Citrus Sinensis ID: 006993
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 622 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FYT6 | 715 | Chloroplastic group IIA i | N/A | no | 0.717 | 0.623 | 0.404 | 1e-97 | |
| Q6YYA3 | 725 | Chloroplastic group IIA i | no | no | 0.737 | 0.633 | 0.393 | 5e-96 | |
| Q9LF10 | 720 | Chloroplastic group IIA i | no | no | 0.617 | 0.533 | 0.445 | 4e-84 | |
| Q67XL4 | 444 | Uncharacterized CRM domai | no | no | 0.282 | 0.396 | 0.351 | 2e-24 | |
| Q84N49 | 674 | CRS2-associated factor 1, | N/A | no | 0.144 | 0.133 | 0.333 | 9e-05 | |
| Q5VMQ5 | 701 | CRS2-associated factor 1, | no | no | 0.144 | 0.128 | 0.322 | 0.0001 |
| >sp|Q9FYT6|CRS1_MAIZE Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Zea mays GN=CRS1 PE=1 SV=1 | Back alignment and function desciption |
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Score = 357 bits (917), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 201/497 (40%), Positives = 299/497 (60%), Gaps = 51/497 (10%)
Query: 6 KTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSG 65
KTGGLV+W G +YRG Y Q K H ++
Sbjct: 237 KTGGLVVWTKGDMHFVYRGSKY-----------------------QQNAKHSHTFLT--- 270
Query: 66 NSLSAAADKTAQDPSNFDSYNNVH---ATQVNLETASEEQETDFVREVKYEDEVEKLLDG 122
NVH A Q N ++ +++ + V+ YE EV +LLD
Sbjct: 271 ---------------------NVHKDDAFQENDQSICGQKDEEPVKGTLYEREVNRLLDT 309
Query: 123 LGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPP 182
LGPR+ DW PLPVDAD+LP VPG + P+R+ P GVR TLA +E T L++LAR+LP
Sbjct: 310 LGPRFVDWWWDTPLPVDADLLPEFVPGSKTPYRLCPPGVRPTLADEELTYLRKLARLLPT 369
Query: 183 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNK 242
HFALGR+ +LQGLA A++KLWEKS IAKIA+K G+Q T +E+M ++K LTGGT++ RNK
Sbjct: 370 HFALGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNEQMAWNLKHLTGGTVILRNK 429
Query: 243 DFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGT 302
DF++ YRGK+FL V + + +RE Q +EE+ARL+A L + + + + GT
Sbjct: 430 DFIILYRGKDFLPGGVAQTVIQREAQVHDEQVKEEEARLKA-VDSLQMVGELSEESSLGT 488
Query: 303 LKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKV 362
+E ++++ ++ + EAE R ++ E KL+ +K+ R+ +AL+K+
Sbjct: 489 FREYQGFHAKFVHENTENSNTMIELEAEKYRLEKELKDHEWKLSVLNKKIERSNQALAKL 548
Query: 363 EESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELV 422
S P+E+ AD E +T+EE+ MFR++G +M +LLGRRG+FDG +E +H HWK++E+V
Sbjct: 549 HSSWSPSEQSADREHLTEEEKIMFRRIGRKMDGLVLLGRRGIFDGVIEEIHQHWKHKEVV 608
Query: 423 KIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLT 482
K+I K Q A LE E+GG+L++V+K++ +A+++YRGK+Y+RP+ NLLT
Sbjct: 609 KVITKQNQTRQIMYAASLLEVETGGILIAVEKLTTSHAIILYRGKNYRRPAKSSFSNLLT 668
Query: 483 KRKALARSIELQRQEAL 499
KR+AL RSIE+QR+ ++
Sbjct: 669 KREALRRSIEVQRRGSM 685
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Required for the splicing of group IIA introns in chloroplasts, and especially for atpF, by regulating the intron folding. Forms splicing particles with RNA. Also involved in chloroplast protein translation. Zea mays (taxid: 4577) |
| >sp|Q6YYA3|CRS1_ORYSJ Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0360100 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9LF10|CRS1_ARATH Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Arabidopsis thaliana GN=At5g16180 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q84N49|CAF1P_MAIZE CRS2-associated factor 1, chloroplastic OS=Zea mays GN=CAF1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q5VMQ5|CAF1P_ORYSJ CRS2-associated factor 1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0495900 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 622 | ||||||
| 225432918 | 902 | PREDICTED: chloroplastic group IIA intro | 0.938 | 0.647 | 0.729 | 0.0 | |
| 147852748 | 902 | hypothetical protein VITISV_010525 [Viti | 0.938 | 0.647 | 0.729 | 0.0 | |
| 224111046 | 894 | predicted protein [Populus trichocarpa] | 0.918 | 0.638 | 0.712 | 0.0 | |
| 255551945 | 773 | conserved hypothetical protein [Ricinus | 0.932 | 0.750 | 0.695 | 0.0 | |
| 356576487 | 835 | PREDICTED: chloroplastic group IIA intro | 0.887 | 0.661 | 0.697 | 0.0 | |
| 449432614 | 874 | PREDICTED: chloroplastic group IIA intro | 0.903 | 0.643 | 0.689 | 0.0 | |
| 357441009 | 838 | Chloroplastic group IIA intron splicing | 0.877 | 0.651 | 0.681 | 0.0 | |
| 297831030 | 873 | hypothetical protein ARALYDRAFT_898801 [ | 0.858 | 0.611 | 0.654 | 0.0 | |
| 9294196 | 850 | unnamed protein product [Arabidopsis tha | 0.826 | 0.604 | 0.658 | 0.0 | |
| 30686898 | 881 | CRM family member 3A [Arabidopsis thalia | 0.826 | 0.583 | 0.658 | 0.0 |
| >gi|225432918|ref|XP_002280226.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Vitis vinifera] gi|297737163|emb|CBI26364.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 880 bits (2273), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/599 (72%), Positives = 501/599 (83%), Gaps = 15/599 (2%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
RKTGGLVIWRSGT+VSLYRGVSYEVP VQLNKR+YK+NE SS S S++
Sbjct: 285 RKTGGLVIWRSGTSVSLYRGVSYEVP-VQLNKRVYKKNETSHSSFS-----------SIT 332
Query: 65 GNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLG 124
NS + +++KT+ + S NVHA+Q L E + D EVKYEDE++KLLDGLG
Sbjct: 333 PNSFAISSNKTSGNAPAVGSNQNVHASQATLNITDGENK-DTESEVKYEDEIDKLLDGLG 391
Query: 125 PRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHF 184
PRYTDWPGCDPLP+DAD+LPG + GYQPPFR+LPYGVRS+L KEAT L+RLARVLPPHF
Sbjct: 392 PRYTDWPGCDPLPIDADLLPGKIHGYQPPFRILPYGVRSSLGLKEATALRRLARVLPPHF 451
Query: 185 ALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDF 244
ALGRSRQL+GLA+AMIKLWE+SSIAK+ALKRGVQLTTSERM EDIKKLTGG LLSRNKDF
Sbjct: 452 ALGRSRQLEGLAMAMIKLWERSSIAKVALKRGVQLTTSERMAEDIKKLTGGVLLSRNKDF 511
Query: 245 LVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLK 304
LVFYRGKNFLS DVTEAL ERERLAK+LQDEEEQARLRAS + P++ E+ G+AGTL
Sbjct: 512 LVFYRGKNFLSSDVTEALLERERLAKALQDEEEQARLRASTLITPTVGITEQVGSAGTLG 571
Query: 305 ETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEE 364
ETL+A++RWGKRLDD K+ ++++AEV RHA LV+KLE++LA AERKL++AE ALSKVEE
Sbjct: 572 ETLEADARWGKRLDDHDKQKMLKKAEVARHANLVRKLERRLALAERKLMKAENALSKVEE 631
Query: 365 SLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKI 424
LKPA R ADPESITDEERFMFRKLGLRMKAFLLLGRRGVF GTVENMHLHWKYRELVKI
Sbjct: 632 FLKPANRPADPESITDEERFMFRKLGLRMKAFLLLGRRGVFSGTVENMHLHWKYRELVKI 691
Query: 425 IVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKR 484
IVK KTFDQ KK ALALE+ESGGVLVSVDK+SKG+A+VV+RGKDYQRPSTLRPKNLLTKR
Sbjct: 692 IVKAKTFDQVKKTALALESESGGVLVSVDKVSKGFAIVVFRGKDYQRPSTLRPKNLLTKR 751
Query: 485 KALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYATEDD 544
KALARSIELQR+EAL H++ L+ N +LRSEIEQM+ VK GDE+LYDKLDSAYATED+
Sbjct: 752 KALARSIELQRREALYNHISALQRNVEKLRSEIEQMDIVKDHGDEELYDKLDSAYATEDE 811
Query: 545 DSEDEGDEAYLEMYAGGNDNEDEIDNSTHNLEMESDFPYHAQDQESETE--LMDSESEA 601
+E+EGDEAYLE YA ND E E DNS HN +E++FPY Q +E ETE + D ESE
Sbjct: 812 HTEEEGDEAYLETYADENDGEHESDNSIHNHHIETNFPYDIQGEEFETEAAVQDEESET 870
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147852748|emb|CAN79523.1| hypothetical protein VITISV_010525 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224111046|ref|XP_002315729.1| predicted protein [Populus trichocarpa] gi|222864769|gb|EEF01900.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|255551945|ref|XP_002517017.1| conserved hypothetical protein [Ricinus communis] gi|223543652|gb|EEF45180.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|356576487|ref|XP_003556362.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449432614|ref|XP_004134094.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Cucumis sativus] gi|449504099|ref|XP_004162252.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|357441009|ref|XP_003590782.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago truncatula] gi|355479830|gb|AES61033.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|297831030|ref|XP_002883397.1| hypothetical protein ARALYDRAFT_898801 [Arabidopsis lyrata subsp. lyrata] gi|297329237|gb|EFH59656.1| hypothetical protein ARALYDRAFT_898801 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|9294196|dbj|BAB02098.1| unnamed protein product [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|30686898|ref|NP_188947.2| CRM family member 3A [Arabidopsis thaliana] gi|332643191|gb|AEE76712.1| CRM family member 3A [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 622 | ||||||
| TAIR|locus:2094558 | 881 | CFM3A "CRM family member 3A" [ | 0.776 | 0.548 | 0.648 | 2.1e-180 | |
| TAIR|locus:2094997 | 848 | EMB1865 "embryo defective 1865 | 0.662 | 0.485 | 0.487 | 8.2e-114 | |
| TAIR|locus:2096662 | 1011 | CFM2 "CRM family member 2" [Ar | 0.766 | 0.471 | 0.419 | 3.7e-96 | |
| TAIR|locus:2181372 | 720 | CRS1 "ortholog of maize chloro | 0.636 | 0.55 | 0.429 | 6.5e-81 | |
| TAIR|locus:2094438 | 444 | LOH1 "LAG One Homologue 1" [Ar | 0.247 | 0.346 | 0.362 | 8.3e-22 | |
| TAIR|locus:2123276 | 343 | AT4G13070 [Arabidopsis thalian | 0.237 | 0.431 | 0.387 | 6.2e-19 | |
| TAIR|locus:2091458 | 491 | AT3G27550 [Arabidopsis thalian | 0.220 | 0.279 | 0.342 | 7.8e-17 | |
| TAIR|locus:2056558 | 372 | AT2G28480 [Arabidopsis thalian | 0.209 | 0.349 | 0.383 | 4.6e-16 | |
| TAIR|locus:2061604 | 701 | CAF1 [Arabidopsis thaliana (ta | 0.188 | 0.166 | 0.227 | 0.00076 | |
| TAIR|locus:2126694 | 405 | AT4G31010 [Arabidopsis thalian | 0.178 | 0.274 | 0.330 | 0.00094 |
| TAIR|locus:2094558 CFM3A "CRM family member 3A" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1600 (568.3 bits), Expect = 2.1e-180, Sum P(3) = 2.1e-180
Identities = 315/486 (64%), Positives = 378/486 (77%)
Query: 84 SYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADML 143
S VH Q+ ET S E++ V+YEDE+++LLD LGPR+ DWPG +PLPVDAD+L
Sbjct: 342 SDEKVHLPQLEQETTSVEKKDQTSPVVEYEDELDELLDDLGPRFMDWPGDNPLPVDADLL 401
Query: 144 PGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLW 203
PG +P Y+PPFRVLPYGVRS+L KEAT L+RLAR +PPHFALGRSRQLQGLA AM++LW
Sbjct: 402 PGAIPDYEPPFRVLPYGVRSSLGPKEATALRRLARSIPPHFALGRSRQLQGLATAMVRLW 461
Query: 204 EKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQ 263
EKS +AKIA+KRGVQ TTSERM ED+KKLTGG +LSRNKDFLVFYRGKNFLS +V +AL
Sbjct: 462 EKSMLAKIAIKRGVQSTTSERMAEDLKKLTGGIMLSRNKDFLVFYRGKNFLSREVADALV 521
Query: 264 ERERLAKSLQDEEEQARLR-ASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDS-H 321
E+ER ++LQDEEEQARLR +SA ++PS E K +AGTL ETLDA +WGK LDD H
Sbjct: 522 EQERFVRTLQDEEEQARLRGSSALIVPSTEPANKLVSAGTLGETLDATGKWGKNLDDDDH 581
Query: 322 KENLVREAEVRRHAYLVQXXXXXXXXXXXXXXXXXXXXSKVEESLKPAERQADPESITDE 381
+ + +E E+ RH LV+ +KVE LKPAE++ DPESITDE
Sbjct: 582 SDEVKQEVEILRHENLVRKLERKLAFAERKLLKAERGLAKVEVCLKPAEQREDPESITDE 641
Query: 382 ERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALAL 441
ERFMFRKLGL+MKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVK KTFD KK+ALAL
Sbjct: 642 ERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGVKKVALAL 701
Query: 442 EAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLK 501
EAESGG+LVS+DK++KGYA++VYRG+DY+RP+ LRPKNLLTKRKALARSIELQR+E LLK
Sbjct: 702 EAESGGILVSIDKVTKGYAIIVYRGQDYKRPTMLRPKNLLTKRKALARSIELQRREGLLK 761
Query: 502 HVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYATXXXXXXXXXXX-AYLEMYAG 560
H++T+++ A +LR+EIEQM V GDE+LY+KLD AYA+ A+ E YA
Sbjct: 762 HISTMQAKAKQLRAEIEQMEKVTDKGDEELYNKLDMAYASSDEETDEEDDDDAFPETYAE 821
Query: 561 GNDNED 566
G D E+
Sbjct: 822 GEDGEE 827
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| TAIR|locus:2094997 EMB1865 "embryo defective 1865" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2096662 CFM2 "CRM family member 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2181372 CRS1 "ortholog of maize chloroplast splicing factor CRS1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2094438 LOH1 "LAG One Homologue 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2123276 AT4G13070 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2091458 AT3G27550 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2056558 AT2G28480 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2061604 CAF1 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2126694 AT4G31010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 622 | |||
| smart01103 | 84 | smart01103, CRS1_YhbY, Escherichia coli YhbY is as | 1e-21 | |
| pfam01985 | 84 | pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain | 1e-21 | |
| smart01103 | 84 | smart01103, CRS1_YhbY, Escherichia coli YhbY is as | 9e-13 | |
| pfam01985 | 84 | pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain | 2e-11 |
| >gnl|CDD|198171 smart01103, CRS1_YhbY, Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly | Back alignment and domain information |
|---|
Score = 89.1 bits (222), Expect = 1e-21
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 378 ITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKI 437
+T +++ R L +K + +G+ G+ +G +E + + EL+K+ V + K+I
Sbjct: 1 LTGKQKRYLRSLAHHLKPVVQIGKNGLTEGVLEEIDEALEKHELIKVKVLGNDREDRKEI 60
Query: 438 ALALEAESGGVLVSVDKISKGYAMVVYR 465
A L E+G LV V G +V+YR
Sbjct: 61 AEELAEETGAELVQV----IGKTIVLYR 84
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GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome. Length = 84 |
| >gnl|CDD|190184 pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain | Back alignment and domain information |
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| >gnl|CDD|198171 smart01103, CRS1_YhbY, Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly | Back alignment and domain information |
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| >gnl|CDD|190184 pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain | Back alignment and domain information |
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Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 622 | |||
| KOG1990 | 564 | consensus Poly(A)-specific exoribonuclease PARN [R | 100.0 | |
| PRK10343 | 97 | RNA-binding protein YhbY; Provisional | 99.92 | |
| TIGR00253 | 95 | RNA_bind_YhbY putative RNA-binding protein, YhbY f | 99.92 | |
| PF01985 | 84 | CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR | 99.92 | |
| COG1534 | 97 | Predicted RNA-binding protein containing KH domain | 99.91 | |
| PF01985 | 84 | CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR | 99.64 | |
| TIGR00253 | 95 | RNA_bind_YhbY putative RNA-binding protein, YhbY f | 98.93 | |
| PRK10343 | 97 | RNA-binding protein YhbY; Provisional | 98.59 | |
| COG1534 | 97 | Predicted RNA-binding protein containing KH domain | 98.26 | |
| KOG1990 | 564 | consensus Poly(A)-specific exoribonuclease PARN [R | 98.1 |
| >KOG1990 consensus Poly(A)-specific exoribonuclease PARN [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-73 Score=622.40 Aligned_cols=461 Identities=46% Similarity=0.692 Sum_probs=430.5
Q ss_pred cceeeCc-EEEEecCCeEEEeeccCCCCcchhhhhhhhcccCCCCCCccccchhhhhhhhcccCCcchhhhccccCCCCC
Q 006993 3 YWRKTGG-LVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSN 81 (622)
Q Consensus 3 ~~rkTGG-LVIWRsGs~~vlYRG~~Y~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (622)
++..||| +||||+|++++.|+|+.|..|.+-.+++ + +
T Consensus 75 ~~~~~~~n~~~~~~g~~~s~~~~~~~~~~~~~~~~~---~-~-------------------------------------- 112 (564)
T KOG1990|consen 75 LEMSTGGNFVVWSRGDSISSPEFLCQRSPVDFVARQ---Q-E-------------------------------------- 112 (564)
T ss_pred hhccCCCceeeeecCccccCCccceeecchhhhhhh---c-h--------------------------------------
Confidence 5788999 9999999999999999999986443321 0 0
Q ss_pred CCCccccccchhhhcccccccccccccccccHHHHHhhhcCcCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCC
Q 006993 82 FDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGV 161 (622)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~d~lLd~LGPRf~dW~g~~PlPVDaDlLP~~vpgyk~PfRlLP~gv 161 (622)
+.......++++|.+.+|+++||++.||||.+|+|+|+|+||+.||+|.+|||.||+|+
T Consensus 113 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~i~~~~~p~r~l~~~~ 171 (564)
T KOG1990|consen 113 ---------------------NQAGKWPSELEKEKNELLDSLGPELSDWGGSDRLSVDADLLPEKIPDYMRPFRTLPVGS 171 (564)
T ss_pred ---------------------hhhhhhHHHHHHHHHHHhhccCcccccCCCCCCccchhhhchhhhhcccChhccCCCCC
Confidence 00001134678999999999999999999999999999999999999999999999999
Q ss_pred CCcCCHHHHHHHHHhhhcCCCeeeeccccccchHHHHHHHHhhccceeEEeeccCCCcCchHHHHHHH--hhccCceEEe
Q 006993 162 RSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDI--KKLTGGTLLS 239 (622)
Q Consensus 162 rp~LT~~E~t~Lrrlar~lp~hf~LGRn~~~qGLa~am~klWeks~i~KIa~KrGv~~td~e~ma~eL--k~LTGG~lLs 239 (622)
++.||..|++.+|+++.++|+||++|+++.+||++.+|+++|+++.++||+|+||++++..+.||.+| +.+|||+|++
T Consensus 172 ~~~l~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~k~~~~k~~~~rg~~~~~~~~~a~~l~~~~~tg~~lv~ 251 (564)
T KOG1990|consen 172 PPLLTSIESTLLRRLGYKLPPHFALGRSRKLQGLAVAMVSFWEKHEFAKILIKRGVLETRKERMADELQELLLTGKVLVL 251 (564)
T ss_pred hhhhhhHHHHHHHHhcccccccceehhccccccchhHHHHHHHHHHHHHHHHHhcchhhhccchHHHHHHHHhcCCeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred ecCcEEEEEecCCCCChhHHHHHHHHHHHHHhhhhHHHHHHhhhccccccccccccccCccchhHHHHhhhhhccCCCCc
Q 006993 240 RNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDD 319 (622)
Q Consensus 240 r~k~~Iv~yRGkdflp~~V~~~l~eR~~~~~~~q~~Ee~aR~~a~~~~~~~~~~~~~~~~agtl~e~~~a~~~w~~~~~~ 319 (622)
||+.++++|||++|++ .|.++|.++.......++.++.+|+... .+. .....++|+.|+..+.++|+..+..
T Consensus 252 hN~~~dv~y~~~~Fl~-~lp~~l~~f~~~~~~fp~~~~~~~~~~~---~~~----~~~~~~~t~~e~~~~~~~~~~~~~~ 323 (564)
T KOG1990|consen 252 HNKLLDVMYRYKNFLS-PLPSTLEEFTDSSSMFPNIEDTKRLAKL---SEY----QKLNLKATLLELARAKAKKEKEIER 323 (564)
T ss_pred eccceeeeeehhhccc-ccchhHHHhhhhhhhhhhhHHHHHhhcc---ccc----cchhhhhhHHHHHHHhcccccCccc
Confidence 9999999999999999 9999999999998889999999999862 221 2256899999999999999999876
Q ss_pred hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCHHHHHHHHHhccCCcceEe
Q 006993 320 SHK-ENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLL 398 (622)
Q Consensus 320 ~~~-~~m~~e~~~~~~~~~~~~~e~KL~~a~~K~~kae~~L~K~e~~~~P~e~~~d~E~LT~eERr~LRklGhkLKPvV~ 398 (622)
... ..+..+.+...+++..+.+.+|++.+++|+++++..|++++.+..|++..++++.+|.+++.+++++|.+|++++.
T Consensus 324 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~t~ee~~~~~k~g~k~~~~~~ 403 (564)
T KOG1990|consen 324 RSISSRLKLEFEKASSEKLTEAIFHKLEKAKKKLASANRILAKLEDPKIPAELRYDPESITEEERLMLRKVGLKMKRRLL 403 (564)
T ss_pred ccccchhhhhhhccchhhHHHHHHHHHhhhhhhccchhhhhhcccccccccccccchhhcChHHHHHHHHHHHhhccccc
Confidence 553 4678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhhCCeEeEEEcCCCH-HHHHHHHHHHHHHhCCEEEeecccccCcEEEEEecCCCCCCCCCCC
Q 006993 399 LGRRGVFDGTVENMHLHWKYRELVKIIVKVKTF-DQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRP 477 (622)
Q Consensus 399 IGK~GVTdgVVeeIh~Awk~hELVKVk~~~~~~-ed~keiAe~Lee~TGg~LVqV~kv~IG~tIILYRGkNYkrP~~l~P 477 (622)
+|++|+++|++.++|.||++||++||+|+.... .+++..|..++..+|+++|+++++..|+.|+.|||+||++|..++|
T Consensus 404 ~~rrg~f~g~i~n~~l~wk~~e~~k~i~~~~~~~~~~~~~a~~le~esg~~~v~~~~~~~~~ai~~yr~k~y~~p~~l~P 483 (564)
T KOG1990|consen 404 SGRRGVFDGVIENMHLHWKSRELVKVICKEKNLPSQVKQYASALERESGGILVSIDKNPKGYAIIAYRGKNYDRPTSLRP 483 (564)
T ss_pred cCCcccccceeecchhhhhhcccceeeeccccccHHHHHHHHHHHHHhCCceeeeccCCchhhHHHhhhhhccCCcccCc
Confidence 999999999999999999999999999998876 9999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHH
Q 006993 478 KNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDK 534 (622)
Q Consensus 478 knlLTKrkAl~rS~e~qr~~~l~~~i~~l~k~i~~l~~~l~~~~~~~~~~~~~l~~~ 534 (622)
.++|+||+|+.+|+++|++++++.||..++.++++++.++..|...+.+.|.+.+.+
T Consensus 484 ~~~l~~~k~~~~~~~~~~~~a~~~~i~~~~~~~e~~~~~~~~~~~~~~~~d~~~en~ 540 (564)
T KOG1990|consen 484 RNLLSRRKALERSLEEQRKEALKSHISDLEQEIEQLQASVEAMPAINKKDDLEEENS 540 (564)
T ss_pred hhhhcccCCccccHHHHHHHHHhhhcchhhhhHHHhhcchhcccccccccchHHHhh
Confidence 999999999999999999999999999999999999999999999999999888888
|
|
| >PRK10343 RNA-binding protein YhbY; Provisional | Back alignment and domain information |
|---|
| >TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family | Back alignment and domain information |
|---|
| >PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain | Back alignment and domain information |
|---|
| >COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain | Back alignment and domain information |
|---|
| >TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family | Back alignment and domain information |
|---|
| >PRK10343 RNA-binding protein YhbY; Provisional | Back alignment and domain information |
|---|
| >COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG1990 consensus Poly(A)-specific exoribonuclease PARN [Replication, recombination and repair] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A Length = 98 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 2e-12
Identities = 17/89 (19%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 377 SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKK 436
+++ +++ + L + ++LG G+ +G + + + EL+K+ V + +
Sbjct: 2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQL 61
Query: 437 IALALEAESGGVLVSVDKISKGYAMVVYR 465
I A+ E+ V G+ +V+YR
Sbjct: 62 IINAIVRETKAAQVQT----IGHILVLYR 86
|
| >1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1 Length = 104 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 622 | |||
| 1rq8_A | 104 | Conserved hypothetical protein; structural genomic | 99.94 | |
| 1jo0_A | 98 | Hypothetical protein HI1333; structural genomics, | 99.94 | |
| 1jo0_A | 98 | Hypothetical protein HI1333; structural genomics, | 99.39 | |
| 1rq8_A | 104 | Conserved hypothetical protein; structural genomic | 99.28 |
| >1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=7.1e-27 Score=206.94 Aligned_cols=96 Identities=24% Similarity=0.434 Sum_probs=91.1
Q ss_pred CCCHHHHHHHHHhccCCcceEeeCCCCCCHHHHHHHHHHHhhCCeEeEEEcCCCHHHHHHHHHHHHHHhCCEEEeecccc
Q 006993 377 SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKIS 456 (622)
Q Consensus 377 ~LT~eERr~LRklGhkLKPvV~IGK~GVTdgVVeeIh~Awk~hELVKVk~~~~~~ed~keiAe~Lee~TGg~LVqV~kv~ 456 (622)
|||++||++||++||+|+|+|+|||+|||++|+++|+.||++||||||+|.+++.++++++|+.|++.|||++||+
T Consensus 1 mLt~kqr~~LR~~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~---- 76 (104)
T 1rq8_A 1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQV---- 76 (104)
T ss_dssp CCCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEE----
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEE----
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred cCcEEEEEecCCCCCCCCCCC
Q 006993 457 KGYAMVVYRGKDYQRPSTLRP 477 (622)
Q Consensus 457 IG~tIILYRGkNYkrP~~l~P 477 (622)
||+++||||++. ..|.+..|
T Consensus 77 IG~~~VLYR~~~-~~~~i~~~ 96 (104)
T 1rq8_A 77 IGSMIVIYRESK-ENKEIELP 96 (104)
T ss_dssp ETTEEEEEECCC-SCCSCCCC
T ss_pred ECCEEEEEeCCC-CCCceecc
Confidence 999999999876 55666555
|
| >1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A | Back alignment and structure |
|---|
| >1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A | Back alignment and structure |
|---|
| >1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 622 | ||||
| d1jo0a_ | 97 | d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus i | 2e-21 | |
| d1jo0a_ | 97 | d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus i | 1e-12 | |
| d1rq8a_ | 96 | d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphy | 4e-21 | |
| d1rq8a_ | 96 | d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphy | 7e-12 |
| >d1jo0a_ d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus influenzae [TaxId: 727]} Length = 97 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: IF3-like superfamily: YhbY-like family: YhbY-like domain: YhbY homologue HI1333 species: Haemophilus influenzae [TaxId: 727]
Score = 87.1 bits (216), Expect = 2e-21
Identities = 18/102 (17%), Positives = 44/102 (43%), Gaps = 6/102 (5%)
Query: 377 SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKK 436
+++ +++ + L + ++LG G+ +G + + + EL+K+ V + +
Sbjct: 2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQL 61
Query: 437 IALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPK 478
I A+ E+ V G+ +V+YR + P+
Sbjct: 62 IINAIVRETKAAQVQT----IGHILVLYRPSE--EAKIQLPR 97
|
| >d1jo0a_ d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus influenzae [TaxId: 727]} Length = 97 | Back information, alignment and structure |
|---|
| >d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]} Length = 96 | Back information, alignment and structure |
|---|
| >d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]} Length = 96 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 622 | |||
| d1jo0a_ | 97 | YhbY homologue HI1333 {Haemophilus influenzae [Tax | 99.94 | |
| d1rq8a_ | 96 | Hypothetical protein SAV1595 {Staphylococcus aureu | 99.94 | |
| d1jo0a_ | 97 | YhbY homologue HI1333 {Haemophilus influenzae [Tax | 99.58 | |
| d1rq8a_ | 96 | Hypothetical protein SAV1595 {Staphylococcus aureu | 99.55 |
| >d1jo0a_ d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: IF3-like superfamily: YhbY-like family: YhbY-like domain: YhbY homologue HI1333 species: Haemophilus influenzae [TaxId: 727]
Probab=99.94 E-value=5.8e-27 Score=202.12 Aligned_cols=96 Identities=19% Similarity=0.361 Sum_probs=90.7
Q ss_pred CCCHHHHHHHHHhccCCcceEeeCCCCCCHHHHHHHHHHHhhCCeEeEEEcCCCHHHHHHHHHHHHHHhCCEEEeecccc
Q 006993 377 SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKIS 456 (622)
Q Consensus 377 ~LT~eERr~LRklGhkLKPvV~IGK~GVTdgVVeeIh~Awk~hELVKVk~~~~~~ed~keiAe~Lee~TGg~LVqV~kv~ 456 (622)
+||++||++||++||+|+|+|+||++|||++||.+|+.||+.||||||+|.+++.++++++++.|++.|||.+||+
T Consensus 2 tLt~kqr~~LR~~ah~lkp~v~IGk~Glt~~vi~ei~~al~~~ELIKvki~~~~~~~~~~~~~~l~~~t~~~vV~~---- 77 (97)
T d1jo0a_ 2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQT---- 77 (97)
T ss_dssp CCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEE----
T ss_pred CCCHHHHHHHHHHhcCCCCEEEECCCCCCHHHHHHHHHHHHhCCeEEEEEcCCCHHHHHHHHHHHHHHhCCEEEEE----
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred cCcEEEEEecCCCCCCCCCCCc
Q 006993 457 KGYAMVVYRGKDYQRPSTLRPK 478 (622)
Q Consensus 457 IG~tIILYRGkNYkrP~~l~Pk 478 (622)
||+++||||+++ .|.+..|+
T Consensus 78 iG~~~ilYR~~~--~~~i~lPk 97 (97)
T d1jo0a_ 78 IGHILVLYRPSE--EAKIQLPR 97 (97)
T ss_dssp ETTEEEEECCCS--SCCBCCCC
T ss_pred ECCEEEEEcCCC--CCCCCCCC
Confidence 999999999865 46666664
|
| >d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]} | Back information, alignment and structure |
|---|
| >d1jo0a_ d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
| >d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]} | Back information, alignment and structure |
|---|