Citrus Sinensis ID: 007007

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-
Protein Sequence
MPATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPQQPQNLPEESTPESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHccccccccccEEEEEEcccccHHHHHHHHHHHHcccEEEEcccEEEEcccccccccccccEEEEEEEccccccccccccccEEcccccEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEccccccccHHHHHHHccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccHHHEcccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccEEccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHcccccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEccHHHcccEEEEEEEEccccccHcHHHHHcccccEEEEEEccccccc
Coil and Loop (DISEMBL)
MPATVISTHQQVTSVqeqgedtasqdsnsdvaartppakssgvgstastpavgpatpisinvpaqtlsnasntspvlpgsssvrgvfdntgpisssppvnltsstkeedvgnfpgrrsspsltdvrvmgrgglssqpsssiplssatavpsngnlgavplvsdVAKRNILGAeerlgssgmvqsLVSPLSNRMILSqaakgndgtgsidsnnagetvamagrvftpsmgmqwrtgnsfqnqnepgqfrgrteiapdQREKFLQRLQQVQQQGHsnllgmplggnkqfssqqnpllqqfnsqgssisaqaglglgvqapgmnsvtsaslqqqpnpihqqssqqtlmsggqkdadvshlkveepqqpqnlpeestpesasspglgknliheddlkapyaidsstgvsasltepaqvvrdtdlspgqplqssqpsgglgvigrrsvsdlgaigdslsgatvssggmhdqMYNMQMLESAfyklpqpkdserarsyiprhpavtppsypqvqapivsnpafwerlsldsygtdTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTwfqrheepkvandefeqgtyvyfdfhianddlqhgwcQRIKTEFTFEynyledeliv
Flexible Loop (DISEMBL)
mpatvisthqqvtsvqeqgedtasqdsnsdvaartppakssgvgstastpaVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNtgpisssppvnltsstkeedvgnfpgrrsspsltdvRVMGRGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGaeerlgssgmVQSLVSPLSNRMILSQAAkgndgtgsidsnnagETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPqqpqnlpeestpesaSSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDlspgqplqssqpsgglgvIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTwfqrheepkvANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
Low Complexity Region (SEG)
MPATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGlssqpsssiplssATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFlqrlqqvqqqGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVeepqqpqnlpeestpesasspGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDlspgqplqssqpsgglgVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
Disordered region (IsUnstruct)
**************************************************************************************************************************************************************PLVSDV******************************************************************************************************************************************************************************************************************************************************************************************************************************************************VQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDE***
Disordered Region (DISOPRED)
*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************SVSDLGAIGDS*******************MLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE*******EFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELI*
Disordered Region (DISEMBL)
**************************************************AVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSS****************FPGRRSSPSLTDVRVMGR*****************AVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSV******************************VSHLKV**********************LGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDT****************LGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
Disordered Region (DISPRO)
*******************************************************TPI*************************************************************PSLTDVRVMGRGGL***PSSSIPLSS********NLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQ**K******SID***AGETVAMAGRVFTPSMGMQWRTGNSF********FRG*TEIAPDQREKFLQRLQQVQQQGHSNLLGM************NP***************************************************************************************************************************************************R*VSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED*L**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPQQPQNLPEESTPESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	621	2.2.26 [Sep-21-2011]
Q8K0V4	751	CCR4-NOT transcription co	yes	no	0.225	0.186	0.542	1e-43
O75175	753	CCR4-NOT transcription co	yes	no	0.225	0.185	0.542	1e-43
O13870	640	General negative regulato	yes	no	0.259	0.251	0.416	7e-34
Q52JK6	603	Probable NOT transcriptio	N/A	no	0.301	0.310	0.268	1e-11
Q9NZN8	540	CCR4-NOT transcription co	no	no	0.181	0.209	0.310	5e-11
Q8C5L3	540	CCR4-NOT transcription co	no	no	0.181	0.209	0.310	6e-11
Q9FPW4	614	Probable NOT transcriptio	no	no	0.111	0.112	0.376	3e-08
P06100	191	General negative regulato	yes	no	0.202	0.659	0.329	6e-07
P87240	306	General negative regulato	no	no	0.161	0.326	0.3	1e-06
Q94547	585	Regulator of gene activit	no	no	0.128	0.136	0.333	2e-05

>sp|Q8K0V4|CNOT3_MOUSE CCR4-NOT transcription complex subunit 3 OS=Mus musculus GN=Cnot3 PE=1 SV=1

 Score =  178 bits (452), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 83/153 (54%), Positives = 100/153 (65%), Gaps = 13/153 (8%)

Query: 465 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 524
           +Q+Y   M E+A++ +P P DSER R Y+PR+P  TPP + Q+  P      F++RLS  
Sbjct: 608 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 665

Query: 525 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 584
              T+TLFF FYY + T  QYLAAK LKKQSWR+H KY  WFQRHEEPK   DEFEQGTY
Sbjct: 666 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 722

Query: 585 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 617
           +YFD+          W QR K  FTFEY YLED
Sbjct: 723 IYFDY--------EKWGQRKKEGFTFEYRYLED 747

The CCR4-NOT complex functions as general transcription regulation complex.
Mus musculus (taxid: 10090)

>sp|O75175|CNOT3_HUMAN CCR4-NOT transcription complex subunit 3 OS=Homo sapiens GN=CNOT3 PE=1 SV=1

 Score =  178 bits (451), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 83/153 (54%), Positives = 100/153 (65%), Gaps = 13/153 (8%)

Query: 465 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 524
           +Q+Y   M E+A++ +P P DSER R Y+PR+P  TPP + Q+  P      F++RLS  
Sbjct: 610 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 667

Query: 525 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 584
              T+TLFF FYY + T  QYLAAK LKKQSWR+H KY  WFQRHEEPK   DEFEQGTY
Sbjct: 668 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 724

Query: 585 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 617
           +YFD+          W QR K  FTFEY YLED
Sbjct: 725 IYFDY--------EKWGQRKKEGFTFEYRYLED 749

The CCR4-NOT complex functions as general transcription regulation complex.

Homo sapiens (taxid: 9606)

>sp|O13870|NOT3_SCHPO General negative regulator of transcription subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=not3 PE=1 SV=2

 Score =  145 bits (367), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 72/173 (41%), Positives = 99/173 (57%), Gaps = 12/173 (6%)

Query: 446 LGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYP 505
           L  + ++L+ +     G  D+    + L  +   +P   D+ + + YIP+ P   P  YP
Sbjct: 475 LKDLVNALNTSKEQHKGAIDKEKLTEALNISCVYVPDATDAAKPQYYIPKDPYPVPHYYP 534

Query: 506 QVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTW 565
           Q   P+  +    E +       DTLF+ FYY+  TYQQY+A +ELKKQSWR+H+KY TW
Sbjct: 535 QQPLPLFDSSEMTELV-----DPDTLFYMFYYRPGTYQQYIAGQELKKQSWRFHKKYTTW 589

Query: 566 FQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDE 618
           FQRHEEPK+  DEFE G+Y YFDF       +  W QR K +F F Y YLED+
Sbjct: 590 FQRHEEPKMITDEFESGSYRYFDF-------EGDWVQRKKADFRFTYQYLEDD 635

Acts as component of the CCR4-NOT core complex, which in the nucleus seems to be a general transcription factor, and in the cytoplasm the major mRNA deadenylase involved in mRNA turnover. The NOT protein subcomplex negatively regulates the basal and activated transcription of many genes. Preferentially affects TC-type TATA element-dependent transcription. Could directly or indirectly inhibit component(s) of the general transcription machinery.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q52JK6|VIP2_NICBE Probable NOT transcription complex subunit VIP2 (Fragment) OS=Nicotiana benthamiana GN=VIP2 PE=1 SV=1

 Score = 72.0 bits (175), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 87/212 (41%), Gaps = 25/212 (11%)

Query: 412 AQVVRDTDLSPGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQ 471
            Q  RD  L   Q   +  P G LG++    +SD      +L G  +++ G+     N+ 
Sbjct: 412 GQPFRDQSLKSMQSQVAPDPFGMLGLLSVIRMSDPDLTSLAL-GIDLTTLGL-----NLN 465

Query: 472 MLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTL 531
             E+ +     P   E A+      P  T P     + P   N A++ +  LD     TL
Sbjct: 466 SAENLYKTFGSPWSDEPAKG----DPEFTVPQCYYAKQPPPLNQAYFSKFQLD-----TL 516

Query: 532 FFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQR--HEEPKVANDEFEQGTYVYFDF 589
           F+ FY       Q  AA EL  + W YHR++  WF R  + EP V  + +E+G+Y+ FD 
Sbjct: 517 FYIFYSMPKDEAQLYAANELYNRGWFYHREHRLWFMRVANMEPLVKTNAYERGSYICFD- 575

Query: 590 HIANDDLQHGWCQRIKTEFTFEYNYLEDELIV 621
                   + W    K  F      LE   ++
Sbjct: 576 -------PNTWETIHKDNFVLHCEMLEKRPVL 600

Transcriptional regulator required for Agrobacterium-mediated stable genetic transformation by T-DNA integration in host genome, but not for T-DNA transient expression.

Nicotiana benthamiana (taxid: 4100)

>sp|Q9NZN8|CNOT2_HUMAN CCR4-NOT transcription complex subunit 2 OS=Homo sapiens GN=CNOT2 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 19/132 (14%)

Query: 497 PAVTPPSYPQ-----VQAPIVSNPAFWERLS---LDSYGTDTLFFAFYYQQNTYQQYLAA 548
           P  + P  PQ     V +  ++N    ++L+   L  YG D LF+ +Y       Q LAA
Sbjct: 402 PWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAA 461

Query: 549 KELKKQSWRYHRKYNTWFQRH--EEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKT 606
            EL  + WRYH++   W  R    EP +  + +E+GTY +FD           W +++  
Sbjct: 462 VELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDC--------LNW-RKVAK 512

Query: 607 EFTFEYNYLEDE 618
           EF  EY+ LE+ 
Sbjct: 513 EFHLEYDKLEER 524

The CCR4-NOT complex functions as general transcription regulation complex.

Homo sapiens (taxid: 9606)

>sp|Q8C5L3|CNOT2_MOUSE CCR4-NOT transcription complex subunit 2 OS=Mus musculus GN=Cnot2 PE=2 SV=2

 Score = 69.7 bits (169), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 19/132 (14%)

Query: 497 PAVTPPSYPQ-----VQAPIVSNPAFWERLS---LDSYGTDTLFFAFYYQQNTYQQYLAA 548
           P  + P  PQ     V +  ++N    ++L+   L  YG D LF+ +Y       Q LAA
Sbjct: 402 PWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAA 461

Query: 549 KELKKQSWRYHRKYNTWFQRH--EEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKT 606
            EL  + WRYH++   W  R    EP +  + +E+GTY +FD           W +++  
Sbjct: 462 VELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDC--------LNW-RKVAK 512

Query: 607 EFTFEYNYLEDE 618
           EF  EY+ LE+ 
Sbjct: 513 EFHLEYDKLEER 524

The CCR4-NOT complex functions as general transcription regulation complex.

Mus musculus (taxid: 10090)

>sp|Q9FPW4|VIP2_ARATH Probable NOT transcription complex subunit VIP2 OS=Arabidopsis thaliana GN=VIP2 PE=1 SV=2

 Score = 60.8 bits (146), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 35/69 (50%)

Query: 520 RLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEF 579
           R S   +  + LF+ FY       Q  AA EL ++ W YH++   WF R  EP V    +
Sbjct: 518 RASFKRFSYELLFYTFYSMPKDEAQLYAADELYERGWFYHKELRVWFFRVGEPLVRAATY 577

Query: 580 EQGTYVYFD 588
           E+GTY Y D
Sbjct: 578 ERGTYEYLD 586

Transcriptional regulator required for Agrobacterium-mediated stable genetic transformation by T-DNA integration in host genome, but not for T-DNA transient expression.

Arabidopsis thaliana (taxid: 3702)

>sp|P06100|NOT2_YEAST General negative regulator of transcription subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC36 PE=1 SV=1

 Score = 56.6 bits (135), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 76/170 (44%), Gaps = 44/170 (25%)

Query: 473 LESAFYKLPQPKDS--------------ERARSYI-PRHPAVTPPSY---PQVQAPIVSN 514
           L S  Y L  P+DS              E +RS + PR    TP S+   P V    V+ 
Sbjct: 34  LSSMLYSLGIPRDSQDHRVLDTFQSPWAETSRSEVEPRF--FTPESFTNIPGVLQSTVTP 91

Query: 515 PAF------WERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQR 568
           P F       +R++L  +  +TLFF FY    T  Q L   EL+K++WRYH+    W  +
Sbjct: 92  PCFNSIQNDQQRVAL--FQDETLFFLFYKHPGTVIQELTYLELRKRNWRYHKTLKAWLTK 149

Query: 569 --HEEPKVANDEF-EQGTYVYFDFHIANDDLQHGW--CQRIKTEFTFEYN 613
               EP V+ D   E+G+YV+FD           W  CQR   +F   YN
Sbjct: 150 DPMMEPIVSADGLSERGSYVFFD--------PQRWEKCQR---DFLLFYN 188

Acts as component of the CCR4-NOT core complex, which in the nucleus seems to be a general transcription factor, and in the cytoplasm the major mRNA deadenylase involved in mRNA turnover. NOT2 is required for the integrity of the complex. The NOT protein subcomplex negatively regulates the basal and activated transcription of many genes. Preferentially affects TC-type TATA element-dependent transcription. Could directly or indirectly inhibit component(s) of the general transcription machinery.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P87240|NOT2_SCHPO General negative regulator of transcription subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=not2 PE=1 SV=2

 Score = 55.5 bits (132), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 20/120 (16%)

Query: 501 PPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHR 560
           P  Y  V  P   +  F        +  +TLF+ FY       Q  AA+EL  ++WR+H+
Sbjct: 196 PACYKNVNPPPAISKIF-------QFSDETLFYIFYTMPRDVMQEAAAQELTNRNWRFHK 248

Query: 561 KYNTWFQRH--EEPKVANDEFEQGTYVYFD-FHIANDDLQHGWCQRIKTEFTFEYNYLED 617
           +   W       +P     +FE+G Y++FD  H         W +RIK +F   Y  LED
Sbjct: 249 ELRVWLTPVPGMKPLQRTPQFERGYYMFFDPIH---------W-KRIKKDFLLMYAALED 298

Acts as component of the CCR4-NOT core complex, which in the nucleus seems to be a general transcription factor, and in the cytoplasm the major mRNA deadenylase involved in mRNA turnover. NOT2 is required for the integrity of the complex. The NOT protein subcomplex negatively regulates the basal and activated transcription of many genes. Preferentially affects TC-type TATA element-dependent transcription. Could directly or indirectly inhibit component(s) of the general transcription machinery.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q94547|RGA_DROME Regulator of gene activity OS=Drosophila melanogaster GN=Rga PE=2 SV=2

 Score = 51.6 bits (122), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 42/96 (43%), Gaps = 16/96 (16%)

Query: 500 TPPSYPQVQAPIVSNPAFWERLS---LDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSW 556
            PP Y       + N A  ++L+   L     D LFF FY       Q +AA EL  + W
Sbjct: 466 VPPEY-------LINFAIRDKLTAPVLKKLQEDLLFFLFYTNIGDMMQLMAAAELHSREW 518

Query: 557 RYHRKYNTWFQRHEEPKV----ANDEFEQGTYVYFD 588
           RYH +   W  R   P +     N   E+GT+ YFD
Sbjct: 519 RYHVEEKIWITR--IPGIDQYEKNGTKERGTFYYFD 552

Essential for viability. Acts as a suppressor of position effect variegation (PEV) at the white locus and regulates the expression of several unrelated genes.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	621
255568948	889	conserved hypothetical protein [Ricinus	0.983	0.687	0.717	0.0
297739742	897	unnamed protein product [Vitis vinifera]	0.995	0.688	0.740	0.0
359481840	888	PREDICTED: uncharacterized protein LOC10	0.967	0.676	0.732	0.0
224125888	886	predicted protein [Populus trichocarpa]	0.979	0.686	0.716	0.0
356560386	884	PREDICTED: uncharacterized protein LOC10	0.966	0.678	0.661	0.0
356571684	882	PREDICTED: uncharacterized protein LOC10	0.950	0.668	0.654	0.0
356559538	892	PREDICTED: uncharacterized protein LOC10	0.974	0.678	0.642	0.0
224144772	895	predicted protein [Populus trichocarpa]	0.982	0.681	0.676	0.0
449446768	900	PREDICTED: uncharacterized protein LOC10	0.988	0.682	0.636	0.0
357508635	901	CCR4-NOT transcription complex subunit [	0.950	0.654	0.651	0.0

>gi|255568948|ref|XP_002525444.1| conserved hypothetical protein [Ricinus communis] gi|223535257|gb|EEF36934.1| conserved hypothetical protein [Ricinus communis]

 Score =  872 bits (2254), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/627 (71%), Positives = 513/627 (81%), Gaps = 16/627 (2%)

Query: 3   ATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTA-STPAVGPATPISIN 61
           AT  S  Q  T+VQEQ EDTASQDSN D+ ARTPPAKSS +GS+A STP V  +TPIS+ 
Sbjct: 271 ATATSLQQPATNVQEQAEDTASQDSNPDIVARTPPAKSSTIGSSAASTPTVNHSTPISVG 330

Query: 62  VPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPS 121
           +PA TLS AS +S +LPGSSSVRG  +N  P + S P +L +S KEE+   FP RR SP+
Sbjct: 331 LPAHTLSGASASS-ILPGSSSVRGALEN-APANPSSPASLANSVKEEENAGFPVRRPSPA 388

Query: 122 LTD---VRVMGRGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGAEERLGS 178
           L D    R +GRG + SQP SSIPLSS  AVPSNG +GAVP  SD+AKRNIL  ++RLGS
Sbjct: 389 LVDPGLARGIGRGAIYSQPPSSIPLSSG-AVPSNGAVGAVPTASDIAKRNILSTDDRLGS 447

Query: 179 SGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSM-GMQWRTGNS 237
            GMVQ L SPLSNRMIL QA K  DGTG +DSNN GE  A+ GRVF+P + GMQWR G+S
Sbjct: 448 GGMVQPLASPLSNRMILPQAGKVGDGTGIVDSNNVGEAAAIGGRVFSPLVPGMQWRPGSS 507

Query: 238 FQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMP--LGGN-KQFSSQQNPL 294
           FQNQNE GQFR RTEI PDQREKFLQR QQVQQQG + LLGMP   GGN KQFS+QQN L
Sbjct: 508 FQNQNEQGQFRARTEITPDQREKFLQRFQQVQQQGPNTLLGMPPLAGGNHKQFSAQQNSL 567

Query: 295 LQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADV 354
           LQQFNSQ SS+S QA LGLG QAPG+N++TSA+LQ  PN + QQS+QQ +MS   KDAD+
Sbjct: 568 LQQFNSQSSSVS-QATLGLGSQAPGINAITSAALQP-PNTLLQQSTQQVVMS---KDADI 622

Query: 355 SHLKVEEPQQPQNLPEESTPESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQV 414
              KVEE QQPQNLP++S  ESA   GL KNL++ED+LK PY +D+ TG S +L EP Q+
Sbjct: 623 GLSKVEEQQQPQNLPDDSIAESAPMSGLSKNLMNEDELKTPYTMDTPTGASGTLAEPVQL 682

Query: 415 VRDTDLSPGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLE 474
            RDTDLSPGQP+QSSQPS GLGVIGRRSVSDLGAIGD+L G+ V+SG MHDQ+YN+QMLE
Sbjct: 683 PRDTDLSPGQPIQSSQPSTGLGVIGRRSVSDLGAIGDNLGGSAVNSGAMHDQLYNLQMLE 742

Query: 475 SAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFA 534
           +A+++LPQPKDSERARSY PRHP  TPPSYPQVQAPIV+NPAFWERL++DSYGTDTLFFA
Sbjct: 743 AAYHRLPQPKDSERARSYTPRHPTATPPSYPQVQAPIVNNPAFWERLTIDSYGTDTLFFA 802

Query: 535 FYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIAND 594
           FYYQQNT+QQYLAAKELKKQSWRYHRKYNTWFQRHEEPK+A DE+EQGTYVYFDFHIAND
Sbjct: 803 FYYQQNTHQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKIATDEYEQGTYVYFDFHIAND 862

Query: 595 DLQHGWCQRIKTEFTFEYNYLEDELIV 621
           DLQHGWCQRIKTEFTFEYNYLEDEL+V
Sbjct: 863 DLQHGWCQRIKTEFTFEYNYLEDELLV 889

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739742|emb|CBI29924.3| unnamed protein product [Vitis vinifera]

 Score =  870 bits (2248), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/631 (74%), Positives = 535/631 (84%), Gaps = 13/631 (2%)

Query: 1   MPATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTAS-TPAVGPATPIS 59
           +PATV S  QQ TS+QEQ E+TASQDSNS++  RTPPAK+S +GS+AS TP    ATPI 
Sbjct: 270 IPATVTSPLQQSTSIQEQSEETASQDSNSEIGPRTPPAKNSVIGSSASSTPTGSHATPIP 329

Query: 60  INVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSS 119
           +NV A  LS AS    +LP S+SVRGV +N G   SSP VN++SS KEE++ +FPGRRSS
Sbjct: 330 LNVSAHNLS-ASPAPTILPSSTSVRGVLENAGTAISSP-VNVSSSAKEEEIASFPGRRSS 387

Query: 120 PSLTD---VRVMGRGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGAEERL 176
           P+L +   VR +GRG  SSQPS+S+PLSS   +PSNG LGAVP  +D++KR+ LGA+ERL
Sbjct: 388 PALVETGLVRGIGRGVPSSQPSTSVPLSSGITIPSNGGLGAVPSANDMSKRSTLGADERL 447

Query: 177 GSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSM--GMQWRT 234
           G  GMVQ LVSPLSNRMIL Q AK NDGTG  DS++ GE   +AGRVF+PS+  GMQWR 
Sbjct: 448 GGGGMVQPLVSPLSNRMILPQTAKTNDGTGLADSSSVGEAAVIAGRVFSPSVVPGMQWRP 507

Query: 235 GNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMP--LGGN-KQFSSQQ 291
           G+SFQNQNE GQFRGRTEI  DQ+EKFLQRLQQVQQQ  S +LGMP   GGN KQFS+QQ
Sbjct: 508 GSSFQNQNESGQFRGRTEITLDQKEKFLQRLQQVQQQTQSTILGMPPLSGGNHKQFSAQQ 567

Query: 292 -NPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQK 350
            NPLLQQFNSQ SS+S Q GLG+GVQAPG+N+VTSA++QQQP  IHQQS+QQ L+S G K
Sbjct: 568 QNPLLQQFNSQSSSVSPQVGLGVGVQAPGLNTVTSAAIQQQPGSIHQQSNQQALLSTGPK 627

Query: 351 DADVSHLKVEEPQQPQNLPEESTPESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTE 410
           DADV H+K E+ QQ QN+ ++ST ESA S  LGKNL++EDDLKAPYA+D+S GVS SLTE
Sbjct: 628 DADVGHVKAEDQQQQQNVSDDSTMESAPS-SLGKNLMNEDDLKAPYAMDTSAGVSGSLTE 686

Query: 411 PAQVVRDTDLSPGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNM 470
           P+QV RDTDLSPGQP+QS+QPSG LGVIGRRS+SDLGAIGD+LSG+ V+SGGMHDQ+YN+
Sbjct: 687 PSQVPRDTDLSPGQPVQSNQPSGSLGVIGRRSISDLGAIGDTLSGSAVNSGGMHDQLYNL 746

Query: 471 QMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDT 530
           QMLE+AFYKLPQPKDSERAR+Y PRHPAVTPPSYPQVQAPIV+NPAFWERL LD++GTDT
Sbjct: 747 QMLEAAFYKLPQPKDSERARNYTPRHPAVTPPSYPQVQAPIVNNPAFWERLGLDTFGTDT 806

Query: 531 LFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFH 590
           LFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVA DEFEQGTYVYFDFH
Sbjct: 807 LFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVATDEFEQGTYVYFDFH 866

Query: 591 IANDDLQHGWCQRIKTEFTFEYNYLEDELIV 621
           IANDDLQHGWCQRIKTEFTFEYNYLEDELIV
Sbjct: 867 IANDDLQHGWCQRIKTEFTFEYNYLEDELIV 897

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481840|ref|XP_003632676.1| PREDICTED: uncharacterized protein LOC100253711 [Vitis vinifera]

 Score =  851 bits (2198), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/620 (73%), Positives = 522/620 (84%), Gaps = 19/620 (3%)

Query: 12  VTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTAS-TPAVGPATPISINVPAQTLSNA 70
           +TS+QEQ E+TASQDSNS++  RTPPAK+S +GS+AS TP    ATPI +NV A  LS A
Sbjct: 278 ITSIQEQSEETASQDSNSEIGPRTPPAKNSVIGSSASSTPTGSHATPIPLNVSAHNLS-A 336

Query: 71  SNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTD---VRV 127
           S    +LP S+SVRGV +N G   SSP VN++SS KEE++ +FPGRRSSP+L +   VR 
Sbjct: 337 SPAPTILPSSTSVRGVLENAGTAISSP-VNVSSSAKEEEIASFPGRRSSPALVETGLVRG 395

Query: 128 MGRGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVS 187
           +GRG  SSQPS+S+PLSS   +PSNG LGAVP  +D++KR+ LGA+ERLG  GMVQ LVS
Sbjct: 396 IGRGVPSSQPSTSVPLSSGITIPSNGGLGAVPSANDMSKRSTLGADERLGGGGMVQPLVS 455

Query: 188 PLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSM--GMQWRTGNSFQNQNEPG 245
           PLSNRMIL Q AK NDGTG  DS++ GE   +AGRVF+PS+  GMQWR G+SFQNQNE  
Sbjct: 456 PLSNRMILPQTAKTNDGTGLADSSSVGEAAVIAGRVFSPSVVPGMQWRPGSSFQNQNE-- 513

Query: 246 QFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMP--LGGN-KQFSSQQ-NPLLQQFNSQ 301
            FRGRTEI  DQ+EKFLQRLQQVQQQ  S +LGMP   GGN KQFS+QQ NPLLQQ    
Sbjct: 514 SFRGRTEITLDQKEKFLQRLQQVQQQTQSTILGMPPLSGGNHKQFSAQQQNPLLQQV--- 570

Query: 302 GSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEE 361
            SS+S Q GLG+GVQAPG+N+VTSA++QQQP  IHQQS+QQ L+S G KDADV H+K E+
Sbjct: 571 -SSVSPQVGLGVGVQAPGLNTVTSAAIQQQPGSIHQQSNQQALLSTGPKDADVGHVKAED 629

Query: 362 PQQPQNLPEESTPESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLS 421
            QQ QN+ ++ST ESA S  LGKNL++EDDLKAPYA+D+S GVS SLTEP+QV RDTDLS
Sbjct: 630 QQQQQNVSDDSTMESAPS-SLGKNLMNEDDLKAPYAMDTSAGVSGSLTEPSQVPRDTDLS 688

Query: 422 PGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLP 481
           PGQP+QS+QPSG LGVIGRRS+SDLGAIGD+LSG+ V+SGGMHDQ+YN+QMLE+AFYKLP
Sbjct: 689 PGQPVQSNQPSGSLGVIGRRSISDLGAIGDTLSGSAVNSGGMHDQLYNLQMLEAAFYKLP 748

Query: 482 QPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNT 541
           QPKDSERAR+Y PRHPAVTPPSYPQVQAPIV+NPAFWERL LD++GTDTLFFAFYYQQNT
Sbjct: 749 QPKDSERARNYTPRHPAVTPPSYPQVQAPIVNNPAFWERLGLDTFGTDTLFFAFYYQQNT 808

Query: 542 YQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWC 601
           YQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVA DEFEQGTYVYFDFHIANDDLQHGWC
Sbjct: 809 YQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVATDEFEQGTYVYFDFHIANDDLQHGWC 868

Query: 602 QRIKTEFTFEYNYLEDELIV 621
           QRIKTEFTFEYNYLEDELIV
Sbjct: 869 QRIKTEFTFEYNYLEDELIV 888

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125888|ref|XP_002319700.1| predicted protein [Populus trichocarpa] gi|222858076|gb|EEE95623.1| predicted protein [Populus trichocarpa]

 Score =  833 bits (2153), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/628 (71%), Positives = 514/628 (81%), Gaps = 20/628 (3%)

Query: 1   MPATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISI 60
           MPATV STH +   VQ+Q +DT SQDSNSD+ ARTPPAKSS VGS+A+    G   PIS+
Sbjct: 272 MPATVASTHHEGAVVQDQADDTTSQDSNSDIVARTPPAKSSMVGSSAAATPTGNHAPISV 331

Query: 61  NVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSP 120
           NV AQTL + S  SP LPGS+SVRGV +N  P + S P  L +S KEE++  FPGRRSSP
Sbjct: 332 NVQAQTLHDLSAASPTLPGSTSVRGVLENAAPFNPSSPATLGNSMKEEEIAGFPGRRSSP 391

Query: 121 SLTDV---RVMGRGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGAEERLG 177
           SL D    R +GRGGLSSQPSSSIPLS    +PSNG  G+VPL SD+AKRNILG ++R+G
Sbjct: 392 SLADAGLARGIGRGGLSSQPSSSIPLS-PVVIPSNGAHGSVPLASDIAKRNILGNDDRIG 450

Query: 178 SSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSM-GMQWRTGN 236
           S+GMVQ L SPLSNRMIL QA    DGT ++D+++AGE   M GRVF+P + GMQWR G+
Sbjct: 451 SAGMVQPLASPLSNRMILPQAG---DGTSAVDTSSAGEAATMGGRVFSPLVTGMQWRPGS 507

Query: 237 SFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMP--LGGN-KQFSSQQNP 293
           SFQNQNEPGQFR RTEIAPDQREKFLQRLQQVQQQGHSN+LGMP   GGN KQ+S+QQNP
Sbjct: 508 SFQNQNEPGQFRARTEIAPDQREKFLQRLQQVQQQGHSNILGMPPLTGGNHKQYSAQQNP 567

Query: 294 LLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDAD 353
           LLQQ  +  SS  +QA LGLGVQA G N+VTSA+LQQ PN IHQQSSQQ +MS G KDA 
Sbjct: 568 LLQQ-FNSQSSSVSQASLGLGVQASGFNTVTSAALQQ-PNSIHQQSSQQVVMSSGAKDA- 624

Query: 354 VSHLKVEEPQQPQNLPEESTPESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQ 413
                V+E Q  QNLPE+ST +SA + GLGK+L++ED+L +PYA+D+S G S SLTEP Q
Sbjct: 625 -----VDEQQLKQNLPEDSTTKSALTSGLGKSLVNEDELTSPYAMDTSAGASGSLTEPLQ 679

Query: 414 VVRDTDLSPGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQML 473
           V RD DLSPGQ LQSSQPS GLGVIGRRSVSDLGAIGD+L+G+ V+SG MH+Q+YN+QML
Sbjct: 680 VPRDIDLSPGQLLQSSQPSSGLGVIGRRSVSDLGAIGDNLTGSAVNSGAMHNQLYNLQML 739

Query: 474 ESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFF 533
           E+A++KLPQPKDSERARSYIPRHPA TPPSYPQVQ P+ SNPAFWERLS+ SYGTDTLFF
Sbjct: 740 EAAYHKLPQPKDSERARSYIPRHPAATPPSYPQVQLPMASNPAFWERLSMHSYGTDTLFF 799

Query: 534 AFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIAN 593
           AFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKV  DE+EQGTYVYFDFH+ N
Sbjct: 800 AFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVTTDEYEQGTYVYFDFHVGN 859

Query: 594 DDLQHGWCQRIKTEFTFEYNYLEDELIV 621
           +D Q GWCQRIKTEFTFEYNYLEDELIV
Sbjct: 860 EDKQ-GWCQRIKTEFTFEYNYLEDELIV 886

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560386|ref|XP_003548473.1| PREDICTED: uncharacterized protein LOC100783415 [Glycine max]

 Score =  763 bits (1971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/626 (66%), Positives = 495/626 (79%), Gaps = 26/626 (4%)

Query: 5   VISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPA 64
           +IS HQ  TSVQEQ +DT SQDSNSD+ A+TPP KS G+ S  STP    ATP+S+N+  
Sbjct: 276 LISNHQD-TSVQEQADDTESQDSNSDIVAKTPPPKSGGISSATSTPVGNHATPVSVNISG 334

Query: 65  QTLSNASNTSPV--LPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSL 122
             LS A    PV  LP S+SVR V +NT  +++S  VN ++STKEED+ +FP RR SPSL
Sbjct: 335 HNLSGA----PVAALPSSNSVRNVLENTN-VTNSSSVNQSTSTKEEDINSFPSRRPSPSL 389

Query: 123 TDVRVM-GRGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGM 181
           +D  ++  R  LS+Q ++S+PL S   V SN  LG+V   S++AKRNI+GA++RLGSSGM
Sbjct: 390 SDATLLRDRNSLSNQATASVPLGSGNMVSSNVALGSVSSASEIAKRNIMGADDRLGSSGM 449

Query: 182 VQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSM--GMQWRTGNSFQ 239
           VQ LVSPLSNR+IL QAAK NDG  S+DS+   E  A AGRVF+PS   GMQWR G+ FQ
Sbjct: 450 VQPLVSPLSNRLILPQAAKANDGIVSVDSSTVNE--AAAGRVFSPSGVPGMQWRPGSPFQ 507

Query: 240 NQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMP--LGGN-KQFSSQQ-NPLL 295
           NQN+    RGRTEIAPDQREKFLQ+ QQVQQ GHS LL MP  +GGN KQFS+QQ NPLL
Sbjct: 508 NQNDA--LRGRTEIAPDQREKFLQKYQQVQQ-GHSTLLNMPSLVGGNHKQFSAQQQNPLL 564

Query: 296 QQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVS 355
           QQFNS GSS+S+Q+G+GLGVQ+  +  ++SASLQQ PNP+H  SSQQ LM       DV 
Sbjct: 565 QQFNSHGSSVSSQSGIGLGVQSTSLGGISSASLQQPPNPVHSPSSQQPLM------PDVG 618

Query: 356 HLKVEEPQQPQNLPEESTPESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVV 415
           + K+EE QQ QN P++ST ES +S G+GKNLI+EDD K+ Y +DS   VSASL E AQ  
Sbjct: 619 NSKIEEQQQHQNFPDDSTIESIASTGIGKNLINEDDSKSAYTVDSPAAVSASLPESAQTS 678

Query: 416 RDTDLSPGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLES 475
           RD DLSPGQPLQS+Q +G LGVIGRR+ ++ GAIGD+ SG+ VSSGG+ DQ+YN+QMLE+
Sbjct: 679 RDIDLSPGQPLQSNQLTGNLGVIGRRNGAEHGAIGDNFSGSNVSSGGVRDQLYNLQMLEA 738

Query: 476 AFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAF 535
           A +K+P PKDSER R+Y P+HPA+TPPSYPQVQAPIV+NPAFWER+ L+ +GTDTLFFAF
Sbjct: 739 AHFKIPLPKDSERPRTYTPKHPAITPPSYPQVQAPIVNNPAFWERVGLEPFGTDTLFFAF 798

Query: 536 YYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDD 595
           YYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVA DE+EQGTYVYFDFHIANDD
Sbjct: 799 YYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVATDEYEQGTYVYFDFHIANDD 858

Query: 596 LQHGWCQRIKTEFTFEYNYLEDELIV 621
           +QHGWCQRIKTEFTFEYNYLED+L+V
Sbjct: 859 MQHGWCQRIKTEFTFEYNYLEDDLLV 884

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571684|ref|XP_003554004.1| PREDICTED: uncharacterized protein LOC100785965 [Glycine max]

 Score =  750 bits (1937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/622 (65%), Positives = 487/622 (78%), Gaps = 32/622 (5%)

Query: 13  TSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASN 72
           TSVQEQ +DT SQDSNSD+ A+TPP KS G+ S  STP V  ATP+S+NV    LS+A  
Sbjct: 280 TSVQEQADDTTSQDSNSDIVAKTPPCKSGGISSATSTP-VDHATPVSVNVSGHNLSSAP- 337

Query: 73  TSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVM-GRG 131
              VLPGS+SVR V +NT  I+SS  VN ++ST EE++ +FP RR SPSL+D  ++ GR 
Sbjct: 338 -VAVLPGSNSVRNVLENTNVINSSS-VNQSTSTNEEEINSFPSRRPSPSLSDATLLKGRS 395

Query: 132 GLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSN 191
            LS+Q ++SIPL S   V SNG LG+V   S++AKRNILGA++RLGSSGMVQ LVSPLSN
Sbjct: 396 SLSNQATASIPLGSGNMVSSNGALGSVSSASEIAKRNILGADDRLGSSGMVQPLVSPLSN 455

Query: 192 RMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSM--GMQWRTGNSFQNQNEPGQFRG 249
           R+IL QAAK NDGT  +DS+   E  A +GRVF+PS   GMQWR G+ FQNQN+    RG
Sbjct: 456 RLILPQAAKANDGTVLVDSSTVNE--AASGRVFSPSGVPGMQWRPGSPFQNQNDA--LRG 511

Query: 250 RTEIAPDQREKFLQRLQQVQQ------QGHSNLLGMP--LGGN-KQFSSQQ-NPLLQQFN 299
           RTEIAPDQREKFLQ+ QQVQQ        +S LL MP  +GGN KQFS+QQ NPLLQQ  
Sbjct: 512 RTEIAPDQREKFLQKYQQVQQGNSTLLNMNSTLLNMPSLVGGNHKQFSAQQQNPLLQQ-- 569

Query: 300 SQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKV 359
                    +G+GLGVQ+  +  ++SASLQQ PNP+H  SSQQ LM G   DADV + K+
Sbjct: 570 ---------SGIGLGVQSTSLVGISSASLQQPPNPVHSPSSQQPLMPGVSIDADVGNSKI 620

Query: 360 EEPQQPQNLPEESTPESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTD 419
           EE QQ QN P++ST ES +S G+GKNLI+EDD K+ +A+DS  GVSASL E AQ  RD D
Sbjct: 621 EEQQQHQNFPDDSTTESTASTGIGKNLINEDDSKSAFALDSPAGVSASLPESAQTSRDID 680

Query: 420 LSPGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYK 479
           LSPGQPLQ +QP+G LGVIGRR+ ++ GAIGD+ SG++VSSGG+ DQ+YN+QMLE+A +K
Sbjct: 681 LSPGQPLQPNQPTGNLGVIGRRNGAEHGAIGDNFSGSSVSSGGVRDQLYNLQMLEAAHFK 740

Query: 480 LPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQ 539
           +P PKDSER R+Y P+HP +TPPSYPQVQAPIV+NPAFWER+ L+ +GTDTLFFAFYYQQ
Sbjct: 741 IPLPKDSERPRTYTPKHPTITPPSYPQVQAPIVNNPAFWERVGLEPFGTDTLFFAFYYQQ 800

Query: 540 NTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHG 599
           NTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPK+A DE+EQGTYVYFDFHIANDD+QHG
Sbjct: 801 NTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKIATDEYEQGTYVYFDFHIANDDMQHG 860

Query: 600 WCQRIKTEFTFEYNYLEDELIV 621
           WCQRIKTEFTFEYNYLED+L+V
Sbjct: 861 WCQRIKTEFTFEYNYLEDDLLV 882

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559538|ref|XP_003548056.1| PREDICTED: uncharacterized protein LOC100819202 [Glycine max]

 Score =  747 bits (1928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/618 (64%), Positives = 492/618 (79%), Gaps = 13/618 (2%)

Query: 13  TSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASN 72
           +S QEQ +DTASQDSNSD  ARTPP KSS V  TA+TPA   ATP+S+NVP   LS+   
Sbjct: 279 SSFQEQADDTASQDSNSDFVARTPPPKSSIVSPTATTPAGNFATPVSMNVPVPNLSSPPA 338

Query: 73  TSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDV---RVMG 129
            + V+PGS+SV+   + + P+ +S  VN +S+ KEE++ +FPG+R SPSL+DV   R + 
Sbjct: 339 IASVMPGSNSVQSSLEISSPVDASSFVNQSSTMKEEEINSFPGQRPSPSLSDVTLVRNIS 398

Query: 130 RGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPL 189
           R  +S+Q ++SIPL+S   V SNG LG+VP   ++ KRNIL  ++RLGS+GMVQ LVSPL
Sbjct: 399 RNSVSNQATNSIPLASGNMVSSNGPLGSVPSAPEITKRNILVGDDRLGSNGMVQPLVSPL 458

Query: 190 SNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSM--GMQWRTGNSFQNQNEPGQF 247
           SNRMI+ Q A+ NDGT S+DS++  E   ++GRVF+PS   GMQWR+G+ FQNQN+    
Sbjct: 459 SNRMIMPQVARPNDGTSSVDSSSVNEAATVSGRVFSPSAVPGMQWRSGSPFQNQND--VV 516

Query: 248 RGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMP--LGGN-KQFSSQQ-NPLLQQFNSQGS 303
           RGRTEIAPDQRE++LQ+LQQVQQQG S +L MP  + GN KQFS+QQ NPLLQQFNSQGS
Sbjct: 517 RGRTEIAPDQRERYLQKLQQVQQQGQSAILNMPSFVAGNPKQFSAQQQNPLLQQFNSQGS 576

Query: 304 SISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPQ 363
           S+++Q+G+GLGVQ+PG++ + S SL Q PN +H  SSQQ+L+    KDADV + K +EPQ
Sbjct: 577 SVASQSGVGLGVQSPGLSGIASTSLPQPPNSVHSPSSQQSLLLVVSKDADVGNSKGDEPQ 636

Query: 364 QPQNLPEESTPESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPG 423
           Q Q  P++S  ES +S G+GKN ++ED+LK+ YA+DS  GV ASL EPAQ  RD DLSPG
Sbjct: 637 Q-QIFPDDSGTESTASNGIGKNFVNEDELKSTYAVDSPAGVPASLPEPAQTSRDIDLSPG 695

Query: 424 QPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQP 483
            PLQS+Q +G LGVIGR S +DLGA+GD+ S +T +SGG+ DQ+Y +QMLE+A  KLPQP
Sbjct: 696 LPLQSNQRTGNLGVIGRSS-TDLGALGDNFSASTANSGGVRDQLYYLQMLEAAHLKLPQP 754

Query: 484 KDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQ 543
           KDSER R+Y P+HP +TPPS+PQVQAPIV+NPAFWER+ ++ YGTDTLFFAFYYQQNTYQ
Sbjct: 755 KDSERPRTYTPKHPTITPPSFPQVQAPIVNNPAFWERVGIEQYGTDTLFFAFYYQQNTYQ 814

Query: 544 QYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQR 603
           QY+AAKELKKQSWRYHRKYNTWFQRHEEPKVA DE+EQGTYVYFDFHIANDDLQHGWCQR
Sbjct: 815 QYMAAKELKKQSWRYHRKYNTWFQRHEEPKVATDEYEQGTYVYFDFHIANDDLQHGWCQR 874

Query: 604 IKTEFTFEYNYLEDELIV 621
           IKT+FTFEYNYLEDE IV
Sbjct: 875 IKTDFTFEYNYLEDEPIV 892

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144772|ref|XP_002325409.1| predicted protein [Populus trichocarpa] gi|222862284|gb|EEE99790.1| predicted protein [Populus trichocarpa]

 Score =  731 bits (1887), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/630 (67%), Positives = 500/630 (79%), Gaps = 20/630 (3%)

Query: 2   PATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISIN 61
           PATV S   Q    QEQ +DTASQDSNSD+ ARTP AKS  VGS+A++   G   PIS+N
Sbjct: 276 PATVSSPPHQSVVGQEQADDTASQDSNSDIVARTP-AKSGMVGSSAASTPTGNHAPISVN 334

Query: 62  VPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSS--PPVNLTSSTKEEDVGNFPGRRSS 119
           V  QTL +    SP LPGSSSVRGV +N  P + S     N  +S K+E++  FPG RSS
Sbjct: 335 VQVQTLPSLLAVSPTLPGSSSVRGVLENAAPANPSHVTLTNAANSAKDEEIAGFPGHRSS 394

Query: 120 -PSLTDV---RVMGRGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGAEER 175
            PSL D    R +GRGGLSSQPSSSI LS    +PSNG LG+VP  SD+AKRN+LG ++R
Sbjct: 395 SPSLVDTGLARGIGRGGLSSQPSSSISLSPGV-IPSNGALGSVPSASDIAKRNVLGTDDR 453

Query: 176 LGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSM-GMQWRT 234
           LGS GMVQ  VSPLSNRM+L  A+K +DGTG++DS+NAG+   ++GRVF+P + GMQWR 
Sbjct: 454 LGSGGMVQPSVSPLSNRMMLPHASKASDGTGAVDSSNAGDAATLSGRVFSPLVTGMQWRP 513

Query: 235 GNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMP---LGGNKQFSSQQ 291
           G+SFQ+QNEPGQFR RTEIAPDQREKFLQRLQQVQQQGHSN+LGMP    G +KQF +QQ
Sbjct: 514 GSSFQSQNEPGQFRARTEIAPDQREKFLQRLQQVQQQGHSNILGMPPLASGNHKQFPTQQ 573

Query: 292 NPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKD 351
           NPLLQQ  +  SS  +Q  LG+GVQA G N+ TSA+LQQ PN IHQQ++QQ +MS     
Sbjct: 574 NPLLQQ-FNSQSSSISQGSLGIGVQAAGFNTATSAALQQ-PNSIHQQANQQVVMS----- 626

Query: 352 ADVSHLKVEEPQQPQNLPEESTPESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEP 411
           ++V H  VEE Q  QNLPE+S+ ESA + GLGK+L++ED+L A YA+D+S G S SLTE 
Sbjct: 627 SEVGHPSVEEQQLKQNLPEDSSTESAPTSGLGKSLVNEDELTASYAMDTSAGASGSLTES 686

Query: 412 AQVVRDTDLSPGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQ 471
            QV RD DLSPGQPLQSSQPS  LGVIGRRSVSDLGAIGD+++G+ +++G MH+Q YN +
Sbjct: 687 VQVPRDIDLSPGQPLQSSQPSSSLGVIGRRSVSDLGAIGDNINGSAINAGAMHNQSYNFE 746

Query: 472 MLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTL 531
           ML++A++KLPQPKDSERARSYIPRHPA TPPSYPQVQAP+ SNPAFWERLS+DS GTDTL
Sbjct: 747 MLDAAYHKLPQPKDSERARSYIPRHPAATPPSYPQVQAPMASNPAFWERLSMDSVGTDTL 806

Query: 532 FFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHI 591
           FFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKV  DE+EQGTYVYFDFH+
Sbjct: 807 FFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVTTDEYEQGTYVYFDFHV 866

Query: 592 ANDDLQHGWCQRIKTEFTFEYNYLEDELIV 621
            N+D Q GWCQRIKTEFTF+YNYLEDEL V
Sbjct: 867 GNEDKQ-GWCQRIKTEFTFQYNYLEDELSV 895

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446768|ref|XP_004141143.1| PREDICTED: uncharacterized protein LOC101206210 [Cucumis sativus] gi|449509538|ref|XP_004163617.1| PREDICTED: uncharacterized LOC101206210 [Cucumis sativus]

 Score =  717 bits (1851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/630 (63%), Positives = 481/630 (76%), Gaps = 16/630 (2%)

Query: 2   PATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTA-STPAVGPATPISI 60
           P T   +HQQ T + +Q +D+   D N D+  +TPP+K+S +GS+A +TP    A   S+
Sbjct: 273 PVTAAPSHQQTTGLPDQVDDSTLPDGNIDILLKTPPSKNSVLGSSAATTPTGNQAASSSL 332

Query: 61  NVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSP 120
           N      S  S TS +LPGSS+VR V + T   +SSP VN+ +S K+E++ +FPGR+ SP
Sbjct: 333 NGAVHG-SGISATSSILPGSSAVRAVLETTAAPNSSP-VNMPTSAKDEEIASFPGRKLSP 390

Query: 121 SLTDVRV--MGRGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGAEERLGS 178
           S + +    MGRG +++QP S+   +S   VPSN  LG V   S+V KRNI+G EER GS
Sbjct: 391 SESGLVRGGMGRGVIANQPPSTSSHTSGIVVPSNITLGNVSSASEVTKRNIMGVEERAGS 450

Query: 179 SGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSM--GMQWRTGN 236
            G+VQS+VSPLSNR+ L   AK +DGT  +D  +  +  A+ GRVF+P++   MQWR G+
Sbjct: 451 -GIVQSVVSPLSNRLALPTTAKVSDGTTMVDPTSVSDAAAIGGRVFSPTVVSSMQWRPGS 509

Query: 237 SFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQ---FSSQQNP 293
           SFQN NE GQFRGR EIAPDQREKFLQRLQQVQQQGHS LLGM LGG       S QQ+ 
Sbjct: 510 SFQNPNEGGQFRGRAEIAPDQREKFLQRLQQVQQQGHSTLLGMTLGGGNHKQFSSQQQSS 569

Query: 294 LLQQFNSQGSSISAQAGLGLGVQAPGMN--SVTSASLQQQPNPIHQQSSQQTLMSGGQKD 351
           LLQQFNSQ SS+S+QAGLG+GVQAPG+N  +VTS SLQQQPN   QQS+QQ L + G KD
Sbjct: 570 LLQQFNSQNSSVSSQAGLGIGVQAPGVNPVAVTSGSLQQQPNSF-QQSNQQALTTSGAKD 628

Query: 352 ADVSHLKVEEPQQPQNLPE--ESTPESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLT 409
           +DV H KVEE QQ Q      E T +SA+   LGKNL+ +DDLK  Y +D+  G++ASLT
Sbjct: 629 SDVVHSKVEEEQQQQQQQSLLEDTTDSAAVSVLGKNLMSDDDLKGSYTVDTPVGITASLT 688

Query: 410 EPAQVVRDTDLSPGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYN 469
           E A V R+ DLSPGQPLQ  QPSGGLGVIGRRSVSDLGAIGD+L G+++++GGMHDQ YN
Sbjct: 689 ETASVTREDDLSPGQPLQPGQPSGGLGVIGRRSVSDLGAIGDNLGGSSMTTGGMHDQFYN 748

Query: 470 MQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTD 529
           +QMLE+AFYKLPQPKDSER RSY PRHPA+TPPSYPQVQAPI++NPA W+RL L++YGTD
Sbjct: 749 LQMLEAAFYKLPQPKDSERPRSYTPRHPAITPPSYPQVQAPIINNPALWDRLGLETYGTD 808

Query: 530 TLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDF 589
           TLFFAFYYQ NTYQQYLAA+ELKKQSWRYHRKY TWFQRHEEPKVA DE+EQGTYVYFDF
Sbjct: 809 TLFFAFYYQPNTYQQYLAARELKKQSWRYHRKYQTWFQRHEEPKVATDEYEQGTYVYFDF 868

Query: 590 HIANDDLQHGWCQRIKTEFTFEYNYLEDEL 619
           H+ NDDLQHGWCQRIKTEFTFEYNYLEDEL
Sbjct: 869 HVNNDDLQHGWCQRIKTEFTFEYNYLEDEL 898

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357508635|ref|XP_003624606.1| CCR4-NOT transcription complex subunit [Medicago truncatula] gi|124365585|gb|ABN09819.1| Not CCR4-Not complex component, N-terminal; tRNA-binding arm [Medicago truncatula] gi|355499621|gb|AES80824.1| CCR4-NOT transcription complex subunit [Medicago truncatula]

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/611 (65%), Positives = 473/611 (77%), Gaps = 21/611 (3%)

Query: 17  EQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPV 76
           EQ ++TASQDSNSD+ A+TPP KS G+ S+ STP    ATP S+NV    LS+A   + +
Sbjct: 305 EQADETASQDSNSDIVAKTPPPKSGGISSSTSTPTGNHATPASVNVSGLNLSSAP-AAAI 363

Query: 77  LPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVR-VMGRGGLSS 135
           LPGS+SVR + +N         VN ++S KEE++ NFP RR SPSL+D   V GR  LS+
Sbjct: 364 LPGSNSVRNILENA-------IVNQSTSPKEEEINNFPTRRPSPSLSDAALVRGRNSLSN 416

Query: 136 QPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMIL 195
           Q ++SIPL S   V S G LG VP  S++ KRNILGA++RLGSSGMVQ LVSPLSNR+IL
Sbjct: 417 QATASIPLGSGNTVSSIGALGVVPSASEITKRNILGADDRLGSSGMVQPLVSPLSNRLIL 476

Query: 196 SQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSM--GMQWRTGNSFQNQNEPGQFRGRTEI 253
            Q  K NDG  S+DS+   E  A++GRVF+PS+  GMQWR G+ FQNQN+ GQ RGRTEI
Sbjct: 477 PQIGKANDGAASVDSSIVNEAAAVSGRVFSPSVVPGMQWRPGSPFQNQNDAGQLRGRTEI 536

Query: 254 APDQREKFLQRLQQVQQQGHSNLLGMP--LGGN-KQFSSQQNPLLQQ-FNSQGSSISAQA 309
           APDQREKFLQ+ QQVQQQG S LL MP  +GGN KQFSSQQ   L Q FNSQGSS+S+Q+
Sbjct: 537 APDQREKFLQKFQQVQQQGPSTLLNMPSLVGGNHKQFSSQQQSPLLQQFNSQGSSVSSQS 596

Query: 310 GLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPQQPQNLP 369
            +GLG Q+P +  ++S SLQQ  N +H  S Q    +G  KDAD    K EE QQ QN P
Sbjct: 597 SMGLGAQSPSLGGISSVSLQQL-NSVHSPSGQHPF-AGVAKDAD----KFEEHQQHQNFP 650

Query: 370 EESTPESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPGQPLQSS 429
           +EST ES SS G+GKNL  EDDLK+ YA+DS  G+SASL E AQ  RD DLSPGQPLQS+
Sbjct: 651 DESTTESTSSTGIGKNLTVEDDLKSAYALDSPAGLSASLPEAAQTFRDIDLSPGQPLQSN 710

Query: 430 QPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERA 489
           Q +G LGVIGRR+  +LGAIGDS   ++V+SGG+ DQ+YN+QMLE+A +++PQP+DSER 
Sbjct: 711 QSTGNLGVIGRRNGVELGAIGDSFGASSVNSGGVRDQLYNLQMLEAAHFRMPQPRDSERP 770

Query: 490 RSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAK 549
           R+Y PRHPA+TP SYPQVQAPIV+NPAFWERL L+ +GTDTLFFAFYYQQNTYQQYLAAK
Sbjct: 771 RTYTPRHPAITPSSYPQVQAPIVNNPAFWERLGLEPFGTDTLFFAFYYQQNTYQQYLAAK 830

Query: 550 ELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFT 609
           ELKKQSWRYHRKYNTWFQRHEEPKVA D++EQGTYVYFDFHIANDDLQHGWCQRIK +FT
Sbjct: 831 ELKKQSWRYHRKYNTWFQRHEEPKVATDDYEQGTYVYFDFHIANDDLQHGWCQRIKNDFT 890

Query: 610 FEYNYLEDELI 620
           FEYNYLEDEL+
Sbjct: 891 FEYNYLEDELV 901

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	621
TAIR|locus:2172389	845	AT5G18230 [Arabidopsis thalian	0.441	0.324	0.539	1.1e-95
DICTYBASE|DDB_G0272056	866	DDB_G0272056 "putative CCR4-NO	0.231	0.166	0.528	8.2e-48
RGD|1304771	751	Cnot3 "CCR4-NOT transcription	0.225	0.186	0.542	2.8e-47
UNIPROTKB|E1BCS1	744	CNOT3 "Uncharacterized protein	0.225	0.188	0.542	3.1e-47
UNIPROTKB|F6XXD6	753	CNOT3 "Uncharacterized protein	0.225	0.185	0.542	7.5e-47
UNIPROTKB|O75175	753	CNOT3 "CCR4-NOT transcription	0.225	0.185	0.542	9.5e-47
FB|FBgn0033029	844	l(2)NC136 "lethal (2) NC136" [	0.223	0.164	0.549	1.6e-46
MGI|MGI:2385261	751	Cnot3 "CCR4-NOT transcription	0.225	0.186	0.542	1.9e-46
UNIPROTKB|E2R344	710	CNOT3 "Uncharacterized protein	0.223	0.195	0.535	2.3e-45
ZFIN|ZDB-GENE-040927-6	901	cnot3a "CCR4-NOT transcription	0.225	0.155	0.522	1.3e-38

TAIR|locus:2172389 AT5G18230 [Arabidopsis thaliana (taxid:3702)]

 Score = 775 (277.9 bits), Expect = 1.1e-95, Sum P(2) = 1.1e-95
 Identities = 156/289 (53%), Positives = 189/289 (65%)

Query:   335 IHQQSSQQTLMSGGQKD-ADVSHLKVXXXXXXXXXXXXXXXXXXXXXGLGKNLIHEDDLK 393
             + QQS+  +   G Q   ADV H++                         K +  EDD K
Sbjct:   570 LQQQSNAMSQQLGQQPSVADVDHVR------NDDQSQQNLPDDSASIAASKAIQSEDDSK 623

Query:   394 APYAIDSSTGVSASLTEPAQVVRDTDXXXXXXXXXXXXXXXXXVIGRRSVSDLGAIGDSL 453
               +  D+ +G+ + + +P QV    D                 VIGRRS S+LGAIGD  
Sbjct:   624 VLF--DTPSGMPSYMLDPVQVSSGPDFSPGQPIQPGQSSSSLGVIGRRSNSELGAIGDP- 680

Query:   454 SGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVS 513
               + V  G MHDQM+N+QMLE+AFYK PQP DSER R Y PR+PA+TP ++PQ QAPI++
Sbjct:   681 --SAV--GPMHDQMHNLQMLEAAFYKRPQPSDSERPRPYSPRNPAITPQTFPQTQAPIIN 736

Query:   514 NPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPK 573
             NP  WERL  D+YGTDTLFFAFYYQQN+YQQYLAAKELKKQSWRYHRK+NTWFQRH+EPK
Sbjct:   737 NPLLWERLGSDAYGTDTLFFAFYYQQNSYQQYLAAKELKKQSWRYHRKFNTWFQRHKEPK 796

Query:   574 VANDEFEQGTYVYFDFHIANDDLQHG-WCQRIKTEFTFEYNYLEDELIV 621
             +A DE+EQG YVYFDF    D+ Q G WCQRIK EFTFEY+YLEDEL+V
Sbjct:   797 IATDEYEQGAYVYFDFQTPKDENQEGGWCQRIKNEFTFEYSYLEDELVV 845

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

DICTYBASE|DDB_G0272056 DDB_G0272056 "putative CCR4-NOT complex subunit 3" [Dictyostelium discoideum (taxid:44689)]

 Score = 431 (156.8 bits), Expect = 8.2e-48, Sum P(3) = 8.2e-48
 Identities = 83/157 (52%), Positives = 104/157 (66%)

Query:   462 GMHDQMY-NMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWER 520
             G  + M     M++ +F  LP  KD ER  ++IPR+P   P  YPQ   P+  +P  +E+
Sbjct:   722 GFEEAMILTRHMMDISFKNLPDFKDYERIPTFIPRNPKPVPQYYPQSTLPLFESPNVFEK 781

Query:   521 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFE 580
               +D     TLFF FY++Q TYQQY AAKELKKQ WRYH+KY TWF+RHEEPK   +EFE
Sbjct:   782 FDID-----TLFFIFYFKQGTYQQYQAAKELKKQGWRYHKKYLTWFRRHEEPKEITNEFE 836

Query:   581 QGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 617
             QGTYVYFD+       + GWCQR KTEFTFEY +LE+
Sbjct:   837 QGTYVYFDY-------ETGWCQRKKTEFTFEYRFLEE 866

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

RGD|1304771 Cnot3 "CCR4-NOT transcription complex, subunit 3" [Rattus norvegicus (taxid:10116)]

 Score = 426 (155.0 bits), Expect = 2.8e-47, Sum P(3) = 2.8e-47
 Identities = 83/153 (54%), Positives = 100/153 (65%)

Query:   465 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 524
             +Q+Y   M E+A++ +P P DSER R Y+PR+P  TPP + Q+  P      F++RLS  
Sbjct:   608 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 665

Query:   525 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 584
                T+TLFF FYY + T  QYLAAK LKKQSWR+H KY  WFQRHEEPK   DEFEQGTY
Sbjct:   666 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 722

Query:   585 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 617
             +YFD+          W QR K  FTFEY YLED
Sbjct:   723 IYFDYE--------KWGQRKKEGFTFEYRYLED 747

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|E1BCS1 CNOT3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 426 (155.0 bits), Expect = 3.1e-47, Sum P(3) = 3.1e-47
 Identities = 83/153 (54%), Positives = 100/153 (65%)

Query:   465 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 524
             +Q+Y   M E+A++ +P P DSER R Y+PR+P  TPP + Q+  P      F++RLS  
Sbjct:   601 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 658

Query:   525 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 584
                T+TLFF FYY + T  QYLAAK LKKQSWR+H KY  WFQRHEEPK   DEFEQGTY
Sbjct:   659 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 715

Query:   585 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 617
             +YFD+          W QR K  FTFEY YLED
Sbjct:   716 IYFDYE--------KWGQRKKEGFTFEYRYLED 740

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F6XXD6 CNOT3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 426 (155.0 bits), Expect = 7.5e-47, Sum P(3) = 7.5e-47
 Identities = 83/153 (54%), Positives = 100/153 (65%)

Query:   465 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 524
             +Q+Y   M E+A++ +P P DSER R Y+PR+P  TPP + Q+  P      F++RLS  
Sbjct:   610 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 667

Query:   525 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 584
                T+TLFF FYY + T  QYLAAK LKKQSWR+H KY  WFQRHEEPK   DEFEQGTY
Sbjct:   668 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 724

Query:   585 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 617
             +YFD+          W QR K  FTFEY YLED
Sbjct:   725 IYFDYE--------KWGQRKKEGFTFEYRYLED 749

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|O75175 CNOT3 "CCR4-NOT transcription complex subunit 3" [Homo sapiens (taxid:9606)]

 Score = 426 (155.0 bits), Expect = 9.5e-47, Sum P(3) = 9.5e-47
 Identities = 83/153 (54%), Positives = 100/153 (65%)

Query:   465 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 524
             +Q+Y   M E+A++ +P P DSER R Y+PR+P  TPP + Q+  P      F++RLS  
Sbjct:   610 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 667

Query:   525 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 584
                T+TLFF FYY + T  QYLAAK LKKQSWR+H KY  WFQRHEEPK   DEFEQGTY
Sbjct:   668 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 724

Query:   585 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 617
             +YFD+          W QR K  FTFEY YLED
Sbjct:   725 IYFDYE--------KWGQRKKEGFTFEYRYLED 749

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0000932 "cytoplasmic mRNA processing body" evidence=ISS

GO:2000036 "regulation of stem cell maintenance" evidence=IMP

GO:0030014 "CCR4-NOT complex" evidence=IDA

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=TAS

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

FB|FBgn0033029 l(2)NC136 "lethal (2) NC136" [Drosophila melanogaster (taxid:7227)]

 Score = 440 (159.9 bits), Expect = 1.6e-46, Sum P(3) = 1.6e-46
 Identities = 84/153 (54%), Positives = 104/153 (67%)

Query:   466 QMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDS 525
             QM   QM+E+A+Y LPQP D+E+ ++Y  R P +TP  YPQ Q PI     F++RLS   
Sbjct:   703 QM-QFQMMEAAYYHLPQPMDTEKLQTYFHRAPVLTPSHYPQAQMPIYDTVEFYQRLS--- 758

Query:   526 YGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYV 585
               T+TLFF FYY + +  QYLAAK LKKQSWR+H KY  WFQRHEEPK+ ND++EQGTY+
Sbjct:   759 --TETLFFVFYYMEGSKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKIINDDYEQGTYI 816

Query:   586 YFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDE 618
             YFD+          W QR K  FTFEY YLED+
Sbjct:   817 YFDYE--------KWSQRKKEGFTFEYKYLEDK 841

GO:0006351 "transcription, DNA-dependent" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0030014 "CCR4-NOT complex" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:2385261 Cnot3 "CCR4-NOT transcription complex, subunit 3" [Mus musculus (taxid:10090)]

 Score = 426 (155.0 bits), Expect = 1.9e-46, Sum P(3) = 1.9e-46
 Identities = 83/153 (54%), Positives = 100/153 (65%)

Query:   465 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 524
             +Q+Y   M E+A++ +P P DSER R Y+PR+P  TPP + Q+  P      F++RLS  
Sbjct:   608 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 665

Query:   525 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 584
                T+TLFF FYY + T  QYLAAK LKKQSWR+H KY  WFQRHEEPK   DEFEQGTY
Sbjct:   666 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 722

Query:   585 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 617
             +YFD+          W QR K  FTFEY YLED
Sbjct:   723 IYFDYE--------KWGQRKKEGFTFEYRYLED 747

GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0030014 "CCR4-NOT complex" evidence=ISO

GO:2000036 "regulation of stem cell maintenance" evidence=ISO

UNIPROTKB|E2R344 CNOT3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 412 (150.1 bits), Expect = 2.3e-45, Sum P(3) = 2.3e-45
 Identities = 82/153 (53%), Positives = 100/153 (65%)

Query:   465 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 524
             +Q+Y   M E+A++ +P P DSER R++ PR+P  TPP + Q+  P      F++RLS  
Sbjct:   568 EQLYQQAMEEAAWHHMPHPSDSERIRTF-PRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 624

Query:   525 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 584
                T+TLFF FYY + T  QYLAAK LKKQSWR+H KY  WFQRHEEPK   DEFEQGTY
Sbjct:   625 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 681

Query:   585 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 617
             +YFD+          W QR K  FTFEY YLED
Sbjct:   682 IYFDYE--------KWGQRKKEGFTFEYRYLED 706

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-040927-6 cnot3a "CCR4-NOT transcription complex, subunit 3a" [Danio rerio (taxid:7955)]

 Score = 402 (146.6 bits), Expect = 1.3e-38, Sum P(3) = 1.3e-38
 Identities = 80/153 (52%), Positives = 98/153 (64%)

Query:   465 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 524
             +Q+Y   M E+A+  +P P DSER R Y+ R+P  TPP + Q+      +  F++RLS  
Sbjct:   758 EQLYQQAMQEAAWTHMPHPSDSERIRQYLMRNPCPTPPFHHQMPPHHSDSIEFYQRLS-- 815

Query:   525 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 584
                T+TLFF FYY + T  QYL+AK LKKQSWR+H KY  WFQRHEEPK   DEFEQGTY
Sbjct:   816 ---TETLFFIFYYLEGTKAQYLSAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 872

Query:   585 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 617
             +YFD+          W QR K  FTFEY YLED
Sbjct:   873 IYFDYE--------KWGQRKKEGFTFEYRYLED 897

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	621
pfam04153	131	pfam04153, NOT2_3_5, NOT2 / NOT3 / NOT5 family	2e-58
COG5665	548	COG5665, NOT5, CCR4-NOT transcriptional regulation	1e-33
COG5601	172	COG5601, CDC36, General negative regulator of tran	3e-16

>gnl|CDD|217931 pfam04153, NOT2_3_5, NOT2 / NOT3 / NOT5 family

 Score =  191 bits (488), Expect = 2e-58
 Identities = 66/146 (45%), Positives = 84/146 (57%), Gaps = 17/146 (11%)

Query: 473 LESAFYKLPQPKDS-ERARSY-IPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDT 530
           L  +F   P P D+ ER   Y IP     TP SYPQ   P   +P+ +++        +T
Sbjct: 1   LHPSFASPPSPSDARERPPQYDIPECYLNTPSSYPQNPPP--LSPSKFQKFD-----DET 53

Query: 531 LFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFH 590
           LF+ FYY     QQYLAAKELK + WRYH+KY TWF RHEEPKV  DE+E+G+Y+YFD  
Sbjct: 54  LFYIFYYMPGDLQQYLAAKELKNRGWRYHKKYQTWFTRHEEPKVITDEYERGSYIYFDPE 113

Query: 591 IANDDLQHGWCQRIKTEFTFEYNYLE 616
                    W +R K  FT +Y+ LE
Sbjct: 114 S--------WKKRRKENFTLDYSDLE 131

NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that negatively regulates the basal and activated transcription of many genes. This family includes NOT2, NOT3 and NOT5. Length = 131

>gnl|CDD|227952 COG5665, NOT5, CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]

 Score =  135 bits (340), Expect = 1e-33
 Identities = 56/135 (41%), Positives = 76/135 (56%), Gaps = 12/135 (8%)

Query: 483 PKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTY 542
           P +++  + Y P  P+  P   P       S+   + +  LD     TLFF FY+ Q TY
Sbjct: 423 PNENDTDKKYKPGKPSKAPSKKPDDPLSRFSSARIFMKFDLD-----TLFFIFYHYQGTY 477

Query: 543 QQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQ 602
           QQYLAA+ELKK+SWR+H+KY TWFQR  EPK    + E+G++ YFD+  +       W  
Sbjct: 478 QQYLAARELKKRSWRFHKKYRTWFQREIEPKPITGKSEEGSWRYFDYKKS-------WLA 530

Query: 603 RIKTEFTFEYNYLED 617
           R K +F F Y YLE 
Sbjct: 531 RKKNDFVFNYEYLEK 545

Length = 548

>gnl|CDD|227888 COG5601, CDC36, General negative regulator of transcription subunit [Transcription]

 Score = 76.6 bits (188), Expect = 3e-16
 Identities = 44/172 (25%), Positives = 70/172 (40%), Gaps = 35/172 (20%)

Query: 466 QMYNMQM---LESAFYKLPQPKDSE-RARSYI----------PRHPA-VTPPSYPQVQAP 510
           +     +   L S    L +PK  + R  + +          P  P  + P  YP    P
Sbjct: 15  EQSIHDLGKDLLSEILSLVRPKKYQDRPSTTLYSPWAESTKKPVQPMFMLPNCYPNAPNP 74

Query: 511 IVSNPAF---WERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTW-- 565
               P F    E + +D++  +TLF+ FY   N   Q  A  EL K++WR+H+    W  
Sbjct: 75  ----PIFKVNIEDMKMDNFHDETLFYIFYSFPNDVLQEKAYDELLKRNWRFHKMLKCWLT 130

Query: 566 FQRHEEPKVANDEFEQGTYVYFD-FHIANDDLQHGWCQRIKTEFTFEYNYLE 616
           F     P  A+   E+G+YV+FD F          W  ++  +F  +Y  + 
Sbjct: 131 FNPGMSPATADHVKERGSYVFFDPFS---------W-SKVSLDFLLDYKAVR 172

Length = 172

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	621
KOG2150	575	consensus CCR4-NOT transcriptional regulation comp	100.0
PF04153	134	NOT2_3_5: NOT2 / NOT3 / NOT5 family; InterPro: IPR	100.0
COG5665	548	NOT5 CCR4-NOT transcriptional regulation complex,	100.0
COG5601	172	CDC36 General negative regulator of transcription	99.97
KOG2151	312	consensus Predicted transcriptional regulator [Tra	99.52
KOG2151	312	consensus Predicted transcriptional regulator [Tra	99.07

>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]

Probab=100.00  E-value=2.2e-40  Score=356.14  Aligned_cols=271  Identities=38%  Similarity=0.595  Sum_probs=192.6

Q ss_pred             cccccceeccCCCccccccccccCCCCcCcCcccceeeccCC--------------CCcccCcccccCCCCCCCCCCCCC
Q 007007          308 QAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQ--------------KDADVSHLKVEEPQQPQNLPEEST  373 (621)
Q Consensus       308 q~~~g~g~q~~~~~~~~s~~~~~~p~~~~~~~~q~~~~~~~~--------------k~~~~~~~~~~~~~~~~~~~~d~~  373 (621)
                      |++.++|+++++++.+++|++...-|++|+.-.|...++...              +.+-+++...-..|-+.+.|+++.
T Consensus       290 ~~~~~~~~~~~s~~A~aaA~~~~~~~s~~~~~qq~~~~~s~~~P~~~~p~~~~~~~~~st~~~p~~p~~q~~~~~P~~s~  369 (575)
T KOG2150|consen  290 HNGPPIGIDASSSAAPSGAVLAKGSNGQHQSPQQLRIPLSMPPPHSPTPSLKRIQHKVSTLDGPRTPPEQSEENTPLSSA  369 (575)
T ss_pred             cCCCccccCCCccccchhhhcccccccCCCccccccccCCCCCCCCCCccccchhhccccccCCCCCcccccccChhhhc
Confidence            899999999999999999999999999998877777552100              111111111001111122333222


Q ss_pred             CcccCCCCCCCCccccccCCCcccccCCCCCcccccCcccccCCCCCCCCCCCCCCCCCCCcccccccCCCCccccccCc
Q 007007          374 PESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSL  453 (621)
Q Consensus       374 ~es~~~~g~~~~~~~~d~~~~~~~~d~p~~~~~s~~e~~Q~~Rd~~l~~~Q~~qs~~~~GLLGvI~RmsdpDL~AlG~DL  453 (621)
                      --.+..     ..            -.|.|++-...+..++.-..+..+..+..++..+--.+...+|...-||+.    
T Consensus       370 k~~~~~-----s~------------~~~~~vp~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~----  428 (575)
T KOG2150|consen  370 KLQASK-----SE------------SPPKGVPELEEEAAASTLSPDSSEPASANTPLSSKEQHSPFELGLSPLGVQ----  428 (575)
T ss_pred             hhccCc-----cc------------CCCCCCCccccccccCCCCCCccccccccCCCCccccccchhhcccccccc----
Confidence            211110     00            012222222222222221222222222222221111112112222222221    


Q ss_pred             cccccccCCcCccchhhhhHHHHhhcCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCChhHHhhhccCCCCCceeEE
Q 007007          454 SGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFF  533 (621)
Q Consensus       454 T~~~~tlG~~~d~lLnLnslEasy~tfPsPwDsEppR~Y~PrnP~~tP~cYPq~PpP~ldnp~~fqKiKm~kfs~ETLFY  533 (621)
                            .+++++++..+.++|.++..++.|.|+|+++.|.|++|+.+|.+|++++++.+++..+|+|     |+.|||||
T Consensus       429 ------~~~~~e~i~~~~~~e~a~~~~~~psdsE~pq~y~pk~p~~tp~~~~q~~~~~~ds~~~~~r-----l~~dTLFf  497 (575)
T KOG2150|consen  429 ------SEITNEQIRFLYALEAACKLVPIPSDSEKPQGYLPKTPLPTPSYFPQTPPSLTDSTEITER-----LDPDTLFF  497 (575)
T ss_pred             ------ccccccccchHHHHHhhhccCCCCchhhcccCCCCCCCCCCCccCCCCCCcccchhhHHhh-----ccccceee
Confidence                  3456899999999999999999999999999999999999999999999999999999999     99999999


Q ss_pred             EeecCCCcHHHHHHHHHHhhccceeecccceeeecccCCccCCCccceeeEEEeccccCcccccccccceeccCeeeech
Q 007007          534 AFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYN  613 (621)
Q Consensus       534 IFYy~PgD~~QllAAkEL~kRgWRYHKe~k~WF~R~~ePkv~Td~yErGsY~YFD~~~~~~~~~~~W~qR~K~nFtfeY~  613 (621)
                      ||||++|+++||+||+||++|+||||++|.+||+|+.|||.+|+.||+|+|+|||++        .||+|+|.+|+|+|.
T Consensus       498 iFY~~qgt~eQylAaKeLkk~sWrfhkky~tWFqR~~EpK~itd~~E~G~y~yFD~~--------~W~qrkK~dFtfeY~  569 (575)
T KOG2150|consen  498 IFYYQQGTYEQYLAAKELKKRSWRFHKKYTTWFQRHEEPKNITDIYEQGDYRYFDYK--------DWSQRKKIDFTFEYQ  569 (575)
T ss_pred             EEeeecchHHHHHHHHHHhhcceeEeecceeEeeeccCccchhhhhhcCceEEEehh--------Hhhhhhccceeeehh
Confidence            999999999999999999999999999999999999999999999999999999995        899999999999999


Q ss_pred             hhhhh
Q 007007          614 YLEDE  618 (621)
Q Consensus       614 ~LE~r  618 (621)
                      |||+.
T Consensus       570 yLE~~  574 (575)
T KOG2150|consen  570 YLEDS  574 (575)
T ss_pred             hccCC
Confidence            99985

>PF04153 NOT2_3_5: NOT2 / NOT3 / NOT5 family; InterPro: IPR007282 NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that negatively regulates the basal and activated transcription of many genes

Probab=100.00  E-value=2.6e-39  Score=295.08  Aligned_cols=128  Identities=45%  Similarity=0.910  Sum_probs=115.3

Q ss_pred             HhhcCCCCCCCCcC----CCCC-CCCCCCCCCCCCCCCCCC-CCChhHHhhhccCCCCCceeEEEeecCCCcHHHHHHHH
Q 007007          476 AFYKLPQPKDSERA----RSYI-PRHPAVTPPSYPQVQAPI-VSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAK  549 (621)
Q Consensus       476 sy~tfPsPwDsEpp----R~Y~-PrnP~~tP~cYPq~PpP~-ldnp~~fqKiKm~kfs~ETLFYIFYy~PgD~~QllAAk  549 (621)
                      ||.+|.+||++.++    +.|. |+++..+|.|||+.+++. ++++.+++|     |++||||||||+||||++|++||+
T Consensus         1 L~~sf~sp~~~~~~~~~~~~y~~P~~~~~~~~~~p~~p~~~~~~~~~~~~k-----~~~eTLFyiFY~~p~~~~Q~~AA~   75 (134)
T PF04153_consen    1 LYSSFASPPSDSDSRQQEPQYQIPSCYLPTPSSYPQRPPPIILDSPEKFQK-----FSEETLFYIFYYMPGDYQQLLAAK   75 (134)
T ss_pred             CccccCCCCCCCCCCCCCCCCCCCCCcCcCccccCCCcCcccccchHHHhh-----cCCceEEEEEeecCCcHHHHHHHH
Confidence            46778888876543    5564 887777899999988877 677777777     999999999999999999999999


Q ss_pred             HHhhccceeecccceeeecccCCccCCCccceeeEEEeccccCcccccccccceeccCeeeechhhh
Q 007007          550 ELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLE  616 (621)
Q Consensus       550 EL~kRgWRYHKe~k~WF~R~~ePkv~Td~yErGsY~YFD~~~~~~~~~~~W~qR~K~nFtfeY~~LE  616 (621)
                      ||++|||||||++++||+|+++++++++.+|+|+|+|||++        +|++++|+||+|+|++||
T Consensus        76 eL~~R~Wryhk~~~~W~~r~~~~~~~~~~~e~g~y~~FD~~--------~W~~~~k~~f~~~y~~LE  134 (134)
T PF04153_consen   76 ELYKRGWRYHKEYKTWFQRDSEPKPITEQYERGSYVYFDPE--------SWEKRRKKNFTFDYSDLE  134 (134)
T ss_pred             HHHHCCcEEecCcCEEeeECCCCCccccceeeeeEEEechH--------HhcCcchhccEEeHHHcC
Confidence            99999999999999999999999999999999999999996        799999999999999998

This family includes NOT2, NOT3 and NOT5.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]

Probab=100.00  E-value=3.5e-35  Score=305.16  Aligned_cols=126  Identities=44%  Similarity=0.879  Sum_probs=118.3

Q ss_pred             cCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCChhHHhhhccCCCCCceeEEEeecCCCcHHHHHHHHHHhhcccee
Q 007007          479 KLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRY  558 (621)
Q Consensus       479 tfPsPwDsEppR~Y~PrnP~~tP~cYPq~PpP~ldnp~~fqKiKm~kfs~ETLFYIFYy~PgD~~QllAAkEL~kRgWRY  558 (621)
                      ..|.--|.+  +.|+|+.|+.+|.+||+.|++.|++..+|.+     |+.||||||||+.+|+|+||+||+||++|+|||
T Consensus       421 ~~Pn~~D~~--KkY~P~~P~~~Ps~~P~~PL~~F~S~~if~k-----~D~DTLFfiFY~~~GTyQQY~Aa~eLKk~SWRF  493 (548)
T COG5665         421 LTPNENDTD--KKYKPGKPSKAPSKKPDDPLSRFSSARIFMK-----FDLDTLFFIFYHYQGTYQQYLAARELKKRSWRF  493 (548)
T ss_pred             ecCCcchhh--hccCCCCCCCCCCCCCCCccccccHHHHHHh-----cCccceEEEeeeccchHHHHHHHHHHHhhhhhh
Confidence            445555555  4899999999999999999999999999998     999999999999999999999999999999999


Q ss_pred             ecccceeeecccCCccCCCccceeeEEEeccccCcccccccccceeccCeeeechhhhhh
Q 007007          559 HRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDE  618 (621)
Q Consensus       559 HKe~k~WF~R~~ePkv~Td~yErGsY~YFD~~~~~~~~~~~W~qR~K~nFtfeY~~LE~r  618 (621)
                      ||+|.+||+|+.||+.+|++||+|+|.||||+       ..|..|.|.+|+|+|.|||+.
T Consensus       494 HkKY~TWFQR~~EPK~IT~~~E~Gs~ryFDy~-------~~W~~rKK~DF~F~Y~YLE~~  546 (548)
T COG5665         494 HKKYRTWFQREIEPKPITGKSEEGSWRYFDYK-------KSWLARKKNDFVFNYEYLEKL  546 (548)
T ss_pred             hcchhhhhhhhcccccccCccccCceeEeecc-------chHHHhhcccceeehhhhhhc
Confidence            99999999999999999999999999999998       689999999999999999974

>COG5601 CDC36 General negative regulator of transcription subunit [Transcription]

Probab=99.97  E-value=2e-33  Score=262.10  Aligned_cols=163  Identities=23%  Similarity=0.454  Sum_probs=132.5

Q ss_pred             cccccccCCCCcc--ccccCccccccccCCcCccchhhhhHHHHhhcCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCC
Q 007007          435 LGVIGRRSVSDLG--AIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIV  512 (621)
Q Consensus       435 LGvI~RmsdpDL~--AlG~DLT~~~~tlG~~~d~lLnLnslEasy~tfPsPwDsEppR~Y~PrnP~~tP~cYPq~PpP~l  512 (621)
                      +-++ |+.|.+++  .||.||...-.++|      -.-...+....+|-+||+...-++..|+  +.+|.||+..|.|..
T Consensus         6 ~pl~-~ied~e~s~~~lg~Dl~s~~~sl~------~p~~~qDr~~~t~~sPwae~tkk~vqp~--f~lP~cy~n~p~pp~   76 (172)
T COG5601           6 KPLE-QIEDEEQSIHDLGKDLLSEILSLV------RPKKYQDRPSTTLYSPWAESTKKPVQPM--FMLPNCYPNAPNPPI   76 (172)
T ss_pred             hhHH-HHHHhhhhHHHhchhHHHHHHhhc------CcccccccccccccChhhhhccCcccch--hcCccccCCCCCCCc
Confidence            3455 88888887  79999992233333      1113345566778999998854444432  679999999987654


Q ss_pred             CChhHHhhhccCCCCCceeEEEeecCCCcHHHHHHHHHHhhccceeecccceeeeccc--CCccCCCccceeeEEEeccc
Q 007007          513 SNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDEFEQGTYVYFDFH  590 (621)
Q Consensus       513 dnp~~fqKiKm~kfs~ETLFYIFYy~PgD~~QllAAkEL~kRgWRYHKe~k~WF~R~~--ePkv~Td~yErGsY~YFD~~  590 (621)
                      -+.. .+.+||++|++||||||||.+|+|.+|..|+.||.+|+|||||.+|+|++.+.  +|.+.++..|||+|++||+.
T Consensus        77 f~~~-~~~~k~~~f~dETLFyiFY~~P~dvlQe~ay~el~krnwrfhK~lk~wlT~~p~m~P~~~~~~~ergsyvfFDP~  155 (172)
T COG5601          77 FKVN-IEDMKMDNFHDETLFYIFYSFPNDVLQEKAYDELLKRNWRFHKMLKCWLTFNPGMSPATADHVKERGSYVFFDPF  155 (172)
T ss_pred             eecc-hHHHHHHhhccceeEEEEeeCCcHHHHHHHHHHHHHhchhhhhhheeeeccCCCCCccccccccccceEEEEcch
Confidence            4444 45689999999999999999999999999999999999999999999999984  78889999999999999996


Q ss_pred             cCcccccccccceeccCeeeechhhh
Q 007007          591 IANDDLQHGWCQRIKTEFTFEYNYLE  616 (621)
Q Consensus       591 ~~~~~~~~~W~qR~K~nFtfeY~~LE  616 (621)
                              .|+ |++.||.|+|+.++
T Consensus       156 --------~W~-k~~~dfll~y~av~  172 (172)
T COG5601         156 --------SWS-KVSLDFLLDYKAVR  172 (172)
T ss_pred             --------hHH-HHhHHHHHHHHhhC
Confidence                    896 89999999999875

>KOG2151 consensus Predicted transcriptional regulator [Transcription; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=99.52  E-value=3.9e-15  Score=153.28  Aligned_cols=126  Identities=21%  Similarity=0.260  Sum_probs=95.6

Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCccccc--ccCCCCc--c-ccccCccccccccCCcCccchhhhhHHHHhhcCCCCCC
Q 007007          411 PAQVVRDTDLSPGQPLQSSQPSGGLGVIG--RRSVSDL--G-AIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKD  485 (621)
Q Consensus       411 ~~Q~~Rd~~l~~~Q~~qs~~~~GLLGvI~--RmsdpDL--~-AlG~DLT~~~~tlG~~~d~lLnLnslEasy~tfPsPwD  485 (621)
                      .+|...|..+......+....+|+.|++.  |..+.|-  . .+|+||+    ++|      |+|+..|.++.+|-.||.
T Consensus       182 g~q~~Pdg~v~niP~~m~t~~fgm~gLL~~ir~~~~~g~~~l~lg~Dl~----~ll------lsla~~~di~~~F~~P~~  251 (312)
T KOG2151|consen  182 GSQPTPDGYVPNIPSGMETGQFGMKGLLTLIRGAQGEGQTTLPLGADLN----SLL------LSLAVPEDIIPTFQGPWG  251 (312)
T ss_pred             ccccCCCCcccCCCcchhhhhhhhhcchhhheecccCcceeeccCCChh----hhh------ccccccccccccccCCcc
Confidence            33444555554334444444565555554  6766652  2 8999999    999      999999999999999999


Q ss_pred             CCcCCCCCCCCCCCCCCCCCCCCCCCCCChhHHhhhccCCCCCceeEEEeecCCCcHHHHHHHHHHhhccc
Q 007007          486 SERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSW  556 (621)
Q Consensus       486 sEppR~Y~PrnP~~tP~cYPq~PpP~ldnp~~fqKiKm~kfs~ETLFYIFYy~PgD~~QllAAkEL~kRgW  556 (621)
                      +++++. .  ..+.+|.||+.++++.. .      .|+.+|++|||||+||.+++|.+|..||.||.+|+|
T Consensus       252 ~~P~~~-~--~~~~lp~~y~~v~~~~~-~------~~~~~~~dE~lff~fyt~~~d~~Q~~aa~el~~r~w  312 (312)
T KOG2151|consen  252 EVPTSQ-E--ASFNLPNCYLNVNPKLQ-F------SKIDQFQDETLFYIFYTFPGDVMQELAAAELLKRNW  312 (312)
T ss_pred             cCCccc-c--hhhhcchhhhccCCccc-h------HHHhhhcccceeeeeccCCcchhhhhHHHHhhccCC
Confidence            999883 2  24789999998544322 1      136679999999999999999999999999999999

>KOG2151 consensus Predicted transcriptional regulator [Transcription; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=99.07  E-value=5.9e-11  Score=122.80  Aligned_cols=133  Identities=28%  Similarity=0.563  Sum_probs=105.8

Q ss_pred             ccccCccccccccCCcCccchhhhhH-HHHhhcCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCChhHHhh---hcc
Q 007007          448 AIGDSLSGATVSSGGMHDQMYNMQML-ESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWER---LSL  523 (621)
Q Consensus       448 AlG~DLT~~~~tlG~~~d~lLnLnsl-Easy~tfPsPwDsEppR~Y~PrnP~~tP~cYPq~PpP~ldnp~~fqK---iKm  523 (621)
                      ++|.||+    ++|      +++|.- -.+|.+|..||++++.+.-   .....|.||...+       .++.+   ..+
T Consensus        37 ~~~~d~~----~lg------~~~n~~~~~~~~~f~g~~~s~~l~~l---~~~~~P~~~~~~~-------~~~~~~~~~~~   96 (312)
T KOG2151|consen   37 ALGYDLT----TLG------LNLNLSERKLLMNFAGPWASEPLRHL---LDTKVPEEYMTHR-------HLRSKLPSLRL   96 (312)
T ss_pred             eeccchh----ccC------cccccccccccccccCcCCCcccccc---ccccCccccccch-------hhhhcCCcccc
Confidence            8999999    899      555533 3778889999999998842   2356899998322       22222   136


Q ss_pred             CCCCCceeEEEeecCCCcHHHHHHHHHHhhccceeecccceeeeccc--CCccCCCccceeeEEEeccccCccccccccc
Q 007007          524 DSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDEFEQGTYVYFDFHIANDDLQHGWC  601 (621)
Q Consensus       524 ~kfs~ETLFYIFYy~PgD~~QllAAkEL~kRgWRYHKe~k~WF~R~~--ePkv~Td~yErGsY~YFD~~~~~~~~~~~W~  601 (621)
                      +++...-|||+||++|        |.||..|.||||++.+.|+.+..  .++..++.|+.|.|..||..        .|+
T Consensus        97 ~kv~~~~l~~~~~~~P--------a~e~~~r~~~~~~~~~~~l~~s~yg~~~~~~~~~~~g~~~~~~q~--------s~~  160 (312)
T KOG2151|consen   97 NKVGERVLFYLFYNLP--------AGELQAREWRFHKSEQVWLTRSQYGGVKELPGNYMKGHFNVFDQM--------SWR  160 (312)
T ss_pred             cccccccceeeeccCC--------CcccccccccccccccccccccccCCccccccchhhchhccccch--------hhh
Confidence            6799999999999999        99999999999999999999974  56677789999999999986        786


Q ss_pred             ceeccCeeeechhhhh
Q 007007          602 QRIKTEFTFEYNYLED  617 (621)
Q Consensus       602 qR~K~nFtfeY~~LE~  617 (621)
                       .+-.+-.++|..+|+
T Consensus       161 -~~~ke~~l~~~~~~~  175 (312)
T KOG2151|consen  161 -KIPKELKLAYSDLED  175 (312)
T ss_pred             -hcccchhhccccccc
Confidence             566677788888776

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	621
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 5e-08
 Identities = 72/528 (13%), Positives = 144/528 (27%), Gaps = 125/528 (23%)

Query: 161 VSDVAKRNILGAEER---LGSSGMVQSLVSPLSNRMILSQAAKGNDGT----GSIDSNNA 213
           V D   ++IL  EE    + S   V         R+  +  +K  +        +   N 
Sbjct: 38  VQD-MPKSILSKEEIDHIIMSKDAVSGT-----LRLFWTLLSKQEEMVQKFVEEVLRINY 91

Query: 214 GETV-AMAGRVFTPSMGMQW--RTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQ 270
              +  +      PSM  +      +   N N+   F            K  Q L +++ 
Sbjct: 92  KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV--FAKYNVSRLQPYLKLRQALLELRP 149

Query: 271 QGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQ 330
             +  + G+ LG  K                 + ++    L   VQ             +
Sbjct: 150 AKNVLIDGV-LGSGK-----------------TWVALDVCLSYKVQ------------CK 179

Query: 331 QPNPIH-----QQSSQQTLMSGGQK-DADVSHLKVEEPQQPQNLPEESTPESA------- 377
               I        +S +T++   QK    +            N+       S        
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI--HSIQAELRRL 237

Query: 378 -SSPGLGKNLIHEDDLKAPYAIDS--------STGVSASLTEPAQVVRDTDLSPGQPLQS 428
             S      L+   +++   A ++         T     +T+       T +S      +
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 429 SQPSGGLGVIGR---RSVSDL---------GAIGDSLSGATVSSGGMHDQMYNMQMLE-- 474
             P     ++ +       DL           +  S+   ++  G      +     +  
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL--SIIAESIRDGLATWDNWKHVNCDKL 355

Query: 475 ----SAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDT 530
                +   + +P +  R   +     +V PPS      P +     W  +         
Sbjct: 356 TTIIESSLNVLEPAE-YRKM-F--DRLSVFPPS---AHIPTILLSLIWFDVIKSDVMVVV 408

Query: 531 LFFAFY------YQQNTYQ---QYLAAKELKKQSWRYHRK----YNTW--FQRHEEPKVA 575
                Y       +++T      YL  K   +  +  HR     YN    F   +     
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468

Query: 576 NDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFT---FEYNYLEDELI 620
            D++    Y +   H+ N +          T F     ++ +LE ++ 
Sbjct: 469 LDQY---FYSHIGHHLKNIEHPERM-----TLFRMVFLDFRFLEQKIR 508

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 3e-07
 Identities = 59/445 (13%), Positives = 121/445 (27%), Gaps = 108/445 (24%)

Query: 241 QNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQFSSQQNPLLQQFNS 300
           + E  Q    T +  +QR++ L    QV  + + + L       + +   +  LL+   +
Sbjct: 99  KTEQRQPSMMTRMYIEQRDR-LYNDNQVFAKYNVSRL-------QPYLKLRQALLELRPA 150

Query: 301 QGSSISAQAGLG---LGVQAPGMNSVTSASLQQQ-PNPIH-----QQSSQQTLMSGGQK- 350
           +   I    G G   + +         S  +Q +    I        +S +T++   QK 
Sbjct: 151 KNVLIDGVLGSGKTWVALDV-----CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205

Query: 351 DADVSHLKVEEPQQPQNLPEESTPESA--------SSPGLGKNLIHEDDLKAPYAIDS-- 400
              +            N+       S          S      L+   +++   A ++  
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRI--HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263

Query: 401 ------STGVSASLTEPAQVVRDTDLSPGQPLQSSQPSGGLGVIGR---RSVSDL----- 446
                  T     +T+       T +S      +  P     ++ +       DL     
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323

Query: 447 ----GAIGDSLSGATVSSGGMHDQMYNMQMLE------SAFYKLPQPKDSERARSYIPRH 496
                 +  S+   ++  G      +     +       +   + +P +  R   +    
Sbjct: 324 TTNPRRL--SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE-YRKM-F--DR 377

Query: 497 PAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFY------YQQNTYQ---QYLA 547
            +V PPS      P +     W  +              Y       +++T      YL 
Sbjct: 378 LSVFPPS---AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434

Query: 548 AKELKKQSWRYHRK----YNT-----------------WFQ---RHEEPKVANDEFEQGT 583
            K   +  +  HR     YN                  ++     H +     +      
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494

Query: 584 YVYFDFH-----IANDDLQHGWCQR 603
            V+ DF      I +D     W   
Sbjct: 495 MVFLDFRFLEQKIRHDST--AWNAS 517

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00