Citrus Sinensis ID: 006976

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620---
MEEEIKAEFQKNGFNFVDEGEVLKKCLTFCINYNLKPSDLVSSWEVYYLNRQLDESTVKDDEMDGFMLHLQNEQKEAIIKEEPSLHIYSSKDVDMILNDEDENIAEDILGTPPDNLKLYSDALDSTYKANANGYSSDKPSKLVTPFGRRTEKLVVKFNINNLPNTENGCIEHDDENTEDDIIKRIKTGKKCSLMVHGSGPEPGCRFMYDRTEDRFNALENRIRKHANALVSSGLYEEPTDPTVASQRTLFAVGMICCDGDGHLNDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPSGHCLIASKLVDQIPLPVDAVVDVHPSMKQALDQEIHSTVVISRPEEISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANHDFVLPQPPFDIQPPDIIHQITSLTNPGTFEANQIKVGCCTVDVLKQLSGEEMSRCSKDGTSNDRMEIYSLDISLMGPAFFFYPLYPPAEGIPLDFSLAQEALTISTIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAKGEGSGTFAEIYYHGSPEMMNASIISI
cHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccHHHHHHccccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEEEcccccccccEEEEEEcccccccEEEEEEcccccccccccccEEEEEEEcccccEEEEEEEEccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccHHHHHHHHHHHccccEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccccccccccccccccccccEEEcccccEEEEccEEEEEEcHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccccccccccccccccccHHHHccccccccEEEccccccccEEEEccccccccEEEcEEEEEcccccccccccEEEEEEEEEccccccccccccc
cHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHccccccccccccEEEEEEEEEcccccccccEEEEEEccccccccEEEEcccccccEEccccEEEEEEEccccccEEEEEEEcccccccccccccccccccccHHHHcccccccccccccEEEEEEcccccccccccHHHHHHHHHHHHccccEEEEEccccccccHHHccccccccHHHHHHHHHHHHHHHHHHHccccEEEEEEcccHHcccccccccccccHHHccccccEEEEcccEEEEEcEEEEEEccHHHHHHHcHHHHcccccccccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHccccccccEEEEEcccccHEEEEEccccccccccccEEEEccccEEccccccEEEEEEEccccccccccEEEc
MEEEIKAEFQkngfnfvdEGEVLKKCLTFCInynlkpsdlvSSWEVYYLNRQldestvkddemDGFMLHLQNEQKEAiikeepslhiysskdvdmilndedeniaedilgtppdnlkLYSDALDSTYkanangyssdkpsklvtpfgrrTEKLVVKFNInnlpntengciehddenteDDIIKRIKTgkkcslmvhgsgpepgcrfmyDRTEDRFNALENRIRKHANALvssglyeeptdptvaSQRTLFAVGMIccdgdghlndkSVLLQSsvehsggqrvrldlhklgefslfpgqvvgiegsnpsghcliasklvdqiplpvdavvdvhpsmkqALDQEIHSTVVISRPEEISMIIaagpftttdnlyfEPLKELISYAKRKQpqllillgpfvdsehpqikkgttdssfdEIFHLEILRRLQDYVEYMGSEVRAILVpsirdanhdfvlpqppfdiqppdiihqitsltnpgtfeanqikvgCCTVDVLKQLsgeemsrcskdgtsndrmeIYSLDIslmgpafffyplyppaegipldfsLAQEaltistipdiiilpsDMKYFIKVLSlggrnegeeqkkcvcvnpgrlakgegsgTFAEIyyhgspemMNASIISI
MEEEIKAefqkngfnfvdEGEVLKKCLTFCINYNLKPSDLVSSWEVYYLNRQLDESTVKDDEMDGFMLHLQNEQKEAIIKEEPSLHIYSSKDVDMILNDEDENIAEDILGTPPDNLKLYSDALDSTYKanangyssdkpsklvtpfgrRTEKLVVKFNinnlpntengciehddentEDDIIKRIktgkkcslmvhgsgpepgcrfMYDRTEDRFNALENRIRKHANAlvssglyeePTDPTVASQRTLFAVGMICCDGDGHLNDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPSGHCLIASKLVDQIPLPVDAVVDVHPSMKQALDQEIHSTVVISRPEEISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKkgttdssfdeIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANHDFVLPQPPFDIQPPDIIHQITSLTNPGTFEANQIKVGCCTVDVLKqlsgeemsrcskdgtsndRMEIYSLDISLMGPAFFFYPLYPPAEGIPLDFSLAQEALTISTipdiiilpSDMKYFIKVLSlggrnegeeqkkcvcvnpgrlakgegsgTFAEIyyhgspemmnasiisi
MEEEIKAEFQKNGFNFVDEGEVLKKCLTFCINYNLKPSDLVSSWEVYYLNRQLDESTVKDDEMDGFMLHLQNEQKEAIIKEEPSLHIYSSKDVDMILNDEDENIAEDILGTPPDNLKLYSDALDSTYKANANGYSSDKPSKLVTPFGRRTEKLVVKFNINNLPNTENGCIEHDDENTEDDIIKRIKTGKKCSLMVHGSGPEPGCRFMYDRTEDRFNALENRIRKHANALVSSGLYEEPTDPTVASQRTLFAVGMICCDGDGHLNDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPSGHCLIASKLVDQIPLPVDAVVDVHPSMKQALDQEIHSTVVISRPEEISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANHDFVLpqppfdiqppdiihqiTSLTNPGTFEANQIKVGCCTVDVLKQLSGEEMSRCSKDGTSNDRMEIYSLDISLMGpafffyplyppaEGIPLDFSLAQEALTISTIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAKGEGSGTFAEIYYHGSPEMMNASIISI
**********KNGFNFVDEGEVLKKCLTFCINYNLKPSDLVSSWEVYYLNRQLDE*********GFMLHL*******II*****LHIYSSKDVDMILN*****IAEDIL******LKLY***********************VTPFGRRTEKLVVKFNINNLPNTENGCIEH******DDIIKRIKTGKKCSLMVHGSGPEPGCRFMYDRTEDRFNALENRIRKHANALVSSGLYE****PTVASQRTLFAVGMICCDGDGHLNDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPSGHCLIASKLVDQIPLPVDAVVDVHPSMKQALDQEIHSTVVISRPEEISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQI**GTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANHDFVLPQPPFDIQPPDIIHQITSLTNPGTFEANQIKVGCCTVDVLKQL*****************MEIYSLDISLMGPAFFFYPLYPPAEGIPLDFSLAQEALTISTIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAKGEGSGTFAEIYYH*************
*EEEIKAEFQKNGFNFVDEGEVLKKCLTFCINYNLKPSDLVSSWEVYYLNRQLDESTVKDDEMDG************************************************************************************************************************************SGPEPGCRFMYDRTEDRFNALENRIRKHANALVSSG***E****TVASQRTLFAVGMICCDGDGHLNDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPSGHCLIASKLVDQIPLPVDAVV*********************RPEEISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANHDFVLPQPPFDIQPPDIIHQITSLTNPGTFEANQIKVGCCTVDVLKQLSGE***************EIYSLDISLMGPAFFFYPLYPPAEGIPLDFSLAQEALTISTIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAKGEGSGTFAEIYY***********ISI
MEEEIKAEFQKNGFNFVDEGEVLKKCLTFCINYNLKPSDLVSSWEVYYLNRQLDESTVKDDEMDGFMLHLQNEQKEAIIKEEPSLHIYSSKDVDMILNDEDENIAEDILGTPPDNLKLYSDALDSTYKANANGYSSDKPSKLVTPFGRRTEKLVVKFNINNLPNTENGCIEHDDENTEDDIIKRIKTGKKCSLMVHGSGPEPGCRFMYDRTEDRFNALENRIRKHANALVSSGLYEEPTDPTVASQRTLFAVGMICCDGDGHLNDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPSGHCLIASKLVDQIPLPVDAVVDVHPSMKQALDQEIHSTVVISRPEEISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANHDFVLPQPPFDIQPPDIIHQITSLTNPGTFEANQIKVGCCTVDVLKQLSG***********SNDRMEIYSLDISLMGPAFFFYPLYPPAEGIPLDFSLAQEALTISTIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAKGEGSGTFAEIYYHGSPEMMNASIISI
*EEEIKAEFQKNGFNFVDEGEVLKKCLTFCINYNLKPSDLVSSWEVYYLNRQLDESTVKDDEMDGFMLHLQNEQKE***********************************************************************************************************R**TGKKCSLMVHGSGPEPGCRFMYDRTEDRFNALENRIRKHANALVSSGLYEEPTDPTVASQRTLFAVGMICCDGDGHLNDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPSGHCLIASKLVDQIPLPVDAV*********************SRPEEISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANHDFVLPQPPFDIQPPDIIHQITSLTNPGTFEANQIKVGCCTVDVLKQLSGEEMSRCSK*GTSNDRMEIYSLDISLMGPAFFFYPLYPPAEGIPLDFSLAQEALTISTIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAKGEGSGTFAEIYYHGSP**********
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MEEEIKAEFQKNGFNFVDEGEVLKKCLTFCINYNLKPSDLVSSWEVYYLNRQLDESTVKDDEMDGFMLHLQNEQKEAIIKEEPSLHIYSSKDVDMILNDEDENIAEDILGTPPDNLKLYSDALDSTYKANANGYSSDKPSKLVTPFGRRTEKLVVKFNINNLPNTENGCIEHDDENTEDDIIKRIKTGKKCSLMVHGSGPEPGCRFMxxxxxxxxxxxxxxxxxxxxxLVSSGLYEEPTDPTVASQRTLFAVGMICCDGDGHLNDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPSGHCLIASKLVDQIPLPVDAVVDVHPSMKQALDQEIHSTVVISRPEEISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANHDFVLPQPPFDIQPPDIIHQITSLTNPGTFEANQIKVGCCTVDVLKQLSGEEMSRCSKDGTSNDRMEIYSLDISLMGPAFFFYPLYPPAEGIPLDFSLAQEALTISTIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAKGEGSGTFAEIYYHGSPEMMNASIISI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query623 2.2.26 [Sep-21-2011]
Q14181598 DNA polymerase alpha subu yes no 0.584 0.608 0.338 5e-57
P33611600 DNA polymerase alpha subu yes no 0.613 0.636 0.330 9e-57
O89043600 DNA polymerase alpha subu yes no 0.606 0.63 0.319 4e-56
Q58D13604 DNA polymerase alpha subu yes no 0.565 0.582 0.332 1e-50
O74946574 DNA polymerase alpha subu yes no 0.589 0.639 0.304 2e-39
Q9VB62609 DNA polymerase alpha subu yes no 0.871 0.891 0.254 1e-36
P38121705 DNA polymerase alpha subu yes no 0.536 0.473 0.275 3e-33
Q21625581 DNA polymerase alpha subu yes no 0.571 0.612 0.246 1e-20
Q54S08623 DNA polymerase alpha subu yes no 0.375 0.375 0.259 6e-16
>sp|Q14181|DPOA2_HUMAN DNA polymerase alpha subunit B OS=Homo sapiens GN=POLA2 PE=1 SV=2 Back     alignment and function desciption
 Score =  223 bits (567), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 137/405 (33%), Positives = 219/405 (54%), Gaps = 41/405 (10%)

Query: 207 MYDRTEDRFNALENRIRKHANALVSSGLYEEPTDPTVASQRTLFAVGMICCDGDGHLNDK 266
           M+ +  D    L  +I +  + L      E  T     +Q  +  +G I CD +G LN+K
Sbjct: 209 MFQKLPDIREVLTCKIEELGSELKEHYKIEAFTPLLAPAQEPVTLLGQIGCDSNGKLNNK 268

Query: 267 SVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPSGHCLIASKLVDQIPLPVD 326
           SV+L+   EHS G ++ +DL +L E+SLFPGQVV +EG N +G  L+A+KL + +PLP  
Sbjct: 269 SVILEGDREHSSGAQIPVDLSELKEYSLFPGQVVIMEGINTTGRKLVATKLYEGVPLPFY 328

Query: 327 AVVDVHPSMKQALDQEIHSTVVISRPEEISMIIAAGPFTTTDNLYFEPLKELISYAKRKQ 386
              +     +Q++                 +++A GP+TT+D++ ++PL +LI+     +
Sbjct: 329 QPTEEDADFEQSM-----------------VLVACGPYTTSDSITYDPLLDLIAVINHDR 371

Query: 387 PQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRD 446
           P + IL GPF+D++H Q++     S F++IF  + LR + +     GS +  + VPS+RD
Sbjct: 372 PDVCILFGPFLDAKHEQVENCLLTSPFEDIFK-QCLRTIIEGTRSSGSHL--VFVPSLRD 428

Query: 447 ANHDFVLPQPPF---DIQPPDIIHQITSLTNPGTFEANQIKVGCCTVDVLKQLSGEEMSR 503
            +H+ V PQPPF   D+   D   Q+  ++ P +   N +  G  + D+L  L  EE+S 
Sbjct: 429 VHHEPVYPQPPFSYSDLSRED-KKQVQFVSEPCSLSINGVIFGLTSTDLLFHLGAEEIS- 486

Query: 504 CSKDGTSNDRMEIYSLDISLMGPAFFFYPLYPPAEGIPLDFSLAQEALTISTIPDIIILP 563
            S  GTS+    I    ++       +YPLYPP E + +D+        +   PD++I+P
Sbjct: 487 -SSSGTSDRFSRILKHILTQRS----YYPLYPPQEDMAIDYESFYVYAQLPVTPDVLIIP 541

Query: 564 SDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAKGEGSGTFAEIY 608
           S+++YF+K + LG          CVCVNPGRL KG+  GTFA +Y
Sbjct: 542 SELRYFVKDV-LG----------CVCVNPGRLTKGQVGGTFARLY 575
May play an essential role at the early stage of chromosomal DNA replication by coupling the polymerase alpha/primase complex to the cellular replication machinery.
Homo sapiens (taxid: 9606)
>sp|P33611|DPOA2_MOUSE DNA polymerase alpha subunit B OS=Mus musculus GN=Pola2 PE=1 SV=2 Back     alignment and function description
>sp|O89043|DPOA2_RAT DNA polymerase alpha subunit B OS=Rattus norvegicus GN=Pola2 PE=2 SV=2 Back     alignment and function description
>sp|Q58D13|DPOA2_BOVIN DNA polymerase alpha subunit B OS=Bos taurus GN=POLA2 PE=2 SV=1 Back     alignment and function description
>sp|O74946|DPOA2_SCHPO DNA polymerase alpha subunit B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pol12 PE=1 SV=1 Back     alignment and function description
>sp|Q9VB62|DPOA2_DROME DNA polymerase alpha subunit B OS=Drosophila melanogaster GN=DNApol-alpha73 PE=1 SV=2 Back     alignment and function description
>sp|P38121|DPOA2_YEAST DNA polymerase alpha subunit B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=POL12 PE=1 SV=1 Back     alignment and function description
>sp|Q21625|DPOA2_CAEEL DNA polymerase alpha subunit B OS=Caenorhabditis elegans GN=div-1 PE=3 SV=3 Back     alignment and function description
>sp|Q54S08|DPOA2_DICDI DNA polymerase alpha subunit B OS=Dictyostelium discoideum GN=polA2 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query623
255547882621 alpha DNA polymerase, putative [Ricinus 0.993 0.996 0.726 0.0
225425850623 PREDICTED: DNA polymerase alpha subunit 0.995 0.995 0.693 0.0
297841461619 DNA polymerase alpha subunit B family [A 0.983 0.990 0.64 0.0
30697540620 DNA polymerase alpha 2 [Arabidopsis thal 0.983 0.988 0.638 0.0
26452176620 putative DNA polymerase alpha subunit [A 0.983 0.988 0.637 0.0
449439345622 PREDICTED: DNA polymerase alpha subunit 0.993 0.995 0.627 0.0
357463079616 DNA polymerase alpha subunit B [Medicago 0.980 0.991 0.628 0.0
12324682620 putative DNA polymerase alpha subunit [A 0.969 0.974 0.606 0.0
356569195606 PREDICTED: DNA polymerase alpha subunit 0.964 0.991 0.605 0.0
356538103605 PREDICTED: DNA polymerase alpha subunit 0.963 0.991 0.609 0.0
>gi|255547882|ref|XP_002514998.1| alpha DNA polymerase, putative [Ricinus communis] gi|223546049|gb|EEF47552.1| alpha DNA polymerase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  920 bits (2379), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/625 (72%), Positives = 515/625 (82%), Gaps = 6/625 (0%)

Query: 1   MEEEIKAEFQKNGFNFVDEGE-VLKKCLTFCINYNLKPSDLVSSWEVYYLNRQLDESTVK 59
           MEEEIKAEF K+GF    E E +LKKCLTFCINYNLKP+DLVSSWEVYYLNRQLDESTV+
Sbjct: 1   MEEEIKAEFNKSGFTLDHEEEQILKKCLTFCINYNLKPADLVSSWEVYYLNRQLDESTVQ 60

Query: 60  DDEMDGFMLHLQNEQKEAIIKEEPSLHIYSSKDVDMILNDEDENIAEDILGTPPD-NLKL 118
           + EMDGF+LHLQNEQKEAIIKEEP LHIYSSKDVDMILNDE E++ E++ GTP D + KL
Sbjct: 61  NGEMDGFLLHLQNEQKEAIIKEEPDLHIYSSKDVDMILNDEGEDLKEEVPGTPTDESQKL 120

Query: 119 YSDALDSTYKANANGYSSDKPSKLVTPFGRRTEKLVVKFNINNLPNTENGCIEHDDENTE 178
            S+  DS  K+  NGYSS K SK VTPFGRRT+K VVKFNINNLP+TENG  EH  EN E
Sbjct: 121 NSEPFDSIIKSTGNGYSSGKRSKHVTPFGRRTDKFVVKFNINNLPDTENGDNEHVRENME 180

Query: 179 DDIIKRIKTGKKCSLMVHGSGPEPGCRFMYDRTEDRFNALENRIRKHANALVSSGLYEEP 238
           DDIIKR++  KKCS +VHGSGPEPGCRFMYDR EDRFNAL+NRIRKHA ALV+SGLYEEP
Sbjct: 181 DDIIKRVQPRKKCSFVVHGSGPEPGCRFMYDRIEDRFNALDNRIRKHAAALVASGLYEEP 240

Query: 239 TDPTVASQRTLFAVGMICCDGDGHLNDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQ 298
           TDPTVASQR +FAVGMICCDG+G LN+KSVLLQSS+EHSGGQRV LDLH L +FS+FPGQ
Sbjct: 241 TDPTVASQRNVFAVGMICCDGEGRLNEKSVLLQSSIEHSGGQRVHLDLHNLSQFSIFPGQ 300

Query: 299 VVGIEGSNPSGHCLIASKLVDQIPLPVDAVVDVHPSMKQALDQEIHSTVVISRPEEISMI 358
           +V IEG NPSGHCL+ASKLVD IPL      ++ P+ KQALDQEI S +  S  +EIS++
Sbjct: 301 IVAIEGHNPSGHCLVASKLVDSIPLSAAPDGNLPPAKKQALDQEIES-IGSSCTQEISVL 359

Query: 359 IAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFH 418
           IA+GPFTT DNL FEPL EL++YA RK PQLLILLGPFVDSEHP+IKKGT D SFDEIF 
Sbjct: 360 IASGPFTTLDNLMFEPLTELLAYASRKLPQLLILLGPFVDSEHPEIKKGTVDGSFDEIFR 419

Query: 419 LEILRRLQDYVEYMGSEVRAILVPSIRDANHDFVLPQPPFDIQPPDIIHQITSLTNPGTF 478
            EILRRLQDYVEYMGS+ + ++VPS RDANHDFV PQP FDI   ++ HQI SLTNPG F
Sbjct: 420 QEILRRLQDYVEYMGSDAQVLIVPSTRDANHDFVFPQPAFDIHRSNLQHQIRSLTNPGIF 479

Query: 479 EANQIKVGCCTVDVLKQLSGEEMSRCSKDGTSNDRMEIYSLDISLMGPAFFFYPLYPPAE 538
           EANQ++VGCCTVD++KQL  EEMSR   DGT ++RM   +  I        FYPLYPPAE
Sbjct: 480 EANQVRVGCCTVDIIKQLGSEEMSRNPTDGTPSNRMSRLANHILSQRS---FYPLYPPAE 536

Query: 539 GIPLDFSLAQEALTISTIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAKG 598
            +PLDFSLA EAL I ++P I+I+PSDMKYFIKVLSLGGR EGEEQ KCVC+NPGRLAKG
Sbjct: 537 DVPLDFSLAPEALHIPSVPHILIVPSDMKYFIKVLSLGGRIEGEEQTKCVCINPGRLAKG 596

Query: 599 EGSGTFAEIYYHGSPEMMNASIISI 623
           EG GTF E+ Y GSP+ MNAS+I I
Sbjct: 597 EGGGTFVELNYRGSPDKMNASVIGI 621

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225425850|ref|XP_002265789.1| PREDICTED: DNA polymerase alpha subunit B [Vitis vinifera] gi|297738371|emb|CBI27572.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297841461|ref|XP_002888612.1| DNA polymerase alpha subunit B family [Arabidopsis lyrata subsp. lyrata] gi|297334453|gb|EFH64871.1| DNA polymerase alpha subunit B family [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30697540|ref|NP_176930.2| DNA polymerase alpha 2 [Arabidopsis thaliana] gi|332196552|gb|AEE34673.1| DNA polymerase alpha 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|26452176|dbj|BAC43176.1| putative DNA polymerase alpha subunit [Arabidopsis thaliana] gi|29028994|gb|AAO64876.1| At1g67630 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449439345|ref|XP_004137446.1| PREDICTED: DNA polymerase alpha subunit B-like [Cucumis sativus] gi|449486914|ref|XP_004157440.1| PREDICTED: DNA polymerase alpha subunit B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357463079|ref|XP_003601821.1| DNA polymerase alpha subunit B [Medicago truncatula] gi|355490869|gb|AES72072.1| DNA polymerase alpha subunit B [Medicago truncatula] Back     alignment and taxonomy information
>gi|12324682|gb|AAG52305.1|AC011020_12 putative DNA polymerase alpha subunit [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356569195|ref|XP_003552790.1| PREDICTED: DNA polymerase alpha subunit B-like [Glycine max] Back     alignment and taxonomy information
>gi|356538103|ref|XP_003537544.1| PREDICTED: DNA polymerase alpha subunit B-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query623
TAIR|locus:2008580620 POLA2 "DNA polymerase alpha 2" 0.983 0.988 0.611 1.1e-199
ZFIN|ZDB-GENE-030131-778600 pola2 "polymerase (DNA directe 0.451 0.468 0.327 4.1e-52
UNIPROTKB|E2R2N0597 POLA2 "Uncharacterized protein 0.382 0.398 0.306 3.4e-41
UNIPROTKB|B4DNB4361 POLA2 "cDNA FLJ60312, highly s 0.353 0.609 0.280 4.4e-37
UNIPROTKB|F1MXS4600 POLA2 "DNA polymerase alpha su 0.375 0.39 0.292 4.7e-37
UNIPROTKB|F1MLC0604 POLA2 "DNA polymerase alpha su 0.338 0.349 0.292 4.9e-37
UNIPROTKB|G3V8U6600 Pola2 "Polymerase (DNA directe 0.393 0.408 0.275 1.6e-35
RGD|621817600 Pola2 "polymerase (DNA directe 0.393 0.408 0.275 2e-35
MGI|MGI:99690600 Pola2 "polymerase (DNA directe 0.337 0.35 0.271 6.9e-35
UNIPROTKB|Q14181598 POLA2 "DNA polymerase alpha su 0.359 0.374 0.279 2e-34
TAIR|locus:2008580 POLA2 "DNA polymerase alpha 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1933 (685.5 bits), Expect = 1.1e-199, P = 1.1e-199
 Identities = 383/626 (61%), Positives = 479/626 (76%)

Query:     2 EEEIKAEFQKNGFNFVDEGEVLKKCLTFCINYNLKPSDLVSSWEVYYLNRQLDESTVKDD 61
             +EEIK EF+++GF  V+E E+LK+C+T CINY+LKPSDLVSSWE+Y+LNRQL + TVK D
Sbjct:     4 DEEIKNEFKRSGFILVEEDEILKRCVTLCINYSLKPSDLVSSWELYHLNRQLLDQTVKKD 63

Query:    62 EMDGFMLHLQNEQKEAIIK-EEPSLHIYSSKDVDMILNDEDENIAEDILGTPPD-NLKLY 119
             +MDGF+LHLQNEQKE+I++ EE  LH+YS++DVDM+L+   E+  E+I+ TP + + +L+
Sbjct:    64 DMDGFVLHLQNEQKESIMRVEEAGLHLYSNRDVDMLLDGVQED-TEEIVTTPTNKSQRLH 122

Query:   120 SDALDSTYKANANGYSSDKPSKLVTPFGRRTEKLVVKFNINNLP-NTENGCIEHDDENTE 178
              D  DS  ++   GYS+ K    VTPFG R EK VVKFN+ N+  + ENG   +D EN+E
Sbjct:   123 PDPFDSISRSRDYGYSTGKSVGHVTPFGSRIEKFVVKFNVGNVAAHAENGN-NNDVENSE 181

Query:   179 DDIIKRIKTGKKCSLMVHGSGPEPGCRFMYDRTEDRFNALENRIRKHANALVSSGLYEEP 238
             DDIIKR++T ++CSL V+GSGPEPGCRFMYDRTEDRF+ALE RI +HA+A  +SGLYEE 
Sbjct:   182 DDIIKRVQTSQRCSLKVNGSGPEPGCRFMYDRTEDRFSALEYRIVRHADAFAASGLYEEQ 241

Query:   239 TDPTVASQRTLFAVGMICCDGDGHLNDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQ 298
              DP VASQR++FAVGMICCDG+GHLNDKS+LLQSS E + GQRV +DL +L +FS+FPGQ
Sbjct:   242 VDPAVASQRSIFAVGMICCDGEGHLNDKSILLQSSAERTSGQRVPVDLKRLDQFSIFPGQ 301

Query:   299 VVGIEGSNPSGHCLIASKLVDQIPLPVDAVVDVHPSMKQALDQEIHSTVVIS-RPEEISM 357
             VVGIEG NPSGH L ASKL+D +PL +   VD+ P+ +Q LDQE+      S +  E+S 
Sbjct:   302 VVGIEGQNPSGHYLTASKLLDSVPLTLTVDVDLPPAKRQILDQEVLVPAEESCQKSEVSF 361

Query:   358 IIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIF 417
             IIA+GPFTT+DNL FEPL EL++YAKRK PQLL+LLGPFVDSEHP+IKKG  D++F+EIF
Sbjct:   362 IIASGPFTTSDNLLFEPLNELLAYAKRKPPQLLVLLGPFVDSEHPEIKKGAVDATFNEIF 421

Query:   418 HLEILRRLQDYVEYMGSEVRAILVPSIRDANHDFVLXXXXXXXXXXXXXXXXTSLTNPGT 477
              +E+LR+LQDYVE+MGSEVR +LVPSIRDANHDF+                 TSL+NPGT
Sbjct:   422 QVEVLRKLQDYVEFMGSEVRVVLVPSIRDANHDFIFPQPPFDIHIPDLEHQMTSLSNPGT 481

Query:   478 FEANQIKVGCCTVDVLKQLSGEEMSRCSKDGTSNDRMEIYSLDISLMGXXXXXXXXXXXX 537
             FEANQ+KV CCTVDVLKQLSGEEMS+ +  G   DRM    L   L+             
Sbjct:   482 FEANQVKVSCCTVDVLKQLSGEEMSK-NPSGVPTDRMS--RLASHLL-RQRSFYPLYPPP 537

Query:   538 EGIPLDFSLAQEALTISTIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAK 597
             E +P D SLA +AL IS+IPDI++LPSDM+YF+K+LSLG   E E+  KCVCVNPGRLAK
Sbjct:   538 ESLPYDSSLAPKALQISSIPDILLLPSDMRYFVKILSLG---EEEDAAKCVCVNPGRLAK 594

Query:   598 GEGSGTFAEIYYHGSPEMMNASIISI 623
             GEG+GTF E+ Y G PE M+ASIISI
Sbjct:   595 GEGAGTFVELTYKGGPESMHASIISI 620
GO:0003677 "DNA binding" evidence=IEA
GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006260 "DNA replication" evidence=IEA;RCA
GO:0005739 "mitochondrion" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
GO:0000724 "double-strand break repair via homologous recombination" evidence=RCA
GO:0006261 "DNA-dependent DNA replication" evidence=RCA
GO:0006270 "DNA replication initiation" evidence=RCA
GO:0006275 "regulation of DNA replication" evidence=RCA
GO:0006306 "DNA methylation" evidence=RCA
GO:0008283 "cell proliferation" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=RCA
GO:0016458 "gene silencing" evidence=RCA
GO:0034968 "histone lysine methylation" evidence=RCA
GO:0051567 "histone H3-K9 methylation" evidence=RCA
GO:0051726 "regulation of cell cycle" evidence=RCA
ZFIN|ZDB-GENE-030131-778 pola2 "polymerase (DNA directed), alpha 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2R2N0 POLA2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|B4DNB4 POLA2 "cDNA FLJ60312, highly similar to DNA polymerase subunit alpha B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MXS4 POLA2 "DNA polymerase alpha subunit B" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1MLC0 POLA2 "DNA polymerase alpha subunit B" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|G3V8U6 Pola2 "Polymerase (DNA directed), alpha 2, isoform CRA_a" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|621817 Pola2 "polymerase (DNA directed), alpha 2, accessory subunit" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:99690 Pola2 "polymerase (DNA directed), alpha 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q14181 POLA2 "DNA polymerase alpha subunit B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.7LOW CONFIDENCE prediction!
4th Layer2.7.7.7LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query623
COG5214581 COG5214, POL12, DNA polymerase alpha-primase compl 8e-57
pfam04042189 pfam04042, DNA_pol_E_B, DNA polymerase alpha/epsil 1e-33
pfam08418239 pfam08418, Pol_alpha_B_N, DNA polymerase alpha sub 0.002
>gnl|CDD|227539 COG5214, POL12, DNA polymerase alpha-primase complex, polymerase-associated subunit B [DNA replication, recombination, and repair] Back     alignment and domain information 
 Score =  201 bits (512), Expect = 8e-57
 Identities = 118/424 (27%), Positives = 180/424 (42%), Gaps = 55/424 (12%)

Query: 205 RFMYDRTEDRFNALENRIRKHANALVSSGLY-------EEPTDPTVASQRTLFAVGMICC 257
           RFMY +   +   L++RI      L S   Y       E+   P   SQ + + VG I  
Sbjct: 159 RFMYQKLRKKSKVLDDRIE-----LFSMKPYFLYLLSIEDFAPPNNVSQSSFYTVGRIVN 213

Query: 258 DG---DGHLNDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPSGHCLIA 314
                   LN +SV L+SS +   G RVRL+L  L  +S+FPGQ+V ++G N  G     
Sbjct: 214 PSTNFGHKLNSESVFLESSRDGGNGVRVRLNLAHLQRYSVFPGQIVAVKGKNTDGGKFTV 273

Query: 315 SKLVDQIPLPVDAVVDVHPSMKQALDQEIHSTVVISRPEEISMIIAAGPFTTTDNLYFEP 374
             +   +P+P   VV ++P+      QE       +  +  S++  +GP+   D+L   P
Sbjct: 274 EAI---LPIP---VVPINPASDG---QEKKYFQANTNNQPTSIVAFSGPYGPRDDLSGSP 324

Query: 375 LKELISYAKRKQPQLLILLGPFVDSEHPQIKKG----TTDSSFDEIFHLEILRRLQDYVE 430
           L + I         +LIL+GPF+D  H  I+ G    T DS   E+F +  +  + D   
Sbjct: 325 LFDAIDRVNANDVDVLILIGPFIDINHILIQYGATQSTPDSMLKELF-IPRITPILDRN- 382

Query: 431 YMGSEVRAILVPSIRDANHDF-VLPQPPFDIQPPDIIHQITSLTNPGTFEANQIKVGCCT 489
              +  +A+L+PS  DA       PQ P       +        NP  F  N+I  G  +
Sbjct: 383 ---AGPKAVLIPSTNDATSCHNAFPQGPIGRNALRLPSNFKCTGNPCEFFINEILFGISS 439

Query: 490 VDVLKQLSGEEMSRCSKDGTSNDRMEIYSLDISLMGPAFFFYPLYPPA---EGIPLDFSL 546
           +D   ++S EE   C  D   +    +  +   L+     FYP++P     +  P    +
Sbjct: 440 LDTPLEISSEE---CFHDSLLSGGDRLGRISYHLLFQR-TFYPVFPGGSLEKCNPSSLDV 495

Query: 547 AQEALTIS---TIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAKGEGSGT 603
              +L      T PDI I+PS +K+F + +              V VNPG  AK    G 
Sbjct: 496 VSLSLPEFMSMTAPDIYIVPSKLKHFCRDV-----------GNVVVVNPGLQAKETNEGI 544

Query: 604 FAEI 607
            A I
Sbjct: 545 AAHI 548

Length = 581
>gnl|CDD|217857 pfam04042, DNA_pol_E_B, DNA polymerase alpha/epsilon subunit B Back     alignment and domain information
>gnl|CDD|219833 pfam08418, Pol_alpha_B_N, DNA polymerase alpha subunit B N-terminal Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 623
KOG1625600 consensus DNA polymerase alpha-primase complex, po 100.0
COG5214581 POL12 DNA polymerase alpha-primase complex, polyme 100.0
PF04042209 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit 100.0
PF08418253 Pol_alpha_B_N: DNA polymerase alpha subunit B N-te 100.0
KOG3818525 consensus DNA polymerase epsilon, subunit B [Repli 99.97
PRK04036504 DNA polymerase II small subunit; Validated 99.96
PTZ00235291 DNA polymerase epsilon subunit B; Provisional 99.87
KOG2732435 consensus DNA polymerase delta, regulatory subunit 99.86
cd07386243 MPP_DNA_pol_II_small_archeal_C archeal DNA polymer 99.83
cd07387257 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2 99.78
COG1311481 HYS2 Archaeal DNA polymerase II, small subunit/DNA 99.77
PRK09453182 phosphodiesterase; Provisional 97.27
cd00841155 MPP_YfcE Escherichia coli YfcE and related protein 97.16
cd07394178 MPP_Vps29 Homo sapiens Vps29 and related proteins, 97.02
cd07388224 MPP_Tt1561 Thermus thermophilus Tt1561 and related 96.83
COG0622172 Predicted phosphoesterase [General function predic 96.79
COG2129226 Predicted phosphoesterases, related to the Icc pro 96.74
PHA02546340 47 endonuclease subunit; Provisional 96.71
TIGR00040158 yfcE phosphoesterase, MJ0936 family. Members of th 96.65
PF14582255 Metallophos_3: Metallophosphoesterase, calcineurin 96.31
PF12850156 Metallophos_2: Calcineurin-like phosphoesterase su 96.18
PRK05340241 UDP-2,3-diacylglucosamine hydrolase; Provisional 95.99
TIGR00619253 sbcd exonuclease SbcD. This family is based on the 95.45
TIGR01854231 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. 95.38
PRK10966 407 exonuclease subunit SbcD; Provisional 94.88
PRK11340271 phosphodiesterase YaeI; Provisional 94.1
cd07385223 MPP_YkuE_C Bacillus subtilis YkuE and related prot 92.17
cd00840223 MPP_Mre11_N Mre11 nuclease, N-terminal metallophos 91.75
COG2908237 Uncharacterized protein conserved in bacteria [Fun 91.6
cd07392188 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and rel 91.5
cd07395262 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, 91.08
TIGR00583 405 mre11 DNA repair protein (mre11). All proteins in 91.05
COG0420 390 SbcD DNA repair exonuclease [DNA replication, reco 90.98
cd07398217 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and relat 90.22
cd08166195 MPP_Cdc1_like_1 uncharacterized subgroup related t 90.21
cd07402240 MPP_GpdQ Enterobacter aerogenes GpdQ and related p 88.64
cd08165156 MPP_MPPE1 human MPPE1 and related proteins, metall 88.48
cd07400144 MPP_YydB Bacillus subtilis YydB and related protei 88.0
cd07383199 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase 87.81
cd07396267 MPP_Nbla03831 Homo sapiens Nbla03831 and related p 87.75
PRK11148275 cyclic 3',5'-adenosine monophosphate phosphodieste 86.49
cd07384171 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and re 86.2
COG1409301 Icc Predicted phosphohydrolases [General function 86.17
PF00149200 Metallophos: Calcineurin-like phosphoesterase; Int 85.36
cd07391172 MPP_PF1019 Pyrococcus furiosus PF1019 and related 83.69
cd07401256 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metal 82.66
cd07399214 MPP_YvnB Bacillus subtilis YvnB and related protei 81.03
KOG3662410 consensus Cell division control protein/predicted 80.79
TIGR03729239 acc_ester putative phosphoesterase. Members of thi 80.16
>KOG1625 consensus DNA polymerase alpha-primase complex, polymerase-associated subunit B [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=2.7e-122  Score=988.33  Aligned_cols=570  Identities=35%  Similarity=0.584  Sum_probs=473.8

Q ss_pred             HHHHHHHHHH-cCCCCCChHHHHHHHHHHHHHcCCChhHHHHHHhhhhhhccCCCCCCChhhHHHHHHHHHHHHHHhhh-
Q 006976            2 EEEIKAEFQK-NGFNFVDEGEVLKKCLTFCINYNLKPSDLVSSWEVYYLNRQLDESTVKDDEMDGFMLHLQNEQKEAII-   79 (623)
Q Consensus         2 ~~~i~~ef~~-fG~~~~~~~~vl~kc~~lc~~y~l~~~dlv~~Weafs~~~~~~~~~l~~~nL~~F~~~l~~~~~~~~~-   79 (623)
                      .+++..||.- ||+  +.++++++||++||+.|..+++++|++|++|++|++  +..++.+||+.|++++|+++++++. 
T Consensus         4 ~~~~~~ef~p~f~~--~e~d~~lekl~~Lc~~y~~~~~~~ve~w~~~~~n~~--~~d~t~~~i~~F~~~~l~~~~~ka~~   79 (600)
T KOG1625|consen    4 SEDFNAEFEPFFGL--PEEDAFLEKLVELCITYRQDGEDKVEQWVAFRLNTG--KLDLTSENIDAFEEELLEQQKQKAVH   79 (600)
T ss_pred             hHHHHhhhccccCC--cHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhccC--CcCchhhhHHHHHHHHHHHHHHHhcc
Confidence            3678888876 887  445689999999999999999999999999999986  4456679999999999998887543 


Q ss_pred             ccCCccccccCccccccccccchh-hhcccC-CCCCCCC-CcCCCCCCccccCCCCCCCC----CCCCCCcCCCccccC-
Q 006976           80 KEEPSLHIYSSKDVDMILNDEDEN-IAEDIL-GTPPDNL-KLYSDALDSTYKANANGYSS----DKPSKLVTPFGRRTE-  151 (623)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~tP~~~~-k~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~r~~-  151 (623)
                      +.++..+-++..+..+..+..... .+++++ +||+.++ +..+.++++.++.|..+.+.    ++.+|..++|..|.. 
T Consensus        80 ~~~~~k~~~~~r~~v~~~s~~~~~~~~e~i~dst~s~gsq~~l~~p~t~~~~~~~~g~s~~~s~sp~SP~s~~f~k~~~~  159 (600)
T KOG1625|consen   80 VPRSVKKNASGRDPVAKKSGFQLPGDEEDIPDSTPSAGSQSALSTPFTPSAIARASGDSLDFSPSPSSPSSEKFEKRASV  159 (600)
T ss_pred             ccccccccccCCCchhhhccccCCCccccCcccccccccccccCCCCCcchhhhhcccCcccccCCCCCCcchhhccccC
Confidence            233333333333332221111111 123333 5999998 78889999888766555443    333355566766665 


Q ss_pred             -CceEEEecCCCCCCCCCCCCCCCCCchhhhhhhcccCCccceeecC--CCCCCccchhhhcHHHHHHHHHHHHHHHHHH
Q 006976          152 -KLVVKFNINNLPNTENGCIEHDDENTEDDIIKRIKTGKKCSLMVHG--SGPEPGCRFMYDRTEDRFNALENRIRKHANA  228 (623)
Q Consensus       152 -~g~v~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~r~M~~kl~~r~~~L~~rI~~~~~~  228 (623)
                       +|+|+.+||......|...+.          .+    ..+++.+..  +.++++|||||+|+.||+++|++||++|+.+
T Consensus       160 n~G~Vv~~~~~~~~~~~s~~~s----------~~----~~~~~kv~~~~~a~~~~~~~m~dkl~d~~e~l~~Ri~~~~~~  225 (600)
T KOG1625|consen  160 NPGEVVTTFGGEKLKDVSSKGS----------VG----PSTQLKVTNFIDAKKPSYRYMYDKLSDRSEVLRDRIESFAPA  225 (600)
T ss_pred             CcchhhhhcCcccccccccCCC----------cC----CcceeeccCccccCCcchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence             999999999763333333221          00    125555554  4789999999999999999999999999999


Q ss_pred             HHHcCCC-CCCCCCCcccCccEEEEEEEEECC---CCCCCCceEEEeeccCCCCCeEEEeecCCCCcccccCCCEEEEEe
Q 006976          229 LVSSGLY-EEPTDPTVASQRTLFAVGMICCDG---DGHLNDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEG  304 (623)
Q Consensus       229 ~~~~~~~-~~~~~~~~~s~~~v~vvGrI~~d~---egkLn~~sv~LE~s~~~~~G~rV~Ldls~l~~~slFPGQIV~v~G  304 (623)
                      +++++++ +++++++.+||+.|++||||+||+   +||||++||+||+||+++.|+||+|||+++++||+||||||+|||
T Consensus       226 ~~~~~~~~ed~~~p~~~Sq~~v~avG~I~~d~~~~~~kln~~Sv~Less~e~~~g~~Vrldls~l~e~SiFPGQIVavkG  305 (600)
T KOG1625|consen  226 IQESYLISEDFANPSIPSQSSVYAVGQIVCDSTKDNGKLNEESVLLESSREDSSGVRVRLDLSRLKEYSIFPGQIVAVKG  305 (600)
T ss_pred             HHHHhccccccCCcccccccceEEEEEEecCCCCcccccCccceEeeeccccCCCceEEeehhhccceeecCCcEEEEee
Confidence            9999998 999999999999999999999999   899999999999999999999999999999999999999999999


Q ss_pred             ecCCCCeEEEeEeccCCCCCCCccccCCCchhhhhhhhccccccccCCCCeEEEEEeCCCcCCCCCCchHHHHHHHHHHc
Q 006976          305 SNPSGHCLIASKLVDQIPLPVDAVVDVHPSMKQALDQEIHSTVVISRPEEISMIIAAGPFTTTDNLYFEPLKELISYAKR  384 (623)
Q Consensus       305 ~n~~G~~f~V~ei~~~~Pl~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~I~vAsGPft~~d~l~~epL~~ll~~~~~  384 (623)
                      +|++|++|+|++||...|+|.+.   .|   .++ +.+.+       ...+ |+|||||||++||+.|+||.|||++++.
T Consensus       306 ~N~~G~~l~v~ki~~~~plp~~~---~~---~qe-d~~~~-------~~~~-ivvasGPyt~sDnl~yepL~dll~~v~~  370 (600)
T KOG1625|consen  306 KNPTGEKLTVEKILPIPPLPIPV---QP---LQE-DATFE-------ANTV-IVVASGPYTASDNLSYEPLCDLLDYVNA  370 (600)
T ss_pred             ecCCCCeEEeeeeccCCCCCCCc---Cc---hhh-hhhcc-------ccce-EEEEecCccCccccchhHHHHHHHHHhc
Confidence            99999999999999766676222   22   221 21111       1124 9999999999999999999999999999


Q ss_pred             cCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCCCCCCCCCCCCCCCCCC
Q 006976          385 KQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANHDFVLPQPPFDIQPPD  464 (623)
Q Consensus       385 ~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~~~VvlVPS~rD~~~~~v~PQpp~~~~~~~  464 (623)
                      ++||||||+|||||++|++|++|.++.||+|+|+++|+..|+.+.   ++.+++|||||++|+++++|||||||.+..+.
T Consensus       371 ~~pdvLIL~GPFlD~~h~~i~~~~~t~t~delF~~~i~~ile~~~---~~~~~vVlvPs~~Da~~~~vfPq~pf~~~~~~  447 (600)
T KOG1625|consen  371 ERPDVLILFGPFLDSKHPLINKGALTITFDELFEKLILGILETLV---GSKTQVVLVPSTNDALCLPVFPQPPFARNRLS  447 (600)
T ss_pred             CCCCEEEEeccccCccChhhccCCcCccHHHHHHHHHHHHHHhcc---CCcceEEEeccccccccCccCCCCchhhhhcc
Confidence            999999999999999999999999999999999997776666553   46789999999999999999999999776554


Q ss_pred             CC-CceEEecCCcEEEECCEEEEeechHHHHhhhhhhcccCCCCCCcchhHHHHHHhhhccccccccccCCCCCCccccc
Q 006976          465 II-HQITSLTNPGTFEANQIKVGCCTVDVLKQLSGEEMSRCSKDGTSNDRMEIYSLDISLMGPAFFFYPLYPPAEGIPLD  543 (623)
Q Consensus       465 l~-~~v~~~~NP~~~~in~v~igvts~Dvl~~L~~~ei~~~~~~~~~~dr~~rl~~hi~~l~~QrsfyPl~P~~~~~~lD  543 (623)
                      ++ +|++|++|||.|+|||+.|||||+|+++||+++|+++++. +.++|||+||++||  | +|||||||||| +++++|
T Consensus       448 ~~~~~l~~~~nPc~f~in~v~vg~ts~D~l~~Ls~eE~~~~~~-~~~~dR~~Rls~Hl--L-~QrsfYPL~PP-~dl~~s  522 (600)
T KOG1625|consen  448 DEKKNLKCVANPCLFSINGVEVGVTSTDTLLHLSSEEFFRNAL-QSNGDRLARLSSHL--L-TQRSFYPLFPP-EDLPVS  522 (600)
T ss_pred             CcccceEEccCcceEEEccEEEEeecchHHHHhhhhHhhcCCC-CcchHHHHHHHHHH--h-hcccccccCCc-hhcchh
Confidence            44 7999999999999999999999999999999999999763 45789999999999  9 99999999996 678999


Q ss_pred             hhcccccccCCCCCcEEEcCCCCcceEEEecCCCCCCccccceEEEEcCCccccCCCCceEEEEEEcCC-----c----c
Q 006976          544 FSLAQEALTISTIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAKGEGSGTFAEIYYHGS-----P----E  614 (623)
Q Consensus       544 ~~~~~~~l~l~~~PDILIlPS~l~~F~k~v~~~~~~~~~~~~~~v~INPG~l~k~~~~Gtya~l~v~~~-----~----~  614 (623)
                      ++.+.+++++..+|||||+||+|+||+|+|++           |||||||+++||.++||||+++|+.+     .    .
T Consensus       523 ~~~~~~~~~~~~~PdIlIlPSdLr~Fvk~V~~-----------~V~iNpGr~aKg~~~Gtfa~lti~~pe~G~~~e~v~~  591 (600)
T KOG1625|consen  523 YSLLLKYAQIGSTPDILILPSDLRHFVKDVNG-----------CVVINPGRLAKGTNGGTFAKLTIRLPEAGMGGETVWD  591 (600)
T ss_pred             hhhHHHHhccCCCCcEEEechhhHHHHHhcCC-----------eEEEcchhhccCcCCceeEEEEEecCCCCCCcccccc
Confidence            99888999999999999999999999999964           99999999999999999999999932     2    2


Q ss_pred             cccceeeeC
Q 006976          615 MMNASIISI  623 (623)
Q Consensus       615 ~~~a~~~~i  623 (623)
                      .+.|+|+||
T Consensus       592 ~~~~qi~ki  600 (600)
T KOG1625|consen  592 RAAAQILKI  600 (600)
T ss_pred             chhhheecC
Confidence            478899987

>COG5214 POL12 DNA polymerase alpha-primase complex, polymerase-associated subunit B [DNA replication, recombination, and repair] Back     alignment and domain information
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast Back     alignment and domain information
>PF08418 Pol_alpha_B_N: DNA polymerase alpha subunit B N-terminal; InterPro: IPR013627 This is the eukaryotic DNA polymerase alpha subunit B N-terminal domain which is involved in complex formation [] Back     alignment and domain information
>KOG3818 consensus DNA polymerase epsilon, subunit B [Replication, recombination and repair] Back     alignment and domain information
>PRK04036 DNA polymerase II small subunit; Validated Back     alignment and domain information
>PTZ00235 DNA polymerase epsilon subunit B; Provisional Back     alignment and domain information
>KOG2732 consensus DNA polymerase delta, regulatory subunit 55 [Replication, recombination and repair] Back     alignment and domain information
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain Back     alignment and domain information
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain Back     alignment and domain information
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK09453 phosphodiesterase; Provisional Back     alignment and domain information
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain Back     alignment and domain information
>COG0622 Predicted phosphoesterase [General function prediction only] Back     alignment and domain information
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only] Back     alignment and domain information
>PHA02546 47 endonuclease subunit; Provisional Back     alignment and domain information
>TIGR00040 yfcE phosphoesterase, MJ0936 family Back     alignment and domain information
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A Back     alignment and domain information
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [] Back     alignment and domain information
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional Back     alignment and domain information
>TIGR00619 sbcd exonuclease SbcD Back     alignment and domain information
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase Back     alignment and domain information
>PRK10966 exonuclease subunit SbcD; Provisional Back     alignment and domain information
>PRK11340 phosphodiesterase YaeI; Provisional Back     alignment and domain information
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain Back     alignment and domain information
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain Back     alignment and domain information
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain Back     alignment and domain information
>TIGR00583 mre11 DNA repair protein (mre11) Back     alignment and domain information
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair] Back     alignment and domain information
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain Back     alignment and domain information
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain Back     alignment and domain information
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain Back     alignment and domain information
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain Back     alignment and domain information
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional Back     alignment and domain information
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain Back     alignment and domain information
>COG1409 Icc Predicted phosphohydrolases [General function prediction only] Back     alignment and domain information
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11 Back     alignment and domain information
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain Back     alignment and domain information
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain Back     alignment and domain information
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair] Back     alignment and domain information
>TIGR03729 acc_ester putative phosphoesterase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query623
3flo_A460 Crystal Structure Of The Carboxyl-Terminal Domain O 8e-33
>pdb|3FLO|A Chain A, Crystal Structure Of The Carboxyl-Terminal Domain Of Yeast Dna Polymerase Alpha In Complex With Its B Subunit Length = 460 Back     alignment and structure 
Iteration: 1

 Score =  138 bits (348), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 113/410 (27%), Positives = 173/410 (42%), Gaps = 66/410 (16%)
Query: 239 TDPTVASQRTLFAVGMICCDG---DGHLNDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLF 295
            DPT+ SQ  ++AVG I  D    D  LN +S+ L++S     G+RVRLDL ++ E S F
Sbjct: 39  ADPTIQSQSEIYAVGRIVPDSPTYDKFLNPESLSLETSRMGGVGRRVRLDLSQVNELSFF 98
Query: 296 PGQVVGIEGSNPSGHCLIASKLVDQIPLPVDAVVDVHPSMKQALDQEIHSTVVISRPEEI 355
            GQ+V  +G N +G     + +   +PLP       +P+   +  QE+           +
Sbjct: 99  LGQIVAFKGKNANGDYFTVNSI---LPLP-------YPNSPVSTSQELQEFQANLEGSSL 148
Query: 356 SMIIAAGPFTTTDNLYFEPLKELI-SYAKRKQPQLLILLGPFVDSEHPQIKKG------- 407
            +I+  GP+   DN   E L+E I S     +P +LI+ GPF+D  HP I  G       
Sbjct: 149 KVIVTCGPYFANDNFSLELLQEFIDSINNEVKPHVLIMFGPFIDITHPLIASGKLPNFPQ 208
Query: 408 --TTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDA--NHDFVLXXXXXXXXXX 463
             T   + DE+F    L+     ++ +   ++ +L+PS +DA  NH              
Sbjct: 209 FKTQPKTLDELF----LKLFTPILKTISPHIQTVLIPSTKDAISNHAAYPQASLIRKALQ 264
Query: 464 XXXXXXTSLTNPGTFEANQIKVGCCTVDVLKQLS-----GEEMSRCSKDGTSND------ 512
                   + NP +F+ N+I  GC  VD  K L      G   SR   D  S        
Sbjct: 265 LPKRNFKCMANPSSFQINEIYFGCSNVDTFKDLKEVIKGGTTSSRYRLDRVSEHILQQRR 324
Query: 513 ---------RMEIYSLDISLMGXXXXXXXXXXXX----EGIPLDFS-LAQEALTISTIPD 558
                    R  I   D+S                    G  LD S L          PD
Sbjct: 325 YYPIFPGSIRTRIKPKDVSTKKETNDMESKEEKVYEHISGADLDVSYLGLTEFVGGFSPD 384
Query: 559 IIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAKGEGS-GTFAEI 607
           I+I+PS++++F +V+           +  V +NPGR  +  G+ G++A+I
Sbjct: 385 IMIIPSELQHFARVV-----------QNVVVINPGRFIRATGNRGSYAQI 423

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query623
3flo_A460 DNA polymerase alpha subunit B; protein-protein co 3e-93
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
3e0j_A476 DNA polymerase subunit delta-2; DNA polymerase del 3e-08
4e2i_278 DNA polymerase alpha subunit B; replication initia 5e-04
2keb_A101 DNA polymerase subunit alpha B; DNA polymerase alp 5e-04
>3flo_A DNA polymerase alpha subunit B; protein-protein complex, phosphoesterase fold, OB fold, zinc-binding motif, DNA replication; HET: DNA; 2.50A {Saccharomyces cerevisiae} Length = 460 Back     alignment and structure
 Score =  294 bits (753), Expect = 3e-93
 Identities = 110/450 (24%), Positives = 188/450 (41%), Gaps = 68/450 (15%)

Query: 204 CRFMYDRTEDRFNALENRIRKHANALVSS--GLYEEPTDPTVASQRTLFAVGMICCDG-- 259
            R M    ++  + L+++I      + +       +  DPT+ SQ  ++AVG I  D   
Sbjct: 2   FRTMRQNLQEASDVLDDQIESFTKIIQNHYKLSPNDFADPTIQSQSEIYAVGRIVPDSPT 61

Query: 260 -DGHLNDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPSGHCLIASKLV 318
            D  LN +S+ L++S     G+RVRLDL ++ E S F GQ+V  +G N +G     + + 
Sbjct: 62  YDKFLNPESLSLETSRMGGVGRRVRLDLSQVNELSFFLGQIVAFKGKNANGDYFTVNSI- 120

Query: 319 DQIPLPVDAVVDVHPSMKQALDQEIHSTVVISRPEEISMIIAAGPFTTTDNLYFEPLKEL 378
             +PLP       +P+   +  QE+           + +I+  GP+   DN   E L+E 
Sbjct: 121 --LPLP-------YPNSPVSTSQELQEFQANLEGSSLKVIVTCGPYFANDNFSLELLQEF 171

Query: 379 ISYAKRK-QPQLLILLGPFVDSEHPQIKKG---------TTDSSFDEIFHLEILRRLQDY 428
           I     + +P +LI+ GPF+D  HP I  G         T   + DE+F     +     
Sbjct: 172 IDSINNEVKPHVLIMFGPFIDITHPLIASGKLPNFPQFKTQPKTLDELFL----KLFTPI 227

Query: 429 VEYMGSEVRAILVPSIRDA-NHDFVLPQPPFDIQPPDIIHQ-ITSLTNPGTFEANQIKVG 486
           ++ +   ++ +L+PS +DA ++    PQ     +   +  +    + NP +F+ N+I  G
Sbjct: 228 LKTISPHIQTVLIPSTKDAISNHAAYPQASLIRKALQLPKRNFKCMANPSSFQINEIYFG 287

Query: 487 CCTVDVLKQLSGEEMSRCSKDGTSNDRM------------------------EIYSLDIS 522
           C  VD  K L        +      DR+                        +  S    
Sbjct: 288 CSNVDTFKDLKEVIKGGTTSSRYRLDRVSEHILQQRRYYPIFPGSIRTRIKPKDVSTKKE 347

Query: 523 LMGPAFFFYPLYPPAEGIPLDFS-LAQEALTISTIPDIIILPSDMKYFIKVLSLGGRNEG 581
                     +Y    G  LD S L          PDI+I+PS++++F +V+        
Sbjct: 348 TNDMESKEEKVYEHISGADLDVSYLGLTEFVGGFSPDIMIIPSELQHFARVV-------- 399

Query: 582 EEQKKCVCVNPGRLAKGEGS-GTFAEIYYH 610
              +  V +NPGR  +  G+ G++A+I   
Sbjct: 400 ---QNVVVINPGRFIRATGNRGSYAQITVQ 426
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens} Length = 476 Back     alignment and structure
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens} Length = 78 Back     alignment and structure
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens} Length = 101 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query623
3flo_A460 DNA polymerase alpha subunit B; protein-protein co 100.0
3e0j_A476 DNA polymerase subunit delta-2; DNA polymerase del 99.95
2keb_A101 DNA polymerase subunit alpha B; DNA polymerase alp 99.77
4e2i_278 DNA polymerase alpha subunit B; replication initia 99.7
3av0_A 386 DNA double-strand break repair protein MRE11; DNA 97.29
2kkn_A178 Uncharacterized protein; protein phosphatase 2A ho 97.23
1z2w_A192 Vacuolar protein sorting 29; VPS29, retromer, phos 97.13
4fbw_A 417 DNA repair protein RAD32; DNA double-strand break 97.09
2a22_A215 Vacuolar protein sorting 29; alpha-beta-BETA-alpha 97.07
4fbk_A 472 DNA repair and telomere maintenance protein NBS1, 97.06
2yvt_A260 Hypothetical protein AQ_1956; structural genomics, 97.03
1s3l_A190 Hypothetical protein MJ0936; phosphodiesterase, nu 96.92
3ck2_A176 Conserved uncharacterized protein (predicted phosp 96.35
3ib7_A330 ICC protein; metallophosphoesterase, alpha-beta fo 96.35
3t1i_A 431 Double-strand break repair protein MRE11A; DNA rep 96.2
1su1_A208 Hypothetical protein YFCE; structural genomics, ph 95.5
1ii7_A333 MRE11 nuclease; RAD50, DNA double-strand break rep 93.37
1uf3_A228 Hypothetical protein TT1561; metallo-dependent pho 92.14
2q8u_A336 Exonuclease, putative; structural genomics, joint 91.33
2xmo_A 443 LMO2642 protein; phosphodiesterase, hydrolase; 1.7 90.42
3tho_B 379 Exonuclease, putative; adenosine triphosphate, bac 90.06
2nxf_A322 Putative dimetal phosphatase; dinuclear metal cent 89.25
3d03_A274 Phosphohydrolase; glycerophosphodiesterase, metall 83.29
>3flo_A DNA polymerase alpha subunit B; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=2e-103  Score=855.13  Aligned_cols=380  Identities=29%  Similarity=0.518  Sum_probs=332.2

Q ss_pred             ccchhhhcHHHHHHHHHHHHHHHHHHHHHcCCCC--CCCCCCcccCccEEEEEEEEECC---CCCCCCceEEEeeccCCC
Q 006976          203 GCRFMYDRTEDRFNALENRIRKHANALVSSGLYE--EPTDPTVASQRTLFAVGMICCDG---DGHLNDKSVLLQSSVEHS  277 (623)
Q Consensus       203 ~~r~M~~kl~~r~~~L~~rI~~~~~~~~~~~~~~--~~~~~~~~s~~~v~vvGrI~~d~---egkLn~~sv~LE~s~~~~  277 (623)
                      +||||||||.||+++||+||++|++++++|++++  +|++++.+||++|+||||||||+   |||||++|++|||||++|
T Consensus         1 ~yr~M~~kl~e~~~vLd~~I~~~~~~~~~~~~~~~~~f~~p~~~sq~~v~~vGRI~~Ds~~~egkLn~~Sl~LE~sr~~g   80 (460)
T 3flo_A            1 KFRTMRQNLQEASDVLDDQIESFTKIIQNHYKLSPNDFADPTIQSQSEIYAVGRIVPDSPTYDKFLNPESLSLETSRMGG   80 (460)
T ss_dssp             --CCSCCCHHHHHHHHHHHHHHHHHHHHHHHTCCGGGBCCTTSCCSSCEEEEEEEEESSSSCCSCCCTTSEEEECCHHHH
T ss_pred             CchhhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcccCccccEEEEEEEeeCCCCCCCCcchhheEEEeccccC
Confidence            5999999999999999999999999999999988  59999999999999999999997   999999999999999999


Q ss_pred             CCeEEEeecCCCCcccccCCCEEEEEeecCCCCeEEEeEeccCCCCCCCccccCCCchhhhhhhhccccccccCCCCeEE
Q 006976          278 GGQRVRLDLHKLGEFSLFPGQVVGIEGSNPSGHCLIASKLVDQIPLPVDAVVDVHPSMKQALDQEIHSTVVISRPEEISM  357 (623)
Q Consensus       278 ~G~rV~Ldls~l~~~slFPGQIV~v~G~n~~G~~f~V~ei~~~~Pl~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~I  357 (623)
                      +|+||+|||+++++||||||||||+||+|++|++|+|+|||. +|++.++     .+..+++....+    ...+.+++|
T Consensus        81 ~G~rV~Ldls~l~~~slFPGQIVav~G~N~~G~~f~v~ei~~-~P~~~~p-----~s~~~~l~~~~~----~~~~~~l~i  150 (460)
T 3flo_A           81 VGRRVRLDLSQVNELSFFLGQIVAFKGKNANGDYFTVNSILP-LPYPNSP-----VSTSQELQEFQA----NLEGSSLKV  150 (460)
T ss_dssp             TTCEEEEECTTCCCEEECTTCEEEEEEECSSSSCEEEEEECC-CCCCCCC-----EEEHHHHHHHHH----HHTSSCEEE
T ss_pred             CCeEEEeecccCCceeecCCCEEEEEEEcCCCCEEEEeeecc-CCCCCCC-----CCCHHHhhhhhh----hccCCCcEE
Confidence            999999999999999999999999999999999999999994 6654433     222333332221    123579999


Q ss_pred             EEEeCCCcCCCCCCchHHHHHHHHHHcc-CCcEEEEeCcccCCCCccccCCCc---------cccHHHHHHHHHHHHHHH
Q 006976          358 IIAAGPFTTTDNLYFEPLKELISYAKRK-QPQLLILLGPFVDSEHPQIKKGTT---------DSSFDEIFHLEILRRLQD  427 (623)
Q Consensus       358 ~vAsGPft~~d~l~~epL~~ll~~~~~~-~PdvlIL~GPFvD~~h~~i~~g~~---------~~t~~~lF~~~il~~l~~  427 (623)
                      ||||||||++|||+|+||++|++++++. +||+|||+|||||++||+|++|++         +.||+++|++.|...|  
T Consensus       151 vvAsGPyT~sdnl~yepL~~Ll~~v~~~~kPdvLIL~GPFvD~~hp~i~~G~~p~~~~~~~~~~t~~~lF~~~i~~il--  228 (460)
T 3flo_A          151 IVTCGPYFANDNFSLELLQEFIDSINNEVKPHVLIMFGPFIDITHPLIASGKLPNFPQFKTQPKTLDELFLKLFTPIL--  228 (460)
T ss_dssp             EEEESCCSCSSCCCCHHHHHHHHHCCCCCCCSEEEEESCSSBTTCHHHHHTCCCCCTTCSSCCSSHHHHHHHHTHHHH--
T ss_pred             EEEeCCccCCCccChHHHHHHHHHHHhccCCCEEEEecCcccccCcccccCcccccccccccccCHHHHHHHHHHHHH--
Confidence            9999999999999999999999999985 899999999999999999999998         7899999998544333  


Q ss_pred             HHHhcCCceEEEEecCCCCCCC-CCCCCCCCCCCCCCCCCC-ceEEecCCcEEEECCEEEEeechHHHHhhhhhhcccCC
Q 006976          428 YVEYMGSEVRAILVPSIRDANH-DFVLPQPPFDIQPPDIIH-QITSLTNPGTFEANQIKVGCCTVDVLKQLSGEEMSRCS  505 (623)
Q Consensus       428 ~~~~~~~~~~VvlVPS~rD~~~-~~v~PQpp~~~~~~~l~~-~v~~~~NP~~~~in~v~igvts~Dvl~~L~~~ei~~~~  505 (623)
                        +.++++++||||||+||+++ +.+||||||+++.+++++ |++|++|||+|+|||+.||+||.|+++||+  |+.+++
T Consensus       229 --~~l~~~t~VVlVPS~rD~~~~~~v~PQPpf~~k~l~l~k~nv~~~sNPc~~~in~v~igvss~Dil~~L~--e~~~~~  304 (460)
T 3flo_A          229 --KTISPHIQTVLIPSTKDAISNHAAYPQASLIRKALQLPKRNFKCMANPSSFQINEIYFGCSNVDTFKDLK--EVIKGG  304 (460)
T ss_dssp             --TTSCTTSEEEEECCTTBTTCSCCSBSBCCCCTTTTTCCTTTEEECCBSEEEEETTEEEEECCSCHHHHCC--CEEECH
T ss_pred             --HhccCCCEEEEeCCcccccCCCCCcCCCCCChhhhcCCcccEEEeCCCEEEEECCEEEEEEcHHHHHHHH--HhhcCC
Confidence              34578999999999999985 689999999998878887 999999999999999999999999999997  455432


Q ss_pred             CCCCcchhHHHHHHhhhccccccccccCCCCCCcc------------------------------ccchhccccccc-CC
Q 006976          506 KDGTSNDRMEIYSLDISLMGPAFFFYPLYPPAEGI------------------------------PLDFSLAQEALT-IS  554 (623)
Q Consensus       506 ~~~~~~dr~~rl~~hi~~l~~QrsfyPl~P~~~~~------------------------------~lD~~~~~~~l~-l~  554 (623)
                      . +..+||++|+++||  | +|||||||||++...                              +||.++++.... ++
T Consensus       305 ~-~~~~dr~~Rl~~hl--L-~Qr~~yPL~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Ldv~yl~l~e~~~~  380 (460)
T 3flo_A          305 T-TSSRYRLDRVSEHI--L-QQRRYYPIFPGSIRTRIKPKDVSTKKETNDMESKEEKVYEHISGADLDVSYLGLTEFVGG  380 (460)
T ss_dssp             H-HHHSCHHHHHHHHH--H-HHTBSCCCSSCCEEC-------------------------CCEECCBCGGGGGGGBCGGG
T ss_pred             C-CccccHHHHHHHHH--h-hcCcccCcCCCcccccccccccccccccccccccccccccccCCcccceeccchhhcccC
Confidence            1 13579999999999  9 999999999998543                              366666543222 28


Q ss_pred             CCCcEEEcCCCCcceEEEecCCCCCCccccceEEEEcCCccccCCCC-ceEEEEEEcCCc
Q 006976          555 TIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAKGEGS-GTFAEIYYHGSP  613 (623)
Q Consensus       555 ~~PDILIlPS~l~~F~k~v~~~~~~~~~~~~~~v~INPG~l~k~~~~-Gtya~l~v~~~~  613 (623)
                      ++|||||+||+|++|+|+|++           |||||||+|+|+++| ||||+|+|+++.
T Consensus       381 ~~PDilI~PS~l~~F~kvv~~-----------~v~INPG~l~k~~~g~GTya~l~i~~~~  429 (460)
T 3flo_A          381 FSPDIMIIPSELQHFARVVQN-----------VVVINPGRFIRATGNRGSYAQITVQCPD  429 (460)
T ss_dssp             CCCSEEECCCSSCCEEEEETT-----------EEEEECCCSBCTTSCBCEEEEEEECCCC
T ss_pred             CCCCEEEcCCCCcCceEEeCC-----------EEEECcccccCCCCCCceeEEEEEeCCc
Confidence            999999999999999999965           999999999999997 999999999864
>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens} Back     alignment and structure
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens} Back     alignment and structure
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens} Back     alignment and structure
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A* Back     alignment and structure
>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima} Back     alignment and structure
>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 3psn_A 3pso_A 1w24_A 2r17_A Back     alignment and structure
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B* Back     alignment and structure
>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7 Back     alignment and structure
>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32 chimeric protein; DNA double-strand break repair, nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe} PDB: 4fbq_A* Back     alignment and structure
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6 Back     alignment and structure
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A Back     alignment and structure
>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae} SCOP: d.159.1.7 Back     alignment and structure
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A Back     alignment and structure
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens} Back     alignment and structure
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7 Back     alignment and structure
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A Back     alignment and structure
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6 Back     alignment and structure
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A Back     alignment and structure
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes} Back     alignment and structure
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C Back     alignment and structure
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12 Back     alignment and structure
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query623
d2a22a1193 Vacuolar protein sorting 29, VPS29 {Cryptosporidiu 97.95
d2yvta1257 Uncharacterized protein Aq_1956 {Aquifex aeolicus 97.54
d1z2wa1182 Vacuolar protein sorting 29, VPS29 {Mouse (Mus mus 97.14
d1s3la_165 Putative phosphodiesterase MJ0936 {Methanococcus j 97.03
d1uf3a_228 Hypothetical protein TT1561 {Thermus thermophilus 97.01
d1su1a_184 Phosphodiesterase yfcE {Escherichia coli [TaxId: 5 96.91
d1ii7a_333 Mre11 {Archaeon Pyrococcus furiosus [TaxId: 2261]} 94.28
d3ck2a1173 Uncharacterized protein SP1879 {Streptococcus pneu 94.2
d1nnwa_251 Hypothetical protein PF1291 {Archaeon Pyrococcus f 92.98
d2hy1a1256 Rv0805 cyclic nucleotide phosphodiesterase {Mycoba 91.24
d2nxfa1320 Uncharacterized C17orf48 homolog zgc:64213 {Zebraf 82.46
>d2a22a1 d.159.1.7 (A:4-196) Vacuolar protein sorting 29, VPS29 {Cryptosporidium parvum [TaxId: 5807]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: YfcE-like
domain: Vacuolar protein sorting 29, VPS29
species: Cryptosporidium parvum [TaxId: 5807]

Probab=97.95  E-value=0.00011  Score=68.92  Aligned_cols=159  Identities=11%  Similarity=0.117  Sum_probs=95.8

Q ss_pred             EEEEeCCCcCCCCCCchHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCCce
Q 006976          357 MIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEV  436 (623)
Q Consensus       357 I~vAsGPft~~d~l~~epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~~  436 (623)
                      |+|.|.-..+...++..  ..+.+.....++|.+|.+|.+++.                    ++++.|+++      ..
T Consensus         6 IlviSD~H~~~~~~~l~--~~~~~~~~~~~vD~ii~~GDi~~~--------------------~~l~~l~~l------~~   57 (193)
T d2a22a1           6 VLLIGDLKIPYGAKELP--SNFRELLATDKINYVLCTGNVCSQ--------------------EYVEMLKNI------TK   57 (193)
T ss_dssp             EEEECCCCTTTTCSSCC--GGGHHHHHCTTCCEEEECSCCCCH--------------------HHHHHHHHH------CS
T ss_pred             EEEEeCCCCCcccchhh--HHHHHHhccCCCCEEEECCCCCCH--------------------HHHHHHHhh------CC
Confidence            77777655433334332  233344557899999999998641                    134444432      12


Q ss_pred             EEEEecCCCCCCCCCCCCCCCCCCCCCCCCCceEEecCCcEEEECCEEEEeechHHHHhhhhhhcccCCCCCCcchhHHH
Q 006976          437 RAILVPSIRDANHDFVLPQPPFDIQPPDIIHQITSLTNPGTFEANQIKVGCCTVDVLKQLSGEEMSRCSKDGTSNDRMEI  516 (623)
Q Consensus       437 ~VvlVPS~rD~~~~~v~PQpp~~~~~~~l~~~v~~~~NP~~~~in~v~igvts~Dvl~~L~~~ei~~~~~~~~~~dr~~r  516 (623)
                      .++.|++..|..-.  -++.          .....+|....+.+++..|.++...-.        .  +  ....+++.+
T Consensus        58 ~v~~V~GN~D~~~~--~~~~----------~~~~~lp~~~~~~~~~~~i~l~H~~~~--------~--~--~~~~~~l~~  113 (193)
T d2a22a1          58 NVYIVSGDLDSAIF--NPDP----------ESNGVFPEYVVVQIGEFKIGLMHGNQV--------L--P--WDDPGSLEQ  113 (193)
T ss_dssp             CEEECCCTTCCSCC--BCCG----------GGTBCCCSEEEEEETTEEEEEECSTTS--------S--S--TTCHHHHHH
T ss_pred             CEEEEcCCCCcchh--hhhH----------HHHhhCCccEEEEECCEEEEEEeccCC--------C--C--CCCHHHHHH
Confidence            48889999996421  1111          112235666778899999887653210        0  0  001122221


Q ss_pred             HHHhhhccccccccccCCCCCCccccchhcccccccCCCCCcEEEcCCCCcceEEEecCCCCCCccccceEEEEcCCccc
Q 006976          517 YSLDISLMGPAFFFYPLYPPAEGIPLDFSLAQEALTISTIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLA  596 (623)
Q Consensus       517 l~~hi~~l~~QrsfyPl~P~~~~~~lD~~~~~~~l~l~~~PDILIlPS~l~~F~k~v~~~~~~~~~~~~~~v~INPG~l~  596 (623)
                      ++.                                  ...+|+++.++.-.+|++.+++           +++||||+..
T Consensus       114 ~~~----------------------------------~~~~dvvi~GHTH~~~~~~~~g-----------~~~iNPGSvg  148 (193)
T d2a22a1         114 WQR----------------------------------RLDCDILVTGHTHKLRVFEKNG-----------KLFLNPGTAT  148 (193)
T ss_dssp             HHH----------------------------------HHTCSEEEECSSCCCEEEEETT-----------EEEEECCCSS
T ss_pred             HHh----------------------------------hcCCCEEEEcCccCceEEEECC-----------EEEEECCCCC
Confidence            111                                  1237899999999999999854           9999999986


Q ss_pred             c------CCCCceEEEEEEcCC
Q 006976          597 K------GEGSGTFAEIYYHGS  612 (623)
Q Consensus       597 k------~~~~Gtya~l~v~~~  612 (623)
                      -      +....|||.+.+.+.
T Consensus       149 ~pr~~~~~~~~~syaild~~~~  170 (193)
T d2a22a1         149 GAFSALTPDAPPSFMLMALQGN  170 (193)
T ss_dssp             CCCCTTSTTCCCEEEEEEEETT
T ss_pred             cCcCCCCCCCCCEEEEEEEECC
Confidence            2      223459999999865
>d2yvta1 d.159.1.6 (A:4-260) Uncharacterized protein Aq_1956 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1z2wa1 d.159.1.7 (A:1-182) Vacuolar protein sorting 29, VPS29 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1s3la_ d.159.1.7 (A:) Putative phosphodiesterase MJ0936 {Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1su1a_ d.159.1.7 (A:) Phosphodiesterase yfcE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ii7a_ d.159.1.4 (A:) Mre11 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d3ck2a1 d.159.1.7 (A:1-173) Uncharacterized protein SP1879 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1nnwa_ d.159.1.5 (A:) Hypothetical protein PF1291 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2hy1a1 d.159.1.11 (A:10-265) Rv0805 cyclic nucleotide phosphodiesterase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2nxfa1 d.159.1.12 (A:3-322) Uncharacterized C17orf48 homolog zgc:64213 {Zebrafish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure