Citrus Sinensis ID: 006963
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 623 | ||||||
| 255578347 | 710 | ATP binding protein, putative [Ricinus c | 0.913 | 0.801 | 0.721 | 0.0 | |
| 225424657 | 627 | PREDICTED: uncharacterized protein LOC10 | 0.963 | 0.956 | 0.661 | 0.0 | |
| 449434987 | 627 | PREDICTED: uncharacterized protein LOC10 | 0.871 | 0.866 | 0.653 | 0.0 | |
| 18408874 | 611 | chloroplast sensor kinase [Arabidopsis t | 0.926 | 0.944 | 0.636 | 0.0 | |
| 297838533 | 610 | hypothetical protein ARALYDRAFT_894541 [ | 0.882 | 0.901 | 0.659 | 0.0 | |
| 147860581 | 608 | hypothetical protein VITISV_010592 [Viti | 0.913 | 0.935 | 0.612 | 0.0 | |
| 224110864 | 473 | predicted protein [Populus trichocarpa] | 0.749 | 0.987 | 0.721 | 0.0 | |
| 356511068 | 612 | PREDICTED: uncharacterized protein LOC10 | 0.871 | 0.887 | 0.650 | 0.0 | |
| 11072033 | 610 | F12A21.3 [Arabidopsis thaliana] | 0.924 | 0.944 | 0.608 | 0.0 | |
| 109676316 | 771 | ATP-binding protein [Populus trichocarpa | 0.839 | 0.678 | 0.617 | 0.0 |
| >gi|255578347|ref|XP_002530040.1| ATP binding protein, putative [Ricinus communis] gi|223530456|gb|EEF32340.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 799 bits (2063), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/585 (72%), Positives = 477/585 (81%), Gaps = 16/585 (2%)
Query: 51 SNGTSLRH-VTRTLSNDDEPPAAGSP-MVSSASAVASAIRRTSTSPIEFLQTIETDQKRC 108
+N +SL H VTRTL N EP + P M+SSASAVASAIR TS SPIEF+Q +E K
Sbjct: 130 NNTSSLLHRVTRTLPNG-EPELSSPPEMLSSASAVASAIRNTSNSPIEFVQKMEKSDK-S 187
Query: 109 NLVLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGV-NAT 167
LVLPS DF+RLC+EQL LFRRIVDPDA+LSVYVRPAGSYVMDRLELRRV SYPG+ +A+
Sbjct: 188 KLVLPSLDFRRLCIEQLDLFRRIVDPDAILSVYVRPAGSYVMDRLELRRVTSYPGIISAS 247
Query: 168 DIVVLVGNFNMPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMEL- 226
D+V+LVG FN+P GLRAAEAAL+SQQV VP+ RAVVFPMVKHPFVVGFLVAELP MEL
Sbjct: 248 DVVILVGTFNIPTGLRAAEAALASQQVNFVPDHRAVVFPMVKHPFVVGFLVAELPTMELV 307
Query: 227 ------QMCGTEEPDAAIGFQSSEEVYAFPPSFDT-ESHAIESFDHERMRVYKFSADQRL 279
Q G E + + FQS EE Y P S D +S I++ + E R+Y FSA+QRL
Sbjct: 308 PSYENVQTKGHE--NDLVPFQSPEEAYPLPSSPDNNKSWTIQTLNDESFRMYNFSAEQRL 365
Query: 280 NAINICRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKR 339
NAINI RSLAMAYVMDQK+MLLQQSSWQNN RMSNLVEQIRGPLSSIQTLSKMLS H+KR
Sbjct: 366 NAINISRSLAMAYVMDQKAMLLQQSSWQNNVRMSNLVEQIRGPLSSIQTLSKMLSTHLKR 425
Query: 340 SEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRS 399
SEISYDIVEDIMVQGDRLR TLQELQDAV LTKANI+RYNEE L++++NS Y H ES+ S
Sbjct: 426 SEISYDIVEDIMVQGDRLRDTLQELQDAVHLTKANIMRYNEEALQRIHNSNYHHHESLGS 485
Query: 400 QLSNNFSRE-NSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGD 458
LS+N R+ + N L NS KP SL+ P D+EMPMPP+ALAPL+Q GIRPCNV +VL D
Sbjct: 486 HLSDNIPRDADDSNNLHNSGKPHSLNVPLDDLEMPMPPMALAPLQQYGIRPCNVYEVLSD 545
Query: 459 LFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSA 518
L AV+PL QQR + LSELSQSL VA+EE ALRQALSNLIEGAL+RT+VGGKVEIV
Sbjct: 546 LVGAVQPLTFKQQRNIVLSELSQSLQVAIEEQALRQALSNLIEGALLRTRVGGKVEIVCT 605
Query: 519 AAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLE 578
APAG ALV+IDDDGPDMHYMTQMHSL PFG+EL SENM+EDNMTWNFVAGLTVARE+LE
Sbjct: 606 EAPAGGALVIIDDDGPDMHYMTQMHSLAPFGAELLSENMIEDNMTWNFVAGLTVAREILE 665
Query: 579 SYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLSDLNGKSNET 623
SYGCVVR+ISP TDAALG+GGT++ELWLPS A LSDLN +ET
Sbjct: 666 SYGCVVRIISPRITDAALGTGGTQIELWLPSFAALSDLNDIVHET 710
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225424657|ref|XP_002282396.1| PREDICTED: uncharacterized protein LOC100249068 [Vitis vinifera] gi|296081359|emb|CBI16792.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449434987|ref|XP_004135277.1| PREDICTED: uncharacterized protein LOC101223159 [Cucumis sativus] gi|449520695|ref|XP_004167369.1| PREDICTED: uncharacterized LOC101223159 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|18408874|ref|NP_564908.1| chloroplast sensor kinase [Arabidopsis thaliana] gi|332196584|gb|AEE34705.1| chloroplast sensor kinase [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297838533|ref|XP_002887148.1| hypothetical protein ARALYDRAFT_894541 [Arabidopsis lyrata subsp. lyrata] gi|297332989|gb|EFH63407.1| hypothetical protein ARALYDRAFT_894541 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|147860581|emb|CAN81865.1| hypothetical protein VITISV_010592 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224110864|ref|XP_002315662.1| predicted protein [Populus trichocarpa] gi|222864702|gb|EEF01833.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356511068|ref|XP_003524253.1| PREDICTED: uncharacterized protein LOC100792515 [Glycine max] | Back alignment and taxonomy information |
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| >gi|11072033|gb|AAG28912.1|AC008113_28 F12A21.3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|109676316|gb|ABG37640.1| ATP-binding protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 623 | ||||||
| TAIR|locus:2008525 | 611 | CSK "chloroplast sensor kinase | 0.926 | 0.944 | 0.577 | 1.1e-165 |
| TAIR|locus:2008525 CSK "chloroplast sensor kinase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1612 (572.5 bits), Expect = 1.1e-165, P = 1.1e-165
Identities = 351/608 (57%), Positives = 424/608 (69%)
Query: 27 PNYHPKFCASL-NPKP-------LTTSPKSLSSNGTS-----LRHVTRTLSNDDEPXXXX 73
PN H F S+ NP+P L S S SS+ +S LR+V T+SN++
Sbjct: 16 PNLH--FSNSIPNPRPSNPSLKLLNASSSSSSSSSSSIFTRGLRYVNHTVSNEESEPGGG 73
Query: 74 XXXXXXXXXXXXXXXXXXXXPIEFLQTIETDQKRCNLVLPSPDFQRLCVEQLHLFRRIVD 133
P+EF Q IE D + ++LPSPDFQRLC+EQL LFR+IVD
Sbjct: 74 ETMVASASAIASAIRGASTTPVEFTQMIEKDHLKTKIILPSPDFQRLCLEQLDLFRQIVD 133
Query: 134 PDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVGNFNMPAGLRAAEAALSSQQ 193
P+AVLS+YVRPAGSYVMDRLELRRV YP VNA D+V+LVGNF +PAGLRAAEA+LSSQQ
Sbjct: 134 PNAVLSIYVRPAGSYVMDRLELRRVTCYPSVNAGDVVILVGNFGIPAGLRAAEASLSSQQ 193
Query: 194 VQVVPEQRAVVFPMVKHPFVVGFLVAELPLM---ELQMCGTEEPDAAIGFQSSEEVYAFP 250
V++V + RA VFPMVKHPFVVGFLVAELP+ E + E+P F S EE YA P
Sbjct: 194 VELVSKHRAAVFPMVKHPFVVGFLVAELPVEAEEEEEEEEEEKPHGVNQFLSPEEAYALP 253
Query: 251 PSFDTESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNA 310
S +T+S ++ ++V F+ +QR AINI R+LAMAYVMDQK+MLLQQSSWQNN
Sbjct: 254 ASANTKSPRVKL---PSVKV--FTEEQRSYAINISRTLAMAYVMDQKTMLLQQSSWQNNV 308
Query: 311 RMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFL 370
RMS LVEQIRGPLS+++TLSKMLS H KR++IS+DIVED++VQGD+++ TL+ELQDAV L
Sbjct: 309 RMSKLVEQIRGPLSTMRTLSKMLSTHTKRNQISHDIVEDLIVQGDQIKDTLEELQDAVHL 368
Query: 371 TKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDI 430
TKANIVR+NEE LKK+N + H E+ RS+ + + S Q S LSL + D
Sbjct: 369 TKANIVRHNEEALKKINKT---HNETRRSKYEHKDPIDGS----QISSTRLSLGSGLDDS 421
Query: 431 EXXXXXXXXXXXKQNGIRPCNVSDVLGDLFEAVRPLAHMXXXXXXXXXXXXXXXXXXXXP 490
E + + IRPC++S+VL D+ E VRPLA P
Sbjct: 422 EMPMPPLALAPLQMHSIRPCDISNVLLDMVETVRPLALTQQRVVELGENSASLQVAVEEP 481
Query: 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGS 550
ALRQALSNLIEGAL+RT VGGKVEI+S APAG +LVVIDDDGPDM YMTQMHSLTPFG+
Sbjct: 482 ALRQALSNLIEGALLRTHVGGKVEILSTRAPAGGSLVVIDDDGPDMRYMTQMHSLTPFGA 541
Query: 551 ELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS- 609
EL SENMVEDNMTWNFVAGLTVARE+LESYGCV+RVISP +DAALG+GGTRVELWLP+
Sbjct: 542 ELLSENMVEDNMTWNFVAGLTVAREILESYGCVIRVISPRSSDAALGAGGTRVELWLPAF 601
Query: 610 PAPLSDLN 617
PA +S+ N
Sbjct: 602 PAAVSEAN 609
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.132 0.384 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 623 568 0.00079 120 3 11 22 0.40 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1
No. of states in DFA: 621 (66 KB)
Total size of DFA: 307 KB (2159 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 47.43u 0.08s 47.51t Elapsed: 00:00:02
Total cpu time: 47.44u 0.08s 47.52t Elapsed: 00:00:02
Start: Sat May 11 06:42:10 2013 End: Sat May 11 06:42:12 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 623 | |||
| pfam02518 | 111 | pfam02518, HATPase_c, Histidine kinase-, DNA gyras | 6e-08 | |
| COG0642 | 336 | COG0642, BaeS, Signal transduction histidine kinas | 3e-07 | |
| PRK11100 | 475 | PRK11100, PRK11100, sensory histidine kinase CreC; | 6e-07 | |
| smart00387 | 111 | smart00387, HATPase_c, Histidine kinase-like ATPas | 3e-06 | |
| TIGR02966 | 333 | TIGR02966, phoR_proteo, phosphate regulon sensor k | 2e-05 | |
| TIGR02916 | 679 | TIGR02916, PEP_his_kin, putative PEP-CTERM system | 0.002 | |
| COG4191 | 603 | COG4191, COG4191, Signal transduction histidine ki | 0.002 |
| >gnl|CDD|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | Back alignment and domain information |
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Score = 50.8 bits (122), Expect = 6e-08
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 13/120 (10%)
Query: 489 EPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPF 548
E LRQ LSNL++ A+ GG++E+ + G + ++D+G + PF
Sbjct: 3 EDRLRQVLSNLLDNAIKHAPAGGEIEV-TLERDGGRLRITVEDNGIGIPPEDLPKIFEPF 61
Query: 549 GSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608
S V GL++ R+L+E +G + V S GGT LP
Sbjct: 62 FRTDSSSRKVG-----GTGLGLSIVRKLVELHGGTITVESE-------PGGGTTFTFTLP 109
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This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90. Length = 111 |
| >gnl|CDD|223715 COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
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| >gnl|CDD|236846 PRK11100, PRK11100, sensory histidine kinase CreC; Provisional | Back alignment and domain information |
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| >gnl|CDD|214643 smart00387, HATPase_c, Histidine kinase-like ATPases | Back alignment and domain information |
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| >gnl|CDD|234074 TIGR02966, phoR_proteo, phosphate regulon sensor kinase PhoR | Back alignment and domain information |
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| >gnl|CDD|234058 TIGR02916, PEP_his_kin, putative PEP-CTERM system histidine kinase | Back alignment and domain information |
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| >gnl|CDD|226654 COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] | Back alignment and domain information |
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Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 623 | |||
| COG2205 | 890 | KdpD Osmosensitive K+ channel histidine kinase [Si | 100.0 | |
| COG5002 | 459 | VicK Signal transduction histidine kinase [Signal | 100.0 | |
| PRK09303 | 380 | adaptive-response sensory kinase; Validated | 100.0 | |
| PRK10490 | 895 | sensor protein KdpD; Provisional | 100.0 | |
| PRK13837 | 828 | two-component VirA-like sensor kinase; Provisional | 100.0 | |
| PRK10618 | 894 | phosphotransfer intermediate protein in two-compon | 100.0 | |
| TIGR02916 | 679 | PEP_his_kin putative PEP-CTERM system histidine ki | 99.98 | |
| PRK11006 | 430 | phoR phosphate regulon sensor protein; Provisional | 99.97 | |
| PRK10841 | 924 | hybrid sensory kinase in two-component regulatory | 99.97 | |
| COG3852 | 363 | NtrB Signal transduction histidine kinase, nitroge | 99.97 | |
| COG4191 | 603 | Signal transduction histidine kinase regulating C4 | 99.97 | |
| PRK10364 | 457 | sensor protein ZraS; Provisional | 99.97 | |
| TIGR02938 | 494 | nifL_nitrog nitrogen fixation negative regulator N | 99.97 | |
| PRK11091 | 779 | aerobic respiration control sensor protein ArcB; P | 99.97 | |
| TIGR02956 | 968 | TMAO_torS TMAO reductase sytem sensor TorS. This p | 99.97 | |
| PRK15347 | 921 | two component system sensor kinase SsrA; Provision | 99.97 | |
| PRK10755 | 356 | sensor protein BasS/PmrB; Provisional | 99.97 | |
| PRK10604 | 433 | sensor protein RstB; Provisional | 99.97 | |
| PRK11466 | 914 | hybrid sensory histidine kinase TorS; Provisional | 99.96 | |
| PRK10815 | 485 | sensor protein PhoQ; Provisional | 99.96 | |
| PRK11107 | 919 | hybrid sensory histidine kinase BarA; Provisional | 99.96 | |
| PRK10549 | 466 | signal transduction histidine-protein kinase BaeS; | 99.96 | |
| PRK09835 | 482 | sensor kinase CusS; Provisional | 99.96 | |
| TIGR01386 | 457 | cztS_silS_copS heavy metal sensor kinase. Members | 99.96 | |
| PRK10337 | 449 | sensor protein QseC; Provisional | 99.96 | |
| PRK09959 | 1197 | hybrid sensory histidine kinase in two-component r | 99.96 | |
| PRK09467 | 435 | envZ osmolarity sensor protein; Provisional | 99.95 | |
| TIGR03785 | 703 | marine_sort_HK proteobacterial dedicated sortase s | 99.95 | |
| PRK11073 | 348 | glnL nitrogen regulation protein NR(II); Provision | 99.95 | |
| PRK09470 | 461 | cpxA two-component sensor protein; Provisional | 99.95 | |
| TIGR02966 | 333 | phoR_proteo phosphate regulon sensor kinase PhoR. | 99.95 | |
| COG4251 | 750 | Bacteriophytochrome (light-regulated signal transd | 99.95 | |
| PRK11360 | 607 | sensory histidine kinase AtoS; Provisional | 99.94 | |
| COG5000 | 712 | NtrY Signal transduction histidine kinase involved | 99.94 | |
| PRK11100 | 475 | sensory histidine kinase CreC; Provisional | 99.94 | |
| PRK13557 | 540 | histidine kinase; Provisional | 99.93 | |
| COG0642 | 336 | BaeS Signal transduction histidine kinase [Signal | 99.93 | |
| PRK13560 | 807 | hypothetical protein; Provisional | 99.91 | |
| PRK11086 | 542 | sensory histidine kinase DcuS; Provisional | 99.89 | |
| PRK15053 | 545 | dpiB sensor histidine kinase DpiB; Provisional | 99.89 | |
| PRK11644 | 495 | sensory histidine kinase UhpB; Provisional | 99.88 | |
| COG4192 | 673 | Signal transduction histidine kinase regulating ph | 99.86 | |
| PRK10600 | 569 | nitrate/nitrite sensor protein NarX; Provisional | 99.83 | |
| COG3290 | 537 | CitA Signal transduction histidine kinase regulati | 99.82 | |
| PRK13559 | 361 | hypothetical protein; Provisional | 99.82 | |
| PF02518 | 111 | HATPase_c: Histidine kinase-, DNA gyrase B-, and H | 99.8 | |
| PRK10935 | 565 | nitrate/nitrite sensor protein NarQ; Provisional | 99.77 | |
| PRK10547 | 670 | chemotaxis protein CheA; Provisional | 99.68 | |
| smart00387 | 111 | HATPase_c Histidine kinase-like ATPases. Histidine | 99.47 | |
| COG0643 | 716 | CheA Chemotaxis protein histidine kinase and relat | 99.44 | |
| COG3850 | 574 | NarQ Signal transduction histidine kinase, nitrate | 99.42 | |
| PRK04184 | 535 | DNA topoisomerase VI subunit B; Validated | 99.41 | |
| COG3920 | 221 | Signal transduction histidine kinase [Signal trans | 99.38 | |
| COG3851 | 497 | UhpB Signal transduction histidine kinase, glucose | 99.35 | |
| cd00075 | 103 | HATPase_c Histidine kinase-like ATPases; This fami | 99.33 | |
| PRK14868 | 795 | DNA topoisomerase VI subunit B; Provisional | 99.31 | |
| COG4585 | 365 | Signal transduction histidine kinase [Signal trans | 99.28 | |
| TIGR01925 | 137 | spIIAB anti-sigma F factor. This model describes t | 99.26 | |
| TIGR01052 | 488 | top6b DNA topoisomerase VI, B subunit. This model | 99.23 | |
| PRK03660 | 146 | anti-sigma F factor; Provisional | 99.18 | |
| PRK14867 | 659 | DNA topoisomerase VI subunit B; Provisional | 99.14 | |
| COG3275 | 557 | LytS Putative regulator of cell autolysis [Signal | 99.02 | |
| PRK04069 | 161 | serine-protein kinase RsbW; Provisional | 98.9 | |
| COG4564 | 459 | Signal transduction histidine kinase [Signal trans | 98.9 | |
| COG2972 | 456 | Predicted signal transduction protein with a C-ter | 98.83 | |
| TIGR01924 | 159 | rsbW_low_gc serine-protein kinase RsbW. This model | 98.81 | |
| PF14501 | 100 | HATPase_c_5: GHKL domain | 98.79 | |
| KOG0787 | 414 | consensus Dehydrogenase kinase [Signal transductio | 98.7 | |
| KOG0519 | 786 | consensus Sensory transduction histidine kinase [S | 98.69 | |
| PF00512 | 68 | HisKA: His Kinase A (phospho-acceptor) domain; Int | 98.61 | |
| PF13581 | 125 | HATPase_c_2: Histidine kinase-like ATPase domain | 98.28 | |
| COG1389 | 538 | DNA topoisomerase VI, subunit B [DNA replication, | 98.08 | |
| TIGR00585 | 312 | mutl DNA mismatch repair protein MutL. All protein | 98.04 | |
| COG2172 | 146 | RsbW Anti-sigma regulatory factor (Ser/Thr protein | 97.99 | |
| smart00388 | 66 | HisKA His Kinase A (phosphoacceptor) domain. Dimer | 97.8 | |
| cd00082 | 65 | HisKA Histidine Kinase A (dimerization/phosphoacce | 97.76 | |
| PRK00095 | 617 | mutL DNA mismatch repair protein; Reviewed | 97.33 | |
| PF13589 | 137 | HATPase_c_3: Histidine kinase-, DNA gyrase B-, and | 97.2 | |
| PF13492 | 129 | GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_ | 96.91 | |
| TIGR01817 | 534 | nifA Nif-specific regulatory protein. This model r | 96.62 | |
| PRK05559 | 631 | DNA topoisomerase IV subunit B; Reviewed | 96.26 | |
| COG0323 | 638 | MutL DNA mismatch repair enzyme (predicted ATPase) | 95.99 | |
| PF01590 | 154 | GAF: GAF domain; InterPro: IPR003018 This domain i | 95.65 | |
| TIGR01059 | 654 | gyrB DNA gyrase, B subunit. This model describes t | 95.61 | |
| PRK05218 | 613 | heat shock protein 90; Provisional | 95.56 | |
| PF13185 | 148 | GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_ | 95.09 | |
| PRK14083 | 601 | HSP90 family protein; Provisional | 94.77 | |
| PRK05644 | 638 | gyrB DNA gyrase subunit B; Validated | 94.6 | |
| smart00065 | 149 | GAF Domain present in phytochromes and cGMP-specif | 94.35 | |
| TIGR01055 | 625 | parE_Gneg DNA topoisomerase IV, B subunit, proteob | 93.84 | |
| PRK11061 | 748 | fused phosphoenolpyruvate-protein phosphotransfera | 93.36 | |
| smart00433 | 594 | TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras | 93.1 | |
| PRK15429 | 686 | formate hydrogenlyase transcriptional activator Fh | 91.91 | |
| KOG1979 | 694 | consensus DNA mismatch repair protein - MLH1 famil | 91.91 | |
| PRK14939 | 756 | gyrB DNA gyrase subunit B; Provisional | 91.37 | |
| PTZ00130 | 814 | heat shock protein 90; Provisional | 90.9 | |
| PRK05022 | 509 | anaerobic nitric oxide reductase transcription reg | 90.8 | |
| COG1956 | 163 | GAF domain-containing protein [Signal transduction | 90.25 | |
| PTZ00272 | 701 | heat shock protein 83 kDa (Hsp83); Provisional | 89.68 | |
| PLN03237 | 1465 | DNA topoisomerase 2; Provisional | 89.53 | |
| COG5385 | 214 | Uncharacterized protein conserved in bacteria [Fun | 89.41 | |
| PF10090 | 182 | DUF2328: Uncharacterized protein conserved in bact | 88.25 | |
| COG0326 | 623 | HtpG Molecular chaperone, HSP90 family [Posttransl | 87.84 | |
| TIGR01058 | 637 | parE_Gpos DNA topoisomerase IV, B subunit, Gram-po | 84.93 | |
| KOG1978 | 672 | consensus DNA mismatch repair protein - MLH2/PMS1/ | 84.11 | |
| PTZ00108 | 1388 | DNA topoisomerase 2-like protein; Provisional | 83.78 | |
| COG3605 | 756 | PtsP Signal transduction protein containing GAF an | 83.72 | |
| COG5381 | 184 | Uncharacterized protein conserved in bacteria [Fun | 82.74 | |
| COG2203 | 175 | FhlA FOG: GAF domain [Signal transduction mechanis | 80.37 |
| >COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-38 Score=347.96 Aligned_cols=346 Identities=17% Similarity=0.217 Sum_probs=261.2
Q ss_pred HHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceEEEEeecCCCCCcCeeeeccccccCcchhhhhhhhhcccccC
Q 006963 117 FQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVGNFNMPAGLRAAEAALSSQQVQV 196 (623)
Q Consensus 117 f~~l~~~ql~~~~~~~~~~a~~~vYl~~~~~~~~~~~~l~~v~~yp~~~~~~~~~l~g~~~~~~~~~~~~~~l~~~~~~~ 196 (623)
-..+...-...+...+ +.+..+|+.+.+. .+ +-+.||..-. ..-.-+.+|.+-.+.. .-.+.++
T Consensus 525 ~~~vl~~~~~qi~~~~--~~~v~i~l~~~~~------~~-~~~~~~~~l~-~~d~aaa~W~~~~~~~------AG~gTdT 588 (890)
T COG2205 525 REDILAAAGQQIASLL--NQRVVILLPDDNG------KL-QPLGNPDGLS-ADDRAAAQWAFENGKP------AGAGTDT 588 (890)
T ss_pred HHHHHHHHHHHHHHHh--CCceEEEEecCCc------cc-ccccCCcccc-HHHHHHhhchhhCCCc------cccCCCC
Confidence 3445555556666666 6667799998332 23 4455665310 0000133333333222 1245568
Q ss_pred CCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCccccchhccchhhhhhhcccCHH
Q 006963 197 VPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSAD 276 (623)
Q Consensus 197 ~~~~~~lv~PL~~~~~v~G~Lv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~e~~~i~~~~~e~~~~~~f~~e 276 (623)
+|..+.+++|+...+.++|++.++. . . ++ .+..+
T Consensus 589 lpg~~~~~lPl~~~~~~~gvlgv~~-----------~-~---------~~-------------------------ll~p~ 622 (890)
T COG2205 589 LPGAKYLYLPLKSGGKVLGVLGVEP-----------G-L---------SP-------------------------LLAPE 622 (890)
T ss_pred CCCCceeEeecccCCceEEEEEecC-----------C-C---------Cc-------------------------cCChH
Confidence 9999999999999999999999993 1 0 11 03457
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhhhcC--CcchHHHHH
Q 006963 277 QRLNAINICRSLAMAYVMDQKSMLLQQ------SSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKR--SEISYDIVE 348 (623)
Q Consensus 277 ~r~~~~~ia~~lalA~~l~q~~~~lqq------~~~q~~e~la~lsHELRtPLtaI~~~a~lL~~~l~~--~~~~~~~~e 348 (623)
++..+.+++.++|+|....+-....++ ..+-.+.+++.+|||||||||+|.|.+..|...... .+...+.+.
T Consensus 623 ~~rlL~a~~~q~AlAler~~L~~~~~~a~l~~e~E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~~~l~~~~~aeLl~ 702 (890)
T COG2205 623 QRRLLDAVLTQIALALERVTLAEEAEQARLAAERERLRSALLASISHDLRTPLTAIMGAAETLLLDGEALSPEDRAELLS 702 (890)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcHHHHhhhHHHhhhcccccCcHhHHHHHH
Confidence 778888999999888744322222222 222238899999999999999999999999876543 344678999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCcc
Q 006963 349 DIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAK 428 (623)
Q Consensus 349 ~I~~e~~rL~~ll~~L~~~l~l~~~~I~~~~~e~l~~i~~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~ 428 (623)
.|..++++|..++.+|.+.-.
T Consensus 703 ~I~ees~~L~rlV~NLLdmTR----------------------------------------------------------- 723 (890)
T COG2205 703 SIREESERLTRLVTNLLDMTR----------------------------------------------------------- 723 (890)
T ss_pred HHHHHHHHHHHHHHHHHhHHH-----------------------------------------------------------
Confidence 999999999999999965321
Q ss_pred ccCCCCCccccccCCCC----CceeeeHHHHHHHHHHHHHHHhhhcCCeEEEEecCCceEEEeCHHHHHHHHHHHHHHHH
Q 006963 429 DIEMPMPPLALAPLKQN----GIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGAL 504 (623)
Q Consensus 429 ~~~~~~ppL~La~~e~~----~~~~v~L~ell~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAl 504 (623)
++++ +.++..+.+++..++..+.... .+..+.+..+.+...+.+|...|.|||.|||+||+
T Consensus 724 -------------i~sG~~~l~~~~~~veEvVg~Al~r~~k~~--~~~~i~v~~~~dl~li~~D~~LieQVLiNLleNA~ 788 (890)
T COG2205 724 -------------LQSGGVNLKLDWVLVEEVVGEALQRLRKRF--TGHKIVVSVPVDLPLIHVDSPLIEQVLINLLENAL 788 (890)
T ss_pred -------------HhcCCcccccchhhHHHHHHHHHHHhhhhc--CCceEEEecCCCCceEecCHHHHHHHHHHHHHHHH
Confidence 1111 3678899999999999998877 45667777677778999999999999999999999
Q ss_pred hhcCCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEE
Q 006963 505 MRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVV 584 (623)
Q Consensus 505 k~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I 584 (623)
||+|++.+|.|.+. ...+.+.+.|+|+|+|||++++++||++||++.... .+.|+||||+||+.|++.|||+|
T Consensus 789 Kyap~~s~I~I~~~-~~~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~~------~~~G~GLGLsIc~~iv~ahgG~I 861 (890)
T COG2205 789 KYAPPGSEIRINAG-VERENVVFSVIDEGPGIPEGELERIFDKFYRGNKES------ATRGVGLGLAICRGIVEAHGGTI 861 (890)
T ss_pred hhCCCCCeEEEEEE-EecceEEEEEEeCCCCCChhHHHHhhhhhhcCCCCC------CCCCccccHHHHHHHHHHcCCeE
Confidence 99999999999998 667889999999999999999999999999975311 14599999999999999999999
Q ss_pred EEEeCCCccCcCCCCeEEEEEEecCCCC
Q 006963 585 RVISPWKTDAALGSGGTRVELWLPSPAP 612 (623)
Q Consensus 585 ~v~S~~~~~~~~g~~GT~f~I~LP~~~~ 612 (623)
++.+.. .+|++|.+.||....
T Consensus 862 ~a~~~~-------~gGa~f~~~LP~~~~ 882 (890)
T COG2205 862 SAENNP-------GGGAIFVFTLPVEED 882 (890)
T ss_pred EEEEcC-------CCceEEEEEeecCCC
Confidence 999964 469999999999753
|
|
| >COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK09303 adaptive-response sensory kinase; Validated | Back alignment and domain information |
|---|
| >PRK10490 sensor protein KdpD; Provisional | Back alignment and domain information |
|---|
| >PRK13837 two-component VirA-like sensor kinase; Provisional | Back alignment and domain information |
|---|
| >PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional | Back alignment and domain information |
|---|
| >TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase | Back alignment and domain information |
|---|
| >PRK11006 phoR phosphate regulon sensor protein; Provisional | Back alignment and domain information |
|---|
| >PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional | Back alignment and domain information |
|---|
| >COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10364 sensor protein ZraS; Provisional | Back alignment and domain information |
|---|
| >TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL | Back alignment and domain information |
|---|
| >PRK11091 aerobic respiration control sensor protein ArcB; Provisional | Back alignment and domain information |
|---|
| >TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS | Back alignment and domain information |
|---|
| >PRK15347 two component system sensor kinase SsrA; Provisional | Back alignment and domain information |
|---|
| >PRK10755 sensor protein BasS/PmrB; Provisional | Back alignment and domain information |
|---|
| >PRK10604 sensor protein RstB; Provisional | Back alignment and domain information |
|---|
| >PRK11466 hybrid sensory histidine kinase TorS; Provisional | Back alignment and domain information |
|---|
| >PRK10815 sensor protein PhoQ; Provisional | Back alignment and domain information |
|---|
| >PRK11107 hybrid sensory histidine kinase BarA; Provisional | Back alignment and domain information |
|---|
| >PRK10549 signal transduction histidine-protein kinase BaeS; Provisional | Back alignment and domain information |
|---|
| >PRK09835 sensor kinase CusS; Provisional | Back alignment and domain information |
|---|
| >TIGR01386 cztS_silS_copS heavy metal sensor kinase | Back alignment and domain information |
|---|
| >PRK10337 sensor protein QseC; Provisional | Back alignment and domain information |
|---|
| >PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional | Back alignment and domain information |
|---|
| >PRK09467 envZ osmolarity sensor protein; Provisional | Back alignment and domain information |
|---|
| >TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase | Back alignment and domain information |
|---|
| >PRK11073 glnL nitrogen regulation protein NR(II); Provisional | Back alignment and domain information |
|---|
| >PRK09470 cpxA two-component sensor protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR | Back alignment and domain information |
|---|
| >COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK11360 sensory histidine kinase AtoS; Provisional | Back alignment and domain information |
|---|
| >COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK11100 sensory histidine kinase CreC; Provisional | Back alignment and domain information |
|---|
| >PRK13557 histidine kinase; Provisional | Back alignment and domain information |
|---|
| >COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK13560 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK11086 sensory histidine kinase DcuS; Provisional | Back alignment and domain information |
|---|
| >PRK15053 dpiB sensor histidine kinase DpiB; Provisional | Back alignment and domain information |
|---|
| >PRK11644 sensory histidine kinase UhpB; Provisional | Back alignment and domain information |
|---|
| >COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10600 nitrate/nitrite sensor protein NarX; Provisional | Back alignment and domain information |
|---|
| >COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK13559 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
|---|
| >PRK10935 nitrate/nitrite sensor protein NarQ; Provisional | Back alignment and domain information |
|---|
| >PRK10547 chemotaxis protein CheA; Provisional | Back alignment and domain information |
|---|
| >smart00387 HATPase_c Histidine kinase-like ATPases | Back alignment and domain information |
|---|
| >COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK04184 DNA topoisomerase VI subunit B; Validated | Back alignment and domain information |
|---|
| >COG3920 Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
|---|
| >PRK14868 DNA topoisomerase VI subunit B; Provisional | Back alignment and domain information |
|---|
| >COG4585 Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >TIGR01925 spIIAB anti-sigma F factor | Back alignment and domain information |
|---|
| >TIGR01052 top6b DNA topoisomerase VI, B subunit | Back alignment and domain information |
|---|
| >PRK03660 anti-sigma F factor; Provisional | Back alignment and domain information |
|---|
| >PRK14867 DNA topoisomerase VI subunit B; Provisional | Back alignment and domain information |
|---|
| >COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK04069 serine-protein kinase RsbW; Provisional | Back alignment and domain information |
|---|
| >COG4564 Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >TIGR01924 rsbW_low_gc serine-protein kinase RsbW | Back alignment and domain information |
|---|
| >PF14501 HATPase_c_5: GHKL domain | Back alignment and domain information |
|---|
| >KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] | Back alignment and domain information |
|---|
| >PF13581 HATPase_c_2: Histidine kinase-like ATPase domain | Back alignment and domain information |
|---|
| >COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >TIGR00585 mutl DNA mismatch repair protein MutL | Back alignment and domain information |
|---|
| >COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >smart00388 HisKA His Kinase A (phosphoacceptor) domain | Back alignment and domain information |
|---|
| >cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase | Back alignment and domain information |
|---|
| >PRK00095 mutL DNA mismatch repair protein; Reviewed | Back alignment and domain information |
|---|
| >PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B | Back alignment and domain information |
|---|
| >PF13492 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_A | Back alignment and domain information |
|---|
| >TIGR01817 nifA Nif-specific regulatory protein | Back alignment and domain information |
|---|
| >PRK05559 DNA topoisomerase IV subunit B; Reviewed | Back alignment and domain information |
|---|
| >COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases | Back alignment and domain information |
|---|
| >TIGR01059 gyrB DNA gyrase, B subunit | Back alignment and domain information |
|---|
| >PRK05218 heat shock protein 90; Provisional | Back alignment and domain information |
|---|
| >PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A | Back alignment and domain information |
|---|
| >PRK14083 HSP90 family protein; Provisional | Back alignment and domain information |
|---|
| >PRK05644 gyrB DNA gyrase subunit B; Validated | Back alignment and domain information |
|---|
| >smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases | Back alignment and domain information |
|---|
| >TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial | Back alignment and domain information |
|---|
| >PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional | Back alignment and domain information |
|---|
| >smart00433 TOP2c TopoisomeraseII | Back alignment and domain information |
|---|
| >PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional | Back alignment and domain information |
|---|
| >KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK14939 gyrB DNA gyrase subunit B; Provisional | Back alignment and domain information |
|---|
| >PTZ00130 heat shock protein 90; Provisional | Back alignment and domain information |
|---|
| >PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional | Back alignment and domain information |
|---|
| >COG1956 GAF domain-containing protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional | Back alignment and domain information |
|---|
| >PLN03237 DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
| >COG5385 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >PF10090 DUF2328: Uncharacterized protein conserved in bacteria (DUF2328); InterPro: IPR018762 Members of this family of hypothetical bacterial proteins have no known function | Back alignment and domain information |
|---|
| >COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive | Back alignment and domain information |
|---|
| >KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PTZ00108 DNA topoisomerase 2-like protein; Provisional | Back alignment and domain information |
|---|
| >COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG5381 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >COG2203 FhlA FOG: GAF domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A Length = 152 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 8e-13
Identities = 34/177 (19%), Positives = 64/177 (36%), Gaps = 37/177 (20%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGALMR 506
V+ +L +L A+ + Q++ V +S ++S + E+ + + N+++ A
Sbjct: 2 ELHPVAPLLDNLTSALNKVY--QRKGVNISLDISPEISFVGEQNDFVEVMGNVLDNACKY 59
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPF--------GSELFSENMV 558
VE +SA +V++DDGP + + G +
Sbjct: 60 CL--EFVE-ISARQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTLRPGQGV------ 110
Query: 559 EDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLSD 615
GL VARE+ E Y + ++ L GG R+E+
Sbjct: 111 ----------GLAVAREITEQYEGKIVA-----GESML--GGARMEVIFGRQHSAPK 150
|
| >1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A Length = 150 | Back alignment and structure |
|---|
| >1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 Length = 161 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} Length = 222 | Back alignment and structure |
|---|
| >4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} Length = 268 | Back alignment and structure |
|---|
| >2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* Length = 258 | Back alignment and structure |
|---|
| >3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A Length = 152 | Back alignment and structure |
|---|
| >3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} Length = 349 | Back alignment and structure |
|---|
| >3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} Length = 244 | Back alignment and structure |
|---|
| >2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* Length = 394 | Back alignment and structure |
|---|
| >3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} Length = 177 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 623 | |||
| 2c2a_A | 258 | Sensor histidine kinase; phosphotransfer, PHOQ, se | 100.0 | |
| 4ew8_A | 268 | Sensor protein DIVL; signal transduction, two-comp | 100.0 | |
| 3d36_A | 244 | Sporulation kinase B; GHKL ATPase, four helix bund | 100.0 | |
| 3jz3_A | 222 | Sensor protein QSEC; helix-turn-helix, kinase doma | 100.0 | |
| 3a0r_A | 349 | Sensor protein; four helix bundle, PAS fold, kinas | 99.97 | |
| 4fpp_A | 247 | Phosphotransferase; four helix bundle, bergerat fo | 99.97 | |
| 2btz_A | 394 | Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo | 99.97 | |
| 2e0a_A | 394 | Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP | 99.97 | |
| 1gkz_A | 388 | [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] | 99.97 | |
| 2q8g_A | 407 | [pyruvate dehydrogenase [lipoamide]] kinase isozy; | 99.97 | |
| 1y8o_A | 419 | [pyruvate dehydrogenase [lipoamide]] kinase isozy; | 99.97 | |
| 1b3q_A | 379 | Protein (chemotaxis protein CHEA); histine kinase, | 99.92 | |
| 1id0_A | 152 | PHOQ histidine kinase; PHOQ/PHOP, signal transduct | 99.92 | |
| 1ysr_A | 150 | Sensor-type histidine kinase PRRB; ATP-binding dom | 99.92 | |
| 3a0y_A | 152 | Sensor protein; ATP-LID, kinase, phosphoprotein, t | 99.92 | |
| 3sl2_A | 177 | Sensor histidine kinase YYCG; ATP binding, intact | 99.91 | |
| 1bxd_A | 161 | ENVZ(290-450), protein (osmolarity sensor protein | 99.9 | |
| 1r62_A | 160 | Nitrogen regulation protein NR(II); PII, histidine | 99.89 | |
| 3ehh_A | 218 | Sensor kinase (YOCF protein); four-helix bundle, G | 99.89 | |
| 1i58_A | 189 | Chemotaxis protein CHEA; beta-alpha sandwich, sign | 99.88 | |
| 3ehg_A | 128 | Sensor kinase (YOCF protein); GHL ATPase domain, t | 99.78 | |
| 3zxo_A | 129 | Redox sensor histidine kinase response regulator; | 99.77 | |
| 3zxq_A | 124 | Hypoxia sensor histidine kinase response regulato; | 99.73 | |
| 1th8_A | 145 | Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-s | 99.68 | |
| 1mu5_A | 471 | Type II DNA topoisomerase VI subunit B; GHKL ATPas | 99.59 | |
| 2zbk_B | 530 | Type 2 DNA topoisomerase 6 subunit B; DNA binding | 99.57 | |
| 2q2e_B | 621 | Type 2 DNA topoisomerase 6 subunit B; DNA-binding, | 99.41 | |
| 1h7s_A | 365 | PMS1 protein homolog 2; DNA repair, GHL ATPase, mi | 98.62 | |
| 1kij_A | 390 | DNA gyrase subunit B; topoisomerase, gyrase B-coum | 98.46 | |
| 1b63_A | 333 | MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A | 98.43 | |
| 3na3_A | 348 | DNA mismatch repair protein MLH1; MUTL protein hom | 98.38 | |
| 3ke6_A | 399 | Protein RV1364C/MT1410; anti-sigma factor, anti-si | 98.37 | |
| 3h4l_A | 367 | DNA mismatch repair protein PMS1; ATP binding, DNA | 98.19 | |
| 1ixm_A | 192 | SPO0B, protein (sporulation response regulatory pr | 98.08 | |
| 3zcc_A | 114 | HAMP, osmolarity sensor protein ENVZ; signaling pr | 97.95 | |
| 2wer_A | 220 | ATP-dependent molecular chaperone HSP82; ATPase, A | 97.84 | |
| 2ior_A | 235 | Chaperone protein HTPG; heat shock protein, HSP90; | 97.52 | |
| 1qy5_A | 269 | Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N | 97.47 | |
| 1yc1_A | 264 | HSP 86, heat shock protein HSP 90-alpha; cell-cycl | 97.47 | |
| 3mmh_A | 167 | FRMSR, methionine-R-sulfoxide reductase; oxidoredu | 97.3 | |
| 1s16_A | 390 | Topoisomerase IV subunit B; two-domain protein com | 97.25 | |
| 3o5y_A | 165 | Sensor protein; GAF domain, histidine, kinase, PSI | 97.09 | |
| 3zrx_A | 115 | AF1503 protein, osmolarity sensor protein ENVZ; si | 97.09 | |
| 3trc_A | 171 | Phosphoenolpyruvate-protein phosphotransferase; si | 97.04 | |
| 2zmf_A | 189 | CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho | 97.0 | |
| 3ksh_A | 160 | Putative uncharacterized protein; FRMSR, free-Met- | 96.97 | |
| 3t0h_A | 228 | Heat shock protein HSP 90-alpha; chaperone, ATPase | 96.95 | |
| 3oov_A | 169 | Methyl-accepting chemotaxis protein, putative; str | 96.91 | |
| 1vhm_A | 195 | Protein YEBR; structural genomics, unknown functio | 96.89 | |
| 3e0y_A | 181 | Conserved domain protein; APC87688.2, geobacter su | 96.87 | |
| 3hcy_A | 151 | Putative two-component sensor histidine kinase PR; | 96.82 | |
| 3k2n_A | 177 | Sigma-54-dependent transcriptional regulator; PSI- | 96.76 | |
| 4glq_A | 171 | Methyl-accepting chemotaxis protein; chromophore, | 96.71 | |
| 3ci6_A | 171 | Phosphoenolpyruvate-protein phosphotransferase; PE | 96.69 | |
| 3rfb_A | 171 | Putative uncharacterized protein; FRMSR, GAF, oxid | 96.69 | |
| 1y4s_A | 559 | Chaperone protein HTPG; HSP90, molecular chaperone | 96.63 | |
| 3p01_A | 184 | Two-component response regulator; PSI-2, midwest c | 96.57 | |
| 2e4s_A | 189 | CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod | 96.51 | |
| 1ei1_A | 391 | DNA gyrase B, GYRB; ATPase domain, dimer, isomeras | 96.5 | |
| 2w3g_A | 153 | DOSS, two component sensor histidine kinase DEVS ( | 96.48 | |
| 2cg9_A | 677 | ATP-dependent molecular chaperone HSP82; chaperone | 96.31 | |
| 1zxm_A | 400 | TOPO IIA ATPase, DNA topoisomerase II, alpha isozy | 96.29 | |
| 3peh_A | 281 | Endoplasmin homolog; structural genomics, structur | 96.25 | |
| 2vjw_A | 149 | GAF-B, GAF family protein; histidine kinase, hypox | 96.23 | |
| 1mc0_A | 368 | 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF | 96.13 | |
| 3dba_A | 180 | CONE CGMP-specific 3',5'-cyclic phosphodiesterase | 96.11 | |
| 2o1u_A | 666 | Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, | 96.05 | |
| 3fv5_A | 201 | DNA topoisomerase 4 subunit B; topoisomerase IV B | 96.05 | |
| 2ioq_A | 624 | Chaperone protein HTPG; heat shock protein, HSP90; | 95.91 | |
| 2gqp_A | 236 | Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, | 95.85 | |
| 4emv_A | 226 | DNA topoisomerase IV, B subunit; protein-inhibitor | 95.83 | |
| 1f5m_A | 180 | GAF; CGMP binding, signaling protein; 1.90A {Sacch | 95.8 | |
| 1pvg_A | 418 | DNA topoisomerase II; GHKL ATPase domain; HET: DNA | 95.79 | |
| 4duh_A | 220 | DNA gyrase subunit B; structure-based drug design, | 95.63 | |
| 2qyb_A | 181 | Membrane protein, putative; GAF domain, domain of | 95.6 | |
| 3zq5_A | 520 | Phytochrome-like protein CPH1; arginine finger, ta | 95.58 | |
| 1ykd_A | 398 | Adenylate cyclase; GAF domain, bound cyclic AMP li | 95.38 | |
| 2lb5_A | 208 | Sensor histidine kinase; PCB, transferase, GAF dom | 95.33 | |
| 3ttz_A | 198 | DNA gyrase subunit B; protein-inhibitor complex, A | 95.16 | |
| 3nhq_A | 505 | Bacteriophytochrome; photoreceptor, PAS, signaling | 95.13 | |
| 3cwv_A | 369 | DNA gyrase, B subunit, truncated; structural genom | 94.66 | |
| 3ibj_A | 691 | CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE | 94.41 | |
| 1ykd_A | 398 | Adenylate cyclase; GAF domain, bound cyclic AMP li | 94.38 | |
| 2ool_A | 337 | Sensor protein; bacteriophytochrome, photoconversi | 94.31 | |
| 3ibj_A | 691 | CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE | 94.29 | |
| 3o0i_A | 256 | HSP90AA1 protein; HSP90 heat-shock proteins, chape | 94.25 | |
| 3ied_A | 272 | Heat shock protein; HSP90, chaperone, structural g | 94.12 | |
| 4eho_A | 635 | Bacteriophytochrome, PAS/PAC sensor; photoreceptor | 93.83 | |
| 1mc0_A | 368 | 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF | 93.69 | |
| 3lnu_A | 408 | Topoisomerase IV subunit B; PARE, ATP-binding, nuc | 93.42 | |
| 3cit_A | 160 | Sensor histidine kinase; MEGA: 3.30.450.40, struct | 93.25 | |
| 3nmq_A | 239 | Heat shock protein HSP 90-beta; ATPase, chaperone- | 93.04 | |
| 4e04_A | 327 | Bacteriophytochrome (light-regulated signal trans | 92.13 | |
| 3s7o_A | 343 | Bacteriophytochrome; biliverdin, PAS, GAF, photore | 91.88 | |
| 2k2n_A | 172 | Sensor protein, SYB-CPH1(GAF); phytochrome, GAF do | 91.59 | |
| 4gfh_A | 1177 | DNA topoisomerase 2; topoisomerase, protein-DNA co | 90.74 | |
| 3eea_A | 162 | GAF domain/HD domain protein; structural genomics, | 89.62 |
| >2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=292.02 Aligned_cols=233 Identities=19% Similarity=0.278 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhhhcC--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhh
Q 006963 300 LLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKR--SEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVR 377 (623)
Q Consensus 300 ~lqq~~~q~~e~la~lsHELRtPLtaI~~~a~lL~~~l~~--~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~~~I~~ 377 (623)
.+++..+.+.+|+++++|||||||++|.+++++|...... .+..+++++.|..++++|.++++++.++..+...
T Consensus 12 ~l~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~---- 87 (258)
T 2c2a_A 12 RLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERK---- 87 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC----
Confidence 3445555668999999999999999999999999876532 3456788999999999999999999654221000
Q ss_pred hhHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeHHHHHH
Q 006963 378 YNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLG 457 (623)
Q Consensus 378 ~~~e~l~~i~~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L~ell~ 457 (623)
......+++++.++++
T Consensus 88 ----------------------------------------------------------------~~~~~~~~~~l~~~~~ 103 (258)
T 2c2a_A 88 ----------------------------------------------------------------SLQINREKVDLCDLVE 103 (258)
T ss_dssp ----------------------------------------------------------------CCCCCCEEEEHHHHHH
T ss_pred ----------------------------------------------------------------CccCccceecHHHHHH
Confidence 0001257899999999
Q ss_pred HHHHHHHHHhhhcCCeEEEEec-CCceEEEeCHHHHHHHHHHHHHHHHhhcCCC---CeEEEEEEEecCCeEEEEEeeCC
Q 006963 458 DLFEAVRPLAHMQQRQVELSEL-SQSLLVAVEEPALRQALSNLIEGALMRTQVG---GKVEIVSAAAPAGDALVVIDDDG 533 (623)
Q Consensus 458 ~ll~~~~~~a~~~~~~i~l~~~-~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~g---g~I~I~~~~~~~~~v~I~V~D~G 533 (623)
+++..+...+..+++.+.+... +.+..+.+|+..|.+||.|||+||+||++.+ +.|.|.+. ..++.+.|.|.|+|
T Consensus 104 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~-~~~~~~~i~V~D~G 182 (258)
T 2c2a_A 104 SAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILD-EKDGGVLIIVEDNG 182 (258)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEE-EETTEEEEEEEECS
T ss_pred HHHHHHHHHHHHcCcEEEeecCCCCCceEEeCHHHHHHHHHHHHHHHHhcCcCCCCceeEEEEEe-cCCCeEEEEEEecC
Confidence 9999999998888888887743 4556789999999999999999999998765 56888887 56678999999999
Q ss_pred CCCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecCCCC
Q 006963 534 PDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 612 (623)
Q Consensus 534 ~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~~~ 612 (623)
+||+++.++++|+|||+.+..... ...|+||||+|||++++.|||+|++.|.+ +. ||+|+|+||....
T Consensus 183 ~Gi~~~~~~~if~~f~~~~~~~~~----~~~G~GLGL~i~~~iv~~~gG~i~v~s~~------~~-Gt~f~i~lP~~~~ 250 (258)
T 2c2a_A 183 IGIPDHAKDRIFEQFYRVDSSLTY----EVPGTGLGLAITKEIVELHGGRIWVESEV------GK-GSRFFVWIPKDRA 250 (258)
T ss_dssp SCCCGGGTTGGGSTTCCCC-------------CCCTHHHHHHHHHHTTCEEEEEEET------TT-EEEEEEEEECCC-
T ss_pred CCCCHHHHHhhccccccCCCCCCC----CCCCcchHHHHHHHHHHHcCCEEEEEecC------CC-CcEEEEEeeCCCC
Confidence 999999999999999987533221 12399999999999999999999999975 54 9999999998653
|
| >4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} | Back alignment and structure |
|---|
| >3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
| >3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
| >3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} | Back alignment and structure |
|---|
| >4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A | Back alignment and structure |
|---|
| >2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* | Back alignment and structure |
|---|
| >2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* | Back alignment and structure |
|---|
| >1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* | Back alignment and structure |
|---|
| >2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A | Back alignment and structure |
|---|
| >1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* | Back alignment and structure |
|---|
| >1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A | Back alignment and structure |
|---|
| >1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A | Back alignment and structure |
|---|
| >1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A | Back alignment and structure |
|---|
| >3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A | Back alignment and structure |
|---|
| >3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} | Back alignment and structure |
|---|
| >1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 | Back alignment and structure |
|---|
| >1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3 | Back alignment and structure |
|---|
| >3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A* | Back alignment and structure |
|---|
| >1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A* | Back alignment and structure |
|---|
| >3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis} | Back alignment and structure |
|---|
| >3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* | Back alignment and structure |
|---|
| >1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* | Back alignment and structure |
|---|
| >2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} | Back alignment and structure |
|---|
| >2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} | Back alignment and structure |
|---|
| >1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* | Back alignment and structure |
|---|
| >1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 | Back alignment and structure |
|---|
| >1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* | Back alignment and structure |
|---|
| >3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A | Back alignment and structure |
|---|
| >3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A | Back alignment and structure |
|---|
| >2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A | Back alignment and structure |
|---|
| >2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} | Back alignment and structure |
|---|
| >1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* | Back alignment and structure |
|---|
| >1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* | Back alignment and structure |
|---|
| >3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0 | Back alignment and structure |
|---|
| >1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 | Back alignment and structure |
|---|
| >3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans} | Back alignment and structure |
|---|
| >3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A | Back alignment and structure |
|---|
| >3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii} | Back alignment and structure |
|---|
| >2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A* | Back alignment and structure |
|---|
| >3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ... | Back alignment and structure |
|---|
| >3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
| >1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1 | Back alignment and structure |
|---|
| >3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
| >3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
| >3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
| >4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A* | Back alignment and structure |
|---|
| >3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP} | Back alignment and structure |
|---|
| >3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
| >1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A | Back alignment and structure |
|---|
| >3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP} | Back alignment and structure |
|---|
| >1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 | Back alignment and structure |
|---|
| >2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A* | Back alignment and structure |
|---|
| >2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* | Back alignment and structure |
|---|
| >3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* | Back alignment and structure |
|---|
| >2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A | Back alignment and structure |
|---|
| >1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1 | Back alignment and structure |
|---|
| >3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus} | Back alignment and structure |
|---|
| >2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A | Back alignment and structure |
|---|
| >3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* | Back alignment and structure |
|---|
| >2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A | Back alignment and structure |
|---|
| >2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A* | Back alignment and structure |
|---|
| >4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A* | Back alignment and structure |
|---|
| >1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A* | Back alignment and structure |
|---|
| >1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* | Back alignment and structure |
|---|
| >4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A* | Back alignment and structure |
|---|
| >2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
| >3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A* | Back alignment and structure |
|---|
| >1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP} | Back alignment and structure |
|---|
| >2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A* | Back alignment and structure |
|---|
| >3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A* | Back alignment and structure |
|---|
| >3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A* | Back alignment and structure |
|---|
| >3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus} | Back alignment and structure |
|---|
| >3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens} | Back alignment and structure |
|---|
| >1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP} | Back alignment and structure |
|---|
| >2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9 | Back alignment and structure |
|---|
| >3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens} | Back alignment and structure |
|---|
| >3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A* | Back alignment and structure |
|---|
| >3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
| >1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1 | Back alignment and structure |
|---|
| >3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A* | Back alignment and structure |
|---|
| >3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
| >3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1 | Back alignment and structure |
|---|
| >4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
| >3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A* | Back alignment and structure |
|---|
| >2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A* | Back alignment and structure |
|---|
| >4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3eea_A GAF domain/HD domain protein; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; HET: PG6; 1.80A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 623 | ||||
| d1bxda_ | 161 | d.122.1.3 (A:) Histidine kinase domain of the osmo | 2e-12 | |
| d1jm6a2 | 190 | d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kin | 5e-11 | |
| d1id0a_ | 146 | d.122.1.3 (A:) Histidine kinase PhoQ domain {Esche | 9e-11 | |
| d1ysra1 | 148 | d.122.1.3 (A:299-446) Sensor-type histidine kinase | 2e-10 | |
| d2c2aa2 | 161 | d.122.1.3 (A:321-481) Sensor histidine kinase TM08 | 5e-10 | |
| d2hkja3 | 219 | d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {A | 9e-04 |
| >d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase family: Histidine kinase domain: Histidine kinase domain of the osmosensor EnvZ species: Escherichia coli [TaxId: 562]
Score = 63.0 bits (153), Expect = 2e-12
Identities = 29/166 (17%), Positives = 72/166 (43%), Gaps = 20/166 (12%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
+ +++ VLG++ A R++E + S+ V + ++++A++N++ A
Sbjct: 7 MEMADLNAVLGEVIAAESGYE----REIETALYPGSIEVKMHPLSIKRAVANMVVNAARY 62
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNF 566
G +++ S+ A ++DDGP + + H PF + + +
Sbjct: 63 G--NGWIKV-SSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSARTISGTGL---- 115
Query: 567 VAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 612
GL + + +++++ ++ + + + GG + WLP P
Sbjct: 116 --GLAIVQRIVDNHNGMLELGT------SER-GGLSIRAWLPVPVT 152
|
| >d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Length = 190 | Back information, alignment and structure |
|---|
| >d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} Length = 146 | Back information, alignment and structure |
|---|
| >d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 148 | Back information, alignment and structure |
|---|
| >d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Length = 161 | Back information, alignment and structure |
|---|
| >d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Length = 219 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 623 | |||
| d2c2aa2 | 161 | Sensor histidine kinase TM0853 {Thermotoga maritim | 99.97 | |
| d1ysra1 | 148 | Sensor-type histidine kinase PrrB {Mycobacterium t | 99.97 | |
| d1id0a_ | 146 | Histidine kinase PhoQ domain {Escherichia coli [Ta | 99.96 | |
| d1bxda_ | 161 | Histidine kinase domain of the osmosensor EnvZ {Es | 99.96 | |
| d1jm6a2 | 190 | Pyruvate dehydrogenase kinase {Rat (Rattus norvegi | 99.94 | |
| d1gkza2 | 193 | Branched-chain alpha-ketoacid dehydrogenase kinase | 99.93 | |
| d1r62a_ | 156 | Nitrogen regulation protein NtrB, C-terminal domai | 99.93 | |
| d1ixma_ | 179 | Sporulation response regulatory protein Spo0B {Bac | 99.74 | |
| d2hkja3 | 219 | Topoisomerase VI-B subunit {Archaeon Sulfolobus sh | 99.53 | |
| d1i58a_ | 189 | Histidine kinase CheA {Thermotoga maritima [TaxId: | 99.48 | |
| d1th8a_ | 139 | Anti-sigma factor spoIIab {Bacillus stearothermoph | 99.43 | |
| d1y8oa2 | 125 | Pyruvate dehydrogenase kinase {Human (Homo sapiens | 99.34 | |
| d2c2aa1 | 89 | Sensor histidine kinase TM0853 {Thermotoga maritim | 98.92 | |
| d1joya_ | 67 | EnvZ histidine kinase {Escherichia coli [TaxId: 56 | 98.54 | |
| d1h7sa2 | 203 | DNA mismatch repair protein PMS2 {Human (Homo sapi | 97.48 | |
| d1b63a2 | 218 | DNA mismatch repair protein MutL {Escherichia coli | 97.31 | |
| d1mc0a1 | 187 | 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF | 97.02 | |
| d1vhma_ | 159 | Hypothetical protein YebR {Escherichia coli [TaxId | 96.51 | |
| d1pvga2 | 239 | DNA topoisomerase II {Baker's yeast (Saccharomyces | 96.41 | |
| d1mc0a2 | 154 | 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF | 95.82 | |
| d1ei1a2 | 219 | DNA gyrase B {Escherichia coli [TaxId: 562]} | 95.65 | |
| d1kija2 | 212 | DNA gyrase B {Thermus thermophilus [TaxId: 274]} | 95.63 | |
| d2veaa1 | 196 | Phytochrome-like protein Cph1 {Synechocystis sp. p | 94.84 | |
| d2oola1 | 194 | Sensor protein PhyB2 {Rhodopseudomonas palustris [ | 93.28 | |
| d2o9ca1 | 187 | Bacteriophytochrome BphP {Deinococcus radiodurans | 93.01 | |
| d1s14a_ | 168 | Topoisomerase IV subunit B {Escherichia coli [TaxI | 92.99 | |
| d2k2na1 | 170 | Sensor protein CYB2465 {Synechococcus sp. [TaxId: | 92.87 | |
| d1f5ma_ | 176 | Hypothetical protein ykl069wp {Baker's yeast (Sacc | 92.73 | |
| d2iwxa1 | 213 | HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T | 91.79 | |
| d1uyla_ | 208 | HSP90 {Human (Homo sapiens) [TaxId: 9606]} | 91.56 | |
| d2gqpa1 | 227 | HSP90 {Dog (Canis familiaris) [TaxId: 9615]} | 90.75 | |
| d3c2wa1 | 192 | Bacteriophytochrome BphP {Pseudomonas aeruginosa [ | 90.47 |
| >d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase family: Histidine kinase domain: Sensor histidine kinase TM0853 species: Thermotoga maritima [TaxId: 2336]
Probab=99.97 E-value=1.5e-30 Score=245.32 Aligned_cols=153 Identities=18% Similarity=0.300 Sum_probs=130.6
Q ss_pred ceeeeHHHHHHHHHHHHHHHhhhcCCeEEEEe-cCCceEEEeCHHHHHHHHHHHHHHHHhhcCCCC---eEEEEEEEecC
Q 006963 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSE-LSQSLLVAVEEPALRQALSNLIEGALMRTQVGG---KVEIVSAAAPA 522 (623)
Q Consensus 447 ~~~v~L~ell~~ll~~~~~~a~~~~~~i~l~~-~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg---~I~I~~~~~~~ 522 (623)
.+++||.+++++++..++..+..+++.+.+.. .+.+..+.+|+.+|+|||.|||+||+||++.++ .|.|.+. ..+
T Consensus 4 ~e~v~l~~li~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~D~~~l~qvl~NLi~NAik~t~~~~~~~~i~i~~~-~~~ 82 (161)
T d2c2aa2 4 REKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILD-EKD 82 (161)
T ss_dssp CEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEE-EET
T ss_pred cEEECHHHHHHHHHHHHHHHHHHCCCEEEEEeCCCCCEEEEECHHHHHHHHHHHHHHHHHhhhcCCCcceeeEEEE-ecC
Confidence 57899999999999999999998899988875 345568999999999999999999999999875 5888887 566
Q ss_pred CeEEEEEeeCCCCCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEE
Q 006963 523 GDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTR 602 (623)
Q Consensus 523 ~~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~ 602 (623)
+.+.|+|.|+|+||++++++++|+|||+++...... ..|+||||+|||+|++.|||+|++.|.+ +. ||+
T Consensus 83 ~~~~i~V~D~G~GI~~~~~~~iF~~F~~~~~~~~~~----~~G~GLGL~i~k~iv~~hgG~i~v~s~~------~~-Gt~ 151 (161)
T d2c2aa2 83 GGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYE----VPGTGLGLAITKEIVELHGGRIWVESEV------GK-GSR 151 (161)
T ss_dssp TEEEEEEEECSSCCCGGGTTGGGSTTCCCC-------------CCCTHHHHHHHHHHTTCEEEEEEET------TT-EEE
T ss_pred CEEEEEEEEcCCCCCHHHHHHhhCCcEEcCCCCCCC----CCcccHHHHHHHHHHHHCCCEEEEEecC------CC-eeE
Confidence 889999999999999999999999999986443322 2499999999999999999999999986 65 999
Q ss_pred EEEEecCCC
Q 006963 603 VELWLPSPA 611 (623)
Q Consensus 603 f~I~LP~~~ 611 (623)
|+|+||...
T Consensus 152 f~i~lP~~~ 160 (161)
T d2c2aa2 152 FFVWIPKDR 160 (161)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccc
Confidence 999999753
|
| >d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} | Back information, alignment and structure |
|---|
| >d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1joya_ a.30.2.1 (A:) EnvZ histidine kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1mc0a1 d.110.2.1 (A:215-401) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1vhma_ d.110.2.1 (A:) Hypothetical protein YebR {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1mc0a2 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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| >d2veaa1 d.110.2.1 (A:131-326) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
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| >d2oola1 d.110.2.1 (A:140-333) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
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| >d2o9ca1 d.110.2.1 (A:135-321) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
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| >d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d2k2na1 d.110.2.1 (A:31-200) Sensor protein CYB2465 {Synechococcus sp. [TaxId: 1131]} | Back information, alignment and structure |
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| >d1f5ma_ d.110.2.1 (A:) Hypothetical protein ykl069wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
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| >d3c2wa1 d.110.2.1 (A:118-309) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
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