888886 777655444221  2344556666666 44455 68888899877631    


Q ss_pred             eEEEecCCCCCCCCCCeeEEEEEEcCC-eEEEEEcCCeEEEEeCC-C-cEEEEECCcccccccccccccCCCCCccccce
Q 006913          114 TQVFYGTGSGKGGTGAIAGIAVSTSSS-SVYINVKGRALFAFMTH-G-QLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVP  190 (626)
Q Consensus       114 ~~~~~~~~~~~~~~~~~I~s~~~d~dG-~LwIgT~~gGL~a~d~~-G-~~~w~~~~~~~~~~~~~~~~~~l~~~~i~ssp  190 (626)
                       ...+..     . ...+..+....++ .|..++.++.+..++.. + .......      +      +   ...+ .++
T Consensus        90 -~~~~~~-----~-~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~------~------~---~~~v-~~~  146 (814)
T 3mkq_A           90 -VVDFEA-----H-PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE------G------H---EHFV-MCV  146 (814)
T ss_dssp             -EEEEEC-----C-SSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEE------C------C---SSCE-EEE
T ss_pred             -EEEEec-----C-CCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEc------C------C---CCcE-EEE
Confidence             122211     1 1234444444444 57777777888888864 4 2222210      0      0   0111 223


Q ss_pred             EEEc-CCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeec--CC-eEEEEEcCCCEEEEEECCCCcEEEEEe
Q 006913          191 VIDQ-CEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGN--NG-YLYVTIPVRALVLALDTSSGNILWHKS  266 (626)
Q Consensus       191 viD~-~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~--dG-~LwVGT~~gG~l~alD~~tG~~~w~~~  266 (626)
                      ...+ .+..|..++.+|.|..+|..++.............+..+....  +| .|.+++ .++.+..+|..++.......
T Consensus       147 ~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~  225 (814)
T 3mkq_A          147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQTKSCVATLE  225 (814)
T ss_dssp             EEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEEC-TTSEEEEEETTTTEEEEEEE
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEe-CCCEEEEEECCCCcEEEEEc
Confidence            3332 1346777888888999998776654443322112233333333  56 455555 56788889988888766544


Q ss_pred             cCCCCCceeeEEEeeCC-eEEEEEcCCeEEEEcCC-CCEEEEe
Q 006913          267 VGPLGSAEYAPVVDSNG-WISVGSLDGLLYSFSPS-GVLNKFS  307 (626)
Q Consensus       267 ~~~l~~~~sspvvD~dG-~IWVGT~~gGLy~~d~~-g~~~~~~  307 (626)
                      ..  ...+..+...++| .|..|+.++.|..+|.. ++.....
T Consensus       226 ~~--~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~  266 (814)
T 3mkq_A          226 GH--MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL  266 (814)
T ss_dssp             CC--SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred             CC--CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence            32  1234556666666 57778888899999975 5555443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.73  E-value=0.015  Score=58.84  Aligned_cols=175  Identities=13%  Similarity=0.025  Sum_probs=107.7

Q ss_pred             CCeEEEEEcCC---eEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcC-CCeEEEEeC
Q 006913          139 SSSVYINVKGR---ALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT-QGELYSLSA  213 (626)
Q Consensus       139 dG~LwIgT~~g---GL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~-~GgL~~ld~  213 (626)
                      ++.||+++-..   .|..+|+. |+.+-..     .++          ...+.-.+..+  ++.||+.++ ++-++.+|+
T Consensus        52 ~~~LyestG~~g~S~v~~vD~~Tgkv~~~~-----~l~----------~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~  114 (262)
T 3nol_A           52 NGYFYESTGLNGRSSIRKVDIESGKTLQQI-----ELG----------KRYFGEGISDW--KDKIVGLTWKNGLGFVWNI  114 (262)
T ss_dssp             TTEEEEEEEETTEEEEEEECTTTCCEEEEE-----ECC----------TTCCEEEEEEE--TTEEEEEESSSSEEEEEET
T ss_pred             CCEEEEECCCCCCceEEEEECCCCcEEEEE-----ecC----------CccceeEEEEe--CCEEEEEEeeCCEEEEEEC
Confidence            78999998543   58999985 8876553     111          01121123455  789999997 567899999


Q ss_pred             CCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCC---ceeeEEEeeCCeEEEEEc
Q 006913          214 HSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGS---AEYAPVVDSNGWISVGSL  290 (626)
Q Consensus       214 ~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~---~~sspvvD~dG~IWVGT~  290 (626)
                      ++.+..-..+.+..  -..++.| .++||+.. +...+..+|+.+.++.-.......+.   ....+... +|.||+..+
T Consensus       115 ~t~~~~~ti~~~~e--G~glt~d-g~~L~~Sd-Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w  189 (262)
T 3nol_A          115 RNLRQVRSFNYDGE--GWGLTHN-DQYLIMSD-GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVW  189 (262)
T ss_dssp             TTCCEEEEEECSSC--CCCEEEC-SSCEEECC-SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred             ccCcEEEEEECCCC--ceEEecC-CCEEEEEC-CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEc
Confidence            99887765444321  1234444 46888875 46789999999998876554431111   12223333 899999985


Q ss_pred             -CCeEEEEcCC-CCEEEEeeccC----CCCccccCceEEEEEEecC-CcEEE
Q 006913          291 -DGLLYSFSPS-GVLNKFSKSDT----SDSVIQSSPYWFHLLGPSI-GLKAI  335 (626)
Q Consensus       291 -~gGLy~~d~~-g~~~~~~~~~~----~~~~ilssp~V~~Il~Dsd-G~IwI  335 (626)
                       .+.|+++|+. |++........    ...........+.|..|.+ +++|+
T Consensus       190 ~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfV  241 (262)
T 3nol_A          190 QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFV  241 (262)
T ss_dssp             TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEE
T ss_pred             cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEE
Confidence             6789999985 88765443210    0000012234567887764 55653

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=97.72  E-value=0.049  Score=54.39  Aligned_cols=237  Identities=12%  Similarity=0.012  Sum_probs=131.7

Q ss_pred             eeeeEEeeCCEEEE-Ee-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEE-EE-CCeEEEEECCCCccccce
Q 006913           39 LSKPLIGEDGKIYA-CS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYI-VA-ENRVLKVDLLKIGTSESA  113 (626)
Q Consensus        39 ~Sspvid~dG~IwI-gS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwV-gT-~ggL~~id~~~~~~~~~~  113 (626)
                      ........+|.+.+ |+ ++.+..++. +++....+....  ..+.++....++++.+ +. ++.|..+|..++..    
T Consensus        26 v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~----   99 (312)
T 4ery_A           26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC----   99 (312)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE----
T ss_pred             EEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCC--CceEEEEEcCCCCEEEEECCCCEEEEEECCCCcE----
Confidence            34445556665444 55 567888887 777654332211  2234555666777555 44 67888889877531    


Q ss_pred             eEEEecCCCCCCCCCCeeEEEEEEcC-CeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceE
Q 006913          114 TQVFYGTGSGKGGTGAIAGIAVSTSS-SSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPV  191 (626)
Q Consensus       114 ~~~~~~~~~~~~~~~~~I~s~~~d~d-G~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspv  191 (626)
                       ...+..     . ...+.......+ ..|..++.++.|..+|.. ++.......            +   ... ..++.
T Consensus       100 -~~~~~~-----~-~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~------------~---~~~-v~~~~  156 (312)
T 4ery_A          100 -LKTLKG-----H-SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA------------H---SDP-VSAVH  156 (312)
T ss_dssp             -EEEEEC-----C-SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC------------C---SSC-EEEEE
T ss_pred             -EEEEcC-----C-CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecC------------C---CCc-EEEEE
Confidence             111111     1 123333333334 456667778889999975 766544310            0   011 13344


Q ss_pred             EEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCe-EEEEEcCCCEEEEEECCCCcEEEEEecCCC
Q 006913          192 IDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGY-LYVTIPVRALVLALDTSSGNILWHKSVGPL  270 (626)
Q Consensus       192 iD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~-LwVGT~~gG~l~alD~~tG~~~w~~~~~~l  270 (626)
                      ..+.+..|..|+.++.|..+|.++++............+..+....+|. |.+++ .++.+..+|..+++....+.....
T Consensus       157 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~  235 (312)
T 4ery_A          157 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDYSKGKCLKTYTGHKN  235 (312)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE-TTTEEEEEETTTTEEEEEECSSCC
T ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEc-CCCeEEEEECCCCcEEEEEEecCC
Confidence            4432445777888889999999887765433221122344556666775 44555 467888899988887655432211


Q ss_pred             CC--ceeeEEEeeCCeEEEEEcCCeEEEEcCC-CCEEE
Q 006913          271 GS--AEYAPVVDSNGWISVGSLDGLLYSFSPS-GVLNK  305 (626)
Q Consensus       271 ~~--~~sspvvD~dG~IWVGT~~gGLy~~d~~-g~~~~  305 (626)
                      ..  .........+..|..|+.++.|+.+|.. ++...
T Consensus       236 ~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~  273 (312)
T 4ery_A          236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ  273 (312)
T ss_dssp             SSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEE
T ss_pred             ceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhh
Confidence            11  1111122223456677788899999975 55443

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=97.72  E-value=0.044  Score=53.88  Aligned_cols=185  Identities=12%  Similarity=0.045  Sum_probs=115.6

Q ss_pred             CeEEecCCeEEEEE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEE-cCCeEEEEEcCCeEEEEeCCCc
Q 006913           82 APVHGGTGEVYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVST-SSSSVYINVKGRALFAFMTHGQ  159 (626)
Q Consensus        82 sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d-~dG~LwIgT~~gGL~a~d~~G~  159 (626)
                      ++..+ .+.+..++ ++.|..+|...       ....+..     ....+....... .+..+..++.++.|..+|.. +
T Consensus       109 ~~~~~-~~~l~~~~~d~~i~~~d~~~-------~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~-~  174 (313)
T 3odt_A          109 SLSFQ-DGVVISGSWDKTAKVWKEGS-------LVYNLQA-----HNASVWDAKVVSFSENKFLTASADKTIKLWQND-K  174 (313)
T ss_dssp             EEEEE-TTEEEEEETTSEEEEEETTE-------EEEEEEC-----CSSCEEEEEEEETTTTEEEEEETTSCEEEEETT-E
T ss_pred             EEEec-CCEEEEEeCCCCEEEEcCCc-------EEEeccc-----CCCceeEEEEccCCCCEEEEEECCCCEEEEecC-c
Confidence            34443 34555566 67888888322       1222211     112233333344 56677788888888888843 3


Q ss_pred             EEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCC
Q 006913          160 LLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNG  239 (626)
Q Consensus       160 ~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG  239 (626)
                      .......       .    .   ... ...+...+ ++.+..++.++.|..+|.++++........ ...+.++....+|
T Consensus       175 ~~~~~~~-------~----~---~~~-i~~~~~~~-~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~  237 (313)
T 3odt_A          175 VIKTFSG-------I----H---NDV-VRHLAVVD-DGHFISCSNDGLIKLVDMHTGDVLRTYEGH-ESFVYCIKLLPNG  237 (313)
T ss_dssp             EEEEECS-------S----C---SSC-EEEEEEEE-TTEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEECTTS
T ss_pred             eEEEEec-------c----C---ccc-EEEEEEcC-CCeEEEccCCCeEEEEECCchhhhhhhhcC-CceEEEEEEecCC
Confidence            3222200       0    0   011 23344554 777889999999999999988776554321 2346677777788


Q ss_pred             eEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEEEEEcCCeEEEEcCC
Q 006913          240 YLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPS  300 (626)
Q Consensus       240 ~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~  300 (626)
                      .|..++. ++.+..+|..+++........  ...+..+...++|.+.+++.++.|..++..
T Consensus       238 ~l~~~~~-dg~v~iwd~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~  295 (313)
T 3odt_A          238 DIVSCGE-DRTVRIWSKENGSLKQVITLP--AISIWSVDCMSNGDIIVGSSDNLVRIFSQE  295 (313)
T ss_dssp             CEEEEET-TSEEEEECTTTCCEEEEEECS--SSCEEEEEECTTSCEEEEETTSCEEEEESC
T ss_pred             CEEEEec-CCEEEEEECCCCceeEEEecc--CceEEEEEEccCCCEEEEeCCCcEEEEeCC
Confidence            8888874 578999999999887665443  123556777778889999999999998864

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.72  E-value=0.051  Score=55.68  Aligned_cols=226  Identities=10%  Similarity=0.011  Sum_probs=124.8

Q ss_pred             EEEEeCCcEEEEcCCC-CEEEEEeCCCCCCcccCeEEec-CCeEEEEE--CCeEEEEECCCCccccceeEEEecCCCCCC
Q 006913           50 IYACSEKTLFAFESNG-TIAWSLDLDFTCNIGTAPVHGG-TGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGSGKG  125 (626)
Q Consensus        50 IwIgSdggL~a~d~~G-~~~W~~~~~~~~~i~~sp~iD~-dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~~~~  125 (626)
                      |++++.+.|..++.++ ...-... ..  ....++..|. ++.||++.  .+.|+++++++...... ........    
T Consensus         4 ll~~~~~~I~~i~~~~~~~~~~~~-~~--~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~-~~~~~~~~----   75 (316)
T 1ijq_A            4 LFFTNRHEVRKMTLDRSEYTSLIP-NL--RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS-YDTVISRD----   75 (316)
T ss_dssp             EEEECBSSEEEEETTSCCCEEEEC-SC--SSEEEEEEETTTTEEEEEETTTTEEEEEEC---------CEEEECSS----
T ss_pred             EEEECCCeEEEEECCCcceEehhc-CC--CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcc-cEEEEeCC----
Confidence            4556666788888733 3221121 11  1233566775 57899886  57899999876100000 11111110    


Q ss_pred             CCCCeeEEEEEE-cCCeEEEEEc-CCeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEc
Q 006913          126 GTGAIAGIAVST-SSSSVYINVK-GRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISN  203 (626)
Q Consensus       126 ~~~~~I~s~~~d-~dG~LwIgT~-~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT  203 (626)
                      . ... ..+..+ .+++||+... .+.|..++.+|........        .    .+   .....+++|+.++.||+..
T Consensus        76 ~-~~p-~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~--------~----~~---~~P~~iavdp~~g~ly~~d  138 (316)
T 1ijq_A           76 I-QAP-DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR--------E----NG---SKPRAIVVDPVHGFMYWTD  138 (316)
T ss_dssp             C-SCC-CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE--------C----TT---CCEEEEEEETTTTEEEEEE
T ss_pred             C-CCc-CEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEE--------C----CC---CCcceEEeCCCCCEEEEEc
Confidence            0 111 233445 5789998754 4778899988654322100        0    00   0123467784478899887


Q ss_pred             CC--CeEEEEeCCCCeEEEEEcCCCCCcceeeeee-cCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEe
Q 006913          204 TQ--GELYSLSAHSPYFNWIQDLSSFDKAFTLTPG-NNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVD  280 (626)
Q Consensus       204 ~~--GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D-~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD  280 (626)
                      ..  +.|++++.++......... .......++.| .+++||++......+..+|.....................+.++
T Consensus       139 ~~~~~~I~~~~~dG~~~~~~~~~-~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~  217 (316)
T 1ijq_A          139 WGTPAKIKKGGLNGVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF  217 (316)
T ss_dssp             CSSSCEEEEEETTSCCEEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE
T ss_pred             cCCCCeEEEEcCCCCCeEEEEEC-CCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE
Confidence            63  6899999887544322221 22334567888 46799999876678999996533222212221101123456677


Q ss_pred             eCCeEEEEEc-CCeEEEEcC-CCC
Q 006913          281 SNGWISVGSL-DGLLYSFSP-SGV  302 (626)
Q Consensus       281 ~dG~IWVGT~-~gGLy~~d~-~g~  302 (626)
                       ++.||+... ++.|+++++ +|+
T Consensus       218 -~~~ly~~d~~~~~V~~~~~~~g~  240 (316)
T 1ijq_A          218 -EDKVFWTDIINEAIFSANRLTGS  240 (316)
T ss_dssp             -TTEEEEEETTTTEEEEEETTTCC
T ss_pred             -CCEEEEEECCCCeEEEEeCCCCc
Confidence             688888764 467899987 454

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=97.71  E-value=0.057  Score=54.96  Aligned_cols=255  Identities=11%  Similarity=-0.023  Sum_probs=137.8

Q ss_pred             EEEEe-CCcEEEEcC-CCCE--EEEEeCCCCCCcccCeEEecCCeEEEE-E-CCeEEEEECCCCccccceeEEEecCCCC
Q 006913           50 IYACS-EKTLFAFES-NGTI--AWSLDLDFTCNIGTAPVHGGTGEVYIV-A-ENRVLKVDLLKIGTSESATQVFYGTGSG  123 (626)
Q Consensus        50 IwIgS-dggL~a~d~-~G~~--~W~~~~~~~~~i~~sp~iD~dG~IwVg-T-~ggL~~id~~~~~~~~~~~~~~~~~~~~  123 (626)
                      |..|+ ++.+..++. ++..  .|...- . ...+.++....++.+.+. + ++.|...|..++..     ...+...  
T Consensus        51 l~tgs~D~~v~vW~~~~~~~~~~~~l~g-h-~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~-----~~~~~~~--  121 (321)
T 3ow8_A           51 VVTGSLDDLVKVWKWRDERLDLQWSLEG-H-QLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQ-----IKSIDAG--  121 (321)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEECC-C-SSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-----EEEEECC--
T ss_pred             EEEEcCCCCEEEEECCCCCeeeeeeecc-C-CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCE-----EEEEeCC--
Confidence            44455 566666665 4432  343321 1 122334445566665554 3 78888889877631     1111111  


Q ss_pred             CCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEE
Q 006913          124 KGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYIS  202 (626)
Q Consensus       124 ~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIG  202 (626)
                         ...+........+..|..++.++.+..++.. ++..+....       .        ... ..++...+.+..|..|
T Consensus       122 ---~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~-------~--------~~~-v~~~~~spdg~~lasg  182 (321)
T 3ow8_A          122 ---PVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDT-------R--------GKF-ILSIAYSPDGKYLASG  182 (321)
T ss_dssp             ---TTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEEC-------S--------SSC-EEEEEECTTSSEEEEE
T ss_pred             ---CccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecC-------C--------Cce-EEEEEECCCCCEEEEE
Confidence               1111122222233456667777888888864 766554310       0        011 2334454424457778


Q ss_pred             cCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeC
Q 006913          203 NTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSN  282 (626)
Q Consensus       203 T~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~d  282 (626)
                      +.++.|..+|.++++....... ....+.++....+|.+.+....++.+..+|..++.........  ...+.++...++
T Consensus       183 ~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~~sp~  259 (321)
T 3ow8_A          183 AIDGIINIFDIATGKLLHTLEG-HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH--ASWVLNVAFCPD  259 (321)
T ss_dssp             ETTSCEEEEETTTTEEEEEECC-CSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCC--SSCEEEEEECTT
T ss_pred             cCCCeEEEEECCCCcEEEEEcc-cCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCC--CCceEEEEECCC
Confidence            8888899999999876554321 1223556666777765554445577888898888766443221  123455666666


Q ss_pred             C-eEEEEEcCCeEEEEcCC-CCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEEeeecCee
Q 006913          283 G-WISVGSLDGLLYSFSPS-GVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLMVVGQF  344 (626)
Q Consensus       283 G-~IWVGT~~gGLy~~d~~-g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~t~~Ggl  344 (626)
                      | .|..|+.++.|..+|.. ++......        .....|.++....+|... .++...|.+
T Consensus       260 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~--------~h~~~v~~v~~s~~g~~l-~s~~~d~~i  314 (321)
T 3ow8_A          260 DTHFVSSSSDKSVKVWDVGTRTCVHTFF--------DHQDQVWGVKYNGNGSKI-VSVGDDQEI  314 (321)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEEEEC--------CCSSCEEEEEECTTSSEE-EEEETTCCE
T ss_pred             CCEEEEEeCCCcEEEEeCCCCEEEEEEc--------CCCCcEEEEEECCCCCEE-EEEeCCCeE
Confidence            5 56677888889999875 44333222        012235556556666653 333333333

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.71  E-value=0.023  Score=59.40  Aligned_cols=194  Identities=10%  Similarity=-0.002  Sum_probs=114.4

Q ss_pred             eeeEEe-eCCEEEEEe--CCcEEEEcCCCCEEEEEeCCCCCCcccCeEEec-CCeEEEEE--CCeEEEEECCCCccccce
Q 006913           40 SKPLIG-EDGKIYACS--EKTLFAFESNGTIAWSLDLDFTCNIGTAPVHGG-TGEVYIVA--ENRVLKVDLLKIGTSESA  113 (626)
Q Consensus        40 Sspvid-~dG~IwIgS--dggL~a~d~~G~~~W~~~~~~~~~i~~sp~iD~-dG~IwVgT--~ggL~~id~~~~~~~~~~  113 (626)
                      ..+..| .++.||+..  .+.|++++.+|...-...... ......+.+|. .|+||+..  .+.|.+++.++..     
T Consensus        76 ~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~-~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-----  149 (349)
T 3v64_C           76 IALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG-LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-----  149 (349)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-----
T ss_pred             EEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCC-CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc-----
Confidence            344555 468888875  467888887553211111111 01223567784 78899886  5789999987642     


Q ss_pred             eEEEecCCCCCCCCCCeeEEEEEE-cCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccce
Q 006913          114 TQVFYGTGSGKGGTGAIAGIAVST-SSSSVYINVKG--RALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVP  190 (626)
Q Consensus       114 ~~~~~~~~~~~~~~~~~I~s~~~d-~dG~LwIgT~~--gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~ssp  190 (626)
                      ........     .... ..+..+ .+|.||+....  +.|++++.+|.......        .    ..+   .....+
T Consensus       150 ~~~l~~~~-----l~~P-~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~--------~----~~~---~~PnGl  208 (349)
T 3v64_C          150 RKVLLWQS-----LEKP-RAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA--------D----THL---FWPNGL  208 (349)
T ss_dssp             CEEEECTT-----CSCE-EEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESC--------C----SSC---SCEEEE
T ss_pred             eEEEEeCC-----CCCc-ceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEE--------E----CCC---CCcceE
Confidence            12222110     1112 334455 57899998654  56889998875432210        0    000   112346


Q ss_pred             EEEcCCCeEEEEcC-CCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEE
Q 006913          191 VIDQCEGSIYISNT-QGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNIL  262 (626)
Q Consensus       191 viD~~dG~LwIGT~-~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~  262 (626)
                      ++|..++.||++.. .+.|.+++.++......... .......++++ ++.||++....+.+..+++.+|+..
T Consensus       209 a~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~-~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~  279 (349)
T 3v64_C          209 TIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ-GLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQ  279 (349)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-SCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred             EEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeC-CCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCcc
Confidence            77743889999865 56799999887543332221 12344566675 6899999877788999987777543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.67  E-value=0.068  Score=56.47  Aligned_cols=217  Identities=11%  Similarity=-0.047  Sum_probs=128.5

Q ss_pred             CCEEEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE-CCeEEEEECCCCccccceeEEEecCCCC
Q 006913           47 DGKIYACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSG  123 (626)
Q Consensus        47 dG~IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~  123 (626)
                      +..|..|+ ++.+..+|. +++..+.+....  ..+.++.. ....|..|+ ++.|..+|..++..     ...+..   
T Consensus       143 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~--~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~-----~~~~~~---  211 (435)
T 1p22_A          143 DQKIVSGLRDNTIKIWDKNTLECKRILTGHT--GSVLCLQY-DERVIITGSSDSTVRVWDVNTGEM-----LNTLIH---  211 (435)
T ss_dssp             SSEEEEEESSSCEEEEESSSCCEEEEECCCS--SCEEEEEC-CSSEEEEEETTSCEEEEESSSCCE-----EEEECC---
T ss_pred             CCEEEEEeCCCeEEEEeCCCCeEEEEEcCCC--CcEEEEEE-CCCEEEEEcCCCeEEEEECCCCcE-----EEEEcC---
Confidence            33455566 677999997 777766543221  12333333 233455566 78899999887631     222211   


Q ss_pred             CCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEE
Q 006913          124 KGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYIS  202 (626)
Q Consensus       124 ~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIG  202 (626)
                        ... .+..+. -.++.+..++.++.|..+|.. +...... .   .+  .   .+   ...+ .++..+  ++.|..|
T Consensus       212 --h~~-~v~~l~-~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-~---~~--~---~~---~~~v-~~~~~~--~~~l~s~  272 (435)
T 1p22_A          212 --HCE-AVLHLR-FNNGMMVTCSKDRSIAVWDMASPTDITLR-R---VL--V---GH---RAAV-NVVDFD--DKYIVSA  272 (435)
T ss_dssp             --CCS-CEEEEE-CCTTEEEEEETTSCEEEEECSSSSCCEEE-E---EE--C---CC---SSCE-EEEEEE--TTEEEEE
T ss_pred             --CCC-cEEEEE-EcCCEEEEeeCCCcEEEEeCCCCCCceee-e---Ee--c---CC---CCcE-EEEEeC--CCEEEEE
Confidence              112 233222 246688888888889999964 4432110 0   00  0   00   0111 233445  6788999


Q ss_pred             cCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeC
Q 006913          203 NTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSN  282 (626)
Q Consensus       203 T~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~d  282 (626)
                      +.++.|..+|.++++........ ...+.++..+ +..+..|+. ++.+..+|..+++........  ...+.++..+ +
T Consensus       273 ~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~-~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~~~-~  346 (435)
T 1p22_A          273 SGDRTIKVWNTSTCEFVRTLNGH-KRGIACLQYR-DRLVVSGSS-DNTIRLWDIECGACLRVLEGH--EELVRCIRFD-N  346 (435)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECC-SSCEEEEEEE-TTEEEEEET-TSCEEEEETTTCCEEEEECCC--SSCEEEEECC-S
T ss_pred             eCCCeEEEEECCcCcEEEEEcCC-CCcEEEEEeC-CCEEEEEeC-CCeEEEEECCCCCEEEEEeCC--cCcEEEEEec-C
Confidence            99999999999998776543321 2234555554 456777774 578888999999887655432  1234445554 6


Q ss_pred             CeEEEEEcCCeEEEEcC
Q 006913          283 GWISVGSLDGLLYSFSP  299 (626)
Q Consensus       283 G~IWVGT~~gGLy~~d~  299 (626)
                      ..|..|+.++.|..+|.
T Consensus       347 ~~l~sg~~dg~i~vwd~  363 (435)
T 1p22_A          347 KRIVSGAYDGKIKVWDL  363 (435)
T ss_dssp             SEEEEEETTSCEEEEEH
T ss_pred             CEEEEEeCCCcEEEEEC
Confidence            68888999999999984

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=97.67  E-value=0.06  Score=54.09  Aligned_cols=229  Identities=10%  Similarity=0.032  Sum_probs=122.6

Q ss_pred             eeeeeEEeeCCEE-EEEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEE-EE-CCeEEEEECCCCccccc
Q 006913           38 RLSKPLIGEDGKI-YACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYI-VA-ENRVLKVDLLKIGTSES  112 (626)
Q Consensus        38 ~~Sspvid~dG~I-wIgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwV-gT-~ggL~~id~~~~~~~~~  112 (626)
                      .........+|.+ ..|+ ++.+..+|. +++....+....  ..+.++....+++..+ ++ ++.|..+|..++..   
T Consensus        34 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---  108 (369)
T 3zwl_B           34 PLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHT--GTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQC---  108 (369)
T ss_dssp             CEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE---
T ss_pred             eEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcC--CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE---
Confidence            3444555556654 4455 667889987 777665443221  2344556666776554 44 67899999877632   


Q ss_pred             eeEEEecCCCCCCCCCCeeEEEEEEcCC-eEEEEEcC-----CeEEEEeCC-CcE---EEEECC-cccccccccccccCC
Q 006913          113 ATQVFYGTGSGKGGTGAIAGIAVSTSSS-SVYINVKG-----RALFAFMTH-GQL---LWSAGP-VLDQLGYRQGCTKTD  181 (626)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~I~s~~~d~dG-~LwIgT~~-----gGL~a~d~~-G~~---~w~~~~-~~~~~~~~~~~~~~l  181 (626)
                        ...+..       ...+..+....++ .+.++..+     +.|..++.. +..   ...... ....+.     ... 
T Consensus       109 --~~~~~~-------~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~~-  173 (369)
T 3zwl_B          109 --VATWKS-------PVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKII-----THE-  173 (369)
T ss_dssp             --EEEEEC-------SSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEE-----CCT-
T ss_pred             --EEEeec-------CCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeecc-----CCc-
Confidence              222211       1223344444444 45555555     677777742 211   111100 000000     000 


Q ss_pred             CCCccccceEEEcCCCeEEEEcCCCeEEEEeCCC-CeEEEEEcCCCCCcceeeeeecCCe-EEEEEcCCCEEEEEECCCC
Q 006913          182 VDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHS-PYFNWIQDLSSFDKAFTLTPGNNGY-LYVTIPVRALVLALDTSSG  259 (626)
Q Consensus       182 ~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~t-g~~~w~~~~~s~~~v~sI~~D~dG~-LwVGT~~gG~l~alD~~tG  259 (626)
                       .......+...+.+..|++++.+|.|..+|.++ +........ ....+.++....+|. |++++ .++.+..+|..++
T Consensus       174 -~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~  250 (369)
T 3zwl_B          174 -GLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDL-HEKSISDMQFSPDLTYFITSS-RDTNSFLVDVSTL  250 (369)
T ss_dssp             -TCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEEC-CSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTC
T ss_pred             -CccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEec-CCCceeEEEECCCCCEEEEec-CCceEEEEECCCC
Confidence             000112334443245677888889999999988 454443321 123456666666775 55555 4678889999999


Q ss_pred             cEEEEEecCCCCCceeeEEEeeCC-eEEEEEcCC
Q 006913          260 NILWHKSVGPLGSAEYAPVVDSNG-WISVGSLDG  292 (626)
Q Consensus       260 ~~~w~~~~~~l~~~~sspvvD~dG-~IWVGT~~g  292 (626)
                      +........   .....+...+++ .+++|+.++
T Consensus       251 ~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~  281 (369)
T 3zwl_B          251 QVLKKYETD---CPLNTAVITPLKEFIILGGGQE  281 (369)
T ss_dssp             CEEEEEECS---SCEEEEEECSSSSEEEEEECCC
T ss_pred             ceeeeecCC---CCceeEEecCCCceEEEeecCC
Confidence            887765533   123445555554 566666555

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.67  E-value=0.085  Score=55.69  Aligned_cols=230  Identities=9%  Similarity=-0.041  Sum_probs=139.7

Q ss_pred             eeeeeEEeeCCEEEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE-CCeEEEEECCCCcccccee
Q 006913           38 RLSKPLIGEDGKIYACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSESAT  114 (626)
Q Consensus        38 ~~Sspvid~dG~IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~  114 (626)
                      +.+.... .++.|..|+ ++.+..+|. +++....+....  ..+.++..+ ++.++.++ ++.|..+|..++..     
T Consensus       121 v~~~~~~-~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~-----  191 (445)
T 2ovr_B          121 VITCLQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT--GGVWSSQMR-DNIIISGSTDRTLKVWNAETGEC-----  191 (445)
T ss_dssp             CEEEEEE-ETTEEEEEETTSCEEEEETTTCCEEEECCCCS--SCEEEEEEE-TTEEEEEETTSCEEEEETTTTEE-----
T ss_pred             cEEEEEE-cCCEEEEEECCCcEEEEECCCCcEEEEEcCCC--CCEEEEEec-CCEEEEEeCCCeEEEEECCcCcE-----
Confidence            3343333 345566666 677899997 787765443211  223344443 34566666 78899999887631     


Q ss_pred             EEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEE
Q 006913          115 QVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVID  193 (626)
Q Consensus       115 ~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD  193 (626)
                      ...+.     .. ...+..+.. .++.+..++.++.|..+|.. ++.......            +   ...+ .++..+
T Consensus       192 ~~~~~-----~h-~~~v~~~~~-~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~------------~---~~~v-~~~~~~  248 (445)
T 2ovr_B          192 IHTLY-----GH-TSTVRCMHL-HEKRVVSGSRDATLRVWDIETGQCLHVLMG------------H---VAAV-RCVQYD  248 (445)
T ss_dssp             EEEEC-----CC-SSCEEEEEE-ETTEEEEEETTSEEEEEESSSCCEEEEEEC------------C---SSCE-EEEEEC
T ss_pred             EEEEC-----CC-CCcEEEEEe-cCCEEEEEeCCCEEEEEECCCCcEEEEEcC------------C---cccE-EEEEEC
Confidence            22221     11 123333333 46678888888889999975 776655310            0   0111 223344


Q ss_pred             cCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCc
Q 006913          194 QCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSA  273 (626)
Q Consensus       194 ~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~  273 (626)
                        ++.|..|+.++.|..+|.++++....... ....+.++..+ ...+.+|+. ++.+..+|..+++........  ...
T Consensus       249 --~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~-~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~--~~~  321 (445)
T 2ovr_B          249 --GRRVVSGAYDFMVKVWDPETETCLHTLQG-HTNRVYSLQFD-GIHVVSGSL-DTSIRVWDVETGNCIHTLTGH--QSL  321 (445)
T ss_dssp             --SSCEEEEETTSCEEEEEGGGTEEEEEECC-CSSCEEEEEEC-SSEEEEEET-TSCEEEEETTTCCEEEEECCC--CSC
T ss_pred             --CCEEEEEcCCCEEEEEECCCCcEeEEecC-CCCceEEEEEC-CCEEEEEeC-CCeEEEEECCCCCEEEEEcCC--ccc
Confidence              67788898899999999998877655432 12235555552 446777764 578888999899887655332  122


Q ss_pred             eeeEEEeeCCeEEEEEcCCeEEEEcCC-CCEEEEe
Q 006913          274 EYAPVVDSNGWISVGSLDGLLYSFSPS-GVLNKFS  307 (626)
Q Consensus       274 ~sspvvD~dG~IWVGT~~gGLy~~d~~-g~~~~~~  307 (626)
                      ...+..+ ++.+..|+.++.|..+|.. ++.....
T Consensus       322 v~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~  355 (445)
T 2ovr_B          322 TSGMELK-DNILVSGNADSTVKIWDIKTGQCLQTL  355 (445)
T ss_dssp             EEEEEEE-TTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             EEEEEEe-CCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            3444455 6788889999999999974 6655433

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.64  E-value=0.023  Score=56.76  Aligned_cols=178  Identities=12%  Similarity=0.021  Sum_probs=110.2

Q ss_pred             cCCeEEEEEcCC---eEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcC-CCeEEEEe
Q 006913          138 SSSSVYINVKGR---ALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT-QGELYSLS  212 (626)
Q Consensus       138 ~dG~LwIgT~~g---GL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~-~GgL~~ld  212 (626)
                      .++.||+++-..   .|..+|+. |+.+-..     .++          ...+.-.+..+  +++||+.++ ++-++.+|
T Consensus        29 ~~~~LyestG~~g~S~v~~vD~~tgkv~~~~-----~l~----------~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D   91 (243)
T 3mbr_X           29 LRGHLYESTGETGRSSVRKVDLETGRILQRA-----EVP----------PPYFGAGIVAW--RDRLIQLTWRNHEGFVYD   91 (243)
T ss_dssp             ETTEEEEEECCTTSCEEEEEETTTCCEEEEE-----ECC----------TTCCEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred             ECCEEEEECCCCCCceEEEEECCCCCEEEEE-----eCC----------CCcceeEEEEe--CCEEEEEEeeCCEEEEEE
Confidence            358999998653   69999985 8876543     111          01111223455  789999987 56789999


Q ss_pred             CCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCC---CceeeEEEeeCCeEEEEE
Q 006913          213 AHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLG---SAEYAPVVDSNGWISVGS  289 (626)
Q Consensus       213 ~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~---~~~sspvvD~dG~IWVGT  289 (626)
                      +++.+..-..+.+..  -..++.| .++||+.. +...++.+|+.+.++.-.......+   .....+... +|.||+..
T Consensus        92 ~~tl~~~~ti~~~~~--Gwglt~d-g~~L~vSd-gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanv  166 (243)
T 3mbr_X           92 LATLTPRARFRYPGE--GWALTSD-DSHLYMSD-GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANV  166 (243)
T ss_dssp             TTTTEEEEEEECSSC--CCEEEEC-SSCEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred             CCcCcEEEEEeCCCC--ceEEeeC-CCEEEEEC-CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEE
Confidence            999887765544331  1344444 56899976 5678999999999887655443101   112222233 89999998


Q ss_pred             c-CCeEEEEcCC-CCEEEEeecc---CCCCc--cccCceEEEEEEec-CCcEEEEEe
Q 006913          290 L-DGLLYSFSPS-GVLNKFSKSD---TSDSV--IQSSPYWFHLLGPS-IGLKAILCL  338 (626)
Q Consensus       290 ~-~gGLy~~d~~-g~~~~~~~~~---~~~~~--ilssp~V~~Il~Ds-dG~IwI~T~  338 (626)
                      . .+.|.++|+. |++.......   +....  .......+.|..|. .+++| -|+
T Consensus       167 w~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lf-VTG  222 (243)
T 3mbr_X          167 WLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLF-VTG  222 (243)
T ss_dssp             TTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEE-EEE
T ss_pred             CCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEE-EEC
Confidence            4 6799999985 8866544321   11000  01233556788776 46666 344

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.63  E-value=0.055  Score=57.23  Aligned_cols=221  Identities=9%  Similarity=-0.024  Sum_probs=126.0

Q ss_pred             cCCeEEEEECCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEc-CCeEEEEeCCCcEEEE-E
Q 006913           87 GTGEVYIVAENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVK-GRALFAFMTHGQLLWS-A  164 (626)
Q Consensus        87 ~dG~IwVgT~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~-~gGL~a~d~~G~~~w~-~  164 (626)
                      ..+.|+++..+.|..+++.+...     ......      .....+......++.||+... .+.|+.++++|...-. .
T Consensus        86 ~~~~l~~~~~~~I~~i~~~~~~~-----~~~~~~------~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~  154 (386)
T 3v65_B           86 PEPVLLFANRIDIRQVLPHRSEY-----TLLLNN------LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV  154 (386)
T ss_dssp             SCCEEEEECBSCEEEECTTSCCC-----EEEECS------CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE
T ss_pred             ccceeEeecCccceeeccCCCcE-----EEEecC------CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE
Confidence            34556666677899998876531     222111      112333333336788998764 4678899987543211 1


Q ss_pred             CCcccccccccccccCCCCCccccceEEEcCCCeEEEEcC-CCeEEEEeCCCCeEEEEEcCCCCCcceeeeee-cCCeEE
Q 006913          165 GPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT-QGELYSLSAHSPYFNWIQDLSSFDKAFTLTPG-NNGYLY  242 (626)
Q Consensus       165 ~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~-~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D-~dG~Lw  242 (626)
                      ..     +        +.   ....+++|..+++||+... .+.|.+++.++........ ........+++| .+|.||
T Consensus       155 ~~-----~--------~~---~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~-~~l~~P~giavdp~~g~ly  217 (386)
T 3v65_B          155 ST-----G--------LE---SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW-QSLEKPRAIALHPMEGTIY  217 (386)
T ss_dssp             CS-----S--------CS---CCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEEC-SSCSCEEEEEEETTTTEEE
T ss_pred             eC-----C--------CC---CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeec-CCCCCCcEEEEEcCCCeEE
Confidence            00     0        00   0133677743788988765 5678898888754333222 122345678888 478999


Q ss_pred             EEEcCC-CEEEEEECCCCcEEEEEecCCCCCceeeEEEe-eCCeEEEEEc-CCeEEEEcCCCCEEE-EeeccCCCCcccc
Q 006913          243 VTIPVR-ALVLALDTSSGNILWHKSVGPLGSAEYAPVVD-SNGWISVGSL-DGLLYSFSPSGVLNK-FSKSDTSDSVIQS  318 (626)
Q Consensus       243 VGT~~g-G~l~alD~~tG~~~w~~~~~~l~~~~sspvvD-~dG~IWVGT~-~gGLy~~d~~g~~~~-~~~~~~~~~~ils  318 (626)
                      +..... +.++.++.. |..........+ .....+++| .+++||+... .+.|++++.+|.... ...    ..  +.
T Consensus       218 ~td~~~~~~I~r~~~d-G~~~~~~~~~~~-~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~----~~--~~  289 (386)
T 3v65_B          218 WTDWGNTPRIEASSMD-GSGRRIIADTHL-FWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS----QG--LP  289 (386)
T ss_dssp             EEECSSSCEEEEEETT-SCSCEEEECSSC-SCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEEC----SS--CS
T ss_pred             EeccCCCCEEEEEeCC-CCCcEEEEECCC-CCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEE----CC--CC
Confidence            987655 688888854 433222211111 124567887 5789999864 457999998764322 222    11  22


Q ss_pred             CceEEEEEEecCCcEEEEEeeecCeeEEe
Q 006913          319 SPYWFHLLGPSIGLKAILCLMVVGQFSSL  347 (626)
Q Consensus       319 sp~V~~Il~DsdG~IwI~T~t~~Ggl~~~  347 (626)
                      .|  ..|..+ ++.|| |+....+.+...
T Consensus       290 ~P--~giav~-~~~ly-~td~~~~~V~~~  314 (386)
T 3v65_B          290 HP--FAITVF-EDSLY-WTDWHTKSINSA  314 (386)
T ss_dssp             SE--EEEEEE-TTEEE-EEETTTTEEEEE
T ss_pred             Cc--eEEEEE-CCEEE-EeeCCCCeEEEE
Confidence            33  345554 57888 776555666554

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=97.62  E-value=0.098  Score=55.11  Aligned_cols=261  Identities=9%  Similarity=-0.021  Sum_probs=139.7

Q ss_pred             eEEeeCCEEEE-Ee-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEE-E-CCeEEEEECCCCccccceeEE
Q 006913           42 PLIGEDGKIYA-CS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIV-A-ENRVLKVDLLKIGTSESATQV  116 (626)
Q Consensus        42 pvid~dG~IwI-gS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVg-T-~ggL~~id~~~~~~~~~~~~~  116 (626)
                      .....++.+.+ |+ ++.+..+|. +++....+...  ...+.++....+|.+.+. + ++.|..+|..+...     ..
T Consensus       114 ~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h--~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~-----~~  186 (410)
T 1vyh_C          114 VIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGH--TDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC-----IR  186 (410)
T ss_dssp             EEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCC--SSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCE-----EE
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEecc--CCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-----eE
Confidence            33435555444 44 667888887 66654333221  123445556677775554 4 67788888876421     11


Q ss_pred             EecCCCCCCCCCCeeEEEEEEcC-CeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEc
Q 006913          117 FYGTGSGKGGTGAIAGIAVSTSS-SSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQ  194 (626)
Q Consensus       117 ~~~~~~~~~~~~~~I~s~~~d~d-G~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~  194 (626)
                      .+     .... ..|..+....+ ..|..|+.++-+..+|.. |..+..+..            +.   ..+ ......+
T Consensus       187 ~~-----~~h~-~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~------------h~---~~v-~~~~~~~  244 (410)
T 1vyh_C          187 TM-----HGHD-HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG------------HR---EWV-RMVRPNQ  244 (410)
T ss_dssp             CC-----CCCS-SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC------------CS---SCE-EEEEECT
T ss_pred             EE-----cCCC-CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeC------------CC---ccE-EEEEECC
Confidence            11     1111 23444444444 457777888888889974 765543300            00   111 2233343


Q ss_pred             CCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeec--------------------CC-eEEEEEcCCCEEEE
Q 006913          195 CEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGN--------------------NG-YLYVTIPVRALVLA  253 (626)
Q Consensus       195 ~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~--------------------dG-~LwVGT~~gG~l~a  253 (626)
                      .+..|..|+.++.|..+|..++...-.... ....+.++....                    +| .|..|+ .++.+..
T Consensus       245 ~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs-~D~~i~i  322 (410)
T 1vyh_C          245 DGTLIASCSNDQTVRVWVVATKECKAELRE-HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS-RDKTIKM  322 (410)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE-TTSEEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCceeeEecC-CCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe-CCCeEEE
Confidence            133466677788899999888765433211 111223332222                    13 455555 4578888


Q ss_pred             EECCCCcEEEEEecCCCCCceeeEEEeeCC-eEEEEEcCCeEEEEcCC-CCEEEEeeccCCCCccccCceEEEEEEecCC
Q 006913          254 LDTSSGNILWHKSVGPLGSAEYAPVVDSNG-WISVGSLDGLLYSFSPS-GVLNKFSKSDTSDSVIQSSPYWFHLLGPSIG  331 (626)
Q Consensus       254 lD~~tG~~~w~~~~~~l~~~~sspvvD~dG-~IWVGT~~gGLy~~d~~-g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG  331 (626)
                      +|..+|.........  ...+.++...++| .|..|+.++.|..+|.. ++......        .....|.++....+|
T Consensus       323 wd~~~~~~~~~~~~h--~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~--------~h~~~v~~l~~~~~~  392 (410)
T 1vyh_C          323 WDVSTGMCLMTLVGH--DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN--------AHEHFVTSLDFHKTA  392 (410)
T ss_dssp             EETTTTEEEEEEECC--SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE--------CCSSCEEEEEECSSS
T ss_pred             EECCCCceEEEEECC--CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc--------CCCCcEEEEEEcCCC
Confidence            999888876554322  1234556666665 57778888889999864 43322221        112235566655666


Q ss_pred             cEEEEEeeecCee
Q 006913          332 LKAILCLMVVGQF  344 (626)
Q Consensus       332 ~IwI~T~t~~Ggl  344 (626)
                      ... .+++..|.+
T Consensus       393 ~~l-~sgs~D~~i  404 (410)
T 1vyh_C          393 PYV-VTGSVDQTV  404 (410)
T ss_dssp             SCE-EEEETTSEE
T ss_pred             CEE-EEEeCCCcE
Confidence            543 454444444

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.62  E-value=0.019  Score=61.85  Aligned_cols=232  Identities=9%  Similarity=-0.008  Sum_probs=128.2

Q ss_pred             eeeeEEe--eCCEEEEEeC-CcEEEEcCCCCEEEEEeCCCCCCcccCeEEecCCe-EEEEEC--C----eEEEEECCCCc
Q 006913           39 LSKPLIG--EDGKIYACSE-KTLFAFESNGTIAWSLDLDFTCNIGTAPVHGGTGE-VYIVAE--N----RVLKVDLLKIG  108 (626)
Q Consensus        39 ~Sspvid--~dG~IwIgSd-ggL~a~d~~G~~~W~~~~~~~~~i~~sp~iD~dG~-IwVgT~--g----gL~~id~~~~~  108 (626)
                      -+.+++|  .+|.||++.. +.|.++|.++..+-.+....  .....+.+|.+|+ ||++..  +    .++.+++.+..
T Consensus       139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~--~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~  216 (430)
T 3tc9_A          139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGL--SKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF  216 (430)
T ss_dssp             CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCC--SCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred             CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCC--CCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence            3556777  5689999875 68999998554322222111  2234567788888 898862  1    46667765431


Q ss_pred             cccceeEEEecCCCCCCCCCCeeEEEEEEc-CCeEEEEEcC-CeEEEEeCCCcEEEEECCcccccccccccccCCCCCcc
Q 006913          109 TSESATQVFYGTGSGKGGTGAIAGIAVSTS-SSSVYINVKG-RALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYF  186 (626)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~-dG~LwIgT~~-gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i  186 (626)
                      . ..  . .+...      ... ..+..+. +|.||++... +.|+.+++++.......    ..+       .   ...
T Consensus       217 ~-~~--~-~l~~~------~~p-~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~----~~~-------~---~~~  271 (430)
T 3tc9_A          217 K-VI--T-ELTKG------QNC-NGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLF----TIQ-------D---SGW  271 (430)
T ss_dssp             C-SE--E-EEEEC------SSC-CCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEE----ECS-------S---SSC
T ss_pred             e-ee--e-eeccC------CCc-eEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE----EcC-------C---CCc
Confidence            1 00  0 01000      001 1233455 8999998754 67999998744331110    000       0   001


Q ss_pred             ccceEEEcCCCe-EEEEcC-CCeEEEEeCCC--CeE----EEEEcCC--C----------CCcce-eeee--------ec
Q 006913          187 TSVPVIDQCEGS-IYISNT-QGELYSLSAHS--PYF----NWIQDLS--S----------FDKAF-TLTP--------GN  237 (626)
Q Consensus       187 ~sspviD~~dG~-LwIGT~-~GgL~~ld~~t--g~~----~w~~~~~--s----------~~~v~-sI~~--------D~  237 (626)
                      ...+++++ +|+ ||+... ++.|++++.++  +.+    .+.-..+  +          +.... .++.        |.
T Consensus       272 P~gia~~p-dG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~  350 (430)
T 3tc9_A          272 EFHIQFHP-SGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSD  350 (430)
T ss_dssp             CEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSC
T ss_pred             ceeEEEcC-CCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCC
Confidence            13367776 666 998864 56788877653  332    1111101  0          11122 3444        45


Q ss_pred             CCeEEEEEcCCCEEEEEECCCCcEEEEEecC-----C--CC--------CceeeEEEee-CCeEEEEEc-CCeEEEEcC
Q 006913          238 NGYLYVTIPVRALVLALDTSSGNILWHKSVG-----P--LG--------SAEYAPVVDS-NGWISVGSL-DGLLYSFSP  299 (626)
Q Consensus       238 dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~-----~--l~--------~~~sspvvD~-dG~IWVGT~-~gGLy~~d~  299 (626)
                      +|+|||+...+..+..++ .+|.+......+     .  .+        .....+++|+ +|.|||+.. +..|.++++
T Consensus       351 ~g~lyvaD~~n~~I~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  428 (430)
T 3tc9_A          351 EYDFYFCDRENHCIRILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY  428 (430)
T ss_dssp             CEEEEEEEGGGTEEEEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             CCeEEEEECCCcEEEEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence            689999987777898898 567665433220     0  00        1245677887 699999874 345655553

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=97.61  E-value=0.077  Score=53.81  Aligned_cols=235  Identities=10%  Similarity=0.042  Sum_probs=116.0

Q ss_pred             EEEEEe-----CCc--EEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEEC----CeEEEEECCCCccccceeEE
Q 006913           49 KIYACS-----EKT--LFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVAE----NRVLKVDLLKIGTSESATQV  116 (626)
Q Consensus        49 ~IwIgS-----dgg--L~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT~----ggL~~id~~~~~~~~~~~~~  116 (626)
                      .+|+|+     +++  ++.+|. +|++........ ......+.++.+|+||++..    +.|+.++..++...   ...
T Consensus         4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~-~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~---~~~   79 (347)
T 3hfq_A            4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAA-TQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAH---KLN   79 (347)
T ss_dssp             EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEE-CSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEE---EEE
T ss_pred             EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeec-cCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEE---Eee
Confidence            577775     123  556666 676542111111 01233566778899888762    67888887654210   000


Q ss_pred             EecCCCCCCCCCCeeEEEEEEcCC-eEEEEEc-CCeEEEEeC--CCcEEEEECCcccccccccccccCCCCCccccceEE
Q 006913          117 FYGTGSGKGGTGAIAGIAVSTSSS-SVYINVK-GRALFAFMT--HGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVI  192 (626)
Q Consensus       117 ~~~~~~~~~~~~~~I~s~~~d~dG-~LwIgT~-~gGL~a~d~--~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspvi  192 (626)
                      ....     . ......+....+| .||++.. ++.+..++.  +|...... .    +......+...........+.+
T Consensus        80 ~~~~-----~-~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~-~----~~~~~~~p~~~~~~~~~~~~~~  148 (347)
T 3hfq_A           80 TVVA-----P-GTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTD-T----VQHSGHGPRPEQDGSHIHYTDL  148 (347)
T ss_dssp             EEEE-----E-SCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEE-E----EECCCCCSSTTCSSCCEEEEEE
T ss_pred             eeec-----C-CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecc-e----eecCCCCCCccccCCCceEEEE
Confidence            1000     0 0111223345555 4888774 455777774  35543221 0    0000000000000001123556


Q ss_pred             EcCCCeEEEEcC-CCeEEEEeCC-CCeEEEEEc--CCCCCcceeeeeecCCe-EEEEEcCCCEEEE--EECCCCcEEEEE
Q 006913          193 DQCEGSIYISNT-QGELYSLSAH-SPYFNWIQD--LSSFDKAFTLTPGNNGY-LYVTIPVRALVLA--LDTSSGNILWHK  265 (626)
Q Consensus       193 D~~dG~LwIGT~-~GgL~~ld~~-tg~~~w~~~--~~s~~~v~sI~~D~dG~-LwVGT~~gG~l~a--lD~~tG~~~w~~  265 (626)
                      ++ +|++|+... ++.|..++.+ ++++.....  ......+..++.+.||+ ||++...++.+..  ++..+|+.....
T Consensus       149 sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~  227 (347)
T 3hfq_A          149 TP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLG  227 (347)
T ss_dssp             CT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred             CC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEee
Confidence            65 677888765 4568888877 555543221  11112344567778886 8887655555444  454456653221


Q ss_pred             --ecCCCC----CceeeEEEeeCCe-EEEEEc-CCeEEEEcC
Q 006913          266 --SVGPLG----SAEYAPVVDSNGW-ISVGSL-DGLLYSFSP  299 (626)
Q Consensus       266 --~~~~l~----~~~sspvvD~dG~-IWVGT~-~gGLy~~d~  299 (626)
                        ...+..    .....+.++++|. ||+... ++.|..++.
T Consensus       228 ~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~  269 (347)
T 3hfq_A          228 IVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAV  269 (347)
T ss_dssp             EEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEE
T ss_pred             eeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEE
Confidence              111100    1245577888885 778764 567777774

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=97.59  E-value=0.046  Score=56.27  Aligned_cols=239  Identities=7%  Similarity=-0.087  Sum_probs=128.7

Q ss_pred             eeeeEEeeCC--EEEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEec-CCeEE-EEE-CCeEEEEECCCCcccc
Q 006913           39 LSKPLIGEDG--KIYACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGG-TGEVY-IVA-ENRVLKVDLLKIGTSE  111 (626)
Q Consensus        39 ~Sspvid~dG--~IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~-dG~Iw-VgT-~ggL~~id~~~~~~~~  111 (626)
                      ........+|  .|..|+ ++.+..+|. ++..............+.++.... ++++. .++ ++.|..+|..+..   
T Consensus        76 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---  152 (383)
T 3ei3_B           76 VTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSV---  152 (383)
T ss_dssp             EEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCE---
T ss_pred             EEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCc---
Confidence            3344444565  455565 667888887 555443333211112344455555 44444 445 6888888987642   


Q ss_pred             ceeEEEecCCCCCCCCCCeeEEEEEE-cCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccce
Q 006913          112 SATQVFYGTGSGKGGTGAIAGIAVST-SSSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVP  190 (626)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~I~s~~~d-~dG~LwIgT~~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~ssp  190 (626)
                        ........   .. ...+..+... .+..|..++.++.|..+|.+++....+..            +   ... ..++
T Consensus       153 --~~~~~~~~---~~-~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~------------h---~~~-v~~~  210 (383)
T 3ei3_B          153 --IQVFAKTD---SW-DYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKL------------H---KAK-VTHA  210 (383)
T ss_dssp             --EEEEECCC---CS-SCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEEC------------S---SSC-EEEE
T ss_pred             --eEEEeccC---CC-CCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEecc------------C---CCc-EEEE
Confidence              11111111   11 1233443333 44567777888889999988776654310            0   011 2334


Q ss_pred             EEEcCCC--eEEEEcCCCeEEEEeCCC----CeEEEEEcCCCCCcceeeeeec-CCeEEEEEcCCCEEEEEECCCCcEEE
Q 006913          191 VIDQCEG--SIYISNTQGELYSLSAHS----PYFNWIQDLSSFDKAFTLTPGN-NGYLYVTIPVRALVLALDTSSGNILW  263 (626)
Q Consensus       191 viD~~dG--~LwIGT~~GgL~~ld~~t----g~~~w~~~~~s~~~v~sI~~D~-dG~LwVGT~~gG~l~alD~~tG~~~w  263 (626)
                      ...+ ++  .|..|..++.|..+|.++    +.......  ....+.++.... +|.+.+....++.+..+|..+++...
T Consensus       211 ~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~  287 (383)
T 3ei3_B          211 EFNP-RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP--HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPD  287 (383)
T ss_dssp             EECS-SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEE--CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCS
T ss_pred             EECC-CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEec--CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccc
Confidence            4544 44  577788888899999886    44433322  123456667666 77544433345788889987776432


Q ss_pred             EEecC---------CCC------CceeeEEEeeCCeEEEEEcCCeEEEEcCC-CCEEEE
Q 006913          264 HKSVG---------PLG------SAEYAPVVDSNGWISVGSLDGLLYSFSPS-GVLNKF  306 (626)
Q Consensus       264 ~~~~~---------~l~------~~~sspvvD~dG~IWVGT~~gGLy~~d~~-g~~~~~  306 (626)
                      .....         ...      .........++|.+ .|+.++.|..+|.. ++....
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~  345 (383)
T 3ei3_B          288 QIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQ  345 (383)
T ss_dssp             EEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEE
T ss_pred             ccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeee
Confidence            22100         000      00111333456666 66778889999964 665443

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.58  E-value=0.018  Score=60.27  Aligned_cols=229  Identities=14%  Similarity=0.099  Sum_probs=119.3

Q ss_pred             eeeeeEEeeCCEEEEEe-CCcEEEEcCCCCEEEEEeCC--C-CCCcccCeEEecC----CeEEEEE--C-----CeEEEE
Q 006913           38 RLSKPLIGEDGKIYACS-EKTLFAFESNGTIAWSLDLD--F-TCNIGTAPVHGGT----GEVYIVA--E-----NRVLKV  102 (626)
Q Consensus        38 ~~Sspvid~dG~IwIgS-dggL~a~d~~G~~~W~~~~~--~-~~~i~~sp~iD~d----G~IwVgT--~-----ggL~~i  102 (626)
                      .-..++++.+|+||++. .+.|++++ +|+..-.....  . .......+.++.+    +.||+..  .     +.|.++
T Consensus        32 ~P~~ia~~pdG~l~V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~  110 (352)
T 2ism_A           32 VPWALAFLPDGGMLIAERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRL  110 (352)
T ss_dssp             CEEEEEECTTSCEEEEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEE
T ss_pred             CceEEEEcCCCeEEEEeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEE
Confidence            34456777899999987 56789998 55432111111  0 0012234566665    7899985  2     689999


Q ss_pred             ECCCCccccceeEEE-ecCCCCCCCCCCeeEEEEEEcCCeEEEEEcC--------------CeEEEEeCCCcE-------
Q 006913          103 DLLKIGTSESATQVF-YGTGSGKGGTGAIAGIAVSTSSSSVYINVKG--------------RALFAFMTHGQL-------  160 (626)
Q Consensus       103 d~~~~~~~~~~~~~~-~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~--------------gGL~a~d~~G~~-------  160 (626)
                      +..+.........+. +.......+.   ...+..+.+|.||+++.+              +.|++++++|++       
T Consensus       111 ~~~~~~~~~~~~l~~~~p~~~~~~h~---~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~  187 (352)
T 2ism_A          111 RHLGERGVLDRVVLDGIPARPHGLHS---GGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL  187 (352)
T ss_dssp             EECSSCEEEEEEEEEEECCCTTCCCC---CCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred             EeCCCCcCceEEEEEeCCCCCCCCcC---CceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence            876532111111111 2210111111   123456789999998532              468888887632       


Q ss_pred             --------EEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCC-e--------EEEEeCCCCeEEEEEc
Q 006913          161 --------LWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQG-E--------LYSLSAHSPYFNWIQD  223 (626)
Q Consensus       161 --------~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~G-g--------L~~ld~~tg~~~w~~~  223 (626)
                              +|..       +.+          + ...+.+|+.+|.||++.... .        |..+.. ++.+-|-..
T Consensus       188 ~~~~~~~~i~a~-------G~r----------n-p~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~-G~nyGwp~~  248 (352)
T 2ism_A          188 GRRGARPEVYSL-------GHR----------N-PQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVP-GGNYGWPRV  248 (352)
T ss_dssp             TCTTSCTTEEEE-------CCS----------E-ECCCEECTTTCCEEEEEECC------CCCEEEEECT-TCBCCTTTC
T ss_pred             CCCCCCccEEEE-------cCC----------C-cccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEecc-CCcCCCCcc
Confidence                    1211       000          0 12345664368899987532 2        555533 322222100


Q ss_pred             C---------------CCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEE-----EEecCCCCCceeeEEEeeCC
Q 006913          224 L---------------SSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILW-----HKSVGPLGSAEYAPVVDSNG  283 (626)
Q Consensus       224 ~---------------~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w-----~~~~~~l~~~~sspvvD~dG  283 (626)
                      .               ........++. .+|.+|++...++.+..++...+...+     ..-..... ....+.++++|
T Consensus       249 ~g~~~~~~~~~p~~~~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~-rp~~v~~~pdG  326 (352)
T 2ism_A          249 VGRGNDPRYRDPLYFWPQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFG-RLREVQVGPDG  326 (352)
T ss_dssp             CSCCCCTTSCCCSEECTTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSC-CEEEEEECTTS
T ss_pred             cCCCCCCCCcCCeEecCCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCC-CeeEEEECCCC
Confidence            0               00001123333 478999998877788877654332111     10011111 24557788899


Q ss_pred             eEEEEEcC
Q 006913          284 WISVGSLD  291 (626)
Q Consensus       284 ~IWVGT~~  291 (626)
                      .|||.+.+
T Consensus       327 ~lyv~~~~  334 (352)
T 2ism_A          327 ALYVTTSN  334 (352)
T ss_dssp             CEEEEECS
T ss_pred             cEEEEEeC
Confidence            99999853

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.55  E-value=0.022  Score=58.85  Aligned_cols=186  Identities=17%  Similarity=0.061  Sum_probs=109.7

Q ss_pred             CCEEEEEe--CCcEEEEcCCCCE--EEEEeCCCCCCcccCeEEec-CCeEEEEE--CCeEEEEECCCCccccceeEEEec
Q 006913           47 DGKIYACS--EKTLFAFESNGTI--AWSLDLDFTCNIGTAPVHGG-TGEVYIVA--ENRVLKVDLLKIGTSESATQVFYG  119 (626)
Q Consensus        47 dG~IwIgS--dggL~a~d~~G~~--~W~~~~~~~~~i~~sp~iD~-dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~  119 (626)
                      ++.||+..  .+.|++++.+|..  .+......  .....+.+|. .|+||+..  .+.|.++++++..     ......
T Consensus        46 ~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l--~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-----~~~l~~  118 (318)
T 3sov_A           46 HGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGL--LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-----RKVLFW  118 (318)
T ss_dssp             GTEEEEEETTTTEEEEEETTSSSCCCEEEEECC--SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-----CEEEEC
T ss_pred             CCEEEEEECCCCcEEEEEccCCCceEEEEcCCC--CCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc-----EEEEEe
Confidence            57888875  4568888874431  11121111  1223567784 78899985  5789999987642     122221


Q ss_pred             CCCCCCCCCCeeEEEEEE-cCCeEEEEEc--CCeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccceEEEcCC
Q 006913          120 TGSGKGGTGAIAGIAVST-SSSSVYINVK--GRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCE  196 (626)
Q Consensus       120 ~~~~~~~~~~~I~s~~~d-~dG~LwIgT~--~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~d  196 (626)
                      ..     .... ..+..+ .+|.||+...  .+.|++++++|........            ..+   .....+++|..+
T Consensus       119 ~~-----~~~P-~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~------------~~l---~~Pnglavd~~~  177 (318)
T 3sov_A          119 QE-----LDQP-RAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN------------SEI---YWPNGLTLDYEE  177 (318)
T ss_dssp             SS-----CSSE-EEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEEC------------SSC---SCEEEEEEETTT
T ss_pred             CC-----CCCc-cEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEE------------CCC---CCccEEEEeccC
Confidence            10     1122 334445 5789999874  4679999988654322100            000   012346777447


Q ss_pred             CeEEEEcC-CCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEE
Q 006913          197 GSIYISNT-QGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNIL  262 (626)
Q Consensus       197 G~LwIGT~-~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~  262 (626)
                      ++||++.. .+.|+++|.++....-... ........++++ ++.+|+....++.+..+++.+|+..
T Consensus       178 ~~lY~aD~~~~~I~~~d~dG~~~~~~~~-~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~  242 (318)
T 3sov_A          178 QKLYWADAKLNFIHKSNLDGTNRQAVVK-GSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEGL  242 (318)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEEC-SCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred             CEEEEEECCCCEEEEEcCCCCceEEEec-CCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCce
Confidence            88998865 5679999988754432222 122345567777 4577777767789999998777643

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.55  E-value=0.065  Score=53.89  Aligned_cols=206  Identities=10%  Similarity=0.066  Sum_probs=118.7

Q ss_pred             ceeeeeEEee-CCEEEEEe--CCcEEEEcCCCCEEEEEeCCCCCCcccCeEEecCCeEEEEE--CCeEEEEECCCCcccc
Q 006913           37 FRLSKPLIGE-DGKIYACS--EKTLFAFESNGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA--ENRVLKVDLLKIGTSE  111 (626)
Q Consensus        37 ~~~Sspvid~-dG~IwIgS--dggL~a~d~~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT--~ggL~~id~~~~~~~~  111 (626)
                      .-.|..+.+. .++||+.+  ++.|+.+|.+|++....++... .-...+.++.+|.+||..  ++.++.++.......+
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~-~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~  105 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFV-KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVK  105 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSSC-SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEE
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCCC-CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeee
Confidence            3588888875 57899977  4579999999988776665421 123355667888888887  5688888654432111


Q ss_pred             ceeEEEecCCCCCCCCCCeeEEEEEE-cCCeEEEEEcC--CeEEEEeC--CCc-EEEEECCcccccccccccccCCCCCc
Q 006913          112 SATQVFYGTGSGKGGTGAIAGIAVST-SSSSVYINVKG--RALFAFMT--HGQ-LLWSAGPVLDQLGYRQGCTKTDVDCY  185 (626)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~I~s~~~d-~dG~LwIgT~~--gGL~a~d~--~G~-~~w~~~~~~~~~~~~~~~~~~l~~~~  185 (626)
                      ......+....  ...+.-...+..+ .+++||++...  .+|+.++.  .+. +.-...+   .+.      ....-..
T Consensus       106 ~~~~~~~~~~~--~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~---~~~------~~~~~~d  174 (255)
T 3qqz_A          106 ILKKIKIPLQE--SPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDK---ALQ------RQFTLDD  174 (255)
T ss_dssp             EEEEEECCCSS--CCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECH---HHH------HTCCSSC
T ss_pred             eeeeecccccc--ccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecch---hhc------cccccCC
Confidence            00111111100  1111123344445 45689998764  36777771  221 1101000   000      0000011


Q ss_pred             cccceEEEcCCCeEEEEcC-CCeEEEEeCCCCeEEEEEcCC-C-------CCcceeeeeecCCeEEEEEcCCCEEEEEEC
Q 006913          186 FTSVPVIDQCEGSIYISNT-QGELYSLSAHSPYFNWIQDLS-S-------FDKAFTLTPGNNGYLYVTIPVRALVLALDT  256 (626)
Q Consensus       186 i~sspviD~~dG~LwIGT~-~GgL~~ld~~tg~~~w~~~~~-s-------~~~v~sI~~D~dG~LwVGT~~gG~l~alD~  256 (626)
                       .+.+.+|+..|++||-+. ..-|..+|.++. +.-..... +       ....-.|+.|.+|+|||.... ..+|.+.+
T Consensus       175 -~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~-n~~y~f~~  251 (255)
T 3qqz_A          175 -VSGAEFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEP-NRFYRFTP  251 (255)
T ss_dssp             -CCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETT-TEEEEEEC
T ss_pred             -ceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCC-ceEEEEEe
Confidence             256778876888997655 567889998874 54444332 1       223457899999999999854 58888875


Q ss_pred             C
Q 006913          257 S  257 (626)
Q Consensus       257 ~  257 (626)
                      .
T Consensus       252 ~  252 (255)
T 3qqz_A          252 Q  252 (255)
T ss_dssp             -
T ss_pred             c
Confidence            3

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=97.54  E-value=0.038  Score=57.40  Aligned_cols=246  Identities=9%  Similarity=-0.056  Sum_probs=128.9

Q ss_pred             ceeeeeEEeeCCEEEE-Ee-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEE-EE-CCeEEEEECCCCcccc
Q 006913           37 FRLSKPLIGEDGKIYA-CS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYI-VA-ENRVLKVDLLKIGTSE  111 (626)
Q Consensus        37 ~~~Sspvid~dG~IwI-gS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwV-gT-~ggL~~id~~~~~~~~  111 (626)
                      .+.+......+|.+.+ |+ ++.+..+|. ++.....+. .. ...+.++....++.+.+ ++ ++.|..+|..++..  
T Consensus        98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~h-~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~--  173 (420)
T 3vl1_A           98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ-AH-VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN--  173 (420)
T ss_dssp             CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT-SS-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC--
T ss_pred             CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc-cc-cCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC--
Confidence            4444445555665444 55 567888887 555443221 11 12344566666776444 45 67899999876532  


Q ss_pred             ceeEEEecCCCCCCCCCCeeEEEEEEcC-CeEEEEEcCCeEEEEeCC-CcEEEEECCcccccc------ccccccc---C
Q 006913          112 SATQVFYGTGSGKGGTGAIAGIAVSTSS-SSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLG------YRQGCTK---T  180 (626)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~I~s~~~d~d-G~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~------~~~~~~~---~  180 (626)
                        .. .+.     .... .+..+....+ ..|..++.++.|..+|.. ++....+........      .......   .
T Consensus       174 --~~-~~~-----~h~~-~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  244 (420)
T 3vl1_A          174 --PR-TLI-----GHRA-TVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHE  244 (420)
T ss_dssp             --CE-EEE-----CCSS-CEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGG
T ss_pred             --ce-EEc-----CCCC-cEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeee
Confidence              11 111     1112 3444444444 457777777889999975 776655411000000      0000000   0


Q ss_pred             CCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCe--EEEEEcCCCEEEEEECCC
Q 006913          181 DVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGY--LYVTIPVRALVLALDTSS  258 (626)
Q Consensus       181 l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~--LwVGT~~gG~l~alD~~t  258 (626)
                      ..... ...+...+.+..|..|+.+|.|..+|.++++............+.++....+|.  |+.|+ ..+.+..+|..+
T Consensus       245 ~~~~~-v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~-~dg~i~vwd~~~  322 (420)
T 3vl1_A          245 ISTSK-KNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGY-ENGMLAQWDLRS  322 (420)
T ss_dssp             GCCCC-CCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEE-TTSEEEEEETTC
T ss_pred             cccCc-ccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEe-CCCeEEEEEcCC
Confidence            00000 011222321345777888888999999988766554322223456666666664  66666 457898899887


Q ss_pred             CcE-EEEEecCCCCCceeeEEEeeCC-eEEEEEcCCeEEEEcC
Q 006913          259 GNI-LWHKSVGPLGSAEYAPVVDSNG-WISVGSLDGLLYSFSP  299 (626)
Q Consensus       259 G~~-~w~~~~~~l~~~~sspvvD~dG-~IWVGT~~gGLy~~d~  299 (626)
                      +.. ........ ...+...... ++ .|..|+.++.|..++.
T Consensus       323 ~~~~~~~~~~~~-~~~v~~~~~~-~~~~l~s~~~d~~v~iw~~  363 (420)
T 3vl1_A          323 PECPVGEFLINE-GTPINNVYFA-AGALFVSSGFDTSIKLDII  363 (420)
T ss_dssp             TTSCSEEEEEST-TSCEEEEEEE-TTEEEEEETTTEEEEEEEE
T ss_pred             CcCchhhhhccC-CCCceEEEeC-CCCEEEEecCCccEEEEec
Confidence            753 22222211 1223434333 45 5556666777777774

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=97.53  E-value=0.037  Score=55.50  Aligned_cols=267  Identities=7%  Similarity=-0.090  Sum_probs=135.1

Q ss_pred             eeEEeeCCE-EEEEe-CCcEEEEcC-CCC----EEEEEeCCCCCCcccCeEEecCCe--EEEEE-CCeEEEEEC-CCCcc
Q 006913           41 KPLIGEDGK-IYACS-EKTLFAFES-NGT----IAWSLDLDFTCNIGTAPVHGGTGE--VYIVA-ENRVLKVDL-LKIGT  109 (626)
Q Consensus        41 spvid~dG~-IwIgS-dggL~a~d~-~G~----~~W~~~~~~~~~i~~sp~iD~dG~--IwVgT-~ggL~~id~-~~~~~  109 (626)
                      ......+|. |.+++ ++.+..++. ++.    ........   ..+.++....+++  |+.++ ++.|..++. .++. 
T Consensus        16 ~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-   91 (342)
T 1yfq_A           16 DIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYK---HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS-   91 (342)
T ss_dssp             EEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECS---SCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS-
T ss_pred             EEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecC---CceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCc-
Confidence            334434554 55555 566777776 554    33222221   2344555566676  55566 788999988 7653 


Q ss_pred             ccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCCC---cEEEEECCcccccccccccccCCCCCcc
Q 006913          110 SESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTHG---QLLWSAGPVLDQLGYRQGCTKTDVDCYF  186 (626)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~G---~~~w~~~~~~~~~~~~~~~~~~l~~~~i  186 (626)
                           ...+...   .... .+..+....++.|+.++.++.|..+|...   .........+..+.         .... 
T Consensus        92 -----~~~~~~~---~~~~-~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---------~~~~-  152 (342)
T 1yfq_A           92 -----FQALTNN---EANL-GICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK---------VKNK-  152 (342)
T ss_dssp             -----EEECBSC---CCCS-CEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS---------SCCC-
T ss_pred             -----eEecccc---CCCC-ceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe---------eCCc-
Confidence                 1111110   0122 33333333366777888888888887421   10000000000000         0111 


Q ss_pred             ccceEEEcCCCeEEEEcCCCeEEEEeCCC-CeEEEE-EcCCCCCcceeeeeec-CC-eEEEEEcCCCEEEEEECCCC---
Q 006913          187 TSVPVIDQCEGSIYISNTQGELYSLSAHS-PYFNWI-QDLSSFDKAFTLTPGN-NG-YLYVTIPVRALVLALDTSSG---  259 (626)
Q Consensus       187 ~sspviD~~dG~LwIGT~~GgL~~ld~~t-g~~~w~-~~~~s~~~v~sI~~D~-dG-~LwVGT~~gG~l~alD~~tG---  259 (626)
                      ..++...  .+.+++++.++.|..+|.++ +..... ........+.++.... +| .+.+++ ..+.+...+...+   
T Consensus       153 v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~  229 (342)
T 1yfq_A          153 IFTMDTN--SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS-IDGRVAVEFFDDQGDD  229 (342)
T ss_dssp             EEEEEEC--SSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE-TTSEEEEEECCTTCCS
T ss_pred             eEEEEec--CCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEe-cCCcEEEEEEcCCCcc
Confidence            1334444  34499999999999999987 442211 1111122355666665 55 455555 4567766555444   


Q ss_pred             ---cEEEEEecCCC-------CCceeeEEEeeCC-eEEEEEcCCeEEEEcCC-CCEEEEeeccCCCCccccCceEEEEEE
Q 006913          260 ---NILWHKSVGPL-------GSAEYAPVVDSNG-WISVGSLDGLLYSFSPS-GVLNKFSKSDTSDSVIQSSPYWFHLLG  327 (626)
Q Consensus       260 ---~~~w~~~~~~l-------~~~~sspvvD~dG-~IWVGT~~gGLy~~d~~-g~~~~~~~~~~~~~~ilssp~V~~Il~  327 (626)
                         ...........       ...+.++...+++ .|..|+.++.|+.+|.. ++......   .    .....|.++. 
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~----~h~~~v~~~~-  301 (342)
T 1yfq_A          230 YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA---K----FNEDSVVKIA-  301 (342)
T ss_dssp             TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC---C----CSSSEEEEEE-
T ss_pred             cccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhh---c----ccCCCceEec-
Confidence               33333322110       0134456666555 58888889999999975 55443322   1    1023355566 


Q ss_pred             ecCCcEEEEEeeecCe
Q 006913          328 PSIGLKAILCLMVVGQ  343 (626)
Q Consensus       328 DsdG~IwI~T~t~~Gg  343 (626)
                       .+|.+. .+++..|-
T Consensus       302 -~~~~~l-~s~s~Dg~  315 (342)
T 1yfq_A          302 -CSDNIL-CLATSDDT  315 (342)
T ss_dssp             -ECSSEE-EEEEECTH
T ss_pred             -CCCCeE-EEEecCCc
Confidence             667654 44444443

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.53  E-value=0.11  Score=55.27  Aligned_cols=228  Identities=11%  Similarity=0.022  Sum_probs=125.4

Q ss_pred             CCEEEEEeCCcEEEEcCCC-CEEEEEeCCCCCCcccCeEEec-CCeEEEEE--CCeEEEEECCCCccccceeEEEecCCC
Q 006913           47 DGKIYACSEKTLFAFESNG-TIAWSLDLDFTCNIGTAPVHGG-TGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGS  122 (626)
Q Consensus        47 dG~IwIgSdggL~a~d~~G-~~~W~~~~~~~~~i~~sp~iD~-dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~  122 (626)
                      ...|++.....|..++.++ ....... ..  ....++..|. ++.||+..  .+.|+++++++...... .......  
T Consensus        83 ~~~ll~~~~~~I~~i~l~~~~~~~~~~-~~--~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~-~~~~~~~--  156 (400)
T 3p5b_L           83 IAYLFFTNRHEVRKMTLDRSEYTSLIP-NL--RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS-YDTVISR--  156 (400)
T ss_dssp             SCEEEEEETTEEEEECTTSCSCEEEEC-SC--SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CC-CEEEECS--
T ss_pred             cceeEEeccceeEEEccCCcceeEecc-cc--CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCc-ceEEEeC--
Confidence            3456666667788888743 3322221 11  1223455563 68899886  57899998875210000 1111111  


Q ss_pred             CCCCCCCeeEEEEEE-cCCeEEEEEc-CCeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEE
Q 006913          123 GKGGTGAIAGIAVST-SSSSVYINVK-GRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIY  200 (626)
Q Consensus       123 ~~~~~~~~I~s~~~d-~dG~LwIgT~-~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~Lw  200 (626)
                         ..... ..+..+ .+++||+... .+.|..++++|...-...        .    ..+   .....+++|+.+|.||
T Consensus       157 ---~~~~p-~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~--------~----~~~---~~P~~iavdp~~g~ly  217 (400)
T 3p5b_L          157 ---DIQAP-DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF--------R----ENG---SKPRAIVVDPVHGFMY  217 (400)
T ss_dssp             ---SCSCE-EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEE--------E----CSS---CCEEEEEEETTTTEEE
T ss_pred             ---CCCCc-ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEE--------e----CCC---CCcceEEEecccCeEE
Confidence               01112 234445 4889998864 467888888865432210        0    000   0123467885478899


Q ss_pred             EEcC--CCeEEEEeCCCCeEEEEEcCCCCCcceeeeee-cCCeEEEEEcCCCEEEEEECCCCcEEEEE-ecC-CCCCcee
Q 006913          201 ISNT--QGELYSLSAHSPYFNWIQDLSSFDKAFTLTPG-NNGYLYVTIPVRALVLALDTSSGNILWHK-SVG-PLGSAEY  275 (626)
Q Consensus       201 IGT~--~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D-~dG~LwVGT~~gG~l~alD~~tG~~~w~~-~~~-~l~~~~s  275 (626)
                      +..+  .+.|++++.++......... .......++.| .+++||++......|..+|.. |...... ... .+. ...
T Consensus       218 ~td~~~~~~I~~~~~dG~~~~~~~~~-~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d-G~~~~~~~~~~~~l~-~P~  294 (400)
T 3p5b_L          218 WTDWGTPAKIKKGGLNGVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN-GGNRKTILEDEKRLA-HPF  294 (400)
T ss_dssp             EEECSSSCCEEEEETTSCSCEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCCCEEEEECSSTTS-SEE
T ss_pred             EEeCCCCCEEEEEeCCCCccEEEEEC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC-CCccEEEEeCCCCCC-CCE
Confidence            9875  36799999987544333221 22345678888 577999998666789999864 4333222 211 111 233


Q ss_pred             eEEEeeCCeEEEEE-cCCeEEEEcC-CCCE
Q 006913          276 APVVDSNGWISVGS-LDGLLYSFSP-SGVL  303 (626)
Q Consensus       276 spvvD~dG~IWVGT-~~gGLy~~d~-~g~~  303 (626)
                      .+.++ ++.||+.. .++.|+++++ +|+.
T Consensus       295 gl~v~-~~~lywtd~~~~~V~~~~~~~G~~  323 (400)
T 3p5b_L          295 SLAVF-EDKVFWTDIINEAIFSANRLTGSD  323 (400)
T ss_dssp             EEEEE-TTEEEEEESSSCSEEEEESSSCCC
T ss_pred             EEEEe-CCEEEEecCCCCeEEEEEcCCCCc
Confidence            46666 55666654 4567899984 5643

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.51  E-value=0.027  Score=58.95  Aligned_cols=234  Identities=13%  Similarity=0.074  Sum_probs=115.9

Q ss_pred             CeEEecCCeEEEEE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEc----CCeEEEEEcC------Ce
Q 006913           82 APVHGGTGEVYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTS----SSSVYINVKG------RA  150 (626)
Q Consensus        82 sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~----dG~LwIgT~~------gG  150 (626)
                      .+.++.+|+|||+. .+.|++++ .+ .     ..................+ +..+.    ++.||+....      +.
T Consensus        35 ~ia~~pdG~l~V~e~~g~I~~i~-~g-~-----~~~~~~~~v~~~g~~~p~g-ia~~pdf~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           35 ALAFLPDGGMLIAERPGRIRLFR-EG-R-----LSTYAELSVYHRGESGLLG-LALHPRFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             EEEECTTSCEEEEETTTEEEEEE-TT-E-----EEEEEECCCCCSTTCSEEE-EEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred             EEEEcCCCeEEEEeCCCeEEEEE-CC-C-----ccEeecceEeecCCCCcee-EEECCCCCCCCEEEEEEecCCCCCccE
Confidence            45667889999987 78899998 32 1     1111111000011122333 33444    4799997542      56


Q ss_pred             EEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcC--------------CCeEEEEeCCC
Q 006913          151 LFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT--------------QGELYSLSAHS  215 (626)
Q Consensus       151 L~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~--------------~GgL~~ld~~t  215 (626)
                      |.+++.+ +... .....+..++...+      ..+....+++++ +|.||++..              .|.|+++++++
T Consensus       107 v~r~~~~~~~~~-~~~~l~~~~p~~~~------~~h~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG  178 (352)
T 2ism_A          107 VVRLRHLGERGV-LDRVVLDGIPARPH------GLHSGGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRLTPEG  178 (352)
T ss_dssp             EEEEEECSSCEE-EEEEEEEEECCCTT------CCCCCCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS
T ss_pred             EEEEEeCCCCcC-ceEEEEEeCCCCCC------CCcCCceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEEcCCC
Confidence            8888865 3211 00000001110000      011123467886 899999863              26799999876


Q ss_pred             C--------------eEEEEEcCCCCCcceeeeeec-CCeEEEEEcCCCE--------EEEEECCCCcEEEEEe------
Q 006913          216 P--------------YFNWIQDLSSFDKAFTLTPGN-NGYLYVTIPVRAL--------VLALDTSSGNILWHKS------  266 (626)
Q Consensus       216 g--------------~~~w~~~~~s~~~v~sI~~D~-dG~LwVGT~~gG~--------l~alD~~tG~~~w~~~------  266 (626)
                      .              ...|...   ......++.|. +|+||++......        +..+. ..+..-|...      
T Consensus       179 ~~p~~npf~~~~~~~~~i~a~G---~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~-~G~nyGwp~~~g~~~~  254 (352)
T 2ism_A          179 EPAPGNPFLGRRGARPEVYSLG---HRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIV-PGGNYGWPRVVGRGND  254 (352)
T ss_dssp             SBCTTCTTTTCTTSCTTEEEEC---CSEECCCEECTTTCCEEEEEECC------CCCEEEEEC-TTCBCCTTTCCSCCCC
T ss_pred             CCCCCCcccCCCCCCccEEEEc---CCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEec-cCCcCCCCcccCCCCC
Confidence            1              1223221   12234567777 7899999753333        44443 2222212100      


Q ss_pred             ---cCCC-----CCceeeEEEeeCCeEEEEEcC-CeEEEEcCC--CCEEEEeeccCCCCccccCceEEEEEEecCCcEEE
Q 006913          267 ---VGPL-----GSAEYAPVVDSNGWISVGSLD-GLLYSFSPS--GVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAI  335 (626)
Q Consensus       267 ---~~~l-----~~~~sspvvD~dG~IWVGT~~-gGLy~~d~~--g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI  335 (626)
                         ..+.     ......+++ .+|.+|++... +.|++++.+  +........   ...+.....+..+..+.+|.||+
T Consensus       255 ~~~~~p~~~~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~---~~~~~~~~rp~~v~~~pdG~lyv  330 (352)
T 2ism_A          255 PRYRDPLYFWPQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRV---ETALSGFGRLREVQVGPDGALYV  330 (352)
T ss_dssp             TTSCCCSEECTTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEE---EEEEESSCCEEEEEECTTSCEEE
T ss_pred             CCCcCCeEecCCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecch---heecccCCCeeEEEECCCCcEEE
Confidence               0000     011233445 37899999864 468887754  321100000   00000112356788899999998


Q ss_pred             EEee
Q 006913          336 LCLM  339 (626)
Q Consensus       336 ~T~t  339 (626)
                      .+..
T Consensus       331 ~~~~  334 (352)
T 2ism_A          331 TTSN  334 (352)
T ss_dssp             EECS
T ss_pred             EEeC
Confidence            7643

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.50  E-value=0.015  Score=61.04  Aligned_cols=241  Identities=11%  Similarity=0.106  Sum_probs=123.7

Q ss_pred             eeeEEeeCCE-EEEEe-CCcEEEEcCCCCEEEEEe-CCC---CC-CcccCeEEec----CCeEEEEE-C--------CeE
Q 006913           40 SKPLIGEDGK-IYACS-EKTLFAFESNGTIAWSLD-LDF---TC-NIGTAPVHGG----TGEVYIVA-E--------NRV   99 (626)
Q Consensus        40 Sspvid~dG~-IwIgS-dggL~a~d~~G~~~W~~~-~~~---~~-~i~~sp~iD~----dG~IwVgT-~--------ggL   99 (626)
                      ..+..+.+|+ |||+. .+.|++++.+|...-.+. ...   .. .-...+.++.    ++.||+.. .        ..|
T Consensus        21 ~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v  100 (353)
T 2g8s_A           21 WALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAV  100 (353)
T ss_dssp             EEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEE
T ss_pred             EEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEE
Confidence            4567778999 99987 567888987665320010 110   00 0112455554    68999984 1        257


Q ss_pred             EEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcC--------------CeEEEEeCCCcE-----
Q 006913          100 LKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKG--------------RALFAFMTHGQL-----  160 (626)
Q Consensus       100 ~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~--------------gGL~a~d~~G~~-----  160 (626)
                      .+++..............+...+........-..+..+.+|.||+++.+              +.|++++++|.+     
T Consensus       101 ~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~np  180 (353)
T 2g8s_A          101 GYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNP  180 (353)
T ss_dssp             EEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCT
T ss_pred             EEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCC
Confidence            7776643211000111111111100000001123456779999998633              468899987652     


Q ss_pred             ----------EEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCC----eEEEEeCCCCeEEEEEcC--
Q 006913          161 ----------LWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQG----ELYSLSAHSPYFNWIQDL--  224 (626)
Q Consensus       161 ----------~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~G----gL~~ld~~tg~~~w~~~~--  224 (626)
                                +|.+       +.+          + ...+.+|..+|.||++....    .|..+.. ++.+-|-...  
T Consensus       181 f~~~~~~~~~i~a~-------G~r----------n-p~gl~~d~~~g~l~~~d~g~~~~dei~~i~~-G~nyGwp~~~~~  241 (353)
T 2g8s_A          181 FIKESGVRAEIWSY-------GIR----------N-PQGMAMNPWSNALWLNEHGPRGGDEINIPQK-GKNYGWPLATWG  241 (353)
T ss_dssp             TTTSTTSCTTEEEE-------CCS----------E-EEEEEEETTTTEEEEEEECSBSCEEEECCCT-TCBCCTTTBCSS
T ss_pred             CcCCCCCCccEEEE-------cCc----------C-ccceEEECCCCCEEEEecCCCCCcEEeEecc-CCcCCCCCccCC
Confidence                      2221       100          0 12345674368999986532    3544432 2232221000  


Q ss_pred             ----------------CC----------CCcceeeeee-------cCCeEEEEEcCCCEEEEEECCCCcEEEEEe-cCCC
Q 006913          225 ----------------SS----------FDKAFTLTPG-------NNGYLYVTIPVRALVLALDTSSGNILWHKS-VGPL  270 (626)
Q Consensus       225 ----------------~s----------~~~v~sI~~D-------~dG~LwVGT~~gG~l~alD~~tG~~~w~~~-~~~l  270 (626)
                                      ..          ......++..       .+|.+|++...++.+..++..++...-... ....
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~  321 (353)
T 2g8s_A          242 INYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDR  321 (353)
T ss_dssp             BCTTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGG
T ss_pred             CCCCCCccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCC
Confidence                            00          0011122222       368999999877888888766665432211 1111


Q ss_pred             CCceeeEEEeeCCeEEEEEc--CCeEEEEcC
Q 006913          271 GSAEYAPVVDSNGWISVGSL--DGLLYSFSP  299 (626)
Q Consensus       271 ~~~~sspvvD~dG~IWVGT~--~gGLy~~d~  299 (626)
                      ......+.++++|.|||.|.  ++.||++.+
T Consensus       322 ~~rp~~v~~~pdG~lyv~td~~~g~I~ri~~  352 (353)
T 2g8s_A          322 GQRIRDVRTGPDGYLYVLTDESSGELLKVSP  352 (353)
T ss_dssp             CCCEEEEEECTTSCEEEEECSTTEEEEEEEC
T ss_pred             CCceeEEEECCCCcEEEEEeCCCCEEEEEeC
Confidence            11245678899999999975  456777753

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.49  E-value=0.078  Score=56.45  Aligned_cols=196  Identities=10%  Similarity=0.050  Sum_probs=111.6

Q ss_pred             eeeEEe-eCCEEEEEe--CCcEEEEcCCCCE----EEEEeCCCCCCcccCeEEec-CCeEEEEE--CCeEEEEECCCCcc
Q 006913           40 SKPLIG-EDGKIYACS--EKTLFAFESNGTI----AWSLDLDFTCNIGTAPVHGG-TGEVYIVA--ENRVLKVDLLKIGT  109 (626)
Q Consensus        40 Sspvid-~dG~IwIgS--dggL~a~d~~G~~----~W~~~~~~~~~i~~sp~iD~-dG~IwVgT--~ggL~~id~~~~~~  109 (626)
                      ..+..| .++.||+..  .+.|++++.+|..    ........ ......+.+|. .++||+..  .+.|.++++++.. 
T Consensus       115 ~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~-~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~-  192 (400)
T 3p5b_L          115 VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-  192 (400)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSS-CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCS-
T ss_pred             eEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCC-CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCc-
Confidence            344554 367888875  4578888875521    11111111 01233567786 78899986  5789999887642 


Q ss_pred             ccceeEEEecCCCCCCCCCCeeEEEEEE-cCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccccccccccCCCCCcc
Q 006913          110 SESATQVFYGTGSGKGGTGAIAGIAVST-SSSSVYINVKG--RALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYF  186 (626)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~I~s~~~d-~dG~LwIgT~~--gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i  186 (626)
                          ........     .... ..+..+ .+|.||+...+  +.|..++++|...-....            ..+   ..
T Consensus       193 ----~~~l~~~~-----~~~P-~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~------------~~l---~~  247 (400)
T 3p5b_L          193 ----RKTLFREN-----GSKP-RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT------------ENI---QW  247 (400)
T ss_dssp             ----EEEEEECS-----SCCE-EEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC------------SSC---SC
T ss_pred             ----eEEEEeCC-----CCCc-ceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE------------CCC---Cc
Confidence                11221110     0112 334455 57899987643  578899988654322100            000   01


Q ss_pred             ccceEEEcCCCeEEEEcC-CCeEEEEeCCCCeEEEEEcC-CCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEE
Q 006913          187 TSVPVIDQCEGSIYISNT-QGELYSLSAHSPYFNWIQDL-SSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILW  263 (626)
Q Consensus       187 ~sspviD~~dG~LwIGT~-~GgL~~ld~~tg~~~w~~~~-~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w  263 (626)
                      ...+++|..+++||++.. .+.|.++|.++....-.... ........++++ ++.||+....++.+..+|+.+|+...
T Consensus       248 P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~  325 (400)
T 3p5b_L          248 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVN  325 (400)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCE
T ss_pred             eEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceE
Confidence            234677844788998864 56799999987554333222 123345566775 56788777666788888877776543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=97.45  E-value=0.14  Score=52.76  Aligned_cols=267  Identities=10%  Similarity=-0.054  Sum_probs=141.8

Q ss_pred             eEEeeCCEEEE-Ee-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE--CCeEEEEECCCCcc---ccce
Q 006913           42 PLIGEDGKIYA-CS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA--ENRVLKVDLLKIGT---SESA  113 (626)
Q Consensus        42 pvid~dG~IwI-gS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT--~ggL~~id~~~~~~---~~~~  113 (626)
                      .....+|...+ |+ ++.+..+|. ++..........  ..+.+.....+|...+..  ++.+..++......   ....
T Consensus        70 ~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~--~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~  147 (354)
T 2pbi_B           70 MDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPC--TWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKK  147 (354)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS--SCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGC
T ss_pred             EEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCC--CCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccc
Confidence            33335565444 55 566778886 666554443322  234455566777766544  67777776543210   0000


Q ss_pred             eEEEecCCCCCCCCCCeeEEEEE-EcCCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceE
Q 006913          114 TQVFYGTGSGKGGTGAIAGIAVS-TSSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPV  191 (626)
Q Consensus       114 ~~~~~~~~~~~~~~~~~I~s~~~-d~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspv  191 (626)
                      .....       ..+ .+..... ..+..|..++.++-+..+|.. ++.+..+..            +.   ..+ ....
T Consensus       148 ~~~~~-------h~~-~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~------------h~---~~v-~~~~  203 (354)
T 2pbi_B          148 KSVAM-------HTN-YLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHG------------HG---ADV-LCLD  203 (354)
T ss_dssp             EEEEE-------CSS-CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC------------CS---SCE-EEEE
T ss_pred             eeeec-------cCC-cEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcC------------CC---CCe-EEEE
Confidence            01110       112 2333333 334467778888888889974 766544300            00   011 1122


Q ss_pred             E--EcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCC
Q 006913          192 I--DQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGP  269 (626)
Q Consensus       192 i--D~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~  269 (626)
                      +  +..+..|+.|+.++.|..+|.++++....... ....+.++....+|.+.+....++.+..+|..++..........
T Consensus       204 ~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~-h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~  282 (354)
T 2pbi_B          204 LAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFET-HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKES  282 (354)
T ss_dssp             ECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT
T ss_pred             EEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCC
Confidence            2  21135678888899999999998876543321 12345666666666544433345678888887776554333221


Q ss_pred             CCCceeeEEEeeCC-eEEEEEcCCeEEEEcC-CCCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEEeeecCee
Q 006913          270 LGSAEYAPVVDSNG-WISVGSLDGLLYSFSP-SGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLMVVGQF  344 (626)
Q Consensus       270 l~~~~sspvvD~dG-~IWVGT~~gGLy~~d~-~g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~t~~Ggl  344 (626)
                      ......++...++| .|..|+.++.|..+|. +++......        -....|.++....+|... .+++..|.+
T Consensus       283 ~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~--------~h~~~v~~l~~spdg~~l-~sgs~D~~v  350 (354)
T 2pbi_B          283 IIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF--------GHENRVSTLRVSPDGTAF-CSGSWDHTL  350 (354)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC--------CCSSCEEEEEECTTSSCE-EEEETTSEE
T ss_pred             cccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEE--------CCCCcEEEEEECCCCCEE-EEEcCCCCE
Confidence            11123445555565 4666778889999996 465443222        122335666666677653 455444433

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=97.45  E-value=0.14  Score=52.52  Aligned_cols=249  Identities=10%  Similarity=-0.025  Sum_probs=125.8

Q ss_pred             CEEEEEe-CCcEEEEcC-CCC------EEEEEeCCCCCCcccCeEEecC----C---eEEE-EE-CCeEEEEECCCCccc
Q 006913           48 GKIYACS-EKTLFAFES-NGT------IAWSLDLDFTCNIGTAPVHGGT----G---EVYI-VA-ENRVLKVDLLKIGTS  110 (626)
Q Consensus        48 G~IwIgS-dggL~a~d~-~G~------~~W~~~~~~~~~i~~sp~iD~d----G---~IwV-gT-~ggL~~id~~~~~~~  110 (626)
                      ..|..|+ ++.+..++. ++.      ....+....  ..+.++....+    |   .+.+ ++ ++.|..++..++...
T Consensus        27 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~  104 (397)
T 1sq9_A           27 SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHK--SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDET  104 (397)
T ss_dssp             SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCT--TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTT
T ss_pred             CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCC--CcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccc
Confidence            5666666 567888887 555      233332211  12334444455    6   5444 45 678888887654210


Q ss_pred             cceeEEEecCCCCCCCCCCeeEEEEE----EcCCe-EEEEEcCCeEEEEeCC-------CcEEE-EECCccccccccccc
Q 006913          111 ESATQVFYGTGSGKGGTGAIAGIAVS----TSSSS-VYINVKGRALFAFMTH-------GQLLW-SAGPVLDQLGYRQGC  177 (626)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~I~s~~~----d~dG~-LwIgT~~gGL~a~d~~-------G~~~w-~~~~~~~~~~~~~~~  177 (626)
                      .......+...........+......    ..+.. |..++.++.|..+|..       ++.+. ...   ..+......
T Consensus       105 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~  181 (397)
T 1sq9_A          105 KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPT---LELQGTVES  181 (397)
T ss_dssp             CCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCE---EEEEEEECC
T ss_pred             ccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCc---ceeeeeecc
Confidence            00001111110000001223333333    33445 6677777778888742       22211 000   000000000


Q ss_pred             ccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcC---C--CCCcceeeeeecCCe-EEEEEcCC---
Q 006913          178 TKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDL---S--SFDKAFTLTPGNNGY-LYVTIPVR---  248 (626)
Q Consensus       178 ~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~---~--s~~~v~sI~~D~dG~-LwVGT~~g---  248 (626)
                      . ...... ..++...+ ++.|.+|+.++.|..+|.++++.......   .  ....+.++....++. |.+++ ..   
T Consensus       182 ~-~~~~~~-i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~-~d~~~  257 (397)
T 1sq9_A          182 P-MTPSQF-ATSVDISE-RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH-DSNSF  257 (397)
T ss_dssp             S-SSSCCC-CCEEEECT-TSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEE-EETTE
T ss_pred             c-cCCCCC-ceEEEECC-CceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEe-cCCCC
Confidence            0 000111 23345554 44777788889999999998877665442   1  023456666666665 44444 44   


Q ss_pred             CEEEEEECCCCcEEEEEecCC-----------CCCceeeEEEeeCC-eEEEEEcCCeEEEEcCC-CCEEE
Q 006913          249 ALVLALDTSSGNILWHKSVGP-----------LGSAEYAPVVDSNG-WISVGSLDGLLYSFSPS-GVLNK  305 (626)
Q Consensus       249 G~l~alD~~tG~~~w~~~~~~-----------l~~~~sspvvD~dG-~IWVGT~~gGLy~~d~~-g~~~~  305 (626)
                      +.+..+|..+++.........           ....+..+...+++ .|..|+.++.|..+|.. ++...
T Consensus       258 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  327 (397)
T 1sq9_A          258 GCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERIT  327 (397)
T ss_dssp             EEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             ceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeE
Confidence            688889988888776654310           01234556666555 57777888899999975 54443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.43  E-value=0.085  Score=58.12  Aligned_cols=230  Identities=9%  Similarity=0.095  Sum_probs=125.9

Q ss_pred             CeEEec--CCeEEEEE--CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEE-------EcCCe-EEEEEcCC
Q 006913           82 APVHGG--TGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVS-------TSSSS-VYINVKGR  149 (626)
Q Consensus        82 sp~iD~--dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~-------d~dG~-LwIgT~~g  149 (626)
                      .+.+|.  +++||++.  .++|.++|++++.     +.......  ...... ...+..       +.+|. ||++...+
T Consensus       143 ~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~-----v~~l~~~~--~~~~~~-p~~ia~~~~~~~~d~~G~~lyvad~~~  214 (496)
T 3kya_A          143 RLAFDPLNKDHLYICYDGHKAIQLIDLKNRM-----LSSPLNIN--TIPTNR-IRSIAFNKKIEGYADEAEYMIVAIDYD  214 (496)
T ss_dssp             EEEEETTEEEEEEEEEETEEEEEEEETTTTE-----EEEEECCT--TSSCSB-EEEEEECCCBTTTBCTTCEEEEEECCC
T ss_pred             EEEEccCCCCEEEEEECCCCeEEEEECCCCE-----EEEEEccC--ccccCC-CcEEEEeecccccCCCCCEEEEEeCCC
Confidence            345674  58899987  3689999988763     12222111  001111 233344       55555 99987654


Q ss_pred             -------eEEEEeCC--CcEEE----EECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcC-CCeEEEEeCC-
Q 006913          150 -------ALFAFMTH--GQLLW----SAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT-QGELYSLSAH-  214 (626)
Q Consensus       150 -------GL~a~d~~--G~~~w----~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~-~GgL~~ld~~-  214 (626)
                             .++.+++.  |...+    ..   +..+.          .+   ..+++++.++.||+... ++.|+++|++ 
T Consensus       215 ~~~~~~~~V~~i~r~~~G~~~~~~~~~~---v~~~~----------~p---~giavdp~~g~LYvtd~~~g~V~r~d~~~  278 (496)
T 3kya_A          215 GKGDESPSVYIIKRNADGTFDDRSDIQL---IAAYK----------QC---NGATIHPINGELYFNSYEKGQVFRLDLVD  278 (496)
T ss_dssp             TTGGGEEEEEEEECCTTSCCSTTSCEEE---EEEES----------CC---CCEEECTTTCCEEEEETTTTEEEEECHHH
T ss_pred             CCcccCceEEEEecCCCCceeeccccee---eccCC----------Cc---eEEEEcCCCCeEEEEECCCCEEEEEeccc
Confidence                   37778643  34321    10   00000          01   22456644788999886 4559999987 


Q ss_pred             ------CCeE------------EEEEcCCCCCcceeeeeecCCe-EEEEEcCCCEEEEE--ECCCCcE----EEEEecCC
Q 006913          215 ------SPYF------------NWIQDLSSFDKAFTLTPGNNGY-LYVTIPVRALVLAL--DTSSGNI----LWHKSVGP  269 (626)
Q Consensus       215 ------tg~~------------~w~~~~~s~~~v~sI~~D~dG~-LwVGT~~gG~l~al--D~~tG~~----~w~~~~~~  269 (626)
                            ++..            .-....+.......++.+.+|+ |||+......++.+  |..++.+    .+.-..+.
T Consensus       279 ~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~  358 (496)
T 3kya_A          279 YFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQ  358 (496)
T ss_dssp             HHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTB
T ss_pred             ccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCC
Confidence                  5543            0111112112345788898997 89998777788884  4444432    11111110


Q ss_pred             --C--C-------Ccee-eEEEe-------eCCeEEEEEc-CCeEEEEcCCCCEEEEeeccC------------CCC---
Q 006913          270 --L--G-------SAEY-APVVD-------SNGWISVGSL-DGLLYSFSPSGVLNKFSKSDT------------SDS---  314 (626)
Q Consensus       270 --l--~-------~~~s-spvvD-------~dG~IWVGT~-~gGLy~~d~~g~~~~~~~~~~------------~~~---  314 (626)
                        .  +       .... ..+++       .+|.|||+.. +..|.+++++|.+..+.-...            .++   
T Consensus       359 ~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~  438 (496)
T 3kya_A          359 SGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGIVSTYAGRGASTSLADGNQWGTDDGDLR  438 (496)
T ss_dssp             CCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTCBEEEEEESCTTHHHHHSCSCCCCCEETT
T ss_pred             CcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCCCEEEEecccccccccCccccccCCCCch
Confidence              0  0       0122 34455       5789999964 568999999897665532100            011   


Q ss_pred             --ccccCceEEEEEEecC-CcEEEEE
Q 006913          315 --VIQSSPYWFHLLGPSI-GLKAILC  337 (626)
Q Consensus       315 --~ilssp~V~~Il~Dsd-G~IwI~T  337 (626)
                        ..+..|  ..|..|.+ |+|||.-
T Consensus       439 ~~a~f~~P--~gIavd~~~g~lyVaD  462 (496)
T 3kya_A          439 EVARFRDV--SGLVYDDVKEMFYVHD  462 (496)
T ss_dssp             TTCCCSSE--EEEEEETTTTEEEEEE
T ss_pred             hhhhcCCC--cEEEEECCCCEEEEEe
Confidence              012223  46888885 9999753

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.43  E-value=0.035  Score=57.96  Aligned_cols=210  Identities=14%  Similarity=0.111  Sum_probs=112.9

Q ss_pred             CeEEec-CCeEEEEE--CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEE---EcCCeEEEEEc--------
Q 006913           82 APVHGG-TGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVS---TSSSSVYINVK--------  147 (626)
Q Consensus        82 sp~iD~-dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~---d~dG~LwIgT~--------  147 (626)
                      ++..|. +|.+|++.  .+.|..+++.++..    ....+...............+..   |.+|+||+...        
T Consensus        17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~----~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~   92 (334)
T 2p9w_A           17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSH----FNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA   92 (334)
T ss_dssp             CEEEETTTTEEEEEETTTTEEEEECTTTCCE----EEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred             CccCcCCCCEEEEEeccCCEEEEEcCCCCeE----EEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence            455543 78999998  79999999985421    11211110000111112234444   57799999644        


Q ss_pred             ------CCeEEEEeCC----CcEEEEECCcccccccccc-cccCCCCCccccceEEEcCCCeEEE-EcCC-CeEEEEeCC
Q 006913          148 ------GRALFAFMTH----GQLLWSAGPVLDQLGYRQG-CTKTDVDCYFTSVPVIDQCEGSIYI-SNTQ-GELYSLSAH  214 (626)
Q Consensus       148 ------~gGL~a~d~~----G~~~w~~~~~~~~~~~~~~-~~~~l~~~~i~sspviD~~dG~LwI-GT~~-GgL~~ld~~  214 (626)
                            ...|.+||..    |+.+|...-  ....  .+ .+.+.........+++|. +|++|| ++.. +.|++++++
T Consensus        93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL--~~~~--~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~pd  167 (334)
T 2p9w_A           93 DQSSHGASSFHSFNLPLSENSKPVWSVNF--EKVQ--DEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVSAD  167 (334)
T ss_dssp             SCCSSSCCEEEEEESSCCTTCCCSEEEES--HHHH--HHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEECTT
T ss_pred             ccccCCCCEEEEEcCCcCCCCCEEEEecC--cccc--ccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEeCC
Confidence                  4679999966    888887510  0000  00 000000000113467896 999999 6667 889999999


Q ss_pred             CCeEE-EEEcCCC---CCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEec---CC--CCCceee-EEEeeCCe
Q 006913          215 SPYFN-WIQDLSS---FDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSV---GP--LGSAEYA-PVVDSNGW  284 (626)
Q Consensus       215 tg~~~-w~~~~~s---~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~---~~--l~~~~ss-pvvD~dG~  284 (626)
                      +.... |....+.   ......|+...+|++.++....+.++++|..+.. .|....   +.  ....... +....+|+
T Consensus       168 G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv-~~~v~~~~~G~~~~~~~~dgilp~~~~G~  246 (334)
T 2p9w_A          168 GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPY-AWPEPVKINGDFGTLSGTEKIVTVPVGNE  246 (334)
T ss_dssp             SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSS-CCCEECEESSCCCCCTTEEEEEEEEETTE
T ss_pred             CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCc-ceeecccccCCcccccCcccccccccCCE
Confidence            86444 6543321   1113356777788655555457889999976432 211211   10  0011122 23345787


Q ss_pred             E-EEEEcCCeEEEEc-CCC
Q 006913          285 I-SVGSLDGLLYSFS-PSG  301 (626)
Q Consensus       285 I-WVGT~~gGLy~~d-~~g  301 (626)
                      + +|+....+++.+- .++
T Consensus       247 vllV~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          247 SVLVGARAPYAISFRSWDN  265 (334)
T ss_dssp             EEEEEEETTEEEEEECSST
T ss_pred             EEEEEcCCCCEEEEECCCC
Confidence            7 6665445555554 445

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=97.42  E-value=0.16  Score=52.79  Aligned_cols=231  Identities=6%  Similarity=-0.057  Sum_probs=126.0

Q ss_pred             eeeeEEeeCCE-EEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE-CCeEEEEECCCCcccccee
Q 006913           39 LSKPLIGEDGK-IYACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSESAT  114 (626)
Q Consensus        39 ~Sspvid~dG~-IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~  114 (626)
                      ........+|. |.+|+ ++.+..+|. +++....+....  ..+.++..+ ...+..++ ++.|..+|......    .
T Consensus       137 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~----~  209 (401)
T 4aez_A          137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQ--ARVGCLSWN-RHVLSSGSRSGAIHHHDVRIANH----Q  209 (401)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEEE-TTEEEEEETTSEEEEEETTSSSC----E
T ss_pred             EEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCC--CceEEEEEC-CCEEEEEcCCCCEEEEecccCcc----e
Confidence            33444444554 44455 567888887 666654443211  223344443 34555566 78888888874221    1


Q ss_pred             EEEecCCCCCCCCCCeeEEEEEEcC-CeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEE
Q 006913          115 QVFYGTGSGKGGTGAIAGIAVSTSS-SSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVI  192 (626)
Q Consensus       115 ~~~~~~~~~~~~~~~~I~s~~~d~d-G~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspvi  192 (626)
                      ...+.     .... .+..+....+ ..|..++.++.|..+|.. ++.......            .   ... ..++..
T Consensus       210 ~~~~~-----~~~~-~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~------------~---~~~-v~~~~~  267 (401)
T 4aez_A          210 IGTLQ-----GHSS-EVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTN------------H---NAA-VKAVAW  267 (401)
T ss_dssp             EEEEE-----CCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECC------------C---SSC-CCEEEE
T ss_pred             eeEEc-----CCCC-CeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecC------------C---cce-EEEEEE
Confidence            11111     1112 3343333334 456777878889999975 666654311            0   011 133444


Q ss_pred             EcCCCeEEE-E--cCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEc--CCCEEEEEECCCCcEEEEEec
Q 006913          193 DQCEGSIYI-S--NTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIP--VRALVLALDTSSGNILWHKSV  267 (626)
Q Consensus       193 D~~dG~LwI-G--T~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~--~gG~l~alD~~tG~~~w~~~~  267 (626)
                      .+.+..+++ |  +.++.|..+|.++++........  ..+.++....+|...+.+.  ..+.+..+|..++........
T Consensus       268 ~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~  345 (401)
T 4aez_A          268 CPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG--SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDI  345 (401)
T ss_dssp             CTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS--SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEE
T ss_pred             CCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC--CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEe
Confidence            431344555 3  36889999999988776654422  2355666666776555432  356777788777655443222


Q ss_pred             CCCCCceeeEEEeeCC-eEEEEEcCCeEEEEcCC
Q 006913          268 GPLGSAEYAPVVDSNG-WISVGSLDGLLYSFSPS  300 (626)
Q Consensus       268 ~~l~~~~sspvvD~dG-~IWVGT~~gGLy~~d~~  300 (626)
                      ......+..+...++| .|..|+.++.|..++..
T Consensus       346 ~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~  379 (401)
T 4aez_A          346 PAHDTRVLYSALSPDGRILSTAASDENLKFWRVY  379 (401)
T ss_dssp             ECCSSCCCEEEECTTSSEEEEECTTSEEEEEECC
T ss_pred             cCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence            1111224446666666 46667778888888864

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=97.42  E-value=0.14  Score=52.00  Aligned_cols=221  Identities=10%  Similarity=-0.002  Sum_probs=125.1

Q ss_pred             eCCEEEE-Ee-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEE-E-CCeEEEEECCCCccccceeEEEecC
Q 006913           46 EDGKIYA-CS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIV-A-ENRVLKVDLLKIGTSESATQVFYGT  120 (626)
Q Consensus        46 ~dG~IwI-gS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVg-T-~ggL~~id~~~~~~~~~~~~~~~~~  120 (626)
                      .++.+.+ ++ ++.+..+|. +++....+....  ....++....+|+..+. + ++.+..++..++..     ...+..
T Consensus        90 ~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~--~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~-----~~~~~~  162 (321)
T 3ow8_A           90 HTLPIAASSSLDAHIRLWDLENGKQIKSIDAGP--VDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK-----EYSLDT  162 (321)
T ss_dssp             SSSSEEEEEETTSEEEEEETTTTEEEEEEECCT--TCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE-----EEEEEC
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCC--ccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce-----eEEecC
Confidence            4444444 44 567788887 676654443322  12345566677775554 4 67888888877531     222211


Q ss_pred             CCCCCCCCCeeEEEEEEcCC-eEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCe
Q 006913          121 GSGKGGTGAIAGIAVSTSSS-SVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGS  198 (626)
Q Consensus       121 ~~~~~~~~~~I~s~~~d~dG-~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~  198 (626)
                            ....+..+....+| .|..|+.++-|..+|.. ++.+..+..            ..   .. ..++...+.+..
T Consensus       163 ------~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~------------h~---~~-v~~l~~spd~~~  220 (321)
T 3ow8_A          163 ------RGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG------------HA---MP-IRSLTFSPDSQL  220 (321)
T ss_dssp             ------SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC------------CS---SC-CCEEEECTTSCE
T ss_pred             ------CCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc------------cC---Cc-eeEEEEcCCCCE
Confidence                  11234444444454 46667777888899975 766544311            00   11 133455542345


Q ss_pred             EEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEE
Q 006913          199 IYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPV  278 (626)
Q Consensus       199 LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspv  278 (626)
                      |..|+.++.|..+|.+++....... +....+.++....+|...+....++.+...|..+++....+...  ...+.++.
T Consensus       221 l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h--~~~v~~v~  297 (321)
T 3ow8_A          221 LVTASDDGYIKIYDVQHANLAGTLS-GHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDH--QDQVWGVK  297 (321)
T ss_dssp             EEEECTTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEE
T ss_pred             EEEEcCCCeEEEEECCCcceeEEEc-CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCC--CCcEEEEE
Confidence            6677778889999998876543322 11234566666667754444334567888898888776544222  12344566


Q ss_pred             EeeCC-eEEEEEcCCeEEEEc
Q 006913          279 VDSNG-WISVGSLDGLLYSFS  298 (626)
Q Consensus       279 vD~dG-~IWVGT~~gGLy~~d  298 (626)
                      ..++| .|..++.++.|..+|
T Consensus       298 ~s~~g~~l~s~~~d~~i~vwd  318 (321)
T 3ow8_A          298 YNGNGSKIVSVGDDQEIHIYD  318 (321)
T ss_dssp             ECTTSSEEEEEETTCCEEEEE
T ss_pred             ECCCCCEEEEEeCCCeEEEEe
Confidence            66565 455566666666665

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=97.41  E-value=0.16  Score=56.30  Aligned_cols=236  Identities=10%  Similarity=0.000  Sum_probs=129.5

Q ss_pred             EeeCCEEEEEe--CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCe-EEEEE-CCeEEEEEC--CCCccccceeEE
Q 006913           44 IGEDGKIYACS--EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGE-VYIVA-ENRVLKVDL--LKIGTSESATQV  116 (626)
Q Consensus        44 id~dG~IwIgS--dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~-IwVgT-~ggL~~id~--~~~~~~~~~~~~  116 (626)
                      ++.+|.+|+..  ++.+..+|. +++.+..+..+.  . ...+.++.+|+ +|++. ++.|..+|.  .++.     ..-
T Consensus       145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~--~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~-----~~~  216 (543)
T 1nir_A          145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY--A-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT-----KVA  216 (543)
T ss_dssp             CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECST--T-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE-----EEE
T ss_pred             cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCc--c-cceEEECCCCCEEEEECCCCeEEEEECcCCCCc-----EEE
Confidence            45678888875  567999998 888776665432  1 34555677775 67776 788999998  5542     111


Q ss_pred             EecCCCCCCCCCCeeEEEEEEc-----CCeEEEEEc-CCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccc
Q 006913          117 FYGTGSGKGGTGAIAGIAVSTS-----SSSVYINVK-GRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSV  189 (626)
Q Consensus       117 ~~~~~~~~~~~~~~I~s~~~d~-----dG~LwIgT~-~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~ss  189 (626)
                      .+..       +.....+....     +..||++.+ ++.+..+|.. ++.+.....    .+... .........-...
T Consensus       217 ~i~~-------g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~----~g~~~-~~~~~~~~~~v~~  284 (543)
T 1nir_A          217 EIKI-------GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVST----RGMTV-DTQTYHPEPRVAA  284 (543)
T ss_dssp             EEEC-------CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEEC----CEECS-SSCCEESCCCEEE
T ss_pred             EEec-------CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecc----cCccc-CccccccCCceEE
Confidence            1111       11223333443     456888875 5788889974 777654311    00000 0000000000122


Q ss_pred             eEEEcCCCeEEEEc-CCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCe-EEEEEcCCCEEEEEECCCCcEEEEEec
Q 006913          190 PVIDQCEGSIYISN-TQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGY-LYVTIPVRALVLALDTSSGNILWHKSV  267 (626)
Q Consensus       190 pviD~~dG~LwIGT-~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~-LwVGT~~gG~l~alD~~tG~~~w~~~~  267 (626)
                      ++....++.+++.. ..+.|..+|..+++............+..+..+.+|+ +|++....+.+..+|..+|+.......
T Consensus       285 i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~  364 (543)
T 1nir_A          285 IIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV  364 (543)
T ss_dssp             EEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred             EEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeecc
Confidence            33332134455443 3567888888765432211111112244566777886 777765556888899999988766554


Q ss_pred             CCCCCc-eeeEEEeeC-CeEEEEEc--CCeEEEEcC
Q 006913          268 GPLGSA-EYAPVVDSN-GWISVGSL--DGLLYSFSP  299 (626)
Q Consensus       268 ~~l~~~-~sspvvD~d-G~IWVGT~--~gGLy~~d~  299 (626)
                      +..... ...-..+++ |.+|+...  ++.|..++.
T Consensus       365 g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~  400 (543)
T 1nir_A          365 GKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGT  400 (543)
T ss_dssp             SSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEEC
T ss_pred             CCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEe
Confidence            311000 011123444 88998763  467777875

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.38  E-value=0.099  Score=54.76  Aligned_cols=230  Identities=14%  Similarity=0.117  Sum_probs=119.4

Q ss_pred             CeEEecCCeEEEEE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEc----CCeEEEEEcC--------
Q 006913           82 APVHGGTGEVYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTS----SSSVYINVKG--------  148 (626)
Q Consensus        82 sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~----dG~LwIgT~~--------  148 (626)
                      .+.++.+|+|||+. .+.|++++.++.      ..+. .............+ +..+.    ++.||+....        
T Consensus        33 ~ia~~pdG~l~V~e~~g~I~~~d~~G~------~~~~-~~~v~~~g~~g~~g-ia~~pdf~~~g~lyv~~~~~~~~~~~~  104 (354)
T 3a9g_A           33 SIAPLGGGRYLVTERPGRLVLISPSGK------KLVA-SFDVANVGEAGLLG-LALHPEFPKKSWVYLYASYFAEGGHIR  104 (354)
T ss_dssp             EEEEEETTEEEEEETTTEEEEECSSCE------EEEE-ECCCCCSTTCSEEE-EEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred             EEEEcCCCeEEEEeCCCEEEEEeCCCc------eEee-ccceeecCCCceee-EEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence            56677899999998 789999975431      0111 00000011122333 33344    5899997542        


Q ss_pred             CeEEEEeCCCc---EEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcC--------------CCeEEEE
Q 006913          149 RALFAFMTHGQ---LLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT--------------QGELYSL  211 (626)
Q Consensus       149 gGL~a~d~~G~---~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~--------------~GgL~~l  211 (626)
                      +.|.+++.++.   .. ....++..++  .+      ..+....+++++ +|.||++..              .|.|+++
T Consensus       105 ~~v~r~~~~~~~~~~~-~~~~l~~~~~--~~------~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri  174 (354)
T 3a9g_A          105 NRVIRGRLDGSTFKLK-EVKTLIDGIP--GA------YIHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRV  174 (354)
T ss_dssp             EEEEEEEECSSSCCEE-EEEEEEEEEE--CC------SSCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEE
T ss_pred             eEEEEEEECCCCcCcC-ccEEEEEcCC--CC------CCcCCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEE
Confidence            56888886532   11 0000000011  00      011124467886 899999853              2679999


Q ss_pred             eCCCC---------eEEEEEcCCCCCcceeeeeec-CCeEEEEEcCC---CEEEEEECCCCcEEEEE-------------
Q 006913          212 SAHSP---------YFNWIQDLSSFDKAFTLTPGN-NGYLYVTIPVR---ALVLALDTSSGNILWHK-------------  265 (626)
Q Consensus       212 d~~tg---------~~~w~~~~~s~~~v~sI~~D~-dG~LwVGT~~g---G~l~alD~~tG~~~w~~-------------  265 (626)
                      ++++.         ...|...   ......++.|. +|+||++....   ..+..+. ..+..-|..             
T Consensus       175 ~~dG~~p~~npf~~~~i~a~G---~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~-~G~nyGwp~~~g~~~~~~~~~p  250 (354)
T 3a9g_A          175 DEEGRPPADNPFPNSPIWSYG---HRNPQGIDWHRASGVMVATEHGPVGHDEVNIIL-KGGNYGWPLATGKAGRGEFVDP  250 (354)
T ss_dssp             CTTSCCCTTSSSTTCCEEEEC---CSCCCEEEECTTTCCEEEEECCSSSCCEEEEEC-TTCBCCTTTCCSCCCCTTSCCC
T ss_pred             cCCCCCCCCCCCCCCcEEEEc---cCCcceEEEeCCCCCEEEEecCCCCCcEEEEec-CCCcCCCCcccCCCCCCCCcCC
Confidence            98763         1334322   22344677887 79999987432   2344443 222211110             


Q ss_pred             --ecCCCCCceeeEEE-------eeCCeEEEEEcC-CeEEEEcCC--CCEEEEeeccCCCCccccCceEEEEEEecCCcE
Q 006913          266 --SVGPLGSAEYAPVV-------DSNGWISVGSLD-GLLYSFSPS--GVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLK  333 (626)
Q Consensus       266 --~~~~l~~~~sspvv-------D~dG~IWVGT~~-gGLy~~d~~--g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~I  333 (626)
                        ..+........+.+       +.+|.+|++... +.|++++.+  ++........ .+    ....+..+..+.+|.|
T Consensus       251 ~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-~~----~~~rp~~v~~~pDG~l  325 (354)
T 3a9g_A          251 VIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF-KN----VFGRLRDVVIDDDGGI  325 (354)
T ss_dssp             SEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC-TT----TSCCEEEEEECTTSCE
T ss_pred             EeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec-cC----CCCCeeEEEECCCCcE
Confidence              00000011334444       357899999864 478888765  3332111100 11    0123567888999999


Q ss_pred             EEEEe
Q 006913          334 AILCL  338 (626)
Q Consensus       334 wI~T~  338 (626)
                      |+.+.
T Consensus       326 yv~~~  330 (354)
T 3a9g_A          326 LISTS  330 (354)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            98764

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=97.37  E-value=0.13  Score=51.57  Aligned_cols=233  Identities=9%  Similarity=0.008  Sum_probs=117.9

Q ss_pred             eeEEeeCC-EEEEEe-----CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecC---Ce-EEEEE-CCeEEEEECCCCc
Q 006913           41 KPLIGEDG-KIYACS-----EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGT---GE-VYIVA-ENRVLKVDLLKIG  108 (626)
Q Consensus        41 spvid~dG-~IwIgS-----dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~d---G~-IwVgT-~ggL~~id~~~~~  108 (626)
                      ......+| .+.++.     ++.+..+|. +++.......... ..+.++....+   |. ++.++ ++.|..++..++.
T Consensus        23 ~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  101 (357)
T 3i2n_A           23 DCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKA-KPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE  101 (357)
T ss_dssp             EEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEES-SCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS
T ss_pred             EEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeeccc-CcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC
Confidence            33343555 454443     456777776 5554322211111 12233333344   34 55566 7788888887653


Q ss_pred             cccceeEEEecCCCCCCCCCCeeEEEE-------EEcCCeEEEEEcCCeEEEEeCC-Cc-EEEEECCccccccccccccc
Q 006913          109 TSESATQVFYGTGSGKGGTGAIAGIAV-------STSSSSVYINVKGRALFAFMTH-GQ-LLWSAGPVLDQLGYRQGCTK  179 (626)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~I~s~~-------~d~dG~LwIgT~~gGL~a~d~~-G~-~~w~~~~~~~~~~~~~~~~~  179 (626)
                      .    ....+.     .... .+..+.       ...+..|..++.++.|..+|.. ++ ....+..       ..    
T Consensus       102 ~----~~~~~~-----~~~~-~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~-------~~----  160 (357)
T 3i2n_A          102 M----PVYSVK-----GHKE-IINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEP-------VQ----  160 (357)
T ss_dssp             S----CSEEEC-----CCSS-CEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECC-------CT----
T ss_pred             c----cEEEEE-----eccc-ceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccc-------cC----
Confidence            0    011111     1112 233321       1233457777777888888864 43 3332211       00    


Q ss_pred             CCCCCccccceE----EEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeec---CC-eEEEEEcCCCEE
Q 006913          180 TDVDCYFTSVPV----IDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGN---NG-YLYVTIPVRALV  251 (626)
Q Consensus       180 ~l~~~~i~sspv----iD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~---dG-~LwVGT~~gG~l  251 (626)
                      ......+ .++.    ..+.+..|..|+.++.|..+|.++++..+.....  ..+.++....   ++ .|++++ .++.+
T Consensus       161 ~~~~~~v-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~l~~~~-~dg~i  236 (357)
T 3i2n_A          161 GENKRDC-WTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIK--NGVCSLEFDRKDISMNKLVATS-LEGKF  236 (357)
T ss_dssp             TSCCCCE-EEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECS--SCEEEEEESCSSSSCCEEEEEE-STTEE
T ss_pred             CCCCCce-EEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCC--CceEEEEcCCCCCCCCEEEEEC-CCCeE
Confidence            0000011 1122    2222556777888899999999998876654322  2355555554   44 566666 45677


Q ss_pred             EEEECCCCcEEEEEe---cCCCCCceeeEEEeeCCe--EEEEEcCCeEEEEcC
Q 006913          252 LALDTSSGNILWHKS---VGPLGSAEYAPVVDSNGW--ISVGSLDGLLYSFSP  299 (626)
Q Consensus       252 ~alD~~tG~~~w~~~---~~~l~~~~sspvvD~dG~--IWVGT~~gGLy~~d~  299 (626)
                      ..+|..++.......   .......+..+...+++.  +..|+.++.|..++.
T Consensus       237 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~  289 (357)
T 3i2n_A          237 HVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKY  289 (357)
T ss_dssp             EEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEE
T ss_pred             EEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeec
Confidence            777755443221111   001112345566666665  777888888888874

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=97.35  E-value=0.093  Score=54.34  Aligned_cols=220  Identities=11%  Similarity=0.009  Sum_probs=122.5

Q ss_pred             EEEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEE-EEE-CCeEEEEECCCCccccceeEEEecCCCCC
Q 006913           49 KIYACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVY-IVA-ENRVLKVDLLKIGTSESATQVFYGTGSGK  124 (626)
Q Consensus        49 ~IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~Iw-VgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~  124 (626)
                      .|+.++ ++.+..+|. ++...  ..... ...........+|++. .++ ++.|..+|..++.     ....+.     
T Consensus        70 ~l~~~~~d~~v~i~d~~~~~~~--~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~-----  136 (420)
T 3vl1_A           70 HLYKARLDGHDFLFNTIIRDGS--KMLKR-ADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL-----QREIDQ-----  136 (420)
T ss_dssp             TEEEEEETTEEEEEECCSEETT--TTSCS-CCEEEEEEECSSSCEEEEEETTSCEEEECTTSCE-----EEEETT-----
T ss_pred             eEEEEEcCCcEEEEEeccccee--eEEec-CCceEEEEEecCCCEEEEEECCCCEEEEeCCCcc-----eeeecc-----
Confidence            355555 667777776 32211  00010 1122222344566544 445 6788888887652     111111     


Q ss_pred             CCCCCeeEEEEEEcCC-eEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEE
Q 006913          125 GGTGAIAGIAVSTSSS-SVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYIS  202 (626)
Q Consensus       125 ~~~~~~I~s~~~d~dG-~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIG  202 (626)
                      .. ...+..+....++ .|..++.++.|..+|.. ++....+..            +   ... ..++...+.+..|..+
T Consensus       137 ~h-~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~------------h---~~~-v~~~~~~~~~~~l~s~  199 (420)
T 3vl1_A          137 AH-VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIG------------H---RAT-VTDIAIIDRGRNVLSA  199 (420)
T ss_dssp             SS-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEEC------------C---SSC-EEEEEEETTTTEEEEE
T ss_pred             cc-cCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcC------------C---CCc-EEEEEEcCCCCEEEEE
Confidence            11 2234444444444 57777877889999974 654433200            0   011 2334555424557778


Q ss_pred             cCCCeEEEEeCCCCeEEEEEcCC--CCCc---------------------ceeeeeecCCe-EEEEEcCCCEEEEEECCC
Q 006913          203 NTQGELYSLSAHSPYFNWIQDLS--SFDK---------------------AFTLTPGNNGY-LYVTIPVRALVLALDTSS  258 (626)
Q Consensus       203 T~~GgL~~ld~~tg~~~w~~~~~--s~~~---------------------v~sI~~D~dG~-LwVGT~~gG~l~alD~~t  258 (626)
                      +.++.|..+|.++++........  ....                     +.++....+|. |.+|+ ..+.+..+|..+
T Consensus       200 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~  278 (420)
T 3vl1_A          200 SLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH-VSGVITVHNVFS  278 (420)
T ss_dssp             ETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE-TTSCEEEEETTT
T ss_pred             cCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc-CCCeEEEEECCC
Confidence            88888999999988876654321  0111                     11223345664 55555 457888899888


Q ss_pred             CcEEEEEecCCCCCceeeEEEeeCC--eEEEEEcCCeEEEEcCC
Q 006913          259 GNILWHKSVGPLGSAEYAPVVDSNG--WISVGSLDGLLYSFSPS  300 (626)
Q Consensus       259 G~~~w~~~~~~l~~~~sspvvD~dG--~IWVGT~~gGLy~~d~~  300 (626)
                      ++......... ...+.++...+++  .|+.|+.++.|..+|..
T Consensus       279 ~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~  321 (420)
T 3vl1_A          279 KEQTIQLPSKF-TCSCNSLTVDGNNANYIYAGYENGMLAQWDLR  321 (420)
T ss_dssp             CCEEEEECCTT-SSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred             CceeEEccccc-CCCceeEEEeCCCCCEEEEEeCCCeEEEEEcC
Confidence            88766553321 1235556776666  58889999999999974

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=97.34  E-value=0.17  Score=51.45  Aligned_cols=186  Identities=8%  Similarity=-0.056  Sum_probs=108.1

Q ss_pred             eEEecCCeEEEEE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCe-EEEEEcCCeEEEEeCC-Cc
Q 006913           83 PVHGGTGEVYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSS-VYINVKGRALFAFMTH-GQ  159 (626)
Q Consensus        83 p~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~-LwIgT~~gGL~a~d~~-G~  159 (626)
                      .....++.+..++ ++.|..+|..++..     ...+.     ...+ .+..+....++. +..|+.++.+..+|.. +.
T Consensus       149 ~~~~~~~~l~s~s~d~~i~~wd~~~~~~-----~~~~~-----~h~~-~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~  217 (340)
T 1got_B          149 CRFLDDNQIVTSSGDTTCALWDIETGQQ-----TTTFT-----GHTG-DVMSLSLAPDTRLFVSGACDASAKLWDVREGM  217 (340)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTTEE-----EEEEC-----CCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCS
T ss_pred             EEECCCCcEEEEECCCcEEEEECCCCcE-----EEEEc-----CCCC-ceEEEEECCCCCEEEEEeCCCcEEEEECCCCe
Confidence            3334567777776 78888889877531     11221     1112 344444444554 5566777888889974 66


Q ss_pred             EEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCC-CCcceeeeeecC
Q 006913          160 LLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSS-FDKAFTLTPGNN  238 (626)
Q Consensus       160 ~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s-~~~v~sI~~D~d  238 (626)
                      ....+..            +   ... ..++...+.+..|..|+.++.|..+|.++++......... ...+.++....+
T Consensus       218 ~~~~~~~------------h---~~~-v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~  281 (340)
T 1got_B          218 CRQTFTG------------H---ESD-INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS  281 (340)
T ss_dssp             EEEEECC------------C---SSC-EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTT
T ss_pred             eEEEEcC------------C---cCC-EEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCC
Confidence            6544310            0   011 1334444424557778888889999998877655433221 223566667778


Q ss_pred             CeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCe-EEEEEcCCeEEEE
Q 006913          239 GYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGW-ISVGSLDGLLYSF  297 (626)
Q Consensus       239 G~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~-IWVGT~~gGLy~~  297 (626)
                      |.+.+....++.+..+|..++.........  ...+.++...++|. |..|+.++.|..+
T Consensus       282 g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h--~~~v~~~~~s~dg~~l~s~s~D~~i~iW  339 (340)
T 1got_B          282 GRLLLAGYDDFNCNVWDALKADRAGVLAGH--DNRVSCLGVTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             CCEEEEECCCCeEEEEEcccCcEeeEeecC--CCcEEEEEEcCCCCEEEEEcCCccEEec
Confidence            865555445678888998888766443222  12344566665664 6667767666655

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=97.34  E-value=0.16  Score=50.91  Aligned_cols=236  Identities=7%  Similarity=-0.086  Sum_probs=122.4

Q ss_pred             eeeeEEeeCCEE-EEEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEE-E-C-----CeEEEEECCCCc
Q 006913           39 LSKPLIGEDGKI-YACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIV-A-E-----NRVLKVDLLKIG  108 (626)
Q Consensus        39 ~Sspvid~dG~I-wIgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVg-T-~-----ggL~~id~~~~~  108 (626)
                      ...+....+|.. ..++ ++.+..+|. +++....+...   ..+.++....++...+. . +     +.|..++.....
T Consensus        77 v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~  153 (369)
T 3zwl_B           77 IWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSP---VPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDS  153 (369)
T ss_dssp             EEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECS---SCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECT
T ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecC---CCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCc
Confidence            344455455654 4455 567888887 77776555432   23345556667765554 3 4     677777765432


Q ss_pred             cccceeEEEecCCCC---CCCC-CCeeEEEEEEcC-CeEEEEEcCCeEEEEeCC--CcEEEEECCcccccccccccccCC
Q 006913          109 TSESATQVFYGTGSG---KGGT-GAIAGIAVSTSS-SSVYINVKGRALFAFMTH--GQLLWSAGPVLDQLGYRQGCTKTD  181 (626)
Q Consensus       109 ~~~~~~~~~~~~~~~---~~~~-~~~I~s~~~d~d-G~LwIgT~~gGL~a~d~~--G~~~w~~~~~~~~~~~~~~~~~~l  181 (626)
                      ....  .........   .... ...+..+....+ ..|.+++.++.|..+|..  ++.......            .  
T Consensus       154 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------~--  217 (369)
T 3zwl_B          154 ATHE--LTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDL------------H--  217 (369)
T ss_dssp             TTCC--EEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEEC------------C--
T ss_pred             ccee--ecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEec------------C--
Confidence            1000  000000000   0000 113333333334 457777878889999974  444433200            0  


Q ss_pred             CCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCC-eEEEEEcCCC-----------
Q 006913          182 VDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNG-YLYVTIPVRA-----------  249 (626)
Q Consensus       182 ~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG-~LwVGT~~gG-----------  249 (626)
                       ... ...+...+.+..|+.++.++.|..+|.++++........  ..+..+....++ .++++...++           
T Consensus       218 -~~~-v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  293 (369)
T 3zwl_B          218 -EKS-ISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETD--CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEG  293 (369)
T ss_dssp             -SSC-EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS--SCEEEEEECSSSSEEEEEECCC------------
T ss_pred             -CCc-eeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCC--CCceeEEecCCCceEEEeecCCCceEEEEecCCC
Confidence             011 133444432455778888899999999998776654422  223444555555 4555543221           


Q ss_pred             --EEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCe-EEEEEcCCeEEEEcC
Q 006913          250 --LVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGW-ISVGSLDGLLYSFSP  299 (626)
Q Consensus       250 --~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~-IWVGT~~gGLy~~d~  299 (626)
                        .+..+|..+++........  ...+.++...++|. |..|+.++.|..++.
T Consensus       294 ~~~i~~~d~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~  344 (369)
T 3zwl_B          294 KFEARFYHKIFEEEIGRVQGH--FGPLNTVAISPQGTSYASGGEDGFIRLHHF  344 (369)
T ss_dssp             -CEEEEEETTTCCEEEEEECC--SSCEEEEEECTTSSEEEEEETTSEEEEEEE
T ss_pred             cceeEEEecCCCcchhheecc--cCcEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence              4666676666665443322  12244455655554 555566666666654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.34  E-value=0.098  Score=60.99  Aligned_cols=197  Identities=10%  Similarity=0.083  Sum_probs=113.6

Q ss_pred             eeeeEEee-CCEEEEEe--CCcEEEEcCCCCE---EEEEeCCCCCCcccCeEEecC-CeEEEEE--CCeEEEEECCCCcc
Q 006913           39 LSKPLIGE-DGKIYACS--EKTLFAFESNGTI---AWSLDLDFTCNIGTAPVHGGT-GEVYIVA--ENRVLKVDLLKIGT  109 (626)
Q Consensus        39 ~Sspvid~-dG~IwIgS--dggL~a~d~~G~~---~W~~~~~~~~~i~~sp~iD~d-G~IwVgT--~ggL~~id~~~~~~  109 (626)
                      ...+.++. ++.||+..  .+.|++++.+|..   ...............+.+|.. ++||++.  .+.|.+++.++.. 
T Consensus       426 ~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~-  504 (791)
T 3m0c_C          426 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-  504 (791)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS-
T ss_pred             eEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCe-
Confidence            34445554 67888876  4568888875421   011111111112345778854 5899986  5789999987642 


Q ss_pred             ccceeEEEecCCCCCCCCCCeeEEEEEE-cCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccccccccccCCCCCcc
Q 006913          110 SESATQVFYGTGSGKGGTGAIAGIAVST-SSSSVYINVKG--RALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYF  186 (626)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~I~s~~~d-~dG~LwIgT~~--gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i  186 (626)
                          ........     .... ..++.+ ..|.||+...+  +.|.+++++|..+-....            ..+   ..
T Consensus       505 ----~~~l~~~~-----l~~P-~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~------------~~l---~~  559 (791)
T 3m0c_C          505 ----RKTLFREN-----GSKP-RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT------------ENI---QW  559 (791)
T ss_dssp             ----EEEEEECT-----TCCE-EEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC------------SSC---SC
T ss_pred             ----EEEEEeCC-----CCCc-ceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe------------CCC---CC
Confidence                12222111     0112 334445 56899998754  468888888765432200            000   01


Q ss_pred             ccceEEEcCCCeEEEEcC-CCeEEEEeCCCCeEEEEEcCC-CCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEE
Q 006913          187 TSVPVIDQCEGSIYISNT-QGELYSLSAHSPYFNWIQDLS-SFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNIL  262 (626)
Q Consensus       187 ~sspviD~~dG~LwIGT~-~GgL~~ld~~tg~~~w~~~~~-s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~  262 (626)
                      ...+++|..++.||++.. .+.|.+++.++....-..... ......+++++ +++||++......|..+|+.+|+.+
T Consensus       560 P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~-~~~lYwtD~~~~~I~~~dk~tG~~~  636 (791)
T 3m0c_C          560 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV  636 (791)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred             ceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe-CCEEEEEECCCCEEEEEeCCCCcce
Confidence            234677844789998865 457999999876544333221 23344566665 5689998877788999998888654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.33  E-value=0.045  Score=60.33  Aligned_cols=246  Identities=13%  Similarity=0.137  Sum_probs=130.2

Q ss_pred             eeeeEEe--eCCEEEEEeC--CcEEEEcCCC-CEEEEEeCCCC-CCcccCeEE-------ecCCe-EEEEECC-------
Q 006913           39 LSKPLIG--EDGKIYACSE--KTLFAFESNG-TIAWSLDLDFT-CNIGTAPVH-------GGTGE-VYIVAEN-------   97 (626)
Q Consensus        39 ~Sspvid--~dG~IwIgSd--ggL~a~d~~G-~~~W~~~~~~~-~~i~~sp~i-------D~dG~-IwVgT~g-------   97 (626)
                      ...+.+|  .+++||++..  +.|.++|..+ .+.-....... ......+.+       |.+|. ||++..+       
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~  220 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES  220 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence            3456777  4689999974  4788999844 44321222110 112345667       88887 9988732       


Q ss_pred             -eEEEEECCC-Ccccc-ce-eEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCe-EEEEeCC-------CcEEEEEC
Q 006913           98 -RVLKVDLLK-IGTSE-SA-TQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRA-LFAFMTH-------GQLLWSAG  165 (626)
Q Consensus        98 -gL~~id~~~-~~~~~-~~-~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gG-L~a~d~~-------G~~~w~~~  165 (626)
                       .++.++... +.+.+ .. ..+.  .  ..    ...+..+...++.||++...++ |+++|++       +...|...
T Consensus       221 ~~V~~i~r~~~G~~~~~~~~~~v~--~--~~----~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~  292 (496)
T 3kya_A          221 PSVYIIKRNADGTFDDRSDIQLIA--A--YK----QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPI  292 (496)
T ss_dssp             EEEEEEECCTTSCCSTTSCEEEEE--E--ES----CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCB
T ss_pred             ceEEEEecCCCCceeecccceeec--c--CC----CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccc
Confidence             388887554 22211 00 0110  0  00    1122222233789999887655 9999975       33333210


Q ss_pred             Cc-----ccccccccccccCCCCCccccceEEEcCCCe-EEEEcC-CCeEEEEeCC--CCeE----EEEEcCC--C----
Q 006913          166 PV-----LDQLGYRQGCTKTDVDCYFTSVPVIDQCEGS-IYISNT-QGELYSLSAH--SPYF----NWIQDLS--S----  226 (626)
Q Consensus       166 ~~-----~~~~~~~~~~~~~l~~~~i~sspviD~~dG~-LwIGT~-~GgL~~ld~~--tg~~----~w~~~~~--s----  226 (626)
                      ..     ...+ +..      ........+++++ +|+ |||+.. ++.|++++.+  ++.+    .+.-..+  +    
T Consensus       293 ~~~~~g~~~~l-~~~------~~~~~p~~ia~~p-~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG  364 (496)
T 3kya_A          293 VKNNPNTFKQL-FTI------ADPSWEFQIFIHP-TGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDD  364 (496)
T ss_dssp             GGGCTTTEEEE-EEC------SSSSCCEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCC
T ss_pred             cccccccccee-Eec------CCCCCceEEEEcC-CCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCC
Confidence            00     0000 000      0011123467786 666 899865 5678886554  3332    2221111  0    


Q ss_pred             ------CCcce-eeeee-------cCCeEEEEEcCCCEEEEEECCCCcEEEEEec------------CC-CC--------
Q 006913          227 ------FDKAF-TLTPG-------NNGYLYVTIPVRALVLALDTSSGNILWHKSV------------GP-LG--------  271 (626)
Q Consensus       227 ------~~~v~-sI~~D-------~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~------------~~-l~--------  271 (626)
                            +.... .++.+       .+|.|||+...+..+..++ .+|.+......            +. .+        
T Consensus       365 ~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f  443 (496)
T 3kya_A          365 VGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARF  443 (496)
T ss_dssp             BGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCC
T ss_pred             cccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCEEEEecccccccccCccccccCCCCchhhhhc
Confidence                  12233 35565       5789999987778999998 57866543221            10 00        


Q ss_pred             CceeeEEEeeC-CeEEEEEc-CCeEEEEcCCC
Q 006913          272 SAEYAPVVDSN-GWISVGSL-DGLLYSFSPSG  301 (626)
Q Consensus       272 ~~~sspvvD~d-G~IWVGT~-~gGLy~~d~~g  301 (626)
                      .....+++|++ |+|||+.. +..|.+++.++
T Consensus       444 ~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~  475 (496)
T 3kya_A          444 RDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQ  475 (496)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred             CCCcEEEEECCCCEEEEEeCCCCEEEEEECCC
Confidence            11345678875 89999874 34666665543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.33  E-value=0.014  Score=59.15  Aligned_cols=111  Identities=19%  Similarity=0.117  Sum_probs=78.8

Q ss_pred             eEEEcCCCeEEEEcC-CCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecC
Q 006913          190 PVIDQCEGSIYISNT-QGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVG  268 (626)
Q Consensus       190 pviD~~dG~LwIGT~-~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~  268 (626)
                      +.++  ++.||+++. +|.|..+|+++|++.-.. .+.......+..+ +++||+.+...+.++.+|+.+++.+-++...
T Consensus        60 L~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~-g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~  135 (268)
T 3nok_A           60 LVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD-GERLYQLTWTEGLLFTWSGMPPQRERTTRYS  135 (268)
T ss_dssp             EEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC-SSCEEEEESSSCEEEEEETTTTEEEEEEECS
T ss_pred             EEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe-CCEEEEEEccCCEEEEEECCcCcEEEEEeCC
Confidence            4455  789999987 457999999999886654 3321111234554 5699999987889999999999988776654


Q ss_pred             CCCCceeeEEEeeCCeEEEEEcCCeEEEEcCC-CCEEEEee
Q 006913          269 PLGSAEYAPVVDSNGWISVGSLDGLLYSFSPS-GVLNKFSK  308 (626)
Q Consensus       269 ~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~-g~~~~~~~  308 (626)
                      +-+   ..++.| .+++|+....+.|+.+|+. .+......
T Consensus       136 ~eG---wGLt~D-g~~L~vSdGs~~l~~iDp~T~~v~~~I~  172 (268)
T 3nok_A          136 GEG---WGLCYW-NGKLVRSDGGTMLTFHEPDGFALVGAVQ  172 (268)
T ss_dssp             SCC---CCEEEE-TTEEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred             Cce---eEEecC-CCEEEEECCCCEEEEEcCCCCeEEEEEE
Confidence            311   234455 6789999878899999986 56554433

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=97.31  E-value=0.21  Score=51.59  Aligned_cols=196  Identities=13%  Similarity=0.018  Sum_probs=108.1

Q ss_pred             CeEEecCCeEEEEE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCC-eEEEEEcCCeEEEEeCC-C
Q 006913           82 APVHGGTGEVYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSS-SVYINVKGRALFAFMTH-G  158 (626)
Q Consensus        82 sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG-~LwIgT~~gGL~a~d~~-G  158 (626)
                      ++....++.+..++ ++.|...|..++..... ......     .+ ...|..+....+| .|..|+.++-|..+|.. +
T Consensus        87 ~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~-~~~~~~-----~H-~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~  159 (344)
T 4gqb_B           87 DLTWVGERGILVASDSGAVELWELDENETLIV-SKFCKY-----EH-DDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ  159 (344)
T ss_dssp             EEEEETTTEEEEEETTSEEEEEEECTTSSCEE-EEEEEE-----CC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             EEEEeCCCeEEEEECCCEEEEEeccCCCceeE-eecccc-----CC-CCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence            44455778888777 67788888776532100 011100     11 1234444444455 46667777788899975 7


Q ss_pred             cEEEEECCcccccccccccccCCCCCccccceEEEcCCCe-EEEEcCCCeEEEEeCCCCeEEEEEcCCC-CCcceeeeee
Q 006913          159 QLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGS-IYISNTQGELYSLSAHSPYFNWIQDLSS-FDKAFTLTPG  236 (626)
Q Consensus       159 ~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~-LwIGT~~GgL~~ld~~tg~~~w~~~~~s-~~~v~sI~~D  236 (626)
                      +.+..+..            +.   ..+ .+......+.. +..|..++.|..+|.++++......... ...+.++...
T Consensus       160 ~~~~~~~~------------h~---~~V-~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  223 (344)
T 4gqb_B          160 VVLSSYRA------------HA---AQV-TCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWH  223 (344)
T ss_dssp             EEEEEECC------------CS---SCE-EEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEEC
T ss_pred             cEEEEEcC------------cC---Cce-EEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeec
Confidence            66554310            00   111 23333321333 4556678889999998877654322111 1223444443


Q ss_pred             c-CCeEEE-EEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCC--eEEEEEcCCeEEEEcCC-CCE
Q 006913          237 N-NGYLYV-TIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNG--WISVGSLDGLLYSFSPS-GVL  303 (626)
Q Consensus       237 ~-dG~LwV-GT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG--~IWVGT~~gGLy~~d~~-g~~  303 (626)
                      . ++++.+ |+ .++.+..+|..+++.+......  ...+.++...++|  .|..|+.++.|..+|.. ++.
T Consensus       224 p~~~~~l~sg~-~dg~v~~wd~~~~~~~~~~~~h--~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~  292 (344)
T 4gqb_B          224 PQQSEVFVFGD-ENGTVSLVDTKSTSCVLSSAVH--SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL  292 (344)
T ss_dssp             SSCTTEEEEEE-TTSEEEEEESCC--CCEEEECC--SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE
T ss_pred             CCCCcceEEec-cCCcEEEEECCCCcEEEEEcCC--CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE
Confidence            3 445554 55 4578888998888776554322  1234556666665  36668888999999976 443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.25  E-value=0.026  Score=57.20  Aligned_cols=112  Identities=14%  Similarity=0.108  Sum_probs=79.3

Q ss_pred             eEEEcCCCeEEEEcC---CCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEe
Q 006913          190 PVIDQCEGSIYISNT---QGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKS  266 (626)
Q Consensus       190 pviD~~dG~LwIGT~---~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~  266 (626)
                      +.++. ++.||+++.   .+.|..+|..++++.-..+.+.......++.+ +++||+++...+.+..+|+.+++.+....
T Consensus        26 l~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t~~v~~~i~  103 (266)
T 2iwa_A           26 LVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL-NEKLYQVVWLKNIGFIYDRRTLSNIKNFT  103 (266)
T ss_dssp             EEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEETTCSEEEEEETTTTEEEEEEE
T ss_pred             EEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe-CCEEEEEEecCCEEEEEECCCCcEEEEEE
Confidence            45564 589999874   46899999999998776554432222334555 56999999878899999999998887766


Q ss_pred             cC-CCCCceeeEEEeeCCeEEEEEcCCeEEEEcCC-CCEEEEe
Q 006913          267 VG-PLGSAEYAPVVDSNGWISVGSLDGLLYSFSPS-GVLNKFS  307 (626)
Q Consensus       267 ~~-~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~-g~~~~~~  307 (626)
                      .+ +-+   ..+..| .+++|++..++.|+.+|+. .+.....
T Consensus       104 ~g~~~g---~glt~D-g~~l~vs~gs~~l~viD~~t~~v~~~I  142 (266)
T 2iwa_A          104 HQMKDG---WGLATD-GKILYGSDGTSILYEIDPHTFKLIKKH  142 (266)
T ss_dssp             CCSSSC---CEEEEC-SSSEEEECSSSEEEEECTTTCCEEEEE
T ss_pred             CCCCCe---EEEEEC-CCEEEEECCCCeEEEEECCCCcEEEEE
Confidence            55 311   223344 5789998877899999986 4554443

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=97.21  E-value=0.083  Score=54.63  Aligned_cols=199  Identities=9%  Similarity=-0.045  Sum_probs=104.3

Q ss_pred             cCeEEecCCeEEEEE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCC-eEEEEEcCCeEEEEeCC-
Q 006913           81 TAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSS-SVYINVKGRALFAFMTH-  157 (626)
Q Consensus        81 ~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG-~LwIgT~~gGL~a~d~~-  157 (626)
                      .++....++.+.+++ ++.|...|..++..... .....     ... ...|..+....+| .|..++.++-|..+|.. 
T Consensus        98 ~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~-~~~~~-----~~h-~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~  170 (357)
T 4g56_B           98 TDVAWVSEKGILVASDSGAVELWEILEKESLLV-NKFAK-----YEH-DDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ  170 (357)
T ss_dssp             EEEEEETTTEEEEEETTSCEEEC--------CC-CCEEE-----CCC-SSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred             EEEEEcCCCCEEEEECCCEEEEeeccccceeEE-Eeecc-----CCC-CCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            345556788888877 67777777655421000 00000     011 2234444444455 46667777888899975 


Q ss_pred             CcEEEEECCcccccccccccccCCCCCccccceEEEcC-CCeEEEEcCCCeEEEEeCCCCeEEEEEcCC-CCCcceeeee
Q 006913          158 GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQC-EGSIYISNTQGELYSLSAHSPYFNWIQDLS-SFDKAFTLTP  235 (626)
Q Consensus       158 G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~-dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~-s~~~v~sI~~  235 (626)
                      ++.+..+..            +   ...+ .++..... +..+..+..++.|..+|.++++........ ....+.++..
T Consensus       171 ~~~~~~~~~------------h---~~~v-~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~  234 (357)
T 4g56_B          171 KAVLKSYNA------------H---SSEV-NCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTW  234 (357)
T ss_dssp             TEEEEEECC------------C---SSCE-EEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEE
T ss_pred             CcEEEEEcC------------C---CCCE-EEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhh
Confidence            766554310            0   0111 22333221 234566667888888898877543322211 1122444544


Q ss_pred             ecC-Ce-EEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCC--eEEEEEcCCeEEEEcCC-CCEEE
Q 006913          236 GNN-GY-LYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNG--WISVGSLDGLLYSFSPS-GVLNK  305 (626)
Q Consensus       236 D~d-G~-LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG--~IWVGT~~gGLy~~d~~-g~~~~  305 (626)
                      ..+ +. |..|+ ..+.+..+|..+++........  ...+.++...+++  .|..|+.++.|..+|.. ++...
T Consensus       235 sp~~~~~la~g~-~d~~i~~wd~~~~~~~~~~~~~--~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~  306 (357)
T 4g56_B          235 HPEKDDTFACGD-ETGNVSLVNIKNPDSAQTSAVH--SQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFR  306 (357)
T ss_dssp             CTTSTTEEEEEE-SSSCEEEEESSCGGGCEEECCC--SSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEE
T ss_pred             hhcccceEEEee-cccceeEEECCCCcEeEEEecc--ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeE
Confidence            333 34 44555 4567888898888765444322  1234556665555  35567888999999975 54443

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.21  E-value=0.085  Score=54.39  Aligned_cols=187  Identities=12%  Similarity=0.008  Sum_probs=108.2

Q ss_pred             CCeEEEEE--CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEE-cCCeEEEEEc-CCeEEEEeCCCcEEEE
Q 006913           88 TGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVST-SSSSVYINVK-GRALFAFMTHGQLLWS  163 (626)
Q Consensus        88 dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d-~dG~LwIgT~-~gGL~a~d~~G~~~w~  163 (626)
                      ++.||+..  .+.|+++++++...    ........     .... ..+..+ .+++||+... .+.|..++++|...-.
T Consensus        46 ~~~lyw~D~~~~~I~r~~~~g~~~----~~~~~~~~-----l~~p-~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  115 (318)
T 3sov_A           46 HGLIYWSDVSEEAIKRTEFNKTES----VQNVVVSG-----LLSP-DGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV  115 (318)
T ss_dssp             GTEEEEEETTTTEEEEEETTSSSC----CCEEEEEC-----CSCC-CEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CCEEEEEECCCCcEEEEEccCCCc----eEEEEcCC-----CCCc-cEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence            57888886  57899999876421    01111100     0111 223445 5889998754 4678888987643222


Q ss_pred             ECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcC--CCeEEEEeCCCCeEEEEEcCCCCCcceeeeeec-CCe
Q 006913          164 AGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT--QGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGN-NGY  240 (626)
Q Consensus       164 ~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~--~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~-dG~  240 (626)
                      ...            ..+   .....+++|..+|.||+...  .+.|++++.++......... .......++.|. +++
T Consensus       116 l~~------------~~~---~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~-~l~~Pnglavd~~~~~  179 (318)
T 3sov_A          116 LFW------------QEL---DQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS-EIYWPNGLTLDYEEQK  179 (318)
T ss_dssp             EEC------------SSC---SSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS-SCSCEEEEEEETTTTE
T ss_pred             EEe------------CCC---CCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC-CCCCccEEEEeccCCE
Confidence            100            000   01234677854789999874  47899999987543322221 223345678885 789


Q ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEEEEE-cCCeEEEEcC-CCCE
Q 006913          241 LYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGS-LDGLLYSFSP-SGVL  303 (626)
Q Consensus       241 LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT-~~gGLy~~d~-~g~~  303 (626)
                      ||++......+..+|.. |..........+ .....+.++ .+.+|+.. .++.|+++++ +|+.
T Consensus       180 lY~aD~~~~~I~~~d~d-G~~~~~~~~~~~-~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~  241 (318)
T 3sov_A          180 LYWADAKLNFIHKSNLD-GTNRQAVVKGSL-PHPFALTLF-EDILYWTDWSTHSILACNKYTGEG  241 (318)
T ss_dssp             EEEEETTTTEEEEEETT-SCSCEEEECSCC-SCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred             EEEEECCCCEEEEEcCC-CCceEEEecCCC-CCceEEEEe-CCEEEEEecCCCeEEEEECCCCCc
Confidence            99998777889999864 332222211111 123456677 45666654 4578999997 4653

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=97.18  E-value=0.26  Score=50.34  Aligned_cols=159  Identities=7%  Similarity=-0.035  Sum_probs=90.6

Q ss_pred             eEEEEEEcCCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCC---C
Q 006913          131 AGIAVSTSSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQ---G  206 (626)
Q Consensus       131 I~s~~~d~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~---G  206 (626)
                      +..+....++.+.+++.++.|..+|.. ++.+..+..       ..  .+...... ..++...+.+..|..++.+   +
T Consensus       189 i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~--~h~~~~~~-i~~i~~~~~~~~l~~~~~d~~~g  258 (397)
T 1sq9_A          189 ATSVDISERGLIATGFNNGTVQISELSTLRPLYNFES-------QH--SMINNSNS-IRSVKFSPQGSLLAIAHDSNSFG  258 (397)
T ss_dssp             CCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEEC-------CC-----CCCCC-EEEEEECSSTTEEEEEEEETTEE
T ss_pred             ceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEec-------cc--cccccCCc-cceEEECCCCCEEEEEecCCCCc
Confidence            334444445566667777889999975 766554310       00  00000011 1334444324557777777   8


Q ss_pred             eEEEEeCCCCeEEEEEcCC------------CCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecC----CC
Q 006913          207 ELYSLSAHSPYFNWIQDLS------------SFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVG----PL  270 (626)
Q Consensus       207 gL~~ld~~tg~~~w~~~~~------------s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~----~l  270 (626)
                      .|..+|.++++........            ....+.++....+|.+.+....++.+..+|..+++........    ..
T Consensus       259 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  338 (397)
T 1sq9_A          259 CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEI  338 (397)
T ss_dssp             EEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSS
T ss_pred             eEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccc
Confidence            8999999888766544320            1123556666666654443335678999999888877665410    00


Q ss_pred             ---------------CCceeeEEEeeCC-----------eEEEEEcCCeEEEEcC
Q 006913          271 ---------------GSAEYAPVVDSNG-----------WISVGSLDGLLYSFSP  299 (626)
Q Consensus       271 ---------------~~~~sspvvD~dG-----------~IWVGT~~gGLy~~d~  299 (626)
                                     ...+..+...++|           .|..|+.++.|..++.
T Consensus       339 ~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~  393 (397)
T 1sq9_A          339 EEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE  393 (397)
T ss_dssp             GGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred             hhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEc
Confidence                           1234556666665           5666777777776653

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=97.18  E-value=0.24  Score=49.90  Aligned_cols=201  Identities=7%  Similarity=-0.080  Sum_probs=108.4

Q ss_pred             ccCeEEecCCeEEE-EE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcC-CeEEEEEcCCeEEEEeC
Q 006913           80 GTAPVHGGTGEVYI-VA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSS-SSVYINVKGRALFAFMT  156 (626)
Q Consensus        80 ~~sp~iD~dG~IwV-gT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~d-G~LwIgT~~gGL~a~d~  156 (626)
                      +.++....+|++.+ ++ ++.|..++..++..   .....+.     .. ...+..+....+ ..|..++.++.|..+|.
T Consensus        11 i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~---~~~~~~~-----~h-~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~   81 (372)
T 1k8k_C           11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW---VQVHELK-----EH-NGQVTGVDWAPDSNRIVTCGTDRNAYVWTL   81 (372)
T ss_dssp             CCEEEECTTSSEEEEECSSSEEEEEEEETTEE---EEEEEEE-----CC-SSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE---Eeeeeec-----CC-CCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence            34555666776544 43 67888888776521   0011111     11 123444444444 45666777777888886


Q ss_pred             C-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEE---EcCCCCCccee
Q 006913          157 H-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWI---QDLSSFDKAFT  232 (626)
Q Consensus       157 ~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~---~~~~s~~~v~s  232 (626)
                      . ++.......    ..      .   ... ..++...+.+..|..++.++.|..+|.+++...+.   ........+.+
T Consensus        82 ~~~~~~~~~~~----~~------~---~~~-v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~  147 (372)
T 1k8k_C           82 KGRTWKPTLVI----LR------I---NRA-ARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLS  147 (372)
T ss_dssp             ETTEEEEEEEC----CC------C---SSC-EEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEE
T ss_pred             CCCeeeeeEEe----ec------C---CCc-eeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeE
Confidence            4 543322100    00      0   011 13344443245677888888888877776653221   11111234566


Q ss_pred             eeeecCCe-EEEEEcCCCEEEEEEC------------------CCCcEEEEEecCCCCCceeeEEEeeCC-eEEEEEcCC
Q 006913          233 LTPGNNGY-LYVTIPVRALVLALDT------------------SSGNILWHKSVGPLGSAEYAPVVDSNG-WISVGSLDG  292 (626)
Q Consensus       233 I~~D~dG~-LwVGT~~gG~l~alD~------------------~tG~~~w~~~~~~l~~~~sspvvD~dG-~IWVGT~~g  292 (626)
                      +....++. |.+++ ..+.+..+|.                  .++.........  ...+.++...+++ .|+.|+.++
T Consensus       148 ~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~  224 (372)
T 1k8k_C          148 LDWHPNSVLLAAGS-CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS--CGWVHGVCFSANGSRVAWVSHDS  224 (372)
T ss_dssp             EEECTTSSEEEEEE-TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC--SSCEEEEEECSSSSEEEEEETTT
T ss_pred             EEEcCCCCEEEEEc-CCCCEEEEEcccccccccccccccccccchhhheEecCCC--CCeEEEEEECCCCCEEEEEeCCC
Confidence            66666675 55555 4567777883                  355555443211  1234556666565 688888899


Q ss_pred             eEEEEcCC-CCEEEE
Q 006913          293 LLYSFSPS-GVLNKF  306 (626)
Q Consensus       293 GLy~~d~~-g~~~~~  306 (626)
                      .|..+|.. ++....
T Consensus       225 ~i~i~d~~~~~~~~~  239 (372)
T 1k8k_C          225 TVCLADADKKMAVAT  239 (372)
T ss_dssp             EEEEEEGGGTTEEEE
T ss_pred             EEEEEECCCCceeEE
Confidence            99999974 655443

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=97.15  E-value=0.41  Score=51.86  Aligned_cols=260  Identities=12%  Similarity=0.025  Sum_probs=137.1

Q ss_pred             EEeeCCEEEE-Ee-CCcEEEEcCCCCEEEEEeCCCCCCcccCeEEecCCeEEE-EE-CCeEEEEECCCCccccceeEEEe
Q 006913           43 LIGEDGKIYA-CS-EKTLFAFESNGTIAWSLDLDFTCNIGTAPVHGGTGEVYI-VA-ENRVLKVDLLKIGTSESATQVFY  118 (626)
Q Consensus        43 vid~dG~IwI-gS-dggL~a~d~~G~~~W~~~~~~~~~i~~sp~iD~dG~IwV-gT-~ggL~~id~~~~~~~~~~~~~~~  118 (626)
                      ....+|...+ ++ ++.+..++.+++...... ... ..+.++....++...+ ++ ++.|...|..+..     .. .+
T Consensus       269 ~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~-~h~-~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-----~~-~~  340 (577)
T 2ymu_A          269 AFRPDGQTIASASDDKTVKLWNRNGQLLQTLT-GHS-SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-----LQ-TL  340 (577)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTSCEEEEEC-CCS-SCEEEEEECTTSSEEEEEETTSCEEEEETTSCE-----EE-EE
T ss_pred             EEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEe-cCC-CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-----eE-EE
Confidence            3334554443 44 456777777766543332 111 2233455566776554 44 5677777876542     11 11


Q ss_pred             cCCCCCCCCCCeeEEEEEEcCC-eEEEEEcCCeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccceEEEcCCC
Q 006913          119 GTGSGKGGTGAIAGIAVSTSSS-SVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEG  197 (626)
Q Consensus       119 ~~~~~~~~~~~~I~s~~~d~dG-~LwIgT~~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG  197 (626)
                      .     .. ...+..+....+| .|..++.++.+..++.+++.......            +   ...+ .++.+.+.+.
T Consensus       341 ~-----~~-~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~------------~---~~~v-~~~~~s~dg~  398 (577)
T 2ymu_A          341 T-----GH-SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG------------H---SSSV-RGVAFSPDGQ  398 (577)
T ss_dssp             C-----CC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEEC------------C---SSCE-EEEEECTTSS
T ss_pred             e-----CC-CCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecC------------C---CCCe-EEEEECCCCC
Confidence            1     11 1233444444454 45666777777788887776544300            0   0111 3344544234


Q ss_pred             eEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeE
Q 006913          198 SIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAP  277 (626)
Q Consensus       198 ~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~ssp  277 (626)
                      .|..+..++.|..+|.++ +....... ....+.++....|+.+.+....++.+..+|. +++........  ...+.++
T Consensus       399 ~l~~~~~d~~v~~~~~~~-~~~~~~~~-~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~--~~~v~~~  473 (577)
T 2ymu_A          399 TIASASDDKTVKLWNRNG-QLLQTLTG-HSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGH--SSSVRGV  473 (577)
T ss_dssp             CEEEEETTSEEEEECTTC-CEEEEEEC-CSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECC--SSCEEEE
T ss_pred             EEEEEeCCCEEEEEeCCC-CEEEEecC-CCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCC--CCCEEEE
Confidence            466677788888888765 43332211 1224556666666654443334577877884 56555443222  1234556


Q ss_pred             EEeeCCe-EEEEEcCCeEEEEcCCCCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEEeeecCeeEE
Q 006913          278 VVDSNGW-ISVGSLDGLLYSFSPSGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLMVVGQFSS  346 (626)
Q Consensus       278 vvD~dG~-IWVGT~~gGLy~~d~~g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~t~~Ggl~~  346 (626)
                      ...++|. |..++.++.|..++.+++.......        ....|.++....+|.+. .++...|.+..
T Consensus       474 ~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~--------h~~~v~~l~~s~dg~~l-~s~~~dg~v~l  534 (577)
T 2ymu_A          474 AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG--------HSSSVRGVAFSPDGQTI-ASASDDKTVKL  534 (577)
T ss_dssp             EECTTSCEEEEEETTSEEEEEETTSCEEEEEEC--------CSSCEEEEEECTTSSCE-EEEETTSEEEE
T ss_pred             EEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeC--------CCCCEEEEEEcCCCCEE-EEEECcCEEEE
Confidence            7776765 5556778889999988876554331        12234556555666643 44444444443

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=97.13  E-value=0.27  Score=49.51  Aligned_cols=233  Identities=9%  Similarity=-0.053  Sum_probs=126.8

Q ss_pred             eeeEEeeCCEEE-EEe-CCcEEEEcC-CCC--EEEEEeCCCCCCcccCeEEecCCeEEE-EE-CCeEEEEECCCCccccc
Q 006913           40 SKPLIGEDGKIY-ACS-EKTLFAFES-NGT--IAWSLDLDFTCNIGTAPVHGGTGEVYI-VA-ENRVLKVDLLKIGTSES  112 (626)
Q Consensus        40 Sspvid~dG~Iw-IgS-dggL~a~d~-~G~--~~W~~~~~~~~~i~~sp~iD~dG~IwV-gT-~ggL~~id~~~~~~~~~  112 (626)
                      .......+|.+. +++ ++.+..+|. +++  ....+....  ..+.++....++.+.+ ++ ++.|..+|..++..   
T Consensus        12 ~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---   86 (372)
T 1k8k_C           12 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHN--GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW---   86 (372)
T ss_dssp             CEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCS--SCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE---
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCC--CcccEEEEeCCCCEEEEEcCCCeEEEEECCCCee---
Confidence            344444566544 454 667888887 554  333332211  2344556666776554 44 67788888766421   


Q ss_pred             eeEEEecCCCCCCCCCCeeEEEEEEcC-CeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccce
Q 006913          113 ATQVFYGTGSGKGGTGAIAGIAVSTSS-SSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVP  190 (626)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~I~s~~~d~d-G~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~ssp  190 (626)
                        .......   .. ...+..+....+ ..|..++.++.+..+|.+ +...+....    +  ..  ..   ... ..++
T Consensus        87 --~~~~~~~---~~-~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~----~--~~--~~---~~~-i~~~  148 (372)
T 1k8k_C           87 --KPTLVIL---RI-NRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH----I--KK--PI---RST-VLSL  148 (372)
T ss_dssp             --EEEEECC---CC-SSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE----E--CT--TC---CSC-EEEE
T ss_pred             --eeeEEee---cC-CCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeee----e--ec--cc---CCC-eeEE
Confidence              1111100   11 223444444444 457777777778887753 432221100    0  00  00   011 1334


Q ss_pred             EEEcCCCeEEEEcCCCeEEEEeCC------------------CCeEEEEEcCCCCCcceeeeeecCC-eEEEEEcCCCEE
Q 006913          191 VIDQCEGSIYISNTQGELYSLSAH------------------SPYFNWIQDLSSFDKAFTLTPGNNG-YLYVTIPVRALV  251 (626)
Q Consensus       191 viD~~dG~LwIGT~~GgL~~ld~~------------------tg~~~w~~~~~s~~~v~sI~~D~dG-~LwVGT~~gG~l  251 (626)
                      ...+.+..|..|+.++.|..+|.+                  .++...... .....+.++....+| .|+.++ .++.+
T Consensus       149 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~d~~i  226 (372)
T 1k8k_C          149 DWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGWVHGVCFSANGSRVAWVS-HDSTV  226 (372)
T ss_dssp             EECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCEEEEEECSSSSEEEEEE-TTTEE
T ss_pred             EEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC-CCCCeEEEEEECCCCCEEEEEe-CCCEE
Confidence            444324457778788889999843                  334433221 112235566666666 555655 45788


Q ss_pred             EEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEEEEEcCCeEEEEcC
Q 006913          252 LALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSP  299 (626)
Q Consensus       252 ~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~  299 (626)
                      ..+|..+++.........  ..+..+...++|.+.++..++.+..++.
T Consensus       227 ~i~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~d~~i~i~~~  272 (372)
T 1k8k_C          227 CLADADKKMAVATLASET--LPLLAVTFITESSLVAAGHDCFPVLFTY  272 (372)
T ss_dssp             EEEEGGGTTEEEEEECSS--CCEEEEEEEETTEEEEEETTSSCEEEEE
T ss_pred             EEEECCCCceeEEEccCC--CCeEEEEEecCCCEEEEEeCCeEEEEEc
Confidence            889988888776554331  2345567777888777778888888875

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=97.13  E-value=0.092  Score=52.56  Aligned_cols=214  Identities=9%  Similarity=0.050  Sum_probs=116.4

Q ss_pred             eeeeEEeeCCE-EEEEe--CCcEEEEcC-CCCEEEEEeCCCC----CCcccCeEEecCCe-EEEEE-C------------
Q 006913           39 LSKPLIGEDGK-IYACS--EKTLFAFES-NGTIAWSLDLDFT----CNIGTAPVHGGTGE-VYIVA-E------------   96 (626)
Q Consensus        39 ~Sspvid~dG~-IwIgS--dggL~a~d~-~G~~~W~~~~~~~----~~i~~sp~iD~dG~-IwVgT-~------------   96 (626)
                      ...+.+..+|+ +|++.  ++.|+.+|. +++..+.......    ......+.++.+|+ +|++. +            
T Consensus        45 ~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  124 (349)
T 1jmx_B           45 PGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP  124 (349)
T ss_dssp             SCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             CceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCC
Confidence            34566666774 77765  467999998 7777666654321    01134566777775 66665 3            


Q ss_pred             CeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccc-c-
Q 006913           97 NRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLG-Y-  173 (626)
Q Consensus        97 ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~-~-  173 (626)
                      +.|+.+|..++..... .......       . .+..+....+|++|++.  +.|+.+|.. ++............+ + 
T Consensus       125 ~~i~~~d~~~~~~~~~-~~~~~~~-------~-~~~~~~~s~dg~l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~  193 (349)
T 1jmx_B          125 PRLEVFSTADGLEAKP-VRTFPMP-------R-QVYLMRAADDGSLYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYS  193 (349)
T ss_dssp             CEEEEEEGGGGGGBCC-SEEEECC-------S-SCCCEEECTTSCEEEES--SSEEEECTTTCCEEEEECSTTCCCTTBC
T ss_pred             CeEEEEECCCccccce-eeeccCC-------C-cccceeECCCCcEEEcc--CcEEEEeCCCCceeccccccccCCcccc
Confidence            7889999876321100 1111110       1 12233345677788864  349999974 777665411000000 0 


Q ss_pred             --------ccccccC-------------------------------CCCCc-----------cccceEEEc-CCCeEEEE
Q 006913          174 --------RQGCTKT-------------------------------DVDCY-----------FTSVPVIDQ-CEGSIYIS  202 (626)
Q Consensus       174 --------~~~~~~~-------------------------------l~~~~-----------i~sspviD~-~dG~LwIG  202 (626)
                              ..+....                               .....           ....+.+++ .+..||++
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~  273 (349)
T 1jmx_B          194 APDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV  273 (349)
T ss_dssp             CCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE
T ss_pred             CccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE
Confidence                    0000000                               00000           000111222 25567877


Q ss_pred             cCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCC-eEEEEEcCCCEEEEEECCCCcEEEEEecC
Q 006913          203 NTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNG-YLYVTIPVRALVLALDTSSGNILWHKSVG  268 (626)
Q Consensus       203 T~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG-~LwVGT~~gG~l~alD~~tG~~~w~~~~~  268 (626)
                        ++.|+.+|.++++.......+.  .+..++.+.+| .||++. ..+.+..+|..+++.+.....+
T Consensus       274 --~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~-~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          274 --LNRLAKYDLKQRKLIKAANLDH--TYYCVAFDKKGDKLYLGG-TFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             --ESEEEEEETTTTEEEEEEECSS--CCCEEEECSSSSCEEEES-BSSEEEEEETTTTEEEEEEECS
T ss_pred             --cCeEEEEECccCeEEEEEcCCC--CccceEECCCCCEEEEec-CCCeEEEEeccccceeeeeecC
Confidence              6789999999988765544322  23455666666 688865 4578999999898877665443

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=97.12  E-value=0.28  Score=49.92  Aligned_cols=270  Identities=7%  Similarity=-0.074  Sum_probs=134.3

Q ss_pred             eeeeEEee-CCEEE-EEe-CCcEEEEcC-CCCEEEEEe--------C---CCCCCcccCeEEec-CCe-EEEEE-CCeEE
Q 006913           39 LSKPLIGE-DGKIY-ACS-EKTLFAFES-NGTIAWSLD--------L---DFTCNIGTAPVHGG-TGE-VYIVA-ENRVL  100 (626)
Q Consensus        39 ~Sspvid~-dG~Iw-IgS-dggL~a~d~-~G~~~W~~~--------~---~~~~~i~~sp~iD~-dG~-IwVgT-~ggL~  100 (626)
                      ........ +|.+. .|+ ++.+..+|. ++.......        .   ......+.++.... ++. +..++ ++.|.
T Consensus        46 v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~  125 (408)
T 4a11_B           46 INTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLK  125 (408)
T ss_dssp             EEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEE
T ss_pred             EEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEE
Confidence            33444445 56544 455 566888886 443211111        0   00011233444444 444 44455 77888


Q ss_pred             EEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEE---cCCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccc
Q 006913          101 KVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVST---SSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQG  176 (626)
Q Consensus       101 ~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d---~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~  176 (626)
                      .+|..++..     ...+..      ...........   ....+..++.++.|..+|.. ++....+..          
T Consensus       126 iwd~~~~~~-----~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~----------  184 (408)
T 4a11_B          126 VWDTNTLQT-----ADVFNF------EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQG----------  184 (408)
T ss_dssp             EEETTTTEE-----EEEEEC------SSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECC----------
T ss_pred             EeeCCCCcc-----ceeccC------CCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecC----------
Confidence            899877531     111111      11111211111   22256777778889999974 655443310          


Q ss_pred             cccCCCCCccccceEEEcCCC-eEEEEcCCCeEEEEeCCCCeEEEEEc-C--------------CCCCcceeeeeecCCe
Q 006913          177 CTKTDVDCYFTSVPVIDQCEG-SIYISNTQGELYSLSAHSPYFNWIQD-L--------------SSFDKAFTLTPGNNGY  240 (626)
Q Consensus       177 ~~~~l~~~~i~sspviD~~dG-~LwIGT~~GgL~~ld~~tg~~~w~~~-~--------------~s~~~v~sI~~D~dG~  240 (626)
                        +   ... ..++...+.+. .+..|+.+|.|..+|.+++......- .              .....+.++....+|.
T Consensus       185 --~---~~~-v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  258 (408)
T 4a11_B          185 --H---RQE-ILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL  258 (408)
T ss_dssp             --C---CSC-EEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS
T ss_pred             --C---CCc-EEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC
Confidence              0   011 13344443123 26678888889999987754211110 0              0112355666666774


Q ss_pred             -EEEEEcCCCEEEEEECCCCcEEEEEecC--C--CCCceeeEEEeeCCeEEEEEcCCeEEEEcCC-CCEEEEeeccCCCC
Q 006913          241 -LYVTIPVRALVLALDTSSGNILWHKSVG--P--LGSAEYAPVVDSNGWISVGSLDGLLYSFSPS-GVLNKFSKSDTSDS  314 (626)
Q Consensus       241 -LwVGT~~gG~l~alD~~tG~~~w~~~~~--~--l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~-g~~~~~~~~~~~~~  314 (626)
                       |.+++ .++.+..+|..+++........  .  ..........+..+.+.+++.++.|..+|.. ++.......     
T Consensus       259 ~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-----  332 (408)
T 4a11_B          259 HLLTVG-TDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKG-----  332 (408)
T ss_dssp             EEEEEE-TTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECC-----
T ss_pred             EEEEec-CCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeecc-----
Confidence             55555 4567888898877653221111  0  0011122223445677777888999999964 555543321     


Q ss_pred             ccccCceEEEEEEecCCcEEEEEeeecCeeE
Q 006913          315 VIQSSPYWFHLLGPSIGLKAILCLMVVGQFS  345 (626)
Q Consensus       315 ~ilssp~V~~Il~DsdG~IwI~T~t~~Ggl~  345 (626)
                         ....|.++....+|.+. .+++..|.+.
T Consensus       333 ---~~~~v~~~~~s~~~~~l-~s~~~dg~i~  359 (408)
T 4a11_B          333 ---HYKTVDCCVFQSNFQEL-YSGSRDCNIL  359 (408)
T ss_dssp             ---CSSCEEEEEEETTTTEE-EEEETTSCEE
T ss_pred             ---CCCeEEEEEEcCCCCEE-EEECCCCeEE
Confidence               12234555555666543 3444444443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.10  E-value=0.33  Score=56.55  Aligned_cols=228  Identities=11%  Similarity=0.051  Sum_probs=124.5

Q ss_pred             CCEEEEEeCCcEEEEcCCC-CEEEEEeCCCCCCcccCeEEec-CCeEEEEE--CCeEEEEECCCCccccceeEEEecCCC
Q 006913           47 DGKIYACSEKTLFAFESNG-TIAWSLDLDFTCNIGTAPVHGG-TGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGS  122 (626)
Q Consensus        47 dG~IwIgSdggL~a~d~~G-~~~W~~~~~~~~~i~~sp~iD~-dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~  122 (626)
                      ...|++.....+..++.++ ...... ...  ....++.+|. ++.||+..  .+.|++++.++..... ......... 
T Consensus       395 ~p~Ll~an~~~Ir~i~l~~~~~~~l~-~~~--~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~-~~~~vi~~~-  469 (791)
T 3m0c_C          395 IAYLFFTNRHEVRKMTLDRSEYTSLI-PNL--RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS-SYDTVISRD-  469 (791)
T ss_dssp             CCEEEEECBSSEEEECTTSCCCEEEE-CSC--SSEEEEEEETTTTEEEEEETTTTEEEEEEC---------CEEEECSS-
T ss_pred             ccccccccccceeEeeccCCcceeee-cCC--CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCc-ceeEEEecC-
Confidence            3455555556677777633 222111 111  1223455565 67899886  5789988876521000 011111110 


Q ss_pred             CCCCCCCeeEEEEEEcCCeEEEEEcC-CeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEE
Q 006913          123 GKGGTGAIAGIAVSTSSSSVYINVKG-RALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYI  201 (626)
Q Consensus       123 ~~~~~~~~I~s~~~d~dG~LwIgT~~-gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwI  201 (626)
                          .....++++-..+++||+.... +.|.+++.+|...-...        .    ..+   .....+++|..+|.||+
T Consensus       470 ----l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~--------~----~~l---~~P~gIaVDp~~g~LYw  530 (791)
T 3m0c_C          470 ----IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF--------R----ENG---SKPRAIVVDPVHGFMYW  530 (791)
T ss_dssp             ----CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEE--------E----CTT---CCEEEEEEETTTTEEEE
T ss_pred             ----CCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEE--------e----CCC---CCcceEEEecCCCCEEE
Confidence                1112233332356799998653 67888898865433220        0    000   01244678864689999


Q ss_pred             EcCC--CeEEEEeCCCCeEEEEEcCCCCCcceeeeee-cCCeEEEEEcCCCEEEEEECCCCcEEEEE-ecC-CCCCceee
Q 006913          202 SNTQ--GELYSLSAHSPYFNWIQDLSSFDKAFTLTPG-NNGYLYVTIPVRALVLALDTSSGNILWHK-SVG-PLGSAEYA  276 (626)
Q Consensus       202 GT~~--GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D-~dG~LwVGT~~gG~l~alD~~tG~~~w~~-~~~-~l~~~~ss  276 (626)
                      ..+.  +.|.+++.++......... .......|++| .+++||++......|..++.. |..+... ... .+. ....
T Consensus       531 tD~g~~~~I~~~~~dG~~~~~lv~~-~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d-G~~~~~v~~~~~~l~-~P~g  607 (791)
T 3m0c_C          531 TDWGTPAKIKKGGLNGVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN-GGNRKTILEDEKRLA-HPFS  607 (791)
T ss_dssp             EECSSSCEEEEEETTSCCEEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEEECTTTTS-SEEE
T ss_pred             ecCCCCCeEEEEecCCCceEEEEeC-CCCCceEEEEecCCCeEEEEeCCCCcEEEEecC-CCceEEEecCCCccC-CCCE
Confidence            8753  5799999987655433221 22345678888 678999998666788888864 4333222 211 111 2234


Q ss_pred             EEEeeCCeEEEEEc-CCeEEEEcC-CCC
Q 006913          277 PVVDSNGWISVGSL-DGLLYSFSP-SGV  302 (626)
Q Consensus       277 pvvD~dG~IWVGT~-~gGLy~~d~-~g~  302 (626)
                      +.++ .++||+... ++.|++++. +|+
T Consensus       608 lav~-~~~lYwtD~~~~~I~~~dk~tG~  634 (791)
T 3m0c_C          608 LAVF-EDKVFWTDIINEAIFSANRLTGS  634 (791)
T ss_dssp             EEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred             EEEe-CCEEEEEECCCCEEEEEeCCCCc
Confidence            5565 568888764 467888875 453

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=97.07  E-value=0.48  Score=51.27  Aligned_cols=255  Identities=11%  Similarity=0.040  Sum_probs=136.3

Q ss_pred             eCCE-EEEEe-CCcEEEEcCCCCEEEEEeCCCCCCcccCeEEecCCe-EEEEE-CCeEEEEECCCCccccceeEEEecCC
Q 006913           46 EDGK-IYACS-EKTLFAFESNGTIAWSLDLDFTCNIGTAPVHGGTGE-VYIVA-ENRVLKVDLLKIGTSESATQVFYGTG  121 (626)
Q Consensus        46 ~dG~-IwIgS-dggL~a~d~~G~~~W~~~~~~~~~i~~sp~iD~dG~-IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~  121 (626)
                      .+|. |..++ ++.+..+|.+++.........  ..+.++....+|. |..+. ++.|...+.+...      ...+.  
T Consensus       190 ~~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~--~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~------~~~~~--  259 (577)
T 2ymu_A          190 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHS--SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL------LQTLT--  259 (577)
T ss_dssp             TTSSCEEEEETTSEEEEECTTSCEEEEEECCS--SCEEEEEECTTSSCEEEEETTSCEEEECTTSCE------EEEEC--
T ss_pred             CCCCEEEEEcCCCEEEEEeCCCcEEEEEecCC--CCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCE------EEEEe--
Confidence            4554 44455 456777777777654443221  2234555666766 44455 5667777765431      11111  


Q ss_pred             CCCCCCCCeeEEEEEEcCC-eEEEEEcCCeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEE
Q 006913          122 SGKGGTGAIAGIAVSTSSS-SVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIY  200 (626)
Q Consensus       122 ~~~~~~~~~I~s~~~d~dG-~LwIgT~~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~Lw  200 (626)
                         .. ...+..+....++ .|..++.++.+..++.+++.......            +   ...+ ..+...+.+..|.
T Consensus       260 ---~~-~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~------------h---~~~v-~~~~~~~~~~~l~  319 (577)
T 2ymu_A          260 ---GH-SSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTG------------H---SSSV-WGVAFSPDGQTIA  319 (577)
T ss_dssp             ---CC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECC------------C---SSCE-EEEEECTTSSEEE
T ss_pred             ---cC-CCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEec------------C---CCCe-EEEEECCCCCEEE
Confidence               11 1233434344444 46666777778888887766543210            0   0111 2334443234566


Q ss_pred             EEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEe
Q 006913          201 ISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVD  280 (626)
Q Consensus       201 IGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD  280 (626)
                      .+..++.|..+|..+..+.....  ....+.+++...+|...+....++.+..+| .+++........  ...+.++.+.
T Consensus       320 t~~~d~~i~~w~~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~-~~~~~~~~~~~~--~~~v~~~~~s  394 (577)
T 2ymu_A          320 SASDDKTVKLWNRNGQHLQTLTG--HSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGH--SSSVRGVAFS  394 (577)
T ss_dssp             EEETTSCEEEEETTSCEEEEECC--CSSCEEEEEECTTSSEEEEEETTSEEEEEE-TTCCEEEEEECC--SSCEEEEEEC
T ss_pred             EEeCCCeEEEEeCCCCeeEEEeC--CCCCEEEEEECCCCCEEEEEeCCCEEEEEc-CCCCEEEEecCC--CCCeEEEEEC
Confidence            67777888888888765543321  123456667777775444333456777778 466665443322  1234556677


Q ss_pred             eCCe-EEEEEcCCeEEEEcCCCCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEEeeecCee
Q 006913          281 SNGW-ISVGSLDGLLYSFSPSGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLMVVGQF  344 (626)
Q Consensus       281 ~dG~-IWVGT~~gGLy~~d~~g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~t~~Ggl  344 (626)
                      ++|. |..|+.++.|..++.+++.......        ....|.++....++... .+....|.+
T Consensus       395 ~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~--------~~~~v~~~~~s~d~~~l-~~~~~d~~v  450 (577)
T 2ymu_A          395 PDGQTIASASDDKTVKLWNRNGQLLQTLTG--------HSSSVWGVAFSPDDQTI-ASASDDKTV  450 (577)
T ss_dssp             TTSSCEEEEETTSEEEEECTTCCEEEEEEC--------CSSCEEEEEECTTSSEE-EEEETTSEE
T ss_pred             CCCCEEEEEeCCCEEEEEeCCCCEEEEecC--------CCCCeEEEEECCCCCEE-EEEcCCCEE
Confidence            6664 6667888889999987765543321        12234455555555543 343333433

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.06  E-value=0.081  Score=54.44  Aligned_cols=229  Identities=11%  Similarity=0.093  Sum_probs=121.2

Q ss_pred             eeeeEEeeCCEEEEEe-CCcEEEEcCCCCEEEEEeCCCC--CCcccCeEEecCCeEEEEE-CCeEEEEECCCCcccccee
Q 006913           39 LSKPLIGEDGKIYACS-EKTLFAFESNGTIAWSLDLDFT--CNIGTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSESAT  114 (626)
Q Consensus        39 ~Sspvid~dG~IwIgS-dggL~a~d~~G~~~W~~~~~~~--~~i~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~  114 (626)
                      +....++ ++.+|++. .+.|++-...|+ .|.......  ......+....++.+|+++ .++|++- .+.+.      
T Consensus        82 ~~~i~~~-~~~~~~~g~~g~i~~S~DgG~-tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S-~DgG~------  152 (327)
T 2xbg_A           82 FNSVSFQ-GNEGWIVGEPPIMLHTTDGGQ-SWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRT-KDSGK------  152 (327)
T ss_dssp             EEEEEEE-TTEEEEEEETTEEEEESSTTS-SCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEE-SSTTS------
T ss_pred             EEEEEec-CCeEEEEECCCeEEEECCCCC-CceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEE-cCCCC------
Confidence            4444554 47889876 455665433344 575532110  0112334445678899887 5566654 44332      


Q ss_pred             EEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccceEEEc
Q 006913          115 QVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQ  194 (626)
Q Consensus       115 ~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~  194 (626)
                      .|......   ... .+..+....++.+|+....++++.-+..|...|....   . +      .   ...+ ..+.++.
T Consensus       153 tW~~~~~~---~~~-~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~---~-~------~---~~~~-~~~~~~~  214 (327)
T 2xbg_A          153 NWQALVQE---AIG-VMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN---R-T------T---SRRL-HNMGFTP  214 (327)
T ss_dssp             SEEEEECS---CCC-CEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE---C-C------S---SSCE-EEEEECT
T ss_pred             CCEEeecC---CCc-ceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC---C-C------C---CCcc-ceeEECC
Confidence            23221111   111 2334445567888887777777776544333465300   0 0      0   0111 3345564


Q ss_pred             CCCeEEEEcCCCeEEEEeCCCCeEEEEEcC-C---CCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecC--
Q 006913          195 CEGSIYISNTQGELYSLSAHSPYFNWIQDL-S---SFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVG--  268 (626)
Q Consensus       195 ~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~-~---s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~--  268 (626)
                       ++.+|+.+.+|.++.-+.++ -..|.... +   ....+..+..+.++.+|+++.. +.++.-  .++-..|.....  
T Consensus       215 -~g~~~~~~~~G~~~~s~~D~-G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~-g~i~~S--~DgG~tW~~~~~~~  289 (327)
T 2xbg_A          215 -DGRLWMIVNGGKIAFSDPDN-SENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGA-GALLCS--QDGGQTWQQDVDVK  289 (327)
T ss_dssp             -TSCEEEEETTTEEEEEETTE-EEEECCCBCTTSSCCSCEEEEEESSSSCEEEEEST-TCEEEE--SSTTSSCEECGGGT
T ss_pred             -CCCEEEEeCCceEEEecCCC-CCeeEeccCCcccCCcceEEEEecCCCEEEEEeCC-CeEEEe--CCCCcccEEcCccC
Confidence             78999988777666543343 34576321 2   1122455666667899998754 455432  233356764221  


Q ss_pred             CCCCceeeEEEeeCCeEEEEEcCCeEEEEcC
Q 006913          269 PLGSAEYAPVVDSNGWISVGSLDGLLYSFSP  299 (626)
Q Consensus       269 ~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~  299 (626)
                      .....+..+..+.++.+|+++.+|.|++++.
T Consensus       290 ~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          290 KVPSNFYKILFFSPDQGFILGQKGILLRYVT  320 (327)
T ss_dssp             TSSSCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred             CCCCCeEEEEEECCCceEEEcCCceEEEEcC
Confidence            1111233455555788999988888888864

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.06  E-value=0.33  Score=51.04  Aligned_cols=188  Identities=13%  Similarity=0.093  Sum_probs=94.2

Q ss_pred             EEeeCCEEEEEe--------------CCcEEEEcCC---CCEE-EEEeCC-CC----CCcccCeEEecCC--eEEEEE-C
Q 006913           43 LIGEDGKIYACS--------------EKTLFAFESN---GTIA-WSLDLD-FT----CNIGTAPVHGGTG--EVYIVA-E   96 (626)
Q Consensus        43 vid~dG~IwIgS--------------dggL~a~d~~---G~~~-W~~~~~-~~----~~i~~sp~iD~dG--~IwVgT-~   96 (626)
                      .++.+|.+|+++              .|.|+.+|.+   ++.. +...-. ..    .....+...|.+|  +|||+. .
T Consensus        56 ~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~  135 (355)
T 3sre_A           56 EILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHP  135 (355)
T ss_dssp             EECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECS
T ss_pred             EEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECC
Confidence            455689999985              4568888863   3332 222110 00    0111123333345  477774 2


Q ss_pred             C-----eEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEc------------------CCeEEE
Q 006913           97 N-----RVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVK------------------GRALFA  153 (626)
Q Consensus        97 g-----gL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~------------------~gGL~a  153 (626)
                      .     +|+.+++.+...     .+.-... ..  .-...+....+.+|.+|+++.                  .+.|++
T Consensus       136 ~~~s~ielf~~d~~~~~~-----~~~~~~~-g~--~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr  207 (355)
T 3sre_A          136 GSSSTVEVFKFQEEEKSL-----LHLKTIR-HK--LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY  207 (355)
T ss_dssp             TTCCEEEEEEEETTTTEE-----EEEEEEC-CT--TCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred             CCCCeEEEEEEECCCCEE-----EEEeccc-cC--CCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence            1     488888876421     1111111 11  112334566788999999864                  246788


Q ss_pred             EeCCCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcC-CCeEEEEeCCC-CeEEEEEcCCCCCcce
Q 006913          154 FMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT-QGELYSLSAHS-PYFNWIQDLSSFDKAF  231 (626)
Q Consensus       154 ~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~-~GgL~~ld~~t-g~~~w~~~~~s~~~v~  231 (626)
                      +++. +..-..    ..+.             +..-++..+.+..||++.. .+.|++++.+. |...-..........-
T Consensus       208 ~d~~-~~~~~~----~~l~-------------~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PD  269 (355)
T 3sre_A          208 YSPN-DVRVVA----EGFD-------------FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVD  269 (355)
T ss_dssp             ECTT-CCEEEE----EEES-------------SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEE
T ss_pred             EECC-eEEEee----cCCc-------------ccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCc
Confidence            8773 221111    0000             1122455542457898754 56788887642 3332211111111233


Q ss_pred             eeeeec-CCeEEEEE-cCCCEEEEEEC
Q 006913          232 TLTPGN-NGYLYVTI-PVRALVLALDT  256 (626)
Q Consensus       232 sI~~D~-dG~LwVGT-~~gG~l~alD~  256 (626)
                      .+++|. +|+||++. .+++.+.++++
T Consensus       270 Gi~vD~e~G~lwva~~~~g~~v~~~~P  296 (355)
T 3sre_A          270 NISVDPVTGDLWVGCHPNGMRIFFYDA  296 (355)
T ss_dssp             EEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred             eEEEeCCCCcEEEEecCCceEEEEECC
Confidence            578898 59999965 33333443443

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.06  E-value=0.12  Score=58.48  Aligned_cols=188  Identities=16%  Similarity=0.097  Sum_probs=113.4

Q ss_pred             eEEe-eCCEEEEEe--CCcEEEEcCCCC-EEEEEeCCCCCCcccCeEEec-CCeEEEEE--CCeEEEEECCCCcccccee
Q 006913           42 PLIG-EDGKIYACS--EKTLFAFESNGT-IAWSLDLDFTCNIGTAPVHGG-TGEVYIVA--ENRVLKVDLLKIGTSESAT  114 (626)
Q Consensus        42 pvid-~dG~IwIgS--dggL~a~d~~G~-~~W~~~~~~~~~i~~sp~iD~-dG~IwVgT--~ggL~~id~~~~~~~~~~~  114 (626)
                      ...| .+|.||+..  .+.+++++.+|. .......+.  .....+.+|. .++||++.  .+.|.++++++..     .
T Consensus        42 l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~--~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~-----~  114 (628)
T 4a0p_A           42 LDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGL--DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH-----R  114 (628)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC--SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT-----C
T ss_pred             EEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCC--CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc-----E
Confidence            3444 368898876  567888887653 211122111  1233567774 58899886  5789999987642     1


Q ss_pred             EEEecCCCCCCCCCCeeEEEEEE-cCCeEEEEEc--CCeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccceE
Q 006913          115 QVFYGTGSGKGGTGAIAGIAVST-SSSSVYINVK--GRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPV  191 (626)
Q Consensus       115 ~~~~~~~~~~~~~~~~I~s~~~d-~dG~LwIgT~--~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspv  191 (626)
                      .......    . ... ..+..+ .+|.||+...  ...|...+++|...-....   .+             .....++
T Consensus       115 ~~l~~~~----l-~~P-~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~---~~-------------~~P~Gla  172 (628)
T 4a0p_A          115 QVLVWKD----L-DSP-RALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP---NV-------------GRANGLT  172 (628)
T ss_dssp             EEEECSS----C-CCE-EEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC---SC-------------SSEEEEE
T ss_pred             EEEEeCC----C-CCc-ccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC---CC-------------CCcceEE
Confidence            2222111    1 122 334455 5899999874  3678889887654322100   00             0123367


Q ss_pred             EEcCCCeEEEEcC-CCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcE
Q 006913          192 IDQCEGSIYISNT-QGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNI  261 (626)
Q Consensus       192 iD~~dG~LwIGT~-~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~  261 (626)
                      +|..+++||++.. .+.|.+++.++........  .......++++. ++||+.....+.+..+|+.+|+.
T Consensus       173 lD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~--~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~  240 (628)
T 4a0p_A          173 IDYAKRRLYWTDLDTNLIESSNMLGLNREVIAD--DLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQN  240 (628)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSCEEEEE--CCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred             EccccCEEEEEECCCCEEEEEcCCCCceEEeec--cCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCc
Confidence            7754688988865 5679999988755432222  123455677774 79999887778999999877753

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.04  E-value=0.42  Score=50.21  Aligned_cols=184  Identities=9%  Similarity=0.020  Sum_probs=111.9

Q ss_pred             CCe-EEEEE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC-CcEEEEE
Q 006913           88 TGE-VYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH-GQLLWSA  164 (626)
Q Consensus        88 dG~-IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~-G~~~w~~  164 (626)
                      +|. +..|+ ++.|..+|..++..     ...+.     .... .|..+.. .+..|..|+.++.|..+|.. ++....+
T Consensus       142 d~~~l~~g~~dg~i~iwd~~~~~~-----~~~~~-----~h~~-~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~  209 (435)
T 1p22_A          142 DDQKIVSGLRDNTIKIWDKNTLEC-----KRILT-----GHTG-SVLCLQY-DERVIITGSSDSTVRVWDVNTGEMLNTL  209 (435)
T ss_dssp             CSSEEEEEESSSCEEEEESSSCCE-----EEEEC-----CCSS-CEEEEEC-CSSEEEEEETTSCEEEEESSSCCEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEeCCCCeE-----EEEEc-----CCCC-cEEEEEE-CCCEEEEEcCCCeEEEEECCCCcEEEEE
Confidence            444 44555 78899999877531     22221     1112 2333222 45677888888889999975 7766543


Q ss_pred             CCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEE-Ec-CCCCCcceeeeeecCCeEE
Q 006913          165 GPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWI-QD-LSSFDKAFTLTPGNNGYLY  242 (626)
Q Consensus       165 ~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~-~~-~~s~~~v~sI~~D~dG~Lw  242 (626)
                      ..            +   ...+ .++..+  ++.|..|+.++.|..+|.+++..... .. .+....+.++..+ ...|.
T Consensus       210 ~~------------h---~~~v-~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~  270 (435)
T 1p22_A          210 IH------------H---CEAV-LHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD-DKYIV  270 (435)
T ss_dssp             CC------------C---CSCE-EEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE-TTEEE
T ss_pred             cC------------C---CCcE-EEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC-CCEEE
Confidence            10            0   0111 223333  67888898899999999987654321 11 1112345555553 45677


Q ss_pred             EEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEEEEEcCCeEEEEcCC-CCEEEE
Q 006913          243 VTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPS-GVLNKF  306 (626)
Q Consensus       243 VGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~-g~~~~~  306 (626)
                      +|+ .++.+..+|..+++.........  ..+.++..+ ++.+..|+.++.|..+|.. ++....
T Consensus       271 s~~-~dg~i~vwd~~~~~~~~~~~~~~--~~v~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~  331 (435)
T 1p22_A          271 SAS-GDRTIKVWNTSTCEFVRTLNGHK--RGIACLQYR-DRLVVSGSSDNTIRLWDIECGACLRV  331 (435)
T ss_dssp             EEE-TTSEEEEEETTTCCEEEEEECCS--SCEEEEEEE-TTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             EEe-CCCeEEEEECCcCcEEEEEcCCC--CcEEEEEeC-CCEEEEEeCCCeEEEEECCCCCEEEE
Confidence            776 45788899999998876654321  223445554 6789999999999999975 655443

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=97.04  E-value=0.32  Score=58.50  Aligned_cols=243  Identities=7%  Similarity=0.025  Sum_probs=129.6

Q ss_pred             eeCCEEE-EEeCCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE--CCeEEEEECCCCccccceeEEEecC
Q 006913           45 GEDGKIY-ACSEKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGT  120 (626)
Q Consensus        45 d~dG~Iw-IgSdggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~  120 (626)
                      ..+|... +++++.+..++. ++........... ..+.++....++.+.+..  ++.|..++..++..     ...+. 
T Consensus       807 s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~-----~~~~~-  879 (1249)
T 3sfz_A          807 SADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHH-STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLK-----VADCR-  879 (1249)
T ss_dssp             CTTSSEEEEEETTEEEEEETTTCCEEEEEECSSS-SCCCEEEECSSTTEEEEECSSSCEEEEETTTTEE-----EEEEC-
T ss_pred             CCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCC-CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce-----eeecC-
Confidence            3455544 455788999997 7766554433221 233455566677755544  67888888877531     11111 


Q ss_pred             CCCCCCCCCeeEEEEEEcCC-eEEEEEcCCeEEEEeCC-Cc--------------------EEEEECC--cccccccccc
Q 006913          121 GSGKGGTGAIAGIAVSTSSS-SVYINVKGRALFAFMTH-GQ--------------------LLWSAGP--VLDQLGYRQG  176 (626)
Q Consensus       121 ~~~~~~~~~~I~s~~~d~dG-~LwIgT~~gGL~a~d~~-G~--------------------~~w~~~~--~~~~~~~~~~  176 (626)
                          ... ..+..+....+| .|..++.++.+..++.. +.                    .......  .........+
T Consensus       880 ----~h~-~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  954 (1249)
T 3sfz_A          880 ----GHL-SWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTG  954 (1249)
T ss_dssp             ----CCS-SCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSC
T ss_pred             ----CCc-cceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcc
Confidence                111 233444444444 46666666667776632 10                    0000000  0000000000


Q ss_pred             cccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEEC
Q 006913          177 CTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDT  256 (626)
Q Consensus       177 ~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~  256 (626)
                      ......... ..+....+.+..+.+|+.+|.|..++..+++...... .....+.++....+|...+....++.+...|.
T Consensus       955 ~~~~~~~~~-i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~-~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~ 1032 (1249)
T 3sfz_A          955 QIDYLPEAQ-VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV-GHKKAVRHIQFTADGKTLISSSEDSVIQVWNW 1032 (1249)
T ss_dssp             CEEEECCSC-EEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECC-CCSSCCCCEEECSSSSCEEEECSSSBEEEEET
T ss_pred             eEEEcccCc-EEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecc-cCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence            000000011 1223344335567788889999999998877654322 11223555666667754444435578888898


Q ss_pred             CCCcEEEEEecCCCCCceeeEEEeeCCeEEEEEcCCeEEEEcCC-CCEE
Q 006913          257 SSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPS-GVLN  304 (626)
Q Consensus       257 ~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~-g~~~  304 (626)
                      .++........   ...+..+...+++.+..++.++.+..+|.. ++..
T Consensus      1033 ~~~~~~~~~~~---~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~ 1078 (1249)
T 3sfz_A         1033 QTGDYVFLQAH---QETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIE 1078 (1249)
T ss_dssp             TTTEEECCBCC---SSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCC
T ss_pred             CCCceEEEecC---CCcEEEEEEcCCCcEEEEECCCcEEEEECCCCcee
Confidence            88876532211   123455666778999999999999999964 5543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=97.00  E-value=1.1  Score=53.95  Aligned_cols=231  Identities=10%  Similarity=-0.003  Sum_probs=131.8

Q ss_pred             eeeeEEeeCCEEEE-Ee-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEE-E-CCeEEEEECCCCccccce
Q 006913           39 LSKPLIGEDGKIYA-CS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIV-A-ENRVLKVDLLKIGTSESA  113 (626)
Q Consensus        39 ~Sspvid~dG~IwI-gS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVg-T-~ggL~~id~~~~~~~~~~  113 (626)
                      ........+|.+.+ |+ ++.+..+|. ++.....+....  ..+.++....+|.+.+. + ++.|..+|..++..    
T Consensus       618 v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~----  691 (1249)
T 3sfz_A          618 VYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHE--DEVLCCAFSSDDSYIATCSADKKVKIWDSATGKL----  691 (1249)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE----
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCC--CCEEEEEEecCCCEEEEEeCCCeEEEEECCCCce----
Confidence            34444546665544 45 567888887 777655443211  23445666677765544 4 67899999887642    


Q ss_pred             eEEEecCCCCCCCCCCeeEEEEEEc--CC-eEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccc
Q 006913          114 TQVFYGTGSGKGGTGAIAGIAVSTS--SS-SVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSV  189 (626)
Q Consensus       114 ~~~~~~~~~~~~~~~~~I~s~~~d~--dG-~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~ss  189 (626)
                       ...+..     ... .+..+....  ++ .+..|+.++.|..+|.. ++.......            +   ...+ .+
T Consensus       692 -~~~~~~-----~~~-~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~------------h---~~~v-~~  748 (1249)
T 3sfz_A          692 -VHTYDE-----HSE-QVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG------------H---TNSV-NH  748 (1249)
T ss_dssp             -EEEEEC-----CSS-CEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECC------------C---SSCE-EE
T ss_pred             -EEEEcC-----CCC-cEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecC------------C---CCCE-EE
Confidence             222211     112 233333322  22 34556777778899974 766554310            0   0111 23


Q ss_pred             eEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCC------------CCcceeeeeecCCeEEEEEcCCCEEEEEECC
Q 006913          190 PVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSS------------FDKAFTLTPGNNGYLYVTIPVRALVLALDTS  257 (626)
Q Consensus       190 pviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s------------~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~  257 (626)
                      +...+.+..|..++.+|.|..+|..++..........            ...+.++....+|...+... .+.+..+|..
T Consensus       749 ~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~  827 (1249)
T 3sfz_A          749 CRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIH  827 (1249)
T ss_dssp             EEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETT
T ss_pred             EEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEec
Confidence            3444324567778888889999998876654432110            01234455566776655553 4688889998


Q ss_pred             CCcEEEEEecCCCCCceeeEEEeeCC-eEEEEEcCCeEEEEcCC
Q 006913          258 SGNILWHKSVGPLGSAEYAPVVDSNG-WISVGSLDGLLYSFSPS  300 (626)
Q Consensus       258 tG~~~w~~~~~~l~~~~sspvvD~dG-~IWVGT~~gGLy~~d~~  300 (626)
                      ++........+. ...+.++...+++ .+.+|+.++.+..++..
T Consensus       828 ~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~  870 (1249)
T 3sfz_A          828 TSGLLAEIHTGH-HSTIQYCDFSPYDHLAVIALSQYCVELWNID  870 (1249)
T ss_dssp             TCCEEEEEECSS-SSCCCEEEECSSTTEEEEECSSSCEEEEETT
T ss_pred             CCCceeEEcCCC-CCceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Confidence            888776554332 1223445555555 56667778888889875

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=96.99  E-value=0.44  Score=49.50  Aligned_cols=221  Identities=10%  Similarity=-0.005  Sum_probs=129.4

Q ss_pred             CCEEEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeE-EEEE-CCeEEEEECCCCccccceeEEEecCCC
Q 006913           47 DGKIYACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEV-YIVA-ENRVLKVDLLKIGTSESATQVFYGTGS  122 (626)
Q Consensus        47 dG~IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~I-wVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~  122 (626)
                      .+.+.+++ ++.++.+|. +|+.......... ..+.++....+|.+ .+++ ++.|..+|..++..     ...+.   
T Consensus       103 ~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~-~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~---  173 (401)
T 4aez_A          103 NLNVVAVALERNVYVWNADSGSVSALAETDES-TYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTK-----LRTMA---  173 (401)
T ss_dssp             TTSEEEEEETTEEEEEETTTCCEEEEEECCTT-CCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----EEEEC---
T ss_pred             CCCEEEEECCCeEEEeeCCCCcEeEeeecCCC-CCEEEEEECCCCCEEEEECCCCeEEEEECcCCeE-----EEEec---
Confidence            34455555 778999998 7776654443221 23445556667664 4455 77888999877531     22221   


Q ss_pred             CCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC--CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEE
Q 006913          123 GKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH--GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIY  200 (626)
Q Consensus       123 ~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~--G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~Lw  200 (626)
                        .... .+..+.. .+..+..++.++.|..+|..  +........            +.   .. ...+...+.+..|.
T Consensus       174 --~~~~-~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------~~---~~-v~~~~~~~~~~~l~  233 (401)
T 4aez_A          174 --GHQA-RVGCLSW-NRHVLSSGSRSGAIHHHDVRIANHQIGTLQG------------HS---SE-VCGLAWRSDGLQLA  233 (401)
T ss_dssp             --CCSS-CEEEEEE-ETTEEEEEETTSEEEEEETTSSSCEEEEEEC------------CS---SC-EEEEEECTTSSEEE
T ss_pred             --CCCC-ceEEEEE-CCCEEEEEcCCCCEEEEecccCcceeeEEcC------------CC---CC-eeEEEEcCCCCEEE
Confidence              1112 3333333 45678888888889999964  433332200            00   11 12334443245677


Q ss_pred             EEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCC-eEEEEEc--CCCEEEEEECCCCcEEEEEecCCCCCceeeE
Q 006913          201 ISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNG-YLYVTIP--VRALVLALDTSSGNILWHKSVGPLGSAEYAP  277 (626)
Q Consensus       201 IGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG-~LwVGT~--~gG~l~alD~~tG~~~w~~~~~~l~~~~ssp  277 (626)
                      .|+.++.|..+|.++++........ ...+.++....++ .+++...  ..+.+..+|..+++........   ..+.++
T Consensus       234 s~~~d~~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~---~~v~~~  309 (401)
T 4aez_A          234 SGGNDNVVQIWDARSSIPKFTKTNH-NAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG---SQVTSL  309 (401)
T ss_dssp             EEETTSCEEEEETTCSSEEEEECCC-SSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS---SCEEEE
T ss_pred             EEeCCCeEEEccCCCCCccEEecCC-cceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC---CcEEEE
Confidence            8888899999999987766543311 2234555555544 4555332  3578889999899887766543   235556


Q ss_pred             EEeeCCeEEEE---EcCCeEEEEcCC
Q 006913          278 VVDSNGWISVG---SLDGLLYSFSPS  300 (626)
Q Consensus       278 vvD~dG~IWVG---T~~gGLy~~d~~  300 (626)
                      ...++|...+.   ..++.|..++..
T Consensus       310 ~~s~~~~~l~~~~g~~dg~i~v~~~~  335 (401)
T 4aez_A          310 IWSPHSKEIMSTHGFPDNNLSIWSYS  335 (401)
T ss_dssp             EECSSSSEEEEEECTTTCEEEEEEEE
T ss_pred             EECCCCCeEEEEeecCCCcEEEEecC
Confidence            67666654443   357888888854

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=96.94  E-value=0.37  Score=47.81  Aligned_cols=226  Identities=11%  Similarity=0.054  Sum_probs=115.8

Q ss_pred             CEEEEEe--CCcEEEEcC--CCCEE--EEEeCCCCCCcccCeEEecCCe-EEEEE-C-CeEEEEECC--CCccccceeEE
Q 006913           48 GKIYACS--EKTLFAFES--NGTIA--WSLDLDFTCNIGTAPVHGGTGE-VYIVA-E-NRVLKVDLL--KIGTSESATQV  116 (626)
Q Consensus        48 G~IwIgS--dggL~a~d~--~G~~~--W~~~~~~~~~i~~sp~iD~dG~-IwVgT-~-ggL~~id~~--~~~~~~~~~~~  116 (626)
                      ..+|++.  ++.+..++.  +|...  ......   .....+..+.+|+ ||++. + +.|..++..  ++..   ....
T Consensus         5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~---~~~~   78 (343)
T 1ri6_A            5 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVP---GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL---TFAA   78 (343)
T ss_dssp             EEEEEEEGGGTEEEEEEECTTSCEEEEEEEECS---SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE---EEEE
T ss_pred             EEEEEeCCCCCeEEEEEECCCCcEEEeeeEecC---CCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce---eecc
Confidence            4567763  566777765  35432  222221   1234566677777 77776 3 778776654  4321   0011


Q ss_pred             EecCCCCCCCCCCeeEEEEEEcCC-eEEEEEcC-CeEEEEeC-CCcEEEEECCcccccccccccccCCCCCccccceEEE
Q 006913          117 FYGTGSGKGGTGAIAGIAVSTSSS-SVYINVKG-RALFAFMT-HGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVID  193 (626)
Q Consensus       117 ~~~~~~~~~~~~~~I~s~~~d~dG-~LwIgT~~-gGL~a~d~-~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD  193 (626)
                      .+...      . .+..+....+| .||++... +.|..++. +|.......    .+.  .       ... ...+..+
T Consensus        79 ~~~~~------~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~----~~~--~-------~~~-~~~~~~s  137 (343)
T 1ri6_A           79 ESALP------G-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVD----VVE--G-------LDG-CHSANIS  137 (343)
T ss_dssp             EEECS------S-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEE----EEC--C-------CTT-BCCCEEC
T ss_pred             ccccC------C-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccc----ccc--C-------CCC-ceEEEEC
Confidence            11110      1 12223334455 47787763 45778876 333211110    000  0       001 1334555


Q ss_pred             cCCCeEEEEc-CCCeEEEEeCCC-CeEEEEE----cCCCCCcceeeeeecCCe-EEEEEcCCCEEEEEEC--CCCcEEEE
Q 006913          194 QCEGSIYISN-TQGELYSLSAHS-PYFNWIQ----DLSSFDKAFTLTPGNNGY-LYVTIPVRALVLALDT--SSGNILWH  264 (626)
Q Consensus       194 ~~dG~LwIGT-~~GgL~~ld~~t-g~~~w~~----~~~s~~~v~sI~~D~dG~-LwVGT~~gG~l~alD~--~tG~~~w~  264 (626)
                      +.+..||++. .++.|..+|.++ +++....    .......+..+..+.+|. ||++....+.+..++.  .+|.....
T Consensus       138 ~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~  217 (343)
T 1ri6_A          138 PDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECV  217 (343)
T ss_dssp             TTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEE
T ss_pred             CCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEE
Confidence            4234688887 677899988876 6553221    111112344566777775 8887755567777776  34554321


Q ss_pred             --Ee-cCC-C--CCceeeEEEeeCC-eEEEEE-cCCeEEEEcCC
Q 006913          265 --KS-VGP-L--GSAEYAPVVDSNG-WISVGS-LDGLLYSFSPS  300 (626)
Q Consensus       265 --~~-~~~-l--~~~~sspvvD~dG-~IWVGT-~~gGLy~~d~~  300 (626)
                        .. ... .  ......+..+++| .||++. .++.|..++..
T Consensus       218 ~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          218 QTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS  261 (343)
T ss_dssp             EEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             eeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence              11 111 0  0123346777777 577766 46678888754

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=96.93  E-value=0.57  Score=49.87  Aligned_cols=240  Identities=14%  Similarity=0.133  Sum_probs=132.2

Q ss_pred             eEEeeCCE-EEEEe-----------CCcEEEEcC-CCCEEEEEeCCCC-----CCcccCeEEecCCe-EEEEE---CCeE
Q 006913           42 PLIGEDGK-IYACS-----------EKTLFAFES-NGTIAWSLDLDFT-----CNIGTAPVHGGTGE-VYIVA---ENRV   99 (626)
Q Consensus        42 pvid~dG~-IwIgS-----------dggL~a~d~-~G~~~W~~~~~~~-----~~i~~sp~iD~dG~-IwVgT---~ggL   99 (626)
                      +.+..+|+ +|++.           ++.+..+|. +++..-.+..+..     ...-..+.++.+|+ +|++.   .+.|
T Consensus        83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V  162 (386)
T 3sjl_D           83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV  162 (386)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred             EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE
Confidence            66666664 88875           246899998 7877655544320     01123456777776 88875   3689


Q ss_pred             EEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeC-C-CcEEEEECCccccccccccc
Q 006913          100 LKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMT-H-GQLLWSAGPVLDQLGYRQGC  177 (626)
Q Consensus       100 ~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~-~-G~~~w~~~~~~~~~~~~~~~  177 (626)
                      ..+|..+++.     .-.+..      .+ .. .+.......++..+.++.+..++. . |+..-....   .+.     
T Consensus       163 sVID~~t~~v-----v~tI~v------~g-~~-~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~---~~~-----  221 (386)
T 3sjl_D          163 GVVDLEGKAF-----KRMLDV------PD-CY-HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTE---VFH-----  221 (386)
T ss_dssp             EEEETTTTEE-----EEEEEC------CS-EE-EEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECC---CCS-----
T ss_pred             EEEECCCCcE-----EEEEEC------CC-cc-eeecCCCceeEEECCCCCEEEEECCCCCeEEEeecc---eec-----
Confidence            9999988632     111110      01 11 111122233444455666666664 2 554221100   000     


Q ss_pred             ccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCC---------C--CCcceeeeeec-CCeEEEEE
Q 006913          178 TKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLS---------S--FDKAFTLTPGN-NGYLYVTI  245 (626)
Q Consensus       178 ~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~---------s--~~~v~sI~~D~-dG~LwVGT  245 (626)
                         .....+...+..+..+|++++.+.+|.++.+|..++.........         .  ......+.++. .++|||..
T Consensus       222 ---~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~  298 (386)
T 3sjl_D          222 ---PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLV  298 (386)
T ss_dssp             ---CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEE
T ss_pred             ---cccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEe
Confidence               001122223444423777766677889999999876533211110         0  00111234443 45999986


Q ss_pred             cC---------CCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCe--EEEEEc-CCeEEEEcCC-CCEEEEee
Q 006913          246 PV---------RALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGW--ISVGSL-DGLLYSFSPS-GVLNKFSK  308 (626)
Q Consensus       246 ~~---------gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~--IWVGT~-~gGLy~~d~~-g~~~~~~~  308 (626)
                      ..         +..+..+|.++++.+-....+.   ...++.++.||.  +|+... ++.|..+|.. ++.+....
T Consensus       299 ~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~---~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~  371 (386)
T 3sjl_D          299 DQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN  371 (386)
T ss_dssp             EECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE---EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             ccccccccCCCCCEEEEEECCCCeEEEEEECCC---CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEec
Confidence            31         2468899999999876655541   233577777774  666554 5789999974 77665443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.93  E-value=0.47  Score=53.81  Aligned_cols=197  Identities=5%  Similarity=-0.135  Sum_probs=108.9

Q ss_pred             ccCeEEecCCeEE-EEE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEE-EEcCCeEEEEEcCCeEEEEeC
Q 006913           80 GTAPVHGGTGEVY-IVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAV-STSSSSVYINVKGRALFAFMT  156 (626)
Q Consensus        80 ~~sp~iD~dG~Iw-VgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~-~d~dG~LwIgT~~gGL~a~d~  156 (626)
                      +.++....+|... ++. ++.|..+|..++..     ...+.     .... .+..+. ...+..|.+++.++.|..+|.
T Consensus        16 v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~-----~~~~~-----~~~~-~v~~~~~s~~~~~l~~~~~dg~i~vw~~   84 (814)
T 3mkq_A           16 VKGIDFHPTEPWVLTTLYSGRVEIWNYETQVE-----VRSIQ-----VTET-PVRAGKFIARKNWIIVGSDDFRIRVFNY   84 (814)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTTTEE-----EEEEE-----CCSS-CEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEECCCCce-----EEEEe-----cCCC-cEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence            3345555666644 444 67788888776531     11111     1112 334433 344456778888888999996


Q ss_pred             C-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeee
Q 006913          157 H-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTP  235 (626)
Q Consensus       157 ~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~  235 (626)
                      . |+.......            +   ... ..++...+.+..|..++.+|.|..+|.+++.............+.++..
T Consensus        85 ~~~~~~~~~~~------------~---~~~-v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~  148 (814)
T 3mkq_A           85 NTGEKVVDFEA------------H---PDY-IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF  148 (814)
T ss_dssp             TTCCEEEEEEC------------C---SSC-EEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEE
T ss_pred             CCCcEEEEEec------------C---CCC-EEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEE
Confidence            4 776554310            0   011 1334444324457788888889999988762221111111223555555


Q ss_pred             ec-CC-eEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEee--C-CeEEEEEcCCeEEEEcCC-CCEEE
Q 006913          236 GN-NG-YLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDS--N-GWISVGSLDGLLYSFSPS-GVLNK  305 (626)
Q Consensus       236 D~-dG-~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~--d-G~IWVGT~~gGLy~~d~~-g~~~~  305 (626)
                      .. ++ .+.+++ .++.+..+|..++........... ..+..+...+  + ..+.+|+.++.|..+|.. ++...
T Consensus       149 ~p~~~~~l~~~~-~dg~v~vwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~  222 (814)
T 3mkq_A          149 NPKDPSTFASGC-LDRTVKVWSLGQSTPNFTLTTGQE-RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA  222 (814)
T ss_dssp             ETTEEEEEEEEE-TTSEEEEEETTCSSCSEEEECCCT-TCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEE
T ss_pred             EcCCCCEEEEEe-CCCeEEEEECCCCcceeEEecCCC-CCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEE
Confidence            54 55 455555 457888888877766554433211 1223344433  3 467888888899999965 54433

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=96.92  E-value=0.3  Score=50.34  Aligned_cols=160  Identities=6%  Similarity=-0.047  Sum_probs=88.3

Q ss_pred             eEEEEEEcCCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEE
Q 006913          131 AGIAVSTSSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELY  209 (626)
Q Consensus       131 I~s~~~d~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~  209 (626)
                      |..+.-..++.|..|+.++-|..+|.+ ++.......  ...+      +   ... ..++...+.+..|..|+.++.|.
T Consensus        85 v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~--~~~~------H---~~~-V~~v~~spdg~~l~sgs~d~~i~  152 (344)
T 4gqb_B           85 VADLTWVGERGILVASDSGAVELWELDENETLIVSKF--CKYE------H---DDI-VSTVSVLSSGTQAVSGSKDICIK  152 (344)
T ss_dssp             EEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEE--EEEC------C---SSC-EEEEEECTTSSEEEEEETTSCEE
T ss_pred             EEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeec--cccC------C---CCC-EEEEEECCCCCEEEEEeCCCeEE
Confidence            333444467788888888888888864 543322100  0000      0   011 23444544244567777888899


Q ss_pred             EEeCCCCeEEEEEcCCCCCcceeeeeecCC-eEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEee-CCe-EE
Q 006913          210 SLSAHSPYFNWIQDLSSFDKAFTLTPGNNG-YLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDS-NGW-IS  286 (626)
Q Consensus       210 ~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG-~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~-dG~-IW  286 (626)
                      .+|.++++...... +....+.++....++ .+++....++.+...|..+++...............++...+ ++. +.
T Consensus       153 iwd~~~~~~~~~~~-~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~  231 (344)
T 4gqb_B          153 VWDLAQQVVLSSYR-AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFV  231 (344)
T ss_dssp             EEETTTTEEEEEEC-CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEE
T ss_pred             EEECCCCcEEEEEc-CcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceE
Confidence            99999987765432 112345566555454 454433245678888988887665432221112234455543 344 55


Q ss_pred             EEEcCCeEEEEcCC-CCE
Q 006913          287 VGSLDGLLYSFSPS-GVL  303 (626)
Q Consensus       287 VGT~~gGLy~~d~~-g~~  303 (626)
                      .|+.++.|..+|.. ++.
T Consensus       232 sg~~dg~v~~wd~~~~~~  249 (344)
T 4gqb_B          232 FGDENGTVSLVDTKSTSC  249 (344)
T ss_dssp             EEETTSEEEEEESCC--C
T ss_pred             EeccCCcEEEEECCCCcE
Confidence            67888889999964 443

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=96.92  E-value=0.44  Score=48.43  Aligned_cols=236  Identities=12%  Similarity=-0.019  Sum_probs=122.0

Q ss_pred             CC-EEEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEe---cCCe-EEEEE-CCeEEEEECCCCccccceeEEEe
Q 006913           47 DG-KIYACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHG---GTGE-VYIVA-ENRVLKVDLLKIGTSESATQVFY  118 (626)
Q Consensus        47 dG-~IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD---~dG~-IwVgT-~ggL~~id~~~~~~~~~~~~~~~  118 (626)
                      ++ .+..++ ++.+..+|. ++.....+....   ....+...   .++. +..++ ++.|..+|..++..     ...+
T Consensus       111 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-----~~~~  182 (408)
T 4a11_B          111 DTGMFTSSSFDKTLKVWDTNTLQTADVFNFEE---TVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC-----SHIL  182 (408)
T ss_dssp             CTTCEEEEETTSEEEEEETTTTEEEEEEECSS---CEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC-----CEEE
T ss_pred             CCcEEEEEeCCCeEEEeeCCCCccceeccCCC---ceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce-----eeee
Confidence            44 355555 667888887 666555444322   11122221   2333 44555 78899999876531     1111


Q ss_pred             cCCCCCCCCCCeeEEEEEEcCCe--EEEEEcCCeEEEEeCC-Cc-EEEEECCcccccccccccccCCCCCccccceEEEc
Q 006913          119 GTGSGKGGTGAIAGIAVSTSSSS--VYINVKGRALFAFMTH-GQ-LLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQ  194 (626)
Q Consensus       119 ~~~~~~~~~~~~I~s~~~d~dG~--LwIgT~~gGL~a~d~~-G~-~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~  194 (626)
                      .     .. ...+..+....++.  +..++.++.|..+|.. +. .......................... ...+...+
T Consensus       183 ~-----~~-~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~  255 (408)
T 4a11_B          183 Q-----GH-RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGK-VNGLCFTS  255 (408)
T ss_dssp             C-----CC-CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSC-EEEEEECT
T ss_pred             c-----CC-CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCc-eeEEEEcC
Confidence            1     11 12344444444443  6677777888889864 33 22221000000000000000000111 23344544


Q ss_pred             CCCeEEEEcCCCeEEEEeCCCCeEEEEEcCC----C-CCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCC
Q 006913          195 CEGSIYISNTQGELYSLSAHSPYFNWIQDLS----S-FDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGP  269 (626)
Q Consensus       195 ~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~----s-~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~  269 (626)
                      .+..|+.++.++.|..+|.++++........    . .........+..+.+.++.. ++.+..+|..+++........ 
T Consensus       256 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~~~-  333 (408)
T 4a11_B          256 DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY-GSTIAVYTVYSGEQITMLKGH-  333 (408)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEE-TTEEEEEETTTCCEEEEECCC-
T ss_pred             CCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEec-CCEEEEEECcCCcceeeeccC-
Confidence            2445778888888999999887643221110    0 11112223344455666653 578989999999887665322 


Q ss_pred             CCCceeeEEEeeCC-eEEEEEcCCeEEEEcCC
Q 006913          270 LGSAEYAPVVDSNG-WISVGSLDGLLYSFSPS  300 (626)
Q Consensus       270 l~~~~sspvvD~dG-~IWVGT~~gGLy~~d~~  300 (626)
                       ...+..+...++| .|..|+.++.|..++..
T Consensus       334 -~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~  364 (408)
T 4a11_B          334 -YKTVDCCVFQSNFQELYSGSRDCNILAWVPS  364 (408)
T ss_dssp             -SSCEEEEEEETTTTEEEEEETTSCEEEEEEC
T ss_pred             -CCeEEEEEEcCCCCEEEEECCCCeEEEEeCC
Confidence             1234556677665 47778888889999864

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=96.89  E-value=0.68  Score=50.17  Aligned_cols=236  Identities=10%  Similarity=0.012  Sum_probs=130.4

Q ss_pred             eeeeEEee--CCEEEE-Ee-CCcEEEEcC-CC--------CEEEEEeCCCCCCcccCeEEecCCeEEEE-EC-----CeE
Q 006913           39 LSKPLIGE--DGKIYA-CS-EKTLFAFES-NG--------TIAWSLDLDFTCNIGTAPVHGGTGEVYIV-AE-----NRV   99 (626)
Q Consensus        39 ~Sspvid~--dG~IwI-gS-dggL~a~d~-~G--------~~~W~~~~~~~~~i~~sp~iD~dG~IwVg-T~-----ggL   99 (626)
                      ........  +|.+.+ |+ ++.+..+|. ++        .....+....  ..+.++....+|...+. +.     +.|
T Consensus        67 v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~~~~~~~v  144 (615)
T 1pgu_A           67 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLA--GPISDISWDFEGRRLCVVGEGRDNFGVF  144 (615)
T ss_dssp             EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCS--SCEEEEEECTTSSEEEEEECCSSCSEEE
T ss_pred             EEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhccc--ccEEEEEEeCCCCEEEEeccCCCCccEE
Confidence            45555556  666544 45 556777776 44        2222222111  23445556677775544 33     345


Q ss_pred             EEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCC--eEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccc
Q 006913          100 LKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSS--SVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQG  176 (626)
Q Consensus       100 ~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG--~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~  176 (626)
                      +.++...       ....+.     .. ...+..+....++  .+..++.++.+..+|.. ++.......          
T Consensus       145 ~~~d~~~-------~~~~~~-----~~-~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~----------  201 (615)
T 1pgu_A          145 ISWDSGN-------SLGEVS-----GH-SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT----------  201 (615)
T ss_dssp             EETTTCC-------EEEECC-----SC-SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS----------
T ss_pred             EEEECCC-------cceeee-----cC-CccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecc----------
Confidence            5555221       111111     11 2234444444555  57777888888999965 665544310          


Q ss_pred             cccCCCCCccccceEEEcC-CCeEEEEcCCCeEEEEeCCCCeEEEEEcC---CCCCcceeeeeecCCe-EEEEEcCCCEE
Q 006913          177 CTKTDVDCYFTSVPVIDQC-EGSIYISNTQGELYSLSAHSPYFNWIQDL---SSFDKAFTLTPGNNGY-LYVTIPVRALV  251 (626)
Q Consensus       177 ~~~~l~~~~i~sspviD~~-dG~LwIGT~~GgL~~ld~~tg~~~w~~~~---~s~~~v~sI~~D~dG~-LwVGT~~gG~l  251 (626)
                        +...... ..++...+. +..|+.++.++.|..+|.++++.......   .....+.++... ++. |+.++ .++.+
T Consensus       202 --~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~-~d~~i  276 (615)
T 1pgu_A          202 --HHKQGSF-VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVG-ADATI  276 (615)
T ss_dssp             --SSCTTCC-EEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEE-TTSEE
T ss_pred             --cCCCCce-EEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEc-CCCcE
Confidence              0000001 233455542 34577788888999999988877655411   222345566665 664 55555 45788


Q ss_pred             EEEECCCCcEEEEEecCC--CCCceeeEEEeeCCeEEEEEcCCeEEEEcCC-CCEE
Q 006913          252 LALDTSSGNILWHKSVGP--LGSAEYAPVVDSNGWISVGSLDGLLYSFSPS-GVLN  304 (626)
Q Consensus       252 ~alD~~tG~~~w~~~~~~--l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~-g~~~  304 (626)
                      ..+|..+++.........  .......+....++.+.+|+.++.|+.++.. ++..
T Consensus       277 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~  332 (615)
T 1pgu_A          277 RVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVL  332 (615)
T ss_dssp             EEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEE
T ss_pred             EEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEE
Confidence            889998888776654431  1112233334457889999999999999975 4433

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=96.88  E-value=0.49  Score=48.98  Aligned_cols=103  Identities=10%  Similarity=0.067  Sum_probs=67.2

Q ss_pred             CeEEEEcCCCeEEEEeCCCCeEEEEEc-CCCCCcceeeeeecCCe-EEEEEcCCCEEEEEECCCCcEEEEEecCCCCCce
Q 006913          197 GSIYISNTQGELYSLSAHSPYFNWIQD-LSSFDKAFTLTPGNNGY-LYVTIPVRALVLALDTSSGNILWHKSVGPLGSAE  274 (626)
Q Consensus       197 G~LwIGT~~GgL~~ld~~tg~~~w~~~-~~s~~~v~sI~~D~dG~-LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~  274 (626)
                      ..|..|+.++.|..+|.++++...... ......+.++....+|. |..+. .++.+..+|..+++..........+...
T Consensus       145 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~  223 (402)
T 2aq5_A          145 NVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC-RDKRVRVIEPRKGTVVAEKDRPHEGTRP  223 (402)
T ss_dssp             TEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE-TTSEEEEEETTTTEEEEEEECSSCSSSC
T ss_pred             CEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe-cCCcEEEEeCCCCceeeeeccCCCCCcc
Confidence            357777888889999999987765542 11223466666666775 55555 5678999999998877655222111223


Q ss_pred             eeEEEeeCCeEEEEE----cCCeEEEEcCC
Q 006913          275 YAPVVDSNGWISVGS----LDGLLYSFSPS  300 (626)
Q Consensus       275 sspvvD~dG~IWVGT----~~gGLy~~d~~  300 (626)
                      ..+...++|.+.+..    .++.|..+|..
T Consensus       224 ~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~  253 (402)
T 2aq5_A          224 VHAVFVSEGKILTTGFSRMSERQVALWDTK  253 (402)
T ss_dssp             CEEEECSTTEEEEEEECTTCCEEEEEEETT
T ss_pred             eEEEEcCCCcEEEEeccCCCCceEEEEcCc
Confidence            445666677766554    67788888864

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=96.85  E-value=0.45  Score=47.45  Aligned_cols=236  Identities=9%  Similarity=-0.058  Sum_probs=127.5

Q ss_pred             eeeeEEeeCCEEEE-Ee-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeE-EEEE-CCeEEEEECCCCccccce
Q 006913           39 LSKPLIGEDGKIYA-CS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEV-YIVA-ENRVLKVDLLKIGTSESA  113 (626)
Q Consensus        39 ~Sspvid~dG~IwI-gS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~I-wVgT-~ggL~~id~~~~~~~~~~  113 (626)
                      .......++|.+.+ ++ ++.+..+|. ++.....+....  ..+.+.....++++ ..|+ ++.|..+|..++..    
T Consensus        16 V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~----   89 (304)
T 2ynn_A           16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTE--TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK----   89 (304)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCS--SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE----
T ss_pred             eEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccC--CcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcE----
Confidence            34444546666544 44 567888887 666554443321  12333444455654 4455 67888889887631    


Q ss_pred             eEEEecCCCCCCCCCCeeEEEEEEcCC-eEEEEEcCCeEEEEeCC-CcEEEE-ECCcccccccccccccCCCCCccccce
Q 006913          114 TQVFYGTGSGKGGTGAIAGIAVSTSSS-SVYINVKGRALFAFMTH-GQLLWS-AGPVLDQLGYRQGCTKTDVDCYFTSVP  190 (626)
Q Consensus       114 ~~~~~~~~~~~~~~~~~I~s~~~d~dG-~LwIgT~~gGL~a~d~~-G~~~w~-~~~~~~~~~~~~~~~~~l~~~~i~ssp  190 (626)
                       ...+.     ... ..|..+....++ .|..|+.++.|..+|.. +..... +.      +      +   ... ..+.
T Consensus        90 -~~~~~-----~h~-~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~------~------h---~~~-v~~v  146 (304)
T 2ynn_A           90 -VVDFE-----AHP-DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE------G------H---EHF-VMCV  146 (304)
T ss_dssp             -EEEEE-----CCS-SCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC------C------C---CSC-EEEE
T ss_pred             -EEEEe-----CCC-CcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhc------c------c---CCc-EEEE
Confidence             22221     111 234444444444 56667778888888864 533221 10      0      0   011 1233


Q ss_pred             EEEcC-CCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceee--eeecCC-eEEEEEcCCCEEEEEECCCCcEEEEEe
Q 006913          191 VIDQC-EGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTL--TPGNNG-YLYVTIPVRALVLALDTSSGNILWHKS  266 (626)
Q Consensus       191 viD~~-dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI--~~D~dG-~LwVGT~~gG~l~alD~~tG~~~w~~~  266 (626)
                      ...+. ...|..|..++.|..+|..++.............+..+  ....++ .|..|+ .++.+...|..+++......
T Consensus       147 ~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s-~D~~i~iWd~~~~~~~~~~~  225 (304)
T 2ynn_A          147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQTKSCVATLE  225 (304)
T ss_dssp             EECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEE-TTSEEEEEETTTTEEEEEEE
T ss_pred             EECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEc-CCCeEEEEeCCCCccceeeC
Confidence            44321 34577788888899999876544333221111122222  223355 455555 45788889988887765543


Q ss_pred             cCCCCCceeeEEEeeCC-eEEEEEcCCeEEEEcCC-CCEEEE
Q 006913          267 VGPLGSAEYAPVVDSNG-WISVGSLDGLLYSFSPS-GVLNKF  306 (626)
Q Consensus       267 ~~~l~~~~sspvvD~dG-~IWVGT~~gGLy~~d~~-g~~~~~  306 (626)
                      ..  ...+......+++ .|..|+.++.|..+|.. ++....
T Consensus       226 ~h--~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~  265 (304)
T 2ynn_A          226 GH--MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT  265 (304)
T ss_dssp             CC--SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             CC--CCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeee
Confidence            22  1234445666665 46667888899999975 555443

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.81  E-value=0.32  Score=51.08  Aligned_cols=230  Identities=11%  Similarity=0.050  Sum_probs=121.6

Q ss_pred             CceeeeeEEeeCCEEEEEe--CCcEEEEcC-CCCEEEEEeCCC---C-CCcccCeEEec----CCeEEEE-E---CCeEE
Q 006913           36 AFRLSKPLIGEDGKIYACS--EKTLFAFES-NGTIAWSLDLDF---T-CNIGTAPVHGG----TGEVYIV-A---ENRVL  100 (626)
Q Consensus        36 ~~~~Sspvid~dG~IwIgS--dggL~a~d~-~G~~~W~~~~~~---~-~~i~~sp~iD~----dG~IwVg-T---~ggL~  100 (626)
                      ...-..+++..+|+||++.  .+.|++++. +|...-...++.   . ..-...+.++.    ++.||+. +   .+.|.
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~  110 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV  110 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence            3344466777899999987  467999987 565421111210   0 01123455654    5889996 2   56898


Q ss_pred             EEECCCC-----ccccceeEEE-ecCCCCCCCCCCeeEEEEEEcCCeEEEEEc--------------CCeEEEEeCCCcE
Q 006913          101 KVDLLKI-----GTSESATQVF-YGTGSGKGGTGAIAGIAVSTSSSSVYINVK--------------GRALFAFMTHGQL  160 (626)
Q Consensus       101 ~id~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~--------------~gGL~a~d~~G~~  160 (626)
                      ++.....     ........+. ....  ..+   ..+.+..+.+|.||+++-              .+.|++++++|++
T Consensus       111 R~~~~~~~~~~~~~~~~~~i~~~~p~~--~~H---~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i  185 (347)
T 3das_A          111 RMLYDEKKPSGEQLGAPDTVFRGIPKG--VIH---NGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP  185 (347)
T ss_dssp             EEEBCTTSCTTCCBCCCEEEEEEECCC--SSC---CCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred             EEEeCCCCcccccCCCcEEEEEcCCCC--CCc---cCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence            8876552     1111111221 1111  111   112345578999999852              3678888887652


Q ss_pred             ----------EEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCC----CeEEEEeCCCCeEEEEEcCC-
Q 006913          161 ----------LWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQ----GELYSLSAHSPYFNWIQDLS-  225 (626)
Q Consensus       161 ----------~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~----GgL~~ld~~tg~~~w~~~~~-  225 (626)
                                +|.+       +.+.           ...+..|. +|.||++...    ..|..+. .++.+-|-...+ 
T Consensus       186 p~~nPf~~~~i~a~-------G~RN-----------p~Gla~dp-~G~L~~~d~g~~~~deln~i~-~G~nyGwP~~~g~  245 (347)
T 3das_A          186 APGNPFPGSPVYSY-------GHRN-----------VQGLAWDD-KQRLFASEFGQDTWDELNAIK-PGDNYGWPEAEGK  245 (347)
T ss_dssp             CTTCSSTTCCEEEB-------CCSB-----------CCEEEECT-TCCEEEEECCSSSCEEEEEEC-TTCBCCTTTCCSS
T ss_pred             cCCCCCCCCeEEee-------CCCC-----------cceEEECC-CCCEEEEecCCCCCceeeEEc-CCCEecCCcccCC
Confidence                      3322       1111           12256676 7999998652    2355553 344443421100 


Q ss_pred             ----CC-----------CcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEE--EEEecCCCCCceeeEEEeeCCeEEEE
Q 006913          226 ----SF-----------DKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNIL--WHKSVGPLGSAEYAPVVDSNGWISVG  288 (626)
Q Consensus       226 ----s~-----------~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~--w~~~~~~l~~~~sspvvD~dG~IWVG  288 (626)
                          ..           .....++. .+|.+|++...+..++.+....+...  ....+.........+.+++||.|||.
T Consensus       246 ~~~~~~~~P~~~~~~~~~ap~G~~~-~~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~  324 (347)
T 3das_A          246 GGGSGFHDPVAQWSTDEASPSGIAY-AEGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLV  324 (347)
T ss_dssp             CCCTTCCCCSEEECTTTCCEEEEEE-ETTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEE
T ss_pred             CCCccccCCcEecCCCCCCCcceEE-EcCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEE
Confidence                00           01112233 36899999876666766654433221  11111111112456788899999999


Q ss_pred             EcC
Q 006913          289 SLD  291 (626)
Q Consensus       289 T~~  291 (626)
                      |.+
T Consensus       325 td~  327 (347)
T 3das_A          325 TSN  327 (347)
T ss_dssp             ECT
T ss_pred             EcC
Confidence            964

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=96.80  E-value=0.32  Score=50.07  Aligned_cols=158  Identities=6%  Similarity=-0.093  Sum_probs=84.5

Q ss_pred             eEEEEEEcCCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEE
Q 006913          131 AGIAVSTSSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELY  209 (626)
Q Consensus       131 I~s~~~d~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~  209 (626)
                      |..+.-..++.+.+++.++.|..+|.. ++.....     .+. ..  .+   ... ..++...+.+..|..|..++.|.
T Consensus        97 V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~-----~~~-~~--~h---~~~-V~~v~~spdg~~l~sgs~dg~v~  164 (357)
T 4g56_B           97 VTDVAWVSEKGILVASDSGAVELWEILEKESLLVN-----KFA-KY--EH---DDI-VKTLSVFSDGTQAVSGGKDFSVK  164 (357)
T ss_dssp             EEEEEEETTTEEEEEETTSCEEEC--------CCC-----CEE-EC--CC---SSC-EEEEEECSSSSEEEEEETTSCEE
T ss_pred             EEEEEEcCCCCEEEEECCCEEEEeeccccceeEEE-----eec-cC--CC---CCC-EEEEEECCCCCEEEEEeCCCeEE
Confidence            444445577888888888778777753 4332110     000 00  00   011 23344444234566777888899


Q ss_pred             EEeCCCCeEEEEEcCCCCCcceeeeeecCC--eEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeC-C-eE
Q 006913          210 SLSAHSPYFNWIQDLSSFDKAFTLTPGNNG--YLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSN-G-WI  285 (626)
Q Consensus       210 ~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG--~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~d-G-~I  285 (626)
                      .+|.++++........ ...+.++....++  .+..+. .++.+...|..+++.............+.++...++ + .+
T Consensus       165 iwd~~~~~~~~~~~~h-~~~v~~v~~s~~~~~~~~s~~-~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~l  242 (357)
T 4g56_B          165 VWDLSQKAVLKSYNAH-SSEVNCVAACPGKDTIFLSCG-EDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTF  242 (357)
T ss_dssp             EEETTTTEEEEEECCC-SSCEEEEEECTTCSSCEEEEE-TTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEE
T ss_pred             EEECCCCcEEEEEcCC-CCCEEEEEEccCCCceeeeec-cCCceEEEECCCCceeeeeeeccccccccchhhhhcccceE
Confidence            9999998876554321 2335555554443  455555 456777788777765432222111122444555433 3 46


Q ss_pred             EEEEcCCeEEEEcCC-CC
Q 006913          286 SVGSLDGLLYSFSPS-GV  302 (626)
Q Consensus       286 WVGT~~gGLy~~d~~-g~  302 (626)
                      ..|+.++.|..+|.. ++
T Consensus       243 a~g~~d~~i~~wd~~~~~  260 (357)
T 4g56_B          243 ACGDETGNVSLVNIKNPD  260 (357)
T ss_dssp             EEEESSSCEEEEESSCGG
T ss_pred             EEeecccceeEEECCCCc
Confidence            678888899999864 44

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=96.78  E-value=0.63  Score=48.09  Aligned_cols=282  Identities=9%  Similarity=-0.021  Sum_probs=142.5

Q ss_pred             eEEeeCCEEE-EEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE--CCeEEEEECCCCccccceeEE
Q 006913           42 PLIGEDGKIY-ACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA--ENRVLKVDLLKIGTSESATQV  116 (626)
Q Consensus        42 pvid~dG~Iw-IgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT--~ggL~~id~~~~~~~~~~~~~  116 (626)
                      .....+|... .|+ ++.+..+|. ++.....+....  ..+.++....+|+..+..  ++.+..++.............
T Consensus        72 ~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~--~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~  149 (380)
T 3iz6_a           72 LDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHC--PWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPV  149 (380)
T ss_dssp             EEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCC--TTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTT
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCC--CCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccc
Confidence            3333556544 455 567888887 666554443321  234455666778765543  677777776542100000000


Q ss_pred             EecCCCCCCCCCCeeEEEEEE-cCCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEc
Q 006913          117 FYGTGSGKGGTGAIAGIAVST-SSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQ  194 (626)
Q Consensus       117 ~~~~~~~~~~~~~~I~s~~~d-~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~  194 (626)
                      .   .......+.+....... .+..|..|+.++.+..+|.. |+.+..+..   .+  ..    .. ...+ .+....+
T Consensus       150 ~---~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~---~~--~~----~h-~~~v-~~~~~~~  215 (380)
T 3iz6_a          150 S---RVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGS---EF--PS----GH-TADV-LSLSINS  215 (380)
T ss_dssp             C---CBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECC---CS--SS----SC-CSCE-EEEEECS
T ss_pred             e---eeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeec---cc--CC----CC-ccCe-EEEEeec
Confidence            0   00001111111111222 23457778888889999974 766544311   00  00    00 0111 2222321


Q ss_pred             -CCCeEEEEcCCCeEEEEeCCCC-eEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCC--
Q 006913          195 -CEGSIYISNTQGELYSLSAHSP-YFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPL--  270 (626)
Q Consensus       195 -~dG~LwIGT~~GgL~~ld~~tg-~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l--  270 (626)
                       .++.+..|+.++.|..+|.+.. ....... +....+.++....+|...+....++.+...|..++.....+.....  
T Consensus       216 ~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~  294 (380)
T 3iz6_a          216 LNANMFISGSCDTTVRLWDLRITSRAVRTYH-GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN  294 (380)
T ss_dssp             SSCCEEEEEETTSCEEEEETTTTCCCCEEEC-CCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSS
T ss_pred             CCCCEEEEEECCCeEEEEECCCCCcceEEEC-CcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccc
Confidence             1345667777888999998632 2222111 1123456666667776555444567888899988887655432210  


Q ss_pred             ---CCceeeEEEeeCC-eEEEEEcCCeEEEEcCC-CCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEEeeecCeeE
Q 006913          271 ---GSAEYAPVVDSNG-WISVGSLDGLLYSFSPS-GVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLMVVGQFS  345 (626)
Q Consensus       271 ---~~~~sspvvD~dG-~IWVGT~~gGLy~~d~~-g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~t~~Ggl~  345 (626)
                         ...+.++...++| .|..|+.++.|+.+|.. ++........ ..   .....|.++....+|... .+++..|.+.
T Consensus       295 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-~~---~h~~~v~~l~~s~dg~~l-~sgs~D~~i~  369 (380)
T 3iz6_a          295 DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTL-QN---SHEGRISCLGLSSDGSAL-CTGSWDKNLK  369 (380)
T ss_dssp             CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCS-CS---SCCCCCCEEEECSSSSEE-EEECTTSCEE
T ss_pred             ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecc-cC---CCCCceEEEEECCCCCEE-EEeeCCCCEE
Confidence               0123456666665 56677788899999964 5544322110 00   122334556666667653 5555444443

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=96.73  E-value=0.74  Score=48.23  Aligned_cols=227  Identities=11%  Similarity=-0.054  Sum_probs=123.6

Q ss_pred             CeEEecCCeEEEE-E-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCC-eEEEEEcCCeEEEEeCC-
Q 006913           82 APVHGGTGEVYIV-A-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSS-SVYINVKGRALFAFMTH-  157 (626)
Q Consensus        82 sp~iD~dG~IwVg-T-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG-~LwIgT~~gGL~a~d~~-  157 (626)
                      ++....++.+.+. + ++.|..+|..++..     ...+.     .... .|..+....++ .|..|+.++-|..+|.. 
T Consensus       113 ~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~-----~~~l~-----~h~~-~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~  181 (410)
T 1vyh_C          113 RVIFHPVFSVMVSASEDATIKVWDYETGDF-----ERTLK-----GHTD-SVQDISFDHSGKLLASCSADMTIKLWDFQG  181 (410)
T ss_dssp             EEEECSSSSEEEEEESSSCEEEEETTTCCC-----CEEEC-----CCSS-CEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCcE-----EEEEe-----ccCC-cEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence            3445566665554 3 67888889877532     11111     1112 34444444444 45566777778888865 


Q ss_pred             CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeec
Q 006913          158 GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGN  237 (626)
Q Consensus       158 G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~  237 (626)
                      ++.+..+.      +      +   ... ..+....+.+..|..|+.++.|..+|.+++........ ....+..+....
T Consensus       182 ~~~~~~~~------~------h---~~~-V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~-h~~~v~~~~~~~  244 (410)
T 1vyh_C          182 FECIRTMH------G------H---DHN-VSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG-HREWVRMVRPNQ  244 (410)
T ss_dssp             SCEEECCC------C------C---SSC-EEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECT
T ss_pred             CceeEEEc------C------C---CCC-EEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeC-CCccEEEEEECC
Confidence            55433210      0      0   011 23344443245677788899999999998876543221 122355566666


Q ss_pred             CCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEee---------------------CCeEEEEEcCCeEEE
Q 006913          238 NGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDS---------------------NGWISVGSLDGLLYS  296 (626)
Q Consensus       238 dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~---------------------dG~IWVGT~~gGLy~  296 (626)
                      +|.+.+....++.+...|..++.........  ...+.++...+                     ...+..|+.++.|..
T Consensus       245 ~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~i  322 (410)
T 1vyh_C          245 DGTLIASCSNDQTVRVWVVATKECKAELREH--RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM  322 (410)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCEEEEECCC--SSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCceeeEecCC--CceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEE
Confidence            7765544434567878888887765443221  11233333332                     235788888999999


Q ss_pred             EcCC-CCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEEeeecCeeEEe
Q 006913          297 FSPS-GVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLMVVGQFSSL  347 (626)
Q Consensus       297 ~d~~-g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~t~~Ggl~~~  347 (626)
                      +|.. ++......        .....|.++....+|... .++...|.+..+
T Consensus       323 wd~~~~~~~~~~~--------~h~~~v~~v~~~~~g~~l-~s~s~D~~i~vw  365 (410)
T 1vyh_C          323 WDVSTGMCLMTLV--------GHDNWVRGVLFHSGGKFI-LSCADDKTLRVW  365 (410)
T ss_dssp             EETTTTEEEEEEE--------CCSSCEEEEEECSSSSCE-EEEETTTEEEEE
T ss_pred             EECCCCceEEEEE--------CCCCcEEEEEEcCCCCEE-EEEeCCCeEEEE
Confidence            9975 55443222        012235556555666543 444444545443

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=96.72  E-value=0.51  Score=52.18  Aligned_cols=191  Identities=7%  Similarity=-0.075  Sum_probs=115.5

Q ss_pred             EecCCeEEEEE--CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcC-CeEEEEEcCCeEEEEeC--C-C
Q 006913           85 HGGTGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSS-SSVYINVKGRALFAFMT--H-G  158 (626)
Q Consensus        85 iD~dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~d-G~LwIgT~~gGL~a~d~--~-G  158 (626)
                      .+.++.+|+..  ++.|..+|..++..     ...+..       +..+..+....+ ..||+++.++.|..+|.  . +
T Consensus       145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~-----~~~i~~-------g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~  212 (543)
T 1nir_A          145 LDLPNLFSVTLRDAGQIALVDGDSKKI-----VKVIDT-------GYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEP  212 (543)
T ss_dssp             CCGGGEEEEEEGGGTEEEEEETTTCCE-----EEEEEC-------STTEEEEEECTTSCEEEEEETTSEEEEEETTSSSC
T ss_pred             cCCCCEEEEEEcCCCeEEEEECCCceE-----EEEEec-------CcccceEEECCCCCEEEEECCCCeEEEEECcCCCC
Confidence            45678888876  67899999887642     112211       111344444444 46899988888999998  4 6


Q ss_pred             cEEEEECCcccccccccccccCCCCCccccceEEEc----CCCeEEEEcC-CCeEEEEeCCCCeEEEEEcCCC-------
Q 006913          159 QLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQ----CEGSIYISNT-QGELYSLSAHSPYFNWIQDLSS-------  226 (626)
Q Consensus       159 ~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~----~dG~LwIGT~-~GgL~~ld~~tg~~~w~~~~~s-------  226 (626)
                      +.+....         .       +.. ...+.+.+    .+..||++++ ++.|..+|..+++........+       
T Consensus       213 ~~~~~i~---------~-------g~~-p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~  275 (543)
T 1nir_A          213 TKVAEIK---------I-------GIE-ARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQT  275 (543)
T ss_dssp             EEEEEEE---------C-------CSE-EEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCC
T ss_pred             cEEEEEe---------c-------CCC-cceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccc
Confidence            5544320         0       001 12344543    3677999985 6889999999988766544311       


Q ss_pred             ---CCcceeeeeecCC-eEEEEEcCCCEEEEEECCCCcEEE--EEecCCCCCceeeEEEeeCCe-EEEEEc-CCeEEEEc
Q 006913          227 ---FDKAFTLTPGNNG-YLYVTIPVRALVLALDTSSGNILW--HKSVGPLGSAEYAPVVDSNGW-ISVGSL-DGLLYSFS  298 (626)
Q Consensus       227 ---~~~v~sI~~D~dG-~LwVGT~~gG~l~alD~~tG~~~w--~~~~~~l~~~~sspvvD~dG~-IWVGT~-~gGLy~~d  298 (626)
                         ...+..++...++ .+++.....+.+..+|..+++.+.  ....+   .......++++|+ ++++.. ++.|..+|
T Consensus       276 ~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~---~~~~~~~~spdg~~l~va~~~~~~v~v~D  352 (543)
T 1nir_A          276 YHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAA---PFLHDGGWDSSHRYFMTAANNSNKVAVID  352 (543)
T ss_dssp             EESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECC---SSCCCEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred             cccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccC---cCccCceECCCCCEEEEEecCCCeEEEEE
Confidence               1134456666555 555555555788888877665332  22222   2334567788887 676654 67899999


Q ss_pred             CC-CCEEEEe
Q 006913          299 PS-GVLNKFS  307 (626)
Q Consensus       299 ~~-g~~~~~~  307 (626)
                      .. ++.....
T Consensus       353 ~~tg~l~~~i  362 (543)
T 1nir_A          353 SKDRRLSALV  362 (543)
T ss_dssp             TTTTEEEEEE
T ss_pred             CCCCeEEEee
Confidence            75 6655443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=96.70  E-value=0.75  Score=49.56  Aligned_cols=250  Identities=11%  Similarity=0.057  Sum_probs=133.5

Q ss_pred             CCEEEEEeC------CcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCe-EEEEE-----------CCeEEEEECCCC
Q 006913           47 DGKIYACSE------KTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGE-VYIVA-----------ENRVLKVDLLKI  107 (626)
Q Consensus        47 dG~IwIgSd------ggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~-IwVgT-----------~ggL~~id~~~~  107 (626)
                      ...+|+...      +.+..+|. +++.+..++.+..   - .+.++.+|+ +|++.           ++.|..||..++
T Consensus        84 ~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~---P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           84 ARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFL---P-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             TTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSS---C-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCC---C-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            357999873      57999998 8888887776532   2 566777776 88874           246999999886


Q ss_pred             ccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEc--CCeEEEEeCC-CcEEEEECCc----ccccc---ccccc
Q 006913          108 GTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVK--GRALFAFMTH-GQLLWSAGPV----LDQLG---YRQGC  177 (626)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~--~gGL~a~d~~-G~~~w~~~~~----~~~~~---~~~~~  177 (626)
                      +.   ...+..+...............+...+..+|++..  .+.|..+|.. ++++..+.-.    ....+   +-..|
T Consensus       160 ~v---v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~  236 (426)
T 3c75_H          160 LP---IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNC  236 (426)
T ss_dssp             CE---EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEE
T ss_pred             cE---EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEc
Confidence            42   01122220000000001112222234457888764  3668899974 6665443100    00000   00000


Q ss_pred             ccC------CC---------------CCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEc--C--C-C--C--
Q 006913          178 TKT------DV---------------DCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQD--L--S-S--F--  227 (626)
Q Consensus       178 ~~~------l~---------------~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~--~--~-s--~--  227 (626)
                      ..+      ..               ...+...+.+...++.+|+.+..+.++.+|..++.......  .  . .  .  
T Consensus       237 ~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~  316 (426)
T 3c75_H          237 RDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDW  316 (426)
T ss_dssp             TTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTE
T ss_pred             CCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccccc
Confidence            000      00               00000011223224667887777889999887655432111  0  0 0  0  


Q ss_pred             --CcceeeeeecC-CeEEEEEcC---------CCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCe--EEEEEc-CC
Q 006913          228 --DKAFTLTPGNN-GYLYVTIPV---------RALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGW--ISVGSL-DG  292 (626)
Q Consensus       228 --~~v~sI~~D~d-G~LwVGT~~---------gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~--IWVGT~-~g  292 (626)
                        .....++.+.+ +++||....         .+.+..+|..+++.+-....+.   ....+.++++|.  +|+... ++
T Consensus       317 ~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~---~P~gia~spDg~~~lyv~n~~s~  393 (426)
T 3c75_H          317 RPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH---EIDSINVSQDAEPLLYALSAGTQ  393 (426)
T ss_dssp             EECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE---EECEEEECCSSSCEEEEEETTTT
T ss_pred             ccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC---CcCeEEEccCCCEEEEEEcCCCC
Confidence              00112445555 589998531         2468899999999876654431   234467777776  666553 68


Q ss_pred             eEEEEcCC-CCEEEE
Q 006913          293 LLYSFSPS-GVLNKF  306 (626)
Q Consensus       293 GLy~~d~~-g~~~~~  306 (626)
                      .|..+|.. +++...
T Consensus       394 ~VsVID~~t~kvv~t  408 (426)
T 3c75_H          394 TLHIYDAATGEELRS  408 (426)
T ss_dssp             EEEEEETTTCCEEEE
T ss_pred             eEEEEECCCCCEEEE
Confidence            99999974 666544

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=96.63  E-value=0.88  Score=47.81  Aligned_cols=239  Identities=10%  Similarity=-0.001  Sum_probs=131.9

Q ss_pred             eeEEeeCCEEEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEe--cCCe-EEEEE-CCeEEEEECCCCccccce-
Q 006913           41 KPLIGEDGKIYACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHG--GTGE-VYIVA-ENRVLKVDLLKIGTSESA-  113 (626)
Q Consensus        41 spvid~dG~IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD--~dG~-IwVgT-~ggL~~id~~~~~~~~~~-  113 (626)
                      ......++.+..|+ ++.+..+|. +++....+....  ..+.++...  .++. +..++ ++.|..+|..+....... 
T Consensus       167 ~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~--~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  244 (464)
T 3v7d_B          167 ALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHN--STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHG  244 (464)
T ss_dssp             EEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC----
T ss_pred             EEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCC--CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccccccc
Confidence            33444566666666 667888887 676654443211  122233332  3555 44445 788888887664310000 


Q ss_pred             -----eEEEecCCC-------CCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccC
Q 006913          114 -----TQVFYGTGS-------GKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKT  180 (626)
Q Consensus       114 -----~~~~~~~~~-------~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~  180 (626)
                           ......+..       .... ...+..+ ...+..+..++.++.|..+|.. ++.+.....            + 
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~------------~-  309 (464)
T 3v7d_B          245 EEHDYPLVFHTPEENPYFVGVLRGH-MASVRTV-SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG------------H-  309 (464)
T ss_dssp             --CCSSEEESCGGGCTTEEEEECCC-SSCEEEE-EEETTEEEEEETTSCEEEEETTTTEEEEEECC------------C-
T ss_pred             ccCCcceEeeccCCCeEEEEEccCc-cceEEEE-cCCCCEEEEEeCCCeEEEEECCCCcEEEEecC------------C-
Confidence                 000000000       0001 1122222 3346678888888889999974 766554311            0 


Q ss_pred             CCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCc
Q 006913          181 DVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGN  260 (626)
Q Consensus       181 l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~  260 (626)
                        ... ..+....+.+..|..|+.++.|..+|.++++........ ...+.++..+ +..|..++ .++.+..+|..++.
T Consensus       310 --~~~-v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~-~~~l~s~s-~dg~v~vwd~~~~~  383 (464)
T 3v7d_B          310 --TDR-IYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH-TALVGLLRLS-DKFLVSAA-ADGSIRGWDANDYS  383 (464)
T ss_dssp             --SSC-EEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEEC-SSEEEEEE-TTSEEEEEETTTCC
T ss_pred             --CCC-EEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-CCcEEEEEEc-CCEEEEEe-CCCcEEEEECCCCc
Confidence              011 233455542456788888899999999988876554321 2235555554 45677766 45788889988887


Q ss_pred             EEEEEecCCCCCceeeEEEeeCCeEEEEEcCCeEEEEcCC-CCEEE
Q 006913          261 ILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPS-GVLNK  305 (626)
Q Consensus       261 ~~w~~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~-g~~~~  305 (626)
                      .........   .........++.+.+.+.++.|..+|.. ++...
T Consensus       384 ~~~~~~~~~---~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~  426 (464)
T 3v7d_B          384 RKFSYHHTN---LSAITTFYVSDNILVSGSENQFNIYNLRSGKLVH  426 (464)
T ss_dssp             EEEEEECTT---CCCEEEEEECSSEEEEEETTEEEEEETTTCCEEE
T ss_pred             eeeeecCCC---CccEEEEEeCCCEEEEecCCeEEEEECCCCcEEe
Confidence            766554332   1222344445655554448899999964 66554

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=96.62  E-value=0.67  Score=46.27  Aligned_cols=238  Identities=7%  Similarity=-0.084  Sum_probs=116.4

Q ss_pred             CEEE-EEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEec-CCeEE-EEE-CCeEEEEECCCCccccceeEEEecCC
Q 006913           48 GKIY-ACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGG-TGEVY-IVA-ENRVLKVDLLKIGTSESATQVFYGTG  121 (626)
Q Consensus        48 G~Iw-IgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~-dG~Iw-VgT-~ggL~~id~~~~~~~~~~~~~~~~~~  121 (626)
                      |.+. .|+ ++.+..+|. +++....+....  ..+.++.... ++.+. .++ ++.|..+|..++.     ....+...
T Consensus        85 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~  157 (366)
T 3k26_A           85 HPLLAVAGSRGIIRIINPITMQCIKHYVGHG--NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT-----LVAIFGGV  157 (366)
T ss_dssp             CEEEEEEETTCEEEEECTTTCCEEEEEESCC--SCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE-----EEEEECST
T ss_pred             CCEEEEecCCCEEEEEEchhceEeeeecCCC--CcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe-----EEEEeccc
Confidence            4444 455 567889997 777765554221  2344555555 56544 455 6889999987753     12222110


Q ss_pred             CCCCCCCCeeEEEEEEcC-CeEEEEEcCCeEEEEeCC-CcEEEEEC------Cccccccc-------ccccccCCCCCcc
Q 006913          122 SGKGGTGAIAGIAVSTSS-SSVYINVKGRALFAFMTH-GQLLWSAG------PVLDQLGY-------RQGCTKTDVDCYF  186 (626)
Q Consensus       122 ~~~~~~~~~I~s~~~d~d-G~LwIgT~~gGL~a~d~~-G~~~w~~~------~~~~~~~~-------~~~~~~~l~~~~i  186 (626)
                        ... ...+..+....+ ..|..++.++.|..+|.. ++......      +.......       ............ 
T Consensus       158 --~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  233 (366)
T 3k26_A          158 --EGH-RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNY-  233 (366)
T ss_dssp             --TSC-SSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSC-
T ss_pred             --ccc-cCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcce-
Confidence              011 223444444444 456677777888888865 43211000      00000000       000000000111 


Q ss_pred             ccceEEEcCCCeEEEEcCCCeEEEEeCCCCeE--------------EEEEcCCCCCcceeeeeecC--CeEEEEEcCCCE
Q 006913          187 TSVPVIDQCEGSIYISNTQGELYSLSAHSPYF--------------NWIQDLSSFDKAFTLTPGNN--GYLYVTIPVRAL  250 (626)
Q Consensus       187 ~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~--------------~w~~~~~s~~~v~sI~~D~d--G~LwVGT~~gG~  250 (626)
                      ..++...  ++.|..++.++.|..+|..++..              ....... ...+.++....+  |.+.+....++.
T Consensus       234 v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~~l~~~~~dg~  310 (366)
T 3k26_A          234 VDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS-QCDIWYMRFSMDFWQKMLALGNQVGK  310 (366)
T ss_dssp             CCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS-SCCSSCCCCEECTTSSEEEEECTTSC
T ss_pred             EEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc-CCcEEEEEEcCCCCCcEEEEEecCCc
Confidence            1233344  56788888888899998876532              1111110 112333333334  654443334578


Q ss_pred             EEEEECCCCcE----EEEEecCCCCCceeeEEEeeCCe-EEEEEcCCeEEEEcC
Q 006913          251 VLALDTSSGNI----LWHKSVGPLGSAEYAPVVDSNGW-ISVGSLDGLLYSFSP  299 (626)
Q Consensus       251 l~alD~~tG~~----~w~~~~~~l~~~~sspvvD~dG~-IWVGT~~gGLy~~d~  299 (626)
                      +..+|..+++.    ............+..+...++|. |..|+.++.|+.+|.
T Consensus       311 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  364 (366)
T 3k26_A          311 LYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR  364 (366)
T ss_dssp             EEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             EEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence            88888877652    11221110012345566666654 556777777777763

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=96.58  E-value=0.68  Score=45.85  Aligned_cols=217  Identities=11%  Similarity=-0.051  Sum_probs=114.3

Q ss_pred             eeEEeeCCEEEE-Ee-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEE-EE-CCeEEEEECCCCccccceeE
Q 006913           41 KPLIGEDGKIYA-CS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYI-VA-ENRVLKVDLLKIGTSESATQ  115 (626)
Q Consensus        41 spvid~dG~IwI-gS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwV-gT-~ggL~~id~~~~~~~~~~~~  115 (626)
                      ......+|.+.+ |+ ++.+..+|. +++....+....  ..+.++....++++.+ +. ++.|..+|..++..     .
T Consensus        70 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----~  142 (312)
T 4ery_A           70 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC-----L  142 (312)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE-----E
T ss_pred             EEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE-----E
Confidence            344445665444 55 567888887 676654433221  2233444556666554 44 78899999877531     1


Q ss_pred             EEecCCCCCCCCCCeeEEEEEEcCC-eEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEE
Q 006913          116 VFYGTGSGKGGTGAIAGIAVSTSSS-SVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVID  193 (626)
Q Consensus       116 ~~~~~~~~~~~~~~~I~s~~~d~dG-~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD  193 (626)
                      ..+..     . ...+..+....++ .|..++.++-|..+|.. ++.......       .    .   ... ...+...
T Consensus       143 ~~~~~-----~-~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-------~----~---~~~-~~~~~~~  201 (312)
T 4ery_A          143 KTLPA-----H-SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-------D----D---NPP-VSFVKFS  201 (312)
T ss_dssp             EEECC-----C-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC-------S----S---CCC-EEEEEEC
T ss_pred             EEecC-----C-CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEec-------c----C---CCc-eEEEEEC
Confidence            22211     1 1234444444454 46667777888899974 665443200       0    0   001 1223444


Q ss_pred             cCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCC--CCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCC
Q 006913          194 QCEGSIYISNTQGELYSLSAHSPYFNWIQDLSS--FDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLG  271 (626)
Q Consensus       194 ~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s--~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~  271 (626)
                      +.+..|..++.++.|..+|..+++.........  ...+.......++.+.+....++.+..+|..+++........  .
T Consensus       202 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h--~  279 (312)
T 4ery_A          202 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH--T  279 (312)
T ss_dssp             TTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCC--S
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhcc--C
Confidence            424557778888999999999887665433211  111111122234544443334567888898888776544322  1


Q ss_pred             CceeeEEEeeCCeEEE
Q 006913          272 SAEYAPVVDSNGWISV  287 (626)
Q Consensus       272 ~~~sspvvD~dG~IWV  287 (626)
                      ..+.++...+++.+.+
T Consensus       280 ~~v~~~~~~p~~~~l~  295 (312)
T 4ery_A          280 DVVISTACHPTENIIA  295 (312)
T ss_dssp             SCEEEEEECSSSSEEE
T ss_pred             CcEEEEeecCcCCceE
Confidence            2234455555554443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.56  E-value=0.028  Score=64.59  Aligned_cols=197  Identities=10%  Similarity=0.073  Sum_probs=108.3

Q ss_pred             eeeeEEee-CCEEEEEe--CCcEEEEcCCC----CEEEEEeCCCCCCcccCeEEe-cCCeEEEEE--CCeEEEEECCCCc
Q 006913           39 LSKPLIGE-DGKIYACS--EKTLFAFESNG----TIAWSLDLDFTCNIGTAPVHG-GTGEVYIVA--ENRVLKVDLLKIG  108 (626)
Q Consensus        39 ~Sspvid~-dG~IwIgS--dggL~a~d~~G----~~~W~~~~~~~~~i~~sp~iD-~dG~IwVgT--~ggL~~id~~~~~  108 (626)
                      ...+.++. ++.||+..  .+.|++++.++    ... .............+++| ..++||++.  .+.|.++++++..
T Consensus       408 p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~-~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~  486 (699)
T 1n7d_A          408 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY-DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK  486 (699)
T ss_dssp             CCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCC-CCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC
T ss_pred             eEEEccccccCeEEEEecCCCeEEEEecCCCCCCcce-EEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc
Confidence            33455653 67888875  45788888754    111 01011000112356666 467899875  5789999887642


Q ss_pred             cccceeEEEecCCCCCCCCCCeeEEEEEE-cCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccccccccccCCCCCc
Q 006913          109 TSESATQVFYGTGSGKGGTGAIAGIAVST-SSSSVYINVKG--RALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCY  185 (626)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~I~s~~~d-~dG~LwIgT~~--gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~  185 (626)
                           .........     ....+ +..+ .+|.||+....  +.|++++++|...-....            ..+   .
T Consensus       487 -----~~~l~~~~~-----~~P~g-iavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~------------~~l---~  540 (699)
T 1n7d_A          487 -----RKTLFREQG-----SKPRA-IVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT------------ENI---Q  540 (699)
T ss_dssp             -----EEEECCCSS-----CCCCC-EECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESC------------SSC---S
T ss_pred             -----eEEEEeCCC-----CCcce-EEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEe------------CCC---C
Confidence                 122211100     01112 2334 46788887543  568888877643221100            000   0


Q ss_pred             cccceEEEcCCCeEEEEcC-CCeEEEEeCCCCeEEEEEcCC-CCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEE
Q 006913          186 FTSVPVIDQCEGSIYISNT-QGELYSLSAHSPYFNWIQDLS-SFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILW  263 (626)
Q Consensus       186 i~sspviD~~dG~LwIGT~-~GgL~~ld~~tg~~~w~~~~~-s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w  263 (626)
                      ....+++|..+++||++.. .+.|.+++.++.......... .......++++.+ +||+.....+.|..+++.+|+...
T Consensus       541 ~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~  619 (699)
T 1n7d_A          541 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVN  619 (699)
T ss_dssp             SCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEE
T ss_pred             CccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceE
Confidence            1234677743688998865 457999998875443332211 1223445667754 777776666789999987887654

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=96.53  E-value=0.95  Score=46.97  Aligned_cols=236  Identities=12%  Similarity=0.015  Sum_probs=125.8

Q ss_pred             eeeEEeeCCEEEEE-eCCcEEEEcC-CCCEEEEEeCCCC----------------CCcccCeEEecCCeEEE-EE-CCeE
Q 006913           40 SKPLIGEDGKIYAC-SEKTLFAFES-NGTIAWSLDLDFT----------------CNIGTAPVHGGTGEVYI-VA-ENRV   99 (626)
Q Consensus        40 Sspvid~dG~IwIg-SdggL~a~d~-~G~~~W~~~~~~~----------------~~i~~sp~iD~dG~IwV-gT-~ggL   99 (626)
                      .......+|.+++. +++.+..++. +|.....+.....                ...+.++....+|+..+ |. ++.|
T Consensus        68 ~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i  147 (393)
T 1erj_A           68 CCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLI  147 (393)
T ss_dssp             CEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCE
T ss_pred             EEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeE
Confidence            34444467766554 4667778886 7776543322100                00133455666777554 44 6788


Q ss_pred             EEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEE-cCCeEEEEEcCCeEEEEeCC-CcEEEEECCccccccccccc
Q 006913          100 LKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVST-SSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGC  177 (626)
Q Consensus       100 ~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d-~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~  177 (626)
                      ..+|..++..     ...+.     .... .|..+... .+..|..++.++-+..+|.. ++.......       .   
T Consensus       148 ~iwd~~~~~~-----~~~~~-----~h~~-~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-------~---  206 (393)
T 1erj_A          148 RIWDIENRKI-----VMILQ-----GHEQ-DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI-------E---  206 (393)
T ss_dssp             EEEETTTTEE-----EEEEC-----CCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-------S---
T ss_pred             EEEECCCCcE-----EEEEc-----cCCC-CEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEc-------C---
Confidence            8889877531     11121     1112 33433333 34457777778888888974 665443200       0   


Q ss_pred             ccCCCCCccccceEEEc-CCCeEEEEcCCCeEEEEeCCCCeEEEEEcC------CCCCcceeeeeecCCeEEEEEcCCCE
Q 006913          178 TKTDVDCYFTSVPVIDQ-CEGSIYISNTQGELYSLSAHSPYFNWIQDL------SSFDKAFTLTPGNNGYLYVTIPVRAL  250 (626)
Q Consensus       178 ~~~l~~~~i~sspviD~-~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~------~s~~~v~sI~~D~dG~LwVGT~~gG~  250 (626)
                            ..+ ......+ .+..|..|+.++.|..+|.+++........      +....+.++....+|.+.+....++.
T Consensus       207 ------~~v-~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~  279 (393)
T 1erj_A          207 ------DGV-TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS  279 (393)
T ss_dssp             ------SCE-EEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             ------CCc-EEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence                  011 2233322 134567788888999999998876543321      11234666777777754443334567


Q ss_pred             EEEEECCCCcEEE------------EEecCCCCCceeeEEEeeCC-eEEEEEcCCeEEEEcCC-CCEEE
Q 006913          251 VLALDTSSGNILW------------HKSVGPLGSAEYAPVVDSNG-WISVGSLDGLLYSFSPS-GVLNK  305 (626)
Q Consensus       251 l~alD~~tG~~~w------------~~~~~~l~~~~sspvvD~dG-~IWVGT~~gGLy~~d~~-g~~~~  305 (626)
                      +...|..++....            .....  ...+.++...+++ .|..|+.++.|+.+|.. ++...
T Consensus       280 v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~  346 (393)
T 1erj_A          280 VKLWNLQNANNKSDSKTPNSGTCEVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL  346 (393)
T ss_dssp             EEEEEC---------------CEEEEEECC--SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEE
T ss_pred             EEEEECCCCCCcccccCCCCCcceEEEecc--cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEE
Confidence            7777765543211            11100  1123445555454 57778888999999975 55443

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=96.53  E-value=1.5  Score=49.23  Aligned_cols=195  Identities=12%  Similarity=0.050  Sum_probs=115.5

Q ss_pred             ccCeEEecCCeEEEE-E-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcC-CeEEEEEcCCeEEEEeC
Q 006913           80 GTAPVHGGTGEVYIV-A-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSS-SSVYINVKGRALFAFMT  156 (626)
Q Consensus        80 ~~sp~iD~dG~IwVg-T-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~d-G~LwIgT~~gGL~a~d~  156 (626)
                      +.++....+|++.+. + ++.|...|..++..     ...+.     .+.. .|..+....+ ..|..++.++.|..+|.
T Consensus       433 v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~-----~~~~~-----~h~~-~v~~~~~s~~~~~l~s~s~D~~i~iwd~  501 (694)
T 3dm0_A          433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVS-----TRRFV-----GHTK-DVLSVAFSLDNRQIVSASRDRTIKLWNT  501 (694)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEE-----EEEEE-----CCSS-CEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEECCCCcc-----eeEEe-----CCCC-CEEEEEEeCCCCEEEEEeCCCEEEEEEC
Confidence            445566677776554 4 78888889877531     11111     1112 3344433344 45777788888888887


Q ss_pred             CCcEEEEECCcccccccccccccCCCCCccccceEEEcC--CCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeee
Q 006913          157 HGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQC--EGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLT  234 (626)
Q Consensus       157 ~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~--dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~  234 (626)
                      .+........        ....+   ... ..+....+.  ...|..|+.++.|..+|.++++...... +....+.++.
T Consensus       502 ~~~~~~~~~~--------~~~~h---~~~-v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~-~h~~~v~~v~  568 (694)
T 3dm0_A          502 LGECKYTISE--------GGEGH---RDW-VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA-GHTGYVSTVA  568 (694)
T ss_dssp             TSCEEEEECS--------STTSC---SSC-EEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEE
T ss_pred             CCCcceeecc--------CCCCC---CCc-EEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEc-CCCCCEEEEE
Confidence            6554443211        00000   011 122333320  1357778888999999998877654322 1123466777


Q ss_pred             eecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEEEEEcCCeEEEEcCCC
Q 006913          235 PGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPSG  301 (626)
Q Consensus       235 ~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~g  301 (626)
                      ...+|++.+....++.+...|..+++.+......   ..+.++...+++.+.+++.+++|..+|...
T Consensus       569 ~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~  632 (694)
T 3dm0_A          569 VSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN---SVIHALCFSPNRYWLCAATEHGIKIWDLES  632 (694)
T ss_dssp             ECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS---SCEEEEEECSSSSEEEEEETTEEEEEETTT
T ss_pred             EeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC---CcEEEEEEcCCCcEEEEEcCCCEEEEECCC
Confidence            7778865554435578888898888876543322   235557777788888877788999999753

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=96.53  E-value=0.24  Score=50.97  Aligned_cols=244  Identities=8%  Similarity=-0.024  Sum_probs=122.2

Q ss_pred             eeeeEEeeCCEE-EEEe-CCcEEEEcC-C---C-CEEEEEeCCCCCCcccCeEEecC-CeEE-EEE-CCeEEEEECCCCc
Q 006913           39 LSKPLIGEDGKI-YACS-EKTLFAFES-N---G-TIAWSLDLDFTCNIGTAPVHGGT-GEVY-IVA-ENRVLKVDLLKIG  108 (626)
Q Consensus        39 ~Sspvid~dG~I-wIgS-dggL~a~d~-~---G-~~~W~~~~~~~~~i~~sp~iD~d-G~Iw-VgT-~ggL~~id~~~~~  108 (626)
                      ...+....+|.+ ..|+ ++.+..++. +   + .....+. .. ...+.++....+ ++++ .++ ++.|..+|..+..
T Consensus        70 v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~-~h-~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  147 (416)
T 2pm9_A           70 FNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFS-NH-SSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCT  147 (416)
T ss_dssp             EEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECC-CS-SSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTS
T ss_pred             eEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhcc-CC-ccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCc
Confidence            344444456654 4455 567888887 3   2 2332222 11 123444555554 5544 444 6788888887652


Q ss_pred             cccceeEEEecCCCCCCCCCCeeEEEEEEcC--CeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCc
Q 006913          109 TSESATQVFYGTGSGKGGTGAIAGIAVSTSS--SSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCY  185 (626)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~d--G~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~  185 (626)
                      ........ ........... .+..+....+  ..|..++.++.|..+|.. ++.......       ..  ........
T Consensus       148 ~~~~~~~~-~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-------~~--~~~~~~~~  216 (416)
T 2pm9_A          148 ESPSNYTP-LTPGQSMSSVD-EVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSY-------TS--PNSGIKQQ  216 (416)
T ss_dssp             SCTTTCCC-BCCCCSCCSSC-CCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECC-------CC--CSSCCCCC
T ss_pred             cccccccc-cccccccCCCC-CeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEec-------cc--cccccCCc
Confidence            00000000 00000011112 2333333333  345566677779999975 665544311       00  00000011


Q ss_pred             cccceEEEcCCC--eEEEEcCCC---eEEEEeCCCCe-EEEEEcCCCCCcceeeeeec-CCe-EEEEEcCCCEEEEEECC
Q 006913          186 FTSVPVIDQCEG--SIYISNTQG---ELYSLSAHSPY-FNWIQDLSSFDKAFTLTPGN-NGY-LYVTIPVRALVLALDTS  257 (626)
Q Consensus       186 i~sspviD~~dG--~LwIGT~~G---gL~~ld~~tg~-~~w~~~~~s~~~v~sI~~D~-dG~-LwVGT~~gG~l~alD~~  257 (626)
                       ..++...+ ++  .|..++.++   .|..+|.+++. ............+.++.... ++. |..++ .++.+..+|..
T Consensus       217 -v~~~~~~~-~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~-~dg~v~~wd~~  293 (416)
T 2pm9_A          217 -LSVVEWHP-KNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSG-RDNTVLLWNPE  293 (416)
T ss_dssp             -EEEEEECS-SCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEE-SSSEEEEECSS
T ss_pred             -eEEEEECC-CCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEe-CCCCEEEeeCC
Confidence             23344543 33  466777676   78999988752 21111101122355566554 554 55555 45788889988


Q ss_pred             CCcEEEEEecCCCCCceeeEEEeeCC--eEEEEEcCCeEEEEcCC
Q 006913          258 SGNILWHKSVGPLGSAEYAPVVDSNG--WISVGSLDGLLYSFSPS  300 (626)
Q Consensus       258 tG~~~w~~~~~~l~~~~sspvvD~dG--~IWVGT~~gGLy~~d~~  300 (626)
                      +++.........  ..+..+...+++  .+..++.++.|..++..
T Consensus       294 ~~~~~~~~~~~~--~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~  336 (416)
T 2pm9_A          294 SAEQLSQFPARG--NWCFKTKFAPEAPDLFACASFDNKIEVQTLQ  336 (416)
T ss_dssp             SCCEEEEEECSS--SCCCCEEECTTCTTEEEECCSSSEEEEEESC
T ss_pred             CCccceeecCCC--CceEEEEECCCCCCEEEEEecCCcEEEEEcc
Confidence            888776543321  223446666665  56667777888888753

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=96.51  E-value=1.1  Score=47.36  Aligned_cols=196  Identities=8%  Similarity=-0.088  Sum_probs=103.5

Q ss_pred             ccCeEEecCCeEE-EEE--CCeEEEEECC--CCccccceeEEEecCCCCCCCCCCeeEEEEEEcC-CeEEEEEcCCeEEE
Q 006913           80 GTAPVHGGTGEVY-IVA--ENRVLKVDLL--KIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSS-SSVYINVKGRALFA  153 (626)
Q Consensus        80 ~~sp~iD~dG~Iw-VgT--~ggL~~id~~--~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~d-G~LwIgT~~gGL~a  153 (626)
                      +.++....+|... +.+  ++.|..++..  ++..    .......    .. ...+..+....+ ..|+.++.++.++.
T Consensus       105 v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~----~~~~~~~----~~-~~~v~~~~~sp~~~~l~~~~~~g~v~~  175 (450)
T 2vdu_B          105 IRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV----LKLRKRF----CF-SKRPNAISIAEDDTTVIIADKFGDVYS  175 (450)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC----EEEEEEE----EC-SSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             eEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce----eeeeecc----cC-CCCceEEEEcCCCCEEEEEeCCCcEEE
Confidence            3445566777764 333  6778888876  4421    1111000    00 122333333444 45777777777888


Q ss_pred             EeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCC---C-eEEEEcCCCeEEEEeCCCCeEEEEEcCCCCC
Q 006913          154 FMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCE---G-SIYISNTQGELYSLSAHSPYFNWIQDLSSFD  228 (626)
Q Consensus       154 ~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~d---G-~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~  228 (626)
                      ++.. ++.....   ...+  .   .+   ... ..++...+ +   + .|..|+.++.|..+|.++++.......+...
T Consensus       176 ~~~~~~~~~~~~---~~~~--~---~h---~~~-v~~~~~sp-~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~  242 (450)
T 2vdu_B          176 IDINSIPEEKFT---QEPI--L---GH---VSM-LTDVHLIK-DSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH  242 (450)
T ss_dssp             EETTSCCCSSCC---CCCS--E---EC---SSC-EEEEEEEE-CTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS
T ss_pred             EecCCccccccc---ceee--e---cc---cCc-eEEEEEcC-CCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC
Confidence            8853 4321000   0000  0   00   011 23344554 4   5 4666777888999998887655432212223


Q ss_pred             cceeeeeecCC-eEEEEEcCCCEEEEEECCCCcEEEEEecC-----------------------CCCCceeeEEEeeCC-
Q 006913          229 KAFTLTPGNNG-YLYVTIPVRALVLALDTSSGNILWHKSVG-----------------------PLGSAEYAPVVDSNG-  283 (626)
Q Consensus       229 ~v~sI~~D~dG-~LwVGT~~gG~l~alD~~tG~~~w~~~~~-----------------------~l~~~~sspvvD~dG-  283 (626)
                      .+.++... +| .|+.++ ..+.+..+|..+|+........                       .....+..+...+++ 
T Consensus       243 ~v~~~~~s-d~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~  320 (450)
T 2vdu_B          243 FVSSICCG-KDYLLLSAG-GDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP  320 (450)
T ss_dssp             CEEEEEEC-STTEEEEEE-SSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSS
T ss_pred             ceEEEEEC-CCCEEEEEe-CCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCC
Confidence            45666666 66 455555 4578989999999876554321                       000123345555555 


Q ss_pred             eEEEEE-cCCeEEEEcC
Q 006913          284 WISVGS-LDGLLYSFSP  299 (626)
Q Consensus       284 ~IWVGT-~~gGLy~~d~  299 (626)
                      .|++++ .++.|..++.
T Consensus       321 ~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          321 FVAFFVEATKCIIILEM  337 (450)
T ss_dssp             EEEEEETTCSEEEEEEE
T ss_pred             EEEEEECCCCeEEEEEe
Confidence            566777 6777877775

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=96.49  E-value=0.79  Score=45.52  Aligned_cols=191  Identities=7%  Similarity=-0.062  Sum_probs=102.0

Q ss_pred             ccCeEEecCCe-EEEEE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEE-cCC-eEEEEEcCCeEEEEe
Q 006913           80 GTAPVHGGTGE-VYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVST-SSS-SVYINVKGRALFAFM  155 (626)
Q Consensus        80 ~~sp~iD~dG~-IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d-~dG-~LwIgT~~gGL~a~d  155 (626)
                      +.++....++. |+.++ ++.|..++..++..... ......      ... .+..+... .+. .|+.++.++.|..++
T Consensus        14 v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~-~~~~~~------~~~-~v~~~~~~~~~~~~l~~~~~dg~i~~wd   85 (342)
T 1yfq_A           14 ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD-LLQSLR------YKH-PLLCCNFIDNTDLQIYVGTVQGEILKVD   85 (342)
T ss_dssp             EEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEE-EEEEEE------CSS-CEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred             EEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcccc-ceeeee------cCC-ceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence            33444555555 44455 67787777665421000 111111      112 33443333 444 588888888899999


Q ss_pred             C-C-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCC---------CeEEEEEcC
Q 006913          156 T-H-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHS---------PYFNWIQDL  224 (626)
Q Consensus       156 ~-~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~t---------g~~~w~~~~  224 (626)
                      . . ++. ....      +    ..+   ...+ ..+...+ ++.|+.++.++.|..+|.++         ++...... 
T Consensus        86 ~~~~~~~-~~~~------~----~~~---~~~v-~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-  148 (342)
T 1yfq_A           86 LIGSPSF-QALT------N----NEA---NLGI-CRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-  148 (342)
T ss_dssp             SSSSSSE-EECB------S----CCC---CSCE-EEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-
T ss_pred             eccCCce-Eecc------c----cCC---CCce-EEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-
Confidence            8 6 443 2210      0    000   0112 3445554 67788888888898888765         32211111 


Q ss_pred             CCCCcceeeeeecCCeEEEEEcCCCEEEEEECCC-CcEEEE-EecCCCCCceeeEEEee-C-CeEEEEEcCCeEEEEcC
Q 006913          225 SSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSS-GNILWH-KSVGPLGSAEYAPVVDS-N-GWISVGSLDGLLYSFSP  299 (626)
Q Consensus       225 ~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~t-G~~~w~-~~~~~l~~~~sspvvD~-d-G~IWVGT~~gGLy~~d~  299 (626)
                       ....+.++....++ +++++. ++.+..+|..+ +..... .... ....+.++...+ + ..+.+|+.++.+..++.
T Consensus       149 -~~~~v~~~~~~~~~-l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~  223 (342)
T 1yfq_A          149 -VKNKIFTMDTNSSR-LIVGMN-NSQVQWFRLPLCEDDNGTIEESG-LKYQIRDVALLPKEQEGYACSSIDGRVAVEFF  223 (342)
T ss_dssp             -SCCCEEEEEECSSE-EEEEES-TTEEEEEESSCCTTCCCEEEECS-CSSCEEEEEECSGGGCEEEEEETTSEEEEEEC
T ss_pred             -eCCceEEEEecCCc-EEEEeC-CCeEEEEECCccccccceeeecC-CCCceeEEEECCCCCCEEEEEecCCcEEEEEE
Confidence             12235566666555 888874 57888889877 543211 1111 112345566665 4 46777888887777654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.47  E-value=0.023  Score=65.29  Aligned_cols=230  Identities=11%  Similarity=0.026  Sum_probs=119.1

Q ss_pred             CEEEEEeCCcEEEEcCCC-CEEEEEeCCCCCCcccCeEEec-CCeEEEEE--CCeEEEEECCCCccccceeEEEecCCCC
Q 006913           48 GKIYACSEKTLFAFESNG-TIAWSLDLDFTCNIGTAPVHGG-TGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGSG  123 (626)
Q Consensus        48 G~IwIgSdggL~a~d~~G-~~~W~~~~~~~~~i~~sp~iD~-dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~~  123 (626)
                      ..|++.....|..++..+ ....  .... ......+.+|. .+.||++.  .+.|+++++.+...... .......   
T Consensus       378 ~~ll~~~~~~I~~id~~~~~~~~--~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~-~~~~i~~---  450 (699)
T 1n7d_A          378 AYLFFTNRHEVRKMTLDRSEYTS--LIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS-YDTVISR---  450 (699)
T ss_dssp             CCBCCCCTTC-CEECTTSCCEEC--CSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CC-CCCBCCS---
T ss_pred             eeEEecCccceEEEeCCCCccee--eecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcc-eEEEEeC---
Confidence            445555556777887743 3321  1111 11233566664 67888875  57899998875100000 0000000   


Q ss_pred             CCCCCCeeEEEEEE-cCCeEEEEEc-CCeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEE
Q 006913          124 KGGTGAIAGIAVST-SSSSVYINVK-GRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYI  201 (626)
Q Consensus       124 ~~~~~~~I~s~~~d-~dG~LwIgT~-~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwI  201 (626)
                        ......+ +..+ .+++||+... .+.|..++++|..+-....        .    .+   .....+++|..++.||+
T Consensus       451 --~~~~P~g-lavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~--------~----~~---~~P~giavDp~~g~ly~  512 (699)
T 1n7d_A          451 --DIQAPDG-LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR--------E----QG---SKPRAIVVDPVHGFMYW  512 (699)
T ss_dssp             --CC--CCC-EECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECC--------C----SS---CCCCCEECCSSSSCCEE
T ss_pred             --CCCCcce-EEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEe--------C----CC---CCcceEEEccCCCcEEE
Confidence              0011112 2334 5788988743 4678899988654332200        0    00   00133566644688888


Q ss_pred             EcCC--CeEEEEeCCCCeEEEEEcCCCCCcceeeeeec-CCeEEEEEcCCCEEEEEECCCCcEEEEEecC-CCCCceeeE
Q 006913          202 SNTQ--GELYSLSAHSPYFNWIQDLSSFDKAFTLTPGN-NGYLYVTIPVRALVLALDTSSGNILWHKSVG-PLGSAEYAP  277 (626)
Q Consensus       202 GT~~--GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~-dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~-~l~~~~ssp  277 (626)
                      ....  +.|++++.++........ ........|++|. +++||++......|..++............. .+ .....+
T Consensus       513 td~~~~~~I~~~~~dG~~~~~l~~-~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~-~~P~gl  590 (699)
T 1n7d_A          513 TDWGTPAKIKKGGLNGVDIYSLVT-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRL-AHPFSL  590 (699)
T ss_dssp             CCCSSSCCEEBCCSSSCCCCEESC-SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSC-SSCCCC
T ss_pred             cccCCCCeEEEEeCCCCCeeEEEe-CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcC-CCceEe
Confidence            7652  578888877643322211 1122344677874 5799999876678888886433222111111 11 112345


Q ss_pred             EEeeCCeEEEEE-cCCeEEEEcC-CCCEEE
Q 006913          278 VVDSNGWISVGS-LDGLLYSFSP-SGVLNK  305 (626)
Q Consensus       278 vvD~dG~IWVGT-~~gGLy~~d~-~g~~~~  305 (626)
                      .++.+ .||+.. ..+.|.++++ +|+...
T Consensus       591 avd~~-~lywtd~~~~~V~~~d~~~G~~~~  619 (699)
T 1n7d_A          591 AVFED-KVFWTDIINEAIFSANRLTGSDVN  619 (699)
T ss_dssp             EEETT-EEEEECSTTTCEEEEETTTEEEEE
T ss_pred             EEECC-EEEEEeCCCCeEEEEEccCCCceE
Confidence            66744 566554 4568999987 465443

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=96.44  E-value=0.89  Score=45.59  Aligned_cols=235  Identities=9%  Similarity=0.011  Sum_probs=117.0

Q ss_pred             eeeeEEeeCCEEEE-Ee-CCcEEEEcC-CCC--EEEEEeCCCCCCcccCeEEecC--CeE-EEEE-CCeEEEEECCCCcc
Q 006913           39 LSKPLIGEDGKIYA-CS-EKTLFAFES-NGT--IAWSLDLDFTCNIGTAPVHGGT--GEV-YIVA-ENRVLKVDLLKIGT  109 (626)
Q Consensus        39 ~Sspvid~dG~IwI-gS-dggL~a~d~-~G~--~~W~~~~~~~~~i~~sp~iD~d--G~I-wVgT-~ggL~~id~~~~~~  109 (626)
                      ........+|.+.+ |+ ++.+..++. .+.  ....+. .. ...+.++....+  +++ ..++ ++.|..+|..++..
T Consensus        14 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~h-~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~   91 (379)
T 3jrp_A           14 IHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT-GH-EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW   91 (379)
T ss_dssp             EEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC-CC-SSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEE
T ss_pred             EEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEec-CC-CCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCce
Confidence            34444545665444 54 566777775 332  222221 11 122334444333  554 4455 67788888776521


Q ss_pred             ccceeEEEecCCCCCCCCCCeeEEEEEE-c--CCeEEEEEcCCeEEEEeCC-Cc--EEEEECCcccccccccccccCCCC
Q 006913          110 SESATQVFYGTGSGKGGTGAIAGIAVST-S--SSSVYINVKGRALFAFMTH-GQ--LLWSAGPVLDQLGYRQGCTKTDVD  183 (626)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~I~s~~~d-~--dG~LwIgT~~gGL~a~d~~-G~--~~w~~~~~~~~~~~~~~~~~~l~~  183 (626)
                        . ....+.     .. ...+..+... .  +..|..++.++.|..+|.. +.  .......            +.   
T Consensus        92 --~-~~~~~~-----~~-~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~------------~~---  147 (379)
T 3jrp_A           92 --S-QIAVHA-----VH-SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA------------HA---  147 (379)
T ss_dssp             --E-EEEEEC-----CC-SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEEC------------CT---
T ss_pred             --e-Eeeeec-----CC-CcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecC------------CC---
Confidence              0 011111     11 1233333333 3  4567778888888888864 32  1111100            00   


Q ss_pred             CccccceEEEc-------------CCCeEEEEcCCCeEEEEeCCCCeEEEE--EcCCC-CCcceeeeeecC---CeEEEE
Q 006913          184 CYFTSVPVIDQ-------------CEGSIYISNTQGELYSLSAHSPYFNWI--QDLSS-FDKAFTLTPGNN---GYLYVT  244 (626)
Q Consensus       184 ~~i~sspviD~-------------~dG~LwIGT~~GgL~~ld~~tg~~~w~--~~~~s-~~~v~sI~~D~d---G~LwVG  244 (626)
                      ..+ .++...+             .+..|..|+.++.|..+|.+++...+.  ..... ...+.++....+   +.+.+.
T Consensus       148 ~~v-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s  226 (379)
T 3jrp_A          148 IGV-NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS  226 (379)
T ss_dssp             TCE-EEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred             Cce-EEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEE
Confidence            001 1222221             145677888888899998876653332  11111 234566666666   554444


Q ss_pred             EcCCCEEEEEECCCCcEEEE---EecCCCCCceeeEEEeeCCe-EEEEEcCCeEEEEcCC
Q 006913          245 IPVRALVLALDTSSGNILWH---KSVGPLGSAEYAPVVDSNGW-ISVGSLDGLLYSFSPS  300 (626)
Q Consensus       245 T~~gG~l~alD~~tG~~~w~---~~~~~l~~~~sspvvD~dG~-IWVGT~~gGLy~~d~~  300 (626)
                      ...++.+..+|..++...+.   .........+.++...++|. |.+++.++.|+.++..
T Consensus       227 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          227 VSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  286 (379)
T ss_dssp             EETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred             EeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence            43456777777666642211   11111122345566766664 6677888888888753

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=96.44  E-value=0.27  Score=49.08  Aligned_cols=186  Identities=8%  Similarity=-0.050  Sum_probs=91.4

Q ss_pred             CEEEEEe-CCcEEEEcC-CCC-EEEEEeCCCCCCcccCeE------EecCCe-EEEEE-CCeEEEEECCCCccccceeEE
Q 006913           48 GKIYACS-EKTLFAFES-NGT-IAWSLDLDFTCNIGTAPV------HGGTGE-VYIVA-ENRVLKVDLLKIGTSESATQV  116 (626)
Q Consensus        48 G~IwIgS-dggL~a~d~-~G~-~~W~~~~~~~~~i~~sp~------iD~dG~-IwVgT-~ggL~~id~~~~~~~~~~~~~  116 (626)
                      ..|+.|+ ++.+..+|. ++. ....+....  ..+.++.      ...+++ +..++ ++.|..+|..++..    ...
T Consensus        81 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~----~~~  154 (357)
T 3i2n_A           81 RYLATGDFGGNLHIWNLEAPEMPVYSVKGHK--EIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD----PVA  154 (357)
T ss_dssp             CCEEEEETTSCEEEECTTSCSSCSEEECCCS--SCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS----CSE
T ss_pred             ceEEEecCCCeEEEEeCCCCCccEEEEEecc--cceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC----cce
Confidence            3455555 567888886 454 333332111  1122221      124555 44445 67888888876521    011


Q ss_pred             EecCCCCCCCCCCeeEEEE----E-EcCCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccce
Q 006913          117 FYGTGSGKGGTGAIAGIAV----S-TSSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVP  190 (626)
Q Consensus       117 ~~~~~~~~~~~~~~I~s~~----~-d~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~ssp  190 (626)
                      .+...  .......+..+.    . ..+..|..++.++.|..+|.. ++..+....       .         .. ..++
T Consensus       155 ~~~~~--~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-------~---------~~-v~~~  215 (357)
T 3i2n_A          155 NMEPV--QGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNI-------K---------NG-VCSL  215 (357)
T ss_dssp             EECCC--TTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEEC-------S---------SC-EEEE
T ss_pred             ecccc--CCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCC-------C---------Cc-eEEE
Confidence            11111  011111233322    1 334456677777889999975 665443200       0         11 1233


Q ss_pred             EEEc---CCCeEEEEcCCCeEEEEeCCCCeEEEEEc----CCCCCcceeeeeecCCe--EEEEEcCCCEEEEEECCCC
Q 006913          191 VIDQ---CEGSIYISNTQGELYSLSAHSPYFNWIQD----LSSFDKAFTLTPGNNGY--LYVTIPVRALVLALDTSSG  259 (626)
Q Consensus       191 viD~---~dG~LwIGT~~GgL~~ld~~tg~~~w~~~----~~s~~~v~sI~~D~dG~--LwVGT~~gG~l~alD~~tG  259 (626)
                      ...+   .++.|++|+.+|.|..+|.++++......    ......+.++....+|.  +..+. .++.+..+|..++
T Consensus       216 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~  292 (357)
T 3i2n_A          216 EFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAG-GAGGLHLWKYEYP  292 (357)
T ss_dssp             EESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEE-TTSEEEEEEEECC
T ss_pred             EcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEe-CCCcEEEeecCCC
Confidence            4432   26778888888989988876643221111    01123456666666775  44444 4567666665443

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=96.43  E-value=0.96  Score=45.87  Aligned_cols=114  Identities=16%  Similarity=0.213  Sum_probs=65.0

Q ss_pred             ceEEEcCCC-eEEEEc-CCCeEEEEeCCCCeEEEEEcCC----CCCcceeeeeecCCe-EEEEEcC-CCEEEE--EECCC
Q 006913          189 VPVIDQCEG-SIYISN-TQGELYSLSAHSPYFNWIQDLS----SFDKAFTLTPGNNGY-LYVTIPV-RALVLA--LDTSS  258 (626)
Q Consensus       189 spviD~~dG-~LwIGT-~~GgL~~ld~~tg~~~w~~~~~----s~~~v~sI~~D~dG~-LwVGT~~-gG~l~a--lD~~t  258 (626)
                      .+.+++ +| .||++. .++.|..++.+++.+.......    .......++.+.||+ ||++... .+.+..  ++..+
T Consensus       215 ~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~  293 (361)
T 3scy_A          215 HLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETN  293 (361)
T ss_dssp             EEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTT
T ss_pred             EEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCC
Confidence            355665 55 588877 4677888888877665443221    112244677777885 7777644 345544  44456


Q ss_pred             CcEEEEEecCCCCCceeeEEEeeCCe-EEEEEc-CCeEEE--EcCC-CCEE
Q 006913          259 GNILWHKSVGPLGSAEYAPVVDSNGW-ISVGSL-DGLLYS--FSPS-GVLN  304 (626)
Q Consensus       259 G~~~w~~~~~~l~~~~sspvvD~dG~-IWVGT~-~gGLy~--~d~~-g~~~  304 (626)
                      |+......... +.....+.++++|. ||++.. ++.+..  +|.. |+..
T Consensus       294 g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~  343 (361)
T 3scy_A          294 GTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLT  343 (361)
T ss_dssp             CCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             CcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEe
Confidence            76533221111 12234567777875 888874 455544  5653 5544

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.41  E-value=1.2  Score=50.09  Aligned_cols=186  Identities=13%  Similarity=0.077  Sum_probs=109.1

Q ss_pred             CCEEEEEe--CCcEEEEcCCCCEEEEEeCCCCCCcccCeEEec-CCeEEEEE--CCeEEEEECCCCccccceeEEEecCC
Q 006913           47 DGKIYACS--EKTLFAFESNGTIAWSLDLDFTCNIGTAPVHGG-TGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTG  121 (626)
Q Consensus        47 dG~IwIgS--dggL~a~d~~G~~~W~~~~~~~~~i~~sp~iD~-dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~  121 (626)
                      +|.||+..  .+.+++++.+|...-.+.... ......+.+|. .++||++.  .+.|.+++.++..     ....... 
T Consensus       360 ~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~-~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~-----~~~l~~~-  432 (619)
T 3s94_A          360 EGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQ-IAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM-----RKILISE-  432 (619)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEECSS-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-----CEEEECT-
T ss_pred             CCeEEEEeCCCCeEEEEEcCCCccEEEEECC-CCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe-----EEEEEEC-
Confidence            68899886  467899988653211111111 01233567884 78899986  5788888887642     1222211 


Q ss_pred             CCCCCCCCeeEEEEEE-cCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCe
Q 006913          122 SGKGGTGAIAGIAVST-SSSSVYINVKG--RALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGS  198 (626)
Q Consensus       122 ~~~~~~~~~I~s~~~d-~dG~LwIgT~~--gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~  198 (626)
                          ..... ..++.+ ..|.||+...+  ..|...+.+|...-....  ..+.             ....+++|..+++
T Consensus       433 ----~l~~P-~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~--~~l~-------------~P~GlalD~~~~~  492 (619)
T 3s94_A          433 ----DLEEP-RAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVN--TSLG-------------WPNGLALDYDEGK  492 (619)
T ss_dssp             ----TCCSE-EEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC--SSCS-------------CEEEEEEETTTTE
T ss_pred             ----CCCCe-eeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEe--CCCC-------------CCeeeEEcccCCE
Confidence                11122 334455 46999998753  568888887653222100  0000             1133677844789


Q ss_pred             EEEEcC-CCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcE
Q 006913          199 IYISNT-QGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNI  261 (626)
Q Consensus       199 LwIGT~-~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~  261 (626)
                      ||++.. .+.|.+++.++....-... ........++++ ++.||+.......+..+|+.+|+.
T Consensus       493 LY~aD~~~~~I~~~~~dG~~~~~~~~-~~l~~P~glav~-~~~ly~tD~~~~~I~~~~k~~g~~  554 (619)
T 3s94_A          493 IYWGDAKTDKIEVMNTDGTGRRVLVE-DKIPHIFGFTLL-GDYVYWTDWQRRSIERVHKRSAER  554 (619)
T ss_dssp             EEEEETTTTEEEEEESSSCCCEEEEE-CCCCSSCCEEEE-TTEEEEECTTSSCEEEEESSSCCE
T ss_pred             EEEEECCCCEEEEEecCCCceEEEec-cCCCCcEEEEEE-CCEEEEeecCCCeEEEEEcCCCce
Confidence            998865 4678999987754432222 122234556666 459999877667888889888743

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.38  E-value=1.9  Score=48.72  Aligned_cols=221  Identities=12%  Similarity=0.006  Sum_probs=126.7

Q ss_pred             EEEEEeCCcEEEEcCCC-CEEEEEeCCCCCCcccCeEEec-CCeEEEEE--CCeEEEEECCCCccccceeEEEecCCCCC
Q 006913           49 KIYACSEKTLFAFESNG-TIAWSLDLDFTCNIGTAPVHGG-TGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGSGK  124 (626)
Q Consensus        49 ~IwIgSdggL~a~d~~G-~~~W~~~~~~~~~i~~sp~iD~-dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~~~  124 (626)
                      -|.+.....|.+++.++ ......+.... .....+..|. ++.||++.  .+.|+++++++..     ........   
T Consensus         8 ~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~-~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~-----~~~v~~~g---   78 (628)
T 4a0p_A            8 FLLFSRRADIRRISLETNNNNVAIPLTGV-KEASALDFDVTDNRIYWTDISLKTISRAFMNGSA-----LEHVVEFG---   78 (628)
T ss_dssp             EEEEEETTEEEEEESSCTTCEEECCCCSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-----CEEEECSS---
T ss_pred             EEEEEeCCcEEEEECCCCCcceEEEcCCC-CceEEEEEECCCCEEEEEECCCCeEEEEECCCCC-----cEEEEeCC---
Confidence            34445556677777633 22212222110 1122344553 68899886  6889999987642     12222111   


Q ss_pred             CCCCCeeEEEEEE-cCCeEEEEEcC-CeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEE
Q 006913          125 GGTGAIAGIAVST-SSSSVYINVKG-RALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYIS  202 (626)
Q Consensus       125 ~~~~~~I~s~~~d-~dG~LwIgT~~-gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIG  202 (626)
                        .....+ +..| .+++||++... +.|..++.+|...-...        .    ..+.   -...+++|+.+|.||+.
T Consensus        79 --~~~P~G-lAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~--------~----~~l~---~P~~iavdp~~G~lY~t  140 (628)
T 4a0p_A           79 --LDYPEG-MAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLV--------W----KDLD---SPRALALDPAEGFMYWT  140 (628)
T ss_dssp             --CSCCCE-EEEETTTTEEEEEETTTTEEEEEETTSTTCEEEE--------C----SSCC---CEEEEEEETTTTEEEEE
T ss_pred             --CCCcce-EEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEE--------e----CCCC---CcccEEEccCCCeEEEe
Confidence              011223 3344 67899887653 66888888765322110        0    0000   12446788557999998


Q ss_pred             cC--CCeEEEEeCCCCeEEEEEcCCCCCcceeeeeec-CCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEE
Q 006913          203 NT--QGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGN-NGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVV  279 (626)
Q Consensus       203 T~--~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~-dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvv  279 (626)
                      .+  .+.|++++.++....-...  .......++.|. +++||++......+..+|...+... ... ..+ .....+.+
T Consensus       141 D~g~~~~I~r~~~dG~~~~~l~~--~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~-v~~-~~l-~~P~glav  215 (628)
T 4a0p_A          141 EWGGKPKIDRAAMDGSERTTLVP--NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNRE-VIA-DDL-PHPFGLTQ  215 (628)
T ss_dssp             ECSSSCEEEEEETTSCSCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEE-ECC-SCEEEEEE
T ss_pred             CCCCCCEEEEEeCCCCceEEEEC--CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceE-Eee-ccC-CCceEEEE
Confidence            75  4689999988765433322  233456788886 5799999877778988986543332 111 111 12345677


Q ss_pred             eeCCeEEEEEc-CCeEEEEcC-CCC
Q 006913          280 DSNGWISVGSL-DGLLYSFSP-SGV  302 (626)
Q Consensus       280 D~dG~IWVGT~-~gGLy~~d~-~g~  302 (626)
                      + +++||+... ++.|+++|+ +|+
T Consensus       216 ~-~~~ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          216 Y-QDYIYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             E-TTEEEEEETTTTEEEEEETTTCC
T ss_pred             E-CCEEEEecCCCCEEEEEECCCCC
Confidence            7 578998875 678999996 454

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=96.38  E-value=0.97  Score=45.40  Aligned_cols=233  Identities=9%  Similarity=0.001  Sum_probs=128.2

Q ss_pred             ccCeEEecCCeEEEE-E-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCC-eEEEEEcCCeEEEEeC
Q 006913           80 GTAPVHGGTGEVYIV-A-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSS-SVYINVKGRALFAFMT  156 (626)
Q Consensus        80 ~~sp~iD~dG~IwVg-T-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG-~LwIgT~~gGL~a~d~  156 (626)
                      +.++....+|...+. . ++.|...|..++..     ...+.     .... .+..+....++ .|..++.++-+..+|.
T Consensus        68 v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~-----~~~~~-----~h~~-~v~~~~~~~~~~~l~s~s~D~~i~vwd~  136 (319)
T 3frx_A           68 VQDCTLTADGAYALSASWDKTLRLWDVATGET-----YQRFV-----GHKS-DVMSVDIDKKASMIISGSRDKTIKVWTI  136 (319)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEE-----EEEEE-----CCSS-CEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEECCCCCe-----eEEEc-----cCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            344555667775554 4 78888899887631     11111     1112 34444444444 4666777788888888


Q ss_pred             CCcEEEEECCcccccccccccccCCCCCccccceEE------EcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcc
Q 006913          157 HGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVI------DQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKA  230 (626)
Q Consensus       157 ~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspvi------D~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v  230 (626)
                      +++.+.....            +.   ..+ .....      +.....|..+..++.|..+|.++++...... +....+
T Consensus       137 ~~~~~~~~~~------------h~---~~v-~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~h~~~v  199 (319)
T 3frx_A          137 KGQCLATLLG------------HN---DWV-SQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI-GHNSNI  199 (319)
T ss_dssp             TSCEEEEECC------------CS---SCE-EEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEEC-CCCSCE
T ss_pred             CCCeEEEEec------------cC---CcE-EEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeec-CCCCcE
Confidence            7665443210            00   001 11111      1113357777788889999998876544322 112346


Q ss_pred             eeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEEEEEcCCeEEEEcCCCCEE-EEeec
Q 006913          231 FTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPSGVLN-KFSKS  309 (626)
Q Consensus       231 ~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~g~~~-~~~~~  309 (626)
                      .++....+|.+.+....++.+...|..+++........   ..+.++...+++.+.++..++++..++.+.... .....
T Consensus       200 ~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~  276 (319)
T 3frx_A          200 NTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ---DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRP  276 (319)
T ss_dssp             EEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC---SCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECC
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC---CcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCc
Confidence            66777777865544435678888999888877655433   234557777788777666677888887654322 22211


Q ss_pred             cCCCCccccCceEEEEEEecCCcEEEEEeeecCee
Q 006913          310 DTSDSVIQSSPYWFHLLGPSIGLKAILCLMVVGQF  344 (626)
Q Consensus       310 ~~~~~~ilssp~V~~Il~DsdG~IwI~T~t~~Ggl  344 (626)
                      ..........+.+.++....+|... .++...|.+
T Consensus       277 ~~~~~~~~~~~~v~~~~~spdg~~l-~sg~~Dg~i  310 (319)
T 3frx_A          277 EFAGYSKAAEPHAVSLAWSADGQTL-FAGYTDNVI  310 (319)
T ss_dssp             CCTTCCGGGCCCEEEEEECTTSSEE-EEEETTSCE
T ss_pred             cccccccCcCcceeEEEECCCCCEE-EEeecCceE
Confidence            1111101123445566666777754 444444444

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=96.31  E-value=1  Score=45.02  Aligned_cols=201  Identities=11%  Similarity=0.109  Sum_probs=114.2

Q ss_pred             ccCeEEec-CCeEEEEE--CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcC-CeEEEEe
Q 006913           80 GTAPVHGG-TGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKG-RALFAFM  155 (626)
Q Consensus        80 ~~sp~iD~-dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~-gGL~a~d  155 (626)
                      .+.+..+. .+.||+.+  ++.|+.+|+.+ +     +.......    . ..-...+....++.+|+.... +.|+.++
T Consensus        29 lSGla~~~~~~~L~aV~d~~~~I~~ld~~g-~-----v~~~i~l~----g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~   97 (255)
T 3qqz_A           29 ISSLTWSAQSNTLFSTINKPAAIVEMTTNG-D-----LIRTIPLD----F-VKDLETIEYIGDNQFVISDERDYAIYVIS   97 (255)
T ss_dssp             EEEEEEETTTTEEEEEEETTEEEEEEETTC-C-----EEEEEECS----S-CSSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred             cceeEEeCCCCEEEEEECCCCeEEEEeCCC-C-----EEEEEecC----C-CCChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence            45566665 46799877  57899999984 2     12121111    0 012334455678888888644 6788777


Q ss_pred             C--CCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCC--CeEEEEeC--CCCeEEEEEc--C--C
Q 006913          156 T--HGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQ--GELYSLSA--HSPYFNWIQD--L--S  225 (626)
Q Consensus       156 ~--~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~--GgL~~ld~--~tg~~~w~~~--~--~  225 (626)
                      .  ++. ++....  ..++... ...+   ..+ -.+++|+.+++||++...  ..||.++.  .+..+.-..+  .  .
T Consensus        98 v~~~~~-i~~~~~--~~~~~~~-~~~N---~g~-EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~  169 (255)
T 3qqz_A           98 LTPNSE-VKILKK--IKIPLQE-SPTN---CGF-EGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQ  169 (255)
T ss_dssp             ECTTCC-EEEEEE--EECCCSS-CCCS---SCC-EEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHT
T ss_pred             cCCCCe-eeeeee--ecccccc-cccc---CCc-ceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccc
Confidence            4  354 232100  0111000 0111   111 346777645689998753  26888872  2222222111  0  0


Q ss_pred             -CCCcceeeeee-cCCeEEEEEcCCCEEEEEECCCCcEEEEEecCC----CC---CceeeEEEeeCCeEEEEEcCCeEEE
Q 006913          226 -SFDKAFTLTPG-NNGYLYVTIPVRALVLALDTSSGNILWHKSVGP----LG---SAEYAPVVDSNGWISVGSLDGLLYS  296 (626)
Q Consensus       226 -s~~~v~sI~~D-~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~----l~---~~~sspvvD~dG~IWVGT~~gGLy~  296 (626)
                       ......+++.| ..|++||-+.....++.+|. +|+++-...+.+    +.   ...-.++.|.+|+|||.+..+-+|+
T Consensus       170 ~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~-~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~  248 (255)
T 3qqz_A          170 FTLDDVSGAEFNQQKNTLLVLSHESRALQEVTL-VGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYR  248 (255)
T ss_dssp             CCSSCCCEEEEETTTTEEEEEETTTTEEEEECT-TCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEE
T ss_pred             cccCCceeEEEcCCCCeEEEEECCCCeEEEEcC-CCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEE
Confidence             11223456666 46799999987789999995 577665544432    10   1234578899999999999889999


Q ss_pred             EcCC
Q 006913          297 FSPS  300 (626)
Q Consensus       297 ~d~~  300 (626)
                      |.+.
T Consensus       249 f~~~  252 (255)
T 3qqz_A          249 FTPQ  252 (255)
T ss_dssp             EEC-
T ss_pred             EEec
Confidence            9764

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=96.31  E-value=1.6  Score=47.18  Aligned_cols=239  Identities=9%  Similarity=-0.055  Sum_probs=130.1

Q ss_pred             eeeeEEeeCCE-EEEEeCCcEEEEcC-CC----CEEEEEeCCCCCCc-ccCeEEec--CCeEEE-EE-CCeEEEEECCCC
Q 006913           39 LSKPLIGEDGK-IYACSEKTLFAFES-NG----TIAWSLDLDFTCNI-GTAPVHGG--TGEVYI-VA-ENRVLKVDLLKI  107 (626)
Q Consensus        39 ~Sspvid~dG~-IwIgSdggL~a~d~-~G----~~~W~~~~~~~~~i-~~sp~iD~--dG~IwV-gT-~ggL~~id~~~~  107 (626)
                      ........+|. |.+++++.+..++. ++    .....+....  .. +.++....  +|++.+ +. ++.|..++..++
T Consensus        21 v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~--~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~   98 (615)
T 1pgu_A           21 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHG--SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD   98 (615)
T ss_dssp             CCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTT--TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred             eeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCC--CceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCC
Confidence            34445556665 44456777888887 66    4443332211  23 45666677  777554 44 677888777432


Q ss_pred             ccc---cceeEEEecCCCCCCCCCCeeEEEEEEcCCe-EEEEEcC----CeEEEEeCCCcEEEEECCccccccccccccc
Q 006913          108 GTS---ESATQVFYGTGSGKGGTGAIAGIAVSTSSSS-VYINVKG----RALFAFMTHGQLLWSAGPVLDQLGYRQGCTK  179 (626)
Q Consensus       108 ~~~---~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~-LwIgT~~----gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~  179 (626)
                      ...   .......+.     .. ...+..+....++. |..++.+    +.|+.+| .++.......            +
T Consensus        99 ~~~~~~~~~~~~~~~-----~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d-~~~~~~~~~~------------~  159 (615)
T 1pgu_A           99 KESNSVEVNVKSEFQ-----VL-AGPISDISWDFEGRRLCVVGEGRDNFGVFISWD-SGNSLGEVSG------------H  159 (615)
T ss_dssp             GGGTEEEEEEEEEEE-----CC-SSCEEEEEECTTSSEEEEEECCSSCSEEEEETT-TCCEEEECCS------------C
T ss_pred             cccccccccccchhh-----cc-cccEEEEEEeCCCCEEEEeccCCCCccEEEEEE-CCCcceeeec------------C
Confidence            000   000111111     11 12344444445554 5555543    3455555 3444333200            0


Q ss_pred             CCCCCccccceEEEcCCC--eEEEEcCCCeEEEEeCCCCeEEEEEcCCCCC---cceeeeeecC-Ce-EEEEEcCCCEEE
Q 006913          180 TDVDCYFTSVPVIDQCEG--SIYISNTQGELYSLSAHSPYFNWIQDLSSFD---KAFTLTPGNN-GY-LYVTIPVRALVL  252 (626)
Q Consensus       180 ~l~~~~i~sspviD~~dG--~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~---~v~sI~~D~d-G~-LwVGT~~gG~l~  252 (626)
                         ...+ ..+...+ ++  .+..+..++.|..+|..+++........ ..   .+.++....+ |. |..++ ..+.+.
T Consensus       160 ---~~~v-~~~~~~~-~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~  232 (615)
T 1pgu_A          160 ---SQRI-NACHLKQ-SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTH-HKQGSFVRDVEFSPDSGEFVITVG-SDRKIS  232 (615)
T ss_dssp             ---SSCE-EEEEECS-SSSCEEEEEETTTEEEEEETTTBEEEEEECSS-SCTTCCEEEEEECSTTCCEEEEEE-TTCCEE
T ss_pred             ---CccE-EEEEECC-CCCcEEEEEeCCCcEEEEeCCCcceeeeeccc-CCCCceEEEEEECCCCCCEEEEEe-CCCeEE
Confidence               0111 3344443 44  5778888899999999887765543311 22   4666776666 65 55555 457888


Q ss_pred             EEECCCCcEEEEEec---CCCCCceeeEEEeeCCeEEEEEcCCeEEEEcCC-CCEEEE
Q 006913          253 ALDTSSGNILWHKSV---GPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPS-GVLNKF  306 (626)
Q Consensus       253 alD~~tG~~~w~~~~---~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~-g~~~~~  306 (626)
                      .+|..+++.......   .. ...+..+.......++.++.++.|..+|.. ++....
T Consensus       233 vwd~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~  289 (615)
T 1pgu_A          233 CFDGKSGEFLKYIEDDQEPV-QGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQK  289 (615)
T ss_dssp             EEETTTCCEEEECCBTTBCC-CSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             EEECCCCCEeEEeccccccc-CCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEE
Confidence            899889988765511   21 123444555524467778888899999975 554443

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.29  E-value=0.13  Score=56.01  Aligned_cols=100  Identities=8%  Similarity=0.122  Sum_probs=59.6

Q ss_pred             ceEEEcCCCeEEEEcCCC-eEEEEeCCCCeEEEEEcCCC-------CCcceeeeeec----CCeEEEEEcC---------
Q 006913          189 VPVIDQCEGSIYISNTQG-ELYSLSAHSPYFNWIQDLSS-------FDKAFTLTPGN----NGYLYVTIPV---------  247 (626)
Q Consensus       189 spviD~~dG~LwIGT~~G-gL~~ld~~tg~~~w~~~~~s-------~~~v~sI~~D~----dG~LwVGT~~---------  247 (626)
                      .+..+. +|+|||+...+ .|++++..++...-......       ......++.+.    +|.||+....         
T Consensus        31 ~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~  109 (454)
T 1cru_A           31 ALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKE  109 (454)
T ss_dssp             EEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CC
T ss_pred             EEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCccc
Confidence            356676 89999998876 49999876665543322221       12234567765    7899998632         


Q ss_pred             ---CCEEEEEECCC--CcE-----EEEEecCC-CCCceeeEEEeeCCeEEEEEc
Q 006913          248 ---RALVLALDTSS--GNI-----LWHKSVGP-LGSAEYAPVVDSNGWISVGSL  290 (626)
Q Consensus       248 ---gG~l~alD~~t--G~~-----~w~~~~~~-l~~~~sspvvD~dG~IWVGT~  290 (626)
                         ...|+.++...  +..     +.. .... ..+....++++++|+|||++.
T Consensus       110 ~~~~~~v~r~~~~~~~~~~~~~~~i~~-~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          110 LPNQTIIRRYTYNKSTDTLEKPVDLLA-GLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             SCEEEEEEEEEEETTTTEEEEEEEEEE-EECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             cccccEEEEEEECCCCCCcCCcEEEEE-cCCCCCCCCCCeEeECCCCeEEEEEC
Confidence               23566665322  222     111 1111 112356788999999999864

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.26  E-value=0.41  Score=54.04  Aligned_cols=194  Identities=16%  Similarity=0.041  Sum_probs=107.9

Q ss_pred             eeeEEe-eCCEEEEEe--CCcEEEEcCCCCEEEEEeCCCCCCcccCeEEec-CCeEEEEE--CCeEEEEECCCCccccce
Q 006913           40 SKPLIG-EDGKIYACS--EKTLFAFESNGTIAWSLDLDFTCNIGTAPVHGG-TGEVYIVA--ENRVLKVDLLKIGTSESA  113 (626)
Q Consensus        40 Sspvid-~dG~IwIgS--dggL~a~d~~G~~~W~~~~~~~~~i~~sp~iD~-dG~IwVgT--~ggL~~id~~~~~~~~~~  113 (626)
                      ..+..+ .+|.||+..  .+.+++++.+|...+.............+.+|. .++||++.  .+.|.+++.++..     
T Consensus        43 ~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~-----  117 (619)
T 3s94_A           43 AAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-----  117 (619)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-----
T ss_pred             EEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC-----
Confidence            344444 378899886  467888888664211111111101234567887 67899886  5789999987642     


Q ss_pred             eEEEecCCCCCCCCCCeeEEEEEE-cCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccce
Q 006913          114 TQVFYGTGSGKGGTGAIAGIAVST-SSSSVYINVKG--RALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVP  190 (626)
Q Consensus       114 ~~~~~~~~~~~~~~~~~I~s~~~d-~dG~LwIgT~~--gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~ssp  190 (626)
                      ........    . ... ..++.+ .+|.||+...+  ..|...+++|...-....            ..+   .....+
T Consensus       118 ~~~l~~~~----l-~~P-~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~------------~~~---~~P~Gl  176 (619)
T 3s94_A          118 RKVLFWQE----L-DQP-RAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN------------SEI---YWPNGL  176 (619)
T ss_dssp             CEEEECSS----C-SCC-CCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC------------SSC---SSEEEE
T ss_pred             EEEEEeCC----C-CCC-ceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEe------------CCC---CCCcEE
Confidence            12222111    0 111 123444 56899998754  578888888654322100            000   011336


Q ss_pred             EEEcCCCeEEEEcC-CCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcE
Q 006913          191 VIDQCEGSIYISNT-QGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNI  261 (626)
Q Consensus       191 viD~~dG~LwIGT~-~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~  261 (626)
                      ++|..+++||++.. .+.|.++|.++........ ........++.+.+ +||+.......+..+|+.+|+.
T Consensus       177 ald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~-~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~  246 (619)
T 3s94_A          177 TLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK-GSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEG  246 (619)
T ss_dssp             EEETTTTEEEEEETTTCCEEEESSSCCEEC----------CCCEEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred             EEEccCCEEEEEeCCCCeEEEecCCCCccEEEEe-CCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence            77754788988864 5679999998754322211 11223455666644 8999876667888899888764

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=96.17  E-value=1.5  Score=45.53  Aligned_cols=148  Identities=11%  Similarity=-0.002  Sum_probs=87.1

Q ss_pred             CCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCe
Q 006913          139 SSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPY  217 (626)
Q Consensus       139 dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~  217 (626)
                      +..|..++.++.|..+|.. ++.+..+..       .   .+   ... ..++...+.+..|..|+.+|.|..+|.++++
T Consensus       182 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-------~---~h---~~~-v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~  247 (437)
T 3gre_A          182 KSLLVALTNLSRVIIFDIRTLERLQIIEN-------S---PR---HGA-VSSICIDEECCVLILGTTRGIIDIWDIRFNV  247 (437)
T ss_dssp             CEEEEEEETTSEEEEEETTTCCEEEEEEC-------C---GG---GCC-EEEEEECTTSCEEEEEETTSCEEEEETTTTE
T ss_pred             CCEEEEEeCCCeEEEEeCCCCeeeEEEcc-------C---CC---CCc-eEEEEECCCCCEEEEEcCCCeEEEEEcCCcc
Confidence            3456677888889999974 777665410       0   00   011 2344555424457778888889999999877


Q ss_pred             EEEEEcCCCCCcceee----eeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCC------------------------
Q 006913          218 FNWIQDLSSFDKAFTL----TPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGP------------------------  269 (626)
Q Consensus       218 ~~w~~~~~s~~~v~sI----~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~------------------------  269 (626)
                      ............+.++    ....++.+.+....++.+..+|..+++.........                        
T Consensus       248 ~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  327 (437)
T 3gre_A          248 LIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIR  327 (437)
T ss_dssp             EEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCC
T ss_pred             EEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccc
Confidence            6554332222234444    223456555544455678889988888765443110                        


Q ss_pred             CCCceeeEEEeeCCeEEEEEcCCeEEEEcCC
Q 006913          270 LGSAEYAPVVDSNGWISVGSLDGLLYSFSPS  300 (626)
Q Consensus       270 l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~  300 (626)
                      ....+.++..+.+..|..|+.++.|..+|..
T Consensus       328 ~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~  358 (437)
T 3gre_A          328 SLNALSTISVSNDKILLTDEATSSIVMFSLN  358 (437)
T ss_dssp             SGGGGCCEEEETTEEEEEEGGGTEEEEEETT
T ss_pred             cCCceEEEEECCceEEEecCCCCeEEEEECC
Confidence            0011334556633357777888999999964

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=96.14  E-value=2.4  Score=47.60  Aligned_cols=245  Identities=13%  Similarity=0.064  Sum_probs=121.3

Q ss_pred             ceeeeeEEeeCCE-EEEEe--CC-----cEEEEcC-CCCEEEEEeCCCCC----------------------CcccCeEE
Q 006913           37 FRLSKPLIGEDGK-IYACS--EK-----TLFAFES-NGTIAWSLDLDFTC----------------------NIGTAPVH   85 (626)
Q Consensus        37 ~~~Sspvid~dG~-IwIgS--dg-----gL~a~d~-~G~~~W~~~~~~~~----------------------~i~~sp~i   85 (626)
                      .....+....||. |+.++  ++     .|+.+|. +|+...........                      ..+.++..
T Consensus        37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  116 (741)
T 2ecf_A           37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW  116 (741)
T ss_dssp             CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred             CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence            3456777777886 44444  34     5889997 67654322211000                      01356677


Q ss_pred             ecCCe-EEEEECCeEEEEECCCC---ccccceeEEEecCCCCCCCCCCeeEEEEEEcCCe-EEEEEcCCeEEEEeCC-Cc
Q 006913           86 GGTGE-VYIVAENRVLKVDLLKI---GTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSS-VYINVKGRALFAFMTH-GQ  159 (626)
Q Consensus        86 D~dG~-IwVgT~ggL~~id~~~~---~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~-LwIgT~~gGL~a~d~~-G~  159 (626)
                      ..+|+ |.++..+.|+.+|..++   ..    ...        ......+..+....||+ |.+++ ++.|+.+|.. |+
T Consensus       117 SpDg~~l~~~~~~~i~~~d~~~~~~~~~----~~l--------~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~  183 (741)
T 2ecf_A          117 SPDAQRLLFPLGGELYLYDLKQEGKAAV----RQL--------THGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGR  183 (741)
T ss_dssp             CTTSSEEEEEETTEEEEEESSSCSTTSC----CBC--------CCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTE
T ss_pred             CCCCCEEEEEeCCcEEEEECCCCCcceE----EEc--------ccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCC
Confidence            78887 44455788999998765   21    000        00112334444455665 54444 5689999976 54


Q ss_pred             EEEEECCcccccccccccccCCCCCc-------cccceEEEcCCCeEEEEcCCC--------------------------
Q 006913          160 LLWSAGPVLDQLGYRQGCTKTDVDCY-------FTSVPVIDQCEGSIYISNTQG--------------------------  206 (626)
Q Consensus       160 ~~w~~~~~~~~~~~~~~~~~~l~~~~-------i~sspviD~~dG~LwIGT~~G--------------------------  206 (626)
                      ..... .   . + ......... ..       ....+...+.+..|+++..++                          
T Consensus       184 ~~~~~-~---~-~-~~~~~~g~~-~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~  256 (741)
T 2ecf_A          184 QMQLT-A---D-G-STTIGNGIA-EFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAA  256 (741)
T ss_dssp             EEECC-C---C-C-CSSEEESCC-CHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBT
T ss_pred             EEEec-c---C-C-ccceecccc-ceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCC
Confidence            43211 0   0 0 000000000 00       012234433123355554332                          


Q ss_pred             -------eEEEEeCCC-CeEEEEEcC-CCCCcceeeeeecCC-eEEEEEc----CCCEEEEEECCCCcEEEEEecCC--C
Q 006913          207 -------ELYSLSAHS-PYFNWIQDL-SSFDKAFTLTPGNNG-YLYVTIP----VRALVLALDTSSGNILWHKSVGP--L  270 (626)
Q Consensus       207 -------gL~~ld~~t-g~~~w~~~~-~s~~~v~sI~~D~dG-~LwVGT~----~gG~l~alD~~tG~~~w~~~~~~--l  270 (626)
                             .|+.+|.++ ++....... .....+..+.. .|| .|+++..    ....++.+|..+|+.........  .
T Consensus       257 g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~  335 (741)
T 2ecf_A          257 GDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTW  335 (741)
T ss_dssp             TSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred             CCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCc
Confidence                   678888887 776544221 11122334444 556 4555442    12468888988887654332211  0


Q ss_pred             CCceeeEEEeeCCeEEEE-EcCC--eEEEEcCCCC
Q 006913          271 GSAEYAPVVDSNGWISVG-SLDG--LLYSFSPSGV  302 (626)
Q Consensus       271 ~~~~sspvvD~dG~IWVG-T~~g--GLy~~d~~g~  302 (626)
                      ......+...+||.+++. ..++  .||.++.+++
T Consensus       336 ~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~  370 (741)
T 2ecf_A          336 VPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK  370 (741)
T ss_dssp             CCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC
T ss_pred             CCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC
Confidence            001234566667765444 4333  5888886665

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=96.09  E-value=1.4  Score=45.44  Aligned_cols=199  Identities=11%  Similarity=-0.001  Sum_probs=108.5

Q ss_pred             ccCeEEec-CCeEEE-EE-CCeEEEEECCCCcccc---ceeEEEecCCCCCCCCCCeeEEEEEEcCC--eEEEEEcCCeE
Q 006913           80 GTAPVHGG-TGEVYI-VA-ENRVLKVDLLKIGTSE---SATQVFYGTGSGKGGTGAIAGIAVSTSSS--SVYINVKGRAL  151 (626)
Q Consensus        80 ~~sp~iD~-dG~IwV-gT-~ggL~~id~~~~~~~~---~~~~~~~~~~~~~~~~~~~I~s~~~d~dG--~LwIgT~~gGL  151 (626)
                      +.++.... ++++.+ ++ ++.|..++..++....   .......      .. ...+..+....++  .|..++.++-|
T Consensus        84 V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~------~h-~~~v~~~~~~p~~~~~l~s~~~dg~i  156 (402)
T 2aq5_A           84 VLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE------GH-TKRVGIVAWHPTAQNVLLSAGCDNVI  156 (402)
T ss_dssp             EEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEE------CC-SSCEEEEEECSSBTTEEEEEETTSCE
T ss_pred             EEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEec------CC-CCeEEEEEECcCCCCEEEEEcCCCEE
Confidence            34455555 565544 45 6778888877652110   0011111      11 1234444444443  56677777889


Q ss_pred             EEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEE-cCCCCCc
Q 006913          152 FAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQ-DLSSFDK  229 (626)
Q Consensus       152 ~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~-~~~s~~~  229 (626)
                      ..+|.. ++....+..    ..      +   ... ..++...+.+..|..++.++.|..+|.++++..... .......
T Consensus       157 ~iwd~~~~~~~~~~~~----~~------~---~~~-v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  222 (402)
T 2aq5_A          157 LVWDVGTGAAVLTLGP----DV------H---PDT-IYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTR  222 (402)
T ss_dssp             EEEETTTTEEEEEECT----TT------C---CSC-EEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSS
T ss_pred             EEEECCCCCccEEEec----CC------C---CCc-eEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCc
Confidence            999975 665544300    00      0   011 133444432456778888999999999998876654 2111122


Q ss_pred             ceeeeeecCCeEEEEE---cCCCEEEEEECCCCcE-EEEEecCCCCCceeeEEEeeCCe-EEEE-EcCCeEEEEcCC
Q 006913          230 AFTLTPGNNGYLYVTI---PVRALVLALDTSSGNI-LWHKSVGPLGSAEYAPVVDSNGW-ISVG-SLDGLLYSFSPS  300 (626)
Q Consensus       230 v~sI~~D~dG~LwVGT---~~gG~l~alD~~tG~~-~w~~~~~~l~~~~sspvvD~dG~-IWVG-T~~gGLy~~d~~  300 (626)
                      +..+....+|.+.+..   ...+.+..+|..++.. ........ ...+..+..+++|. ++++ +.++.|..++..
T Consensus       223 ~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~  298 (402)
T 2aq5_A          223 PVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDT-SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEIT  298 (402)
T ss_dssp             CCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCC-CSSCEEEEEETTTTEEEEEETTCSCEEEEEEC
T ss_pred             ceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccC-CCceeEEEEcCCCCEEEEEEcCCCeEEEEEec
Confidence            4455555678766654   3456888888877653 22222221 12245567776765 4444 457888888854

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=96.06  E-value=1.3  Score=43.76  Aligned_cols=234  Identities=11%  Similarity=0.009  Sum_probs=125.2

Q ss_pred             ccCeEEecCCeEEEE-E-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEE-EcCCeEEEEEcCCeEEEEeC
Q 006913           80 GTAPVHGGTGEVYIV-A-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVS-TSSSSVYINVKGRALFAFMT  156 (626)
Q Consensus        80 ~~sp~iD~dG~IwVg-T-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~-d~dG~LwIgT~~gGL~a~d~  156 (626)
                      +.++....+|++.+. . ++.+...+......     ......     . ...+..... ..+..|..++.++.+..+|.
T Consensus        89 V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~-----~~~~~~-----~-~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~  157 (340)
T 4aow_A           89 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTT-----TRRFVG-----H-TKDVLSVAFSSDNRQIVSGSRDKTIKLWNT  157 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEE-----EEEEEC-----C-SSCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred             EEEEEECCCCCEEEEEcccccceEEeecccce-----eeeecC-----C-CCceeEEEEeecCccceeecCCCeEEEEEe
Confidence            445566677775554 4 67787788766421     111111     1 112222222 23445667777777888887


Q ss_pred             CCcEEEEECCcccccccccccccCCCCCccccceEE--EcCCCe-EEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceee
Q 006913          157 HGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVI--DQCEGS-IYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTL  233 (626)
Q Consensus       157 ~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspvi--D~~dG~-LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI  233 (626)
                      .+........    .+      .   ...+ .....  +. .+. +..+..++.|..+|.++++....... ....+.++
T Consensus       158 ~~~~~~~~~~----~~------~---~~~v-~~~~~~~~~-~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~-h~~~v~~~  221 (340)
T 4aow_A          158 LGVCKYTVQD----ES------H---SEWV-SCVRFSPNS-SNPIIVSCGWDKLVKVWNLANCKLKTNHIG-HTGYLNTV  221 (340)
T ss_dssp             TSCEEEEECS----SS------C---SSCE-EEEEECSCS-SSCEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEE
T ss_pred             CCCceEEEEe----cc------c---cCcc-cceEEccCC-CCcEEEEEcCCCEEEEEECCCCceeeEecC-CCCcEEEE
Confidence            5433332200    00      0   0011 11222  21 233 34455677889999998876554321 12346677


Q ss_pred             eeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEEEEEcCCeEEEEcCCCCE-EEEeeccC-
Q 006913          234 TPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPSGVL-NKFSKSDT-  311 (626)
Q Consensus       234 ~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~g~~-~~~~~~~~-  311 (626)
                      ....+|.+.+.....+.+..+|..++.........   ..+..+...+++.+..++.++.|..+|..+.. ........ 
T Consensus       222 ~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~  298 (340)
T 4aow_A          222 TVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG---DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVI  298 (340)
T ss_dssp             EECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS---SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC--
T ss_pred             EECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC---ceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccce
Confidence            77777765544334578888998888777655433   23455666778888899889999999976443 32222100 


Q ss_pred             CCCccccCceEEEEEEecCCcEEEEEeeecCee
Q 006913          312 SDSVIQSSPYWFHLLGPSIGLKAILCLMVVGQF  344 (626)
Q Consensus       312 ~~~~ilssp~V~~Il~DsdG~IwI~T~t~~Ggl  344 (626)
                      ..........|.++....+|... .++...|.+
T Consensus       299 ~~~~~~h~~~v~~l~~s~dg~~l-~sgs~Dg~v  330 (340)
T 4aow_A          299 STSSKAEPPQCTSLAWSADGQTL-FAGYTDNLV  330 (340)
T ss_dssp             -----CCCCCEEEEEECTTSSEE-EEEETTSCE
T ss_pred             eeeccCCCCCEEEEEECCCCCEE-EEEeCCCEE
Confidence            00000123446666666677654 444444444

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=96.04  E-value=2.6  Score=47.21  Aligned_cols=195  Identities=10%  Similarity=0.031  Sum_probs=108.3

Q ss_pred             eEEeeCCEEEE-Ee-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEE-EE-CCeEEEEECCCCccccceeEE
Q 006913           42 PLIGEDGKIYA-CS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYI-VA-ENRVLKVDLLKIGTSESATQV  116 (626)
Q Consensus        42 pvid~dG~IwI-gS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwV-gT-~ggL~~id~~~~~~~~~~~~~  116 (626)
                      .....+|.+.+ |+ ++.+..+|. ++.....+....  ..+.++....++...+ ++ ++.|...|..+.      ...
T Consensus       436 v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~------~~~  507 (694)
T 3dm0_A          436 VVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHT--KDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE------CKY  507 (694)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS--SCEEEEEECTTSSCEEEEETTSCEEEECTTSC------EEE
T ss_pred             EEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCC--CCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC------cce
Confidence            34445665544 55 567888887 666544332211  2344555566666444 45 677888886543      122


Q ss_pred             EecCCCCCCCCCCeeEEEEEEcC---CeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEE
Q 006913          117 FYGTGSGKGGTGAIAGIAVSTSS---SSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVI  192 (626)
Q Consensus       117 ~~~~~~~~~~~~~~I~s~~~d~d---G~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspvi  192 (626)
                      ..... ...+ ...+..+....+   ..|..++.++.|..+|.. ++.......            +   ... ..++..
T Consensus       508 ~~~~~-~~~h-~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~------------h---~~~-v~~v~~  569 (694)
T 3dm0_A          508 TISEG-GEGH-RDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAG------------H---TGY-VSTVAV  569 (694)
T ss_dssp             EECSS-TTSC-SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECC------------C---SSC-EEEEEE
T ss_pred             eeccC-CCCC-CCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcC------------C---CCC-EEEEEE
Confidence            22111 0111 123444333333   357777888889899975 655443210            0   011 234455


Q ss_pred             EcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEE
Q 006913          193 DQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHK  265 (626)
Q Consensus       193 D~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~  265 (626)
                      .+.+..|..|+.++.|..+|..+++......  ....+.+++...++.+.++.. .+.+...|..++......
T Consensus       570 spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~  639 (694)
T 3dm0_A          570 SPDGSLCASGGKDGVVLLWDLAEGKKLYSLE--ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDL  639 (694)
T ss_dssp             CTTSSEEEEEETTSBCEEEETTTTEEEECCB--CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred             eCCCCEEEEEeCCCeEEEEECCCCceEEEec--CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhh
Confidence            5423446667778889999999887654322  122355666666777666654 456888898888776543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=96.03  E-value=0.12  Score=52.83  Aligned_cols=238  Identities=8%  Similarity=-0.051  Sum_probs=113.5

Q ss_pred             eeeEEeeCCEEEE-Ee-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEE-EEE-CCeEEEEECCCCcccccee
Q 006913           40 SKPLIGEDGKIYA-CS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVY-IVA-ENRVLKVDLLKIGTSESAT  114 (626)
Q Consensus        40 Sspvid~dG~IwI-gS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~Iw-VgT-~ggL~~id~~~~~~~~~~~  114 (626)
                      .......+|.+.+ |+ ++.+..+|. ++...-...+......+.++....+|++. .++ ++.|..+|..++.. +. .
T Consensus        15 ~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~-~~-~   92 (377)
T 3dwl_C           15 YEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT-WK-Q   92 (377)
T ss_dssp             SCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C-CC-C
T ss_pred             EEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc-ee-e
Confidence            3444445666544 43 556777776 44211111111111234455566666644 445 67888888766420 00 0


Q ss_pred             EEEecCCCCCCCCCCeeEEEEEEcC-CeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEE
Q 006913          115 QVFYGTGSGKGGTGAIAGIAVSTSS-SSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVI  192 (626)
Q Consensus       115 ~~~~~~~~~~~~~~~~I~s~~~d~d-G~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspvi  192 (626)
                      ...+.     .. ...+..+....+ ..|..++.++.|..+|.+ ++. |...   ..+.  .  .+   ... ..++..
T Consensus        93 ~~~~~-----~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~---~~~~--~--~h---~~~-v~~~~~  154 (377)
T 3dwl_C           93 TLVLL-----RL-NRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND-WWVS---KHLK--R--PL---RST-ILSLDW  154 (377)
T ss_dssp             EEECC-----CC-SSCEEEEECCTTSSCCEEEESSSCEEECCC------CCCC---EEEC--S--SC---CSC-EEEEEE
T ss_pred             eeEec-----cc-CCceEEEEECCCCCEEEEEecCCeEEEEEECCccc-ceee---eEee--c--cc---CCC-eEEEEE
Confidence            11110     11 123333333334 457777777778888865 432 1100   0000  0  00   011 233444


Q ss_pred             EcCCCeEEEEcCCCeEEEEeCCCCe----------------EEEEEcCCCCCcceeeeeecCCe-EEEEEcCCCEEEEEE
Q 006913          193 DQCEGSIYISNTQGELYSLSAHSPY----------------FNWIQDLSSFDKAFTLTPGNNGY-LYVTIPVRALVLALD  255 (626)
Q Consensus       193 D~~dG~LwIGT~~GgL~~ld~~tg~----------------~~w~~~~~s~~~v~sI~~D~dG~-LwVGT~~gG~l~alD  255 (626)
                      .+.+..|..|+.++.|..+|.+.+.                -...........+.++....+|. |..++ .++.+..+|
T Consensus       155 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~iwd  233 (377)
T 3dwl_C          155 HPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAG-HDSSVTIAY  233 (377)
T ss_dssp             CTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEE-TTTEEC-CE
T ss_pred             cCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEe-CCCcEEEEE
Confidence            4424457778788888888875321                11111112123456666667775 55555 456787778


Q ss_pred             CCCCcE----EEEEecCCCCCceeeEEEeeCCeEEEEEcCCeEEEEcCC
Q 006913          256 TSSGNI----LWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPS  300 (626)
Q Consensus       256 ~~tG~~----~w~~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~  300 (626)
                      ..++..    .......  ...+.++...++|.+.+...++++..++..
T Consensus       234 ~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~  280 (377)
T 3dwl_C          234 PSAPEQPPRALITVKLS--QLPLRSLLWANESAIVAAGYNYSPILLQGN  280 (377)
T ss_dssp             ECSTTSCEEECCCEECS--SSCEEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred             CCCCCCcceeeEeecCC--CCceEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence            777764    2111111  123455777778888887778888888764

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=96.00  E-value=2.6  Score=46.87  Aligned_cols=237  Identities=10%  Similarity=0.035  Sum_probs=123.7

Q ss_pred             EeeCCEEEEEe--CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCe-EEEEE-CCeEEEEECC--CCccccceeEE
Q 006913           44 IGEDGKIYACS--EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGE-VYIVA-ENRVLKVDLL--KIGTSESATQV  116 (626)
Q Consensus        44 id~dG~IwIgS--dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~-IwVgT-~ggL~~id~~--~~~~~~~~~~~  116 (626)
                      .|.++.+|++.  ++.+..+|. +++.+..+..+.   ....+.++.+|+ +|++. ++.|..||..  +.+     ...
T Consensus       163 ~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~---~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~-----~v~  234 (567)
T 1qks_A          163 WDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY---AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT-----TVA  234 (567)
T ss_dssp             CCGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS---CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC-----EEE
T ss_pred             cCCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC---CccceEECCCCCEEEEEcCCCeEEEEECCCCCCc-----EeE
Confidence            33456778776  467999998 788877666542   233566777776 78877 6899999985  432     111


Q ss_pred             EecCCCCCCCCCCeeEEEEEE----cCCeEEEEEcC-CeEEEEeC-CCcEEEEECCcccccccccccccCCCCCccccce
Q 006913          117 FYGTGSGKGGTGAIAGIAVST----SSSSVYINVKG-RALFAFMT-HGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVP  190 (626)
Q Consensus       117 ~~~~~~~~~~~~~~I~s~~~d----~dG~LwIgT~~-gGL~a~d~-~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~ssp  190 (626)
                      ....     . .......+..    .+..+|++.+. +.+..+|. +.+.+.....  ......   ........-...+
T Consensus       235 ~i~~-----G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~--~~~~~~---~~~~~p~~rva~i  303 (567)
T 1qks_A          235 EIKI-----G-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQST--RGMTYD---EQEYHPEPRVAAI  303 (567)
T ss_dssp             EEEC-----C-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEEC--CEECTT---TCCEESCCCEEEE
T ss_pred             EEec-----C-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEec--cccccc---cccccCCCceEEE
Confidence            1111     0 1122223321    34478888765 77888996 4777665310  000000   0000000000112


Q ss_pred             EEEcCCCeE-EEEcC-CCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCe-EEEEEcCCCEEEEEECCCCcEEEEEec
Q 006913          191 VIDQCEGSI-YISNT-QGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGY-LYVTIPVRALVLALDTSSGNILWHKSV  267 (626)
Q Consensus       191 viD~~dG~L-wIGT~-~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~-LwVGT~~gG~l~alD~~tG~~~w~~~~  267 (626)
                      +... ++.. ++... .|.|..+|..+....-............+..+.+|+ +|++......+..+|.++++.......
T Consensus       304 ~~s~-~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~v  382 (567)
T 1qks_A          304 LASH-YRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDT  382 (567)
T ss_dssp             EECS-SSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred             EEcC-CCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEec
Confidence            2221 2223 33222 355666666543211111111111233455677775 677765567888999999998877666


Q ss_pred             -CCCCCc-eeeEEEeeC-CeEEEEEc--CCeEEEEcCC
Q 006913          268 -GPLGSA-EYAPVVDSN-GWISVGSL--DGLLYSFSPS  300 (626)
Q Consensus       268 -~~l~~~-~sspvvD~d-G~IWVGT~--~gGLy~~d~~  300 (626)
                       +..... ...-..+++ |.+|+.+.  ++.|..++.+
T Consensus       383 gg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~  420 (567)
T 1qks_A          383 GGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTD  420 (567)
T ss_dssp             SSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred             cCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCC
Confidence             321000 011124554 78998663  3678888854

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=95.83  E-value=1.7  Score=43.19  Aligned_cols=257  Identities=9%  Similarity=-0.085  Sum_probs=135.8

Q ss_pred             ceeeeeEEeeC---CEEE-EEe-CCcEEEEcC-C-CCEE-EEEeCCCCCCcccCeEEecCCeE-EEEE-CCeEEEEECCC
Q 006913           37 FRLSKPLIGED---GKIY-ACS-EKTLFAFES-N-GTIA-WSLDLDFTCNIGTAPVHGGTGEV-YIVA-ENRVLKVDLLK  106 (626)
Q Consensus        37 ~~~Sspvid~d---G~Iw-IgS-dggL~a~d~-~-G~~~-W~~~~~~~~~i~~sp~iD~dG~I-wVgT-~ggL~~id~~~  106 (626)
                      ..........+   |.+. .|+ ++.+..+|. + +... .......  ..+.++....++.. ..++ ++.|..+|..+
T Consensus        40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~  117 (368)
T 3mmy_A           40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHT--GPVLDVCWSDDGSKVFTASCDKTAKMWDLSS  117 (368)
T ss_dssp             SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECS--SCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEecccc--CCEEEEEECcCCCEEEEEcCCCcEEEEEcCC
Confidence            34445555555   4544 455 566777776 3 5443 2221111  23445556667764 4455 67888899887


Q ss_pred             CccccceeEEEecCCCCCCCCCCeeEEEEE--EcCCe-EEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCC
Q 006913          107 IGTSESATQVFYGTGSGKGGTGAIAGIAVS--TSSSS-VYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDV  182 (626)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~--d~dG~-LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~  182 (626)
                      +..     .....      ... .+..+..  ..++. |..++.++.|..+|.. ++....+..       .        
T Consensus       118 ~~~-----~~~~~------~~~-~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------~--------  170 (368)
T 3mmy_A          118 NQA-----IQIAQ------HDA-PVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL-------P--------  170 (368)
T ss_dssp             TEE-----EEEEE------CSS-CEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEEC-------S--------
T ss_pred             CCc-----eeecc------ccC-ceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEec-------C--------
Confidence            631     11111      112 3333333  45555 6667777888889964 655443300       0        


Q ss_pred             CCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCC-CCccee--eeeecCC---eEEEEEcCCCEEEEEEC
Q 006913          183 DCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSS-FDKAFT--LTPGNNG---YLYVTIPVRALVLALDT  256 (626)
Q Consensus       183 ~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s-~~~v~s--I~~D~dG---~LwVGT~~gG~l~alD~  256 (626)
                       ... ......  ...+++++.++.+..++.+.....+...... ......  +..+...   .+.+++. ++.+..+|.
T Consensus       171 -~~~-~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-dg~i~i~~~  245 (368)
T 3mmy_A          171 -ERC-YCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI-EGRVAIHYI  245 (368)
T ss_dssp             -SCE-EEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET-TSEEEEEES
T ss_pred             -CCc-eEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC-CCcEEEEec
Confidence             001 112233  5678888888899999998866555432211 111222  2222111   1666664 567777776


Q ss_pred             CCCc---EEEEEecCCC--------C--CceeeEEEeeCC-eEEEEEcCCeEEEEcCC-CCEEEEeeccCCCCccccCce
Q 006913          257 SSGN---ILWHKSVGPL--------G--SAEYAPVVDSNG-WISVGSLDGLLYSFSPS-GVLNKFSKSDTSDSVIQSSPY  321 (626)
Q Consensus       257 ~tG~---~~w~~~~~~l--------~--~~~sspvvD~dG-~IWVGT~~gGLy~~d~~-g~~~~~~~~~~~~~~ilssp~  321 (626)
                      .++.   ..........        .  ..+.++...++| .|..|+.++.|..+|.. ++......        .....
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------~~~~~  317 (368)
T 3mmy_A          246 NPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE--------QLDQP  317 (368)
T ss_dssp             SCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC--------CCSSC
T ss_pred             CCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec--------CCCCC
Confidence            6552   1222111100        0  024456666665 67788889999999975 54443322        11234


Q ss_pred             EEEEEEecCCcEEE
Q 006913          322 WFHLLGPSIGLKAI  335 (626)
Q Consensus       322 V~~Il~DsdG~IwI  335 (626)
                      |.++....+|...+
T Consensus       318 v~~~~~s~~g~~l~  331 (368)
T 3mmy_A          318 ISACCFNHNGNIFA  331 (368)
T ss_dssp             EEEEEECTTSSCEE
T ss_pred             ceEEEECCCCCeEE
Confidence            66777777887653

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=95.80  E-value=2.4  Score=45.00  Aligned_cols=211  Identities=10%  Similarity=0.001  Sum_probs=109.4

Q ss_pred             eEEeeCC-EEEEEe---CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE-CCeEEEEECCC-Ccccccee
Q 006913           42 PLIGEDG-KIYACS---EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA-ENRVLKVDLLK-IGTSESAT  114 (626)
Q Consensus        42 pvid~dG-~IwIgS---dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT-~ggL~~id~~~-~~~~~~~~  114 (626)
                      ..+..|| .+|++.   ++.+..+|. +++.+-.+..+. + .  .+.-.....++..+ +|.+..++... ++.     
T Consensus       142 ~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g-~-~--~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v-----  212 (386)
T 3sjl_D          142 TSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-C-Y--HIFPTAPDTFFMHCRDGSLAKVAFGTEGTP-----  212 (386)
T ss_dssp             EEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-E-E--EEEEEETTEEEEEETTSCEEEEECCSSSCC-----
T ss_pred             EEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC-c-c--eeecCCCceeEEECCCCCEEEEECCCCCeE-----
Confidence            3555565 588875   357899998 777765555432 1 0  01111122333334 67777777654 321     


Q ss_pred             EEEecCCCCCCCCCCeeE-EEEEEcCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccccccc-cccCCCCCccccceEE
Q 006913          115 QVFYGTGSGKGGTGAIAG-IAVSTSSSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQG-CTKTDVDCYFTSVPVI  192 (626)
Q Consensus       115 ~~~~~~~~~~~~~~~~I~-s~~~d~dG~LwIgT~~gGL~a~d~~G~~~w~~~~~~~~~~~~~~-~~~~l~~~~i~sspvi  192 (626)
                      ...... ........... ......+|++++.+.++-++.+|..+.......+. .-+. ... ......+.  .....+
T Consensus       213 ~~~~~~-~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~-~~~~-~~~~~~g~~p~g--~q~~a~  287 (386)
T 3sjl_D          213 EITHTE-VFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAV-EALT-EAERADGWRPGG--WQQVAY  287 (386)
T ss_dssp             EEEECC-CCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCE-ESSC-HHHHHTTEEECS--SSCEEE
T ss_pred             EEeecc-eeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecce-eccc-cccccccccCCC--cceeeE
Confidence            110000 00000011111 11223678877778888899999753211111000 0000 000 00000000  012345


Q ss_pred             EcCCCeEEEEcC----------CCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCe--EEEEEcCCCEEEEEECCCCc
Q 006913          193 DQCEGSIYISNT----------QGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGY--LYVTIPVRALVLALDTSSGN  260 (626)
Q Consensus       193 D~~dG~LwIGT~----------~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~--LwVGT~~gG~l~alD~~tG~  260 (626)
                      ++..+++|+...          .+.|..+|.+++++.-+...+.  ....++.+.||+  ||+.....+.+..+|..+++
T Consensus       288 ~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k  365 (386)
T 3sjl_D          288 HRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE  365 (386)
T ss_dssp             ETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             CCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence            544788999764          1459999999998876544322  234567777774  67665446789999999999


Q ss_pred             EEEEEecC
Q 006913          261 ILWHKSVG  268 (626)
Q Consensus       261 ~~w~~~~~  268 (626)
                      .+-.....
T Consensus       366 ~~~~i~~~  373 (386)
T 3sjl_D          366 ELRSVNQL  373 (386)
T ss_dssp             EEEEECCC
T ss_pred             EEEEecCC
Confidence            87665444

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=95.77  E-value=0.95  Score=46.32  Aligned_cols=204  Identities=6%  Similarity=-0.082  Sum_probs=106.5

Q ss_pred             ccCeEEecCCeE-EEEE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEc--CCeEEEEEcCCeEEEEe
Q 006913           80 GTAPVHGGTGEV-YIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTS--SSSVYINVKGRALFAFM  155 (626)
Q Consensus        80 ~~sp~iD~dG~I-wVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~--dG~LwIgT~~gGL~a~d  155 (626)
                      +.++....++.+ ..++ ++.|..++......... ....+.     .... .+..+....  +..|..++.++.|..+|
T Consensus        70 v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~-~~~~~~-----~h~~-~v~~~~~~~~~~~~l~s~~~dg~v~iwd  142 (416)
T 2pm9_A           70 FNDLDWSHNNKIIAGALDNGSLELYSTNEANNAIN-SMARFS-----NHSS-SVKTVKFNAKQDNVLASGGNNGEIFIWD  142 (416)
T ss_dssp             EEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCC-EEEECC-----CSSS-CCCEEEECSSSTTBEEEECSSSCEEBCB
T ss_pred             eEEEEECCCCCeEEEEccCCeEEEeeccccccccc-chhhcc-----CCcc-ceEEEEEcCCCCCEEEEEcCCCeEEEEE
Confidence            344555566664 4445 67888888765210000 111111     1112 233333333  44566677777788888


Q ss_pred             CC-Cc------EEEEECCcccccccccccccCCCCCccccceEEEcC-CCeEEEEcCCCeEEEEeCCCCeEEEEEcCCC-
Q 006913          156 TH-GQ------LLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQC-EGSIYISNTQGELYSLSAHSPYFNWIQDLSS-  226 (626)
Q Consensus       156 ~~-G~------~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~-dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s-  226 (626)
                      .. ++      ......    .   .    .. .... ..++...+. +..|..++.++.|..+|.++++......... 
T Consensus       143 ~~~~~~~~~~~~~~~~~----~---~----~~-~~~~-v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  209 (416)
T 2pm9_A          143 MNKCTESPSNYTPLTPG----Q---S----MS-SVDE-VISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSP  209 (416)
T ss_dssp             TTTTSSCTTTCCCBCCC----C---S----CC-SSCC-CCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCC
T ss_pred             CCCCccccccccccccc----c---c----cC-CCCC-eeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecccc
Confidence            64 43      111100    0   0    00 0011 133444432 2456677788889999999987765543321 


Q ss_pred             ----CCcceeeeeecCC--eEEEEEcCCC---EEEEEECCCCc-EEEEEecCCCCCceeeEEEee-C-CeEEEEEcCCeE
Q 006913          227 ----FDKAFTLTPGNNG--YLYVTIPVRA---LVLALDTSSGN-ILWHKSVGPLGSAEYAPVVDS-N-GWISVGSLDGLL  294 (626)
Q Consensus       227 ----~~~v~sI~~D~dG--~LwVGT~~gG---~l~alD~~tG~-~~w~~~~~~l~~~~sspvvD~-d-G~IWVGT~~gGL  294 (626)
                          ...+.++....+|  .+..++ .++   .+..+|..++. ......... ...+.++...+ + ..|..|+.++.|
T Consensus       210 ~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~~~~i~~~d~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~l~s~~~dg~v  287 (416)
T 2pm9_A          210 NSGIKQQLSVVEWHPKNSTRVATAT-GSDNDPSILIWDLRNANTPLQTLNQGH-QKGILSLDWCHQDEHLLLSSGRDNTV  287 (416)
T ss_dssp             SSCCCCCEEEEEECSSCTTEEEEEE-CCSSSCCCCEEETTSTTSCSBCCCSCC-SSCEEEEEECSSCSSCEEEEESSSEE
T ss_pred             ccccCCceEEEEECCCCCCEEEEEE-CCCCCceEEEEeCCCCCCCcEEeecCc-cCceeEEEeCCCCCCeEEEEeCCCCE
Confidence                2345666666665  455555 344   77778877653 322222011 12345566654 4 467778888999


Q ss_pred             EEEcCC-CCEEE
Q 006913          295 YSFSPS-GVLNK  305 (626)
Q Consensus       295 y~~d~~-g~~~~  305 (626)
                      ..+|.. ++...
T Consensus       288 ~~wd~~~~~~~~  299 (416)
T 2pm9_A          288 LLWNPESAEQLS  299 (416)
T ss_dssp             EEECSSSCCEEE
T ss_pred             EEeeCCCCccce
Confidence            999964 55444

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=95.75  E-value=2.4  Score=44.35  Aligned_cols=237  Identities=11%  Similarity=0.004  Sum_probs=124.0

Q ss_pred             eeEEeeCC-EEEEEe-----------CCcEEEEcC-CCCEEEEEeCC-CC----CCcccCeEEecCCe-EEEEE---CCe
Q 006913           41 KPLIGEDG-KIYACS-----------EKTLFAFES-NGTIAWSLDLD-FT----CNIGTAPVHGGTGE-VYIVA---ENR   98 (626)
Q Consensus        41 spvid~dG-~IwIgS-----------dggL~a~d~-~G~~~W~~~~~-~~----~~i~~sp~iD~dG~-IwVgT---~gg   98 (626)
                      .+.+..|| .+|++.           ++.+..+|. +++..-.+..+ ..    ......+.++.+|+ ||++.   .+.
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            66666666 688875           245889998 67665445443 10    01122456677766 77775   257


Q ss_pred             EEEEECCCCccccceeEEE-ecCCCCCCCCCCeeEEEEEEcCCeEEEE-EcCCeEEEEeCCCcEEEEECCcccccccccc
Q 006913           99 VLKVDLLKIGTSESATQVF-YGTGSGKGGTGAIAGIAVSTSSSSVYIN-VKGRALFAFMTHGQLLWSAGPVLDQLGYRQG  176 (626)
Q Consensus        99 L~~id~~~~~~~~~~~~~~-~~~~~~~~~~~~~I~s~~~d~dG~LwIg-T~~gGL~a~d~~G~~~w~~~~~~~~~~~~~~  176 (626)
                      |..+| .+++.     .-. ...       ...+  .....+.+.|+. ..++.+..++.+|+..+....  .. .    
T Consensus       150 v~viD-~t~~~-----~~~~i~~-------~~~~--~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~--~~-~----  207 (373)
T 2mad_H          150 VGLVV-QGGSS-----DDQLLSS-------PTCY--HIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLV--GA-M----  207 (373)
T ss_pred             EEEEE-CCCCE-----EeEEcCC-------CceE--EEEeCCCceEEEEcCCCCEEEEECCCcEEEEEec--cc-c----
Confidence            99999 87632     111 110       0111  112223344443 334556677765555433200  00 0    


Q ss_pred             cccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcC----C-----C--CCcceeeeeecC-CeEEEE
Q 006913          177 CTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDL----S-----S--FDKAFTLTPGNN-GYLYVT  244 (626)
Q Consensus       177 ~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~----~-----s--~~~v~sI~~D~d-G~LwVG  244 (626)
                       .  .....+...+.....++.+|+.+..+.++.+|..++........    .     .  ......+..+.| ++|||+
T Consensus       208 -~--~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~  284 (373)
T 2mad_H          208 -L--TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLL  284 (373)
T ss_pred             -c--cCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEE
Confidence             0  00011111222222246666666777899999876533221111    0     0  011112344444 589997


Q ss_pred             EcC---------CCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCe--EEEEE-cCCeEEEEcCC-CCEEE
Q 006913          245 IPV---------RALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGW--ISVGS-LDGLLYSFSPS-GVLNK  305 (626)
Q Consensus       245 T~~---------gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~--IWVGT-~~gGLy~~d~~-g~~~~  305 (626)
                      ...         .+.+..+|..+++..-....+.   ....+.+++||.  +|++. .++.|..+|.. ++...
T Consensus       285 ~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~  355 (373)
T 2mad_H          285 TSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQ  355 (373)
T ss_pred             eccCCcccccCCCCeEEEEECCCCEEEEEEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEe
Confidence            531         2478899999998876555542   234567777776  55555 36789999975 55543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=95.65  E-value=2  Score=42.69  Aligned_cols=197  Identities=5%  Similarity=-0.113  Sum_probs=107.0

Q ss_pred             ccCeEEecCCeEEEE-E-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC
Q 006913           80 GTAPVHGGTGEVYIV-A-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH  157 (626)
Q Consensus        80 ~~sp~iD~dG~IwVg-T-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~  157 (626)
                      +.++....+|.+.+. . ++.|...|..++..     ...+..     ....+........+..|..|+.++.|..+|..
T Consensus        16 V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~-----~~~~~~-----~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~   85 (304)
T 2ynn_A           16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQVE-----VRSIQV-----TETPVRAGKFIARKNWIIVGSDDFRIRVFNYN   85 (304)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTTTEE-----EEEEEC-----CSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred             eEEEEECCCCCEEEEEcCCCcEEEEECCCCce-----eEEeec-----cCCcEEEEEEeCCCCEEEEECCCCEEEEEECC
Confidence            344555667765554 3 67888888877531     111111     11222233333445567778888889899975


Q ss_pred             -CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeee
Q 006913          158 -GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPG  236 (626)
Q Consensus       158 -G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D  236 (626)
                       |+.+..+..            +   ... ..++...+.+..|..|+.++.|..+|.+++........+....+.++...
T Consensus        86 ~~~~~~~~~~------------h---~~~-v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~  149 (304)
T 2ynn_A           86 TGEKVVDFEA------------H---PDY-IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFN  149 (304)
T ss_dssp             TCCEEEEEEC------------C---SSC-EEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEEC
T ss_pred             CCcEEEEEeC------------C---CCc-EEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEEC
Confidence             776554310            0   011 23344544244567777888899999877633222111112345666655


Q ss_pred             c-CCe-EEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEe--eC-CeEEEEEcCCeEEEEcCC-CCEE
Q 006913          237 N-NGY-LYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVD--SN-GWISVGSLDGLLYSFSPS-GVLN  304 (626)
Q Consensus       237 ~-dG~-LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD--~d-G~IWVGT~~gGLy~~d~~-g~~~  304 (626)
                      . ++. |..|. .++.+...|..++.......... ..........  .+ ..|..|+.++.|..+|.. ++..
T Consensus       150 p~~~~~l~sgs-~D~~v~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~  221 (304)
T 2ynn_A          150 PKDPSTFASGC-LDRTVKVWSLGQSTPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV  221 (304)
T ss_dssp             TTCTTEEEEEE-TTSEEEEEETTCSSCSEEEECCC-TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEE
T ss_pred             CCCCCEEEEEe-CCCeEEEEECCCCCccceeccCC-cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccc
Confidence            4 444 55555 45788888876665443332221 1112222222  23 367788889999999975 4433

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=95.64  E-value=2.7  Score=44.18  Aligned_cols=211  Identities=13%  Similarity=0.121  Sum_probs=110.6

Q ss_pred             CcEEEEcCCCCEEEEEeCCCCCCcccCeEEecCCe-EEEEE-CC---eEEEEECCCCccccceeEEEecCCCCCCCCCCe
Q 006913           56 KTLFAFESNGTIAWSLDLDFTCNIGTAPVHGGTGE-VYIVA-EN---RVLKVDLLKIGTSESATQVFYGTGSGKGGTGAI  130 (626)
Q Consensus        56 ggL~a~d~~G~~~W~~~~~~~~~i~~sp~iD~dG~-IwVgT-~g---gL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (626)
                      +.|+.+|.+|.....+...  ...+.++....+|+ |..++ ++   .|+.+|..++..     .....      . ...
T Consensus       159 ~~i~i~d~~g~~~~~l~~~--~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~-----~~l~~------~-~~~  224 (415)
T 2hqs_A          159 YELRVSDYDGYNQFVVHRS--PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-----RQVAS------F-PRH  224 (415)
T ss_dssp             EEEEEEETTSCSCEEEEEE--SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-----EEEEC------C-SSC
T ss_pred             ceEEEEcCCCCCCEEEeCC--CCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE-----EEeec------C-CCc
Confidence            3577777644211111111  12344566677776 44444 43   789999887631     11111      1 113


Q ss_pred             eEEEEEEcCCe-EEEE-EcC--CeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCe-EEEEcC
Q 006913          131 AGIAVSTSSSS-VYIN-VKG--RALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGS-IYISNT  204 (626)
Q Consensus       131 I~s~~~d~dG~-LwIg-T~~--gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~-LwIGT~  204 (626)
                      +..+....+|+ |.+. +.+  ..|+.+|.. ++.. ....            ..   . ....+...+ +|. |++++.
T Consensus       225 ~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l~~------------~~---~-~~~~~~~sp-dg~~l~~~s~  286 (415)
T 2hqs_A          225 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTD------------GR---S-NNTEPTWFP-DSQNLAFTSD  286 (415)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECCC------------CS---S-CEEEEEECT-TSSEEEEEEC
T ss_pred             ccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eCcC------------CC---C-cccceEECC-CCCEEEEEEC
Confidence            44444455665 5533 332  348889975 5542 2100            00   0 123345554 444 666654


Q ss_pred             CC---eEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCe-EEEEEcC--CCEEEEEECCCCcEEEEEecCCCCCceeeEE
Q 006913          205 QG---ELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGY-LYVTIPV--RALVLALDTSSGNILWHKSVGPLGSAEYAPV  278 (626)
Q Consensus       205 ~G---gL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~-LwVGT~~--gG~l~alD~~tG~~~w~~~~~~l~~~~sspv  278 (626)
                      .+   .|+.+|.++++......  ....+..+....||+ |+++...  ...++.+|..+++..... ..   .....+.
T Consensus       287 ~~g~~~i~~~d~~~~~~~~l~~--~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~-~~---~~~~~~~  360 (415)
T 2hqs_A          287 QAGRPQVYKVNINGGAPQRITW--EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLS-ST---FLDETPS  360 (415)
T ss_dssp             TTSSCEEEEEETTSSCCEECCC--SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECC-CS---SSCEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEec--CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEec-CC---CCcCCeE
Confidence            33   68999998876533211  112344555666775 5555433  247888998888764211 11   1345577


Q ss_pred             EeeCCe-EEEEEcCC---eEEEEcCCCCEE
Q 006913          279 VDSNGW-ISVGSLDG---LLYSFSPSGVLN  304 (626)
Q Consensus       279 vD~dG~-IWVGT~~g---GLy~~d~~g~~~  304 (626)
                      ..++|. |++++.++   .|+.+|.+++..
T Consensus       361 ~spdg~~l~~~s~~~~~~~l~~~d~~g~~~  390 (415)
T 2hqs_A          361 LAPNGTMVIYSSSQGMGSVLNLVSTDGRFK  390 (415)
T ss_dssp             ECTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred             EcCCCCEEEEEEcCCCccEEEEEECCCCcE
Confidence            777775 66666555   588888765443

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=95.59  E-value=2  Score=42.37  Aligned_cols=226  Identities=11%  Similarity=0.018  Sum_probs=113.4

Q ss_pred             eEEeeCCEEEE-Ee-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCe-EEEEE-CCeEEEEECCCCccccceeEE
Q 006913           42 PLIGEDGKIYA-CS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGE-VYIVA-ENRVLKVDLLKIGTSESATQV  116 (626)
Q Consensus        42 pvid~dG~IwI-gS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~-IwVgT-~ggL~~id~~~~~~~~~~~~~  116 (626)
                      .....+|.+.+ ++ ++.+..++. .+..........  ..........++. +..++ ++.+..+|.....      ..
T Consensus        92 ~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~------~~  163 (340)
T 4aow_A           92 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHT--KDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC------KY  163 (340)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS--SCEEEEEECTTSSCEEEEETTSCEEEECTTSCE------EE
T ss_pred             EEECCCCCEEEEEcccccceEEeecccceeeeecCCC--CceeEEEEeecCccceeecCCCeEEEEEeCCCc------eE
Confidence            33445565444 44 455666666 333332222211  1122223334444 44455 6777777765531      11


Q ss_pred             EecCCCCCCCCCCeeEEEEEE--cCCeE-EEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEE
Q 006913          117 FYGTGSGKGGTGAIAGIAVST--SSSSV-YINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVI  192 (626)
Q Consensus       117 ~~~~~~~~~~~~~~I~s~~~d--~dG~L-wIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspvi  192 (626)
                      .....   .. ...+......  ..+.+ ..++.++-+..+|.. ++....+..            +   ...+ .++..
T Consensus       164 ~~~~~---~~-~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~------------h---~~~v-~~~~~  223 (340)
T 4aow_A          164 TVQDE---SH-SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIG------------H---TGYL-NTVTV  223 (340)
T ss_dssp             EECSS---SC-SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECC------------C---SSCE-EEEEE
T ss_pred             EEEec---cc-cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecC------------C---CCcE-EEEEE
Confidence            11111   11 1223322222  22333 345566778888875 655443310            0   0112 33445


Q ss_pred             EcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCC---
Q 006913          193 DQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGP---  269 (626)
Q Consensus       193 D~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~---  269 (626)
                      .+.+..|..|+.++.|..+|.++++........  ..+..+....++.+.++.. ++.+..+|..++..........   
T Consensus       224 s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~  300 (340)
T 4aow_A          224 SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG--DIINALCFSPNRYWLCAAT-GPSIKIWDLEGKIIVDELKQEVIST  300 (340)
T ss_dssp             CTTSSEEEEEETTCEEEEEETTTTEEEEEEECS--SCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCC----
T ss_pred             CCCCCEEEEEeCCCeEEEEEeccCceeeeecCC--ceEEeeecCCCCceeeccC-CCEEEEEECCCCeEEEeccccceee
Confidence            542345667778889999999988766543322  2345555666777777774 5688888987777665442211   


Q ss_pred             ----CCCceeeEEEeeCCe-EEEEEcCCeEEEEc
Q 006913          270 ----LGSAEYAPVVDSNGW-ISVGSLDGLLYSFS  298 (626)
Q Consensus       270 ----l~~~~sspvvD~dG~-IWVGT~~gGLy~~d  298 (626)
                          ....+.++...++|. |..|+.++.|..++
T Consensus       301 ~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~  334 (340)
T 4aow_A          301 SSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ  334 (340)
T ss_dssp             ---CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             eccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence                011234455555553 45556666666665

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=95.59  E-value=2.6  Score=43.62  Aligned_cols=201  Identities=13%  Similarity=0.021  Sum_probs=101.8

Q ss_pred             eeEEeeCCEEEE-Ee-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEE-EE-CCeEEEEECCCCccccceeE
Q 006913           41 KPLIGEDGKIYA-CS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYI-VA-ENRVLKVDLLKIGTSESATQ  115 (626)
Q Consensus        41 spvid~dG~IwI-gS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwV-gT-~ggL~~id~~~~~~~~~~~~  115 (626)
                      +.....+|...+ |+ ++.+..+|. +++....+.. .. ..+.++....+|...+ ++ ++.|...|..++..     .
T Consensus       128 ~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~-h~-~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~-----~  200 (393)
T 1erj_A          128 SVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQG-HE-QDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC-----S  200 (393)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CS-SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-----E
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc-CC-CCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee-----E
Confidence            444445665444 45 567888887 6655433321 11 2234555556666444 44 77888889877531     2


Q ss_pred             EEecCCCCCCCCCCeeEEEEEEc-CC-eEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEE
Q 006913          116 VFYGTGSGKGGTGAIAGIAVSTS-SS-SVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVI  192 (626)
Q Consensus       116 ~~~~~~~~~~~~~~~I~s~~~d~-dG-~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspvi  192 (626)
                      ..+..      .. .+....... ++ .|..|+.++.+..+|.. ++.........     ..  ... .... ..++..
T Consensus       201 ~~~~~------~~-~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~-----~~--~~~-h~~~-v~~v~~  264 (393)
T 1erj_A          201 LTLSI------ED-GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSEN-----ES--GTG-HKDS-VYSVVF  264 (393)
T ss_dssp             EEEEC------SS-CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC-------------CC-CSSC-EEEEEE
T ss_pred             EEEEc------CC-CcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccc-----cC--CCC-CCCC-EEEEEE
Confidence            22211      11 223333322 44 46667778888899975 66554331100     00  000 0111 233455


Q ss_pred             EcCCCeEEEEcCCCeEEEEeCCCCeEEEEE----------c-CCCCCcceeeeeecCCe-EEEEEcCCCEEEEEECCCCc
Q 006913          193 DQCEGSIYISNTQGELYSLSAHSPYFNWIQ----------D-LSSFDKAFTLTPGNNGY-LYVTIPVRALVLALDTSSGN  260 (626)
Q Consensus       193 D~~dG~LwIGT~~GgL~~ld~~tg~~~w~~----------~-~~s~~~v~sI~~D~dG~-LwVGT~~gG~l~alD~~tG~  260 (626)
                      .+.+..|..|+.++.|..+|.++.......          . .+....+.+++...+|. |..|+ .++.+...|..+++
T Consensus       265 ~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs-~D~~v~iwd~~~~~  343 (393)
T 1erj_A          265 TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS-KDRGVLFWDKKSGN  343 (393)
T ss_dssp             CTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE-TTSEEEEEETTTCC
T ss_pred             CCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEe-CCCeEEEEECCCCe
Confidence            542445777777888988888654321110          0 01112355566655664 44555 45788889988888


Q ss_pred             EEEEE
Q 006913          261 ILWHK  265 (626)
Q Consensus       261 ~~w~~  265 (626)
                      .....
T Consensus       344 ~~~~l  348 (393)
T 1erj_A          344 PLLML  348 (393)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            76543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=95.43  E-value=1.4  Score=43.38  Aligned_cols=112  Identities=10%  Similarity=0.049  Sum_probs=64.1

Q ss_pred             eEEEcCCCeEEEEcCC-CeEEEEeCC--CCeEEEEEcCCCCCcceeeeeecCCe-EEEEEcCCCEEEEEECCCCc---EE
Q 006913          190 PVIDQCEGSIYISNTQ-GELYSLSAH--SPYFNWIQDLSSFDKAFTLTPGNNGY-LYVTIPVRALVLALDTSSGN---IL  262 (626)
Q Consensus       190 pviD~~dG~LwIGT~~-GgL~~ld~~--tg~~~w~~~~~s~~~v~sI~~D~dG~-LwVGT~~gG~l~alD~~tG~---~~  262 (626)
                      +..++.+..||++..+ +.|..++.+  ++...-.........+..++.+.+|+ ||++...++.+..+|..+|.   ..
T Consensus        43 ~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~  122 (343)
T 1ri6_A           43 MVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV  122 (343)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEE
T ss_pred             EEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccc
Confidence            4555423448888775 778876665  66544322211112345566677775 88877556677777753333   22


Q ss_pred             EEEecCCCCCceeeEEEeeCC-eEEEEE-cCCeEEEEcCC--CCEE
Q 006913          263 WHKSVGPLGSAEYAPVVDSNG-WISVGS-LDGLLYSFSPS--GVLN  304 (626)
Q Consensus       263 w~~~~~~l~~~~sspvvD~dG-~IWVGT-~~gGLy~~d~~--g~~~  304 (626)
                      ......   .....+..+++| .||++. .++.|+.++..  ++..
T Consensus       123 ~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~  165 (343)
T 1ri6_A          123 DVVEGL---DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV  165 (343)
T ss_dssp             EEECCC---TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred             ccccCC---CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCcee
Confidence            222211   123446677676 588887 67888888853  5443

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=95.17  E-value=2.8  Score=41.55  Aligned_cols=264  Identities=8%  Similarity=-0.077  Sum_probs=129.2

Q ss_pred             CCEEEEEe-CCcEEEEcC-CCCEEEEEe---CCCCCCcccCeEEecC----CeE-EEEE-CCeEEEEECCCCccccceeE
Q 006913           47 DGKIYACS-EKTLFAFES-NGTIAWSLD---LDFTCNIGTAPVHGGT----GEV-YIVA-ENRVLKVDLLKIGTSESATQ  115 (626)
Q Consensus        47 dG~IwIgS-dggL~a~d~-~G~~~W~~~---~~~~~~i~~sp~iD~d----G~I-wVgT-~ggL~~id~~~~~~~~~~~~  115 (626)
                      +..++++. ++.+..++. ++.....+.   .......+.++....+    |.+ ..+. ++.|..+|..++..     .
T Consensus        34 ~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-----~  108 (366)
T 3k26_A           34 DPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQC-----I  108 (366)
T ss_dssp             SCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCE-----E
T ss_pred             CceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceE-----e
Confidence            34466654 667788886 454332221   1100112333444444    444 4445 67888889876531     2


Q ss_pred             EEecCCCCCCCCCCeeEEEEEE--cCCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEE
Q 006913          116 VFYGTGSGKGGTGAIAGIAVST--SSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVI  192 (626)
Q Consensus       116 ~~~~~~~~~~~~~~~I~s~~~d--~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspvi  192 (626)
                      ..+..     . ...+..+...  .+..|..++.++.|..+|.. ++....+..    +   .  ..   ... ..++..
T Consensus       109 ~~~~~-----~-~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~---~--~~---~~~-v~~~~~  169 (366)
T 3k26_A          109 KHYVG-----H-GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG----V---E--GH---RDE-VLSADY  169 (366)
T ss_dssp             EEEES-----C-CSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECS----T---T--SC---SSC-EEEEEE
T ss_pred             eeecC-----C-CCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecc----c---c--cc---cCc-eeEEEE
Confidence            22211     1 1234444333  34456777778889999975 665544310    0   0  00   011 233444


Q ss_pred             EcCCCeEEEEcCCCeEEEEeCCCCeEEEEEc---------------------------CCCCCcceeeeeecCCeEEEEE
Q 006913          193 DQCEGSIYISNTQGELYSLSAHSPYFNWIQD---------------------------LSSFDKAFTLTPGNNGYLYVTI  245 (626)
Q Consensus       193 D~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~---------------------------~~s~~~v~sI~~D~dG~LwVGT  245 (626)
                      .+.+..|..+..++.|..+|.++++......                           ......+.++... ...|..++
T Consensus       170 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~  248 (366)
T 3k26_A          170 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-GDLILSKS  248 (366)
T ss_dssp             CTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-TTEEEEEC
T ss_pred             CCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc-CCEEEEEe
Confidence            4424567778788889999988754321000                           0011224445444 34555555


Q ss_pred             cCCCEEEEEECCCCcE--------------EEEEecCCCCCceeeEEEeeC--C-eEEEEEcCCeEEEEcCC-CC----E
Q 006913          246 PVRALVLALDTSSGNI--------------LWHKSVGPLGSAEYAPVVDSN--G-WISVGSLDGLLYSFSPS-GV----L  303 (626)
Q Consensus       246 ~~gG~l~alD~~tG~~--------------~w~~~~~~l~~~~sspvvD~d--G-~IWVGT~~gGLy~~d~~-g~----~  303 (626)
                       .++.+..+|..++..              ........  ..+..+...++  | .|..|+.++.|+.+|.. ++    .
T Consensus       249 -~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  325 (366)
T 3k26_A          249 -CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ--CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAK  325 (366)
T ss_dssp             -SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS--CCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCE
T ss_pred             -cCCEEEEEeCCCccccccccccCCcchheeccccccC--CcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcccc
Confidence             456777777666532              22221110  11122223333  4 56778888889999865 32    1


Q ss_pred             EEEeeccCCCCccccCceEEEEEEecCCcEEEEEeeecCeeE
Q 006913          304 NKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLMVVGQFS  345 (626)
Q Consensus       304 ~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~t~~Ggl~  345 (626)
                      .....   ..   .....|.++....+|.+. .+++..|.+.
T Consensus       326 ~~~~~---~~---~~~~~v~~~~~s~~~~~l-~s~~~dg~i~  360 (366)
T 3k26_A          326 CTTLT---HH---KCGAAIRQTSFSRDSSIL-IAVCDDASIW  360 (366)
T ss_dssp             EEEEC---CT---TCCSCEEEEEECTTSSEE-EEEETTSEEE
T ss_pred             ceEEc---cc---ccCCceEEEEeCCCCCeE-EEEeCCCEEE
Confidence            11111   10   012345666666677654 4444444443

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=95.15  E-value=3.1  Score=41.93  Aligned_cols=189  Identities=9%  Similarity=-0.066  Sum_probs=96.0

Q ss_pred             eEEeeCCEEEE-Ee-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEE-EE-CCeEEEEECCCCccccceeEE
Q 006913           42 PLIGEDGKIYA-CS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYI-VA-ENRVLKVDLLKIGTSESATQV  116 (626)
Q Consensus        42 pvid~dG~IwI-gS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwV-gT-~ggL~~id~~~~~~~~~~~~~  116 (626)
                      .....++.+.+ |+ ++.+..+|. +++....+....  ..+.++....+|+..+ +. ++.|..+|.....      ..
T Consensus        82 ~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~--~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~------~~  153 (343)
T 2xzm_R           82 LALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQ--SEVYSVAFSPDNRQILSAGAEREIKLWNILGEC------KF  153 (343)
T ss_dssp             EEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCC--SCEEEEEECSSTTEEEEEETTSCEEEEESSSCE------EE
T ss_pred             EEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC--CcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc------ee
Confidence            33434555444 45 567788887 777654443211  2344555666776444 44 7788888876431      11


Q ss_pred             EecCCCCCCCCCCeeEEEEEEcC-----------CeEEEEEcCCeEEEEeCCCcEEEEECCcccccccccccccCCCCCc
Q 006913          117 FYGTGSGKGGTGAIAGIAVSTSS-----------SSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCY  185 (626)
Q Consensus       117 ~~~~~~~~~~~~~~I~s~~~d~d-----------G~LwIgT~~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~  185 (626)
                      .....  ... ...+..+....+           ..+..++.++.|..+|.+++....+..            +.   ..
T Consensus       154 ~~~~~--~~~-~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------------h~---~~  215 (343)
T 2xzm_R          154 SSAEK--ENH-SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKA------------HE---SN  215 (343)
T ss_dssp             ECCTT--TSC-SSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEEC------------CS---SC
T ss_pred             eeecc--cCC-CceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcC------------cc---cc
Confidence            11100  011 112333222222           346667777888888866655433200            00   11


Q ss_pred             cccceEEEcCCCeEEEEcCCCeEEEEeCCC-CeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCc
Q 006913          186 FTSVPVIDQCEGSIYISNTQGELYSLSAHS-PYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGN  260 (626)
Q Consensus       186 i~sspviD~~dG~LwIGT~~GgL~~ld~~t-g~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~  260 (626)
                       ..++...+.+..|..|+.++.|..+|... +........  ...+.+++...++.+.++..+ +.+..+|..++.
T Consensus       216 -v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~--~~~v~~v~~sp~~~~la~~~d-~~v~iw~~~~~~  287 (343)
T 2xzm_R          216 -VNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDA--GSTINQIAFNPKLQWVAVGTD-QGVKIFNLMTQS  287 (343)
T ss_dssp             -EEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEEC--SSCEEEEEECSSSCEEEEEES-SCEEEEESSSCC
T ss_pred             -ceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecC--CCcEEEEEECCCCCEEEEECC-CCEEEEEeCCCC
Confidence             13344554234566777788899998843 222211111  123556666667766555433 456667766554

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=95.13  E-value=3  Score=41.61  Aligned_cols=194  Identities=7%  Similarity=-0.057  Sum_probs=97.9

Q ss_pred             ccCeEEecCCeEEE-EE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEE-Ec--CCeEEEEEcCCeEEEE
Q 006913           80 GTAPVHGGTGEVYI-VA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVS-TS--SSSVYINVKGRALFAF  154 (626)
Q Consensus        80 ~~sp~iD~dG~IwV-gT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~-d~--dG~LwIgT~~gGL~a~  154 (626)
                      +.++....+|.+.+ ++ ++.|..++......   .....+.     .... .|..+.. ..  +..|..++.++-|..+
T Consensus        14 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~---~~~~~~~-----~h~~-~v~~~~~~~~~~~~~l~s~~~dg~v~iw   84 (379)
T 3jrp_A           14 IHDAVLDYYGKRLATCSSDKTIKIFEVEGETH---KLIDTLT-----GHEG-PVWRVDWAHPKFGTILASCSYDGKVLIW   84 (379)
T ss_dssp             EEEEEECSSSSEEEEEETTSCEEEEEEETTEE---EEEEEEC-----CCSS-CEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred             EEEEEEcCCCCEEEEEECCCcEEEEecCCCcc---eeeeEec-----CCCC-cEEEEEeCCCCCCCEEEEeccCCEEEEE
Confidence            33445556666444 44 66677777653210   0111111     1112 3333332 22  4567777877888888


Q ss_pred             eCC-Cc--EEEEECCcccccccccccccCCCCCccccceEEEcC--CCeEEEEcCCCeEEEEeCCCCeE--EEEEcCCCC
Q 006913          155 MTH-GQ--LLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQC--EGSIYISNTQGELYSLSAHSPYF--NWIQDLSSF  227 (626)
Q Consensus       155 d~~-G~--~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~--dG~LwIGT~~GgL~~ld~~tg~~--~w~~~~~s~  227 (626)
                      |.. ++  .......            +   ... ..++...+.  +..|..++.++.|..+|.+++..  ..... ...
T Consensus        85 d~~~~~~~~~~~~~~------------~---~~~-v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~  147 (379)
T 3jrp_A           85 KEENGRWSQIAVHAV------------H---SAS-VNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID-AHA  147 (379)
T ss_dssp             EEETTEEEEEEEECC------------C---SSC-EEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEE-CCT
T ss_pred             EcCCCceeEeeeecC------------C---Ccc-eEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEec-CCC
Confidence            864 54  2222100            0   011 133444432  34577888889999999887632  11111 111


Q ss_pred             Ccceeeeeec-------------CC-eEEEEEcCCCEEEEEECCCCcEEEEE--ecCCCCCceeeEEEeeC---C-eEEE
Q 006913          228 DKAFTLTPGN-------------NG-YLYVTIPVRALVLALDTSSGNILWHK--SVGPLGSAEYAPVVDSN---G-WISV  287 (626)
Q Consensus       228 ~~v~sI~~D~-------------dG-~LwVGT~~gG~l~alD~~tG~~~w~~--~~~~l~~~~sspvvD~d---G-~IWV  287 (626)
                      ..+.++....             ++ .+.+++ .++.+..+|..++...+..  ........+.++...++   + .|..
T Consensus       148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s  226 (379)
T 3jrp_A          148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS  226 (379)
T ss_dssp             TCEEEEEECCCC----------CTTCEEEEEE-TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred             CceEEEEEcCccccccccccCCCCCCEEEEEe-CCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEE
Confidence            2344444443             35 455555 4567777776555433221  11111123555677766   4 4666


Q ss_pred             EEcCCeEEEEcCC
Q 006913          288 GSLDGLLYSFSPS  300 (626)
Q Consensus       288 GT~~gGLy~~d~~  300 (626)
                      |+.++.|..++..
T Consensus       227 ~~~dg~i~iwd~~  239 (379)
T 3jrp_A          227 VSQDRTCIIWTQD  239 (379)
T ss_dssp             EETTSCEEEEEES
T ss_pred             EeCCCEEEEEeCC
Confidence            7778888888854

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=95.08  E-value=4.2  Score=43.06  Aligned_cols=72  Identities=11%  Similarity=0.087  Sum_probs=50.1

Q ss_pred             ceeeeeEEeeCCEEEEEeCC-----------------cEEEEcC-CC--CEEEEEeCCCC----CCcccCeEEe-c----
Q 006913           37 FRLSKPLIGEDGKIYACSEK-----------------TLFAFES-NG--TIAWSLDLDFT----CNIGTAPVHG-G----   87 (626)
Q Consensus        37 ~~~Sspvid~dG~IwIgSdg-----------------gL~a~d~-~G--~~~W~~~~~~~----~~i~~sp~iD-~----   87 (626)
                      ...-++.+|..|+||+-..|                 .|+++|. ++  +++..+.++..    ......+.+| .    
T Consensus        87 vsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~  166 (381)
T 3q6k_A           87 TSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKG  166 (381)
T ss_dssp             SCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTT
T ss_pred             EEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCC
Confidence            33445678889999995311                 3889998 77  77766666421    1235567777 2    


Q ss_pred             ---CCeEEEEE--CCeEEEEECCCCc
Q 006913           88 ---TGEVYIVA--ENRVLKVDLLKIG  108 (626)
Q Consensus        88 ---dG~IwVgT--~ggL~~id~~~~~  108 (626)
                         ++.+||+.  ..||.++|..+++
T Consensus       167 ~c~~~~aYItD~~~~gLIVydl~~~~  192 (381)
T 3q6k_A          167 DCSETFVYITNFLRGALFIYDHKKQD  192 (381)
T ss_dssp             TSCSEEEEEEETTTTEEEEEETTTTE
T ss_pred             CCCccEEEEEcCCCCcEEEEECCCCc
Confidence               46689886  6899999998874

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=94.91  E-value=0.79  Score=48.01  Aligned_cols=112  Identities=7%  Similarity=0.097  Sum_probs=68.2

Q ss_pred             eEEEcCCCeEEEEcC-CCeEEEEeCCCCeEEEEEcCC-----CCCcceeeeeec----CCeEEEEEc--CCCEEEEEECC
Q 006913          190 PVIDQCEGSIYISNT-QGELYSLSAHSPYFNWIQDLS-----SFDKAFTLTPGN----NGYLYVTIP--VRALVLALDTS  257 (626)
Q Consensus       190 pviD~~dG~LwIGT~-~GgL~~ld~~tg~~~w~~~~~-----s~~~v~sI~~D~----dG~LwVGT~--~gG~l~alD~~  257 (626)
                      ++... +|.|||+.. .|.|++++.+++...-.....     .......++.+.    +|.||+...  ....+..+...
T Consensus        37 ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~  115 (347)
T 3das_A           37 LAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYD  115 (347)
T ss_dssp             EEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBC
T ss_pred             EEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeC
Confidence            55665 889999988 788999988766654332221     122345566653    689999631  23467777543


Q ss_pred             CC----------cEEEEEecCCCCCceeeEEEeeCCeEEEEEc--------------CCeEEEEcCCCC
Q 006913          258 SG----------NILWHKSVGPLGSAEYAPVVDSNGWISVGSL--------------DGLLYSFSPSGV  302 (626)
Q Consensus       258 tG----------~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~--------------~gGLy~~d~~g~  302 (626)
                      .+          +.++........+....++++++|.|||++.              .+.|++++++|+
T Consensus       116 ~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~  184 (347)
T 3das_A          116 EKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE  184 (347)
T ss_dssp             TTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred             CCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence            31          1222211111112345688899999999863              478888888765

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=94.90  E-value=6  Score=43.95  Aligned_cols=193  Identities=9%  Similarity=0.010  Sum_probs=109.0

Q ss_pred             ecCCeEEEEE--CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCC-eEEEEEcCCeEEEEeC---CCc
Q 006913           86 GGTGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSS-SVYINVKGRALFAFMT---HGQ  159 (626)
Q Consensus        86 D~dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG-~LwIgT~~gGL~a~d~---~G~  159 (626)
                      |..+.+|+..  ++.|..+|..+++.     ...+..       +.....+....+| .+|+++.++.|..+|.   +++
T Consensus       164 d~~~~~~V~~~~~~~V~viD~~t~~v-----~~~i~~-------g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~  231 (567)
T 1qks_A          164 DLENLFSVTLRDAGQIALIDGSTYEI-----KTVLDT-------GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT  231 (567)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCE-----EEEEEC-------SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC
T ss_pred             CCCceEEEEeCCCCeEEEEECCCCeE-----EEEEeC-------CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc
Confidence            4445677765  58899999988642     222211       1122333444454 6899988889999997   466


Q ss_pred             EEEEECCcccccccccccccCCCCCccccceEEE----cCCCeEEEEcC-CCeEEEEeCCCCeEEEEEcCCC--C-----
Q 006913          160 LLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVID----QCEGSIYISNT-QGELYSLSAHSPYFNWIQDLSS--F-----  227 (626)
Q Consensus       160 ~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD----~~dG~LwIGT~-~GgL~~ld~~tg~~~w~~~~~s--~-----  227 (626)
                      .+.....     +           .. ...+.+.    ..+..+|++++ .+.+..+|..+.+.........  .     
T Consensus       232 ~v~~i~~-----G-----------~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~  294 (567)
T 1qks_A          232 TVAEIKI-----G-----------SE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEY  294 (567)
T ss_dssp             EEEEEEC-----C-----------SE-EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCE
T ss_pred             EeEEEec-----C-----------CC-CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccc
Confidence            6544300     0           00 1223444    22557999876 4788999999988876654321  1     


Q ss_pred             ---CcceeeeeecCC-eEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCe-EEEEE-cCCeEEEEcCC-
Q 006913          228 ---DKAFTLTPGNNG-YLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGW-ISVGS-LDGLLYSFSPS-  300 (626)
Q Consensus       228 ---~~v~sI~~D~dG-~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~-IWVGT-~~gGLy~~d~~-  300 (626)
                         ..+..++...++ .+++.....|.+..+|..+.+..-...+.. +........+++|+ +|++. ..+.|..+|.. 
T Consensus       295 ~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~-~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t  373 (567)
T 1qks_A          295 HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISA-ERFLHDGGLDGSHRYFITAANARNKLVVIDTKE  373 (567)
T ss_dssp             ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEEC-CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred             cCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeec-cccccCceECCCCCEEEEEeCCCCeEEEEECCC
Confidence               123344444444 344444445677777766544322111111 12334456777775 56655 35789999975 


Q ss_pred             CCEEEEee
Q 006913          301 GVLNKFSK  308 (626)
Q Consensus       301 g~~~~~~~  308 (626)
                      +++.....
T Consensus       374 ~kl~~~i~  381 (567)
T 1qks_A          374 GKLVAIED  381 (567)
T ss_dssp             TEEEEEEE
T ss_pred             CcEEEEEe
Confidence            66555443

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=94.79  E-value=4.7  Score=42.17  Aligned_cols=228  Identities=10%  Similarity=-0.053  Sum_probs=107.3

Q ss_pred             CC-EEEEEe-CCcEEEEcCCCCEEEEEeCCCC-CCcccCeEEecCCeEEE-EE-CCeEEEEECCCCccccceeEEEecCC
Q 006913           47 DG-KIYACS-EKTLFAFESNGTIAWSLDLDFT-CNIGTAPVHGGTGEVYI-VA-ENRVLKVDLLKIGTSESATQVFYGTG  121 (626)
Q Consensus        47 dG-~IwIgS-dggL~a~d~~G~~~W~~~~~~~-~~i~~sp~iD~dG~IwV-gT-~ggL~~id~~~~~~~~~~~~~~~~~~  121 (626)
                      ++ .|+.|+ ++.+..+|..+.....+..... .....++....++.+.+ |+ ++.|..+|..+...      ..+   
T Consensus       176 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~------~~~---  246 (435)
T 4e54_B          176 NTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKEL------WNL---  246 (435)
T ss_dssp             CTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBC------CCS---
T ss_pred             CCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCccee------EEE---
Confidence            44 454455 5667788874443322222111 11234555667777555 44 67888888765321      000   


Q ss_pred             CCCCCCCCeeEEEEEEcCC--eEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCe
Q 006913          122 SGKGGTGAIAGIAVSTSSS--SVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGS  198 (626)
Q Consensus       122 ~~~~~~~~~I~s~~~d~dG--~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~  198 (626)
                        ..... .|..+....++  .+..++.++-|..+|.. ++..-..       ....  .+   ...+ .++...+.+..
T Consensus       247 --~~h~~-~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~-------~~~~--~h---~~~v-~~~~~spdg~~  310 (435)
T 4e54_B          247 --RMHKK-KVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASF-------LYSL--PH---RHPV-NAACFSPDGAR  310 (435)
T ss_dssp             --BCCSS-CEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCC-------SBCC--BC---SSCE-EECCBCTTSSE
T ss_pred             --ecccc-eEEeeeecCCCceEEEEecCcceeeEEecccccccceE-------EEee--ec---cccc-cceeECCCCCe
Confidence              11112 34444333333  34456666667777753 3211000       0000  00   0111 22233332456


Q ss_pred             EEEEcCCCeEEEEeCCCCeEEEEEcCC--C-CC--cceeeeeecCC-eEEEEE-----------cCCCEEEEEECCCCcE
Q 006913          199 IYISNTQGELYSLSAHSPYFNWIQDLS--S-FD--KAFTLTPGNNG-YLYVTI-----------PVRALVLALDTSSGNI  261 (626)
Q Consensus       199 LwIGT~~GgL~~ld~~tg~~~w~~~~~--s-~~--~v~sI~~D~dG-~LwVGT-----------~~gG~l~alD~~tG~~  261 (626)
                      |..|+.++.|..+|..++.........  . ..  .........++ .+.++.           ..+..+..+|..+|..
T Consensus       311 l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~  390 (435)
T 4e54_B          311 LLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM  390 (435)
T ss_dssp             EEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCE
T ss_pred             eEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcE
Confidence            777778888999998877654332110  0 00  01111111122 222221           1223566778888887


Q ss_pred             EEEEecCCCCCceeeE-EEeeCCeEEEEEcCCeEEEEcCC
Q 006913          262 LWHKSVGPLGSAEYAP-VVDSNGWISVGSLDGLLYSFSPS  300 (626)
Q Consensus       262 ~w~~~~~~l~~~~ssp-vvD~dG~IWVGT~~gGLy~~d~~  300 (626)
                      +.....+. ...+.++ ...++|.+.++..++.|..++..
T Consensus       391 ~~~l~~~~-~~~v~s~~~fspdg~~lasg~d~~i~iW~~~  429 (435)
T 4e54_B          391 MCQLYDPE-SSGISSLNEFNPMGDTLASAMGYHILIWSQQ  429 (435)
T ss_dssp             EEEECCSS-CCCCCCEEEECTTSSCEEEECSSEEEECCCC
T ss_pred             EEEEeCCC-CCcEEEEEEECCCCCEEEEEcCCcEEEEECC
Confidence            65542221 1122233 35667877777667788877753

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.59  E-value=0.098  Score=51.64  Aligned_cols=105  Identities=12%  Similarity=0.189  Sum_probs=63.9

Q ss_pred             eeEEeeCCEEEEEeCCcEEEEcC-C-CCEEEEE---eCCC-CCCcccCeEEecCCeEEEEECCeEEEEECCCCcccccee
Q 006913           41 KPLIGEDGKIYACSEKTLFAFES-N-GTIAWSL---DLDF-TCNIGTAPVHGGTGEVYIVAENRVLKVDLLKIGTSESAT  114 (626)
Q Consensus        41 spvid~dG~IwIgSdggL~a~d~-~-G~~~W~~---~~~~-~~~i~~sp~iD~dG~IwVgT~ggL~~id~~~~~~~~~~~  114 (626)
                      ..+++.+|.||+..++.||.+++ + +...|.-   .++. ......+++.|.+|.||+++++.|+++++-+..-    .
T Consensus        45 ~laf~P~G~LYaV~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav~dG~iyr~~pP~~~~----~  120 (236)
T 1tl2_A           45 FLFLSPGGELYGVLNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAVSKDKLYKASPPQSDT----D  120 (236)
T ss_dssp             EEEECTTSCEEEEETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEEETTEEEEESCCCSTT----C
T ss_pred             eEEECCCccEEEEeCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEeCCCEEEEeCCCcCCC----C
Confidence            56666789999888788999987 4 2233311   1111 0112356788999999999999999998733110    1


Q ss_pred             EEEe-----cCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEe
Q 006913          115 QVFY-----GTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFM  155 (626)
Q Consensus       115 ~~~~-----~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d  155 (626)
                      .|..     +...|     ..+..+..+.+|.||..+ ++-++.-.
T Consensus       121 ~Wl~~a~~vg~~gw-----~~~~~lff~p~G~Lyav~-dg~lyr~~  160 (236)
T 1tl2_A          121 NWIARATEVGSGGW-----SGFKFLFFHPNGYLYAVH-GQQFYKAL  160 (236)
T ss_dssp             CHHHHSEEEECSSG-----GGEEEEEECTTSCEEEEE-TTEEEEEC
T ss_pred             ceeccccEeccCCC-----CceEEEEECCCceEEEEe-CCcEEecC
Confidence            2211     11111     234556678888888887 65565543

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=94.55  E-value=3.7  Score=39.92  Aligned_cols=197  Identities=12%  Similarity=-0.022  Sum_probs=98.2

Q ss_pred             ccCeEEecCCeEEE-EE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEc---CCeEEEEEcCCeEEEE
Q 006913           80 GTAPVHGGTGEVYI-VA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTS---SSSVYINVKGRALFAF  154 (626)
Q Consensus        80 ~~sp~iD~dG~IwV-gT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~---dG~LwIgT~~gGL~a~  154 (626)
                      +.++....+|.+.+ ++ ++.|..++..++..... ....+.     .... .|..+....   +..|..++.++-|..+
T Consensus        14 v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~-----~~~~-~v~~~~~~~~~d~~~l~s~~~dg~v~vw   86 (351)
T 3f3f_A           14 VHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWE-LSDSWR-----AHDS-SIVAIDWASPEYGRIIASASYDKTVKLW   86 (351)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEE-EEEEEE-----CCSS-CEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred             eeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcce-ecceec-----cCCC-cEEEEEEcCCCCCCEEEEEcCCCeEEEE
Confidence            34455556666444 44 67788888765321000 011111     1112 333333322   4567777877778888


Q ss_pred             eCC-Cc---------EEEEECCcccccccccccccCCCCCccccceEEEcC--CCeEEEEcCCCeEEEEeCCCCeEEE--
Q 006913          155 MTH-GQ---------LLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQC--EGSIYISNTQGELYSLSAHSPYFNW--  220 (626)
Q Consensus       155 d~~-G~---------~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~--dG~LwIGT~~GgL~~ld~~tg~~~w--  220 (626)
                      |.+ ++         .......            .   ... ..++...+.  +..|..++.++.|..+|.++++...  
T Consensus        87 d~~~~~~~~~~~~~~~~~~~~~------------~---~~~-v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  150 (351)
T 3f3f_A           87 EEDPDQEECSGRRWNKLCTLND------------S---KGS-LYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSW  150 (351)
T ss_dssp             EECTTSCTTSSCSEEEEEEECC------------C---SSC-EEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCC
T ss_pred             ecCCCcccccccCcceeeeecc------------c---CCc-eeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccc
Confidence            864 42         2222100            0   011 133444432  3457778888889999987765321  


Q ss_pred             E-----EcC-----CCCCcceeeeeec----CCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCC---
Q 006913          221 I-----QDL-----SSFDKAFTLTPGN----NGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNG---  283 (626)
Q Consensus       221 ~-----~~~-----~s~~~v~sI~~D~----dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG---  283 (626)
                      .     ...     .....+.++....    ...+.+++. .+.+...+..++..............+.++...+++   
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~  229 (351)
T 3f3f_A          151 TLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSAL-EQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRW  229 (351)
T ss_dssp             EEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEET-TEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCS
T ss_pred             cccccccccccccCCcccceeEEEeccCCCCCcEEEEecC-CCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCc
Confidence            1     000     0112233444333    335666654 455555565666653332222112235556777675   


Q ss_pred             --eEEEEEcCCeEEEEcCC
Q 006913          284 --WISVGSLDGLLYSFSPS  300 (626)
Q Consensus       284 --~IWVGT~~gGLy~~d~~  300 (626)
                        .|..|+.++.|..+|..
T Consensus       230 ~~~l~s~~~dg~i~iwd~~  248 (351)
T 3f3f_A          230 YQLIATGCKDGRIRIFKIT  248 (351)
T ss_dssp             SEEEEEEETTSCEEEEEEE
T ss_pred             ceEEEEEcCCCeEEEEeCC
Confidence              57778888888888853

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=94.49  E-value=4.2  Score=40.23  Aligned_cols=219  Identities=9%  Similarity=-0.038  Sum_probs=112.4

Q ss_pred             eEEeeCCE-EEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEE--ecCCeEEE-EE-CCeEEEEECCCCcccccee
Q 006913           42 PLIGEDGK-IYACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVH--GGTGEVYI-VA-ENRVLKVDLLKIGTSESAT  114 (626)
Q Consensus        42 pvid~dG~-IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~i--D~dG~IwV-gT-~ggL~~id~~~~~~~~~~~  114 (626)
                      .....+|. |..++ ++.+..+|. ++.........   ..+.++..  ..++.+.+ ++ ++.|..+|..++..     
T Consensus        92 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-----  163 (368)
T 3mmy_A           92 VCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHD---APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP-----  163 (368)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS---SCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC-----
T ss_pred             EEECcCCCEEEEEcCCCcEEEEEcCCCCceeecccc---CceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE-----
Confidence            33434554 44455 566888887 55544322221   12334444  56776444 45 78888888776532     


Q ss_pred             EEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEE
Q 006913          115 QVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVID  193 (626)
Q Consensus       115 ~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD  193 (626)
                      ...+..      .... .. .......+++++.++.+..++.. ....+....   .   .    ..  ..........+
T Consensus       164 ~~~~~~------~~~~-~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~---~----~~--~~~~~~~~~~~  223 (368)
T 3mmy_A          164 MMVLQL------PERC-YC-ADVIYPMAVVATAERGLIVYQLENQPSEFRRIE---S---P----LK--HQHRCVAIFKD  223 (368)
T ss_dssp             SEEEEC------SSCE-EE-EEEETTEEEEEEGGGCEEEEECSSSCEEEEECC---C---S----CS--SCEEEEEEEEC
T ss_pred             EEEEec------CCCc-eE-EEecCCeeEEEeCCCcEEEEEeccccchhhhcc---c---c----cc--CCCceEEEccc
Confidence            111111      0111 11 22235578888888889999875 433333200   0   0    00  00000111111


Q ss_pred             cC--CCeEEEEcCCCeEEEEeCCCCeE---EEEEcCCC-----------CCcceeeeeecCC-eEEEEEcCCCEEEEEEC
Q 006913          194 QC--EGSIYISNTQGELYSLSAHSPYF---NWIQDLSS-----------FDKAFTLTPGNNG-YLYVTIPVRALVLALDT  256 (626)
Q Consensus       194 ~~--dG~LwIGT~~GgL~~ld~~tg~~---~w~~~~~s-----------~~~v~sI~~D~dG-~LwVGT~~gG~l~alD~  256 (626)
                      ..  ...+..|+.++.|..++.+....   ........           ...+.++....+| .|..++ .++.+..+|.
T Consensus       224 ~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~-~dg~i~iwd~  302 (368)
T 3mmy_A          224 KQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG-SDGRFSFWDK  302 (368)
T ss_dssp             TTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEE-TTSCEEEEET
T ss_pred             CCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEc-cCCeEEEEEC
Confidence            10  11288888888888888877521   11111000           0135666666677 455555 4578888998


Q ss_pred             CCCcEEEEEecCCCCCceeeEEEeeCCe-EEEEEcC
Q 006913          257 SSGNILWHKSVGPLGSAEYAPVVDSNGW-ISVGSLD  291 (626)
Q Consensus       257 ~tG~~~w~~~~~~l~~~~sspvvD~dG~-IWVGT~~  291 (626)
                      .+++........  ...+..+...++|. |..|+.+
T Consensus       303 ~~~~~~~~~~~~--~~~v~~~~~s~~g~~l~~~s~d  336 (368)
T 3mmy_A          303 DARTKLKTSEQL--DQPISACCFNHNGNIFAYASSY  336 (368)
T ss_dssp             TTTEEEEECCCC--SSCEEEEEECTTSSCEEEEECC
T ss_pred             CCCcEEEEecCC--CCCceEEEECCCCCeEEEEecc
Confidence            888876554322  22355677776765 4555543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=94.27  E-value=0.46  Score=49.45  Aligned_cols=112  Identities=12%  Similarity=0.097  Sum_probs=65.3

Q ss_pred             ceEEEcCCCe-EEEEcCCCeEEEEeCCCCeEE-EEEcCC-----CCCcceeeeeec----CCeEEEEEcC-------CCE
Q 006913          189 VPVIDQCEGS-IYISNTQGELYSLSAHSPYFN-WIQDLS-----SFDKAFTLTPGN----NGYLYVTIPV-------RAL  250 (626)
Q Consensus       189 spviD~~dG~-LwIGT~~GgL~~ld~~tg~~~-w~~~~~-----s~~~v~sI~~D~----dG~LwVGT~~-------gG~  250 (626)
                      .+..++ +|+ |||+...|.|++++.++ ... ......     .......++.+.    ++.||+....       ...
T Consensus        22 ~i~~~p-dG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~   99 (353)
T 2g8s_A           22 ALAFLP-DNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTA   99 (353)
T ss_dssp             EEEECS-TTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEE
T ss_pred             EEEEcC-CCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeE
Confidence            356675 888 99999889999998764 332 111111     111234566664    6899998532       125


Q ss_pred             EEEEECCCC--cEE-EE--E-ecCC---CCCceeeEEEeeCCeEEEEEcC--------------CeEEEEcCCCC
Q 006913          251 VLALDTSSG--NIL-WH--K-SVGP---LGSAEYAPVVDSNGWISVGSLD--------------GLLYSFSPSGV  302 (626)
Q Consensus       251 l~alD~~tG--~~~-w~--~-~~~~---l~~~~sspvvD~dG~IWVGT~~--------------gGLy~~d~~g~  302 (626)
                      +..++...+  ... ..  . ..+.   .......++++++|+||+++.+              +.|++++++|.
T Consensus       100 v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~  174 (353)
T 2g8s_A          100 VGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE  174 (353)
T ss_dssp             EEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred             EEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence            666654322  221 11  1 1110   0112346888999999999743              47899988764

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=94.27  E-value=5.3  Score=40.60  Aligned_cols=186  Identities=9%  Similarity=-0.076  Sum_probs=103.0

Q ss_pred             eEEecCCe-EEEEE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEE--EcC-CeEEEEEcCCeEEEEeCC
Q 006913           83 PVHGGTGE-VYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVS--TSS-SSVYINVKGRALFAFMTH  157 (626)
Q Consensus        83 p~iD~dG~-IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~--d~d-G~LwIgT~~gGL~a~d~~  157 (626)
                      +....++. |..++ ++.|...|..++..     ...+..     ... .+.....  ..+ ..|+.|+.++.+..+|..
T Consensus       160 ~~~~~~~~~l~t~s~D~~v~lwd~~~~~~-----~~~~~~-----h~~-~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~  228 (354)
T 2pbi_B          160 CSFTNSDMQILTASGDGTCALWDVESGQL-----LQSFHG-----HGA-DVLCLDLAPSETGNTFVSGGCDKKAMVWDMR  228 (354)
T ss_dssp             EEECSSSSEEEEEETTSEEEEEETTTCCE-----EEEEEC-----CSS-CEEEEEECCCSSCCEEEEEETTSCEEEEETT
T ss_pred             EEEeCCCCEEEEEeCCCcEEEEeCCCCeE-----EEEEcC-----CCC-CeEEEEEEeCCCCCEEEEEeCCCeEEEEECC
Confidence            33444554 55555 78888889877632     111111     112 2222222  223 467778888889999974


Q ss_pred             -CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCC-CCcceeeee
Q 006913          158 -GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSS-FDKAFTLTP  235 (626)
Q Consensus       158 -G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s-~~~v~sI~~  235 (626)
                       ++....+..            +   ...+ .++...+.+..|..|+.++.|..+|.+++.......... ...+.++..
T Consensus       229 ~~~~~~~~~~------------h---~~~v-~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~  292 (354)
T 2pbi_B          229 SGQCVQAFET------------H---ESDV-NSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDF  292 (354)
T ss_dssp             TCCEEEEECC------------C---SSCE-EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEE
T ss_pred             CCcEEEEecC------------C---CCCe-EEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEE
Confidence             766544310            0   0111 334444324567778888889999998876544332211 123445555


Q ss_pred             ecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCe-EEEEEcCCeEEEE
Q 006913          236 GNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGW-ISVGSLDGLLYSF  297 (626)
Q Consensus       236 D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~-IWVGT~~gGLy~~  297 (626)
                      ..+|.+.+....++.+..+|..++.........  ...+.++...++|. |..|+.++.|..+
T Consensus       293 s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h--~~~v~~l~~spdg~~l~sgs~D~~v~vW  353 (354)
T 2pbi_B          293 SLSGRLLFAGYNDYTINVWDVLKGSRVSILFGH--ENRVSTLRVSPDGTAFCSGSWDHTLRVW  353 (354)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCSEEEEECCC--SSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred             eCCCCEEEEEECCCcEEEEECCCCceEEEEECC--CCcEEEEEECCCCCEEEEEcCCCCEEec
Confidence            667765544435578888898888765443211  12345566666664 5556666666554

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=94.19  E-value=5.2  Score=40.17  Aligned_cols=188  Identities=11%  Similarity=0.002  Sum_probs=101.2

Q ss_pred             EEEEE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC-CcEEEEECCcc
Q 006913           91 VYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH-GQLLWSAGPVL  168 (626)
Q Consensus        91 IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~  168 (626)
                      +..|. ++.|..+|..++...   ..........-.....   .+....|+.+.+-...+.+..++.. ++.+..+.   
T Consensus        51 l~sg~~Dg~v~iwd~~~~~~~---~~~~~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~---  121 (343)
T 3lrv_A           51 CMCRCEDGALHFTQLKDSKTI---TTITTPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIE---  121 (343)
T ss_dssp             EEEEEETTEEEEEEESSSSCE---EEEEEECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEE---
T ss_pred             EEEECCCCcEEEEECCCCcEE---EEEecCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEee---
Confidence            44444 788888888766421   1111111000000011   2333466777766666677777754 55433320   


Q ss_pred             cccccccccccCCCCCccccceEEEc--CCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEc
Q 006913          169 DQLGYRQGCTKTDVDCYFTSVPVIDQ--CEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIP  246 (626)
Q Consensus       169 ~~~~~~~~~~~~l~~~~i~sspviD~--~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~  246 (626)
                        .+      +.   ..+ ..+...+  .+..+..|+.++.|..+|.++++............+.++....+|.+.+...
T Consensus       122 --~~------~~---~~v-~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~  189 (343)
T 3lrv_A          122 --VD------SA---NEI-IYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYS  189 (343)
T ss_dssp             --CC------CS---SCE-EEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEEC
T ss_pred             --cC------CC---CCE-EEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEc
Confidence              00      00   011 1122221  1455666888899999999988775443222222356667777887666433


Q ss_pred             CCCEEEEEECCCCcEE-EEEecCCCCCceeeEEEeeCCeEEEEEcCCeEEEEcCC
Q 006913          247 VRALVLALDTSSGNIL-WHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPS  300 (626)
Q Consensus       247 ~gG~l~alD~~tG~~~-w~~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~  300 (626)
                      .++.+..+|..+++.. ....... ...+.++...++|...+.+.++.|..+|..
T Consensus       190 ~dg~i~iwd~~~~~~~~~~~~~~h-~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~  243 (343)
T 3lrv_A          190 PDGILDVYNLSSPDQASSRFPVDE-EAKIKEVKFADNGYWMVVECDQTVVCFDLR  243 (343)
T ss_dssp             TTSCEEEEESSCTTSCCEECCCCT-TSCEEEEEECTTSSEEEEEESSBEEEEETT
T ss_pred             CCCEEEEEECCCCCCCccEEeccC-CCCEEEEEEeCCCCEEEEEeCCeEEEEEcC
Confidence            5678888998888755 3333211 123556777777764444336689999864

>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}

Probab=94.17  E-value=1.1  Score=49.87  Aligned_cols=161  Identities=20%  Similarity=0.340  Sum_probs=89.7

Q ss_pred             cCCeEEEEEcCCeEEEEeCCCcEEEEECCc--ccccccccccccCCC----CCccccceEE-EcC-CC---eEEEEc-C-
Q 006913          138 SSSSVYINVKGRALFAFMTHGQLLWSAGPV--LDQLGYRQGCTKTDV----DCYFTSVPVI-DQC-EG---SIYISN-T-  204 (626)
Q Consensus       138 ~dG~LwIgT~~gGL~a~d~~G~~~w~~~~~--~~~~~~~~~~~~~l~----~~~i~sspvi-D~~-dG---~LwIGT-~-  204 (626)
                      +...||+|+.++-|.+|+..|+.+|.+-|.  +..+. ... ..+..    ...+..+|.+ |-. ++   .+.+|+ . 
T Consensus        84 R~~~VyvGaNDGmLHaF~a~G~E~wAfiP~~~l~~L~-~l~-~~~y~~~~h~Y~VDG~p~~~Dv~~~g~wrtvLvggmg~  161 (570)
T 3hx6_A           84 RAPRVYVGANDGMLHGFDTDGNETFAFIPSAVFEKMH-KLT-ARGYQGGAHQFYVDGSPVVADAFFGGAWHTVLIGSLRA  161 (570)
T ss_dssp             CCCEEEEECSSSCEEECCSSCCCCEEECCHHHHHHCC---------CCHHHHHHHHCCCEEEEEEETTEEEEEEEEECTT
T ss_pred             CccEEEEECCCceEEEECCCCcEEEEECCHHHHHHHH-HHh-ccCccccCcceecCCCCEEEEEEeCCcceEEEEEecCC
Confidence            457899999888899999889999986331  11110 000 00000    0011122332 100 11   233443 2 


Q ss_pred             -CCeEEEEeCCC---CeEEEEEcCC---CCC---cceeeeeecCCe--EEEEEc-----CCCEEEEEECCCCcEEEEEec
Q 006913          205 -QGELYSLSAHS---PYFNWIQDLS---SFD---KAFTLTPGNNGY--LYVTIP-----VRALVLALDTSSGNILWHKSV  267 (626)
Q Consensus       205 -~GgL~~ld~~t---g~~~w~~~~~---s~~---~v~sI~~D~dG~--LwVGT~-----~gG~l~alD~~tG~~~w~~~~  267 (626)
                       ..++|+||..+   .++.|.....   ...   .-+.|..-.+|+  +.+|.-     ++..||.+|..+|..+|....
T Consensus       162 GG~~~yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~P~I~~~~~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~li~~i~~  241 (570)
T 3hx6_A          162 GGKGLFALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVARLHNGKWAVVTGNGYSSMNDKAALLIIDMETGAITRKLEV  241 (570)
T ss_dssp             SCSEEEEEECSSGGGCEEEEEEETTTCTTCCBCCSCCEEEECTTSSEEEEEECCBSCTTCCEEEEEEETTTCCEEEEEEE
T ss_pred             CCcEEEEEECCCCCCCceeEEECCCCccccCccccCCEEEEecCCCEEEEEccccCCCCCccEEEEEECCCCceEEEEec
Confidence             34799999765   6799986522   111   123344434554  333321     134799999999999998654


Q ss_pred             CCC---CCceeeE-EEeeC-----CeEEEEEcCCeEEEEcCC
Q 006913          268 GPL---GSAEYAP-VVDSN-----GWISVGSLDGLLYSFSPS  300 (626)
Q Consensus       268 ~~l---~~~~ssp-vvD~d-----G~IWVGT~~gGLy~~d~~  300 (626)
                      ...   ....+.+ ++|.+     +.+|+|...|.||+||..
T Consensus       242 ~~~~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~GnlWRfDl~  283 (570)
T 3hx6_A          242 TGRTGVPNGLSSPRLADNNSDGVADYAYAGDLQGNLWRFDLI  283 (570)
T ss_dssp             CCSTTSCCCEEEEEEECTTSSSBCCEEEEEETTSEEEEEECS
T ss_pred             CCCCccCCccccceEEecCCCCceeEEEEEeCCCcEEEEEcC
Confidence            321   1123444 35544     369999999999999964

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=94.16  E-value=5.8  Score=40.63  Aligned_cols=190  Identities=9%  Similarity=0.020  Sum_probs=103.6

Q ss_pred             eEEEEE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCC-eEEEEEcCCeEEEEeCC--CcEEEEEC
Q 006913           90 EVYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSS-SVYINVKGRALFAFMTH--GQLLWSAG  165 (626)
Q Consensus        90 ~IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG-~LwIgT~~gGL~a~d~~--G~~~w~~~  165 (626)
                      .+..++ ++.|...|..++..     ...+...........+........++ .+..|+.++-+..+|..  ++....+.
T Consensus       172 ~l~s~s~D~~i~~wd~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~  246 (380)
T 3iz6_a          172 RLITGSGDQTCVLWDVTTGQR-----ISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYH  246 (380)
T ss_dssp             CEEEECTTSCEEEECTTTCCE-----EEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEEC
T ss_pred             EEEEECCCCcEEEEEcCCCcE-----EEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEEC
Confidence            466565 78888889877631     11222111111222233322223244 45566777888888863  33322220


Q ss_pred             CcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCC------CCcceeeeeecCC
Q 006913          166 PVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSS------FDKAFTLTPGNNG  239 (626)
Q Consensus       166 ~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s------~~~v~sI~~D~dG  239 (626)
                            +      +.   .. ..++...+.+..|..|+.++.|..+|.++++.........      ...+.+++...+|
T Consensus       247 ------~------h~---~~-v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  310 (380)
T 3iz6_a          247 ------G------HE---GD-INSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISG  310 (380)
T ss_dssp             ------C------CS---SC-CCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSS
T ss_pred             ------C------cC---CC-eEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCC
Confidence                  0      00   11 1334454424456777788999999999987654432211      1124566666677


Q ss_pred             eEEEEEcCCCEEEEEECCCCcEEEEEec--CCCCCceeeEEEeeCCe-EEEEEcCCeEEEEcCC
Q 006913          240 YLYVTIPVRALVLALDTSSGNILWHKSV--GPLGSAEYAPVVDSNGW-ISVGSLDGLLYSFSPS  300 (626)
Q Consensus       240 ~LwVGT~~gG~l~alD~~tG~~~w~~~~--~~l~~~~sspvvD~dG~-IWVGT~~gGLy~~d~~  300 (626)
                      .+.+....++.+...|..+++.......  ..-...+.++...++|. |..|+.++.|..++..
T Consensus       311 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~  374 (380)
T 3iz6_a          311 RLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS  374 (380)
T ss_dssp             SEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred             CEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence            6555544567888899888877654321  11112345566766765 5556677777777643

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=94.14  E-value=6.2  Score=40.90  Aligned_cols=260  Identities=8%  Similarity=-0.040  Sum_probs=137.3

Q ss_pred             CCEEEEEeCCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEE-EE-CCeEEEEECCCCccccceeEEEecCCCC
Q 006913           47 DGKIYACSEKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYI-VA-ENRVLKVDLLKIGTSESATQVFYGTGSG  123 (626)
Q Consensus        47 dG~IwIgSdggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwV-gT-~ggL~~id~~~~~~~~~~~~~~~~~~~~  123 (626)
                      ++.|-+|.++.++.+|. +|+....+........+.++....+|++.+ |+ ++.|...|..++..     ...+.    
T Consensus       116 ~n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~-----~~~~~----  186 (420)
T 4gga_A          116 GNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR-----LRNMT----  186 (420)
T ss_dssp             TSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----EEEEC----
T ss_pred             CCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE-----EEEEe----
Confidence            44455566888999998 888765444432223455666677777544 55 78888899887631     12221    


Q ss_pred             CCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC--CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEE
Q 006913          124 KGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH--GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYI  201 (626)
Q Consensus       124 ~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~--G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwI  201 (626)
                       .... .+... ......|..|+.++.+..++..  ........      +      +.   .. .........+..+..
T Consensus       187 -~h~~-~v~~~-s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~------~------h~---~~-~~~~~~~~~g~~l~s  247 (420)
T 4gga_A          187 -SHSA-RVGSL-SWNSYILSSGSRSGHIHHHDVRVAEHHVATLS------G------HS---QE-VCGLRWAPDGRHLAS  247 (420)
T ss_dssp             -CCSS-CEEEE-EEETTEEEEEETTSEEEEEETTSSSCEEEEEE------C------CS---SC-EEEEEECTTSSEEEE
T ss_pred             -CCCC-ceEEE-eeCCCEEEEEeCCCceeEeeecccceeeEEec------c------cc---cc-eeeeeecCCCCeeee
Confidence             1112 22222 2234556667777777777753  22222210      0      00   00 112233322445666


Q ss_pred             EcCCCeEEEEeCCCCeEEEE---EcCCCCCcceeeeee--cCCeEEEEEc-CCCEEEEEECCCCcEEEEEecCCCCCcee
Q 006913          202 SNTQGELYSLSAHSPYFNWI---QDLSSFDKAFTLTPG--NNGYLYVTIP-VRALVLALDTSSGNILWHKSVGPLGSAEY  275 (626)
Q Consensus       202 GT~~GgL~~ld~~tg~~~w~---~~~~s~~~v~sI~~D--~dG~LwVGT~-~gG~l~alD~~tG~~~w~~~~~~l~~~~s  275 (626)
                      +..++.+..++..+++..+.   ........+.++...  ....+.+++. .++.+...|..+|..........   ...
T Consensus       248 ~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~---~v~  324 (420)
T 4gga_A          248 GGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS---QVC  324 (420)
T ss_dssp             EETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS---CEE
T ss_pred             eeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc---cee
Confidence            77788888888776543211   000111233343332  2334444431 34678888998998776654432   234


Q ss_pred             eEEEeeC-CeEEEEE--cCCeEEEEcCC-CCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEEeeecCeeEE
Q 006913          276 APVVDSN-GWISVGS--LDGLLYSFSPS-GVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLMVVGQFSS  346 (626)
Q Consensus       276 spvvD~d-G~IWVGT--~~gGLy~~d~~-g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~t~~Ggl~~  346 (626)
                      +.+...+ +.+.+++  .++.|+.+|.. ++......   .     ....|.++....+|... .++...|-+..
T Consensus       325 ~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~---g-----H~~~V~~l~~spdg~~l-~S~s~D~tvri  390 (420)
T 4gga_A          325 SILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK---G-----HTSRVLSLTMSPDGATV-ASAAADETLRL  390 (420)
T ss_dssp             EEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC---C-----CSSCEEEEEECTTSSCE-EEEETTTEEEE
T ss_pred             eeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEc---C-----CCCCEEEEEEcCCCCEE-EEEecCCeEEE
Confidence            4555444 4555555  56789999864 65544332   1     12345666666677653 45554454443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=94.01  E-value=4.3  Score=38.54  Aligned_cols=209  Identities=11%  Similarity=0.058  Sum_probs=102.1

Q ss_pred             CcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEE-ECCeEEEEECCC-CccccceeEEEecCCCCCCCCCCeeE
Q 006913           56 KTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIV-AENRVLKVDLLK-IGTSESATQVFYGTGSGKGGTGAIAG  132 (626)
Q Consensus        56 ggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVg-T~ggL~~id~~~-~~~~~~~~~~~~~~~~~~~~~~~~I~  132 (626)
                      +.|+.+|. +++........   ..+.++....+|+.++. .++.|+.+|..+ +..     .... ..    .....+.
T Consensus        22 ~~i~~~d~~~~~~~~~~~~~---~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~-----~~~~-~~----~~~~~~~   88 (297)
T 2ojh_A           22 SSIEIFNIRTRKMRVVWQTP---ELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSP-----EKVD-TG----FATICNN   88 (297)
T ss_dssp             EEEEEEETTTTEEEEEEEES---SCCEEEEECTTSSEEEEEETTEEEEEESSSCCSC-----EECC-CT----TCCCBCS
T ss_pred             eeEEEEeCCCCceeeeccCC---cceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCc-----eEec-cc----ccccccc
Confidence            46888887 66554322221   23446667778885554 488999999877 531     1111 10    1111222


Q ss_pred             EEEEEcCCe-EEEEEc----CCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEE-EEcCC
Q 006913          133 IAVSTSSSS-VYINVK----GRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIY-ISNTQ  205 (626)
Q Consensus       133 s~~~d~dG~-LwIgT~----~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~Lw-IGT~~  205 (626)
                      .+....+|. |+++..    ...|+.++.. ++. .....            .    .. ...+...+.+..|+ .+..+
T Consensus        89 ~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~------------~----~~-~~~~~~spdg~~l~~~~~~~  150 (297)
T 2ojh_A           89 DHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTK------------N----LP-SYWHGWSPDGKSFTYCGIRD  150 (297)
T ss_dssp             CCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECCS------------S----SS-EEEEEECTTSSEEEEEEEET
T ss_pred             ceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEeec------------C----CC-ccceEECCCCCEEEEEECCC
Confidence            233334554 444441    3567777764 332 11100            0    00 12234443133354 34444


Q ss_pred             C--eEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCe-EEEEEc--CCCEEEEEECCCCcEEEEEecCCCCCceeeEEEe
Q 006913          206 G--ELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGY-LYVTIP--VRALVLALDTSSGNILWHKSVGPLGSAEYAPVVD  280 (626)
Q Consensus       206 G--gL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~-LwVGT~--~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD  280 (626)
                      +  .|+.++..++.......  ....+..+....+|. |+++..  ....++.++..++.... ....  ......+...
T Consensus       151 ~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~-~~~~--~~~~~~~~~s  225 (297)
T 2ojh_A          151 QVFDIYSMDIDSGVETRLTH--GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVER-ITDS--AYGDWFPHPS  225 (297)
T ss_dssp             TEEEEEEEETTTCCEEECCC--SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEE-CCCC--SEEEEEEEEC
T ss_pred             CceEEEEEECCCCcceEccc--CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEE-EecC--CcccCCeEEC
Confidence            4  46677777765533211  112344555666775 555542  23467777755554432 1111  1123446666


Q ss_pred             eCCe-EEEEEcC-----------CeEEEEcCC
Q 006913          281 SNGW-ISVGSLD-----------GLLYSFSPS  300 (626)
Q Consensus       281 ~dG~-IWVGT~~-----------gGLy~~d~~  300 (626)
                      ++|. |++++.+           ..|+.+|..
T Consensus       226 ~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~  257 (297)
T 2ojh_A          226 PSGDKVVFVSYDADVFDHPRDLDVRVQLMDMD  257 (297)
T ss_dssp             TTSSEEEEEEEETTCCSCCSSEEEEEEEEETT
T ss_pred             CCCCEEEEEEcCCCCCcccccCceEEEEEecC
Confidence            6765 5555543           348888865

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=94.00  E-value=1.3  Score=44.92  Aligned_cols=192  Identities=9%  Similarity=-0.059  Sum_probs=92.0

Q ss_pred             ccCeEEecCCeEEEEE--CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCC-eEEEEEcCCeEEEEeC
Q 006913           80 GTAPVHGGTGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSS-SVYINVKGRALFAFMT  156 (626)
Q Consensus        80 ~~sp~iD~dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG-~LwIgT~~gGL~a~d~  156 (626)
                      +.++....+|++.+..  ++.|..++..++.       +.... ...... ..+..+....++ .|..++.++.|..+|.
T Consensus        14 v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~-------~~~~~-~~~~h~-~~v~~~~~s~~~~~l~s~s~d~~v~vwd~   84 (377)
T 3dwl_C           14 SYEHAFNSQRTEFVTTTATNQVELYEQDGNG-------WKHAR-TFSDHD-KIVTCVDWAPKSNRIVTCSQDRNAYVYEK   84 (377)
T ss_dssp             CSCCEECSSSSEEECCCSSSCBCEEEEETTE-------EEECC-CBCCCS-SCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred             EEEEEECCCCCEEEEecCCCEEEEEEccCCc-------eEEEE-EEecCC-ceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence            4455666677755433  5667777766541       10000 001112 234444444444 5667777788888886


Q ss_pred             C-Cc---EEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeE---EEEEcCCCCCc
Q 006913          157 H-GQ---LLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYF---NWIQDLSSFDK  229 (626)
Q Consensus       157 ~-G~---~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~---~w~~~~~s~~~  229 (626)
                      . ++   ......      +      +   ...+ ..+...+.+..|..|+.++.|..+|.++++.   ...........
T Consensus        85 ~~~~~~~~~~~~~------~------~---~~~v-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~  148 (377)
T 3dwl_C           85 RPDGTWKQTLVLL------R------L---NRAA-TFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRST  148 (377)
T ss_dssp             ----CCCCEEECC------C------C---SSCE-EEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSC
T ss_pred             CCCCceeeeeEec------c------c---CCce-EEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCC
Confidence            4 43   111110      0      0   0111 2233333245677888888898888887652   11111101234


Q ss_pred             ceeeeeecCCe-EEEEEcCCCEEEEEECCC------------------CcEEEEEecCCCCCceeeEEEeeCCe-EEEEE
Q 006913          230 AFTLTPGNNGY-LYVTIPVRALVLALDTSS------------------GNILWHKSVGPLGSAEYAPVVDSNGW-ISVGS  289 (626)
Q Consensus       230 v~sI~~D~dG~-LwVGT~~gG~l~alD~~t------------------G~~~w~~~~~~l~~~~sspvvD~dG~-IWVGT  289 (626)
                      +.++....+|. |..++ .++.+..+|..+                  +......  . ....+.++...++|. |..|+
T Consensus       149 v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~v~~~~~sp~~~~l~~~~  224 (377)
T 3dwl_C          149 ILSLDWHPNNVLLAAGC-ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--P-SGGWVHAVGFSPSGNALAYAG  224 (377)
T ss_dssp             EEEEEECTTSSEEEEEE-SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--C-CSSSEEEEEECTTSSCEEEEE
T ss_pred             eEEEEEcCCCCEEEEEe-CCCEEEEEEEEecccCCCccccccccccchhhhhhcc--c-CCceEEEEEECCCCCEEEEEe
Confidence            56666666774 55555 345666666532                  2222111  1 112345566766665 77788


Q ss_pred             cCCeEEEEcCC
Q 006913          290 LDGLLYSFSPS  300 (626)
Q Consensus       290 ~~gGLy~~d~~  300 (626)
                      .++.|..+|..
T Consensus       225 ~d~~i~iwd~~  235 (377)
T 3dwl_C          225 HDSSVTIAYPS  235 (377)
T ss_dssp             TTTEEC-CEEC
T ss_pred             CCCcEEEEECC
Confidence            88888888854

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=93.96  E-value=6  Score=40.04  Aligned_cols=152  Identities=9%  Similarity=0.033  Sum_probs=88.6

Q ss_pred             eEEEEEEcCC--eEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEc-CCCeEEEEcCCC
Q 006913          131 AGIAVSTSSS--SVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQ-CEGSIYISNTQG  206 (626)
Q Consensus       131 I~s~~~d~dG--~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~-~dG~LwIGT~~G  206 (626)
                      |..+....++  .|..|+.++.|..+|.. ++.......    .+      +   ...+ .++...+ .+..|..++.++
T Consensus        76 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~------h---~~~v-~~~~~~~~~~~~l~s~~~d~  141 (383)
T 3ei3_B           76 VTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQG----MG------P---GDAI-TGMKFNQFNTNQLFVSSIRG  141 (383)
T ss_dssp             EEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECC----CS------T---TCBE-EEEEEETTEEEEEEEEETTT
T ss_pred             EEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeec----CC------c---CCce-eEEEeCCCCCCEEEEEeCCC
Confidence            3333333443  67777778888889975 554433200    00      0   0112 3344432 135577788889


Q ss_pred             eEEEEeCCCCeEEEEEcCCC-CCcceeeeeecCCe-EEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCC-
Q 006913          207 ELYSLSAHSPYFNWIQDLSS-FDKAFTLTPGNNGY-LYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNG-  283 (626)
Q Consensus       207 gL~~ld~~tg~~~w~~~~~s-~~~v~sI~~D~dG~-LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG-  283 (626)
                      .|..+|.++....-...... ...+.++....++. |..|+ .++.+..+|. +++........  ...+.++...+++ 
T Consensus       142 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~-~~~~~~~~~~h--~~~v~~~~~~~~~~  217 (383)
T 3ei3_B          142 ATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGD-STGRLLLLGL-DGHEIFKEKLH--KAKVTHAEFNPRCD  217 (383)
T ss_dssp             EEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEE-TTSEEEEEET-TSCEEEEEECS--SSCEEEEEECSSCT
T ss_pred             EEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEEC-CCCCEEEEEC-CCCEEEEeccC--CCcEEEEEECCCCC
Confidence            99999998755443332221 23456666666664 55555 5678888996 56665554322  1235556676666 


Q ss_pred             -eEEEEEcCCeEEEEcCC
Q 006913          284 -WISVGSLDGLLYSFSPS  300 (626)
Q Consensus       284 -~IWVGT~~gGLy~~d~~  300 (626)
                       .+..|+.++.|..+|..
T Consensus       218 ~~l~s~~~d~~i~iwd~~  235 (383)
T 3ei3_B          218 WLMATSSVDATVKLWDLR  235 (383)
T ss_dssp             TEEEEEETTSEEEEEEGG
T ss_pred             CEEEEEeCCCEEEEEeCC
Confidence             47778888899999853

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=93.75  E-value=5.5  Score=45.44  Aligned_cols=232  Identities=9%  Similarity=0.005  Sum_probs=113.0

Q ss_pred             EeeCCE-EEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecC--CeEE-EEE-CCeEEEEECCCCccccceeEE
Q 006913           44 IGEDGK-IYACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGT--GEVY-IVA-ENRVLKVDLLKIGTSESATQV  116 (626)
Q Consensus        44 id~dG~-IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~d--G~Iw-VgT-~ggL~~id~~~~~~~~~~~~~  116 (626)
                      ...+|. |..|+ ++.+..+|. ++..............+.++....+  +++. .++ ++.|..+|..++..  . ...
T Consensus        17 ~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~--~-~~~   93 (753)
T 3jro_A           17 LDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW--S-QIA   93 (753)
T ss_dssp             CCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEE--E-EEE
T ss_pred             ECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcc--c-ccc
Confidence            334554 44455 556777775 3322211111111122334444443  5544 455 67788888776521  0 011


Q ss_pred             EecCCCCCCCCCCeeEEEEEE-c--CCeEEEEEcCCeEEEEeCC-CcE--EEEECCcccccccccccccCCCCCccccce
Q 006913          117 FYGTGSGKGGTGAIAGIAVST-S--SSSVYINVKGRALFAFMTH-GQL--LWSAGPVLDQLGYRQGCTKTDVDCYFTSVP  190 (626)
Q Consensus       117 ~~~~~~~~~~~~~~I~s~~~d-~--dG~LwIgT~~gGL~a~d~~-G~~--~w~~~~~~~~~~~~~~~~~~l~~~~i~ssp  190 (626)
                      .+.     .... .+..+... .  +..+..|+.++.+..+|.. +..  ......            +.   ..+ .++
T Consensus        94 ~~~-----~h~~-~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~------------~~---~~v-~~l  151 (753)
T 3jro_A           94 VHA-----VHSA-SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA------------HA---IGV-NSA  151 (753)
T ss_dssp             EEC-----CCSS-CEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEEC------------CS---SCE-EEE
T ss_pred             ccc-----CCCC-CeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeec------------CC---Cce-EEE
Confidence            111     1112 33433333 3  4567778888888888864 311  111100            00   001 112


Q ss_pred             EEEc-------------CCCeEEEEcCCCeEEEEeCCCCeEEEE--EcCC-CCCcceeeeeecC---CeEEEEEcCCCEE
Q 006913          191 VIDQ-------------CEGSIYISNTQGELYSLSAHSPYFNWI--QDLS-SFDKAFTLTPGNN---GYLYVTIPVRALV  251 (626)
Q Consensus       191 viD~-------------~dG~LwIGT~~GgL~~ld~~tg~~~w~--~~~~-s~~~v~sI~~D~d---G~LwVGT~~gG~l  251 (626)
                      ...+             .+..|..|+.+|.|..+|.+++...+.  .... ....+.++....+   |.+.+....++.+
T Consensus       152 ~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I  231 (753)
T 3jro_A          152 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC  231 (753)
T ss_dssp             EECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCE
T ss_pred             EecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEE
Confidence            2211             145678888888899998877643222  1111 1234566666666   6544444345677


Q ss_pred             EEEECCCCcEEEEEec---CCCCCceeeEEEeeCC-eEEEEEcCCeEEEEcCC
Q 006913          252 LALDTSSGNILWHKSV---GPLGSAEYAPVVDSNG-WISVGSLDGLLYSFSPS  300 (626)
Q Consensus       252 ~alD~~tG~~~w~~~~---~~l~~~~sspvvD~dG-~IWVGT~~gGLy~~d~~  300 (626)
                      ..+|..++...+....   ......+.++...++| .+..|+.+|.|+.++..
T Consensus       232 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~  284 (753)
T 3jro_A          232 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (753)
T ss_dssp             EEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred             EEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence            7777666532211111   0011224456666666 46677788888888864

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=93.48  E-value=8  Score=39.91  Aligned_cols=108  Identities=12%  Similarity=0.037  Sum_probs=68.1

Q ss_pred             CCeEEEEcCCCeEEEEeCCCCeEEEEEcCC-CCCcceeeeeecCCe-EEEEEcCCCEEEEEECCCCcEEEEEecCCCCCc
Q 006913          196 EGSIYISNTQGELYSLSAHSPYFNWIQDLS-SFDKAFTLTPGNNGY-LYVTIPVRALVLALDTSSGNILWHKSVGPLGSA  273 (626)
Q Consensus       196 dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~-s~~~v~sI~~D~dG~-LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~  273 (626)
                      +..|..|+.++.|..+|.++++........ ....+.++....++. |..|+ .++.+..+|..++.......... ...
T Consensus       182 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~-~~~  259 (437)
T 3gre_A          182 KSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGT-TRGIIDIWDIRFNVLIRSWSFGD-HAP  259 (437)
T ss_dssp             CEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEE-TTSCEEEEETTTTEEEEEEBCTT-CEE
T ss_pred             CCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEc-CCCeEEEEEcCCccEEEEEecCC-CCc
Confidence            445777888899999999998876654421 123466677776775 55555 45788889988887765543321 112


Q ss_pred             eeeEEE----eeCC-eEEEEEcCCeEEEEcCC-CCEEE
Q 006913          274 EYAPVV----DSNG-WISVGSLDGLLYSFSPS-GVLNK  305 (626)
Q Consensus       274 ~sspvv----D~dG-~IWVGT~~gGLy~~d~~-g~~~~  305 (626)
                      +.++..    .+++ .|..|+.++.|..+|.. ++...
T Consensus       260 v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~  297 (437)
T 3gre_A          260 ITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQY  297 (437)
T ss_dssp             EEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEE
T ss_pred             eEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEE
Confidence            333322    2345 45666677779999975 55443

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=93.44  E-value=8.7  Score=40.21  Aligned_cols=226  Identities=8%  Similarity=-0.036  Sum_probs=113.7

Q ss_pred             eeeeEEeeCCEEE-E-Ee-CCcEEEEcC---CCCEEEEEeCCCCCCcccCeEEecCCe-EEEEE-CCeEEEEECCCCccc
Q 006913           39 LSKPLIGEDGKIY-A-CS-EKTLFAFES---NGTIAWSLDLDFTCNIGTAPVHGGTGE-VYIVA-ENRVLKVDLLKIGTS  110 (626)
Q Consensus        39 ~Sspvid~dG~Iw-I-gS-dggL~a~d~---~G~~~W~~~~~~~~~i~~sp~iD~dG~-IwVgT-~ggL~~id~~~~~~~  110 (626)
                      ...+....+|... + |+ ++.+..++.   ++.....+........+.++....+|. |+++. ++.++.++..+....
T Consensus       105 v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~  184 (450)
T 2vdu_B          105 IRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEE  184 (450)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCS
T ss_pred             eEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccc
Confidence            4555565677653 3 43 566666664   344332221100011234555666766 44555 678988887664311


Q ss_pred             cceeEEEecCCCCCCCCCCeeEEEEEEcC---C-eEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCc
Q 006913          111 ESATQVFYGTGSGKGGTGAIAGIAVSTSS---S-SVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCY  185 (626)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~I~s~~~d~d---G-~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~  185 (626)
                      ....      ...... ...+..+....+   + .|..++.++.|..+|.. ++.+..+..     +      +   ...
T Consensus       185 ~~~~------~~~~~h-~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-----~------h---~~~  243 (450)
T 2vdu_B          185 KFTQ------EPILGH-VSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLF-----G------H---KHF  243 (450)
T ss_dssp             SCCC------CCSEEC-SSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECC-----C------C---SSC
T ss_pred             cccc------eeeecc-cCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeec-----C------C---CCc
Confidence            0000      000011 123444444444   5 46667777788888864 665443200     0      0   011


Q ss_pred             cccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCC-----------------------C-CCcceeeeeecCC-e
Q 006913          186 FTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLS-----------------------S-FDKAFTLTPGNNG-Y  240 (626)
Q Consensus       186 i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~-----------------------s-~~~v~sI~~D~dG-~  240 (626)
                      + .++... .+..|+.|+.++.|..+|.++++........                       . ...+..+....+| .
T Consensus       244 v-~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~  321 (450)
T 2vdu_B          244 V-SSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPF  321 (450)
T ss_dssp             E-EEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSE
T ss_pred             e-EEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCE
Confidence            1 233333 2677888888999999999998765443211                       0 0123445555556 4


Q ss_pred             EEEEEcCCCEEEEEEC--CCC---cEEEEEecCCCCCceeeEEEeeCCeEEEEEcC
Q 006913          241 LYVTIPVRALVLALDT--SSG---NILWHKSVGPLGSAEYAPVVDSNGWISVGSLD  291 (626)
Q Consensus       241 LwVGT~~gG~l~alD~--~tG---~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~~  291 (626)
                      |+++....+.+..++.  .++   .........   ..+.++...+ +.+++...+
T Consensus       322 l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~-~~~~v~~~~  373 (450)
T 2vdu_B          322 VAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHN-DEFQVTLDN  373 (450)
T ss_dssp             EEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEET-TEEEEEECC
T ss_pred             EEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecC-CcEEEEEec
Confidence            5565534567777776  444   222222222   2244566664 567776643

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=93.19  E-value=7.7  Score=38.88  Aligned_cols=175  Identities=9%  Similarity=-0.033  Sum_probs=95.0

Q ss_pred             CeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeE
Q 006913          140 SSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYF  218 (626)
Q Consensus       140 G~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~  218 (626)
                      ..|..|+.++-|..+|.. |+.+.....     + .   ....   .+....+....++.|.+-..++.+..++..+++.
T Consensus        49 ~~l~sg~~Dg~v~iwd~~~~~~~~~~~~-----~-~---v~~~---~~~~~~~s~s~D~~i~~w~~~~~~~~~~~~~~~~  116 (343)
T 3lrv_A           49 WVCMCRCEDGALHFTQLKDSKTITTITT-----P-N---PRTG---GEHPAIISRGPCNRLLLLYPGNQITILDSKTNKV  116 (343)
T ss_dssp             EEEEEEEETTEEEEEEESSSSCEEEEEE-----E-C---CCTT---CCCCSEEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred             CEEEEECCCCcEEEEECCCCcEEEEEec-----C-C---ceee---eeCCceEEecCCCeEEEEEccCceEEeecCCcce
Confidence            346667777888888864 765544310     0 0   0000   0011122222367777766677777888888764


Q ss_pred             EEEEcCCCCCcceeeeeec--CCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEE-EEEcCCeEE
Q 006913          219 NWIQDLSSFDKAFTLTPGN--NGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWIS-VGSLDGLLY  295 (626)
Q Consensus       219 ~w~~~~~s~~~v~sI~~D~--dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IW-VGT~~gGLy  295 (626)
                      ...........+.++....  +|.+.+....++.+..+|..+++......... ...+.++...++|.+. .|+.++.|.
T Consensus       117 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~-~~~i~~~~~~pdg~~lasg~~dg~i~  195 (343)
T 3lrv_A          117 LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKS-DVEYSSGVLHKDSLLLALYSPDGILD  195 (343)
T ss_dssp             EEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCS-SCCCCEEEECTTSCEEEEECTTSCEE
T ss_pred             eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC-CCceEEEEECCCCCEEEEEcCCCEEE
Confidence            4433322223456666666  67655533345788888988888754432221 1124456677677654 468889999


Q ss_pred             EEcCC-CCEE-EEeeccCCCCccccCceEEEEEEecCCcEE
Q 006913          296 SFSPS-GVLN-KFSKSDTSDSVIQSSPYWFHLLGPSIGLKA  334 (626)
Q Consensus       296 ~~d~~-g~~~-~~~~~~~~~~~ilssp~V~~Il~DsdG~Iw  334 (626)
                      .+|.. ++.. .....       .....|.++....+|...
T Consensus       196 iwd~~~~~~~~~~~~~-------~h~~~v~~l~fs~~g~~l  229 (343)
T 3lrv_A          196 VYNLSSPDQASSRFPV-------DEEAKIKEVKFADNGYWM  229 (343)
T ss_dssp             EEESSCTTSCCEECCC-------CTTSCEEEEEECTTSSEE
T ss_pred             EEECCCCCCCccEEec-------cCCCCEEEEEEeCCCCEE
Confidence            99964 4432 22220       012335566666666644

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.17  E-value=1.7  Score=46.92  Aligned_cols=147  Identities=16%  Similarity=0.201  Sum_probs=78.6

Q ss_pred             CeEEecCCeEEEEE-CC-eEEEEECCCCccccceeEEE-ecCCCCC-CCCCCeeEEEEEEc----CCeEEEEEc------
Q 006913           82 APVHGGTGEVYIVA-EN-RVLKVDLLKIGTSESATQVF-YGTGSGK-GGTGAIAGIAVSTS----SSSVYINVK------  147 (626)
Q Consensus        82 sp~iD~dG~IwVgT-~g-gL~~id~~~~~~~~~~~~~~-~~~~~~~-~~~~~~I~s~~~d~----dG~LwIgT~------  147 (626)
                      .+.++.+|+|||+. .+ .|+++++.++..    ..+. +...... ...+...+. ..+.    ++.||+...      
T Consensus        31 ~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~----~~~~~~~~~~~~~~g~~Gllgi-a~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           31 ALLWGPDNQIWLTERATGKILRVNPESGSV----KTVFQVPEIVNDADGQNGLLGF-AFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             EEEECTTSCEEEEETTTCEEEEECTTTCCE----EEEEECTTCCCCTTSSCSEEEE-EECTTTTTSCEEEEEEEEECTTC
T ss_pred             EEEEcCCCcEEEEEcCCCEEEEEECCCCcE----eEEecCCccccccCCCCceeEE-EECCCcCcCCEEEEEEeccccCC
Confidence            56677899999998 44 599998765421    1111 1111000 011223333 3333    789999753      


Q ss_pred             -------CCeEEEEeCC---CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcC-------------
Q 006913          148 -------GRALFAFMTH---GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT-------------  204 (626)
Q Consensus       148 -------~gGL~a~d~~---G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~-------------  204 (626)
                             ...|++++.+   +.+. ....++..++      ..  ..+....+++++ +|.|||+..             
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~-~~~~i~~~~p------~~--~~H~~~~l~f~p-DG~Lyv~~Gd~~~~~~~~~~~~  175 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLE-KPVDLLAGLP------SS--KDHQSGRLVIGP-DQKIYYTIGDQGRNQLAYLFLP  175 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEE-EEEEEEEEEC------CC--SSCCEEEEEECT-TSCEEEEECCTTTTSGGGTTSC
T ss_pred             CccccccccEEEEEEECCCCCCcC-CcEEEEEcCC------CC--CCCCCCeEeECC-CCeEEEEECCCCCCCccccccc
Confidence                   2367777642   2211 0000000111      00  112235577886 899999753             


Q ss_pred             --------------------CCeEEEEeCCCC------------eEEEEEcCCCCCcceeeeeecCCeEEEEEc
Q 006913          205 --------------------QGELYSLSAHSP------------YFNWIQDLSSFDKAFTLTPGNNGYLYVTIP  246 (626)
Q Consensus       205 --------------------~GgL~~ld~~tg------------~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~  246 (626)
                                          .|.|+++++++.            ..+|..   +......++.|.+|+||++..
T Consensus       176 ~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~---G~RNp~gla~dp~G~L~~~d~  246 (454)
T 1cru_A          176 NQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTL---GHRNPQGLAFTPNGKLLQSEQ  246 (454)
T ss_dssp             CCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEB---CCSEEEEEEECTTSCEEEEEE
T ss_pred             cccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEE---CCCCcceEEECCCCCEEEEec
Confidence                                256889988764            122322   123455677888899999874

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=92.97  E-value=0.24  Score=48.83  Aligned_cols=151  Identities=18%  Similarity=0.171  Sum_probs=85.6

Q ss_pred             EEEEEcCCeEEEEEcCCeEEEEeC-C-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEE
Q 006913          133 IAVSTSSSSVYINVKGRALFAFMT-H-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYS  210 (626)
Q Consensus       133 s~~~d~dG~LwIgT~~gGL~a~d~-~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~  210 (626)
                      .+....+|.||.. .++.||.+++ + +...|.- . ..    +.++.    +-+....+..|. +|.||+. .+|.||+
T Consensus        45 ~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~-s-~t----~IG~~----Gw~~F~a~~fD~-~G~LYav-~dG~iyr  111 (236)
T 1tl2_A           45 FLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMG-R-AK----KIGNG----GWNQFQFLFFDP-NGYLYAV-SKDKLYK  111 (236)
T ss_dssp             EEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHH-H-CE----EEECS----CGGGCSEEEECT-TSCEEEE-ETTEEEE
T ss_pred             eEEECCCccEEEE-eCCeEEEECCCCCCcccccc-c-cc----Eeccc----ccccceEEEECC-CCCEEEe-CCCEEEE
Confidence            3445568999988 5678999986 4 4444531 0 00    00000    001124577896 9999999 5689999


Q ss_pred             EeCC-CCeEEEEEcCC-----CCCcceeeeeecCCeEEEEEcCCCEEEEEEC-CCCcEEEEE---ecC-CCCCceeeEEE
Q 006913          211 LSAH-SPYFNWIQDLS-----SFDKAFTLTPGNNGYLYVTIPVRALVLALDT-SSGNILWHK---SVG-PLGSAEYAPVV  279 (626)
Q Consensus       211 ld~~-tg~~~w~~~~~-----s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~-~tG~~~w~~---~~~-~l~~~~sspvv  279 (626)
                      +++. ++.-.|..+-.     +-..+..+..+.+|.||..+ + +.++.-.+ .++...|..   .++ ..-+....++.
T Consensus       112 ~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-d-g~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f  189 (236)
T 1tl2_A          112 ASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-G-QQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFF  189 (236)
T ss_dssp             ESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-T-TEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEE
T ss_pred             eCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-C-CcEEecCCCCCCCcccccccceeccCCcceEEEEEE
Confidence            9872 23345643311     11234667888999999988 4 46654332 233233310   011 00123344567


Q ss_pred             eeCCeEEEEEcCCeEEEEcC
Q 006913          280 DSNGWISVGSLDGLLYSFSP  299 (626)
Q Consensus       280 D~dG~IWVGT~~gGLy~~d~  299 (626)
                      +++|+||..+ ++.||...+
T Consensus       190 ~~~G~l~~v~-~g~~Y~~~~  208 (236)
T 1tl2_A          190 SSVGTLFGVQ-GGKFYEDYP  208 (236)
T ss_dssp             CTTSCEEEEE-TTEEEEESC
T ss_pred             CCCCcEEEEe-CCeEEecCC
Confidence            7888888888 677776643

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=92.81  E-value=8.9  Score=38.62  Aligned_cols=151  Identities=7%  Similarity=-0.020  Sum_probs=77.4

Q ss_pred             eEEEEEEcCC-eEEEEEcCCeEEEEeCC-CcE--EEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCC
Q 006913          131 AGIAVSTSSS-SVYINVKGRALFAFMTH-GQL--LWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQG  206 (626)
Q Consensus       131 I~s~~~d~dG-~LwIgT~~gGL~a~d~~-G~~--~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~G  206 (626)
                      |..+....+| .|..++.++.+..++.+ +..  .....      +      +   ... ..++...+.+..|..|+.++
T Consensus        64 v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~------~------h---~~~-v~~v~~sp~~~~l~s~s~D~  127 (345)
T 3fm0_A           64 VRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLE------G------H---ENE-VKSVAWAPSGNLLATCSRDK  127 (345)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEEC------C------C---SSC-EEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEcc------C------C---CCC-ceEEEEeCCCCEEEEEECCC
Confidence            4444444444 46667777777777754 432  11110      0      0   011 13344443244566777788


Q ss_pred             eEEEEeCCCCeEE-EEEcCCC-CCcceeeeeecCCe-EEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCC
Q 006913          207 ELYSLSAHSPYFN-WIQDLSS-FDKAFTLTPGNNGY-LYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNG  283 (626)
Q Consensus       207 gL~~ld~~tg~~~-w~~~~~s-~~~v~sI~~D~dG~-LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG  283 (626)
                      .|..+|.+++... ....... ...+.++....+|. |..|+ .++.+..+|..++..........-...+.++..+++|
T Consensus       128 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s-~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g  206 (345)
T 3fm0_A          128 SVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASAS-YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSG  206 (345)
T ss_dssp             CEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEE-TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTS
T ss_pred             eEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEe-CCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCC
Confidence            8888887765321 1111111 22355555555664 45555 3456666665566433222222111235567777676


Q ss_pred             e-EEEEEcCCeEEEEc
Q 006913          284 W-ISVGSLDGLLYSFS  298 (626)
Q Consensus       284 ~-IWVGT~~gGLy~~d  298 (626)
                      . |..|+.++.|..++
T Consensus       207 ~~l~s~s~D~~v~iW~  222 (345)
T 3fm0_A          207 QRLASCSDDRTVRIWR  222 (345)
T ss_dssp             SEEEEEETTSCEEEEE
T ss_pred             CEEEEEeCCCeEEEec
Confidence            4 66677788777776

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=92.69  E-value=9.9  Score=38.85  Aligned_cols=189  Identities=12%  Similarity=0.029  Sum_probs=100.0

Q ss_pred             CeEEecCCeE-EEEE---CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeC-
Q 006913           82 APVHGGTGEV-YIVA---ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMT-  156 (626)
Q Consensus        82 sp~iD~dG~I-wVgT---~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~-  156 (626)
                      .+.+..||++ .+++   ++.|...|..++.     ....+..      .. .|..+....+|.+.+...++++..++. 
T Consensus       138 ~v~fSpDg~~la~as~~~d~~i~iwd~~~~~-----~~~~~~~------~~-~V~~v~fspdg~~l~s~s~~~~~~~~~~  205 (365)
T 4h5i_A          138 LVYISREGTVAAIASSKVPAIMRIIDPSDLT-----EKFEIET------RG-EVKDLHFSTDGKVVAYITGSSLEVISTV  205 (365)
T ss_dssp             EEEECTTSSCEEEEESCSSCEEEEEETTTTE-----EEEEEEC------SS-CCCEEEECTTSSEEEEECSSCEEEEETT
T ss_pred             EEEEcCCCCEEEEEECCCCCEEEEeECCCCc-----EEEEeCC------CC-ceEEEEEccCCceEEeccceeEEEEEec
Confidence            3455677875 4555   4567778988763     1222211      11 234444456777666555677888885 


Q ss_pred             CCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeE-EEEcCCC----eEEEEeCCCCeEEEE--EcC-CCCC
Q 006913          157 HGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSI-YISNTQG----ELYSLSAHSPYFNWI--QDL-SSFD  228 (626)
Q Consensus       157 ~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~L-wIGT~~G----gL~~ld~~tg~~~w~--~~~-~s~~  228 (626)
                      +|+.......    ..      +   ... ..++...+ ++.. ..++.++    -+..++...+.....  ... ....
T Consensus       206 ~~~~~~~~~~----~~------~---~~~-v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  270 (365)
T 4h5i_A          206 TGSCIARKTD----FD------K---NWS-LSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFK  270 (365)
T ss_dssp             TCCEEEEECC----CC------T---TEE-EEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCS
T ss_pred             cCcceeeeec----CC------C---CCC-EEEEEEcC-CCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCC
Confidence            4655433200    00      0   011 23344443 4544 4444333    244455444332211  111 1123


Q ss_pred             cceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeE-EEEEcCCeEEEEc
Q 006913          229 KAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWI-SVGSLDGLLYSFS  298 (626)
Q Consensus       229 ~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~I-WVGT~~gGLy~~d  298 (626)
                      .+.+++...||++.+....++.+..+|..+++.+.....+- ...+.++...+||.+ .-|+.++.|..++
T Consensus       271 ~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH-~~~V~~v~fSpdg~~laS~S~D~tvrvw~  340 (365)
T 4h5i_A          271 GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH-SFAITEVTISPDSTYVASVSAANTIHIIK  340 (365)
T ss_dssp             CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS-SSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred             CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc-cCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            46677777888655543345788889999998776542221 123566777778764 4467777777776

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=92.46  E-value=9.7  Score=38.20  Aligned_cols=108  Identities=11%  Similarity=0.110  Sum_probs=59.4

Q ss_pred             eEEEcCCCe-EEEEcC-CCeEEEEe--CCCC----e-EEE-----EEcCCCCCcceeeeeecCCe-EEEEEcCCCEEEEE
Q 006913          190 PVIDQCEGS-IYISNT-QGELYSLS--AHSP----Y-FNW-----IQDLSSFDKAFTLTPGNNGY-LYVTIPVRALVLAL  254 (626)
Q Consensus       190 pviD~~dG~-LwIGT~-~GgL~~ld--~~tg----~-~~w-----~~~~~s~~~v~sI~~D~dG~-LwVGT~~gG~l~al  254 (626)
                      +.+++ +|+ ||++.. ++.+..++  ..++    + +..     ............++.+.||+ ||++....+.+..+
T Consensus       160 ~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~  238 (361)
T 3scy_A          160 VRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAF  238 (361)
T ss_dssp             EEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEE
T ss_pred             EEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEE
Confidence            45665 564 888765 45566664  4443    2 211     11111112344567777885 88887555677777


Q ss_pred             ECCCCcEEEEEec--CCC-CCceeeEEEeeCCe-EEEEEcC--CeEEEEc
Q 006913          255 DTSSGNILWHKSV--GPL-GSAEYAPVVDSNGW-ISVGSLD--GLLYSFS  298 (626)
Q Consensus       255 D~~tG~~~w~~~~--~~l-~~~~sspvvD~dG~-IWVGT~~--gGLy~~d  298 (626)
                      +..+|.+......  .+. ......+.++++|+ ||++..+  +.|..|+
T Consensus       239 ~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~  288 (361)
T 3scy_A          239 RYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFK  288 (361)
T ss_dssp             EEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEE
T ss_pred             EecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEE
Confidence            7767765432211  110 11234677887885 7787765  4555554

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=92.25  E-value=9.9  Score=37.80  Aligned_cols=223  Identities=10%  Similarity=0.022  Sum_probs=114.9

Q ss_pred             EEeeCCEEEE-Ee-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEE-E-CCeEEEEECCCCccccceeEEE
Q 006913           43 LIGEDGKIYA-CS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIV-A-ENRVLKVDLLKIGTSESATQVF  117 (626)
Q Consensus        43 vid~dG~IwI-gS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVg-T-~ggL~~id~~~~~~~~~~~~~~  117 (626)
                      ....+|...+ |+ ++.+..+|. +++....+....  ..+.++....++.+.+. + ++.|...|..+..      ...
T Consensus        72 ~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~------~~~  143 (319)
T 3frx_A           72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHK--SDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC------LAT  143 (319)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS--SCEEEEEECTTSCEEEEEETTSCEEEEETTSCE------EEE
T ss_pred             EECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCC--CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe------EEE
Confidence            3335565444 55 667888887 776544332211  23445556667765554 4 6778888876531      111


Q ss_pred             ecCCCCCCCCCCeeEEEEEE-------cCCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccc
Q 006913          118 YGTGSGKGGTGAIAGIAVST-------SSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSV  189 (626)
Q Consensus       118 ~~~~~~~~~~~~~I~s~~~d-------~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~ss  189 (626)
                      +..     . ...+..+...       ....|..++.++-+..+|.. ++....+.      +      +   ...+ .+
T Consensus       144 ~~~-----h-~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~------~------h---~~~v-~~  201 (319)
T 3frx_A          144 LLG-----H-NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI------G------H---NSNI-NT  201 (319)
T ss_dssp             ECC-----C-SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEEC------C------C---CSCE-EE
T ss_pred             Eec-----c-CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeec------C------C---CCcE-EE
Confidence            110     1 1122222111       12246667777778888875 54433320      0      0   0111 33


Q ss_pred             eEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCC
Q 006913          190 PVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGP  269 (626)
Q Consensus       190 pviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~  269 (626)
                      +...+.+..|..|..++.|..+|..+++.......  ...+.+++...+|.+.++... ..+..++..++..........
T Consensus       202 ~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~  278 (319)
T 3frx_A          202 LTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--QDEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEF  278 (319)
T ss_dssp             EEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC--CSCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCC
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC--CCcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccc
Confidence            44444234566777788999999999876654332  234566677777765555433 455555544444433322110


Q ss_pred             --C----CCceeeEEEeeCCe-EEEEEcCCeEEEEc
Q 006913          270 --L----GSAEYAPVVDSNGW-ISVGSLDGLLYSFS  298 (626)
Q Consensus       270 --l----~~~~sspvvD~dG~-IWVGT~~gGLy~~d  298 (626)
                        .    .....++...++|. |..|+.++.|..++
T Consensus       279 ~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd  314 (319)
T 3frx_A          279 AGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ  314 (319)
T ss_dssp             TTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence              0    01133455555654 55566666555554

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=92.24  E-value=17  Score=40.38  Aligned_cols=65  Identities=12%  Similarity=0.063  Sum_probs=41.1

Q ss_pred             eeeeEEeeCCEEEEEeCCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEE-EEECCeEEEEECCC
Q 006913           39 LSKPLIGEDGKIYACSEKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVY-IVAENRVLKVDLLK  106 (626)
Q Consensus        39 ~Sspvid~dG~IwIgSdggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~Iw-VgT~ggL~~id~~~  106 (626)
                      ........++.+.++.++.++.+|. +++... .....  .....+....+|+.. .+.++.|+.++..+
T Consensus        84 v~~~~~spd~~~~~~~~~~i~~~d~~~~~~~~-l~~~~--~~~~~~~~SpdG~~la~~~~~~i~v~~~~~  150 (706)
T 2z3z_A           84 SFRTLDAGRGLVVLFTQGGLVGFDMLARKVTY-LFDTN--EETASLDFSPVGDRVAYVRNHNLYIARGGK  150 (706)
T ss_dssp             CEEEEETTTTEEEEEETTEEEEEETTTTEEEE-EECCT--TCCTTCEECTTSSEEEEEETTEEEEEECBC
T ss_pred             ceeEEECCCCeEEEEECCEEEEEECCCCceEE-ccCCc--ccccCCcCCCCCCEEEEEECCeEEEEecCc
Confidence            3445555567777777888999998 565432 22111  224466777788643 34488999998876

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=92.21  E-value=17  Score=40.35  Aligned_cols=99  Identities=18%  Similarity=0.046  Sum_probs=52.6

Q ss_pred             CeEEEEeCCCCeEEEEEcCC-CCCcceeeeeecCCe-EEEEEcCC----CEEEEEECCCC-cEEEEEe-cC-CCCCceee
Q 006913          206 GELYSLSAHSPYFNWIQDLS-SFDKAFTLTPGNNGY-LYVTIPVR----ALVLALDTSSG-NILWHKS-VG-PLGSAEYA  276 (626)
Q Consensus       206 GgL~~ld~~tg~~~w~~~~~-s~~~v~sI~~D~dG~-LwVGT~~g----G~l~alD~~tG-~~~w~~~-~~-~l~~~~ss  276 (626)
                      ..|+.+|.++++........ ....+..+....||+ |+++..+.    ..++.+|..+| ....... .. ........
T Consensus       235 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~  314 (706)
T 2z3z_A          235 VTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHP  314 (706)
T ss_dssp             EEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSC
T ss_pred             eEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCC
Confidence            46888999888765432211 112344555566775 77655332    37888998888 4332221 11 10011233


Q ss_pred             EEEee--CCe-EEEEEcCC--eEEEEcCCCCEE
Q 006913          277 PVVDS--NGW-ISVGSLDG--LLYSFSPSGVLN  304 (626)
Q Consensus       277 pvvD~--dG~-IWVGT~~g--GLy~~d~~g~~~  304 (626)
                      +...+  +|. +|++..++  .||.++.+++..
T Consensus       315 ~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~  347 (706)
T 2z3z_A          315 LTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLI  347 (706)
T ss_dssp             CEECTTCSSEEEEEECTTSSCEEEEEETTSCEE
T ss_pred             ceeecCCCCEEEEEEccCCccEEEEEECCCCEE
Confidence            55655  665 44444433  577777655443

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=92.16  E-value=2.4  Score=44.50  Aligned_cols=139  Identities=9%  Similarity=-0.083  Sum_probs=76.3

Q ss_pred             CeEEEEcCCCeEEEEeCCCCeEEEEEcC-CCCCcceeeeee-cCC-eEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCc
Q 006913          197 GSIYISNTQGELYSLSAHSPYFNWIQDL-SSFDKAFTLTPG-NNG-YLYVTIPVRALVLALDTSSGNILWHKSVGPLGSA  273 (626)
Q Consensus       197 G~LwIGT~~GgL~~ld~~tg~~~w~~~~-~s~~~v~sI~~D-~dG-~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~  273 (626)
                      ..|..|+.+|.|..+|..++...-.... +....+.++... .++ .|..++ .++.+...|..++..............
T Consensus       133 ~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~~~~~~  211 (435)
T 4e54_B          133 STVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASS-MEGTTRLQDFKGNILRVFASSDTINIW  211 (435)
T ss_dssp             TCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEEC-SSSCEEEEETTSCEEEEEECCSSCSCC
T ss_pred             CEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEe-CCCEEEEeeccCCceeEEeccCCCCcc
Confidence            4577788888899999877654332222 112345666654 355 455554 456777788766654433322211112


Q ss_pred             eeeEEEeeCC-eEEEEEcCCeEEEEcCCCCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEEeeecCee
Q 006913          274 EYAPVVDSNG-WISVGSLDGLLYSFSPSGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLMVVGQF  344 (626)
Q Consensus       274 ~sspvvD~dG-~IWVGT~~gGLy~~d~~g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~t~~Ggl  344 (626)
                      ..++...+++ .|..|+.++.|..+|.+++......        .....|.++....++.-++.++...|.+
T Consensus       212 ~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~--------~h~~~v~~v~~~p~~~~~~~s~s~d~~v  275 (435)
T 4e54_B          212 FCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLR--------MHKKKVTHVALNPCCDWFLATASVDQTV  275 (435)
T ss_dssp             CCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSB--------CCSSCEEEEEECTTCSSEEEEEETTSBC
T ss_pred             EEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEe--------cccceEEeeeecCCCceEEEEecCccee
Confidence            3445565555 5667888888999987664332111        1223355666555554334555444444

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=91.89  E-value=13  Score=38.56  Aligned_cols=101  Identities=11%  Similarity=-0.055  Sum_probs=58.9

Q ss_pred             CCeEEEEcCCCeEEEEeCCCC---eEEEEEcCCCCCcceeeeeecCCe--EEEEEcCCCEEEEEECCCC-cEEEEEecCC
Q 006913          196 EGSIYISNTQGELYSLSAHSP---YFNWIQDLSSFDKAFTLTPGNNGY--LYVTIPVRALVLALDTSSG-NILWHKSVGP  269 (626)
Q Consensus       196 dG~LwIGT~~GgL~~ld~~tg---~~~w~~~~~s~~~v~sI~~D~dG~--LwVGT~~gG~l~alD~~tG-~~~w~~~~~~  269 (626)
                      +..+..+..++.|..+|.+++   +....... ....+.++....++.  +.+|. ..+.+..+|..+. ......... 
T Consensus       244 ~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~v~~i~~~p~~~~~l~tg~-~dg~v~vwd~~~~~~~~~~~~~h-  320 (430)
T 2xyi_A          244 ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA-HTAEVNCLSFNPYSEFILATGS-ADKTVALWDLRNLKLKLHSFESH-  320 (430)
T ss_dssp             TTEEEEEETTSEEEEEETTCSCSSSCSEEEEC-CSSCEEEEEECSSCTTEEEEEE-TTSEEEEEETTCTTSCSEEEECC-
T ss_pred             CCEEEEEeCCCeEEEEECCCCCCCcceeEeec-CCCCeEEEEeCCCCCCEEEEEe-CCCeEEEEeCCCCCCCeEEeecC-
Confidence            344556777889999999876   22222211 112355666655553  44555 4578888897763 333332221 


Q ss_pred             CCCceeeEEEeeCC--eEEEEEcCCeEEEEcCC
Q 006913          270 LGSAEYAPVVDSNG--WISVGSLDGLLYSFSPS  300 (626)
Q Consensus       270 l~~~~sspvvD~dG--~IWVGT~~gGLy~~d~~  300 (626)
                       ...+.++...+++  .+..|+.++.|..+|..
T Consensus       321 -~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~  352 (430)
T 2xyi_A          321 -KDEIFQVQWSPHNETILASSGTDRRLHVWDLS  352 (430)
T ss_dssp             -SSCEEEEEECSSCTTEEEEEETTSCCEEEEGG
T ss_pred             -CCCEEEEEECCCCCCEEEEEeCCCcEEEEeCC
Confidence             1234556666666  36667788888888853

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=91.49  E-value=19  Score=39.52  Aligned_cols=154  Identities=10%  Similarity=0.053  Sum_probs=88.8

Q ss_pred             eeEEEEEEcCC--eEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCe-EEEEcCC
Q 006913          130 IAGIAVSTSSS--SVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGS-IYISNTQ  205 (626)
Q Consensus       130 ~I~s~~~d~dG--~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~-LwIGT~~  205 (626)
                      .+..+....++  .|..++.++-+..+|.. ++....+..            +   ... ..+....+ +|. |..|..+
T Consensus       149 ~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~------------H---~~~-V~~v~fsp-dg~~las~s~D  211 (611)
T 1nr0_A          149 AMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE------------H---TKF-VHSVRYNP-DGSLFASTGGD  211 (611)
T ss_dssp             CEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC------------C---SSC-EEEEEECT-TSSEEEEEETT
T ss_pred             CceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeecc------------c---cCc-eEEEEECC-CCCEEEEEECC
Confidence            34444444444  46677778888888864 544333200            0   011 23344554 454 5567778


Q ss_pred             CeEEEEeCCCCeEEEEEcC------CCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCC-CCCceeeEE
Q 006913          206 GELYSLSAHSPYFNWIQDL------SSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGP-LGSAEYAPV  278 (626)
Q Consensus       206 GgL~~ld~~tg~~~w~~~~------~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~-l~~~~sspv  278 (626)
                      +.|..+|..+++.......      .....+.++....+|...+....++.+...|..+++.......+. .........
T Consensus       212 ~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~  291 (611)
T 1nr0_A          212 GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII  291 (611)
T ss_dssp             SCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEE
T ss_pred             CcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEE
Confidence            8899999888766543211      112346677777788655443345788888988887765544331 001122233


Q ss_pred             EeeCCeEEEEEcCCeEEEEcCCC
Q 006913          279 VDSNGWISVGSLDGLLYSFSPSG  301 (626)
Q Consensus       279 vD~dG~IWVGT~~gGLy~~d~~g  301 (626)
                      .+ ...+..++.++.+..++...
T Consensus       292 ~~-~~~l~s~s~d~~i~~~~~~~  313 (611)
T 1nr0_A          292 WT-KQALVSISANGFINFVNPEL  313 (611)
T ss_dssp             EC-SSCEEEEETTCCEEEEETTT
T ss_pred             Ec-CCEEEEEeCCCcEEEEeCCC
Confidence            33 56777788888888888753

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=91.39  E-value=7.3  Score=41.74  Aligned_cols=113  Identities=13%  Similarity=0.004  Sum_probs=74.7

Q ss_pred             cCCeEEEEEcC-----CeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcC-------
Q 006913          138 SSSSVYINVKG-----RALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT-------  204 (626)
Q Consensus       138 ~dG~LwIgT~~-----gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~-------  204 (626)
                      ....+|+....     +.|..+|+. ++.+..+.     .+      .      .. .+.+.+.+..||+++.       
T Consensus        83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~-----vG------~------~P-gia~SpDgk~lyVan~~~~~~~~  144 (426)
T 3c75_H           83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTD-----GG------F------LP-HPVAAEDGSFFAQASTVFERIAR  144 (426)
T ss_dssp             CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEE-----EC------S------SC-EEEECTTSSCEEEEEEEEEETTE
T ss_pred             CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEE-----CC------C------CC-ceEECCCCCEEEEEecccccccc
Confidence            44678888653     479999975 88777641     11      0      01 2455543567999873       


Q ss_pred             ---CCeEEEEeCCCCeEEEEEcCC-C-----CCcceeeeeecCC-eEEEEEcC-CCEEEEEECCCCcEEEEEecC
Q 006913          205 ---QGELYSLSAHSPYFNWIQDLS-S-----FDKAFTLTPGNNG-YLYVTIPV-RALVLALDTSSGNILWHKSVG  268 (626)
Q Consensus       205 ---~GgL~~ld~~tg~~~w~~~~~-s-----~~~v~sI~~D~dG-~LwVGT~~-gG~l~alD~~tG~~~w~~~~~  268 (626)
                         ++.|..||..++++......+ .     ......++.+.|| +|||+... .+.+..+|..++++......+
T Consensus       145 G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~  219 (426)
T 3c75_H          145 GKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVP  219 (426)
T ss_dssp             EEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC
T ss_pred             CCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcC
Confidence               457999999998876554432 0     1123345667777 79998743 468899999999988766654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=91.37  E-value=15  Score=38.15  Aligned_cols=156  Identities=7%  Similarity=-0.003  Sum_probs=74.6

Q ss_pred             ccCeEEecCCe--EEEEE-CCeEEEEECCCCcccccee--EEEecCCCCCCCCCCeeEEEEEEc-CCe-EEEEEcCCeEE
Q 006913           80 GTAPVHGGTGE--VYIVA-ENRVLKVDLLKIGTSESAT--QVFYGTGSGKGGTGAIAGIAVSTS-SSS-VYINVKGRALF  152 (626)
Q Consensus        80 ~~sp~iD~dG~--IwVgT-~ggL~~id~~~~~~~~~~~--~~~~~~~~~~~~~~~~I~s~~~d~-dG~-LwIgT~~gGL~  152 (626)
                      +.++....++.  |..+. ++.|..++...........  ...+.     .. ...+..+.... ++. +..++.++.|.
T Consensus       184 v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-----~h-~~~v~~v~~~p~~~~~l~s~~~dg~i~  257 (430)
T 2xyi_A          184 GYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFT-----GH-TAVVEDVAWHLLHESLFGSVADDQKLM  257 (430)
T ss_dssp             CCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEEC-----CC-SSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred             eEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeec-----CC-CCCEeeeEEeCCCCCEEEEEeCCCeEE
Confidence            34555555554  44455 6788888887632100000  00110     11 12344433333 444 44566778888


Q ss_pred             EEeCC-C---cEEEEECCcccccccccccccCCCCCccccceEEEcCCC-eEEEEcCCCeEEEEeCCCC-eEEEEEcCCC
Q 006913          153 AFMTH-G---QLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEG-SIYISNTQGELYSLSAHSP-YFNWIQDLSS  226 (626)
Q Consensus       153 a~d~~-G---~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG-~LwIGT~~GgL~~ld~~tg-~~~w~~~~~s  226 (626)
                      .+|.. +   +......      .      +   ... ..++...+.+. .+..|..+|.|..+|.++. ........ .
T Consensus       258 i~d~~~~~~~~~~~~~~------~------~---~~~-v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~-h  320 (430)
T 2xyi_A          258 IWDTRNNNTSKPSHTVD------A------H---TAE-VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES-H  320 (430)
T ss_dssp             EEETTCSCSSSCSEEEE------C------C---SSC-EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC-C
T ss_pred             EEECCCCCCCcceeEee------c------C---CCC-eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec-C
Confidence            88864 3   2322210      0      0   011 13344443123 3567878889999998873 22221111 1


Q ss_pred             CCcceeeeeecCC-eEEEEEcCCCEEEEEECCC
Q 006913          227 FDKAFTLTPGNNG-YLYVTIPVRALVLALDTSS  258 (626)
Q Consensus       227 ~~~v~sI~~D~dG-~LwVGT~~gG~l~alD~~t  258 (626)
                      ...+.++....+| .+++.....+.+..+|..+
T Consensus       321 ~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          321 KDEIFQVQWSPHNETILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             SSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred             CCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence            2235566665556 3444332345666666544

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=91.32  E-value=11  Score=42.89  Aligned_cols=102  Identities=9%  Similarity=0.020  Sum_probs=59.9

Q ss_pred             CCeEEEEcCCCeEEEEeCCCCeEEEEEcCC-CCCcceeeeeecC--C-eEEEEEcCCCEEEEEECCCCcEE--EEEecCC
Q 006913          196 EGSIYISNTQGELYSLSAHSPYFNWIQDLS-SFDKAFTLTPGNN--G-YLYVTIPVRALVLALDTSSGNIL--WHKSVGP  269 (626)
Q Consensus       196 dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~-s~~~v~sI~~D~d--G-~LwVGT~~gG~l~alD~~tG~~~--w~~~~~~  269 (626)
                      +..|..|+.+|.|..+|.++++..-..... ....+.++....+  | .+.+|+ .++.+..+|..++...  ...... 
T Consensus        67 ~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs-~dg~I~vwdl~~~~~~~~~~~~~~-  144 (753)
T 3jro_A           67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVAS-SDGKVSVVEFKENGTTSPIIIDAH-  144 (753)
T ss_dssp             CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE-TTSEEEEEECCSSSCCCCEEEECC-
T ss_pred             CCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEe-CCCcEEEEEeecCCCcceeEeecC-
Confidence            345777888888999999887532222211 1234556655544  5 455555 5678888887766321  111111 


Q ss_pred             CCCceeeEEEee--------------CCeEEEEEcCCeEEEEcCC
Q 006913          270 LGSAEYAPVVDS--------------NGWISVGSLDGLLYSFSPS  300 (626)
Q Consensus       270 l~~~~sspvvD~--------------dG~IWVGT~~gGLy~~d~~  300 (626)
                       ...+.++...+              ...+.+|+.++.|..+|..
T Consensus       145 -~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~  188 (753)
T 3jro_A          145 -AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN  188 (753)
T ss_dssp             -SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEE
T ss_pred             -CCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEecc
Confidence             11233444443              4568888989989988853

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=91.07  E-value=21  Score=39.20  Aligned_cols=225  Identities=9%  Similarity=0.017  Sum_probs=123.4

Q ss_pred             EEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEE-E-CCeEEEEECCCCccccceeEEEecCCC-C-
Q 006913           50 IYACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIV-A-ENRVLKVDLLKIGTSESATQVFYGTGS-G-  123 (626)
Q Consensus        50 IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVg-T-~ggL~~id~~~~~~~~~~~~~~~~~~~-~-  123 (626)
                      |..|+ ++.+..+|. +++....+. .. ...+.++....+|.+.+. . ++.|...|..++..     ...+.... . 
T Consensus       163 l~s~s~D~~v~lwd~~~~~~~~~l~-~H-~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~-----~~~~~~~~~~~  235 (611)
T 1nr0_A          163 IISGSDDNTVAIFEGPPFKFKSTFG-EH-TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK-----TGVFEDDSLKN  235 (611)
T ss_dssp             EEEEETTSCEEEEETTTBEEEEEEC-CC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----EEECBCTTSSS
T ss_pred             EEEEeCCCeEEEEECCCCeEeeeec-cc-cCceEEEEECCCCCEEEEEECCCcEEEEECCCCcE-----eeeeccccccc
Confidence            44455 556777776 554433222 11 123445666678886664 3 78888889776531     11111100 0 


Q ss_pred             CCCCCCeeEEEEEEcCCe-EEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEE
Q 006913          124 KGGTGAIAGIAVSTSSSS-VYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYI  201 (626)
Q Consensus       124 ~~~~~~~I~s~~~d~dG~-LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwI  201 (626)
                      ....+ .|..+....+|. |..++.++-+..+|.. ++....+..     +      ... ... ......+  +..+..
T Consensus       236 ~~h~~-~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~-----~------~~~-~~~-~~~~~~~--~~~l~s  299 (611)
T 1nr0_A          236 VAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV-----G------TRI-EDQ-QLGIIWT--KQALVS  299 (611)
T ss_dssp             CSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-----C------SSG-GGC-EEEEEEC--SSCEEE
T ss_pred             cccCC-CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecC-----C------CCc-cce-eEEEEEc--CCEEEE
Confidence            01222 344444445554 5566777778888975 665443200     0      000 000 1112223  566777


Q ss_pred             EcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCe-EEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEe
Q 006913          202 SNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGY-LYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVD  280 (626)
Q Consensus       202 GT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~-LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD  280 (626)
                      +..++.+..+|..++....... +....+.+++...||. |..++ .++.+...|..++.......... ...+.++...
T Consensus       300 ~s~d~~i~~~~~~~~~~~~~~~-gh~~~v~~l~~spdg~~l~s~s-~D~~v~~Wd~~~~~~~~~~~~~h-~~~v~~~~~s  376 (611)
T 1nr0_A          300 ISANGFINFVNPELGSIDQVRY-GHNKAITALSSSADGKTLFSAD-AEGHINSWDISTGISNRVFPDVH-ATMITGIKTT  376 (611)
T ss_dssp             EETTCCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCCEEECSSCSC-SSCEEEEEEC
T ss_pred             EeCCCcEEEEeCCCCCcceEEc-CCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEECCCCceeeecccCC-cceEEEEEEC
Confidence            7788889999988876433221 1223466777777775 55555 45678888988887643221111 1234445555


Q ss_pred             eCCeEEEEEcCCeEEEEcCC
Q 006913          281 SNGWISVGSLDGLLYSFSPS  300 (626)
Q Consensus       281 ~dG~IWVGT~~gGLy~~d~~  300 (626)
                      +++.+..++.++.+..++..
T Consensus       377 ~~~~l~s~s~d~~v~~w~~~  396 (611)
T 1nr0_A          377 SKGDLFTVSWDDHLKVVPAG  396 (611)
T ss_dssp             TTSCEEEEETTTEEEEECSS
T ss_pred             CCCcEEEEEcCCceEEeecC
Confidence            67888888888888888754

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=90.52  E-value=15  Score=36.68  Aligned_cols=192  Identities=11%  Similarity=-0.021  Sum_probs=101.7

Q ss_pred             ccCeEEecCCeEEEE-E-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcC-CeEEEEEcCCeEEEEeC
Q 006913           80 GTAPVHGGTGEVYIV-A-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSS-SSVYINVKGRALFAFMT  156 (626)
Q Consensus        80 ~~sp~iD~dG~IwVg-T-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~d-G~LwIgT~~gGL~a~d~  156 (626)
                      +.++....++.+.+. . ++.|...|..++..     ...+.     .... .+..+....+ ..|..++.++.+..+|.
T Consensus        79 V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~-----~~~~~-----~h~~-~v~~v~~sp~~~~l~s~~~d~~i~~wd~  147 (343)
T 2xzm_R           79 VSDLALSQENCFAISSSWDKTLRLWDLRTGTT-----YKRFV-----GHQS-EVYSVAFSPDNRQILSAGAEREIKLWNI  147 (343)
T ss_dssp             EEEEEECSSTTEEEEEETTSEEEEEETTSSCE-----EEEEE-----CCCS-CEEEEEECSSTTEEEEEETTSCEEEEES
T ss_pred             eEEEEECCCCCEEEEEcCCCcEEEEECCCCcE-----EEEEc-----CCCC-cEEEEEECCCCCEEEEEcCCCEEEEEec
Confidence            444555667765554 4 78888889877531     11111     1112 3344433344 45677777888888887


Q ss_pred             CCcEEEEECCcccccccccccccCCCCCccccceEEEc----------CCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCC
Q 006913          157 HGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQ----------CEGSIYISNTQGELYSLSAHSPYFNWIQDLSS  226 (626)
Q Consensus       157 ~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~----------~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s  226 (626)
                      .+........       ..  .+   ...+ .+....+          ....+..+..++.|..+|.+. +...... ..
T Consensus       148 ~~~~~~~~~~-------~~--~~---~~~v-~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~-~h  212 (343)
T 2xzm_R          148 LGECKFSSAE-------KE--NH---SDWV-SCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QIRYTFK-AH  212 (343)
T ss_dssp             SSCEEEECCT-------TT--SC---SSCE-EEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-EEEEEEE-CC
T ss_pred             cCCceeeeec-------cc--CC---Ccee-eeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-ceeEEEc-Cc
Confidence            6544332100       00  00   0011 1122211          013567777888899998554 4333221 11


Q ss_pred             CCcceeeeeecCCeEEEEEcCCCEEEEEECCC-CcEEEEEecCCCCCceeeEEEeeCCeEEEEEcCCeEEEEcCC
Q 006913          227 FDKAFTLTPGNNGYLYVTIPVRALVLALDTSS-GNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPS  300 (626)
Q Consensus       227 ~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~t-G~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~  300 (626)
                      ...+.++....+|...+....++.+...|..+ +........+   ..+..+...+++.+..++.++++..++..
T Consensus       213 ~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~---~~v~~v~~sp~~~~la~~~d~~v~iw~~~  284 (343)
T 2xzm_R          213 ESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAG---STINQIAFNPKLQWVAVGTDQGVKIFNLM  284 (343)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECS---SCEEEEEECSSSCEEEEEESSCEEEEESS
T ss_pred             cccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCC---CcEEEEEECCCCCEEEEECCCCEEEEEeC
Confidence            23456677777775444333457888788633 2222222222   23455677777877666667889988853

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=90.52  E-value=16  Score=36.98  Aligned_cols=136  Identities=13%  Similarity=0.074  Sum_probs=70.0

Q ss_pred             eEEEcCCC-eEEEEcCCCeEEEEeCC-CCeEEEEEcCCCCCcceeeeeecCCe-EEEEEc--------------CCCEEE
Q 006913          190 PVIDQCEG-SIYISNTQGELYSLSAH-SPYFNWIQDLSSFDKAFTLTPGNNGY-LYVTIP--------------VRALVL  252 (626)
Q Consensus       190 pviD~~dG-~LwIGT~~GgL~~ld~~-tg~~~w~~~~~s~~~v~sI~~D~dG~-LwVGT~--------------~gG~l~  252 (626)
                      +.+++ +| .||+++.+ .+..++.+ +|+...............+..+.||+ ||+.+.              .++.+.
T Consensus        45 ~a~sp-dg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~  122 (365)
T 1jof_A           45 MTFDH-ERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGN  122 (365)
T ss_dssp             EEECT-TSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEE
T ss_pred             EEECC-CCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEE
Confidence            45565 55 48888766 78888876 66664332211101233455677887 344221              234555


Q ss_pred             EEECC-CCcEEEEEec---CCCCCceeeEEEeeCCe-EEEEEc-CCeEEEEcC--CCCEEEEeeccCCCCccccCceEEE
Q 006913          253 ALDTS-SGNILWHKSV---GPLGSAEYAPVVDSNGW-ISVGSL-DGLLYSFSP--SGVLNKFSKSDTSDSVIQSSPYWFH  324 (626)
Q Consensus       253 alD~~-tG~~~w~~~~---~~l~~~~sspvvD~dG~-IWVGT~-~gGLy~~d~--~g~~~~~~~~~~~~~~ilssp~V~~  324 (626)
                      .++.. +|+.......   .. ......+..+++|. +|++.. ++.|+.++.  +|+...........    ....+++
T Consensus       123 v~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~----~g~~p~~  197 (365)
T 1jof_A          123 VFSVSETGKLEKNVQNYEYQE-NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD----PGDHPRW  197 (365)
T ss_dssp             EEEECTTCCEEEEEEEEECCT-TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS----TTCCEEE
T ss_pred             EEccCCCCcCcceEeeEEeCC-CCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC----CCCCCCE
Confidence            55543 4655422211   11 12345677888885 777664 467888875  35543322110000    0223456


Q ss_pred             EEEecCCc
Q 006913          325 LLGPSIGL  332 (626)
Q Consensus       325 Il~DsdG~  332 (626)
                      +..+.+|.
T Consensus       198 ~~~spdg~  205 (365)
T 1jof_A          198 VAMHPTGN  205 (365)
T ss_dssp             EEECTTSS
T ss_pred             eEECCCCC
Confidence            77777885

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=90.21  E-value=18  Score=37.01  Aligned_cols=164  Identities=9%  Similarity=0.038  Sum_probs=87.1

Q ss_pred             EEEEEEcCCeEEEEEcCCeEEEEeCC-CcEEEEE-CCcccccccccccccCCCCCccccceEEEcCC-CeEEEEcCCCeE
Q 006913          132 GIAVSTSSSSVYINVKGRALFAFMTH-GQLLWSA-GPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCE-GSIYISNTQGEL  208 (626)
Q Consensus       132 ~s~~~d~dG~LwIgT~~gGL~a~d~~-G~~~w~~-~~~~~~~~~~~~~~~~l~~~~i~sspviD~~d-G~LwIGT~~GgL  208 (626)
                      ..+....++.+++...++.|..+|.. +...+.. ......+  .   .+   ... ..++...+.+ ..|..|+.+|.|
T Consensus       181 ~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~---~~---~~~-v~~~~~~p~~~~~l~s~~~dg~i  251 (447)
T 3dw8_B          181 NSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANM--E---EL---TEV-ITAAEFHPNSCNTFVYSSSKGTI  251 (447)
T ss_dssp             CEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSG--G---GC---CCC-EEEEEECSSCTTEEEEEETTSCE
T ss_pred             EEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccc--c---cc---Ccc-eEEEEECCCCCcEEEEEeCCCeE
Confidence            33334456665554467778888875 4333321 0000000  0   00   111 2334455423 467788888889


Q ss_pred             EEEeCCCCeE----EEEEcCCCC-----------CcceeeeeecCCeEEEEEcCCCEEEEEECCC-CcEEEEEecCC-CC
Q 006913          209 YSLSAHSPYF----NWIQDLSSF-----------DKAFTLTPGNNGYLYVTIPVRALVLALDTSS-GNILWHKSVGP-LG  271 (626)
Q Consensus       209 ~~ld~~tg~~----~w~~~~~s~-----------~~v~sI~~D~dG~LwVGT~~gG~l~alD~~t-G~~~w~~~~~~-l~  271 (626)
                      ..+|.++++.    .........           ..+.++....+|.+.+.... +.+..+|..+ +.......... ..
T Consensus       252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~  330 (447)
T 3dw8_B          252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLR  330 (447)
T ss_dssp             EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGT
T ss_pred             EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccc
Confidence            9999988764    222111110           14666777778866655545 7888888775 55433222110 00


Q ss_pred             C---------c---eeeEEEeeCC-eEEEEEcCCeEEEEcCC-CCEEE
Q 006913          272 S---------A---EYAPVVDSNG-WISVGSLDGLLYSFSPS-GVLNK  305 (626)
Q Consensus       272 ~---------~---~sspvvD~dG-~IWVGT~~gGLy~~d~~-g~~~~  305 (626)
                      .         .   ...+...++| .|..|+.++.|+.+|.. ++...
T Consensus       331 ~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~  378 (447)
T 3dw8_B          331 SKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT  378 (447)
T ss_dssp             TTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE
T ss_pred             ccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee
Confidence            0         0   1124555565 47778888999999975 55443

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=90.04  E-value=14  Score=35.59  Aligned_cols=206  Identities=8%  Similarity=-0.032  Sum_probs=93.2

Q ss_pred             eeeEEeeCCE-EEEEe-CCcEEEEcC-CCC----EEEEEeCCCCCCcccCeEEec--CCeE-EEEE-CCeEEEEECCCCc
Q 006913           40 SKPLIGEDGK-IYACS-EKTLFAFES-NGT----IAWSLDLDFTCNIGTAPVHGG--TGEV-YIVA-ENRVLKVDLLKIG  108 (626)
Q Consensus        40 Sspvid~dG~-IwIgS-dggL~a~d~-~G~----~~W~~~~~~~~~i~~sp~iD~--dG~I-wVgT-~ggL~~id~~~~~  108 (626)
                      .......+|. |..|+ ++.+..+|. ++.    ....+.. . ...+.++....  ++.+ ..++ ++.|..+|..++.
T Consensus        15 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~-~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~   92 (351)
T 3f3f_A           15 HDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRA-H-DSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQ   92 (351)
T ss_dssp             EEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEEC-C-SSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTS
T ss_pred             eEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceecc-C-CCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCc
Confidence            3444445665 44455 556777775 332    2211111 1 12233444443  3554 4455 6778888876642


Q ss_pred             cccc----eeEEEecCCCCCCCCCCeeEEEEEEc---CCeEEEEEcCCeEEEEeCC-CcEE--EEECCcccccccccccc
Q 006913          109 TSES----ATQVFYGTGSGKGGTGAIAGIAVSTS---SSSVYINVKGRALFAFMTH-GQLL--WSAGPVLDQLGYRQGCT  178 (626)
Q Consensus       109 ~~~~----~~~~~~~~~~~~~~~~~~I~s~~~d~---dG~LwIgT~~gGL~a~d~~-G~~~--w~~~~~~~~~~~~~~~~  178 (626)
                      ....    .....+.     .... .+..+....   +..|..++.++.|..+|.. ++..  +............   .
T Consensus        93 ~~~~~~~~~~~~~~~-----~~~~-~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~---~  163 (351)
T 3f3f_A           93 EECSGRRWNKLCTLN-----DSKG-SLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP---P  163 (351)
T ss_dssp             CTTSSCSEEEEEEEC-----CCSS-CEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC---C
T ss_pred             ccccccCcceeeeec-----ccCC-ceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccc---c
Confidence            1000    0011111     1112 333333333   4457777888889899853 4321  1110000000000   0


Q ss_pred             cCCCCCccccceEEEcC---CCeEEEEcCCCeEEEEeCCCCeEEEEEcCCC-CCcceeeeeecCC----e-EEEEEcCCC
Q 006913          179 KTDVDCYFTSVPVIDQC---EGSIYISNTQGELYSLSAHSPYFNWIQDLSS-FDKAFTLTPGNNG----Y-LYVTIPVRA  249 (626)
Q Consensus       179 ~~l~~~~i~sspviD~~---dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s-~~~v~sI~~D~dG----~-LwVGT~~gG  249 (626)
                      ... ... ..++...+.   +..+.+++.++.+...+...+.......... ...+.++....+|    . |..+. .++
T Consensus       164 ~~~-~~~-~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~-~dg  240 (351)
T 3f3f_A          164 ANH-LQS-DFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC-KDG  240 (351)
T ss_dssp             SSC-SCC-CEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEE-TTS
T ss_pred             CCc-ccc-eeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEc-CCC
Confidence            000 001 112222211   4567778778777766666666543333222 2345666666665    4 44444 445


Q ss_pred             EEEEEECCCC
Q 006913          250 LVLALDTSSG  259 (626)
Q Consensus       250 ~l~alD~~tG  259 (626)
                      .+..+|..++
T Consensus       241 ~i~iwd~~~~  250 (351)
T 3f3f_A          241 RIRIFKITEK  250 (351)
T ss_dssp             CEEEEEEEEC
T ss_pred             eEEEEeCCCC
Confidence            6666665444

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=88.63  E-value=23  Score=36.14  Aligned_cols=167  Identities=8%  Similarity=-0.082  Sum_probs=82.3

Q ss_pred             ccCeEEecCCeEEEEE-CCeEEEEECCCCccccceeEEE-ecCCC--CCCCCCCeeEEEEEEcCC--eEEEEEcCCeEEE
Q 006913           80 GTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSESATQVF-YGTGS--GKGGTGAIAGIAVSTSSS--SVYINVKGRALFA  153 (626)
Q Consensus        80 ~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~-~~~~~--~~~~~~~~I~s~~~d~dG--~LwIgT~~gGL~a  153 (626)
                      +.++....+|++.+.. ++.|..+|.....     ..+. +...+  .... ...+..+....++  .|..++.++.|..
T Consensus       180 v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~s~~~dg~i~i  253 (447)
T 3dw8_B          180 INSISINSDYETYLSADDLRINLWHLEITD-----RSFNIVDIKPANMEEL-TEVITAAEFHPNSCNTFVYSSSKGTIRL  253 (447)
T ss_dssp             CCEEEECTTSSEEEEECSSEEEEEETTEEE-----EEEEEEECCCSSGGGC-CCCEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred             eEEEEEcCCCCEEEEeCCCeEEEEECCCCC-----ceeeeeeccccccccc-CcceEEEEECCCCCcEEEEEeCCCeEEE
Confidence            3445556677766655 6788888887321     1111 10000  0111 2234444444444  5777788888889


Q ss_pred             EeCC-CcE----EEEECCcccccccccccccCCC-----CCccccceEEEcCCCe-EEEEcCCCeEEEEeCCC-CeEEEE
Q 006913          154 FMTH-GQL----LWSAGPVLDQLGYRQGCTKTDV-----DCYFTSVPVIDQCEGS-IYISNTQGELYSLSAHS-PYFNWI  221 (626)
Q Consensus       154 ~d~~-G~~----~w~~~~~~~~~~~~~~~~~~l~-----~~~i~sspviD~~dG~-LwIGT~~GgL~~ld~~t-g~~~w~  221 (626)
                      +|.. ++.    ...+..       ... .....     ... ..++...+ ++. |..++. +.|..+|.++ ++....
T Consensus       254 wd~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~~~~-v~~~~~s~-~g~~l~~~~~-~~v~iwd~~~~~~~~~~  322 (447)
T 3dw8_B          254 CDMRASALCDRHSKLFEE-------PED-PSNRSFFSEIISS-ISDVKFSH-SGRYMMTRDY-LSVKVWDLNMENRPVET  322 (447)
T ss_dssp             EETTTCSSSCTTCEEECC-------C------CCHHHHHTTC-EEEEEECT-TSSEEEEEES-SEEEEEETTCCSSCSCC
T ss_pred             EECcCCccccceeeEecc-------CCC-ccccccccccCce-EEEEEECC-CCCEEEEeeC-CeEEEEeCCCCccccce
Confidence            9964 543    222210       000 00000     001 13344554 444 555655 8899999876 443221


Q ss_pred             EcCCC--C---------Cc---ceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEE
Q 006913          222 QDLSS--F---------DK---AFTLTPGNNGYLYVTIPVRALVLALDTSSGNILW  263 (626)
Q Consensus       222 ~~~~s--~---------~~---v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w  263 (626)
                      .....  .         +.   +..+....+|...+....++.+..+|..+++...
T Consensus       323 ~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~  378 (447)
T 3dw8_B          323 YQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT  378 (447)
T ss_dssp             EESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE
T ss_pred             eeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee
Confidence            11100  0         00   1124555667544443356789899998888764

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=88.38  E-value=19  Score=34.72  Aligned_cols=260  Identities=8%  Similarity=-0.039  Sum_probs=130.4

Q ss_pred             CCEEEEEeCCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEE-EE-CCeEEEEECCCCccccceeEEEecCCCC
Q 006913           47 DGKIYACSEKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYI-VA-ENRVLKVDLLKIGTSESATQVFYGTGSG  123 (626)
Q Consensus        47 dG~IwIgSdggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwV-gT-~ggL~~id~~~~~~~~~~~~~~~~~~~~  123 (626)
                      ++.|-+|.++.+..+|. +|+....+........+.++....+|+..+ |+ ++.|...+..+++.     ...+..   
T Consensus        36 ~~~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~-----~~~~~~---  107 (318)
T 4ggc_A           36 GNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR-----LRNMTS---  107 (318)
T ss_dssp             TSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-----EEEEEC---
T ss_pred             CCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee-----EEEecC---
Confidence            45444566888999998 888765444332222345666677777555 45 77888889887631     111111   


Q ss_pred             CCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC-C-cEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEE
Q 006913          124 KGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH-G-QLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYI  201 (626)
Q Consensus       124 ~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~-G-~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwI  201 (626)
                        ... .+.. .......+..++.++.+...+.. + .......      +      +.   .. .........+..|..
T Consensus       108 --h~~-~~~~-~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~------~------~~---~~-~~~~~~~~~~~~l~s  167 (318)
T 4ggc_A          108 --HSA-RVGS-LSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS------G------HS---QE-VCGLRWAPDGRHLAS  167 (318)
T ss_dssp             --CSS-CEEE-EEEETTEEEEEETTSEEEEEETTSSSCEEEEEE------C------CS---SC-EEEEEECTTSSEEEE
T ss_pred             --ccc-eEEE-eecCCCEEEEEecCCceEeeecCCCceeEEEEc------C------cc---Cc-eEEEEEcCCCCEEEE
Confidence              111 1222 22234456666665555555543 2 2221110      0      00   01 112233332445677


Q ss_pred             EcCCCeEEEEeCCCCeEEEE---EcCCCCCcceeeee--ecCCeEEEEEc-CCCEEEEEECCCCcEEEEEecCCCCCcee
Q 006913          202 SNTQGELYSLSAHSPYFNWI---QDLSSFDKAFTLTP--GNNGYLYVTIP-VRALVLALDTSSGNILWHKSVGPLGSAEY  275 (626)
Q Consensus       202 GT~~GgL~~ld~~tg~~~w~---~~~~s~~~v~sI~~--D~dG~LwVGT~-~gG~l~alD~~tG~~~w~~~~~~l~~~~s  275 (626)
                      +..++.|..+|..+++....   ........+..+..  +....+++++. ..+.+...|..++..........   ...
T Consensus       168 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~---~v~  244 (318)
T 4ggc_A          168 GGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS---QVC  244 (318)
T ss_dssp             EETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSS---CEE
T ss_pred             EecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccccee---eee
Confidence            77788888888877543211   00011122333332  22334444442 23466667776666554433321   122


Q ss_pred             eEEEee-CCeEEEEE--cCCeEEEEcCC-CCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEEeeecCeeEE
Q 006913          276 APVVDS-NGWISVGS--LDGLLYSFSPS-GVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLMVVGQFSS  346 (626)
Q Consensus       276 spvvD~-dG~IWVGT--~~gGLy~~d~~-g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~t~~Ggl~~  346 (626)
                      ...... .+.+.+++  .++.|+.+|.. ++......   .     ....|.++....+|.+. .+++..|.+..
T Consensus       245 ~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~---g-----H~~~V~~l~~spdg~~l-~S~s~D~~v~i  310 (318)
T 4ggc_A          245 SILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK---G-----HTSRVLSLTMSPDGATV-ASAAADETLRL  310 (318)
T ss_dssp             EEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC---C-----CSSCEEEEEECTTSSCE-EEEETTTEEEE
T ss_pred             eeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc---C-----CCCCEEEEEEcCCCCEE-EEEecCCeEEE
Confidence            233333 44566655  57789999864 65554332   1     12346677767777754 55555555443

>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*

Probab=88.33  E-value=19  Score=40.01  Aligned_cols=151  Identities=15%  Similarity=0.122  Sum_probs=85.4

Q ss_pred             CeEEEEeCCCcEEEEECCcccccccccccccCC-CCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCC-
Q 006913          149 RALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTD-VDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSS-  226 (626)
Q Consensus       149 gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l-~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s-  226 (626)
                      .+.+.+|.+|.++|..... ..+...   ...+ ....+ ....... +|.+.++.. ..++.+|..+ ++.|....+. 
T Consensus       175 ~~~~i~D~~G~lrW~~~~~-~~~~~~---~~~~~~~g~l-~~~~g~~-nG~l~~g~G-~~i~elD~~G-kvv~~~~lp~g  246 (571)
T 3elq_A          175 PFTFIVDTEGEYRWWLDQD-TFYDGR---DRDINKRGYL-MGIRETP-RGTFTAVQG-QHWYEFDMMG-QVLEDHKLPRG  246 (571)
T ss_dssp             EEEEEECTTSCEEEECCGG-GTCCSS---SCCGGGCSCC-EEEEECT-TSCEEEEEB-TEEEEECTTC-CEEEEEECCTT
T ss_pred             CceEEEcCCCcEEEEeCcc-cccccc---eeeccCCCeE-EEEEecC-CCCEEEecC-cEEEEECCCC-cEEEEEECCCC
Confidence            3578999999999985210 000000   0000 01111 1111222 677777753 4699999876 7778765442 


Q ss_pred             -CCcceeeeeecCCeEEEEEc--------------CCCEEEEEECCCCcEEEEEec----CCC-----------------
Q 006913          227 -FDKAFTLTPGNNGYLYVTIP--------------VRALVLALDTSSGNILWHKSV----GPL-----------------  270 (626)
Q Consensus       227 -~~~v~sI~~D~dG~LwVGT~--------------~gG~l~alD~~tG~~~w~~~~----~~l-----------------  270 (626)
                       ......+....+|++++...              -...++-+| .+|+++|....    .+.                 
T Consensus       247 ~~~~HHD~~~l~nGn~Lv~v~~~d~~~~dG~~~~~vdD~I~EVD-~tGeVv~eW~~~dhld~~~~~~~~~~d~~~~~~~~  325 (571)
T 3elq_A          247 FADATHESIETPNGTVLLRVGKSNYRRDDGVHVTTIRDHILEVD-KSGRVVDVWDLTKILDPKRDALLGALDAGAVCVNV  325 (571)
T ss_dssp             EECBCSCEEECTTSCEEEEEEETTEECTTSCEECCCSCEEEEEC-TTSCEEEEEEHHHHSCTTCCTTGGGSBTTC-----
T ss_pred             ccccccceEEcCCCcEEEEEecccccCCCCcccceeccEEEEEC-CCCCEEEEEEhHHccCcccccchhccccccccccc
Confidence             11112344456777665321              124688899 89999886411    000                 


Q ss_pred             -------------------------C-C--ceeeEEEee-CCeEEEEEcCCeEEEEcCCCCEEEEee
Q 006913          271 -------------------------G-S--AEYAPVVDS-NGWISVGSLDGLLYSFSPSGVLNKFSK  308 (626)
Q Consensus       271 -------------------------~-~--~~sspvvD~-dG~IWVGT~~gGLy~~d~~g~~~~~~~  308 (626)
                                               . .  .+.++..+. ++.+.+......|++++.+|++.|..-
T Consensus       326 ~~~~~G~~~~~~~~~~~g~~~g~~~~~Dw~HiNsv~~d~~dd~~liSsR~~~I~~Id~tG~V~W~LG  392 (571)
T 3elq_A          326 DLAHAGQQAKLEPDTPFGDALGVGPGRNWAHVNSIAYDAKDDSIILSSRHQGVVKIGRDKQVKWILA  392 (571)
T ss_dssp             --CCCSCBCCCCTTCCSSSSSCSSTTSCSCCEEEEEEETTTTEEEEEETTTEEEEEETTSCEEEEES
T ss_pred             cccccccccccccccccccccccCCCCCCcEecceeEcCCCCEEEEECCccEEEEEcCCCcEEEEEC
Confidence                                     0 0  134555554 567888887778888888888888754

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=88.22  E-value=32  Score=37.19  Aligned_cols=106  Identities=11%  Similarity=0.046  Sum_probs=59.7

Q ss_pred             eEEEcCCCeEEE-EcCC----CeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCC--EEEEEECCCCcEE
Q 006913          190 PVIDQCEGSIYI-SNTQ----GELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRA--LVLALDTSSGNIL  262 (626)
Q Consensus       190 pviD~~dG~LwI-GT~~----GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG--~l~alD~~tG~~~  262 (626)
                      +..++ +|+.++ +..+    ..|+.+|.++++......  ....+..+....||+..+.....+  .++.+|..+|+..
T Consensus       155 ~~~sp-DG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~--~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~  231 (582)
T 3o4h_A          155 FVSDI-RGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDS--GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE  231 (582)
T ss_dssp             EEEEE-ETTEEEEEEEEETTEEEEEEEETTTCCCEEECC--SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred             EEECC-CCCEEEEEEEcCCCCeEEEEEcCCCCCceEeec--CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence            44544 454433 4333    569999988887653322  122345556667886444443455  7889998888876


Q ss_pred             EEEecCCCCCceeeEE--------EeeCCeEEEEE-cCCeEEEEcCCCC
Q 006913          263 WHKSVGPLGSAEYAPV--------VDSNGWISVGS-LDGLLYSFSPSGV  302 (626)
Q Consensus       263 w~~~~~~l~~~~sspv--------vD~dG~IWVGT-~~gGLy~~d~~g~  302 (626)
                       .....  ......+.        .++||.+++.. .++.+..++. |+
T Consensus       232 -~~~~~--~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~-g~  276 (582)
T 3o4h_A          232 -DLELP--SKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID-GE  276 (582)
T ss_dssp             -ECCCS--CSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET-TE
T ss_pred             -EccCC--CcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE-CC
Confidence             32111  11122233        67788776644 5566666665 54

>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*

Probab=88.17  E-value=36  Score=37.81  Aligned_cols=117  Identities=13%  Similarity=0.165  Sum_probs=72.3

Q ss_pred             eCCEEEEEeCCcEEEEcCCCCEEEEEeCCCCC-CcccCeEEecCCeEEEEE----------------CCeEEEEECCCCc
Q 006913           46 EDGKIYACSEKTLFAFESNGTIAWSLDLDFTC-NIGTAPVHGGTGEVYIVA----------------ENRVLKVDLLKIG  108 (626)
Q Consensus        46 ~dG~IwIgSdggL~a~d~~G~~~W~~~~~~~~-~i~~sp~iD~dG~IwVgT----------------~ggL~~id~~~~~  108 (626)
                      .+|.+..+....++.+|..|+++|.+.++... ...+...+..+|++++.+                ++.++-+| .++.
T Consensus       216 ~nG~l~~g~G~~i~elD~~Gkvv~~~~lp~g~~~~HHD~~~l~nGn~Lv~v~~~d~~~~dG~~~~~vdD~I~EVD-~tGe  294 (571)
T 3elq_A          216 PRGTFTAVQGQHWYEFDMMGQVLEDHKLPRGFADATHESIETPNGTVLLRVGKSNYRRDDGVHVTTIRDHILEVD-KSGR  294 (571)
T ss_dssp             TTSCEEEEEBTEEEEECTTCCEEEEEECCTTEECBCSCEEECTTSCEEEEEEETTEECTTSCEECCCSCEEEEEC-TTSC
T ss_pred             CCCCEEEecCcEEEEECCCCcEEEEEECCCCccccccceEEcCCCcEEEEEecccccCCCCcccceeccEEEEEC-CCCC
Confidence            46777777766799999999999988775321 224456666788876622                33677788 5554


Q ss_pred             cccceeEEEe----cCCC-CC---------------C-----------------------CCCCeeEEEEEEc-CCeEEE
Q 006913          109 TSESATQVFY----GTGS-GK---------------G-----------------------GTGAIAGIAVSTS-SSSVYI  144 (626)
Q Consensus       109 ~~~~~~~~~~----~~~~-~~---------------~-----------------------~~~~~I~s~~~d~-dG~LwI  144 (626)
                      ..   ..|..    .... ..               .                       ..=--+.++..+. ++++.+
T Consensus       295 Vv---~eW~~~dhld~~~~~~~~~~d~~~~~~~~~~~~~G~~~~~~~~~~~g~~~g~~~~~Dw~HiNsv~~d~~dd~~li  371 (571)
T 3elq_A          295 VV---DVWDLTKILDPKRDALLGALDAGAVCVNVDLAHAGQQAKLEPDTPFGDALGVGPGRNWAHVNSIAYDAKDDSIIL  371 (571)
T ss_dssp             EE---EEEEHHHHSCTTCCTTGGGSBTTC-------CCCSCBCCCCTTCCSSSSSCSSTTSCSCCEEEEEEETTTTEEEE
T ss_pred             EE---EEEEhHHccCcccccchhccccccccccccccccccccccccccccccccccCCCCCCcEecceeEcCCCCEEEE
Confidence            21   12221    1100 00               0                       0001244554554 668888


Q ss_pred             EEcCCeEEEEeCCCcEEEEECC
Q 006913          145 NVKGRALFAFMTHGQLLWSAGP  166 (626)
Q Consensus       145 gT~~gGL~a~d~~G~~~w~~~~  166 (626)
                      .+....|++++.+|++.|..++
T Consensus       372 SsR~~~I~~Id~tG~V~W~LGg  393 (571)
T 3elq_A          372 SSRHQGVVKIGRDKQVKWILAP  393 (571)
T ss_dssp             EETTTEEEEEETTSCEEEEESC
T ss_pred             ECCccEEEEEcCCCcEEEEECC
Confidence            8877789999988999999754

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=87.32  E-value=29  Score=35.72  Aligned_cols=190  Identities=8%  Similarity=-0.009  Sum_probs=97.2

Q ss_pred             CCeEEEEECCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCC-eEEEEEcCCeEEEEeCC-CcEEEEEC
Q 006913           88 TGEVYIVAENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSS-SVYINVKGRALFAFMTH-GQLLWSAG  165 (626)
Q Consensus        88 dG~IwVgT~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG-~LwIgT~~gGL~a~d~~-G~~~w~~~  165 (626)
                      ++.|-+|.++.|+..|..++..     ...+...    .....|..+.-..+| .|..|+.++.|..+|.. ++.+..+.
T Consensus       116 ~n~lAvgld~tV~lWd~~tg~~-----~~~~~~~----~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~  186 (420)
T 4gga_A          116 GNVLAVALDNSVYLWSASSGDI-----LQLLQME----QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT  186 (420)
T ss_dssp             TSEEEEEETTEEEEEETTTCCE-----EEEEECC----STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             CCEEEEEeCCEEEEEECCCCCE-----EEEEEec----CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEe
Confidence            4445556699999999988742     1111110    112245554444444 56778888889999975 77665431


Q ss_pred             CcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEE
Q 006913          166 PVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTI  245 (626)
Q Consensus       166 ~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT  245 (626)
                      .            +.   .. ..+...+  +..|..|..++.+..+|.................+..+....+|...+..
T Consensus       187 ~------------h~---~~-v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~  248 (420)
T 4gga_A          187 S------------HS---AR-VGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASG  248 (420)
T ss_dssp             C------------CS---SC-EEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             C------------CC---Cc-eEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeee
Confidence            1            00   11 1223334  55677777788888888766433221111112233444445566444333


Q ss_pred             cCCCEEEEEECCCCcEEEE---EecCCCCCceeeEEEee--CCeEEEEE--cCCeEEEEcCC-CCEEE
Q 006913          246 PVRALVLALDTSSGNILWH---KSVGPLGSAEYAPVVDS--NGWISVGS--LDGLLYSFSPS-GVLNK  305 (626)
Q Consensus       246 ~~gG~l~alD~~tG~~~w~---~~~~~l~~~~sspvvD~--dG~IWVGT--~~gGLy~~d~~-g~~~~  305 (626)
                      ..++.+...+..+++....   ..... ...+..+...+  ...+.+++  .++.|..+|.. ++...
T Consensus       249 ~~D~~v~i~~~~~~~~~~~~~~~~~~~-~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~  315 (420)
T 4gga_A          249 GNDNLVNVWPSAPGEGGWVPLQTFTQH-QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS  315 (420)
T ss_dssp             ETTSCEEEEESSCCSSCSCCSEEECCC-SSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEE
T ss_pred             eccccceEEeeccccccceeeeeeccc-CCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccce
Confidence            3445666677666542210   01110 11233344432  23444443  56788888864 55444

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=87.17  E-value=32  Score=36.17  Aligned_cols=249  Identities=13%  Similarity=0.103  Sum_probs=121.0

Q ss_pred             ccCCceeeeeEEe-eCCEEEEEe----CC---cEEEEcC---------CCCEEEEEeCCCCCC-c--ccCeEEecCCeEE
Q 006913           33 RRSAFRLSKPLIG-EDGKIYACS----EK---TLFAFES---------NGTIAWSLDLDFTCN-I--GTAPVHGGTGEVY   92 (626)
Q Consensus        33 ~~~~~~~Sspvid-~dG~IwIgS----dg---gL~a~d~---------~G~~~W~~~~~~~~~-i--~~sp~iD~dG~Iw   92 (626)
                      .+.+.+-....+| .+|+|+++-    .|   .|-.++.         ++.++-.++--..|. +  +..+.+|..|+||
T Consensus        22 ~p~n~~P~gv~vd~~~gRiFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~p~ll~PYP~w~~~~~lvsV~~v~iD~~~rLW  101 (381)
T 3q6k_A           22 NPDNMISTAFAYDAEGEKLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKFSGHKTGKELTSIYQPVIDDCRRLW  101 (381)
T ss_dssp             CGGGCCCCEEEEETTTTEEEEECCTTSTTCSCSEEEEEHHHHTTCTTCSSCCBEECTTCSSSCSSSCEEEEEECTTCEEE
T ss_pred             ccCccceeeeeeecCCCcEEEEeCCCCCCCCcEEEEEeCCCCcccccCCcccccCCCCCccccceEEeeEEEEcCCCcEE
Confidence            3455566667775 789999985    22   4555543         112201222101121 2  3456789999999


Q ss_pred             EEECC-----------------eEEEEECCCC--ccccceeEEEecCCCCCCCCCCeeEEEEEE-c-------CCeEEEE
Q 006913           93 IVAEN-----------------RVLKVDLLKI--GTSESATQVFYGTGSGKGGTGAIAGIAVST-S-------SSSVYIN  145 (626)
Q Consensus        93 VgT~g-----------------gL~~id~~~~--~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d-~-------dG~LwIg  145 (626)
                      |...|                 .|.++|..+.  +.   ...+.++...  ......+..+..| .       ++.+||+
T Consensus       102 VLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~l---i~~y~~p~~~--~~~~S~l~di~VD~~~~~~~c~~~~aYIt  176 (381)
T 3q6k_A          102 VVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPE---VVRYYFPTRL--VEKPTYFGGFAVDVANPKGDCSETFVYIT  176 (381)
T ss_dssp             EEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCE---EEEEECCGGG--CCCGGGEEEEEEEESCTTTTSCSEEEEEE
T ss_pred             EEeCCCcCcCCCccccCCCCCceEEEEECCCCCcee---EEEEECCHHh--cccCCccceEEEecccCCCCCCccEEEEE
Confidence            97421                 3778888876  42   0122332211  1122344555555 2       5678998


Q ss_pred             Ec-CCeEEEEeCCCcEEEEECCcccccccccccccCCCCCcc-----ccceEEEcC----CCeEEEEcCCC-eEEEEeC-
Q 006913          146 VK-GRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYF-----TSVPVIDQC----EGSIYISNTQG-ELYSLSA-  213 (626)
Q Consensus       146 T~-~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i-----~sspviD~~----dG~LwIGT~~G-gL~~ld~-  213 (626)
                      .. ..||..||......|+...  ..+.......-...+..+     ...+++.+.    +..||.....+ .+|++.. 
T Consensus       177 D~~~~gLIVydl~~~~swRv~~--~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~  254 (381)
T 3q6k_A          177 NFLRGALFIYDHKKQDSWNVTH--PTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTK  254 (381)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEC--GGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHH
T ss_pred             cCCCCcEEEEECCCCcEEEEcc--CCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHH
Confidence            64 4899999986445577511  000000000000000000     011222211    23566655433 5666641 


Q ss_pred             --CC----CeEEEEEcCCCCCcceeeeee-cCCeEEEEEcCCCEEEEEECCC-----CcEEEEEecCCCCCceeeEEEee
Q 006913          214 --HS----PYFNWIQDLSSFDKAFTLTPG-NNGYLYVTIPVRALVLALDTSS-----GNILWHKSVGPLGSAEYAPVVDS  281 (626)
Q Consensus       214 --~t----g~~~w~~~~~s~~~v~sI~~D-~dG~LwVGT~~gG~l~alD~~t-----G~~~w~~~~~~l~~~~sspvvD~  281 (626)
                        +.    ..++-.-..+........+.| .+|.||++......+.+.++.+     ++......-..+ .....+.++.
T Consensus       255 ~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l-~~pd~~~i~~  333 (381)
T 3q6k_A          255 ELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRF-VFGTDISVDS  333 (381)
T ss_dssp             HHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTC-CSEEEEEECT
T ss_pred             HhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCc-cccCeEEECC
Confidence              11    111111111111112234665 7899999987777899998654     122211111111 1245566777


Q ss_pred             CCeEEEEE
Q 006913          282 NGWISVGS  289 (626)
Q Consensus       282 dG~IWVGT  289 (626)
                      +|.||+-+
T Consensus       334 ~g~Lwv~s  341 (381)
T 3q6k_A          334 KGGLWFMS  341 (381)
T ss_dssp             TSCEEEEE
T ss_pred             CCeEEEEE
Confidence            88888877

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=86.92  E-value=52  Score=38.31  Aligned_cols=195  Identities=7%  Similarity=-0.029  Sum_probs=113.0

Q ss_pred             ccCeEEecCCeEEE-EE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC
Q 006913           80 GTAPVHGGTGEVYI-VA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH  157 (626)
Q Consensus        80 ~~sp~iD~dG~IwV-gT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~  157 (626)
                      +.++..+.+|.+.+ |+ ++.|..++..+..     ......      ... .|..+....+..|..++.++.|..+|..
T Consensus        20 V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~-----~~~~~~------~~~-~V~~l~fspg~~L~S~s~D~~v~lWd~~   87 (902)
T 2oaj_A           20 PIAAAFDFTQNLLAIATVTGEVHIYGQQQVE-----VVIKLE------DRS-AIKEMRFVKGIYLVVINAKDTVYVLSLY   87 (902)
T ss_dssp             EEEEEEETTTTEEEEEETTSEEEEECSTTCE-----EEEECS------SCC-CEEEEEEETTTEEEEEETTCEEEEEETT
T ss_pred             cEEEEECCCCCEEEEEeCCCEEEEEeCCCcE-----EEEEcC------CCC-CEEEEEEcCCCEEEEEECcCeEEEEECC
Confidence            44566677777544 45 6778888876542     111111      112 3333333344447777888889899975


Q ss_pred             -CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEE--------c-CC-C
Q 006913          158 -GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQ--------D-LS-S  226 (626)
Q Consensus       158 -G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~--------~-~~-s  226 (626)
                       ++.+..+..       .         .. ..++...+.+..|++|+.+|.|..+|.++++..-+.        . .. .
T Consensus        88 ~~~~~~~~~~-------~---------~~-V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h  150 (902)
T 2oaj_A           88 SQKVLTTVFV-------P---------GK-ITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAAR  150 (902)
T ss_dssp             TCSEEEEEEC-------S---------SC-EEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSC
T ss_pred             CCcEEEEEcC-------C---------CC-EEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccC
Confidence             766544300       0         11 123344443566888999999999999988753111        0 01 1


Q ss_pred             CCcceeeeeecC--CeEEEEEcCCCEEEEEECCCCcEEEEEecC----CC------------CCceeeEEEeeCCe-EEE
Q 006913          227 FDKAFTLTPGNN--GYLYVTIPVRALVLALDTSSGNILWHKSVG----PL------------GSAEYAPVVDSNGW-ISV  287 (626)
Q Consensus       227 ~~~v~sI~~D~d--G~LwVGT~~gG~l~alD~~tG~~~w~~~~~----~l------------~~~~sspvvD~dG~-IWV  287 (626)
                      ...+.++....+  +.|.+|. .++.+ ..|..+++....+...    ..            ...+.++...++|. |..
T Consensus       151 ~~~V~sl~~sp~~~~~l~~g~-~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~las  228 (902)
T 2oaj_A          151 LSPIVSIQWNPRDIGTVLISY-EYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIIT  228 (902)
T ss_dssp             CCCCCEEEEETTEEEEEEEEC-SSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEE
T ss_pred             CCCeEEEEEccCCCCEEEEEe-CCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEE
Confidence            223556665543  3566665 45677 8898888776544321    00            01245566776765 666


Q ss_pred             EEcCCeEEEEcCC-CCEEE
Q 006913          288 GSLDGLLYSFSPS-GVLNK  305 (626)
Q Consensus       288 GT~~gGLy~~d~~-g~~~~  305 (626)
                      |+.++.|..+|.. ++...
T Consensus       229 gs~Dg~i~lWd~~~g~~~~  247 (902)
T 2oaj_A          229 IHEDNSLVFWDANSGHMIM  247 (902)
T ss_dssp             EETTCCEEEEETTTCCEEE
T ss_pred             EECCCeEEEEECCCCcEEE
Confidence            7788899999974 66543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=86.78  E-value=56  Score=38.46  Aligned_cols=221  Identities=11%  Similarity=0.078  Sum_probs=112.0

Q ss_pred             eeEEeeCCE-EEEEeCCcEEEEcCCCCEEEEEeCCCC---------CCcccCeEEe-cCCe-EEEEECCeEEEEECCCCc
Q 006913           41 KPLIGEDGK-IYACSEKTLFAFESNGTIAWSLDLDFT---------CNIGTAPVHG-GTGE-VYIVAENRVLKVDLLKIG  108 (626)
Q Consensus        41 spvid~dG~-IwIgSdggL~a~d~~G~~~W~~~~~~~---------~~i~~sp~iD-~dG~-IwVgT~ggL~~id~~~~~  108 (626)
                      .+....+|. |..+.++.|+.++.++..+..+.....         ...+.++... .+|. |.++..+.|+.++..++.
T Consensus       249 ~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~  328 (1045)
T 1k32_A          249 PRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTY  328 (1045)
T ss_dssp             EEEEEESSSCEEEEETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSB
T ss_pred             eeeEcCCCCEEEEEeCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCc
Confidence            445556665 444557778888863322212211100         0123456667 7776 545557888888876642


Q ss_pred             cccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEE-EEeCC-CcEEEEECCcccccccccccccCCCCCcc
Q 006913          109 TSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALF-AFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYF  186 (626)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~-a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i  186 (626)
                            .....     ......+..+....+..|+.++....|+ .++.. ++.. ...      +      .   ... 
T Consensus       329 ------~~~~~-----~~~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~~-~l~------~------~---~~~-  380 (1045)
T 1k32_A          329 ------VLKVP-----EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFE------E------N---LGN-  380 (1045)
T ss_dssp             ------EEECS-----CCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECC------C------C---CCS-
T ss_pred             ------eEEcc-----CCCcceEEeeeEcCCCeEEEEECCCceEEEEECCCCCce-Eec------C------C---ccc-
Confidence                  11111     0111022222222223455556566777 77865 4332 210      0      0   011 


Q ss_pred             ccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCe-EEEEEcCC---------CEEEEEEC
Q 006913          187 TSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGY-LYVTIPVR---------ALVLALDT  256 (626)
Q Consensus       187 ~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~-LwVGT~~g---------G~l~alD~  256 (626)
                      ...+...+.+..|..+..++.|+.+|.++++........ ...+..+....||+ |..+...+         ..++.+|.
T Consensus       381 ~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~-~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~  459 (1045)
T 1k32_A          381 VFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR-EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDM  459 (1045)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS-SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEET
T ss_pred             eeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCC-CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEEC
Confidence            133455542445777777888999999998876543211 12234455566775 43333222         37888898


Q ss_pred             CCCcEEEEEecCCCCCceeeEEEeeCCe-EEEEEcCCe
Q 006913          257 SSGNILWHKSVGPLGSAEYAPVVDSNGW-ISVGSLDGL  293 (626)
Q Consensus       257 ~tG~~~w~~~~~~l~~~~sspvvD~dG~-IWVGT~~gG  293 (626)
                      .+++.. .. ... ......+...++|. |++++..++
T Consensus       460 ~~g~~~-~l-~~~-~~~~~~~~~spdG~~l~~~s~~~~  494 (1045)
T 1k32_A          460 EGRKIF-AA-TTE-NSHDYAPAFDADSKNLYYLSYRSL  494 (1045)
T ss_dssp             TTTEEE-EC-SCS-SSBEEEEEECTTSCEEEEEESCCC
T ss_pred             CCCcEE-Ee-eCC-CcccCCceEcCCCCEEEEEecccC
Confidence            877632 21 111 12234566776774 777775444

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=86.19  E-value=46  Score=36.93  Aligned_cols=66  Identities=12%  Similarity=0.148  Sum_probs=40.7

Q ss_pred             eeeeEEeeCCE-EEEEeCCcEEEEcC-CC---CEEEEEeCCCCCCcccCeEEecCCe-EEEEECCeEEEEECCCC
Q 006913           39 LSKPLIGEDGK-IYACSEKTLFAFES-NG---TIAWSLDLDFTCNIGTAPVHGGTGE-VYIVAENRVLKVDLLKI  107 (626)
Q Consensus        39 ~Sspvid~dG~-IwIgSdggL~a~d~-~G---~~~W~~~~~~~~~i~~sp~iD~dG~-IwVgT~ggL~~id~~~~  107 (626)
                      ...+....||+ |..++.+.|+.+|. ++   ...   .+.........+....+|+ |..+.++.|+.+|..++
T Consensus       111 v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g  182 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASG  182 (741)
T ss_dssp             SCCCEECTTSSEEEEEETTEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTT
T ss_pred             cceeEECCCCCEEEEEeCCcEEEEECCCCCcceEE---EcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCC
Confidence            45667767776 45556778888887 55   332   1111112234566677887 44455788999998775

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=85.57  E-value=34  Score=34.86  Aligned_cols=232  Identities=13%  Similarity=0.098  Sum_probs=120.3

Q ss_pred             eeEEeeCC-EEEEEe-----------CCcEEEEcC-CCCEEEEEeCCCC----CCcccCeEEecCCe-EEEEE---CCeE
Q 006913           41 KPLIGEDG-KIYACS-----------EKTLFAFES-NGTIAWSLDLDFT----CNIGTAPVHGGTGE-VYIVA---ENRV   99 (626)
Q Consensus        41 spvid~dG-~IwIgS-----------dggL~a~d~-~G~~~W~~~~~~~----~~i~~sp~iD~dG~-IwVgT---~ggL   99 (626)
                      ..++..+| .+|++.           ++.+..+|. +++....+.....    ......+.++.+|+ +|++.   .+.|
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v  133 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI  133 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence            55665666 688875           235889997 7776655543210    01234567777875 77765   3579


Q ss_pred             EEEECCCCccccceeEEE-ecCCCCCCCCCCeeEEEEEEcC-CeEEE-EEcCCeEEEEeC--CCcEEEEECCcccccccc
Q 006913          100 LKVDLLKIGTSESATQVF-YGTGSGKGGTGAIAGIAVSTSS-SSVYI-NVKGRALFAFMT--HGQLLWSAGPVLDQLGYR  174 (626)
Q Consensus       100 ~~id~~~~~~~~~~~~~~-~~~~~~~~~~~~~I~s~~~d~d-G~LwI-gT~~gGL~a~d~--~G~~~w~~~~~~~~~~~~  174 (626)
                      ..+|..+++.     .-. ...       ..... .....+ ...++ .+.++.+..++.  +|+..+.... ...+.  
T Consensus       134 ~v~d~~~~~~-----~~~~i~~-------~~~~~-v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~-~~~~~--  197 (361)
T 2oiz_A          134 GIVDVAKGDY-----VEDVTAA-------AGCWS-VIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRS-KQMFS--  197 (361)
T ss_dssp             EEEETTTTEE-----EEEEGGG-------TTEEE-EEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEEC-CCCSC--
T ss_pred             EEEECCCCcE-----EEEEecC-------CCcce-eEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccc-cceEc--
Confidence            9999887631     111 110       00100 111111 12222 234444544442  3555432100 00000  


Q ss_pred             cccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEc--CCC-----C----CcceeeeeecC-CeEE
Q 006913          175 QGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQD--LSS-----F----DKAFTLTPGNN-GYLY  242 (626)
Q Consensus       175 ~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~--~~s-----~----~~v~sI~~D~d-G~Lw  242 (626)
                      .      ....+...+..+  +..+|+.+.++.++.+|..++.......  ...     .    .....++.+.+ +++|
T Consensus       198 ~------~~~~~~~~~~~~--g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~ly  269 (361)
T 2oiz_A          198 V------KDDPIFIAPALD--KDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMY  269 (361)
T ss_dssp             T------TTSCBCSCCEEC--SSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEE
T ss_pred             C------CCCceEEEeccc--CCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEE
Confidence            0      000111112223  4567777778889999987654332211  000     0    00111344555 6899


Q ss_pred             EEEc-C---------CCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCC-eEEEEEcCCeEEEEcCC-C
Q 006913          243 VTIP-V---------RALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNG-WISVGSLDGLLYSFSPS-G  301 (626)
Q Consensus       243 VGT~-~---------gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG-~IWVGT~~gGLy~~d~~-g  301 (626)
                      ++.. +         ...+..+|..+++.+-....+.    ...+.++++| .||++.. +.|..+|.. +
T Consensus       270 v~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          270 VFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD----ALSMTIDQQRNLMLTLDG-GNVNVYDISQP  335 (361)
T ss_dssp             EEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT----CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred             EEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC----eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence            9753 1         2478889999998876655542    4456777676 5776665 899999975 6

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=83.03  E-value=47  Score=36.93  Aligned_cols=63  Identities=13%  Similarity=0.175  Sum_probs=37.1

Q ss_pred             EEeeCCEEEEEe---CCcEEEEcC-CCCEEEEEeCCCCCCc-ccCeEEecCCeEEEEEC--------CeEEEEECCCC
Q 006913           43 LIGEDGKIYACS---EKTLFAFES-NGTIAWSLDLDFTCNI-GTAPVHGGTGEVYIVAE--------NRVLKVDLLKI  107 (626)
Q Consensus        43 vid~dG~IwIgS---dggL~a~d~-~G~~~W~~~~~~~~~i-~~sp~iD~dG~IwVgT~--------ggL~~id~~~~  107 (626)
                      ++..+|.||+..   ...+.+||. ++  .|.....-.... ..+.+.-.+|.||+...        +.+.++|+.++
T Consensus       249 ~~~~~g~lyv~GG~~~~~v~~yd~~t~--~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~  324 (656)
T 1k3i_A          249 SMDGNGQIVVTGGNDAKKTSLYDSSSD--SWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  324 (656)
T ss_dssp             EECTTSCEEEECSSSTTCEEEEEGGGT--EEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             cCCCCCCEEEeCCCCCCceEEecCcCC--ceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence            333578898853   246999998 44  575432211111 22333434788988532        35888999875

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=81.95  E-value=26  Score=37.84  Aligned_cols=102  Identities=13%  Similarity=0.116  Sum_probs=60.4

Q ss_pred             CCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCC----CEEEEEECCCCcEEEEEecCCCC
Q 006913          196 EGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVR----ALVLALDTSSGNILWHKSVGPLG  271 (626)
Q Consensus       196 dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~g----G~l~alD~~tG~~~w~~~~~~l~  271 (626)
                      ++.+++....+++..+|.++++.........    .++..+.||+.++.....    ..++.+|..+|+.......   .
T Consensus       122 ~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~----~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~---~  194 (582)
T 3o4h_A          122 EAVVFTGATEDRVALYALDGGGLRELARLPG----FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSG---E  194 (582)
T ss_dssp             SCEEEEEECSSCEEEEEEETTEEEEEEEESS----CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCS---S
T ss_pred             CeEEEEecCCCCceEEEccCCcEEEeecCCC----ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecC---C
Confidence            4456666666667788888877654332111    345556678655532222    4688899888876532211   1


Q ss_pred             CceeeEEEeeCCe-EEEEEcCC--eEEEEcCC-CCEE
Q 006913          272 SAEYAPVVDSNGW-ISVGSLDG--LLYSFSPS-GVLN  304 (626)
Q Consensus       272 ~~~sspvvD~dG~-IWVGT~~g--GLy~~d~~-g~~~  304 (626)
                      .....+...+||. |+.+..++  .|+.+|.+ ++..
T Consensus       195 ~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~  231 (582)
T 3o4h_A          195 GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE  231 (582)
T ss_dssp             CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred             CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence            2346688888886 44334445  69999976 4444

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=81.89  E-value=34  Score=32.01  Aligned_cols=150  Identities=11%  Similarity=0.001  Sum_probs=73.9

Q ss_pred             eEEEEEEcCCeEEEEEcCCeEEEEeCC--CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcC----
Q 006913          131 AGIAVSTSSSSVYINVKGRALFAFMTH--GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT----  204 (626)
Q Consensus       131 I~s~~~d~dG~LwIgT~~gGL~a~d~~--G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~----  204 (626)
                      +..+....+|+.++...++.|+.+|..  ++..... .     .      ..  .. ....+...+.+..|+++..    
T Consensus        44 v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~-~-----~------~~--~~-~~~~~~~spdg~~l~~~~~~~~~  108 (297)
T 2ojh_A           44 FEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVD-T-----G------FA--TI-CNNDHGISPDGALYAISDKVEFG  108 (297)
T ss_dssp             CEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECC-C-----T------TC--CC-BCSCCEECTTSSEEEEEECTTTS
T ss_pred             eEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEec-c-----c------cc--cc-cccceEECCCCCEEEEEEeCCCC
Confidence            344444556664444456789999964  4432211 0     0      00  00 1133455441334555542    


Q ss_pred             CCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCe-EEEEEcCCC--EEEEEECCCCcEEEEEecCCCCCceeeEEEee
Q 006913          205 QGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGY-LYVTIPVRA--LVLALDTSSGNILWHKSVGPLGSAEYAPVVDS  281 (626)
Q Consensus       205 ~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~-LwVGT~~gG--~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~  281 (626)
                      ...|+.++..++.......   ...+..+....||+ |++.....+  .++.++..++........   ......+...+
T Consensus       109 ~~~l~~~~~~~~~~~~~~~---~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~s~  182 (297)
T 2ojh_A          109 KSAIYLLPSTGGTPRLMTK---NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHG---EGRNDGPDYSP  182 (297)
T ss_dssp             SCEEEEEETTCCCCEECCS---SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCS---SSCEEEEEECT
T ss_pred             cceEEEEECCCCceEEeec---CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccC---CCccccceECC
Confidence            4578888887765432211   11234445555664 443332233  566677666655322111   12345567777


Q ss_pred             CCe-EEEEEc-C--CeEEEEcCCC
Q 006913          282 NGW-ISVGSL-D--GLLYSFSPSG  301 (626)
Q Consensus       282 dG~-IWVGT~-~--gGLy~~d~~g  301 (626)
                      +|. |++++. +  ..||.++..+
T Consensus       183 dg~~l~~~~~~~~~~~i~~~~~~~  206 (297)
T 2ojh_A          183 DGRWIYFNSSRTGQMQIWRVRVDG  206 (297)
T ss_dssp             TSSEEEEEECTTSSCEEEEEETTS
T ss_pred             CCCEEEEEecCCCCccEEEECCCC
Confidence            775 565553 3  3577776543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=81.48  E-value=52  Score=33.90  Aligned_cols=250  Identities=10%  Similarity=-0.019  Sum_probs=121.5

Q ss_pred             CEEEEEeC---C---cEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCe-EEEEE-----------CCeEEEEECCCCc
Q 006913           48 GKIYACSE---K---TLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGE-VYIVA-----------ENRVLKVDLLKIG  108 (626)
Q Consensus        48 G~IwIgSd---g---gL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~-IwVgT-----------~ggL~~id~~~~~  108 (626)
                      ..+|++..   +   .++.||. +++..-.++.+.    ...+.+..+|+ +|++.           ++.|..+|..+.+
T Consensus        33 ~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~----~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~  108 (373)
T 2mad_H           33 RRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF----LPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL  108 (373)
T ss_pred             CEEEEeCCcccCCccEEEEEECCCCeEEEEecCCC----CCCeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCc
Confidence            46888652   1   5799998 777664444332    12566777775 78874           2458899987653


Q ss_pred             cccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEc--CCeEEEEeCC-CcEEEE-ECCcccccccccccccCCCCC
Q 006913          109 TSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVK--GRALFAFMTH-GQLLWS-AGPVLDQLGYRQGCTKTDVDC  184 (626)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~--~gGL~a~d~~-G~~~w~-~~~~~~~~~~~~~~~~~l~~~  184 (626)
                      .   ...+..+...............+...+..||++..  .+.|..+| . ++..-. .       +  .      ..|
T Consensus       109 ~---~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i-------~--~------~~~  169 (373)
T 2mad_H          109 P---IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLL-------S--S------PTC  169 (373)
T ss_pred             E---EEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEc-------C--C------Cce
Confidence            1   01111110000000001112223334556898864  36699999 7 666443 2       1  0      011


Q ss_pred             ccccceEEEcCCCeEEEE-cCCCeEEEEeCCCCeEEEEEcC-----CCCCcceeee-eecCCeEEEEEcCCCEEEEEECC
Q 006913          185 YFTSVPVIDQCEGSIYIS-NTQGELYSLSAHSPYFNWIQDL-----SSFDKAFTLT-PGNNGYLYVTIPVRALVLALDTS  257 (626)
Q Consensus       185 ~i~sspviD~~dG~LwIG-T~~GgL~~ld~~tg~~~w~~~~-----~s~~~v~sI~-~D~dG~LwVGT~~gG~l~alD~~  257 (626)
                       +   .+.. .+++.|+. +.+|.+..++. +++..+....     ........+. ...++.+|+.+. .+.++.+|..
T Consensus       170 -~---~~~~-~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~v~vid~~  242 (373)
T 2mad_H          170 -Y---HIHP-GAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY-SGKILQADIS  242 (373)
T ss_pred             -E---EEEe-CCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC-CceEEEEecc
Confidence             1   1112 13344443 34677888888 7666643221     1000001111 112456666553 5688888876


Q ss_pred             CCcEEE--EEecCC-------C-CCceeeEEEeeC-CeEEEEEc----------CCeEEEEcCC-CCEEEEeeccCCCCc
Q 006913          258 SGNILW--HKSVGP-------L-GSAEYAPVVDSN-GWISVGSL----------DGLLYSFSPS-GVLNKFSKSDTSDSV  315 (626)
Q Consensus       258 tG~~~w--~~~~~~-------l-~~~~sspvvD~d-G~IWVGT~----------~gGLy~~d~~-g~~~~~~~~~~~~~~  315 (626)
                      ++....  ......       . ..-...+.++++ +++|+...          .+.|+.+|.. ++.......  ..  
T Consensus       243 ~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~--g~--  318 (373)
T 2mad_H          243 AAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL--GH--  318 (373)
T ss_pred             CCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC--CC--
Confidence            553221  111100       0 000111334444 67999764          2469999975 555443331  11  


Q ss_pred             cccCceEEEEEEecCCc-EEEE
Q 006913          316 IQSSPYWFHLLGPSIGL-KAIL  336 (626)
Q Consensus       316 ilssp~V~~Il~DsdG~-IwI~  336 (626)
                           ....+..+.+|. +++.
T Consensus       319 -----~p~~i~~s~Dg~~~l~v  335 (373)
T 2mad_H          319 -----DVDAISVAQDGGPDLYA  335 (373)
T ss_pred             -----CcCeEEECCCCCeEEEE
Confidence                 123566677887 5533

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=81.41  E-value=82  Score=36.13  Aligned_cols=244  Identities=13%  Similarity=0.150  Sum_probs=120.9

Q ss_pred             ceeeeeEEee--CCEEEEEe-CCcEEEEcCCCCEEEEEeCCCC------CCcccCeEEec--CCeEEEEE-C------Ce
Q 006913           37 FRLSKPLIGE--DGKIYACS-EKTLFAFESNGTIAWSLDLDFT------CNIGTAPVHGG--TGEVYIVA-E------NR   98 (626)
Q Consensus        37 ~~~Sspvid~--dG~IwIgS-dggL~a~d~~G~~~W~~~~~~~------~~i~~sp~iD~--dG~IwVgT-~------gg   98 (626)
                      ......+++.  .+.+|+++ .++|++-+..|+ .|.......      ...+.++.+|.  .+.+|+++ +      ++
T Consensus        15 g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~-tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~   93 (789)
T 1sqj_A           15 GYITGIVAHPKTKDLLYARTDIGGAYRWDAGTS-KWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAA   93 (789)
T ss_dssp             SCEEEEEECSSSTTCEEEEESSSCEEEEETTTT-EEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred             CcEEEEEECCCCCCEEEEEecCCCEEEecCCCC-CeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccE
Confidence            3445555544  47899998 578888775555 676533211      01244566664  35799987 2      45


Q ss_pred             EEEEECCCCccccceeEEEecCCCCCC---CCCC-eeEEEEEE--cCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccc
Q 006913           99 VLKVDLLKIGTSESATQVFYGTGSGKG---GTGA-IAGIAVST--SSSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLG  172 (626)
Q Consensus        99 L~~id~~~~~~~~~~~~~~~~~~~~~~---~~~~-~I~s~~~d--~dG~LwIgT~~gGL~a~d~~G~~~w~~~~~~~~~~  172 (626)
                      |++- .+.+.      .|.....+...   ..+. .+..+..+  ..+.+|+++..++|++-+-.|+ .|....   ..+
T Consensus        94 v~~S-~DgG~------TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~S~DgG~-TW~~~~---~~~  162 (789)
T 1sqj_A           94 FYVS-EDRGQ------SFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWKSSDRAK-TWTNVT---SIP  162 (789)
T ss_dssp             EEEE-SSTTS------EEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEEESSTTS-SCEEET---TSC
T ss_pred             EEEE-CCCCC------cceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEEECCCCc-ccCCCc---cCc
Confidence            5554 44442      33221111000   0111 11222223  3468999986677765433354 476311   000


Q ss_pred             cccccccCCCCCccccceEEEcC-CCeEEEEcCC-CeEEEEeCCCCeEEEEEcCCC-CCc-----------------cee
Q 006913          173 YRQGCTKTDVDCYFTSVPVIDQC-EGSIYISNTQ-GELYSLSAHSPYFNWIQDLSS-FDK-----------------AFT  232 (626)
Q Consensus       173 ~~~~~~~~l~~~~i~sspviD~~-dG~LwIGT~~-GgL~~ld~~tg~~~w~~~~~s-~~~-----------------v~s  232 (626)
                       ...    .....+ ..+.+++. .+.||++... ++|++ ..++|+ .|...... ...                 ...
T Consensus       163 -~~~----~~~~~~-~~i~~~p~~~~~~~~~~~~~~~v~~-S~DgG~-TW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (789)
T 1sqj_A          163 -DAF----TNGIGY-TSVIFDPERNGTIYASATAPQGMYV-THDGGV-SWEPVAGQPSSWLNRTTGAFPDKKPASIAPQP  234 (789)
T ss_dssp             -CCC----STTTCE-EEEEECTTSTTCEEEEESSTTCEEE-ESSTTS-SCEECTTCCCSCCHHHHHTSTTCCCSSSSCEE
T ss_pred             -ccc----CCCCCe-EEEEECCCCCCEEEEEEcCCCeEEE-EcCCCc-CcccCCCCcCccccccccccCcccccccccce
Confidence             000    001111 23445431 4689999875 66664 566654 47643211 000                 023


Q ss_pred             eeeec-CCeEEEEEc--------CCCEEEEEECCCCcEEEEEecCCCC----------Cc----eeeEEEee--CCeEEE
Q 006913          233 LTPGN-NGYLYVTIP--------VRALVLALDTSSGNILWHKSVGPLG----------SA----EYAPVVDS--NGWISV  287 (626)
Q Consensus       233 I~~D~-dG~LwVGT~--------~gG~l~alD~~tG~~~w~~~~~~l~----------~~----~sspvvD~--dG~IWV  287 (626)
                      +..+. +++||++..        ..+.++.-+  ++-..|+.......          .+    +..+.+++  .+.||+
T Consensus       235 ~~~~p~~~~l~~~~~~~~~p~~g~~g~l~~S~--DgG~tW~~~~~~~~~~~p~~~~~~~~~~~g~~~lav~p~~~~~v~~  312 (789)
T 1sqj_A          235 MKVALTPNFLYVTYADYPGPWGVTFGEVWRQN--RTSGAWDDITPRVGNSSPAPYNNQTFPAGGFCGLSVDATNPNRLVV  312 (789)
T ss_dssp             EEEEECSSEEEEEEESSCSSSCCCCCCEEEEE--TTTCCEEECCCCTTTEESCCCSSCCSCCCEEEEEEEETTEEEEEEE
T ss_pred             eEEcCCCCeEEEEEecCCCCCCCCCceEEEEe--CCCCceEECcCCCCccccccccccccccCceEEEEECCCCCCEEEE
Confidence            34443 788998741        234566554  34445664222101          11    23455553  357999


Q ss_pred             EEcC-------CeEEEEcCCCC
Q 006913          288 GSLD-------GLLYSFSPSGV  302 (626)
Q Consensus       288 GT~~-------gGLy~~d~~g~  302 (626)
                      ++.+       ++||+-...|+
T Consensus       313 ~~~~~~~~~~~~~l~~S~DgG~  334 (789)
T 1sqj_A          313 ITLDRDPGPALDSIYLSTDAGA  334 (789)
T ss_dssp             EEECCCSCSSCCCEEEESSTTS
T ss_pred             EEeccCCCcccccEEEecCCCC
Confidence            9865       67877755454

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=80.63  E-value=58  Score=33.91  Aligned_cols=74  Identities=16%  Similarity=0.160  Sum_probs=44.0

Q ss_pred             eEEEcCCCeEEEEcCCCeEEEEeCC-----CCeEEEEEcCCCC-Ccce--eeeeecC--CeEEEEEcCCCEEEEEECC-C
Q 006913          190 PVIDQCEGSIYISNTQGELYSLSAH-----SPYFNWIQDLSSF-DKAF--TLTPGNN--GYLYVTIPVRALVLALDTS-S  258 (626)
Q Consensus       190 pviD~~dG~LwIGT~~GgL~~ld~~-----tg~~~w~~~~~s~-~~v~--sI~~D~d--G~LwVGT~~gG~l~alD~~-t  258 (626)
                      +++|...+.||++-.+.||.+|+.+     ++++......+.. ..+.  +++...+  |.|++...+...+..+|.. +
T Consensus       185 cvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~  264 (355)
T 3amr_A          185 MAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGK  264 (355)
T ss_dssp             EEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             EEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCC
Confidence            5667557999999998899999955     3445443322221 1222  3433444  4577766555677778864 4


Q ss_pred             CcEEE
Q 006913          259 GNILW  263 (626)
Q Consensus       259 G~~~w  263 (626)
                      .+.+-
T Consensus       265 ~~~vg  269 (355)
T 3amr_A          265 NKYVA  269 (355)
T ss_dssp             CCEEE
T ss_pred             CcEEE
Confidence            44443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	626
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	99.46
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	99.44
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	99.42
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	99.31
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	99.27
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.16
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.06
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.06
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.04
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.03
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.02
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.97
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.95
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.94
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.91
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.91
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	98.84
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.84
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.84
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.65
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	98.6
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.44
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	97.85
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	97.84
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	97.58
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	97.42
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	97.41
d1tbga_	340	beta1-subunit of the signal-transducing G protein	97.3
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	97.11
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	97.05
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	97.01
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	97.0
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	96.64
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	96.59
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	96.53
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.52
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	96.48
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	96.27
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	96.24
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.08
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	95.17
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	94.89
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	94.76
d1tbga_	340	beta1-subunit of the signal-transducing G protein	94.54
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	94.08
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	93.8
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	93.77
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	92.66
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	92.2
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	91.74
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	91.13
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	90.94
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	89.64
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	86.54
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	86.47
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	86.41
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	85.87
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	85.16
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	84.91
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	81.92

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.46  E-value=3e-11  Score=133.74  Aligned_cols=119  Identities=20%  Similarity=0.283  Sum_probs=82.4

Q ss_pred             ceeeeeEEeeCCEEEEEe--CCcEEEEcC--CCCEEEEEeCCCC--------C-CcccCeEEecCCeEEEEE-CCeEEEE
Q 006913           37 FRLSKPLIGEDGKIYACS--EKTLFAFES--NGTIAWSLDLDFT--------C-NIGTAPVHGGTGEVYIVA-ENRVLKV  102 (626)
Q Consensus        37 ~~~Sspvid~dG~IwIgS--dggL~a~d~--~G~~~W~~~~~~~--------~-~i~~sp~iD~dG~IwVgT-~ggL~~i  102 (626)
                      .+.++|++ .+|.||+++  ++.|+++|.  +|+.+|++.....        + .....+.. .+++||+++ ++.|+++
T Consensus        53 ~~~~tP~v-~~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~-~~~~i~~~~~~g~l~al  130 (571)
T d2ad6a1          53 GHEGAPLV-IGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY-GAGQIVKKQANGHLLAL  130 (571)
T ss_dssp             CCCSCCEE-ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE-ETTEEEEECTTSEEEEE
T ss_pred             CcccCCEE-ECCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCccee-eCCeEEEEeCCCcEEee
Confidence            46688999 799999997  468999995  5999999864321        0 01123344 468999998 7899999


Q ss_pred             ECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEc------CCeEEEEeC-CCcEEEEE
Q 006913          103 DLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVK------GRALFAFMT-HGQLLWSA  164 (626)
Q Consensus       103 d~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~------~gGL~a~d~-~G~~~w~~  164 (626)
                      |.++++.     .|........  .+..+...+...++.|++++.      .+.|.++|. +|+++|.+
T Consensus       131 da~tG~~-----~w~~~~~~~~--~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~  192 (571)
T d2ad6a1         131 DAKTGKI-----NWEVEVCDPK--VGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             ETTTCCE-----EEEEECCCGG--GTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             ehhhhhh-----hccccccccc--cccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEE
Confidence            9999863     5544321111  112333344556789999874      467999997 59999975

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=99.44  E-value=8.6e-11  Score=129.67  Aligned_cols=178  Identities=16%  Similarity=0.199  Sum_probs=109.4

Q ss_pred             ceeeeeEEeeCCEEEEEe-CCcEEEEcC-CCCEEEEEeCCCC--------CC-cccCeEEecCCeEEEEE-CCeEEEEEC
Q 006913           37 FRLSKPLIGEDGKIYACS-EKTLFAFES-NGTIAWSLDLDFT--------CN-IGTAPVHGGTGEVYIVA-ENRVLKVDL  104 (626)
Q Consensus        37 ~~~Sspvid~dG~IwIgS-dggL~a~d~-~G~~~W~~~~~~~--------~~-i~~sp~iD~dG~IwVgT-~ggL~~id~  104 (626)
                      .+.++|++ .+|.||+++ ++.|+++|. +|+.+|++.....        +. ....+.. .++.||+++ ++.|+++|.
T Consensus        57 ~~~stPiv-~~g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~g~l~Alda  134 (560)
T d1kv9a2          57 GLEATPLF-HDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL-WGDKVYVGTLDGRLIALDA  134 (560)
T ss_dssp             CCCCCCEE-ETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE-EBTEEEEECTTSEEEEEET
T ss_pred             CcEeCCEE-ECCEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce-eCCeEEEEeCCCEEEEEEC
Confidence            35699999 889999998 677999998 9999999754211        11 1223333 357899998 789999999


Q ss_pred             CCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcC------CeEEEEeC-CCcEEEEECCccccccc--c-
Q 006913          105 LKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKG------RALFAFMT-HGQLLWSAGPVLDQLGY--R-  174 (626)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~------gGL~a~d~-~G~~~w~~~~~~~~~~~--~-  174 (626)
                      .+++.     .|.........  ...+...+...++.+++++..      +.|.++|. +|+++|.+.........  . 
T Consensus       135 ~tG~~-----~w~~~~~~~~~--~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~  207 (560)
T d1kv9a2         135 KTGKA-----IWSQQTTDPAK--PYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEH  207 (560)
T ss_dssp             TTCCE-----EEEEECSCTTS--SCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSS
T ss_pred             CCCcE-----EeccCccCccc--ceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCccc
Confidence            99863     55443221111  112233344567888887542      56999997 59999986321110000  0 


Q ss_pred             ------------cccccCCCCCccccceEEEcCCCeEEEEcCC-------------------CeEEEEeCCCCeEEEEEc
Q 006913          175 ------------QGCTKTDVDCYFTSVPVIDQCEGSIYISNTQ-------------------GELYSLSAHSPYFNWIQD  223 (626)
Q Consensus       175 ------------~~~~~~l~~~~i~sspviD~~dG~LwIGT~~-------------------GgL~~ld~~tg~~~w~~~  223 (626)
                                  ........+..+...+.+|...+.+|+++.+                   ..|.++|.++|+++|...
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q  287 (560)
T d1kv9a2         208 PELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQ  287 (560)
T ss_dssp             HHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE
T ss_pred             cccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEe
Confidence                        0000000122334556777656777876632                   357888888888888653

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=99.42  E-value=1.9e-10  Score=127.11  Aligned_cols=121  Identities=20%  Similarity=0.304  Sum_probs=83.2

Q ss_pred             CceeeeeEEeeCCEEEEEe-CCcEEEEcC-CCCEEEEEeCCCC--------CC-cccCeEEecCCeEEEEE-CCeEEEEE
Q 006913           36 AFRLSKPLIGEDGKIYACS-EKTLFAFES-NGTIAWSLDLDFT--------CN-IGTAPVHGGTGEVYIVA-ENRVLKVD  103 (626)
Q Consensus        36 ~~~~Sspvid~dG~IwIgS-dggL~a~d~-~G~~~W~~~~~~~--------~~-i~~sp~iD~dG~IwVgT-~ggL~~id  103 (626)
                      ..+.++|++ .+|.||+++ ++.|+++|. +|+.+|++.....        +. ....+.. .++.+|+++ ++.|+++|
T Consensus        67 ~~~~stPiv-~~g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~v~~~t~~g~l~ald  144 (573)
T d1kb0a2          67 RGVEATPVV-VDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL-WKGKVYVGAWDGRLIALD  144 (573)
T ss_dssp             SCCCCCCEE-ETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE-ETTEEEEECTTSEEEEEE
T ss_pred             CCcEECCEE-ECCEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceE-ECCcEEEEecccceeeec
Confidence            456799999 789999998 677999998 9999999865321        01 1223444 467999998 88999999


Q ss_pred             CCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEc------CCeEEEEeC-CCcEEEEE
Q 006913          104 LLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVK------GRALFAFMT-HGQLLWSA  164 (626)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~------~gGL~a~d~-~G~~~w~~  164 (626)
                      ..+++.     .|........... ..+...+...++.+++++.      .+.|.++|. +|+++|.+
T Consensus       145 a~tG~~-----~W~~~~~~~~~~~-~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~  206 (573)
T d1kb0a2         145 AATGKE-----VWHQNTFEGQKGS-LTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW  206 (573)
T ss_dssp             TTTCCE-----EEEEETTTTCCSS-CBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             cccccc-----eecccCccCCcce-EEeecceEEEeccEEEeeccccccccceEEEEecCCccceeee
Confidence            999863     5544322111111 1122334456888998754      256999997 59999986

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.31  E-value=2.7e-09  Score=117.88  Aligned_cols=178  Identities=16%  Similarity=0.243  Sum_probs=104.6

Q ss_pred             eeeeeEEeeCCEEEEEe-CCcEEEEcC-CCCEEEEEeCCCC------CC-cccCeEEecCCeEEEEE-CCeEEEEECCCC
Q 006913           38 RLSKPLIGEDGKIYACS-EKTLFAFES-NGTIAWSLDLDFT------CN-IGTAPVHGGTGEVYIVA-ENRVLKVDLLKI  107 (626)
Q Consensus        38 ~~Sspvid~dG~IwIgS-dggL~a~d~-~G~~~W~~~~~~~------~~-i~~sp~iD~dG~IwVgT-~ggL~~id~~~~  107 (626)
                      ..++|++ .+|.||+++ ++.|+++|. +|+.+|++.....      +. ....+.. .++.|++++ ++.|+++|..++
T Consensus        60 ~~stPiv-~~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~-~~~~i~~~t~~~~l~alda~tG  137 (582)
T d1flga_          60 QESQAIV-SDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI-YGDKVFFGTLDASVVALNKNTG  137 (582)
T ss_dssp             CCCCCEE-ETTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE-ETTEEEEEETTTEEEEEESSSC
T ss_pred             cccCCEE-ECCEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceE-eCCceEEecCCCeEEEeccccc
Confidence            4588998 889999998 678999999 9999999865311      11 1223444 357899999 789999999998


Q ss_pred             ccccceeEEEecCCCCCCCCCCeeEEEEEEc----CCeEEEEE-------cCCeEEEEeCC-CcEEEEECCcccccc---
Q 006913          108 GTSESATQVFYGTGSGKGGTGAIAGIAVSTS----SSSVYINV-------KGRALFAFMTH-GQLLWSAGPVLDQLG---  172 (626)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~----dG~LwIgT-------~~gGL~a~d~~-G~~~w~~~~~~~~~~---  172 (626)
                      +.     .|.......... ......+....    .+.+.+..       ..+.|+++|.. |+++|.+.......+   
T Consensus       138 ~~-----~W~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~  211 (582)
T d1flga_         138 KV-----VWKKKFADHGAG-YTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLN  211 (582)
T ss_dssp             CE-----EEEEECSCGGGT-CBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEET
T ss_pred             ce-----eeeecccCCCcc-ceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCcccccc
Confidence            63     454322111000 00001111111    22333331       23569999985 999998632111000   


Q ss_pred             ---------c-------cc----cccc--CCCCCccccceEEEcCCCeEEEEcC------------------------CC
Q 006913          173 ---------Y-------RQ----GCTK--TDVDCYFTSVPVIDQCEGSIYISNT------------------------QG  206 (626)
Q Consensus       173 ---------~-------~~----~~~~--~l~~~~i~sspviD~~dG~LwIGT~------------------------~G  206 (626)
                               .       ..    ....  ...+..+...+.+|...+.+|+++.                        ..
T Consensus       212 ~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~  291 (582)
T d1flga_         212 GKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTS  291 (582)
T ss_dssp             TEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCS
T ss_pred             ccccccccccccccCCCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCcccccccc
Confidence                     0       00    0000  0011234456788876788888762                        23


Q ss_pred             eEEEEeCCCCeEEEEEc
Q 006913          207 ELYSLSAHSPYFNWIQD  223 (626)
Q Consensus       207 gL~~ld~~tg~~~w~~~  223 (626)
                      .+.++|.++|+++|...
T Consensus       292 SvvAld~~tG~~~W~~q  308 (582)
T d1flga_         292 GQVGVDPSSGEVKWFYQ  308 (582)
T ss_dssp             EEEEECTTTCCEEEEEE
T ss_pred             eeEEecccchhhhhccc
Confidence            58899999999999753

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.27  E-value=2.7e-09  Score=118.36  Aligned_cols=180  Identities=18%  Similarity=0.184  Sum_probs=109.9

Q ss_pred             CceeeeeEEeeCCEEEEEe--CCcEEEEcC--CCCEEEEEeCCCC--------CC-cccCeEEe-cC----CeEEEEE-C
Q 006913           36 AFRLSKPLIGEDGKIYACS--EKTLFAFES--NGTIAWSLDLDFT--------CN-IGTAPVHG-GT----GEVYIVA-E   96 (626)
Q Consensus        36 ~~~~Sspvid~dG~IwIgS--dggL~a~d~--~G~~~W~~~~~~~--------~~-i~~sp~iD-~d----G~IwVgT-~   96 (626)
                      ..+.++|++ .+|.||+++  .+.++++|.  +|+.+|++.....        +. ....+... .+    ..|++++ +
T Consensus        52 ~~~~~tPiv-~~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~d  130 (596)
T d1w6sa_          52 NGHEGAPLV-VDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLD  130 (596)
T ss_dssp             SCCCSCCEE-ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTT
T ss_pred             CCceeCCEE-ECCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCC
Confidence            456789999 889999986  367999994  6999999865321        00 01122221 11    2488888 8


Q ss_pred             CeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcC------CeEEEEeC-CCcEEEEECCccc
Q 006913           97 NRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKG------RALFAFMT-HGQLLWSAGPVLD  169 (626)
Q Consensus        97 ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~------gGL~a~d~-~G~~~w~~~~~~~  169 (626)
                      +.|+++|.++++.     .|.+......  ....+...+...++.|++|+..      +.|.+||. +|+++|++.....
T Consensus       131 g~l~Alda~tG~~-----~w~~~~~d~~--~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~  203 (596)
T d1w6sa_         131 GNVAALNAETGET-----VWKVENSDIK--VGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGP  203 (596)
T ss_dssp             SEEEEEETTTCCE-----EEEEECCCGG--GTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSC
T ss_pred             CCeEeeccccCce-----eccccccccc--cccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCC
Confidence            8999999999863     5554322111  1123334455668899998642      67999997 5999998632110


Q ss_pred             c--------ccc------cc--------ccccCCCCCccccceEEEcCCCeEEEEcCC----------------CeEEEE
Q 006913          170 Q--------LGY------RQ--------GCTKTDVDCYFTSVPVIDQCEGSIYISNTQ----------------GELYSL  211 (626)
Q Consensus       170 ~--------~~~------~~--------~~~~~l~~~~i~sspviD~~dG~LwIGT~~----------------GgL~~l  211 (626)
                      .        ...      ..        +......+......+.+|...+.+|+++.+                ..|.++
T Consensus       204 ~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAl  283 (596)
T d1w6sa_         204 DKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGR  283 (596)
T ss_dssp             HHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEE
T ss_pred             ccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccccccc
Confidence            0        000      00        000000112234556777667778888643                348889


Q ss_pred             eCCCCeEEEEEc
Q 006913          212 SAHSPYFNWIQD  223 (626)
Q Consensus       212 d~~tg~~~w~~~  223 (626)
                      |.++|++.|.+.
T Consensus       284 D~~TG~~~W~~Q  295 (596)
T d1w6sa_         284 DADTGEAKFGYQ  295 (596)
T ss_dssp             ETTTCCEEEEEE
T ss_pred             cccccccccccc
Confidence            999999888653

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.16  E-value=2.1e-08  Score=100.93  Aligned_cols=230  Identities=13%  Similarity=0.104  Sum_probs=137.6

Q ss_pred             ccccccCCceeeeeEEe-eCCEEEEEe--CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEECCeEEEEEC
Q 006913           29 KVPYRRSAFRLSKPLIG-EDGKIYACS--EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVAENRVLKVDL  104 (626)
Q Consensus        29 ~~~~~~~~~~~Sspvid-~dG~IwIgS--dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT~ggL~~id~  104 (626)
                      ++.......+--+|+-| .+|.||...  .+.|+++|. +|... .+..+.   ...++..+.+|++|+++.+|++.+|+
T Consensus        10 ~~~~~~~~~LgEgp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~~~---~~~~i~~~~dg~l~va~~~gl~~~d~   85 (295)
T d2ghsa1          10 RVLDETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPF---MGSALAKISDSKQLIASDDGLFLRDT   85 (295)
T ss_dssp             EEEECSCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSS---CEEEEEEEETTEEEEEETTEEEEEET
T ss_pred             EEEcCCCCeeeeCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEECCC---CcEEEEEecCCCEEEEEeCccEEeec
Confidence            33333444455678876 478888875  568999998 55543 233332   24456677899999999899999999


Q ss_pred             CCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcC-------CeEEEEeCCCcEEEEECCccccccccccc
Q 006913          105 LKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKG-------RALFAFMTHGQLLWSAGPVLDQLGYRQGC  177 (626)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~-------gGL~a~d~~G~~~w~~~~~~~~~~~~~~~  177 (626)
                      .++..     .......  .............+.+|+||+++..       +.++.++ +|+..-..    ..+.     
T Consensus        86 ~tg~~-----~~l~~~~--~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~-~g~~~~~~----~~~~-----  148 (295)
T d2ghsa1          86 ATGVL-----TLHAELE--SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTKLF----ADIS-----  148 (295)
T ss_dssp             TTCCE-----EEEECSS--TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEEEE----EEES-----
T ss_pred             cccee-----eEEeeee--cCCCcccceeeEECCCCCEEEEeccccccccceeEeeec-CCcEEEEe----eccC-----
Confidence            98742     2222211  1122334556678999999999752       2344443 34432211    0000     


Q ss_pred             ccCCCCCccccceEEEcCCCeEEEEc-CCCeEEEEeCCC--C-----eEEEEEcCCCCCcceeeeeecCCeEEEEEcCCC
Q 006913          178 TKTDVDCYFTSVPVIDQCEGSIYISN-TQGELYSLSAHS--P-----YFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRA  249 (626)
Q Consensus       178 ~~~l~~~~i~sspviD~~dG~LwIGT-~~GgL~~ld~~t--g-----~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG  249 (626)
                              +...++.+..+..+|+.. ..+.|++++.+.  +     ...+..........-.++.|.+|+|||+...++
T Consensus       149 --------~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g  220 (295)
T d2ghsa1         149 --------IPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEG  220 (295)
T ss_dssp             --------SEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTT
T ss_pred             --------CcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCC
Confidence                    111234443244566654 467788876542  1     112222111122345678899999999998788


Q ss_pred             EEEEEECCCCcEEEEEecCCCCCceeeEEEee--CCeEEEEEc
Q 006913          250 LVLALDTSSGNILWHKSVGPLGSAEYAPVVDS--NGWISVGSL  290 (626)
Q Consensus       250 ~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~--dG~IWVGT~  290 (626)
                      .+.++|+ +|+.+-....+.  ...++++...  ..+|||.|.
T Consensus       221 ~V~~~dp-~G~~~~~i~lP~--~~~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         221 AVDRYDT-DGNHIARYEVPG--KQTTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             EEEEECT-TCCEEEEEECSC--SBEEEEEEESTTSCEEEEEEB
T ss_pred             ceEEecC-CCcEeeEecCCC--CceEEEEEeCCCCCEEEEEEC
Confidence            9999995 688776655542  2355677742  357999874

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.06  E-value=1.3e-07  Score=93.63  Aligned_cols=230  Identities=10%  Similarity=0.098  Sum_probs=143.6

Q ss_pred             eeeEEeeCCEEEEEe--CCcEEEEcCCCCEEEEEeCCCC-CCcc---cCeE-EecCCeEEEEE---CCeEEEEECCCCcc
Q 006913           40 SKPLIGEDGKIYACS--EKTLFAFESNGTIAWSLDLDFT-CNIG---TAPV-HGGTGEVYIVA---ENRVLKVDLLKIGT  109 (626)
Q Consensus        40 Sspvid~dG~IwIgS--dggL~a~d~~G~~~W~~~~~~~-~~i~---~sp~-iD~dG~IwVgT---~ggL~~id~~~~~~  109 (626)
                      ..+++|.+|+|||+.  ++.+..||.+|++++.+..... ....   ..+. .+..+..++..   ++.|..+++.+.  
T Consensus        26 ~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~--  103 (279)
T d1q7fa_          26 SGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQ--  103 (279)
T ss_dssp             EEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSC--
T ss_pred             cEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccccc--
Confidence            466888999999985  5679999999998876643211 1111   1123 33446666654   357777776553  


Q ss_pred             ccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcC-CeEEEEeCCCcEEEEECCcccccccccccccCCCCCcccc
Q 006913          110 SESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKG-RALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTS  188 (626)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~-gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~s  188 (626)
                          ....+...     .......+..+.+|.+|+.... +.+..++++|+.+..++.       .    ...   ....
T Consensus       104 ----~~~~~~~~-----~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~-------~----~~~---~~~~  160 (279)
T d1q7fa_         104 ----FVRKFGAT-----ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGC-------S----KHL---EFPN  160 (279)
T ss_dssp             ----EEEEECTT-----TCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEEC-------T----TTC---SSEE
T ss_pred             ----ceeecCCC-----cccccceeccccCCcEEEEeeccceeeEeccCCceeecccc-------c----ccc---cccc
Confidence                12222211     0112344556788999998754 458889999887665411       0    000   0123


Q ss_pred             ceEEEcCCCeEEEEcC-CCeEEEEeCCCCeEEEEEcCC-CCCcceeeeeecCCeEEEEEcC-CCEEEEEECCCCcEEEEE
Q 006913          189 VPVIDQCEGSIYISNT-QGELYSLSAHSPYFNWIQDLS-SFDKAFTLTPGNNGYLYVTIPV-RALVLALDTSSGNILWHK  265 (626)
Q Consensus       189 spviD~~dG~LwIGT~-~GgL~~ld~~tg~~~w~~~~~-s~~~v~sI~~D~dG~LwVGT~~-gG~l~alD~~tG~~~w~~  265 (626)
                      .+.+|. +++||++.. .+.|+.+|.++ +..+..... .......|++|.+|+|||+... +..+..++ .+|++++..
T Consensus       161 ~i~~d~-~g~i~v~d~~~~~V~~~d~~G-~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~  237 (279)
T d1q7fa_         161 GVVVND-KQEIFISDNRAHCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISAL  237 (279)
T ss_dssp             EEEECS-SSEEEEEEGGGTEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEE
T ss_pred             eeeecc-ceeEEeeeccccceeeeecCC-ceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEE
Confidence            356775 889998765 56788999876 554443322 2344667899999999998643 34677777 579887665


Q ss_pred             ecCCCCCceeeEEEeeCCeEEEEEcCCeEEEE
Q 006913          266 SVGPLGSAEYAPVVDSNGWISVGSLDGLLYSF  297 (626)
Q Consensus       266 ~~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~  297 (626)
                      ...........++++++|+|||...+..|..|
T Consensus       238 ~~~~~~~~p~~vav~~dG~l~V~~~n~~v~~f  269 (279)
T d1q7fa_         238 ESKVKHAQCFDVALMDDGSVVLASKDYRLYIY  269 (279)
T ss_dssp             EESSCCSCEEEEEEETTTEEEEEETTTEEEEE
T ss_pred             eCCCCCCCEeEEEEeCCCcEEEEeCCCeEEEE
Confidence            33311123456778889999998877666555

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.06  E-value=1.9e-08  Score=98.79  Aligned_cols=229  Identities=16%  Similarity=0.171  Sum_probs=136.0

Q ss_pred             eeEEeeCCEEEEEe--C-CcEEEEcCCCCEEEEEeCCCCCCcccCeEEecCCeEEEEE-CCeEEEEECCCCccccceeEE
Q 006913           41 KPLIGEDGKIYACS--E-KTLFAFESNGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSESATQV  116 (626)
Q Consensus        41 spvid~dG~IwIgS--d-ggL~a~d~~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~~~  116 (626)
                      ..++|.+|+||++.  . +.+..++..+.......... ......+.++.+|+||++. .+++..+...+..      ..
T Consensus        18 ~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~------~~   90 (260)
T d1rwia_          18 GVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNG-LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNN------QT   90 (260)
T ss_dssp             EEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCS-CCSCCCEEECTTCCEEEEETTTEEEEECTTCSC------CE
T ss_pred             EEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCC-ccCceEEEEcCCCCEEEeeeeeceeeeeeeccc------ee
Confidence            44788999999975  2 45777776333221122211 1123467788999999987 6667666554321      11


Q ss_pred             EecCCCCCCCCCCeeEEEEEEcCCeEEEEEcC-CeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccceEEEcC
Q 006913          117 FYGTGSGKGGTGAIAGIAVSTSSSSVYINVKG-RALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQC  195 (626)
Q Consensus       117 ~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~-gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~  195 (626)
                      .....    . ......+..+.+|+||+.... ..++.++..+...+....        .    ..   .....+.+++ 
T Consensus        91 ~~~~~----~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~--------~----~~---~~p~~i~~~~-  149 (260)
T d1rwia_          91 VLPFD----G-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF--------T----GL---NDPDGVAVDN-  149 (260)
T ss_dssp             ECCCC----S-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCC--------C----SC---CSCCEEEECT-
T ss_pred             eeeee----e-eeecccccccccceeEeeccccccccccccccceeeeeee--------c----cc---CCcceeeecC-
Confidence            11110    0 112344566789999998643 557778877655554311        0    00   1123467786 


Q ss_pred             CCeEEEEcC-CCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCce
Q 006913          196 EGSIYISNT-QGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAE  274 (626)
Q Consensus       196 dG~LwIGT~-~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~  274 (626)
                      +|++|+... ++.|+.++.++... +............++.|.+|+|||+...++.++.+++.++... ......+ ...
T Consensus       150 ~g~~~v~~~~~~~i~~~d~~~~~~-~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~-~~~~~~~-~~P  226 (260)
T d1rwia_         150 SGNVYVTDTDNNRVVKLEAESNNQ-VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST-VLPFTGL-NTP  226 (260)
T ss_dssp             TCCEEEEEGGGTEEEEECTTTCCE-EECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCE-ECCCCSC-CCE
T ss_pred             CCCEeeecccccccccccccccee-eeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEE-EEccCCC-CCe
Confidence            888998854 55699999887533 3322222334567888999999999877788988886443322 2222221 224


Q ss_pred             eeEEEeeCCeEEEEEc-CCeEEEEcCC
Q 006913          275 YAPVVDSNGWISVGSL-DGLLYSFSPS  300 (626)
Q Consensus       275 sspvvD~dG~IWVGT~-~gGLy~~d~~  300 (626)
                      ..+++|++|+|||+.. ++.|.+|+..
T Consensus       227 ~~i~~d~~g~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         227 LAVAVDSDRTVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             EEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             EEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence            5688899999999864 3467667653

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.04  E-value=1.3e-07  Score=94.93  Aligned_cols=219  Identities=12%  Similarity=0.065  Sum_probs=129.7

Q ss_pred             cCeEEec-CCeEEEEE--CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC
Q 006913           81 TAPVHGG-TGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH  157 (626)
Q Consensus        81 ~sp~iD~-dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~  157 (626)
                      -+|+.|. +|.||...  .+.|+++|++++..    ..+..         ...++.+....+|+||+++. +||+.+|+.
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~----~~~~~---------~~~~~~i~~~~dg~l~va~~-~gl~~~d~~   86 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRK----TVHAL---------PFMGSALAKISDSKQLIASD-DGLFLRDTA   86 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEE----EEEEC---------SSCEEEEEEEETTEEEEEET-TEEEEEETT
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeE----EEEEC---------CCCcEEEEEecCCCEEEEEe-CccEEeecc
Confidence            4677664 78888875  68999999998731    11221         12345666778999999985 699999986


Q ss_pred             -CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcC-------CCeEEEEeCCCCeEEEEEcCCCCCc
Q 006913          158 -GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT-------QGELYSLSAHSPYFNWIQDLSSFDK  229 (626)
Q Consensus       158 -G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~-------~GgL~~ld~~tg~~~w~~~~~s~~~  229 (626)
                       |+.......       ..    .. ..+......+|+ +|+||+++.       .+.++++..  +++.....  ....
T Consensus        87 tg~~~~l~~~-------~~----~~-~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~~--g~~~~~~~--~~~~  149 (295)
T d2ghsa1          87 TGVLTLHAEL-------ES----DL-PGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVAK--GKVTKLFA--DISI  149 (295)
T ss_dssp             TCCEEEEECS-------ST----TC-TTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEET--TEEEEEEE--EESS
T ss_pred             cceeeEEeee-------ec----CC-CcccceeeEECC-CCCEEEEeccccccccceeEeeecC--CcEEEEee--ccCC
Confidence             765432211       00    00 011124467886 999999974       345666643  44433221  1112


Q ss_pred             ceeeeeecCC-eEEEEEcCCCEEEEEEC--CCC----cEEEEEecCCCCCceeeEEEeeCCeEEEEEcC-CeEEEEcCCC
Q 006913          230 AFTLTPGNNG-YLYVTIPVRALVLALDT--SSG----NILWHKSVGPLGSAEYAPVVDSNGWISVGSLD-GLLYSFSPSG  301 (626)
Q Consensus       230 v~sI~~D~dG-~LwVGT~~gG~l~alD~--~tG----~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~~-gGLy~~d~~g  301 (626)
                      ...++.+.++ .+|++....+.++.++.  ..+    +................+++|++|+||+++.+ ++|++|+++|
T Consensus       150 ~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G  229 (295)
T d2ghsa1         150 PNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG  229 (295)
T ss_dssp             EEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTC
T ss_pred             cceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCCC
Confidence            2334455555 58888766678877753  222    11111222211123456789999999999865 4699999999


Q ss_pred             CEEEEeeccCCCCccccCceEEEEEEe-cC-CcEEEEEe
Q 006913          302 VLNKFSKSDTSDSVIQSSPYWFHLLGP-SI-GLKAILCL  338 (626)
Q Consensus       302 ~~~~~~~~~~~~~~ilssp~V~~Il~D-sd-G~IwI~T~  338 (626)
                      +......        ++.+.+.+++-. .+ ..|||-|.
T Consensus       230 ~~~~~i~--------lP~~~~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         230 NHIARYE--------VPGKQTTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             CEEEEEE--------CSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             cEeeEec--------CCCCceEEEEEeCCCCCEEEEEEC
Confidence            8776554        233445555443 34 56776543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.03  E-value=3.9e-08  Score=96.44  Aligned_cols=227  Identities=14%  Similarity=0.129  Sum_probs=134.6

Q ss_pred             CeEEecCCeEEEEE--C-CeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCCC
Q 006913           82 APVHGGTGEVYIVA--E-NRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTHG  158 (626)
Q Consensus        82 sp~iD~dG~IwVgT--~-ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~G  158 (626)
                      .+.+|.+|++|++.  . +.+..+++.+..      .........    . ....+..+.+|+||++...+++..+...+
T Consensus        18 ~vavd~dG~i~v~~~~~~~~i~~~~~~~~~------~~~~~~~~~----~-~p~gvav~~~g~i~v~d~~~~~i~~~~~~   86 (260)
T d1rwia_          18 GVAVDSAGNVYVTSEGMYGRVVKLATGSTG------TTVLPFNGL----Y-QPQGLAVDGAGTVYVTDFNNRVVTLAAGS   86 (260)
T ss_dssp             EEEECTTCCEEEEECSSSCEEEEEC----C------EEECCCCSC----C-SCCCEEECTTCCEEEEETTTEEEEECTTC
T ss_pred             EEEEcCCCCEEEEEcCCCCEEEEEcCCCce------EEEeccCCc----c-CceEEEEcCCCCEEEeeeeeceeeeeeec
Confidence            45789999999975  3 567777665532      111111100    0 11223456789999998888888777543


Q ss_pred             cEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcC-CCeEEEEeCCCCeEEEEEcCCCCCcceeeeeec
Q 006913          159 QLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT-QGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGN  237 (626)
Q Consensus       159 ~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~-~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~  237 (626)
                      ...+...     ..       ..   .....+++|. +|+||+... +..++.++..+. ..+............++.+.
T Consensus        87 ~~~~~~~-----~~-------~~---~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~i~~~~  149 (260)
T d1rwia_          87 NNQTVLP-----FD-------GL---NYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSK-TQTVLPFTGLNDPDGVAVDN  149 (260)
T ss_dssp             SCCEECC-----CC-------SC---CSEEEEEECT-TCCEEEEEGGGTEEEEECTTCS-SCEECCCCSCCSCCEEEECT
T ss_pred             cceeeee-----ee-------ee---eecccccccc-cceeEeeccccccccccccccc-eeeeeeecccCCcceeeecC
Confidence            3333210     00       00   0123467786 889999865 456788877764 33443322333455778888


Q ss_pred             CCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEEEEEc-CCeEEEEcCCCCEEEEeeccCCCCcc
Q 006913          238 NGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSL-DGLLYSFSPSGVLNKFSKSDTSDSVI  316 (626)
Q Consensus       238 dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~-~gGLy~~d~~g~~~~~~~~~~~~~~i  316 (626)
                      +|++|++....+.++.++..+ ...+......+ .....+++|++|+||++.. ++.|+++++++.......   ...  
T Consensus       150 ~g~~~v~~~~~~~i~~~d~~~-~~~~~~~~~~~-~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~---~~~--  222 (260)
T d1rwia_         150 SGNVYVTDTDNNRVVKLEAES-NNQVVLPFTDI-TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLP---FTG--  222 (260)
T ss_dssp             TCCEEEEEGGGTEEEEECTTT-CCEEECCCSSC-CSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECC---CCS--
T ss_pred             CCCEeeecccccccccccccc-ceeeeeecccc-CCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEc---cCC--
Confidence            999999987777899998654 33333322222 2245678899999999986 457999998765443322   111  


Q ss_pred             ccCceEEEEEEecCCcEEEEEeeecCeeEE
Q 006913          317 QSSPYWFHLLGPSIGLKAILCLMVVGQFSS  346 (626)
Q Consensus       317 lssp~V~~Il~DsdG~IwI~T~t~~Ggl~~  346 (626)
                      +..|  ..|..|++|+||+. ....+.+..
T Consensus       223 ~~~P--~~i~~d~~g~l~va-d~~~~rI~~  249 (260)
T d1rwia_         223 LNTP--LAVAVDSDRTVYVA-DRGNDRVVK  249 (260)
T ss_dssp             CCCE--EEEEECTTCCEEEE-EGGGTEEEE
T ss_pred             CCCe--EEEEEeCCCCEEEE-ECCCCEEEE
Confidence            2223  46888999999954 333344443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.02  E-value=2.7e-07  Score=91.27  Aligned_cols=226  Identities=12%  Similarity=0.111  Sum_probs=139.4

Q ss_pred             cCeEEecCCeEEEEE--CCeEEEEECCCCccccceeEEEecCCCCCCC-CCCeeEEEEEEcCCeEEEEEc--CCeEEEEe
Q 006913           81 TAPVHGGTGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGSGKGG-TGAIAGIAVSTSSSSVYINVK--GRALFAFM  155 (626)
Q Consensus        81 ~sp~iD~dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~-~~~~I~s~~~d~dG~LwIgT~--~gGL~a~d  155 (626)
                      ..+.+|.+|+|||+.  ++.|.++|+++.      ....++....... ..........+..+..++...  ++.+..++
T Consensus        26 ~gvavd~dg~i~VaD~~n~rI~v~d~~G~------~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~   99 (279)
T d1q7fa_          26 SGVAVNAQNDIIVADTNNHRIQIFDKEGR------FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN   99 (279)
T ss_dssp             EEEEECTTCCEEEEEGGGTEEEEECTTSC------EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred             cEEEEcCCCCEEEEECCCCEEEEEeCCCC------EEEEecccCCCcccccccccccccccccccceeccCCcccccccc
Confidence            356789999999986  688999998763      2333322111111 111222333445566555432  35677778


Q ss_pred             CCCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcC-CCeEEEEeCCCCeEEEEEc-CCCCCcceee
Q 006913          156 THGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT-QGELYSLSAHSPYFNWIQD-LSSFDKAFTL  233 (626)
Q Consensus       156 ~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~-~GgL~~ld~~tg~~~w~~~-~~s~~~v~sI  233 (626)
                      ++|+....+..       .     .   ......++++. +|.+|+... .+.+..+++++. +..... .........+
T Consensus       100 ~~g~~~~~~~~-------~-----~---~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~g~-~~~~~g~~~~~~~~~~i  162 (279)
T d1q7fa_         100 QYGQFVRKFGA-------T-----I---LQHPRGVTVDN-KGRIIVVECKVMRVIIFDQNGN-VLHKFGCSKHLEFPNGV  162 (279)
T ss_dssp             TTSCEEEEECT-------T-----T---CSCEEEEEECT-TSCEEEEETTTTEEEEECTTSC-EEEEEECTTTCSSEEEE
T ss_pred             ccccceeecCC-------C-----c---ccccceecccc-CCcEEEEeeccceeeEeccCCc-eeeccccccccccccee
Confidence            88887655411       0     0   00123456775 888998865 456888988774 433322 1223345567


Q ss_pred             eeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEEEEEc-CC-eEEEEcCCCCEEEEeeccC
Q 006913          234 TPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSL-DG-LLYSFSPSGVLNKFSKSDT  311 (626)
Q Consensus       234 ~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~-~g-GLy~~d~~g~~~~~~~~~~  311 (626)
                      +.|.+|++|++....+.++.+| .+|+.++.............+++|++|+|||+.. ++ .|..|+++|++.+......
T Consensus       163 ~~d~~g~i~v~d~~~~~V~~~d-~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~~  241 (279)
T d1q7fa_         163 VVNDKQEIFISDNRAHCVKVFN-YEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKV  241 (279)
T ss_dssp             EECSSSEEEEEEGGGTEEEEEE-TTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESS
T ss_pred             eeccceeEEeeeccccceeeee-cCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCCCEEEEEeCCC
Confidence            8889999999987778899999 4788777653321112345678999999999863 33 5899999998766443111


Q ss_pred             CCCccccCceEEEEEEecCCcEEEE
Q 006913          312 SDSVIQSSPYWFHLLGPSIGLKAIL  336 (626)
Q Consensus       312 ~~~~ilssp~V~~Il~DsdG~IwI~  336 (626)
                            ..+....|..+.+|.||+.
T Consensus       242 ------~~~~p~~vav~~dG~l~V~  260 (279)
T d1q7fa_         242 ------KHAQCFDVALMDDGSVVLA  260 (279)
T ss_dssp             ------CCSCEEEEEEETTTEEEEE
T ss_pred             ------CCCCEeEEEEeCCCcEEEE
Confidence                  1122356778999999864

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=98.97  E-value=1.1e-07  Score=104.40  Aligned_cols=224  Identities=21%  Similarity=0.320  Sum_probs=142.3

Q ss_pred             CEEEEEeCCCCCCcccCeEEecCCeEEEEE-CCeEEEEECCCCccccceeEEEecCCCCC----CCCCCeeEEEEEEcCC
Q 006913           66 TIAWSLDLDFTCNIGTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGK----GGTGAIAGIAVSTSSS  140 (626)
Q Consensus        66 ~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~----~~~~~~I~s~~~d~dG  140 (626)
                      ++.|.+..+.......+|++ .+|.||+++ ++.|+++|..+++     ..|.+......    ......+...+...++
T Consensus        45 ~~aW~~~~~~~~~~~stPiv-~~g~vyv~t~~~~v~AlDa~tG~-----~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (560)
T d1kv9a2          45 GLAWYMDLDNTRGLEATPLF-HDGVIYTSMSWSRVIAVDAASGK-----ELWRYDPEVAKVKARTSCCDAVNRGVALWGD  118 (560)
T ss_dssp             EEEEEEECSCCSCCCCCCEE-ETTEEEEEEGGGEEEEEETTTCC-----EEEEECCCCCGGGGGGCTTCSCCCCCEEEBT
T ss_pred             eEEEEEECCCCCCcEeCCEE-ECCEEEEECCCCeEEEEeCCCCC-----EEEEECCCCCccccccccccccccCcceeCC
Confidence            46798887643234467887 569999998 7899999999986     46766432110    0111112222334578


Q ss_pred             eEEEEEcCCeEEEEeC-CCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcC------CCeEEEEeC
Q 006913          141 SVYINVKGRALFAFMT-HGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT------QGELYSLSA  213 (626)
Q Consensus       141 ~LwIgT~~gGL~a~d~-~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~------~GgL~~ld~  213 (626)
                      .||+++.++.|+++|. +|+.+|....  .  .     ...  ...+..+|++.  ++.|+++..      .|.|++||.
T Consensus       119 ~v~~~~~~g~l~Alda~tG~~~w~~~~--~--~-----~~~--~~~~~~~p~v~--~~~vivg~~~~~~~~~G~v~a~D~  185 (560)
T d1kv9a2         119 KVYVGTLDGRLIALDAKTGKAIWSQQT--T--D-----PAK--PYSITGAPRVV--KGKVIIGNGGAEYGVRGFVSAYDA  185 (560)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEEC--S--C-----TTS--SCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEET
T ss_pred             eEEEEeCCCEEEEEECCCCcEEeccCc--c--C-----ccc--ceeeeeeeeee--cCcccccccceeccccceEEEEEC
Confidence            9999999999999997 5999998521  0  0     000  11233567776  788999864      367999999


Q ss_pred             CCCeEEEEEcCCC-C----------------------------Ccc-eeeeee-cCCeEEEEEcC---------------
Q 006913          214 HSPYFNWIQDLSS-F----------------------------DKA-FTLTPG-NNGYLYVTIPV---------------  247 (626)
Q Consensus       214 ~tg~~~w~~~~~s-~----------------------------~~v-~sI~~D-~dG~LwVGT~~---------------  247 (626)
                      ++|+..|..+... .                            ..+ ..+..| ..+.+|+++..               
T Consensus       186 ~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~  265 (560)
T d1kv9a2         186 DTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGD  265 (560)
T ss_dssp             TTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCC
T ss_pred             CCceEEeeeeeccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCc
Confidence            9999999865310 0                            000 113344 35678887621               


Q ss_pred             ---CCEEEEEECCCCcEEEEEecCCCC-----C-c-eeeEEEeeCC----eEEEEEcCCeEEEEcCC-CCEEEEee
Q 006913          248 ---RALVLALDTSSGNILWHKSVGPLG-----S-A-EYAPVVDSNG----WISVGSLDGLLYSFSPS-GVLNKFSK  308 (626)
Q Consensus       248 ---gG~l~alD~~tG~~~w~~~~~~l~-----~-~-~sspvvD~dG----~IWVGT~~gGLy~~d~~-g~~~~~~~  308 (626)
                         ...++++|..||++.|.++.....     . . .....+..+|    .+..++.+|-+|++|+. |+.+|..+
T Consensus       266 n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~  341 (560)
T d1kv9a2         266 NLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEK  341 (560)
T ss_dssp             CTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred             cccceeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccccccc
Confidence               246899999999999987543200     0 0 1101111233    36667778889999985 88888654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.95  E-value=1.3e-07  Score=95.89  Aligned_cols=235  Identities=10%  Similarity=0.084  Sum_probs=136.5

Q ss_pred             eeeeeEEeeCCEEEEEeC---------CcEEEEcC-CCCEEEEEeCCCC---CCcccCeEEecCCe-EEEEE-CCeEEEE
Q 006913           38 RLSKPLIGEDGKIYACSE---------KTLFAFES-NGTIAWSLDLDFT---CNIGTAPVHGGTGE-VYIVA-ENRVLKV  102 (626)
Q Consensus        38 ~~Sspvid~dG~IwIgSd---------ggL~a~d~-~G~~~W~~~~~~~---~~i~~sp~iD~dG~-IwVgT-~ggL~~i  102 (626)
                      ....|++|.+|++|+.+.         +.|+++|. ++.... ...+..   ...-..+.++.+|+ +|++. .+++.++
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~-~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~   97 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-ICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV   97 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEE-EECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEE-EECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEE
Confidence            345789999999999752         34899998 555432 222111   01223567788876 67766 6899999


Q ss_pred             ECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcC----------------CeEEEEeCCCcEEEEECC
Q 006913          103 DLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKG----------------RALFAFMTHGQLLWSAGP  166 (626)
Q Consensus       103 d~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~----------------gGL~a~d~~G~~~w~~~~  166 (626)
                      ++++..      ........ ....-........+.+|+||++...                +.|++++++|+...... 
T Consensus        98 ~~~g~~------~~~~~~~~-~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~-  169 (314)
T d1pjxa_          98 QTDGTF------EEIAKKDS-EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDT-  169 (314)
T ss_dssp             ETTSCE------EECCSBCT-TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEE-
T ss_pred             eCCCcE------EEEEeccc-cccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCceeEeeC-
Confidence            998752      11111110 0000011233556889999998532                35888888776543220 


Q ss_pred             cccccccccccccCCCCCccccceEEEcCC----CeEEEEc-CCCeEEEEeCCC-CeEEEEE---cCCC--CCcceeeee
Q 006913          167 VLDQLGYRQGCTKTDVDCYFTSVPVIDQCE----GSIYISN-TQGELYSLSAHS-PYFNWIQ---DLSS--FDKAFTLTP  235 (626)
Q Consensus       167 ~~~~~~~~~~~~~~l~~~~i~sspviD~~d----G~LwIGT-~~GgL~~ld~~t-g~~~w~~---~~~s--~~~v~sI~~  235 (626)
                         .+.    .         ...+++...+    ..||++. ..+.|++++.+. +.+.+..   ....  ....-.++.
T Consensus       170 ---~~~----~---------pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiav  233 (314)
T d1pjxa_         170 ---AFQ----F---------PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDF  233 (314)
T ss_dssp             ---EES----S---------EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEE
T ss_pred             ---Ccc----e---------eeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEE
Confidence               000    0         0112332211    1588874 466788876432 3443321   2211  112335788


Q ss_pred             ecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCC-eEEEEEc-CCeEEEEcC
Q 006913          236 GNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNG-WISVGSL-DGLLYSFSP  299 (626)
Q Consensus       236 D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG-~IWVGT~-~gGLy~~d~  299 (626)
                      |.+|+|||+...++.++.+|+.+|...-....+  ....+++++..++ +|||.+. ++.|++++.
T Consensus       234 D~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p--~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~  297 (314)
T d1pjxa_         234 DEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCP--FEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             BTTCCEEEEEETTTEEEEECTTCBSCSEEEECS--SSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             ecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECC--CCCEEEEEEeCCCCEEEEEECCCCcEEEEEC
Confidence            999999999877789999998877654333332  1234556777666 5999874 467888874

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.94  E-value=2e-07  Score=102.52  Aligned_cols=223  Identities=14%  Similarity=0.185  Sum_probs=142.1

Q ss_pred             CEEEEEeCCCCCCcccCeEEecCCeEEEEE--CCeEEEEEC-CCCccccceeEEEecCCCCCC----CCCCeeEEEEEEc
Q 006913           66 TIAWSLDLDFTCNIGTAPVHGGTGEVYIVA--ENRVLKVDL-LKIGTSESATQVFYGTGSGKG----GTGAIAGIAVSTS  138 (626)
Q Consensus        66 ~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT--~ggL~~id~-~~~~~~~~~~~~~~~~~~~~~----~~~~~I~s~~~d~  138 (626)
                      ++.|.+..+.......+|++ .+|.||+++  ++.|+++|. ++++     ..|.+.......    .....+..-+...
T Consensus        41 ~~aW~~~~g~~~~~~~tP~v-~~g~vyv~t~~~~~v~Alda~~tG~-----~~W~~~~~~~~~~~~~~~~~~~~rg~a~~  114 (571)
T d2ad6a1          41 KAAWSFSTGVLNGHEGAPLV-IGDMMYVHSAFPNNTYALNLNDPGK-----IVWQHKPKQDASTKAVMCCDVVDRGLAYG  114 (571)
T ss_dssp             EEEEEEECSCCSCCCSCCEE-ETTEEEEECSTTTCEEEEETTCTTS-----EEEEECCCCCGGGGGGCTTCSCCCCCEEE
T ss_pred             eEEEEEeCCCCCCcccCCEE-ECCEEEEecCCCCeEEEEeCCCCCc-----eEEEecCCCCcccccccccCcCCCcceee
Confidence            56799887543234467887 579999997  478999997 4675     467664321110    0001111112235


Q ss_pred             CCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcC------CCeEEEE
Q 006913          139 SSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT------QGELYSL  211 (626)
Q Consensus       139 dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~------~GgL~~l  211 (626)
                      +++||+++.++.|+++|.. |++.|..+..    ...       ....+.++|++.  ++.|+++..      .|.|+++
T Consensus       115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~----~~~-------~~~~~t~~p~v~--~~~vivg~~~~~~~~~G~v~a~  181 (571)
T d2ad6a1         115 AGQIVKKQANGHLLALDAKTGKINWEVEVC----DPK-------VGSTLTQAPFVA--KDTVLMGCSGAELGVRGAVNAF  181 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECC----CGG-------GTCBCCSCCEEE--TTEEEEECBCGGGTCCCEEEEE
T ss_pred             CCeEEEEeCCCcEEeeehhhhhhhcccccc----ccc-------cccceeecCeEe--CCeEEEeeccccccccCcEEEE
Confidence            7899999999999999985 9999985210    000       012234667776  789999885      5789999


Q ss_pred             eCCCCeEEEEEcCCCC------------------------------------Ccc-eeeeee-cCCeEEEEEcC------
Q 006913          212 SAHSPYFNWIQDLSSF------------------------------------DKA-FTLTPG-NNGYLYVTIPV------  247 (626)
Q Consensus       212 d~~tg~~~w~~~~~s~------------------------------------~~v-~sI~~D-~dG~LwVGT~~------  247 (626)
                      |.++|++.|.......                                    ..+ ..+..| ..|.+|+++..      
T Consensus       182 D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~  261 (571)
T d2ad6a1         182 DLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNE  261 (571)
T ss_dssp             ETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCG
T ss_pred             ECCCCcEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccc
Confidence            9999999997542100                                    000 123445 34578888741      


Q ss_pred             ---------CCEEEEEECCCCcEEEEEecCCC-----C---CceeeEEEeeCC----eEEEEEcCCeEEEEcCC-CCEEE
Q 006913          248 ---------RALVLALDTSSGNILWHKSVGPL-----G---SAEYAPVVDSNG----WISVGSLDGLLYSFSPS-GVLNK  305 (626)
Q Consensus       248 ---------gG~l~alD~~tG~~~w~~~~~~l-----~---~~~sspvvD~dG----~IWVGT~~gGLy~~d~~-g~~~~  305 (626)
                               ...++++|..||+..|.++..+.     .   ......+. .+|    .++.++.+|-+|++|+. |+.+|
T Consensus       262 ~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~-~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~  340 (571)
T d2ad6a1         262 TMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQP-VNGKMTPLLSHIDRNGILYTLNRENGNLIV  340 (571)
T ss_dssp             GGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEE-ETTEEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             cccccccccccceeeeeccchhheecccccCccccccccccccceeeee-ccCccccceeeccccceEEEEecCCCcEee
Confidence                     24789999999999998765320     0   11111222 244    35677788999999975 88887


Q ss_pred             Eee
Q 006913          306 FSK  308 (626)
Q Consensus       306 ~~~  308 (626)
                      ..+
T Consensus       341 ~~~  343 (571)
T d2ad6a1         341 AEK  343 (571)
T ss_dssp             EEE
T ss_pred             eec
Confidence            544

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=98.91  E-value=2.1e-07  Score=102.15  Aligned_cols=225  Identities=20%  Similarity=0.275  Sum_probs=142.4

Q ss_pred             CEEEEEeCCCCCCcccCeEEecCCeEEEEE-CCeEEEEECCCCccccceeEEEecCCCCC----CCCCCeeEEEEEEcCC
Q 006913           66 TIAWSLDLDFTCNIGTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGK----GGTGAIAGIAVSTSSS  140 (626)
Q Consensus        66 ~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~----~~~~~~I~s~~~d~dG  140 (626)
                      ++.|.+..+....+.++|++ .+|.||+++ ++.|+++|..+++     ..|.+......    ......+...+...++
T Consensus        56 ~~aW~~~~~~~~~~~stPiv-~~g~vyv~t~~~~v~AlDa~TG~-----~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~  129 (573)
T d1kb0a2          56 GLAWSYNLESTRGVEATPVV-VDGIMYVSASWSVVHAIDTRTGN-----RIWTYDPQIDRSTGFKGCCDVVNRGVALWKG  129 (573)
T ss_dssp             EEEEEEECCCCSCCCCCCEE-ETTEEEEECGGGCEEEEETTTTE-----EEEEECCCCCGGGGGGSSSCSCCCCCEEETT
T ss_pred             eEEEEEECCCCCCcEECCEE-ECCEEEEECCCCeEEEEeCCCCC-----eEEEeCCCCCcccccccccccccccceEECC
Confidence            45698877543334567887 479999998 7889999999986     46766432110    0111122223344688


Q ss_pred             eEEEEEcCCeEEEEeC-CCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcC------CCeEEEEeC
Q 006913          141 SVYINVKGRALFAFMT-HGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT------QGELYSLSA  213 (626)
Q Consensus       141 ~LwIgT~~gGL~a~d~-~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~------~GgL~~ld~  213 (626)
                      ++|+++.++.|+++|. +|+.+|.....-.    .    ..  ...+..+|++.  ++.|++|+.      .|.|+++|.
T Consensus       130 ~v~~~t~~g~l~alda~tG~~~W~~~~~~~----~----~~--~~~~~~~p~v~--~~~vivg~~~~~~~~~G~v~a~D~  197 (573)
T d1kb0a2         130 KVYVGAWDGRLIALDAATGKEVWHQNTFEG----Q----KG--SLTITGAPRVF--KGKVIIGNGGAEYGVRGYITAYDA  197 (573)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEETTTT----C----CS--SCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEET
T ss_pred             cEEEEecccceeeeccccccceecccCccC----C----cc--eEEeecceEEE--eccEEEeeccccccccceEEEEec
Confidence            9999999999999997 5999998521000    0    00  11123556776  789999864      367999999


Q ss_pred             CCCeEEEEEcCCC----C--------------------------Ccc-eeeeeec-CCeEEEEEcC--------------
Q 006913          214 HSPYFNWIQDLSS----F--------------------------DKA-FTLTPGN-NGYLYVTIPV--------------  247 (626)
Q Consensus       214 ~tg~~~w~~~~~s----~--------------------------~~v-~sI~~D~-dG~LwVGT~~--------------  247 (626)
                      ++|++.|..+...    .                          ..+ ..+..|. .|.+|+++..              
T Consensus       198 ~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g  277 (573)
T d1kb0a2         198 ETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGG  277 (573)
T ss_dssp             TTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCC
T ss_pred             CCccceeeeeeccccCCCCCCcccccccccccCCCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccc
Confidence            9999999854310    0                          000 1234453 4577776521              


Q ss_pred             ----CCEEEEEECCCCcEEEEEecCCCC-------CceeeEEEeeCC----eEEEEEcCCeEEEEcCC-CCEEEEee
Q 006913          248 ----RALVLALDTSSGNILWHKSVGPLG-------SAEYAPVVDSNG----WISVGSLDGLLYSFSPS-GVLNKFSK  308 (626)
Q Consensus       248 ----gG~l~alD~~tG~~~w~~~~~~l~-------~~~sspvvD~dG----~IWVGT~~gGLy~~d~~-g~~~~~~~  308 (626)
                          ...++++|..+|++.|.++..+..       ..........+|    .++.++.+|.+|++|++ |+..|..+
T Consensus       278 ~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~  354 (573)
T d1kb0a2         278 DNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKN  354 (573)
T ss_dssp             CCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred             cccccceEEEecccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEecccccccccccc
Confidence                236899999999999987554210       001111122233    46667788999999975 88888655

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.91  E-value=6.7e-07  Score=90.38  Aligned_cols=237  Identities=11%  Similarity=0.097  Sum_probs=137.0

Q ss_pred             CCceeeeeEEeeCCEEEEEe--CCcEEEEcCCCC-EEEEEeCCCCCCcccCeEEecCCeEEEEE------CCeEEEEECC
Q 006913           35 SAFRLSKPLIGEDGKIYACS--EKTLFAFESNGT-IAWSLDLDFTCNIGTAPVHGGTGEVYIVA------ENRVLKVDLL  105 (626)
Q Consensus        35 ~~~~~Sspvid~dG~IwIgS--dggL~a~d~~G~-~~W~~~~~~~~~i~~sp~iD~dG~IwVgT------~ggL~~id~~  105 (626)
                      .+...-.|+.|.+|+||+..  .+.|+++++++. ..... .... .....+.++.+|++|++.      .+++..++..
T Consensus        38 ~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~-~~~~-~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~  115 (319)
T d2dg1a1          38 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF-VSHK-ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN  115 (319)
T ss_dssp             SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE-ECSS-SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT
T ss_pred             CCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEE-eCCC-CCeeEEEECCCCCEEEEecCCCccceeEEEEcCC
Confidence            34445789999999999986  567999998554 33222 1111 123456778899999985      2468888877


Q ss_pred             CCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcC-------CeEEEEeCCCcEEEEECCcccccccccccc
Q 006913          106 KIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKG-------RALFAFMTHGQLLWSAGPVLDQLGYRQGCT  178 (626)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~-------gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~  178 (626)
                      +...     .......    ...........+.+|+||+++..       +++++++++|+......   ..+.      
T Consensus       116 ~~~~-----~~~~~~~----~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~---~~~~------  177 (319)
T d2dg1a1         116 GDNL-----QDIIEDL----STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII---QNIS------  177 (319)
T ss_dssp             SCSC-----EEEECSS----SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE---EEES------
T ss_pred             Ccee-----eeeccCC----CcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEe---eccc------
Confidence            6532     1111111    11122344667899999998743       45888888765332210   0000      


Q ss_pred             cCCCCCccccceEEEcCCCeEEEEcC-CCeEEEEeCCCC-eEEEEE------cCCCCCcceeeeeecCCeEEEEEcCCCE
Q 006913          179 KTDVDCYFTSVPVIDQCEGSIYISNT-QGELYSLSAHSP-YFNWIQ------DLSSFDKAFTLTPGNNGYLYVTIPVRAL  250 (626)
Q Consensus       179 ~~l~~~~i~sspviD~~dG~LwIGT~-~GgL~~ld~~tg-~~~w~~------~~~s~~~v~sI~~D~dG~LwVGT~~gG~  250 (626)
                             ....+.++..++.||++.. .+.|++++.+.. ......      ........-.+++|.+|+|||+...++.
T Consensus       178 -------~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~  250 (319)
T d2dg1a1         178 -------VANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGR  250 (319)
T ss_dssp             -------SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTE
T ss_pred             -------eeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCE
Confidence                   1122566652456998854 567888865421 211110      1111122335789999999999987889


Q ss_pred             EEEEECCCCcEEEEEecCC--CC--CceeeEEEeeC-CeEEEEEc------CCeEEEEcC
Q 006913          251 VLALDTSSGNILWHKSVGP--LG--SAEYAPVVDSN-GWISVGSL------DGLLYSFSP  299 (626)
Q Consensus       251 l~alD~~tG~~~w~~~~~~--l~--~~~sspvvD~d-G~IWVGT~------~gGLy~~d~  299 (626)
                      +..+|+ +|+.+.....+.  ..  ....++....+ ..+|+.+.      ++.||+++.
T Consensus       251 V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~  309 (319)
T d2dg1a1         251 VLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG  309 (319)
T ss_dssp             EEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred             EEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeC
Confidence            999995 788876654431  00  12234444433 35666553      234565554

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.84  E-value=7.9e-07  Score=98.08  Aligned_cols=224  Identities=14%  Similarity=0.210  Sum_probs=139.8

Q ss_pred             CEEEEEeCCCCCCcccCeEEecCCeEEEEE--CCeEEEEEC-CCCccccceeEEEecCCCCCC----CC-CCe-eEEEEE
Q 006913           66 TIAWSLDLDFTCNIGTAPVHGGTGEVYIVA--ENRVLKVDL-LKIGTSESATQVFYGTGSGKG----GT-GAI-AGIAVS  136 (626)
Q Consensus        66 ~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT--~ggL~~id~-~~~~~~~~~~~~~~~~~~~~~----~~-~~~-I~s~~~  136 (626)
                      ++.|.+..+.....-.+|++ .+|.||+++  .+.|+++|. ++++     ..|.+.......    .. ... .+...-
T Consensus        41 ~~aW~~~~~~~~~~~~tPiv-~~g~ly~~t~~~~~v~a~d~~~tG~-----~~W~~~~~~~~~~~~~~~~~~~~RGv~~~  114 (596)
T d1w6sa_          41 RPAWTFSTGLLNGHEGAPLV-VDGKMYIHTSFPNNTFALGLDDPGT-----ILWQDKPKQNPAARAVACCDLVNRGLAYW  114 (596)
T ss_dssp             EEEEEEECSCCSCCCSCCEE-ETTEEEEECSTTTCEEEEETTCTTS-----EEEEECCCCCGGGGGGCSSCSCCCCCEEE
T ss_pred             eEEEEEECCCCCCceeCCEE-ECCEEEEeeCCCCcEEEEeCCCCCC-----EEEEecCCCCcccccccccccccceeEEe
Confidence            45698877543234457887 568999987  478999996 5675     467765432110    00 001 011111


Q ss_pred             E----cCCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcC------C
Q 006913          137 T----SSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT------Q  205 (626)
Q Consensus       137 d----~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~------~  205 (626)
                      .    ....|++++.++.|+++|.. |+.+|.....  ..  ..       ...+.++|++.  ++.|++|+.      .
T Consensus       115 ~~~~~~~~~v~~~t~dg~l~Alda~tG~~~w~~~~~--d~--~~-------~~~~t~~P~v~--~~~vivg~~~~e~~~~  181 (596)
T d1w6sa_         115 PGDGKTPALILKTQLDGNVAALNAETGETVWKVENS--DI--KV-------GSTLTIAPYVV--KDKVIIGSSGAELGVR  181 (596)
T ss_dssp             CCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECC--CG--GG-------TCBCCSCCEEE--TTEEEECCBCGGGTCC
T ss_pred             cCCCCCceEEEEEeCCCCeEeeccccCceecccccc--cc--cc-------ccccccCCcEE--CCeEEEeecccccccc
Confidence            1    12369999999999999975 9999986210  00  00       12245678887  789999875      3


Q ss_pred             CeEEEEeCCCCeEEEEEcCCC-------------------------------------CCcceeeeee-cCCeEEEEEcC
Q 006913          206 GELYSLSAHSPYFNWIQDLSS-------------------------------------FDKAFTLTPG-NNGYLYVTIPV  247 (626)
Q Consensus       206 GgL~~ld~~tg~~~w~~~~~s-------------------------------------~~~v~sI~~D-~dG~LwVGT~~  247 (626)
                      |.|.+||.++|++.|......                                     ...-..+..| ..+.+|+++..
T Consensus       182 G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~  261 (596)
T d1w6sa_         182 GYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGN  261 (596)
T ss_dssp             CEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCC
T ss_pred             CceEEEECCCCcEEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccc
Confidence            789999999999999853210                                     0001123445 46689998632


Q ss_pred             ---------------CCEEEEEECCCCcEEEEEecCCCC----CceeeE-E---EeeCC----eEEEEEcCCeEEEEcCC
Q 006913          248 ---------------RALVLALDTSSGNILWHKSVGPLG----SAEYAP-V---VDSNG----WISVGSLDGLLYSFSPS  300 (626)
Q Consensus       248 ---------------gG~l~alD~~tG~~~w~~~~~~l~----~~~ssp-v---vD~dG----~IWVGT~~gGLy~~d~~  300 (626)
                                     ...++++|..||+..|+++..+..    .....+ +   .+.+|    .+..++.+|.+|.+|+.
T Consensus       262 ~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~  341 (596)
T d1w6sa_         262 PAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRT  341 (596)
T ss_dssp             CSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETT
T ss_pred             ccccccccccccccccccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCC
Confidence                           246889999999999987654211    011111 1   12344    36667788999999984


Q ss_pred             -CCEEEEee
Q 006913          301 -GVLNKFSK  308 (626)
Q Consensus       301 -g~~~~~~~  308 (626)
                       |+.++..+
T Consensus       342 tG~~i~~~~  350 (596)
T d1w6sa_         342 DGALVSANK  350 (596)
T ss_dssp             TCCEEEEEE
T ss_pred             CCceeeecc
Confidence             88887654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.84  E-value=6.5e-07  Score=90.53  Aligned_cols=226  Identities=16%  Similarity=0.157  Sum_probs=125.6

Q ss_pred             cCeEEecCCeEEEEE---------CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCC-eEEEEEcCCe
Q 006913           81 TAPVHGGTGEVYIVA---------ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSS-SVYINVKGRA  150 (626)
Q Consensus        81 ~sp~iD~dG~IwVgT---------~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG-~LwIgT~~gG  150 (626)
                      ..|++|.+|++|+..         ++.|+++|+.++..     ....... .....+.. ..+..+.+| .||++...++
T Consensus        21 EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~-----~~~~~~~-~~~~~g~P-~Gl~~~~dg~~l~vad~~~~   93 (314)
T d1pjxa_          21 EGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK-----TVICKPE-VNGYGGIP-AGCQCDRDANQLFVADMRLG   93 (314)
T ss_dssp             EEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE-----EEEECCE-ETTEECCE-EEEEECSSSSEEEEEETTTE
T ss_pred             eEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcE-----EEEECCc-cccCCCcc-eeEEEeCCCCEEEEEECCCe
Confidence            467889999999975         24599999987631     2211110 00000111 234445555 6889887789


Q ss_pred             EEEEeCCCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcC----------------CCeEEEEeCC
Q 006913          151 LFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT----------------QGELYSLSAH  214 (626)
Q Consensus       151 L~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~----------------~GgL~~ld~~  214 (626)
                      +.+++++|........     . ..+  ..+.   ....+.+|+ +|+||++..                .|.||+++++
T Consensus        94 i~~~~~~g~~~~~~~~-----~-~~g--~~~~---~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d  161 (314)
T d1pjxa_          94 LLVVQTDGTFEEIAKK-----D-SEG--RRMQ---GCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD  161 (314)
T ss_dssp             EEEEETTSCEEECCSB-----C-TTS--CBCB---CCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT
T ss_pred             EEEEeCCCcEEEEEec-----c-ccc--cccC---CCcEEEECC-CCCEEEecCccCcccccccceeccCCceEEEEeec
Confidence            9999998765432211     0 000  0000   012357786 899999853                3468999887


Q ss_pred             CCeEEEEEcCCCCCcceeeee--ecCC---eEEEEEcCCCEEEEEECC-CCcEEEEE---ecCCC-CCceeeEEEeeCCe
Q 006913          215 SPYFNWIQDLSSFDKAFTLTP--GNNG---YLYVTIPVRALVLALDTS-SGNILWHK---SVGPL-GSAEYAPVVDSNGW  284 (626)
Q Consensus       215 tg~~~w~~~~~s~~~v~sI~~--D~dG---~LwVGT~~gG~l~alD~~-tG~~~w~~---~~~~l-~~~~sspvvD~dG~  284 (626)
                      +..........   ....++.  +.++   .||++....+.++.++.. .|.+.+..   ..... ....-.+++|.+|+
T Consensus       162 g~~~~~~~~~~---~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn  238 (314)
T d1pjxa_         162 GQMIQVDTAFQ---FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN  238 (314)
T ss_dssp             SCEEEEEEEES---SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC
T ss_pred             CceeEeeCCcc---eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCc
Confidence            64333322211   1122333  3333   699987667788887643 44443321   11110 01234578899999


Q ss_pred             EEEEEc-CCeEEEEcCCC-CEEEEeeccCCCCccccCceEEEEEEecCC-cEEEE
Q 006913          285 ISVGSL-DGLLYSFSPSG-VLNKFSKSDTSDSVIQSSPYWFHLLGPSIG-LKAIL  336 (626)
Q Consensus       285 IWVGT~-~gGLy~~d~~g-~~~~~~~~~~~~~~ilssp~V~~Il~DsdG-~IwI~  336 (626)
                      |||+.. .+.|++|++++ .......        .+.....+++...++ .|||.
T Consensus       239 lyVa~~~~g~I~~~dp~~g~~~~~i~--------~p~~~~t~~afg~d~~~lyVt  285 (314)
T d1pjxa_         239 LLVANWGSSHIEVFGPDGGQPKMRIR--------CPFEKPSNLHFKPQTKTIFVT  285 (314)
T ss_dssp             EEEEEETTTEEEEECTTCBSCSEEEE--------CSSSCEEEEEECTTSSEEEEE
T ss_pred             EEEEEcCCCEEEEEeCCCCEEEEEEE--------CCCCCEEEEEEeCCCCEEEEE
Confidence            999985 45799999874 4332222        111223345556666 48763

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.84  E-value=1.1e-06  Score=88.72  Aligned_cols=198  Identities=14%  Similarity=0.153  Sum_probs=121.7

Q ss_pred             CeEEecCCeEEEEE--CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEc-----CCeEEEE
Q 006913           82 APVHGGTGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVK-----GRALFAF  154 (626)
Q Consensus        82 sp~iD~dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~-----~gGL~a~  154 (626)
                      .|+.|.+|+||+..  .+.|+++++++...    ..+.....      . ....+..+.+|+||++..     .++++.+
T Consensus        44 G~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~----~~~~~~~~------~-~p~gla~~~dG~l~va~~~~~~~~~~i~~~  112 (319)
T d2dg1a1          44 GLNFDRQGQLFLLDVFEGNIFKINPETKEI----KRPFVSHK------A-NPAAIKIHKDGRLFVCYLGDFKSTGGIFAA  112 (319)
T ss_dssp             EEEECTTSCEEEEETTTCEEEEECTTTCCE----EEEEECSS------S-SEEEEEECTTSCEEEEECTTSSSCCEEEEE
T ss_pred             eCEECCCCCEEEEECCCCEEEEEECCCCeE----EEEEeCCC------C-CeeEEEECCCCCEEEEecCCCccceeEEEE
Confidence            57778899999986  68899999987532    12222111      1 123455678999999853     3568888


Q ss_pred             eCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcC-------CCeEEEEeCCCCeEEEEEcCCC
Q 006913          155 MTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT-------QGELYSLSAHSPYFNWIQDLSS  226 (626)
Q Consensus       155 d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~-------~GgL~~ld~~tg~~~w~~~~~s  226 (626)
                      +.. +........        .   ..   .......++|. +|+||+++.       .+++++++++++.+.....  .
T Consensus       113 ~~~~~~~~~~~~~--------~---~~---~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~--~  175 (319)
T d2dg1a1         113 TENGDNLQDIIED--------L---ST---AYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ--N  175 (319)
T ss_dssp             CTTSCSCEEEECS--------S---SS---CCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE--E
T ss_pred             cCCCceeeeeccC--------C---Cc---ccCCcceeEEe-ccceeecccccccccCcceeEEEecccceeEEEee--c
Confidence            876 433322211        0   00   00112356786 999999875       3569999998865543221  1


Q ss_pred             CCcceeeeeecCC-eEEEEEcCCCEEEEEECC-CCcEEEEE------ecCCCCCceeeEEEeeCCeEEEEEc-CCeEEEE
Q 006913          227 FDKAFTLTPGNNG-YLYVTIPVRALVLALDTS-SGNILWHK------SVGPLGSAEYAPVVDSNGWISVGSL-DGLLYSF  297 (626)
Q Consensus       227 ~~~v~sI~~D~dG-~LwVGT~~gG~l~alD~~-tG~~~w~~------~~~~l~~~~sspvvD~dG~IWVGT~-~gGLy~~  297 (626)
                      ......++.+.|| .||++....+.++.++.. .+......      .... ....-.+++|.+|+|||+.. ++.|.+|
T Consensus       176 ~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~-~~~PdGl~vD~~G~l~Va~~~~g~V~~~  254 (319)
T d2dg1a1         176 ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG-HEGPDSCCIDSDDNLYVAMYGQGRVLVF  254 (319)
T ss_dssp             ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS-SSEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred             cceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCC-ccceeeeeEcCCCCEEEEEcCCCEEEEE
Confidence            1223456777777 599997666788888643 23222111      1111 01234578999999999985 5689999


Q ss_pred             cCCCCEEEEee
Q 006913          298 SPSGVLNKFSK  308 (626)
Q Consensus       298 d~~g~~~~~~~  308 (626)
                      +++|+.+....
T Consensus       255 ~p~G~~l~~i~  265 (319)
T d2dg1a1         255 NKRGYPIGQIL  265 (319)
T ss_dssp             CTTSCEEEEEE
T ss_pred             CCCCcEEEEEe
Confidence            99998766443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.65  E-value=3.7e-06  Score=83.71  Aligned_cols=230  Identities=12%  Similarity=0.060  Sum_probs=129.0

Q ss_pred             eeeeEEeeCCEEEEEe--CCcEEEEcCCCCEEEEEeCCCCCCcccCeEEecCCeEEEEE--CCeEEEEECCCCcccccee
Q 006913           39 LSKPLIGEDGKIYACS--EKTLFAFESNGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA--ENRVLKVDLLKIGTSESAT  114 (626)
Q Consensus        39 ~Sspvid~dG~IwIgS--dggL~a~d~~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT--~ggL~~id~~~~~~~~~~~  114 (626)
                      ...++++.||+||++.  .+.|++++++|..........   ....+.++.+|++|++.  ++.+..++.....-   ..
T Consensus        30 ~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~---~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~---~~  103 (302)
T d2p4oa1          30 LENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEG---KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG---TV  103 (302)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSS---EEEEEEECTTSCEEEEEECTTSCEEEEEECTTS---CE
T ss_pred             cCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCC---CcceEEEcCCCCeEEEecCCceEEEEEeccccc---ce
Confidence            4578899999999986  567999999887654444332   34467788999999986  45666665433210   01


Q ss_pred             EEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEc-CCeEEEEeCCCcEE--EEECCcccccccccccccCCCCCccccceE
Q 006913          115 QVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVK-GRALFAFMTHGQLL--WSAGPVLDQLGYRQGCTKTDVDCYFTSVPV  191 (626)
Q Consensus       115 ~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~-~gGL~a~d~~G~~~--w~~~~~~~~~~~~~~~~~~l~~~~i~sspv  191 (626)
                      ......     ........+..+.+|++|++.. .+.++.+++.+...  |.......    ..   ...........+.
T Consensus       104 ~~~~~~-----~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~ngi~  171 (302)
T d2p4oa1         104 ETLLTL-----PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLA----RS---NSESVFPAANGLK  171 (302)
T ss_dssp             EEEEEC-----TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGS----CS---STTCCSCSEEEEE
T ss_pred             eecccc-----CCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccc----ee---eccCccccccccc
Confidence            111111     1122345566788999999865 46788999763332  22211000    00   0000000011123


Q ss_pred             EEcCCCeEEEEc-CCCeEEEEeCCCCeEEEEE-cCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecC-
Q 006913          192 IDQCEGSIYISN-TQGELYSLSAHSPYFNWIQ-DLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVG-  268 (626)
Q Consensus       192 iD~~dG~LwIGT-~~GgL~~ld~~tg~~~w~~-~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~-  268 (626)
                      .+  ++.+|++. ..+.|++++.......... ........-.++.|.+|+||++...++.+..+++ +|+........ 
T Consensus       172 ~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p-~G~~~~~~~~~~  248 (302)
T d2p4oa1         172 RF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAP-DRSTTIIAQAEQ  248 (302)
T ss_dssp             EE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECT-TCCEEEEECGGG
T ss_pred             cc--CCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECC-CCCEEEEEecCC
Confidence            45  56777654 4677888877654221100 0000112345788999999999876778989985 46554333222 


Q ss_pred             CCCCceeeEEEee----CCeEEEEEc
Q 006913          269 PLGSAEYAPVVDS----NGWISVGSL  290 (626)
Q Consensus       269 ~l~~~~sspvvD~----dG~IWVGT~  290 (626)
                      +. ....+.+++.    .+.|||+|.
T Consensus       249 ~~-~~pt~vafg~~~~D~~~Lyvtt~  273 (302)
T d2p4oa1         249 GV-IGSTAVAFGQTEGDCTAIYVVTN  273 (302)
T ss_dssp             TC-TTEEEEEECCSTTTTTEEEEEEC
T ss_pred             CC-CCceEEEEcCCCCCCCEEEEECC
Confidence            11 1234456632    246999885

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.60  E-value=6.3e-06  Score=90.30  Aligned_cols=169  Identities=18%  Similarity=0.267  Sum_probs=109.0

Q ss_pred             EEEcCCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeC
Q 006913          135 VSTSSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSA  213 (626)
Q Consensus       135 ~~d~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~  213 (626)
                      ++..+|.||+++.++.|+++|+. |+++|++...... ..+.    .  .....+.+.+.  ++.|++++.++.|+++|.
T Consensus        64 Piv~~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~-~~~~----~--~~~~~rg~a~~--~~~i~~~t~~~~l~alda  134 (582)
T d1flga_          64 AIVSDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPD-DIRP----C--CDVVNRGAAIY--GDKVFFGTLDASVVALNK  134 (582)
T ss_dssp             CEEETTEEEEEETTTEEEEEESSSCCEEEEEECCCCT-TCCC----S--SCSCCCCCEEE--TTEEEEEETTTEEEEEES
T ss_pred             CEEECCEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCC-cccc----c--cccccCCceEe--CCceEEecCCCeEEEecc
Confidence            44568999999999999999985 9999987331110 0000    0  01112345665  789999999999999999


Q ss_pred             CCCeEEEEEcCCC------CCcceeeeeec--CCeEEEEEc------CCCEEEEEECCCCcEEEEEecCCC---------
Q 006913          214 HSPYFNWIQDLSS------FDKAFTLTPGN--NGYLYVTIP------VRALVLALDTSSGNILWHKSVGPL---------  270 (626)
Q Consensus       214 ~tg~~~w~~~~~s------~~~v~sI~~D~--dG~LwVGT~------~gG~l~alD~~tG~~~w~~~~~~l---------  270 (626)
                      ++|+..|......      ......+..+.  .+.+.+...      ..+.++++|..||+.+|.+...+.         
T Consensus       135 ~tG~~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d  214 (582)
T d1flga_         135 NTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKD  214 (582)
T ss_dssp             SSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEE
T ss_pred             cccceeeeecccCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCccccccccc
Confidence            9999999865431      11111222221  123333321      235799999999999998643210         


Q ss_pred             ------------------------------CCceeeEEEe-eCCeEEEEEc------------------------CCeEE
Q 006913          271 ------------------------------GSAEYAPVVD-SNGWISVGSL------------------------DGLLY  295 (626)
Q Consensus       271 ------------------------------~~~~sspvvD-~dG~IWVGT~------------------------~gGLy  295 (626)
                                                    +.+...+..| ..|.+|++|.                        ...|.
T Consensus       215 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~Svv  294 (582)
T d1flga_         215 STVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQV  294 (582)
T ss_dssp             EEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEE
T ss_pred             cccccccccccCCCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCcccccccceeE
Confidence                                          1123446666 4588999882                        24589


Q ss_pred             EEcCC-CCEEEEeeccCC
Q 006913          296 SFSPS-GVLNKFSKSDTS  312 (626)
Q Consensus       296 ~~d~~-g~~~~~~~~~~~  312 (626)
                      ++|.+ |+.+|+++....
T Consensus       295 Ald~~tG~~~W~~q~~~~  312 (582)
T d1flga_         295 GVDPSSGEVKWFYQHTPN  312 (582)
T ss_dssp             EECTTTCCEEEEEESSTT
T ss_pred             Eecccchhhhhccccccc
Confidence            99975 999998775443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.44  E-value=3.9e-05  Score=75.97  Aligned_cols=196  Identities=11%  Similarity=0.068  Sum_probs=119.4

Q ss_pred             cCeEEecCCeEEEEE--CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcC-CeEEEEeC-
Q 006913           81 TAPVHGGTGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKG-RALFAFMT-  156 (626)
Q Consensus        81 ~sp~iD~dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~-gGL~a~d~-  156 (626)
                      ..+.++.+|+||+..  ++.|+++++.+..      ......       ......+..+.+|++|++... +.+..++. 
T Consensus        31 e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~------~~~~~~-------~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~   97 (302)
T d2p4oa1          31 ENLASAPDGTIFVTNHEVGEIVSITPDGNQ------QIHATV-------EGKVSGLAFTSNGDLVATGWNADSIPVVSLV   97 (302)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTTCCE------EEEEEC-------SSEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred             CCEEECCCCCEEEEeCCCCEEEEEeCCCCE------EEEEcC-------CCCcceEEEcCCCCeEEEecCCceEEEEEec
Confidence            356788999999986  6789999988742      222211       123445566889999998754 44555553 


Q ss_pred             --CCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcC-CCeEEEEeCCCCeEEEEEcCC--C-----
Q 006913          157 --HGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT-QGELYSLSAHSPYFNWIQDLS--S-----  226 (626)
Q Consensus       157 --~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~-~GgL~~ld~~tg~~~w~~~~~--s-----  226 (626)
                        .+...+....     .          .......+..+. +|++|++.. .+.++.++.+++.........  .     
T Consensus        98 ~~~~~~~~~~~~-----~----------~~~~~n~i~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  161 (302)
T d2p4oa1          98 KSDGTVETLLTL-----P----------DAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSE  161 (302)
T ss_dssp             CTTSCEEEEEEC-----T----------TCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTT
T ss_pred             ccccceeecccc-----C----------CccccceeEEcc-CCCEEeeccccccceeeeccCCcceeEecCCccceeecc
Confidence              2444332200     0          011123356675 899999864 678999999987654332211  0     


Q ss_pred             --CCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEE--EecCCCCCceeeEEEeeCCeEEEEEc-CCeEEEEcCCC
Q 006913          227 --FDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWH--KSVGPLGSAEYAPVVDSNGWISVGSL-DGLLYSFSPSG  301 (626)
Q Consensus       227 --~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~--~~~~~l~~~~sspvvD~dG~IWVGT~-~gGLy~~d~~g  301 (626)
                        ......+..+ ++.+|++....+.++.++.........  ....  ......+++|.+|+||++.. ++.|.+++++|
T Consensus       162 ~~~~~~ngi~~~-~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G  238 (302)
T d2p4oa1         162 SVFPAANGLKRF-GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR  238 (302)
T ss_dssp             CCSCSEEEEEEE-TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred             Cccccccccccc-CCceeeecCCCCeEEeccccccccccccccccC--CCCCcceEECCCCCEEEEEcCCCcEEEECCCC
Confidence              1112334444 568888877778888887554322110  0000  01123578999999999974 56799999998


Q ss_pred             CEEEEee
Q 006913          302 VLNKFSK  308 (626)
Q Consensus       302 ~~~~~~~  308 (626)
                      +......
T Consensus       239 ~~~~~~~  245 (302)
T d2p4oa1         239 STTIIAQ  245 (302)
T ss_dssp             CEEEEEC
T ss_pred             CEEEEEe
Confidence            8765543

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=0.011  Score=57.48  Aligned_cols=223  Identities=13%  Similarity=0.030  Sum_probs=124.4

Q ss_pred             eeEEeeCCEEE-EEe-CCcEEEEcC-CC--CEEEEEeCCCCCCcccCeEEecCCeEEEE-E-CCeEEEEECCCCccccce
Q 006913           41 KPLIGEDGKIY-ACS-EKTLFAFES-NG--TIAWSLDLDFTCNIGTAPVHGGTGEVYIV-A-ENRVLKVDLLKIGTSESA  113 (626)
Q Consensus        41 spvid~dG~Iw-IgS-dggL~a~d~-~G--~~~W~~~~~~~~~i~~sp~iD~dG~IwVg-T-~ggL~~id~~~~~~~~~~  113 (626)
                      +.....+|... .|+ ++.|..+|. ..  ..........  ..+.......++.+.+. + ++.+..++..++..    
T Consensus       102 ~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~----  175 (337)
T d1gxra_         102 SCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSA--PACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL----  175 (337)
T ss_dssp             EEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE----
T ss_pred             EEEEcCCCCEEEEeeccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccc----
Confidence            33444566544 455 566777775 22  2222222111  22333445566665554 4 67888888877531    


Q ss_pred             eEEEecCCCCCCCCCCeeEEEEE-EcCCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceE
Q 006913          114 TQVFYGTGSGKGGTGAIAGIAVS-TSSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPV  191 (626)
Q Consensus       114 ~~~~~~~~~~~~~~~~~I~s~~~-d~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspv  191 (626)
                       .....     .. ...+..+.. ..+..+.+++.++.+..+|.. ++.+..+..       .         ..+ .++.
T Consensus       176 -~~~~~-----~~-~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~-------~---------~~i-~~l~  231 (337)
T d1gxra_         176 -VRQFQ-----GH-TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF-------T---------SQI-FSLG  231 (337)
T ss_dssp             -EEEEC-----CC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-------S---------SCE-EEEE
T ss_pred             -ccccc-----cc-ccccccccccccccccccccccccccccccccceeeccccc-------c---------cce-EEEE
Confidence             11111     11 123333333 344567778888888899974 766544310       0         111 2344


Q ss_pred             EEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCC
Q 006913          192 IDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLG  271 (626)
Q Consensus       192 iD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~  271 (626)
                      ..+.+..|.+|+.++.+..+|.++++......  ....+.++....+|.+.+....++.+..+|..+++.+......   
T Consensus       232 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~---  306 (337)
T d1gxra_         232 YCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL--HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---  306 (337)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTSSCEEEECC--CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS---
T ss_pred             Ecccccccceeccccccccccccccccccccc--cccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCC---
Confidence            44424567778888999999998876543221  1234566666677765544434578888999999887665433   


Q ss_pred             CceeeEEEeeCCe-EEEEEcCCeEEEEc
Q 006913          272 SAEYAPVVDSNGW-ISVGSLDGLLYSFS  298 (626)
Q Consensus       272 ~~~sspvvD~dG~-IWVGT~~gGLy~~d  298 (626)
                      ..+.++...++|. |..|+.++.|..+|
T Consensus       307 ~~v~~~~~s~d~~~l~t~s~D~~I~vWd  334 (337)
T d1gxra_         307 SSVLSCDISVDDKYIVTGSGDKKATVYE  334 (337)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             CCEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            1244566666664 55667776666654

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.84  E-value=0.011  Score=55.97  Aligned_cols=234  Identities=11%  Similarity=0.095  Sum_probs=124.8

Q ss_pred             eeeeEEeeCCEEEE-Ee-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE-CCeEEEEECCCCcccccee
Q 006913           39 LSKPLIGEDGKIYA-CS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSESAT  114 (626)
Q Consensus        39 ~Sspvid~dG~IwI-gS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~  114 (626)
                      ..+.....+|.+.+ |+ ++.+..+|. +|+......... ...+.++....+|.++.+. ++.+..++......... .
T Consensus        15 V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h-~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~~~-~   92 (299)
T d1nr0a2          15 ITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVH-ATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSS-K   92 (299)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSC-SSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTT-S
T ss_pred             cEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCC-CCcEEEEEeeccceeecccceeeEEEeccCCcccccc-c
Confidence            33445556676544 55 567888887 777543221111 1234456667788888776 78888887654321000 0


Q ss_pred             EEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccceEEEc
Q 006913          115 QVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQ  194 (626)
Q Consensus       115 ~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~  194 (626)
                      ....      .. ...+.......+|.+.++...+.+..++.. +..-..      ..+           . .......+
T Consensus        93 ~~~~------~~-~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~-~~~~~~------~~~-----------~-~~~~~~s~  146 (299)
T d1nr0a2          93 AVAN------KL-SSQPLGLAVSADGDIAVAACYKHIAIYSHG-KLTEVP------ISY-----------N-SSCVALSN  146 (299)
T ss_dssp             CCEE------EC-SSCEEEEEECTTSSCEEEEESSEEEEEETT-EEEEEE------CSS-----------C-EEEEEECT
T ss_pred             cccc------cc-cccccccccccccccccccccccccccccc-cccccc------ccc-----------c-cccccccc
Confidence            0000      00 112223334456666666666677777643 111111      000           0 12233333


Q ss_pred             CCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEe-cCCCCCc
Q 006913          195 CEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKS-VGPLGSA  273 (626)
Q Consensus       195 ~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~-~~~l~~~  273 (626)
                      .+..|.+|+.++.|..+|.++++............+.++....++...+.....+.+..+|..++....... ...-...
T Consensus       147 ~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~  226 (299)
T d1nr0a2         147 DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAK  226 (299)
T ss_dssp             TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            245577888899999999888765443222112345667777777544433345677788876665442211 1110123


Q ss_pred             eeeEEEeeCC-eEEEEEcCCeEEEEcCC
Q 006913          274 EYAPVVDSNG-WISVGSLDGLLYSFSPS  300 (626)
Q Consensus       274 ~sspvvD~dG-~IWVGT~~gGLy~~d~~  300 (626)
                      +.++...++| .|..|+.++.|+.+|..
T Consensus       227 v~~l~~s~~~~~l~sgs~dg~i~iwd~~  254 (299)
T d1nr0a2         227 VACVSWSPDNVRLATGSLDNSVIVWNMN  254 (299)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             cccccccccccceEEEcCCCEEEEEECC
Confidence            4456666666 46678888999999854

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.58  E-value=0.04  Score=53.35  Aligned_cols=233  Identities=8%  Similarity=-0.014  Sum_probs=124.5

Q ss_pred             eeeeEEeeCCEEEE-Ee-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE-C---CeEEEEECCCCcccc
Q 006913           39 LSKPLIGEDGKIYA-CS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA-E---NRVLKVDLLKIGTSE  111 (626)
Q Consensus        39 ~Sspvid~dG~IwI-gS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT-~---ggL~~id~~~~~~~~  111 (626)
                      .......++|++.+ |+ ++.+..+|. ++.......+......+.++....++++.+.. +   .-+..++.+++..  
T Consensus        61 v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~--  138 (311)
T d1nr0a1          61 TTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS--  138 (311)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB--
T ss_pred             EEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccccccccc--
Confidence            34444446776554 44 667888886 44322222111111223455566677755543 2   2255556655421  


Q ss_pred             ceeEEEecCCCCCCCCCCeeEEEEEEcCCe--EEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCcccc
Q 006913          112 SATQVFYGTGSGKGGTGAIAGIAVSTSSSS--VYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTS  188 (626)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~--LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~s  188 (626)
                         ...+     ... ...|..+....++.  +..|+.++-|..+|.. ++.......            +   ... ..
T Consensus       139 ---~~~l-----~~h-~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~------------~---~~~-i~  193 (311)
T d1nr0a1         139 ---NGNL-----TGQ-ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE------------H---TKF-VH  193 (311)
T ss_dssp             ---CBCC-----CCC-SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC------------C---SSC-EE
T ss_pred             ---cccc-----ccc-ccccccccccccceeeeccccccccccccccccccccccccc------------c---ccc-cc
Confidence               0000     111 12344444444443  4446677778888975 655444310            0   011 23


Q ss_pred             ceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCC------CCcceeeeeecCCe-EEEEEcCCCEEEEEECCCCcE
Q 006913          189 VPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSS------FDKAFTLTPGNNGY-LYVTIPVRALVLALDTSSGNI  261 (626)
Q Consensus       189 spviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s------~~~v~sI~~D~dG~-LwVGT~~gG~l~alD~~tG~~  261 (626)
                      ++...+.+..|..++.++.+..+|..++..........      ...+.++....+|. |..|+ .++.+...|..+++.
T Consensus       194 ~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs-~Dg~v~iwd~~t~~~  272 (311)
T d1nr0a1         194 SVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS-ADKTIKIWNVATLKV  272 (311)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTTEE
T ss_pred             ccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEe-CCCeEEEEECCCCcE
Confidence            34555424456667778889999998877665533221      12456666666665 44444 457888899999987


Q ss_pred             EEEEecCC-CCCceeeEEEeeCCeEEEEEcCCeEEEEcCC
Q 006913          262 LWHKSVGP-LGSAEYAPVVDSNGWISVGSLDGLLYSFSPS  300 (626)
Q Consensus       262 ~w~~~~~~-l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~  300 (626)
                      +....... ......++..+ ++.|+.++.+|.|..+|++
T Consensus       273 ~~~l~~~~~~~~~~~~~~~~-~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         273 EKTIPVGTRIEDQQLGIIWT-KQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEEECCSSGGGCEEEEEEC-SSCEEEEETTCCEEEEETT
T ss_pred             EEEEECCCCccceEEEEEec-CCEEEEEECCCEEEEEeCC
Confidence            76554331 11112233334 5678888888888888764

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.42  E-value=0.053  Score=51.03  Aligned_cols=59  Identities=15%  Similarity=0.235  Sum_probs=41.8

Q ss_pred             EEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCe-EEEEE--CCeEEEEECCCCc
Q 006913           50 IYACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGE-VYIVA--ENRVLKVDLLKIG  108 (626)
Q Consensus        50 IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~-IwVgT--~ggL~~id~~~~~  108 (626)
                      ++.++ ++.|..+|. +++.+..+..+.......++.++.+|+ +|++.  ++.|..+|..+++
T Consensus         4 ~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~   67 (337)
T d1pbyb_           4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE   67 (337)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC
T ss_pred             EEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCc
Confidence            44555 678999998 788777776543222345678888887 56654  6789999998874

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.065  Score=51.71  Aligned_cols=265  Identities=12%  Similarity=-0.047  Sum_probs=140.8

Q ss_pred             eeeeEEeeCCEEEE-EeCCcEEEEcC-CCC---EEEEEeCCCCCCcccCeEEecCCeEEE-EE-CCeEEEEECCCCcccc
Q 006913           39 LSKPLIGEDGKIYA-CSEKTLFAFES-NGT---IAWSLDLDFTCNIGTAPVHGGTGEVYI-VA-ENRVLKVDLLKIGTSE  111 (626)
Q Consensus        39 ~Sspvid~dG~IwI-gSdggL~a~d~-~G~---~~W~~~~~~~~~i~~sp~iD~dG~IwV-gT-~ggL~~id~~~~~~~~  111 (626)
                      .....+..+|...+ |+++.+..+|. ++.   .............+.++....+|+..+ ++ ++.|..+|......  
T Consensus        54 V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~--  131 (337)
T d1gxra_          54 VCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP--  131 (337)
T ss_dssp             CCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC----
T ss_pred             EEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccc--
Confidence            34455556675444 55666777775 321   111111111112344555666777554 44 67788888764321  


Q ss_pred             ceeEEEecCCCCCCCCCCeeEEEEEEcCC-eEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccc
Q 006913          112 SATQVFYGTGSGKGGTGAIAGIAVSTSSS-SVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSV  189 (626)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~I~s~~~d~dG-~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~ss  189 (626)
                       ........     . ...+.......++ .+..++.++.+..++.. ++.......            .   ...+ .+
T Consensus       132 -~~~~~~~~-----~-~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~------------~---~~~v-~~  188 (337)
T d1gxra_         132 -RIKAELTS-----S-APACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG------------H---TDGA-SC  188 (337)
T ss_dssp             -EEEEEEEC-----S-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC------------C---SSCE-EE
T ss_pred             -cccccccc-----c-ccccccccccccccccccccccccccccccccccccccccc------------c---cccc-cc
Confidence             01111111     1 1223333334444 45556777788888875 554433200            0   0111 23


Q ss_pred             eEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCe-EEEEEcCCCEEEEEECCCCcEEEEEecC
Q 006913          190 PVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGY-LYVTIPVRALVLALDTSSGNILWHKSVG  268 (626)
Q Consensus       190 pviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~-LwVGT~~gG~l~alD~~tG~~~w~~~~~  268 (626)
                      +.....+..+.+|+.++.+..+|.++++........  ..+.++....++. |.+|+ .++.+..+|..++.........
T Consensus       189 l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~--~~i~~l~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~  265 (337)
T d1gxra_         189 IDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT--SQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNKPDKYQLHLHE  265 (337)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS--SCEEEEEECTTSSEEEEEE-TTSCEEEEETTSSCEEEECCCS
T ss_pred             ccccccccccccccccccccccccccceeecccccc--cceEEEEEcccccccceec-cccccccccccccccccccccc
Confidence            334332556888888899999999988766544322  2456666666664 55555 4577888898777765332221


Q ss_pred             CCCCceeeEEEeeCCe-EEEEEcCCeEEEEcCC-CCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEEeeecCee
Q 006913          269 PLGSAEYAPVVDSNGW-ISVGSLDGLLYSFSPS-GVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLMVVGQF  344 (626)
Q Consensus       269 ~l~~~~sspvvD~dG~-IWVGT~~gGLy~~d~~-g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~t~~Ggl  344 (626)
                         ..+.++...++|. |..|+.++.|..+|.. ++.......         ...|.++....+|... .+++..|.+
T Consensus       266 ---~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~---------~~~v~~~~~s~d~~~l-~t~s~D~~I  330 (337)
T d1gxra_         266 ---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---------SSSVLSCDISVDDKYI-VTGSGDKKA  330 (337)
T ss_dssp             ---SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC---------SSCEEEEEECTTSCEE-EEEETTSCE
T ss_pred             ---cccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccC---------CCCEEEEEEeCCCCEE-EEEeCCCeE
Confidence               2345566666664 5567778889999864 665543331         1224455555666543 444433433

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.30  E-value=0.073  Score=49.96  Aligned_cols=269  Identities=8%  Similarity=-0.086  Sum_probs=138.2

Q ss_pred             eeEEeeCCEEEE-Ee-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEE-EE-CCeEEEEECCCCccccceeE
Q 006913           41 KPLIGEDGKIYA-CS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYI-VA-ENRVLKVDLLKIGTSESATQ  115 (626)
Q Consensus        41 spvid~dG~IwI-gS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwV-gT-~ggL~~id~~~~~~~~~~~~  115 (626)
                      ......+|.+.+ |+ ++.+..+|. +++....+....  ..+.++....+|.+.+ ++ ++.+...+......... ..
T Consensus        60 ~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~--~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~-~~  136 (340)
T d1tbga_          60 AMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRS--SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVR-VS  136 (340)
T ss_dssp             EEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSC--SCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCC-EE
T ss_pred             EEEECCCCCEEEEEECCCceeeeecccceeEEEEeccc--ccEEeeEeeccceeeeeecccceeecccccccccccc-cc
Confidence            444546676554 55 567888897 777665554322  2344555666776544 44 56677666544321000 00


Q ss_pred             EEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccceEEEcC
Q 006913          116 VFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQC  195 (626)
Q Consensus       116 ~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~  195 (626)
                      ....      .............+..+.....+..................     .      .   ...+ ........
T Consensus       137 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~------~---~~~~-~~~~~~~~  195 (340)
T d1tbga_         137 RELA------GHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT-----G------H---TGDV-MSLSLAPD  195 (340)
T ss_dssp             EEEC------CCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEE-----C------C---SSCE-EEEEECTT
T ss_pred             eecc------ccccccccccccccccccccccccccccccccccccccccc-----c------c---ceeE-eeeccccc
Confidence            0110      00112223333445555555555555555543222111100     0      0   0011 11222221


Q ss_pred             CCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeE-EEEEcCCCEEEEEECCCCcEEEEEecCCCCCce
Q 006913          196 EGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYL-YVTIPVRALVLALDTSSGNILWHKSVGPLGSAE  274 (626)
Q Consensus       196 dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~L-wVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~  274 (626)
                      ...+..|..++.+..+|.++++....... ....+.+++...+|.+ .+|+ .++.+..+|..................+
T Consensus       196 ~~~~~~~~~d~~v~i~d~~~~~~~~~~~~-h~~~i~~v~~~p~~~~l~s~s-~d~~i~~~~~~~~~~~~~~~~~~~~~~i  273 (340)
T d1tbga_         196 TRLFVSGACDASAKLWDVREGMCRQTFTG-HESDINAICFFPNGNAFATGS-DDATCRLFDLRADQELMTYSHDNIICGI  273 (340)
T ss_dssp             SSEEEEEETTTEEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred             cceeEEeecCceEEEEECCCCcEEEEEeC-CCCCeEEEEECCCCCEEEEEe-CCCeEEEEeecccccccccccccccCce
Confidence            34455677788899999998877654332 1234566666667754 4445 4567778887777665444332211224


Q ss_pred             eeEEEeeCC-eEEEEEcCCeEEEEcCC-CCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEEeeecCee
Q 006913          275 YAPVVDSNG-WISVGSLDGLLYSFSPS-GVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLMVVGQF  344 (626)
Q Consensus       275 sspvvD~dG-~IWVGT~~gGLy~~d~~-g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~t~~Ggl  344 (626)
                      ..+...++| .|.+|+.++.|+.+|.. ++......   .     ....|.+|....+|.+. .+++..|.+
T Consensus       274 ~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~---~-----H~~~V~~l~~s~d~~~l-~s~s~Dg~v  336 (340)
T d1tbga_         274 TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA---G-----HDNRVSCLGVTDDGMAV-ATGSWDSFL  336 (340)
T ss_dssp             EEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEEC---C-----CSSCEEEEEECTTSSCE-EEEETTSCE
T ss_pred             EEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEc---C-----CCCCEEEEEEeCCCCEE-EEEccCCEE
Confidence            456666565 57778888999999964 66544332   1     12235566666666643 444444433

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.11  E-value=0.11  Score=48.56  Aligned_cols=247  Identities=9%  Similarity=0.028  Sum_probs=123.8

Q ss_pred             CceeeeeEEeeCCEEEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE-CCeEEEEECCCCccccc
Q 006913           36 AFRLSKPLIGEDGKIYACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSES  112 (626)
Q Consensus        36 ~~~~Sspvid~dG~IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~  112 (626)
                      ..+.+.... +++.|..|+ ++.+..+|. +++.+..+....  ..+.++....++.|..+. ++.|...+.....    
T Consensus        13 ~~vitc~~~-~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~--~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~----   85 (355)
T d1nexb2          13 TSVITCLQF-EDNYVITGADDKMIRVYDSINKKFLLQLSGHD--GGVWALKYAHGGILVSGSTDRTVRVWDIKKGC----   85 (355)
T ss_dssp             SSCEEEEEE-ETTEEEEEETTTEEEEEETTTTEEEEEEECCS--SCEEEEEEETTTEEEEEETTCCEEEEETTTTE----
T ss_pred             CCcEEEEEE-CCCEEEEEeCCCeEEEEECCCCcEEEEEECCC--CCEEEEEEcCCCEEEEEecccccccccccccc----
Confidence            334443333 344555566 567888897 787766554321  234455555666666666 7778888876642    


Q ss_pred             eeEEEecCCCCCCCCCCeeEEEEEEcCCe-EEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCC------CC
Q 006913          113 ATQVFYGTGSGKGGTGAIAGIAVSTSSSS-VYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDV------DC  184 (626)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~I~s~~~d~dG~-LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~------~~  184 (626)
                       ........    .............++. +..++.++-+..++.. +......... ..............      ..
T Consensus        86 -~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  159 (355)
T d1nexb2          86 -CTHVFEGH----NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE-HDYPLVFHTPEENPYFVGVLRG  159 (355)
T ss_dssp             -EEEEECCC----SSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC------------CCCEEESCTTTCTTEEEEEEC
T ss_pred             -cccccccc----cccccccccccccccceeeeecCCCcEEEEEccCCceecccccc-ceeccceeccccccceeeeeee
Confidence             11111110    1111112222233333 5556666777777754 3222111000 00000000000000      00


Q ss_pred             ccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCC-eEEEEEcCCCEEEEEECCCCcEEE
Q 006913          185 YFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNG-YLYVTIPVRALVLALDTSSGNILW  263 (626)
Q Consensus       185 ~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG-~LwVGT~~gG~l~alD~~tG~~~w  263 (626)
                      ...........++.+..+..++.+..+|.++++........ .....++....++ .+.+++ .++.+..+|..++....
T Consensus       160 ~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~  237 (355)
T d1nexb2         160 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH-TDRIYSTIYDHERKRCISAS-MDTTIRIWDLENGELMY  237 (355)
T ss_dssp             CSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEEETTTTEEEEEE-TTSCEEEEETTTCCEEE
T ss_pred             ccccccccccccceeeeecccceeeeeecccccceeeeecc-ccccccccccccceeeeccc-ccceEEeeecccccccc
Confidence            00000111111456777777888999999887766543321 1223444455555 566665 45678888988988876


Q ss_pred             EEecCCCCCceeeEEEeeCCeEEEEEcCCeEEEEcCC
Q 006913          264 HKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPS  300 (626)
Q Consensus       264 ~~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~  300 (626)
                      .....  ...+.++..+ +..|+.|+.++.|..+|..
T Consensus       238 ~~~~h--~~~v~~~~~~-~~~l~~~~~dg~i~iwd~~  271 (355)
T d1nexb2         238 TLQGH--TALVGLLRLS-DKFLVSAAADGSIRGWDAN  271 (355)
T ss_dssp             EECCC--SSCCCEEEEC-SSEEEEECTTSEEEEEETT
T ss_pred             ccccc--cccccccccc-cceeeeeeccccccccccc
Confidence            65432  1223445554 5688889999999999975

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.05  E-value=0.15  Score=48.98  Aligned_cols=233  Identities=11%  Similarity=0.013  Sum_probs=124.0

Q ss_pred             EeeCC-EEEEEeCCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEE-EE-CCeEEEEECCCCccccceeEEEec
Q 006913           44 IGEDG-KIYACSEKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYI-VA-ENRVLKVDLLKIGTSESATQVFYG  119 (626)
Q Consensus        44 id~dG-~IwIgSdggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwV-gT-~ggL~~id~~~~~~~~~~~~~~~~  119 (626)
                      .+.+| .|..++++.++.++. ++.....+. ... ..+.++....+|++.+ |. ++.|..+|..+....   ....+.
T Consensus        25 ~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~-~H~-~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~---~~~~~~   99 (311)
T d1nr0a1          25 NTPAGDKIQYCNGTSVYTVPVGSLTDTEIYT-EHS-HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI---LKTTIP   99 (311)
T ss_dssp             ECTTSSEEEEEETTEEEEEETTCSSCCEEEC-CCS-SCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC---EEEEEE
T ss_pred             EcCCCCEEEEEeCCEEEEEECCCCceeEEEc-CCC-CCEEEEEEeCCCCeEeccccCceEeeeeeeccccc---cccccc
Confidence            33455 444566677888887 554433232 211 2344555667887655 44 788888888765310   111111


Q ss_pred             CCCCCCCCCCeeEEEEEEcCCeEE-EEEcC--CeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcC
Q 006913          120 TGSGKGGTGAIAGIAVSTSSSSVY-INVKG--RALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQC  195 (626)
Q Consensus       120 ~~~~~~~~~~~I~s~~~d~dG~Lw-IgT~~--gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~  195 (626)
                           .. ...|..+....++.+. .++.+  .-+..++.+ ++.....       .     .+   ...+ .++...+ 
T Consensus       100 -----~~-~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l-------~-----~h---~~~v-~~v~~~~-  156 (311)
T d1nr0a1         100 -----VF-SGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNL-------T-----GQ---ARAM-NSVDFKP-  156 (311)
T ss_dssp             -----CS-SSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCC-------C-----CC---SSCE-EEEEECS-
T ss_pred             -----cc-cCccccccccccccccccccccccccccccccccccccccc-------c-----cc---cccc-ccccccc-
Confidence                 11 1234444444555544 34322  123444533 4332211       0     00   0111 2333443 


Q ss_pred             CCe--EEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCC---
Q 006913          196 EGS--IYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPL---  270 (626)
Q Consensus       196 dG~--LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l---  270 (626)
                      ++.  |..|+.++.|..+|.++++........ ...+.++....+|++.+.....+.+..+|..++.....+.....   
T Consensus       157 ~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~-~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~  235 (311)
T d1nr0a1         157 SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEH-TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV  235 (311)
T ss_dssp             SSSCEEEEEETTSCEEEEETTTBEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSC
T ss_pred             cceeeecccccccccccccccccccccccccc-cccccccccCccccccccccccccccccccccccccccccccccccc
Confidence            333  445777888999999987765543321 23456777777776555443456788889888887765433211   


Q ss_pred             --CCceeeEEEeeCC-eEEEEEcCCeEEEEcCC-CCEEE
Q 006913          271 --GSAEYAPVVDSNG-WISVGSLDGLLYSFSPS-GVLNK  305 (626)
Q Consensus       271 --~~~~sspvvD~dG-~IWVGT~~gGLy~~d~~-g~~~~  305 (626)
                        ...+.++...++| .|..|+.++.|+.+|.. ++...
T Consensus       236 ~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~  274 (311)
T d1nr0a1         236 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEK  274 (311)
T ss_dssp             SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             cccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence              1124456666555 56667788889999964 65544

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=97.01  E-value=0.095  Score=49.39  Aligned_cols=66  Identities=11%  Similarity=0.093  Sum_probs=44.6

Q ss_pred             eEEeeCCEEEE-Ee-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCe-EEEEE--CCeEEEEECCCCc
Q 006913           42 PLIGEDGKIYA-CS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGE-VYIVA--ENRVLKVDLLKIG  108 (626)
Q Consensus        42 pvid~dG~IwI-gS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~-IwVgT--~ggL~~id~~~~~  108 (626)
                      |+...+|..++ ++ ++.|..+|. +++++..+..+.. ....++.+..||+ +|++.  ++.|..+|..+++
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~-~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~   73 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK   73 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC-CSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCC-CCcceEEECCCCCEEEEEECCCCcEEEEeCccCe
Confidence            44556676666 44 678999998 8888766655422 1223566777876 56765  5789999998863

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=97.00  E-value=0.13  Score=47.45  Aligned_cols=241  Identities=12%  Similarity=0.098  Sum_probs=132.1

Q ss_pred             EEEEEe--CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCe-EEEEE--CCeEEEEECCCCccccceeEEEecCCC
Q 006913           49 KIYACS--EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGE-VYIVA--ENRVLKVDLLKIGTSESATQVFYGTGS  122 (626)
Q Consensus        49 ~IwIgS--dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~-IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~  122 (626)
                      .+||..  ++.|..+|. ++++...+..+.   ....+.++.+|+ ||++.  ++.|..+|..++..     ...+..  
T Consensus         3 ~~yV~~~~~~~v~v~D~~t~~~~~~i~~g~---~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~-----~~~~~~--   72 (301)
T d1l0qa2           3 FAYIANSESDNISVIDVTSNKVTATIPVGS---NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-----IATVPA--   72 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSS---SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-----EEEEEC--
T ss_pred             EEEEEECCCCEEEEEECCCCeEEEEEECCC---CceEEEEeCCCCEEEEEECCCCEEEEEECCCCce-----eeeeec--
Confidence            357754  567999997 888776666543   223566778887 67765  57899999987631     111111  


Q ss_pred             CCCCCCCeeEEEEEEcCC-eEEEEEcC-CeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeE
Q 006913          123 GKGGTGAIAGIAVSTSSS-SVYINVKG-RALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSI  199 (626)
Q Consensus       123 ~~~~~~~~I~s~~~d~dG-~LwIgT~~-gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~L  199 (626)
                         . ... ..+....++ .+++.... ..+..++.. ++.......       .        ..  .......+.+..+
T Consensus        73 ---~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--------~~--~~~~~~~~dg~~~  130 (301)
T d1l0qa2          73 ---G-SSP-QGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-------G--------KS--PLGLALSPDGKKL  130 (301)
T ss_dssp             ---S-SSE-EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-------S--------SS--EEEEEECTTSSEE
T ss_pred             ---c-ccc-cccccccccccccccccccceeeecccccceeeeeccc-------c--------cc--ceEEEeecCCCee
Confidence               0 112 233334444 46665544 445566764 655544310       0        00  1123344313445


Q ss_pred             EEEcC-CCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCC-eEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeE
Q 006913          200 YISNT-QGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNG-YLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAP  277 (626)
Q Consensus       200 wIGT~-~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG-~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~ssp  277 (626)
                      +++.. ++.+..++..++.........  ..+..+....++ .+|++..+...+...+.............   .....+
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  205 (301)
T d1l0qa2         131 YVTNNGDKTVSVINTVTKAVINTVSVG--RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE---AAPSGI  205 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECC--SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS---SEEEEE
T ss_pred             eeeeccccceeeeeccccceeeecccC--CCceEEEeeccccceeeecccccccccccccceeeeeccccc---CCccee
Confidence            54443 556778888887665543322  223444444444 68888765566766776565555443332   123345


Q ss_pred             EEeeCC-eEEEEEcC---CeEEEEcCC-CCEEEEeeccCCCCccccCceEEEEEEecCCc-EEE
Q 006913          278 VVDSNG-WISVGSLD---GLLYSFSPS-GVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGL-KAI  335 (626)
Q Consensus       278 vvD~dG-~IWVGT~~---gGLy~~d~~-g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~-IwI  335 (626)
                      .++.+| .+|++..+   +.|+.+|.. ++......         ....+..+....+|. ||+
T Consensus       206 ~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~---------~~~~~~~va~spdg~~l~v  260 (301)
T d1l0qa2         206 AVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP---------VGPDPAGIAVTPDGKKVYV  260 (301)
T ss_dssp             EECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE---------CCSSEEEEEECTTSSEEEE
T ss_pred             eccccccccccccccceeeeeeeeecCCCeEEEEEc---------CCCCEEEEEEeCCCCEEEE
Confidence            565554 56666543   468999975 55544333         122345677788886 553

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=96.64  E-value=0.25  Score=45.43  Aligned_cols=229  Identities=11%  Similarity=0.113  Sum_probs=124.3

Q ss_pred             eeeEEeeCCE-EEEEe--CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEE-EEE--CCeEEEEECCCCccccc
Q 006913           40 SKPLIGEDGK-IYACS--EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVY-IVA--ENRVLKVDLLKIGTSES  112 (626)
Q Consensus        40 Sspvid~dG~-IwIgS--dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~Iw-VgT--~ggL~~id~~~~~~~~~  112 (626)
                      ....+..+|+ ||++.  ++.+..+|. +++.+..+....   ....+..+.++..+ +..  ++.+..++..++..   
T Consensus        35 ~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  108 (301)
T d1l0qa2          35 MGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS---SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV---  108 (301)
T ss_dssp             EEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE---
T ss_pred             eEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc---cccccccccccccccccccccceeeeccccccee---
Confidence            3456667775 77765  567999998 777665554432   12345566677644 443  45677778776531   


Q ss_pred             eeEEEecCCCCCCCCCCeeEEEEEEcCCe-EEEEEc-CCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccc
Q 006913          113 ATQVFYGTGSGKGGTGAIAGIAVSTSSSS-VYINVK-GRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSV  189 (626)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~I~s~~~d~dG~-LwIgT~-~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~ss  189 (626)
                        ......       ...........+|. +++... +..+..++.. +........       .        ..  ...
T Consensus       109 --~~~~~~-------~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--------~~--~~~  162 (301)
T d1l0qa2         109 --AGTVKT-------GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-------G--------RS--PKG  162 (301)
T ss_dssp             --EEEEEC-------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-------C--------SS--EEE
T ss_pred             --eeeccc-------cccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc-------C--------CC--ceE
Confidence              111111       11122333344444 444443 3456666654 554433200       0        00  111


Q ss_pred             eEEEcCCCeEEEEcCC-CeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCC-eEEEEEcC--CCEEEEEECCCCcEEEEE
Q 006913          190 PVIDQCEGSIYISNTQ-GELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNG-YLYVTIPV--RALVLALDTSSGNILWHK  265 (626)
Q Consensus       190 pviD~~dG~LwIGT~~-GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG-~LwVGT~~--gG~l~alD~~tG~~~w~~  265 (626)
                      ......++.+|++..+ +.+...+..............  .+..++.+.+| .+|++..+  .+.+..+|..+++.....
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~  240 (301)
T d1l0qa2         163 IAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA--APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI  240 (301)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS--EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEE
T ss_pred             EEeeccccceeeecccccccccccccceeeeecccccC--CcceeeccccccccccccccceeeeeeeeecCCCeEEEEE
Confidence            2333325667877664 445555555555444333221  23344555555 56666532  257888999999887766


Q ss_pred             ecCCCCCceeeEEEeeCCe-EEEEE-cCCeEEEEcCC-CCEEE
Q 006913          266 SVGPLGSAEYAPVVDSNGW-ISVGS-LDGLLYSFSPS-GVLNK  305 (626)
Q Consensus       266 ~~~~l~~~~sspvvD~dG~-IWVGT-~~gGLy~~d~~-g~~~~  305 (626)
                      ..+.   ....+.++++|. |||+. .++.|..+|.. ++...
T Consensus       241 ~~~~---~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~  280 (301)
T d1l0qa2         241 PVGP---DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITA  280 (301)
T ss_dssp             ECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             cCCC---CEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEE
Confidence            5542   245577888875 88766 45678899964 65543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.59  E-value=0.093  Score=49.04  Aligned_cols=229  Identities=8%  Similarity=-0.006  Sum_probs=113.9

Q ss_pred             eeeeEEeeCCEEEEEe-CCcEEEEcCCCCEEEEEeCC--CCCCcccCeEEecCCeEEEEE-CCeEEEEECCCCcccccee
Q 006913           39 LSKPLIGEDGKIYACS-EKTLFAFESNGTIAWSLDLD--FTCNIGTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSESAT  114 (626)
Q Consensus        39 ~Sspvid~dG~IwIgS-dggL~a~d~~G~~~W~~~~~--~~~~i~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~  114 (626)
                      ........+|.+++++ ++.+..++..+.........  ........+....+|.+.+++ ++.+..++....      .
T Consensus        58 v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~------~  131 (299)
T d1nr0a2          58 ITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL------T  131 (299)
T ss_dssp             EEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEE------E
T ss_pred             EEEEEeeccceeecccceeeEEEeccCCccccccccccccccccccccccccccccccccccccccccccccc------c
Confidence            3445555678887765 66777777532110000000  000112233445677766655 777777775431      1


Q ss_pred             EEEecCCCCCCCCCCeeEEEEEEcC-CeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEE
Q 006913          115 QVFYGTGSGKGGTGAIAGIAVSTSS-SSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVI  192 (626)
Q Consensus       115 ~~~~~~~~~~~~~~~~I~s~~~d~d-G~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspvi  192 (626)
                      ....         ......+....+ ..|.+|+.++.+..+|.+ ++.....     ...      +   ...+ .++..
T Consensus       132 ~~~~---------~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~-----~~~------~---~~~i-~~~~~  187 (299)
T d1nr0a2         132 EVPI---------SYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVK-----TIV------H---PAEI-TSVAF  187 (299)
T ss_dssp             EEEC---------SSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEE-----EEE------C---SSCE-EEEEE
T ss_pred             cccc---------ccccccccccccccccccccccccccccccccccccccc-----ccc------c---cccc-ccccc
Confidence            1111         111222333334 456677888888888865 4432211     000      0   0111 33444


Q ss_pred             EcCCCeEEEEcCCCeEEEEeCCCCeEEEEE-cCCC-CCcceeeeeecCCe-EEEEEcCCCEEEEEECCCCcEEEEEecCC
Q 006913          193 DQCEGSIYISNTQGELYSLSAHSPYFNWIQ-DLSS-FDKAFTLTPGNNGY-LYVTIPVRALVLALDTSSGNILWHKSVGP  269 (626)
Q Consensus       193 D~~dG~LwIGT~~GgL~~ld~~tg~~~w~~-~~~s-~~~v~sI~~D~dG~-LwVGT~~gG~l~alD~~tG~~~w~~~~~~  269 (626)
                      .+.+..|..++.++.|..+|..++...... .... ...+.++....+|. |..|+ .++.+..+|..++..........
T Consensus       188 ~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs-~dg~i~iwd~~~~~~~~~~~~~~  266 (299)
T d1nr0a2         188 SNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGS-LDNSVIVWNMNKPSDHPIIIKGA  266 (299)
T ss_dssp             CTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTCTTSCCEEETTS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccceEEEc-CCCEEEEEECCCCCcceEEEecC
Confidence            442455677878888999988775443211 1111 23456666666775 44555 34677778876664322211111


Q ss_pred             -CCCceeeEEEeeCCeEEEEEcCCeEEEEc
Q 006913          270 -LGSAEYAPVVDSNGWISVGSLDGLLYSFS  298 (626)
Q Consensus       270 -l~~~~sspvvD~dG~IWVGT~~gGLy~~d  298 (626)
                       ....+......+++.|..|+.++.|..+|
T Consensus       267 ~~~~~v~~~~~~~~~~l~s~s~D~~i~iWd  296 (299)
T d1nr0a2         267 HAMSSVNSVIWLNETTIVSAGQDSNIKFWN  296 (299)
T ss_dssp             STTSCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred             CCCCcEEEEEECCCCEEEEEeCCCEEEEEe
Confidence             11123333333456777777777666655

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.53  E-value=0.28  Score=44.66  Aligned_cols=264  Identities=10%  Similarity=0.013  Sum_probs=131.1

Q ss_pred             eeeEEeeCCEEEE-Ee-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE--CCeEEEEECCCCcccccee
Q 006913           40 SKPLIGEDGKIYA-CS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA--ENRVLKVDLLKIGTSESAT  114 (626)
Q Consensus        40 Sspvid~dG~IwI-gS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT--~ggL~~id~~~~~~~~~~~  114 (626)
                      .......+|.+.+ |+ |+.+..+|. +++....+....  ..+.++....++.+.+..  ++.+...+.....      
T Consensus        21 ~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------   92 (317)
T d1vyhc1          21 TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT--DSVQDISFDHSGKLLASCSADMTIKLWDFQGFE------   92 (317)
T ss_dssp             EEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCS--SCEEEEEECTTSSEEEEEETTSCCCEEETTSSC------
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCC--CcEEEEeeecccccccccccccccccccccccc------
Confidence            3444445666555 45 567888886 776654443211  223445555666655543  4455555554431      


Q ss_pred             EEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEE
Q 006913          115 QVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVID  193 (626)
Q Consensus       115 ~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD  193 (626)
                       .....   ...............+..+..++.++-+..++.. ++.......            ..   . ........
T Consensus        93 -~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~------------~~---~-~~~~~~~~  152 (317)
T d1vyhc1          93 -CIRTM---HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG------------HR---E-WVRMVRPN  152 (317)
T ss_dssp             -EEECC---CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC------------CS---S-CEEEEEEC
T ss_pred             -ccccc---ccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEcc------------CC---C-cceeeecc
Confidence             11110   0111222222222344556667777777778864 665443300            00   0 11223344


Q ss_pred             cCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCC----------C---------CcceeeeeecCC-eEEEEEcCCCEEEE
Q 006913          194 QCEGSIYISNTQGELYSLSAHSPYFNWIQDLSS----------F---------DKAFTLTPGNNG-YLYVTIPVRALVLA  253 (626)
Q Consensus       194 ~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s----------~---------~~v~sI~~D~dG-~LwVGT~~gG~l~a  253 (626)
                      +.+..|..++.++.+..++..+++.........          .         ..........++ .+..++ .++.+..
T Consensus       153 ~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~~  231 (317)
T d1vyhc1         153 QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS-RDKTIKM  231 (317)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE-TTSEEEE
T ss_pred             cCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEecc-CCCEEEE
Confidence            323445566677888888887766544321100          0         000011111233 455555 4578888


Q ss_pred             EECCCCcEEEEEecCCCCCceeeEEEeeCCe-EEEEEcCCeEEEEcCC-CCEEEEeeccCCCCccccCceEEEEEEecCC
Q 006913          254 LDTSSGNILWHKSVGPLGSAEYAPVVDSNGW-ISVGSLDGLLYSFSPS-GVLNKFSKSDTSDSVIQSSPYWFHLLGPSIG  331 (626)
Q Consensus       254 lD~~tG~~~w~~~~~~l~~~~sspvvD~dG~-IWVGT~~gGLy~~d~~-g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG  331 (626)
                      +|..+++.+......  ...+..+...++|. |..|+.++.|..+|.. ++......   .     ....|.++....+|
T Consensus       232 ~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~-----h~~~V~~~~~s~~~  301 (317)
T d1vyhc1         232 WDVSTGMCLMTLVGH--DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN---A-----HEHFVTSLDFHKTA  301 (317)
T ss_dssp             EETTTTEEEEEEECC--SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE---C-----CSSCEEEEEECSSS
T ss_pred             EECCCCcEEEEEeCC--CCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEc---C-----CCCCEEEEEEcCCC
Confidence            898888877654432  12345566666665 6668888889999864 55433322   0     12235555555566


Q ss_pred             cEEEEEeeecCe
Q 006913          332 LKAILCLMVVGQ  343 (626)
Q Consensus       332 ~IwI~T~t~~Gg  343 (626)
                      .+. .+++..|.
T Consensus       302 ~~l-~s~s~Dg~  312 (317)
T d1vyhc1         302 PYV-VTGSVDQT  312 (317)
T ss_dssp             SCE-EEEETTSE
T ss_pred             CEE-EEEeCCCe
Confidence            543 34433343

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.52  E-value=0.36  Score=45.82  Aligned_cols=189  Identities=12%  Similarity=0.040  Sum_probs=109.8

Q ss_pred             CCEEEEEe--CCcEEEEcCCCCEEEEEeCCCCCCcccCeEEec-CCeEEEEE--CCeEEEEECCCCccccceeEEEecCC
Q 006913           47 DGKIYACS--EKTLFAFESNGTIAWSLDLDFTCNIGTAPVHGG-TGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTG  121 (626)
Q Consensus        47 dG~IwIgS--dggL~a~d~~G~~~W~~~~~~~~~i~~sp~iD~-dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~  121 (626)
                      ++.||...  .+.+++.+.+|.....+..... .....+.+|. .++||+..  .+.|.++++++..     ........
T Consensus        47 ~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~-~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~-----~~~l~~~~  120 (263)
T d1npea_          47 DKVVYWTDISEPSIGRASLHGGEPTTIIRQDL-GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-----RRVLFDTG  120 (263)
T ss_dssp             TTEEEEEETTTTEEEEEESSSCCCEEEECTTC-CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-----CEEEECSS
T ss_pred             CCEEEEEECCCCeEEEEEcccCCcEEEEEecc-ccccEEEEeccCCeEEEeccCCCEEEEEecCCce-----EEEEeccc
Confidence            57787765  3467777765443222221110 1233566774 67898875  5789999887642     12222111


Q ss_pred             CCCCCCCCeeEEEEEE-cCCeEEEEEcCC---eEEEEeCCCcEEEEECCcccccccccccccCCCCCccccceEEEcCCC
Q 006913          122 SGKGGTGAIAGIAVST-SSSSVYINVKGR---ALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEG  197 (626)
Q Consensus       122 ~~~~~~~~~I~s~~~d-~dG~LwIgT~~g---GL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG  197 (626)
                           .... ..++.+ ..|.||....+.   .|++.+.+|...-...        .    .++.   ....+++|..++
T Consensus       121 -----l~~p-~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~--------~----~~~~---~P~glaiD~~~~  179 (263)
T d1npea_         121 -----LVNP-RGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILA--------Q----DNLG---LPNGLTFDAFSS  179 (263)
T ss_dssp             -----CSSE-EEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEE--------C----TTCS---CEEEEEEETTTT
T ss_pred             -----ccCC-cEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeee--------e----eccc---ccceEEEeecCc
Confidence                 1122 333444 678888765432   3888887754321110        0    0000   123467785467


Q ss_pred             eEEEEc-CCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEE
Q 006913          198 SIYISN-TQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHK  265 (626)
Q Consensus       198 ~LwIGT-~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~  265 (626)
                      .||+.. ..+.|.+++.++........  +......++++ ++.||+.....+.++.+|+.+|+.....
T Consensus       180 ~lYw~d~~~~~I~~~~~~g~~~~~v~~--~~~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~  245 (263)
T d1npea_         180 QLCWVDAGTHRAECLNPAQPGRRKVLE--GLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTF  245 (263)
T ss_dssp             EEEEEETTTTEEEEEETTEEEEEEEEE--CCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEEEeCCCCEEEEEECCCCCeEEEEC--CCCCcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEE
Confidence            897764 45679999998865543322  22234567776 7899999877789999998888765433

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.48  E-value=0.4  Score=45.95  Aligned_cols=238  Identities=12%  Similarity=0.015  Sum_probs=122.4

Q ss_pred             eeeEEeeCCEEEE-EeCCcEEEEcC-CCCEEEEEeCCCC----------------CCcccCeEEecCCeEEE-EE-CCeE
Q 006913           40 SKPLIGEDGKIYA-CSEKTLFAFES-NGTIAWSLDLDFT----------------CNIGTAPVHGGTGEVYI-VA-ENRV   99 (626)
Q Consensus        40 Sspvid~dG~IwI-gSdggL~a~d~-~G~~~W~~~~~~~----------------~~i~~sp~iD~dG~IwV-gT-~ggL   99 (626)
                      .+.....+|.+.+ |+++.+..+|. +|+....+.....                ...+.++....+|++.+ |+ ++.|
T Consensus        66 ~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v  145 (388)
T d1erja_          66 CCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLI  145 (388)
T ss_dssp             CEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCE
T ss_pred             EEEEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceeccccccc
Confidence            3445556777655 45778888887 7766543322100                01133445556676544 44 6778


Q ss_pred             EEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEE-EcCCeEEEEEcCCeEEEEeCC-CcEEEEECCccccccccccc
Q 006913          100 LKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVS-TSSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGC  177 (626)
Q Consensus       100 ~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~-d~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~  177 (626)
                      ..++...+..     .....     .... .+..... ..+..+..++.++.+..+|.. .........       .   
T Consensus       146 ~i~~~~~~~~-----~~~~~-----~h~~-~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-------~---  204 (388)
T d1erja_         146 RIWDIENRKI-----VMILQ-----GHEQ-DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI-------E---  204 (388)
T ss_dssp             EEEETTTTEE-----EEEEC-----CCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-------S---
T ss_pred             cccccccccc-----ccccc-----cccc-cccccccccccccccccccceeeeeeecccccccccccc-------c---
Confidence            8888776531     11111     1112 2333333 344567777777778888875 433332200       0   


Q ss_pred             ccCCCCCccccceEE-EcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCC------CCCcceeeeeecCCeE-EEEEcCCC
Q 006913          178 TKTDVDCYFTSVPVI-DQCEGSIYISNTQGELYSLSAHSPYFNWIQDLS------SFDKAFTLTPGNNGYL-YVTIPVRA  249 (626)
Q Consensus       178 ~~~l~~~~i~sspvi-D~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~------s~~~v~sI~~D~dG~L-wVGT~~gG  249 (626)
                            ... ..... ...+..|..|+.++.|..++..++.........      ....+.++....+|.+ ..++ .++
T Consensus       205 ------~~~-~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~d~  276 (388)
T d1erja_         205 ------DGV-TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS-LDR  276 (388)
T ss_dssp             ------SCE-EEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE-TTS
T ss_pred             ------ccc-ccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEE-CCC
Confidence                  001 11122 111344666778888999999988766543221      1234566666667754 4444 456


Q ss_pred             EEEEEECCCCcEEEEEecC----------CCCCceeeEEEeeCC-eEEEEEcCCeEEEEcCC-CCEEEE
Q 006913          250 LVLALDTSSGNILWHKSVG----------PLGSAEYAPVVDSNG-WISVGSLDGLLYSFSPS-GVLNKF  306 (626)
Q Consensus       250 ~l~alD~~tG~~~w~~~~~----------~l~~~~sspvvD~dG-~IWVGT~~gGLy~~d~~-g~~~~~  306 (626)
                      .+..+|..++.........          .....+.++...++| .|..|+.++.|+.+|.. ++....
T Consensus       277 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~  345 (388)
T d1erja_         277 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM  345 (388)
T ss_dssp             EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             cEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEE
Confidence            7777776665433211110          001123445565555 57778888999999964 665443

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.27  E-value=0.44  Score=44.17  Aligned_cols=144  Identities=8%  Similarity=-0.018  Sum_probs=85.8

Q ss_pred             CCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCe
Q 006913          139 SSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPY  217 (626)
Q Consensus       139 dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~  217 (626)
                      +..+..+..++.+..+|.. ++.......            ..   .. .........+..++.++.++.|..++.+++.
T Consensus       171 ~~~~~~~~~d~~i~~~d~~~~~~~~~~~~------------~~---~~-~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~  234 (355)
T d1nexb2         171 GNIVVSGSYDNTLIVWDVAQMKCLYILSG------------HT---DR-IYSTIYDHERKRCISASMDTTIRIWDLENGE  234 (355)
T ss_dssp             TTEEEEEETTSCEEEEETTTTEEEEEECC------------CS---SC-EEEEEEETTTTEEEEEETTSCEEEEETTTCC
T ss_pred             cceeeeecccceeeeeecccccceeeeec------------cc---cc-cccccccccceeeecccccceEEeeeccccc
Confidence            4455566666777777864 655443210            00   01 1223444435667888888889999999987


Q ss_pred             EEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEEEEEcCCeEEEE
Q 006913          218 FNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSF  297 (626)
Q Consensus       218 ~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~  297 (626)
                      ........ ...+.++..+ +..|+.|+ .++.+...|..++..........   .........++.+.+++.++.|..+
T Consensus       235 ~~~~~~~h-~~~v~~~~~~-~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~g~d~~i~vw  308 (355)
T d1nexb2         235 LMYTLQGH-TALVGLLRLS-DKFLVSAA-ADGSIRGWDANDYSRKFSYHHTN---LSAITTFYVSDNILVSGSENQFNIY  308 (355)
T ss_dssp             EEEEECCC-SSCCCEEEEC-SSEEEEEC-TTSEEEEEETTTCCEEEEEECTT---CCCCCEEEECSSEEEEEETTEEEEE
T ss_pred             cccccccc-cccccccccc-cceeeeee-cccccccccccccceecccccCC---ceEEEEEcCCCCEEEEEeCCEEEEE
Confidence            76654321 1234455554 44666666 45788888988887655443332   1111223346778887778899999


Q ss_pred             cCC-CCEE
Q 006913          298 SPS-GVLN  304 (626)
Q Consensus       298 d~~-g~~~  304 (626)
                      |.. |+..
T Consensus       309 d~~tg~~~  316 (355)
T d1nexb2         309 NLRSGKLV  316 (355)
T ss_dssp             ETTTCCBC
T ss_pred             ECCCCCEE
Confidence            964 6543

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.24  E-value=0.6  Score=45.30  Aligned_cols=234  Identities=10%  Similarity=-0.066  Sum_probs=114.9

Q ss_pred             eeeEEeeCCEEEE-Ee-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEE-EE-CCeEEEEECCCCcccccee
Q 006913           40 SKPLIGEDGKIYA-CS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYI-VA-ENRVLKVDLLKIGTSESAT  114 (626)
Q Consensus        40 Sspvid~dG~IwI-gS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwV-gT-~ggL~~id~~~~~~~~~~~  114 (626)
                      +......+|.+.+ |+ ++.+..+|. ++++.....+......+.++....++++.+ ++ ++.|...|..++..     
T Consensus        11 t~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~-----   85 (371)
T d1k8kc_          11 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW-----   85 (371)
T ss_dssp             CEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE-----
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc-----
Confidence            3444456776554 55 455777886 555432222211112345666667777555 34 67788878765421     


Q ss_pred             EEEecCCCCCCCCCCeeEEEEEEcCC-eEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEE
Q 006913          115 QVFYGTGSGKGGTGAIAGIAVSTSSS-SVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVI  192 (626)
Q Consensus       115 ~~~~~~~~~~~~~~~~I~s~~~d~dG-~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspvi  192 (626)
                      .-.....   .. ...+..+.-..++ .+.+++.++-+..++.+ +...+....   .   .    ... ...+ .+...
T Consensus        86 ~~~~~~~---~~-~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~---~---~----~~~-~~~v-~~v~~  149 (371)
T d1k8kc_          86 KPTLVIL---RI-NRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH---I---K----KPI-RSTV-LSLDW  149 (371)
T ss_dssp             EEEEECC---CC-SSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE---E---C----TTC-CSCE-EEEEE
T ss_pred             ccccccc---cc-cccccccccccccccceeecccCcceeeeeecccccccccc---c---c----ccc-cccc-ccccc
Confidence            1111100   11 1233443334444 46667766555555432 222222100   0   0    000 0111 23334


Q ss_pred             EcCCCeEEEEcCCCeEEEEeCCCCeEEEEE-----------------cCCCCCcceeeeeecCCe-EEEEEcCCCEEEEE
Q 006913          193 DQCEGSIYISNTQGELYSLSAHSPYFNWIQ-----------------DLSSFDKAFTLTPGNNGY-LYVTIPVRALVLAL  254 (626)
Q Consensus       193 D~~dG~LwIGT~~GgL~~ld~~tg~~~w~~-----------------~~~s~~~v~sI~~D~dG~-LwVGT~~gG~l~al  254 (626)
                      .+.+..|..|+.++.+..++...+......                 .......+.+++...+|. |..++ .++.+...
T Consensus       150 ~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~-~d~~i~iw  228 (371)
T d1k8kc_         150 HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS-HDSTVCLA  228 (371)
T ss_dssp             CTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE-TTTEEEEE
T ss_pred             cccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccc-cCCcceEE
Confidence            441334556777888888877654321110                 000112244555556664 55555 45788888


Q ss_pred             ECCCCcEEEEEecCCCCCceeeEEEeeCCeEEEEEcCCeEEEE
Q 006913          255 DTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSF  297 (626)
Q Consensus       255 D~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~  297 (626)
                      |..++..........  ..+.++...++|.+.+++.++.+..+
T Consensus       229 d~~~~~~~~~~~~~~--~~v~s~~fs~d~~~la~g~d~~~~~~  269 (371)
T d1k8kc_         229 DADKKMAVATLASET--LPLLAVTFITESSLVAAGHDCFPVLF  269 (371)
T ss_dssp             EGGGTTEEEEEECSS--CCEEEEEEEETTEEEEEETTSSCEEE
T ss_pred             eeecccceeeeeccc--ccceeeeecCCCCEEEEEcCCceEEE
Confidence            888887765543321  12445666778888888777654443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.62  Score=44.06  Aligned_cols=154  Identities=11%  Similarity=0.087  Sum_probs=92.5

Q ss_pred             cCeEEec-CCeEEEEE--CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEE-cCCeEEEEEcC--CeEEEE
Q 006913           81 TAPVHGG-TGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVST-SSSSVYINVKG--RALFAF  154 (626)
Q Consensus        81 ~sp~iD~-dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d-~dG~LwIgT~~--gGL~a~  154 (626)
                      ..+.+|. .++||+..  .+.|.+++.++..     ........     .... ..++.+ ..|.||+...+  ..|++.
T Consensus        80 ~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~-----~~~~~~~~-----~~~P-~~l~vd~~~g~ly~~~~~~~~~I~r~  148 (266)
T d1ijqa1          80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-----RKTLFREN-----GSKP-RAIVVDPVHGFMYWTDWGTPAKIKKG  148 (266)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSS-----EEEEEECT-----TCCE-EEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             ceEEEeeccceEEEEecCCCEEEeEecCCce-----EEEEEcCC-----CCCc-ceEEEEcccCeEEEeccCCCcceeEe
Confidence            3567774 67899986  5688999887642     12211111     1122 333444 57889887543  468888


Q ss_pred             eCCCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEc-CCCeEEEEeCCCCeEEEEEcC-CCCCccee
Q 006913          155 MTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISN-TQGELYSLSAHSPYFNWIQDL-SSFDKAFT  232 (626)
Q Consensus       155 d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT-~~GgL~~ld~~tg~~~w~~~~-~s~~~v~s  232 (626)
                      +.+|...-..-.            ..+.   ....+.+|..+++||+.. ..+.|.+++.++....-.... ........
T Consensus       149 ~~dGs~~~~l~~------------~~~~---~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~  213 (266)
T d1ijqa1         149 GLNGVDIYSLVT------------ENIQ---WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFS  213 (266)
T ss_dssp             ETTSCCEEEEEC------------SSCS---CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEE
T ss_pred             ccCCCceecccc------------cccc---eeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEE
Confidence            888653322100            0000   123467775467788774 467899999987654332222 22234456


Q ss_pred             eeeecCCeEEEEEcCCCEEEEEECCCCcE
Q 006913          233 LTPGNNGYLYVTIPVRALVLALDTSSGNI  261 (626)
Q Consensus       233 I~~D~dG~LwVGT~~gG~l~alD~~tG~~  261 (626)
                      ++++ ++.||+.....+.++.+++.+|..
T Consensus       214 lav~-~~~ly~td~~~~~I~~~~~~~g~~  241 (266)
T d1ijqa1         214 LAVF-EDKVFWTDIINEAIFSANRLTGSD  241 (266)
T ss_dssp             EEEE-TTEEEEEETTTTEEEEEETTTCCC
T ss_pred             EEEE-CCEEEEEECCCCeEEEEECCCCcc
Confidence            7777 679999877678899999877753

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.17  E-value=1.4  Score=41.86  Aligned_cols=201  Identities=14%  Similarity=0.045  Sum_probs=98.7

Q ss_pred             EEeeCCEEE-EEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCe-EEEEE-CCeEEEEECCCCccccceeEEE
Q 006913           43 LIGEDGKIY-ACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGE-VYIVA-ENRVLKVDLLKIGTSESATQVF  117 (626)
Q Consensus        43 vid~dG~Iw-IgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~-IwVgT-~ggL~~id~~~~~~~~~~~~~~  117 (626)
                      ....+|.+. .|+ ++.+..++. .++.........  ..+..+....++. +..++ ++.+...|..+...     ...
T Consensus       128 ~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-----~~~  200 (388)
T d1erja_         128 CFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHE--QDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC-----SLT  200 (388)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-----EEE
T ss_pred             EECCCCCcceeccccccccccccccccccccccccc--ccccccccccccccccccccceeeeeeecccccc-----ccc
Confidence            343455444 455 556777776 665554332111  1233344444554 44455 67788888776421     111


Q ss_pred             ecCCCCCCCCCCeeEEEEEEcCCe-EEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcC
Q 006913          118 YGTGSGKGGTGAIAGIAVSTSSSS-VYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQC  195 (626)
Q Consensus       118 ~~~~~~~~~~~~~I~s~~~d~dG~-LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~  195 (626)
                      ...      ....+.......+++ |..++.++.+..++.. +............       ... ....+ .++...+.
T Consensus       201 ~~~------~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~-------~~~-h~~~v-~~l~~s~~  265 (388)
T d1erja_         201 LSI------EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES-------GTG-HKDSV-YSVVFTRD  265 (388)
T ss_dssp             EEC------SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC-------------CC-CSSCE-EEEEECTT
T ss_pred             ccc------ccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeecccccc-------ccC-CCCCE-EEEEECCC
Confidence            111      112233333334444 5557777888889974 7666553110000       000 01112 33444432


Q ss_pred             CCeEEEEcCCCeEEEEeCCCCeEEEEEcCC-----------CCCcceeeeeecCCe-EEEEEcCCCEEEEEECCCCcEEE
Q 006913          196 EGSIYISNTQGELYSLSAHSPYFNWIQDLS-----------SFDKAFTLTPGNNGY-LYVTIPVRALVLALDTSSGNILW  263 (626)
Q Consensus       196 dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~-----------s~~~v~sI~~D~dG~-LwVGT~~gG~l~alD~~tG~~~w  263 (626)
                      +..|..|+.++.|..+|..++.........           ....+.++....+|. |..|+ .++.+..+|..+++.+.
T Consensus       266 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~-~dg~i~vwd~~~~~~~~  344 (388)
T d1erja_         266 GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS-KDRGVLFWDKKSGNPLL  344 (388)
T ss_dssp             SSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE-TTSEEEEEETTTCCEEE
T ss_pred             CCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEe-CCCEEEEEECCCCcEEE
Confidence            445677777888988888765433221100           012345566666664 55555 45788889999998876


Q ss_pred             EEe
Q 006913          264 HKS  266 (626)
Q Consensus       264 ~~~  266 (626)
                      ...
T Consensus       345 ~l~  347 (388)
T d1erja_         345 MLQ  347 (388)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.89  E-value=1.4  Score=40.29  Aligned_cols=130  Identities=8%  Similarity=0.018  Sum_probs=75.7

Q ss_pred             cCCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCC
Q 006913          138 SSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSP  216 (626)
Q Consensus       138 ~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg  216 (626)
                      .+..|..++.++.|..+|.. ++.+.....            +    .....+...+  ++.|..|+.++.|..+|....
T Consensus       186 ~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~------------~----~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~  247 (342)
T d2ovrb2         186 DGIHVVSGSLDTSIRVWDVETGNCIHTLTG------------H----QSLTSGMELK--DNILVSGNADSTVKIWDIKTG  247 (342)
T ss_dssp             CSSEEEEEETTSCEEEEETTTCCEEEEECC------------C----CSCEEEEEEE--TTEEEEEETTSCEEEEETTTC
T ss_pred             CCCEEEEEeCCCeEEEeecccceeeeEecc------------c----ccceeEEecC--CCEEEEEcCCCEEEEEecccc
Confidence            45567777888889999975 666554310            0    0112233344  677888888999999999887


Q ss_pred             eEEEEEcCCC--CCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCC---CCCceeeEEEeeCCeEEE
Q 006913          217 YFNWIQDLSS--FDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGP---LGSAEYAPVVDSNGWISV  287 (626)
Q Consensus       217 ~~~w~~~~~s--~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~---l~~~~sspvvD~dG~IWV  287 (626)
                      +.........  ...+.++..+ ...+..|+ .++.+...|..+|+.+.......   ....+.++...+++.+.+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~s-~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la  321 (342)
T d2ovrb2         248 QCLQTLQGPNKHQSAVTCLQFN-KNFVITSS-DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCA  321 (342)
T ss_dssp             CEEEEECSTTSCSSCEEEEEEC-SSEEEEEE-TTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEE
T ss_pred             cccccccccceeeeceeecccC-CCeeEEEc-CCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEE
Confidence            6654433211  1223333333 23445555 46789999999998876543221   112345556665655443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.76  E-value=0.97  Score=45.47  Aligned_cols=204  Identities=8%  Similarity=-0.002  Sum_probs=105.8

Q ss_pred             CEEEEEe--CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCe-EEEEE-CCeEEEEECCCCccccceeEEEecCCC
Q 006913           48 GKIYACS--EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGE-VYIVA-ENRVLKVDLLKIGTSESATQVFYGTGS  122 (626)
Q Consensus        48 G~IwIgS--dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~-IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~  122 (626)
                      +.+++..  ++.+..+|. +++.+-.+..+.   ....+....||+ +|++. ++.+..+|..++..   ..........
T Consensus        32 ~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~---~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~---~~~~~i~~~~  105 (432)
T d1qksa2          32 NLFSVTLRDAGQIALIDGSTYEIKTVLDTGY---AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP---TTVAEIKIGS  105 (432)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEEECSS---CEEEEEECTTSCEEEEEETTSEEEEEETTSSSC---CEEEEEECCS
T ss_pred             cEEEEEEcCCCEEEEEECCCCcEEEEEeCCC---CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCc---eEEEEEecCC
Confidence            3334443  567889998 788776565432   244566778887 56666 78899999876531   0111111100


Q ss_pred             CCCCCCCeeEEEEEEcCC-eEEEEE-cCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCe-
Q 006913          123 GKGGTGAIAGIAVSTSSS-SVYINV-KGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGS-  198 (626)
Q Consensus       123 ~~~~~~~~I~s~~~d~dG-~LwIgT-~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~-  198 (626)
                         .....+..+....|| .|++.. .++.+..+|.. ++.+-.........  .   ........-...++..+ +|. 
T Consensus       106 ---~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~--~---~~~~~~~~~~~~v~~s~-dg~~  176 (432)
T d1qksa2         106 ---EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY--D---EQEYHPEPRVAAILASH-YRPE  176 (432)
T ss_dssp             ---EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECT--T---TCCEESCCCEEEEEECS-SSSE
T ss_pred             ---CCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccc--c---ceeccCCCceeEEEECC-CCCE
Confidence               000011111112355 467654 45778889974 76654321000000  0   00000000011123333 444 


Q ss_pred             EEEE-cCCCeEEEEeCCCCeEE--EEEcCCCCCcceeeeeecCCe-EEEEEcCCCEEEEEECCCCcEEEEEecC
Q 006913          199 IYIS-NTQGELYSLSAHSPYFN--WIQDLSSFDKAFTLTPGNNGY-LYVTIPVRALVLALDTSSGNILWHKSVG  268 (626)
Q Consensus       199 LwIG-T~~GgL~~ld~~tg~~~--w~~~~~s~~~v~sI~~D~dG~-LwVGT~~gG~l~alD~~tG~~~w~~~~~  268 (626)
                      +++. ...+.+..++..+++..  +....+  .....+..+.||+ ++++...+..+..+|..++...+....+
T Consensus       177 ~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g--~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g  248 (432)
T d1qksa2         177 FIVNVKETGKILLVDYTDLNNLKTTEISAE--RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTG  248 (432)
T ss_dssp             EEEEETTTTEEEEEETTCSSEEEEEEEECC--SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred             EEEEEccCCeEEEEEccCCCcceEEEEccc--CccccceECCCCCEEEEeccccceEEEeecccceEEEEeccC
Confidence            3343 33567888888776533  332322  2345667778885 7777766678888898888887765544

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.54  E-value=1.7  Score=39.82  Aligned_cols=140  Identities=7%  Similarity=-0.069  Sum_probs=82.0

Q ss_pred             CeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeE
Q 006913          140 SSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYF  218 (626)
Q Consensus       140 G~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~  218 (626)
                      ..+..+..++.+..+|.. ++....+..            +   ...+ .++...+.+..|..|+.++.+..++.+....
T Consensus       197 ~~~~~~~~d~~v~i~d~~~~~~~~~~~~------------h---~~~i-~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~  260 (340)
T d1tbga_         197 RLFVSGACDASAKLWDVREGMCRQTFTG------------H---ESDI-NAICFFPNGNAFATGSDDATCRLFDLRADQE  260 (340)
T ss_dssp             SEEEEEETTTEEEEEETTTTEEEEEECC------------C---SSCE-EEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred             ceeEEeecCceEEEEECCCCcEEEEEeC------------C---CCCe-EEEEECCCCCEEEEEeCCCeEEEEeeccccc
Confidence            334455666778888864 776654310            0   0111 3344444244567777888899999988765


Q ss_pred             EEEEcCC-CCCcceeeeeecCCe-EEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCC-eEEEEEcCCeEE
Q 006913          219 NWIQDLS-SFDKAFTLTPGNNGY-LYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNG-WISVGSLDGLLY  295 (626)
Q Consensus       219 ~w~~~~~-s~~~v~sI~~D~dG~-LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG-~IWVGT~~gGLy  295 (626)
                      ....... ....+..+....+|. |.+|+ .++.+..+|..+++........  ...+.++...++| .|..|+.++.|.
T Consensus       261 ~~~~~~~~~~~~i~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~H--~~~V~~l~~s~d~~~l~s~s~Dg~v~  337 (340)
T d1tbga_         261 LMTYSHDNIICGITSVSFSKSGRLLLAGY-DDFNCNVWDALKADRAGVLAGH--DNRVSCLGVTDDGMAVATGSWDSFLK  337 (340)
T ss_dssp             EEEECCTTCCSCEEEEEECSSSCEEEEEE-TTSCEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred             ccccccccccCceEEEEECCCCCEEEEEE-CCCEEEEEECCCCcEEEEEcCC--CCCEEEEEEeCCCCEEEEEccCCEEE
Confidence            5443322 123355566666775 44455 4578888998888877554322  1234556666665 455567777666


Q ss_pred             EEc
Q 006913          296 SFS  298 (626)
Q Consensus       296 ~~d  298 (626)
                      .+|
T Consensus       338 iWd  340 (340)
T d1tbga_         338 IWN  340 (340)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            553

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.08  E-value=2.2  Score=39.14  Aligned_cols=146  Identities=14%  Similarity=0.018  Sum_probs=85.8

Q ss_pred             eEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCC-eEEEE-cCCCeEEEEeCCCCe
Q 006913          141 SVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEG-SIYIS-NTQGELYSLSAHSPY  217 (626)
Q Consensus       141 ~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG-~LwIG-T~~GgL~~ld~~tg~  217 (626)
                      .+..++.++.|..+|.. ++.+.....     + .    ..   . ....+.+.+ +| .||++ +.++.|+.+|.++++
T Consensus         3 ~~vt~~~d~~v~v~D~~s~~~~~~i~~-----~-~----~~---~-~~~~i~~sp-Dg~~l~v~~~~~~~v~v~D~~t~~   67 (337)
T d1pbyb_           3 YILAPARPDKLVVIDTEKMAVDKVITI-----A-D----AG---P-TPMVPMVAP-GGRIAYATVNKSESLVKIDLVTGE   67 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEEC-----T-T----CT---T-CCCCEEECT-TSSEEEEEETTTTEEEEEETTTCC
T ss_pred             EEEEEcCCCEEEEEECCCCeEEEEEEC-----C-C----CC---C-CccEEEECC-CCCEEEEEECCCCeEEEEECCCCc
Confidence            35567778899999975 777665400     0 0    00   0 123456665 55 57765 457889999999999


Q ss_pred             EEEEEcCCC----CCcceeeeeecCC-eEEEEEc-----------CCCEEEEEECCCCcEEEEEecCCCCCceeeEEEee
Q 006913          218 FNWIQDLSS----FDKAFTLTPGNNG-YLYVTIP-----------VRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDS  281 (626)
Q Consensus       218 ~~w~~~~~s----~~~v~sI~~D~dG-~LwVGT~-----------~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~  281 (626)
                      ..+......    ......++...+| .+|++..           ....+..+|..++...+......   ....+.+++
T Consensus        68 ~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~s~  144 (337)
T d1pbyb_          68 TLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR---QITMLAWAR  144 (337)
T ss_dssp             EEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS---SCCCEEECT
T ss_pred             EEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccC---CceEEEEcC
Confidence            887654321    1112334444555 5666542           12456677888888777655442   233456666


Q ss_pred             CCe-EEEEEcCCeEEEEcCC-CCEEEE
Q 006913          282 NGW-ISVGSLDGLLYSFSPS-GVLNKF  306 (626)
Q Consensus       282 dG~-IWVGT~~gGLy~~d~~-g~~~~~  306 (626)
                      +|. ++++.  +.+..+|.. ++....
T Consensus       145 dg~~l~~~~--~~~~~~d~~~~~~~~~  169 (337)
T d1pbyb_         145 DGSKLYGLG--RDLHVMDPEAGTLVED  169 (337)
T ss_dssp             TSSCEEEES--SSEEEEETTTTEEEEE
T ss_pred             CCCEEEEEc--CCcceeeeecCcEEEE
Confidence            765 55553  456778864 554443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.80  E-value=2.7  Score=39.31  Aligned_cols=148  Identities=13%  Similarity=0.047  Sum_probs=88.5

Q ss_pred             EEE-cCCeEEEEEcC-CeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcC--CCeEEE
Q 006913          135 VST-SSSSVYINVKG-RALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT--QGELYS  210 (626)
Q Consensus       135 ~~d-~dG~LwIgT~~-gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~--~GgL~~  210 (626)
                      ..| ..++||+.... +.+..++.+|.......        .    ...   .-...+++|+..|.||+...  .+.|++
T Consensus        83 AvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~--------~----~~~---~~P~~l~vd~~~g~ly~~~~~~~~~I~r  147 (266)
T d1ijqa1          83 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF--------R----ENG---SKPRAIVVDPVHGFMYWTDWGTPAKIKK  147 (266)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSSSEEEEE--------E----CTT---CCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred             EEeeccceEEEEecCCCEEEeEecCCceEEEEE--------c----CCC---CCcceEEEEcccCeEEEeccCCCcceeE
Confidence            344 68889987644 55788888765432210        0    000   01244677866788988754  357999


Q ss_pred             EeCCCCeEEEEEcCCCCCcceeeeeec-CCeEEEEEcCCCEEEEEECCCCcEEEEE-ecCCCCCceeeEEEeeCCeEEEE
Q 006913          211 LSAHSPYFNWIQDLSSFDKAFTLTPGN-NGYLYVTIPVRALVLALDTSSGNILWHK-SVGPLGSAEYAPVVDSNGWISVG  288 (626)
Q Consensus       211 ld~~tg~~~w~~~~~s~~~v~sI~~D~-dG~LwVGT~~gG~l~alD~~tG~~~w~~-~~~~l~~~~sspvvD~dG~IWVG  288 (626)
                      .+.++....-.... .......++.|. +++||+.....+.+..++.......-.. ....+ .....+.++ +++||+.
T Consensus       148 ~~~dGs~~~~l~~~-~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~-~~p~~lav~-~~~ly~t  224 (266)
T d1ijqa1         148 GGLNGVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRL-AHPFSLAVF-EDKVFWT  224 (266)
T ss_dssp             EETTSCCEEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTT-SSEEEEEEE-TTEEEEE
T ss_pred             eccCCCceeccccc-ccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcc-cccEEEEEE-CCEEEEE
Confidence            99987654433221 223345677884 5689998766678888886443322211 11111 123456777 7899998


Q ss_pred             E-cCCeEEEEcCC
Q 006913          289 S-LDGLLYSFSPS  300 (626)
Q Consensus       289 T-~~gGLy~~d~~  300 (626)
                      . .++.|++++..
T Consensus       225 d~~~~~I~~~~~~  237 (266)
T d1ijqa1         225 DIINEAIFSANRL  237 (266)
T ss_dssp             ETTTTEEEEEETT
T ss_pred             ECCCCeEEEEECC
Confidence            6 45788998863

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.77  E-value=2.7  Score=39.27  Aligned_cols=187  Identities=10%  Similarity=-0.031  Sum_probs=107.5

Q ss_pred             cCCeEEEEE--CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEE-cCCeEEEEEcC-CeEEEEeCCCcEEE
Q 006913           87 GTGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVST-SSSSVYINVKG-RALFAFMTHGQLLW  162 (626)
Q Consensus        87 ~dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d-~dG~LwIgT~~-gGL~a~d~~G~~~w  162 (626)
                      .++.||...  .+.|+.++.++..     ........     .. ....+..| ..++||+.... +.|...+.+|...-
T Consensus        46 ~~~~iywsd~~~~~I~~~~l~g~~-----~~~v~~~~-----~~-~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~  114 (263)
T d1npea_          46 VDKVVYWTDISEPSIGRASLHGGE-----PTTIIRQD-----LG-SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR  114 (263)
T ss_dssp             TTTEEEEEETTTTEEEEEESSSCC-----CEEEECTT-----CC-CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CCCEEEEEECCCCeEEEEEcccCC-----cEEEEEec-----cc-cccEEEEeccCCeEEEeccCCCEEEEEecCCceEE
Confidence            356788775  4678888876542     11111111     11 12333445 57889887543 67888888754321


Q ss_pred             E-ECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCC---CeEEEEeCCCCeEEEEEcCCCCCcceeeeee-c
Q 006913          163 S-AGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQ---GELYSLSAHSPYFNWIQDLSSFDKAFTLTPG-N  237 (626)
Q Consensus       163 ~-~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~---GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D-~  237 (626)
                      . ...             .+.   ....+++|+..|.||....+   ..|++.+.++....-... ........++.| .
T Consensus       115 ~l~~~-------------~l~---~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~-~~~~~P~glaiD~~  177 (263)
T d1npea_         115 VLFDT-------------GLV---NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ-DNLGLPNGLTFDAF  177 (263)
T ss_dssp             EEECS-------------SCS---SEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEEC-TTCSCEEEEEEETT
T ss_pred             EEecc-------------ccc---CCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeee-ecccccceEEEeec
Confidence            1 100             000   12446788768888877543   348888887754332222 122344567888 4


Q ss_pred             CCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEEEEEc-CCeEEEEcCC-CCEEE
Q 006913          238 NGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSL-DGLLYSFSPS-GVLNK  305 (626)
Q Consensus       238 dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~-~gGLy~~d~~-g~~~~  305 (626)
                      +++||+.....+.+..++.. |........+ + ....++.++ +++||+... ++.|+++|.. |+...
T Consensus       178 ~~~lYw~d~~~~~I~~~~~~-g~~~~~v~~~-~-~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~  243 (263)
T d1npea_         178 SSQLCWVDAGTHRAECLNPA-QPGRRKVLEG-L-QYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMD  243 (263)
T ss_dssp             TTEEEEEETTTTEEEEEETT-EEEEEEEEEC-C-CSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CcEEEEEeCCCCEEEEEECC-CCCeEEEECC-C-CCcEEEEEE-CCEEEEEECCCCEEEEEECCCCccce
Confidence            56898887666788888864 4333222111 1 123457777 789999874 5789999985 55443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=92.66  E-value=0.66  Score=43.13  Aligned_cols=94  Identities=12%  Similarity=0.073  Sum_probs=62.3

Q ss_pred             CeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCC-eEEEEEcCCCEEEEEECCCCcEEEEEecCCC-CC--
Q 006913          197 GSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNG-YLYVTIPVRALVLALDTSSGNILWHKSVGPL-GS--  272 (626)
Q Consensus       197 G~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG-~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l-~~--  272 (626)
                      ..+.+++.++.|..+|.+++++......+....+..++...|| .+||+...++.++.+|..+++.......... ..  
T Consensus         9 ~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~   88 (346)
T d1jmxb_           9 EYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVG   88 (346)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEE
T ss_pred             cEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccC
Confidence            3456677888999999999988775543322234466777787 5788876678899999999988876544321 00  


Q ss_pred             -ceeeEEEeeCC-eEEEEEc
Q 006913          273 -AEYAPVVDSNG-WISVGSL  290 (626)
Q Consensus       273 -~~sspvvD~dG-~IWVGT~  290 (626)
                       ....+.+.+|| .+|++..
T Consensus        89 ~~~~~v~~s~DG~~l~v~~~  108 (346)
T d1jmxb_          89 RSMYSFAISPDGKEVYATVN  108 (346)
T ss_dssp             ECSSCEEECTTSSEEEEEEE
T ss_pred             CceEEEEEecCCCEEEEEec
Confidence             12234555565 5777653

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=92.20  E-value=2.3  Score=39.46  Aligned_cols=103  Identities=13%  Similarity=0.119  Sum_probs=63.5

Q ss_pred             CCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCe-EEEEEcCC-CEEEEEECCCCcEEEEEecCCCCCc
Q 006913          196 EGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGY-LYVTIPVR-ALVLALDTSSGNILWHKSVGPLGSA  273 (626)
Q Consensus       196 dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~-LwVGT~~g-G~l~alD~~tG~~~w~~~~~~l~~~  273 (626)
                      +|++.+....|.|+.+|.+++.....   .....+.++.-..||+ |.++..+. ..++..|..+|.........   ..
T Consensus        14 dG~~~a~~~~g~v~v~d~~~~~~~~~---~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~---~~   87 (360)
T d1k32a3          14 DGDLIAFVSRGQAFIQDVSGTYVLKV---PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENL---GN   87 (360)
T ss_dssp             GGGCEEEEETTEEEEECTTSSBEEEC---SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCC---CS
T ss_pred             CCCEEEEEECCeEEEEECCCCcEEEc---cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCC---ce
Confidence            45555555577899999988876543   2223456666677884 44444333 35778888888765322211   22


Q ss_pred             eeeEEEeeCC-eEEEEEcCCeEEEEcCC-CCEE
Q 006913          274 EYAPVVDSNG-WISVGSLDGLLYSFSPS-GVLN  304 (626)
Q Consensus       274 ~sspvvD~dG-~IWVGT~~gGLy~~d~~-g~~~  304 (626)
                      +..+...++| .|..++.++.++.++.. ++..
T Consensus        88 v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~  120 (360)
T d1k32a3          88 VFAMGVDRNGKFAVVANDRFEIMTVDLETGKPT  120 (360)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             EEeeeecccccccceecccccccccccccccee
Confidence            4456677776 46667778889999875 4443

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.74  E-value=2.2  Score=40.87  Aligned_cols=109  Identities=9%  Similarity=-0.032  Sum_probs=61.5

Q ss_pred             cceEEEcCCCe-EEEEcCCCeEEEEeCCCCeEEEEEcCCC-CCcceeeeeecCCeE-EEEEcCCCEEEEEECCCCcEEEE
Q 006913          188 SVPVIDQCEGS-IYISNTQGELYSLSAHSPYFNWIQDLSS-FDKAFTLTPGNNGYL-YVTIPVRALVLALDTSSGNILWH  264 (626)
Q Consensus       188 sspviD~~dG~-LwIGT~~GgL~~ld~~tg~~~w~~~~~s-~~~v~sI~~D~dG~L-wVGT~~gG~l~alD~~tG~~~w~  264 (626)
                      .+....+ +|. |.+|+.++.|..+|.++++......... ...+.++....+|++ ..++ .++.+...|..++.....
T Consensus        11 t~~~~s~-dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s-~D~~i~vWd~~~~~~~~~   88 (371)
T d1k8kc_          11 SCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCG-TDRNAYVWTLKGRTWKPT   88 (371)
T ss_dssp             CEEEECT-TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEE-TTSCEEEEEEETTEEEEE
T ss_pred             EEEEECC-CCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEE-CCCeEEEEeecccccccc
Confidence            3345554 554 5567777788889988776544433222 234667766667654 4444 345666666656654433


Q ss_pred             EecCCCCCceeeEEEeeCC-eEEEEEcCCeEEEEc
Q 006913          265 KSVGPLGSAEYAPVVDSNG-WISVGSLDGLLYSFS  298 (626)
Q Consensus       265 ~~~~~l~~~~sspvvD~dG-~IWVGT~~gGLy~~d  298 (626)
                      .........+.++...+++ .+.+|+.++-+..++
T Consensus        89 ~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~  123 (371)
T d1k8kc_          89 LVILRINRAARCVRWAPNEKKFAVGSGSRVISICY  123 (371)
T ss_dssp             EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEE
T ss_pred             cccccccccccccccccccccceeecccCcceeee
Confidence            3332212234556666565 477777777555554

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.13  E-value=5.1  Score=36.08  Aligned_cols=181  Identities=10%  Similarity=-0.036  Sum_probs=101.3

Q ss_pred             EEcCCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCC
Q 006913          136 STSSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAH  214 (626)
Q Consensus       136 ~d~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~  214 (626)
                      ......+..++.++.+..+|.. ++.......            +.   .. ......+  +..|..|+.+|.|..+|.+
T Consensus       144 ~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~------------~~---~~-~~~~~~~--~~~l~s~~~dg~i~~~d~~  205 (342)
T d2ovrb2         144 QYDGRRVVSGAYDFMVKVWDPETETCLHTLQG------------HT---NR-VYSLQFD--GIHVVSGSLDTSIRVWDVE  205 (342)
T ss_dssp             EECSSCEEEEETTSCEEEEEGGGTEEEEEECC------------CS---SC-EEEEEEC--SSEEEEEETTSCEEEEETT
T ss_pred             ccccceeeeecCCCeEEEeecccceeeEEEcC------------cc---cc-cccccCC--CCEEEEEeCCCeEEEeecc
Confidence            3445566777777777778865 554443210            00   00 1112223  5667888889999999999


Q ss_pred             CCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCC-CCceeeEEEeeCCeEEEEEcCCe
Q 006913          215 SPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPL-GSAEYAPVVDSNGWISVGSLDGL  293 (626)
Q Consensus       215 tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l-~~~~sspvvD~dG~IWVGT~~gG  293 (626)
                      .++........ ...+.++..+ ++.|..|+. ++.+..+|..+++.......... .........+ ...+..|+.++.
T Consensus       206 ~~~~~~~~~~~-~~~v~~~~~~-~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~s~Dg~  281 (342)
T d2ovrb2         206 TGNCIHTLTGH-QSLTSGMELK-DNILVSGNA-DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN-KNFVITSSDDGT  281 (342)
T ss_dssp             TCCEEEEECCC-CSCEEEEEEE-TTEEEEEET-TSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC-SSEEEEEETTSE
T ss_pred             cceeeeEeccc-ccceeEEecC-CCEEEEEcC-CCEEEEEecccccccccccccceeeeceeecccC-CCeeEEEcCCCE
Confidence            88776543321 1234445444 446666664 56788888877776554432210 1112223333 456777888899


Q ss_pred             EEEEcC-CCCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEEeeecC
Q 006913          294 LYSFSP-SGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLMVVG  342 (626)
Q Consensus       294 Ly~~d~-~g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~t~~G  342 (626)
                      |..+|. +|+...........   .....|.++....+|.+ +.++...|
T Consensus       282 i~iwd~~tg~~i~~~~~~~~~---~~~~~v~~v~~s~~~~~-la~g~~dG  327 (342)
T d2ovrb2         282 VKLWDLKTGEFIRNLVTLESG---GSGGVVWRIRASNTKLV-CAVGSRNG  327 (342)
T ss_dssp             EEEEETTTCCEEEEEEECTTG---GGTCEEEEEEECSSEEE-EEEECSSS
T ss_pred             EEEEECCCCCEEEEEecccCC---CCCCCEEEEEECCCCCE-EEEEeCCC
Confidence            999996 47765433211111   12344667776666654 35654433

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=90.94  E-value=7.5  Score=37.65  Aligned_cols=59  Identities=17%  Similarity=0.147  Sum_probs=34.9

Q ss_pred             ceeeeeecCC-eEEEEEcCCCEEEEEECCC-CcEEEE--EecCCCCCceeeEEEe-eCCeEEEEEcC
Q 006913          230 AFTLTPGNNG-YLYVTIPVRALVLALDTSS-GNILWH--KSVGPLGSAEYAPVVD-SNGWISVGSLD  291 (626)
Q Consensus       230 v~sI~~D~dG-~LwVGT~~gG~l~alD~~t-G~~~w~--~~~~~l~~~~sspvvD-~dG~IWVGT~~  291 (626)
                      ...|+.+.|+ .|||+......+..++... +.....  ...+   ...-.+.+| .+|.+|++...
T Consensus       208 pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~---~~pDNi~~d~~~g~lwva~~p  271 (340)
T d1v04a_         208 ANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFD---TLVDNISVDPVTGDLWVGCHP  271 (340)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECS---SEEEEEEECTTTCCEEEEEES
T ss_pred             cceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCC---CCCCccEEecCCCEEEEEECC
Confidence            3456777665 7999987667777766542 222221  1222   122335667 47899999753

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.64  E-value=6.4  Score=34.82  Aligned_cols=230  Identities=11%  Similarity=-0.052  Sum_probs=111.6

Q ss_pred             ccCeEEecCCeEEEE-E-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeE-EEEEcCCeEEEEeC
Q 006913           80 GTAPVHGGTGEVYIV-A-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSV-YINVKGRALFAFMT  156 (626)
Q Consensus        80 ~~sp~iD~dG~IwVg-T-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~L-wIgT~~gGL~a~d~  156 (626)
                      +.++....++++.+. + ++.|...|..++..     ...+.     .. ...|..+....++.+ ..+.....+...+.
T Consensus        20 I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~-----~~~~~-----~h-~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (317)
T d1vyhc1          20 VTRVIFHPVFSVMVSASEDATIKVWDYETGDF-----ERTLK-----GH-TDSVQDISFDHSGKLLASCSADMTIKLWDF   88 (317)
T ss_dssp             EEEEEECSSSSEEEEEESSSCEEEEETTTCCC-----CEEEC-----CC-SSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCCE-----EEEEe-----CC-CCcEEEEeeecccccccccccccccccccc
Confidence            344555566775554 3 67788888877532     11221     11 123444444444443 33444444445554


Q ss_pred             C-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeee
Q 006913          157 H-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTP  235 (626)
Q Consensus       157 ~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~  235 (626)
                      . .+.....         .   ..   ... .........++.+..+..++.+..+|.++++........ ...+.++..
T Consensus        89 ~~~~~~~~~---------~---~~---~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  151 (317)
T d1vyhc1          89 QGFECIRTM---------H---GH---DHN-VSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH-REWVRMVRP  151 (317)
T ss_dssp             TSSCEEECC---------C---CC---SSC-EEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEE
T ss_pred             ccccccccc---------c---cc---ccc-ceeeeccCCCceEEeeccCcceeEeecccceeeeEEccC-CCcceeeec
Confidence            3 3322111         0   00   001 122233322555777777888888999887765443211 123445556


Q ss_pred             ecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCC----------CCC---------ceeeEEEeeCCeEEEEEcCCeEEE
Q 006913          236 GNNGYLYVTIPVRALVLALDTSSGNILWHKSVGP----------LGS---------AEYAPVVDSNGWISVGSLDGLLYS  296 (626)
Q Consensus       236 D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~----------l~~---------~~sspvvD~dG~IWVGT~~gGLy~  296 (626)
                      ..++.+.+.....+.+...+..++..........          ...         ............+..|+.++.+..
T Consensus       152 ~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~  231 (317)
T d1vyhc1         152 NQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM  231 (317)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEE
T ss_pred             ccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEE
Confidence            6666555443345677777877776654332110          000         001111222445777888888888


Q ss_pred             EcCC-CCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEEeeecCeeEE
Q 006913          297 FSPS-GVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLMVVGQFSS  346 (626)
Q Consensus       297 ~d~~-g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~t~~Ggl~~  346 (626)
                      ++.. ++......        .....|.++....+|.+. .++...|.+..
T Consensus       232 ~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l-~s~~~dg~i~i  273 (317)
T d1vyhc1         232 WDVSTGMCLMTLV--------GHDNWVRGVLFHSGGKFI-LSCADDKTLRV  273 (317)
T ss_dssp             EETTTTEEEEEEE--------CCSSCEEEEEECSSSSCE-EEEETTTEEEE
T ss_pred             EECCCCcEEEEEe--------CCCCCEEEEEECCCCCEE-EEEECCCeEEE
Confidence            8865 54443322        012234556555666643 34444454443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=86.54  E-value=16  Score=35.81  Aligned_cols=184  Identities=10%  Similarity=-0.006  Sum_probs=99.7

Q ss_pred             CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCC-eEEEEEcCCeEEEEeCC-Cc--EEEEECCccccc
Q 006913           96 ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSS-SVYINVKGRALFAFMTH-GQ--LLWSAGPVLDQL  171 (626)
Q Consensus        96 ~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG-~LwIgT~~gGL~a~d~~-G~--~~w~~~~~~~~~  171 (626)
                      ++.|..+|..+++.     .-.+..       +..+..+....|| .+|+++.++.+..+|.. ++  ..-....     
T Consensus        41 ~g~v~v~D~~t~~v-----~~~~~~-------g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~-----  103 (432)
T d1qksa2          41 AGQIALIDGSTYEI-----KTVLDT-------GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-----  103 (432)
T ss_dssp             TTEEEEEETTTCCE-----EEEEEC-------SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-----
T ss_pred             CCEEEEEECCCCcE-----EEEEeC-------CCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEec-----
Confidence            58899999988742     212211       1123344444444 58888888889999963 43  2222100     


Q ss_pred             ccccccccCCCCCccccceEEEcCCCeEEEEcC-CCeEEEEeCCCCeEEEEEcCCC----------CCcceeeeeecCCe
Q 006913          172 GYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT-QGELYSLSAHSPYFNWIQDLSS----------FDKAFTLTPGNNGY  240 (626)
Q Consensus       172 ~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~-~GgL~~ld~~tg~~~w~~~~~s----------~~~v~sI~~D~dG~  240 (626)
                      +  .    .  ...+..++...+.+..||+... ++.+..+|..+++..-......          ......++...+|.
T Consensus       104 ~--~----~--~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~  175 (432)
T d1qksa2         104 G--S----E--ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP  175 (432)
T ss_dssp             C--S----E--EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSS
T ss_pred             C--C----C--CCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCC
Confidence            0  0    0  0011111222221345777554 6789999999988765432210          11223455566775


Q ss_pred             E-EEEEcCCCEEEEEECCCCcEE--EEEecCCCCCceeeEEEeeCCe-EEEEEcC-CeEEEEcCC-CCEEEEe
Q 006913          241 L-YVTIPVRALVLALDTSSGNIL--WHKSVGPLGSAEYAPVVDSNGW-ISVGSLD-GLLYSFSPS-GVLNKFS  307 (626)
Q Consensus       241 L-wVGT~~gG~l~alD~~tG~~~--w~~~~~~l~~~~sspvvD~dG~-IWVGT~~-gGLy~~d~~-g~~~~~~  307 (626)
                      . ++.....+.+..+|..+++..  +....+   ........+++|+ ++++..+ +.+..++.. ++.....
T Consensus       176 ~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g---~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~  245 (432)
T d1qksa2         176 EFIVNVKETGKILLVDYTDLNNLKTTEISAE---RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE  245 (432)
T ss_dssp             EEEEEETTTTEEEEEETTCSSEEEEEEEECC---SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             EEEEEEccCCeEEEEEccCCCcceEEEEccc---CccccceECCCCCEEEEeccccceEEEeecccceEEEEe
Confidence            4 444445578888888777643  444433   2345567788886 6777654 356666765 4444443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=86.47  E-value=12  Score=34.31  Aligned_cols=109  Identities=17%  Similarity=0.139  Sum_probs=63.5

Q ss_pred             CCeEEEEcCCCeEEEEeCCCCeEEEEEcC--CC-----C----CcceeeeeecCC-eEEEEEcCC---------CEEEEE
Q 006913          196 EGSIYISNTQGELYSLSAHSPYFNWIQDL--SS-----F----DKAFTLTPGNNG-YLYVTIPVR---------ALVLAL  254 (626)
Q Consensus       196 dG~LwIGT~~GgL~~ld~~tg~~~w~~~~--~s-----~----~~v~sI~~D~dG-~LwVGT~~g---------G~l~al  254 (626)
                      ++.+..++.++.++.++..++........  ..     .    .....++...++ .+|+....+         ..+..+
T Consensus       206 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~  285 (355)
T d2bbkh_         206 AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVL  285 (355)
T ss_dssp             TTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEE
T ss_pred             CCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEE
Confidence            55666667788899998888765432110  00     0    011123444455 566654321         357778


Q ss_pred             ECCCCcEEEEEecCCCCCceeeEEEeeCCe--EEEEE-cCCeEEEEcC-CCCEEEEe
Q 006913          255 DTSSGNILWHKSVGPLGSAEYAPVVDSNGW--ISVGS-LDGLLYSFSP-SGVLNKFS  307 (626)
Q Consensus       255 D~~tG~~~w~~~~~~l~~~~sspvvD~dG~--IWVGT-~~gGLy~~d~-~g~~~~~~  307 (626)
                      |..+++.......+   .....+.+.+||+  +++.. .++.|+.+|. +|+.....
T Consensus       286 d~~t~~~~~~~~~~---~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i  339 (355)
T d2bbkh_         286 DAKTGERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSV  339 (355)
T ss_dssp             ETTTCCEEEEEEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             eCCCCcEEEEecCC---CCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEE
Confidence            98889887654433   1234566777775  55543 4678999997 47766543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=86.41  E-value=12  Score=34.15  Aligned_cols=125  Identities=12%  Similarity=0.083  Sum_probs=68.1

Q ss_pred             CCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCe-EEEEcC-CC-eEEEEeCC
Q 006913          139 SSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGS-IYISNT-QG-ELYSLSAH  214 (626)
Q Consensus       139 dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~-LwIGT~-~G-gL~~ld~~  214 (626)
                      ||+++.....+.|+.+|.+ |..+ ..       +      +.   ..+ ..+...+ +|. |.++.. ++ -|+.+|.+
T Consensus        14 dG~~~a~~~~g~v~v~d~~~~~~~-~~-------~------~~---~~v-~~~~~sp-Dg~~l~~~~~~~g~~v~v~d~~   74 (360)
T d1k32a3          14 DGDLIAFVSRGQAFIQDVSGTYVL-KV-------P------EP---LRI-RYVRRGG-DTKVAFIHGTREGDFLGIYDYR   74 (360)
T ss_dssp             GGGCEEEEETTEEEEECTTSSBEE-EC-------S------CC---SCE-EEEEECS-SSEEEEEEEETTEEEEEEEETT
T ss_pred             CCCEEEEEECCeEEEEECCCCcEE-Ec-------c------CC---CCE-EEEEECC-CCCEEEEEEcCCCCEEEEEECC
Confidence            5555555556788888876 4443 21       1      00   111 3345544 554 544433 32 47788998


Q ss_pred             CCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEE
Q 006913          215 SPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWIS  286 (626)
Q Consensus       215 tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IW  286 (626)
                      +++..-...  ....+.++....||+..+.....+.++..+..++..........  .....+...++|...
T Consensus        75 ~~~~~~~~~--~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~spdg~~l  142 (360)
T d1k32a3          75 TGKAEKFEE--NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSRE--AMITDFTISDNSRFI  142 (360)
T ss_dssp             TCCEEECCC--CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS--SCCCCEEECTTSCEE
T ss_pred             CCcEEEeeC--CCceEEeeeecccccccceeccccccccccccccceeeeeeccc--ccccchhhccceeee
Confidence            887653221  22345566677788544444356788888888887654433221  123345566666543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.87  E-value=16  Score=35.23  Aligned_cols=60  Identities=10%  Similarity=0.147  Sum_probs=41.3

Q ss_pred             eCCEEEEEe--CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCe-EEEEE-CCeEEEEECCCCc
Q 006913           46 EDGKIYACS--EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGE-VYIVA-ENRVLKVDLLKIG  108 (626)
Q Consensus        46 ~dG~IwIgS--dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~-IwVgT-~ggL~~id~~~~~  108 (626)
                      ..+.+++..  ++.+..+|. +++.+..+..+.   ...++.+..||+ +|++. ++.|..+|.++++
T Consensus        30 ~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~---~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~   94 (426)
T d1hzua2          30 LPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY---AVHISRMSASGRYLLVIGRDARIDMIDLWAKE   94 (426)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCSEEEEEECCS---SEEEEEECTTSCEEEEEETTSEEEEEETTSSS
T ss_pred             CCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC---CeeEEEECCCCCEEEEEeCCCCEEEEEccCCc
Confidence            344555644  467889998 888887776542   244567778887 55555 6889999988764

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=85.16  E-value=16  Score=34.38  Aligned_cols=238  Identities=8%  Similarity=-0.032  Sum_probs=115.4

Q ss_pred             eeEEeeCC-EEEEEe-----------CCcEEEEcC-CCCEEEEEeCCCC-----CCcccCeEEecCCe-EEEEE--CCeE
Q 006913           41 KPLIGEDG-KIYACS-----------EKTLFAFES-NGTIAWSLDLDFT-----CNIGTAPVHGGTGE-VYIVA--ENRV   99 (626)
Q Consensus        41 spvid~dG-~IwIgS-----------dggL~a~d~-~G~~~W~~~~~~~-----~~i~~sp~iD~dG~-IwVgT--~ggL   99 (626)
                      .+....|| .||+.+           ++.+..+|. +++..+....+..     ......+.+..||+ ||++.  .+.+
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v  148 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeE
Confidence            45555666 467654           234889998 8888776654321     01123466777776 66665  5788


Q ss_pred             EEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeC--CCcEEEEECCccccccccccc
Q 006913          100 LKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMT--HGQLLWSAGPVLDQLGYRQGC  177 (626)
Q Consensus       100 ~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~--~G~~~w~~~~~~~~~~~~~~~  177 (626)
                      ..+|..+++.     ...... +  .  ...+   ..+........+.++.+..++.  .+...|....   . . .   
T Consensus       149 ~~~d~~~~~~-----~~~~~~-~--~--~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~---~-~-~---  207 (368)
T d1mdah_         149 AGLSVPGASD-----DQLTKS-A--S--CFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA---Q-C-T---  207 (368)
T ss_dssp             EEEEETTTEE-----EEEEEC-S--S--CCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCC---C-S-C---
T ss_pred             EEEECCCCcE-----eEEeec-c--C--cceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeec---c-c-c---
Confidence            8899887632     111110 0  0  0011   1112222222334455555553  2443333100   0 0 0   


Q ss_pred             ccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCC-------C----Ccceeeeeec-CCeEEEEE
Q 006913          178 TKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSS-------F----DKAFTLTPGN-NGYLYVTI  245 (626)
Q Consensus       178 ~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s-------~----~~v~sI~~D~-dG~LwVGT  245 (626)
                       ..  ..........+. ++.++. ..++.++.++...+...-......       .    .....++... .+.+|+..
T Consensus       208 -~~--~~~~~~~~~~~~-~g~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~  282 (368)
T d1mdah_         208 -GA--QNCSSQAAQANY-PGMLVW-AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILT  282 (368)
T ss_dssp             -TT--SCBCSCCEEETT-TTEEEE-CBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEE
T ss_pred             -cc--cccceeeccccc-CcEEEE-ecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEe
Confidence             00  000111122332 444433 345667777776655443221110       0    0011233333 45778765


Q ss_pred             cCC--------CEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCe--EEEEEc-CCeEEEEcCC-CCEEEEe
Q 006913          246 PVR--------ALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGW--ISVGSL-DGLLYSFSPS-GVLNKFS  307 (626)
Q Consensus       246 ~~g--------G~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~--IWVGT~-~gGLy~~d~~-g~~~~~~  307 (626)
                      ..+        ..+..+|..+++.......+   .....+.+.+||+  +|+... ++.|+.+|.. |+.....
T Consensus       283 ~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~---~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i  353 (368)
T d1mdah_         283 VEHSRSCLAAAENTSSVTASVGQTSGPISNG---HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSV  353 (368)
T ss_dssp             EECSSCTTSCEEEEEEEESSSCCEEECCEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEEC
T ss_pred             cCCCceeecCCceEEEEECCCCcEeEEecCC---CceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEE
Confidence            322        24677898888876443222   1234466777774  677654 4679999974 7665443

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.91  E-value=11  Score=32.62  Aligned_cols=185  Identities=10%  Similarity=0.020  Sum_probs=97.1

Q ss_pred             ecCCeEEE-EE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC-CcEEE
Q 006913           86 GGTGEVYI-VA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH-GQLLW  162 (626)
Q Consensus        86 D~dG~IwV-gT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~-G~~~w  162 (626)
                      +.+|+..+ |. ++.|...|..+++.     ...+.     ..... |..+. -.+..|..|+.++.+..++.. +....
T Consensus        22 ~~d~~~l~sgs~Dg~i~vWd~~~~~~-----~~~l~-----~H~~~-V~~v~-~~~~~l~s~s~D~~i~~~~~~~~~~~~   89 (293)
T d1p22a2          22 QYDDQKIVSGLRDNTIKIWDKNTLEC-----KRILT-----GHTGS-VLCLQ-YDERVIITGSSDSTVRVWDVNTGEMLN   89 (293)
T ss_dssp             ECCSSEEEEEESSSCEEEEESSSCCE-----EEEEC-----CCSSC-EEEEE-CCSSEEEEEETTSCEEEEESSSCCEEE
T ss_pred             EEcCCEEEEEeCCCeEEEEECCCCcE-----EEEEe-----cCCCC-Eeeee-cccceeecccccccccccccccccccc
Confidence            44566444 44 67788889877631     22221     12222 33222 234556677777778888865 65544


Q ss_pred             EECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEE-cC-CCCCcceeeeeecCCe
Q 006913          163 SAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQ-DL-SSFDKAFTLTPGNNGY  240 (626)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~-~~-~s~~~v~sI~~D~dG~  240 (626)
                      ....       .     .    .... .... ..+.+..+...+.+..++..+....... .. .....+..... ....
T Consensus        90 ~~~~-------~-----~----~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~  150 (293)
T d1p22a2          90 TLIH-------H-----C----EAVL-HLRF-NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-DDKY  150 (293)
T ss_dssp             EECC-------C-----C----SCEE-EEEC-CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-ETTE
T ss_pred             cccc-------c-----c----cccc-cccc-cccceeecccccceeEeecccccccccccccccccccccccee-cccc
Confidence            3210       0     0    0000 1112 2556666666777777776654432221 11 11122222222 2345


Q ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEEEEEcCCeEEEEcCC-CCEEE
Q 006913          241 LYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPS-GVLNK  305 (626)
Q Consensus       241 LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~-g~~~~  305 (626)
                      +..++ .++.+..+|..+++.........  ........+ +..+..|..++.|..+|.. +....
T Consensus       151 ~~~~s-~d~~i~~~d~~~~~~~~~~~~~~--~~v~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~  212 (293)
T d1p22a2         151 IVSAS-GDRTIKVWNTSTCEFVRTLNGHK--RGIACLQYR-DRLVVSGSSDNTIRLWDIECGACLR  212 (293)
T ss_dssp             EEEEE-TTSEEEEEETTTCCEEEEEECCS--SCEEEEEEE-TTEEEEEETTSCEEEEETTTCCEEE
T ss_pred             ccccc-CCCceeeecCCCCcEEEEEcccc--cccccccCC-CCeEEEecCCCEEEEEecccceeee
Confidence            55555 35788888988888876554331  122223333 5678888888999999875 44443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=81.92  E-value=19  Score=32.87  Aligned_cols=58  Identities=14%  Similarity=0.050  Sum_probs=39.6

Q ss_pred             eEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCe--EEEEEcCCCEEEEEECCCCcEEEEEe
Q 006913          207 ELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGY--LYVTIPVRALVLALDTSSGNILWHKS  266 (626)
Q Consensus       207 gL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~--LwVGT~~gG~l~alD~~tG~~~w~~~  266 (626)
                      .|..+|..+++.......+  ..+.+++...||+  +|+.....+.+..+|.++|+.+....
T Consensus       281 ~v~v~d~~t~~~~~~~~~~--~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~  340 (355)
T d2bbkh_         281 FVVVLDAKTGERLAKFEMG--HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN  340 (355)
T ss_dssp             EEEEEETTTCCEEEEEEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             eEEEEeCCCCcEEEEecCC--CCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEe
Confidence            5888999988776543321  1234566666775  66655455789999999999876653