Citrus Sinensis ID: 007040
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 620 | 2.2.26 [Sep-21-2011] | |||||||
| O23702 | 636 | C-terminal binding protei | yes | no | 0.961 | 0.937 | 0.711 | 0.0 | |
| Q9YHU0 | 440 | C-terminal-binding protei | N/A | no | 0.495 | 0.697 | 0.309 | 7e-31 | |
| Q9W758 | 437 | C-terminal-binding protei | N/A | no | 0.493 | 0.700 | 0.300 | 8e-31 | |
| Q9Z2F5 | 430 | C-terminal-binding protei | yes | no | 0.503 | 0.725 | 0.307 | 1e-30 | |
| O88712 | 441 | C-terminal-binding protei | yes | no | 0.495 | 0.696 | 0.309 | 1e-30 | |
| O46036 | 476 | C-terminal-binding protei | yes | no | 0.414 | 0.539 | 0.318 | 2e-30 | |
| P56545 | 445 | C-terminal-binding protei | yes | no | 0.482 | 0.671 | 0.298 | 4e-30 | |
| Q9EQH5 | 445 | C-terminal-binding protei | no | no | 0.482 | 0.671 | 0.298 | 4e-30 | |
| Q0VCQ1 | 445 | C-terminal-binding protei | no | no | 0.482 | 0.671 | 0.301 | 4e-30 | |
| P56546 | 445 | C-terminal-binding protei | no | no | 0.482 | 0.671 | 0.298 | 4e-30 |
| >sp|O23702|CTBP_ARATH C-terminal binding protein AN OS=Arabidopsis thaliana GN=AN PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 856 bits (2211), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/621 (71%), Positives = 506/621 (81%), Gaps = 25/621 (4%)
Query: 1 MMKNRFPAAMPHRDNPTPL-PSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLADGKIEA 59
M K R A MPHRD P+P P VV LNCIEDC LEQDSLAGVA VE+VPL R+ADGKIE+
Sbjct: 1 MSKIRSSATMPHRDQPSPASPHVVTLNCIEDCALEQDSLAGVAGVEYVPLSRIADGKIES 60
Query: 60 AAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIA 119
A AVLLHSLAYLPRAAQRRLRP+QLILCLGS+DR VDS LAADLGLRL+HVDTSRAEEIA
Sbjct: 61 ATAVLLHSLAYLPRAAQRRLRPHQLILCLGSADRAVDSTLAADLGLRLVHVDTSRAEEIA 120
Query: 120 DTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALAT 179
DTVMAL+LGLLRRTHLL+RHALSASGWLGS+QPLCRGMRRCRG+VLGIVGRS SAR LA+
Sbjct: 121 DTVMALILGLLRRTHLLSRHALSASGWLGSLQPLCRGMRRCRGMVLGIVGRSVSARYLAS 180
Query: 180 RSLSFKMSVLYFDVPEGKGKVT----FPSAARRMDTLNDLLAASDVISLHCAVTDETIQI 235
RSL+FKMSVLYFDVPEG + FP AARRMDTLNDLLAASDVISLHCA+T++T+QI
Sbjct: 181 RSLAFKMSVLYFDVPEGDEERIRPSRFPRAARRMDTLNDLLAASDVISLHCALTNDTVQI 240
Query: 236 INAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMP 295
+NAECLQHIKPGAFLVNTGS QLLDDCAVKQLLIDGT+AGCALDGAEGPQWMEAWV+EMP
Sbjct: 241 LNAECLQHIKPGAFLVNTGSCQLLDDCAVKQLLIDGTIAGCALDGAEGPQWMEAWVKEMP 300
Query: 296 NVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAI-SDTEGCENEIDDEIEQYN 354
NVLILPRSADYSEEVWMEIR+KAIS+L +FF DGVIP N + + ++E + +
Sbjct: 301 NVLILPRSADYSEEVWMEIREKAISILHSFFLDGVIPSNTVSDEEVEESEASEEEEQSPS 360
Query: 355 KLDKVSTLEGSVGGQ----LTDDIQVSPEDS-LKKGISWSRDSPSQLQGSGFSQNSANTK 409
K +K++ +E + Q LT V E S LK+ + SP Q SQN+A K
Sbjct: 361 KHEKLAIVESTSRQQGESTLTSTEIVRREASELKESL-----SPGQQH---VSQNTA-VK 411
Query: 410 SDGRRSRSGKKAKKRHARQKSLQKPDDPSALEKESTSHKEDDTAMSGTDQ---ASSRCAS 466
+GRRSRSGKKAKKRH++QK +QK D S L +ESTS + DD AMS T++ +SSRCAS
Sbjct: 412 PEGRRSRSGKKAKKRHSQQKYMQKTDGSSGLNEESTSRR-DDIAMSDTEEVLSSSSRCAS 470
Query: 467 PEELRSRKTPIESIQESTSKKLSRSSKKLSEVSGETLKDGYVVALYARDRPALHISRQRH 526
PE+ RSRKTP+E +QES+ +L SSKK S E LKDGYVVALYA+D LH+SRQR
Sbjct: 471 PEDSRSRKTPLEVMQESSPNQLVMSSKKFIGKSSELLKDGYVVALYAKDLSGLHVSRQRT 530
Query: 527 KGGGWILETMSNVTKRDPAAQFLIC-KSKDTIGLRSFTAGGKLLQINRRMEFVFASHSFD 585
K GGW L+T+SNV+KRDPAAQF+I ++KDT+GLRSF AGGKLLQINRRMEFVFASHSFD
Sbjct: 531 KNGGWFLDTLSNVSKRDPAAQFIIAYRNKDTVGLRSFAAGGKLLQINRRMEFVFASHSFD 590
Query: 586 AWESWAIEGPLEECRLVNCRN 606
WESW++EG L+ECRLVNCRN
Sbjct: 591 VWESWSLEGSLDECRLVNCRN 611
|
Involved in controlling the equilibrium between tubular and stacked structures in the Golgi complex (By similarity). Required for cortical microtubules (MTs) arrangement that confers cell shape. Regulates the width of leaves by controlling the polar elongation of leaf cells. Involved in the regulation of trichome branching. Seems to not be able to regulate gene transcription. Regulates epidermal cell divisions and elongation in a non-cell-autonomous manner (regulated by subepidermal cells), but regulates epidermal cell polarity, shape, trichome branching and elongation in a cell-autonomous manner. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9YHU0|CTBP1_XENLA C-terminal-binding protein 1 OS=Xenopus laevis GN=ctbp1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 135 bits (341), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 99/320 (30%), Positives = 161/320 (50%), Gaps = 13/320 (4%)
Query: 7 PAAMPHRDNPTPLPSVVALNCIEDCVLEQDSL---AGVALVEHVPLGRLADGKIEAAAAV 63
P M +P PL VAL DC +E L A VA + + + + A
Sbjct: 17 PPIMNGPMHPRPL---VALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGA 73
Query: 64 LLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVM 123
L++ L R + + ++I+ +GS +D A DLG+ + +V + EE AD+ M
Sbjct: 74 LMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTM 133
Query: 124 ALLLGLLRRTHLLARHALSASGWLGSVQPL---CRGMRRCRGLVLGIVGRSASARALATR 180
+L L RRT L AL + SV+ + G R RG LGI+G +A+A R
Sbjct: 134 CHILNLYRRTTWL-HQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALR 192
Query: 181 SLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240
+ +F +V ++D P + +R+ TL DLL SD ++LHC + + +IN
Sbjct: 193 AKTFGFNVFFYD-PYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFT 251
Query: 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGP--QWMEAWVREMPNVL 298
++ ++ GAFLVNT L+D+ A+ Q L +G + G ALD E + + +++ PN++
Sbjct: 252 IKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFTQGPLKDAPNLI 311
Query: 299 ILPRSADYSEEVWMEIRDKA 318
P +A YSE+ +E+R++A
Sbjct: 312 CTPHAAWYSEQASIEMREEA 331
|
Corepressor targeting diverse transcription regulators. Has dehydrogenase activity. Xenopus laevis (taxid: 8355) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9W758|CTBP2_XENLA C-terminal-binding protein 2 OS=Xenopus laevis GN=ctbp2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 135 bits (341), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 95/316 (30%), Positives = 159/316 (50%), Gaps = 10/316 (3%)
Query: 11 PHRDNPTPLPSVVALNCIEDCVLEQDSL---AGVALVEHVPLGRLADGKIEAAAAVLLHS 67
P + P P+ +VAL DC +E L A VA + + + + A L++
Sbjct: 21 PILNGPMPVRPLVALLDGRDCTIEMPILKDVATVAFCDAQSTQEIHEKVLSEAVGALMYH 80
Query: 68 LAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLL 127
L R + + ++I+ +GS +D AA+LG+ + ++ ++ EE AD+ + +L
Sbjct: 81 TITLSREDLEKFKALRIIIKIGSGYDNIDIKSAAELGIAVCNIPSASVEETADSTLCHIL 140
Query: 128 GLLRRTHLLARHALSASGWLGSVQPL---CRGMRRCRGLVLGIVGRSASARALATRSLSF 184
L RR L A+ SV+ + G R RG LGI+G +A+A R+ +F
Sbjct: 141 NLYRRVTWL-HQAMREGNRPASVEQIREVAGGAARIRGETLGIIGLGRIGQAVALRAKAF 199
Query: 185 KMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHI 244
+V+++D P V +RM TL +LL SD I+LHC + + +IN ++ +
Sbjct: 200 NFTVIFYD-PYLADGVERSLGLQRMATLQELLMHSDCITLHCNLNEHNHHLINDFTIKQM 258
Query: 245 KPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGP--QWMEAWVREMPNVLILPR 302
+ G FLVNT L+D+ A+ Q L DG + G ALD E + + +++ PN++ P
Sbjct: 259 RQGCFLVNTARGGLVDEKALAQALKDGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPH 318
Query: 303 SADYSEEVWMEIRDKA 318
+A YSE +E R++A
Sbjct: 319 TAWYSEHASIEAREEA 334
|
Corepressor targeting diverse transcription regulators. Xenopus laevis (taxid: 8355) |
| >sp|Q9Z2F5|CTBP1_RAT C-terminal-binding protein 1 OS=Rattus norvegicus GN=Ctbp1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/325 (30%), Positives = 163/325 (50%), Gaps = 13/325 (4%)
Query: 2 MKNRFPAAMPHRDNPTPLPSVVALNCIEDCVLEQDSL---AGVALVEHVPLGRLADGKIE 58
M P M +P PL VAL DC +E L A VA + + + +
Sbjct: 1 MSGVRPPIMNGPMHPRPL---VALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLN 57
Query: 59 AAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEI 118
A L++ L R + + ++I+ +GS +D A DLG+ + +V + EE
Sbjct: 58 EAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEET 117
Query: 119 ADTVMALLLGLLRRTHLLARHALSASGWLGSVQPL---CRGMRRCRGLVLGIVGRSASAR 175
AD+ + +L L RRT L AL + SV+ + G R RG LGI+G +
Sbjct: 118 ADSTLCHILNLYRRTTWL-HQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQ 176
Query: 176 ALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQI 235
A+A R+ +F +VL++D P + +R+ TL DLL SD ++LHC + + +
Sbjct: 177 AVALRAKAFGFNVLFYD-PYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHL 235
Query: 236 INAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGP--QWMEAWVRE 293
IN ++ ++ GAFLVNT L+D+ A+ Q L +G + G ALD E + + +++
Sbjct: 236 INDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKD 295
Query: 294 MPNVLILPRSADYSEEVWMEIRDKA 318
PN++ P +A YSE+ +E+R++A
Sbjct: 296 APNLICTPHAAWYSEQASIEMREEA 320
|
Involved in controlling the equilibrium between tubular and stacked structures in the Golgi complex. Corepressor targeting diverse transcription regulators such as GLIS2. Has dehydrogenase activity. Functions in brown adipose tissue (BAT) differentiation. Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O88712|CTBP1_MOUSE C-terminal-binding protein 1 OS=Mus musculus GN=Ctbp1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 99/320 (30%), Positives = 162/320 (50%), Gaps = 13/320 (4%)
Query: 7 PAAMPHRDNPTPLPSVVALNCIEDCVLEQDSL---AGVALVEHVPLGRLADGKIEAAAAV 63
P M +P PL VAL DC +E L A VA + + + + A
Sbjct: 17 PPIMNGPMHPRPL---VALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGA 73
Query: 64 LLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVM 123
L++ L R + + ++I+ +GS +D A DLG+ + +V + EE AD+ +
Sbjct: 74 LMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTL 133
Query: 124 ALLLGLLRRTHLLARHALSASGWLGSVQPL---CRGMRRCRGLVLGIVGRSASARALATR 180
+L L RRT L AL + SV+ + G R RG LGI+G +A+A R
Sbjct: 134 CHILNLYRRTTWL-HQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALR 192
Query: 181 SLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240
+ +F +VL++D P + +R+ TL DLL SD ++LHC + + +IN
Sbjct: 193 AKAFGFNVLFYD-PYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFT 251
Query: 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGP--QWMEAWVREMPNVL 298
++ ++ GAFLVNT L+D+ A+ Q L +G + G ALD E + + +++ PN++
Sbjct: 252 VKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLI 311
Query: 299 ILPRSADYSEEVWMEIRDKA 318
P +A YSE+ +E+R++A
Sbjct: 312 CTPHAAWYSEQASIEMREEA 331
|
Involved in controlling the equilibrium between tubular and stacked structures in the Golgi complex (By similarity). Co-repressor targeting diverse transcription regulators such as GLIS2. Has dehydrogenase activity. Functions in brown adipose tissue (BAT) differentiation. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O46036|CTBP_DROME C-terminal-binding protein OS=Drosophila melanogaster GN=CtBP PE=1 SV=3 | Back alignment and function description |
|---|
Score = 134 bits (337), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/267 (31%), Positives = 140/267 (52%), Gaps = 10/267 (3%)
Query: 58 EAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEE 117
EA A++ H++ L + + + ++I+ +GS +D A +LG+ + +V EE
Sbjct: 69 EAVGALMWHTI-ILTKEDLEKFKALRIIVRIGSGTDNIDVKAAGELGIAVCNVPGYGVEE 127
Query: 118 IADTVMALLLGLLRRTHLLARHALSASGWLG--SVQPLCRGMRRCRGLVLGIVGRSASAR 175
+ADT M L+L L RRT+ LA + G V+ G R RG LG+VG
Sbjct: 128 VADTTMCLILNLYRRTYWLANMVREGKKFTGPEQVREAAHGCARIRGDTLGLVGLGRIGS 187
Query: 176 ALATRSLSFKMSVLYFD--VPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI 233
A+A R+ +F +V+++D +P+G K R+ TL DLL SD +SLHC + +
Sbjct: 188 AVALRAKAFGFNVIFYDPYLPDGIDKSL---GLTRVYTLQDLLFQSDCVSLHCTLNEHNH 244
Query: 234 QIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQW--MEAWV 291
+IN ++ ++PGAFLVNT L+DD + L G + ALD E + + +
Sbjct: 245 HLINEFTIKQMRPGAFLVNTARGGLVDDETLALALKQGRIRAAALDVHENEPYNVFQGAL 304
Query: 292 REMPNVLILPRSADYSEEVWMEIRDKA 318
++ PN++ P +A +S+ E+R+ A
Sbjct: 305 KDAPNLICTPHAAFFSDASATELREMA 331
|
Corepressor targeting diverse transcription regulators. Hairy-interacting protein required for embryonic segmentation and hairy-mediated transcriptional repression. Drosophila melanogaster (taxid: 7227) |
| >sp|P56545|CTBP2_HUMAN C-terminal-binding protein 2 OS=Homo sapiens GN=CTBP2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 133 bits (335), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 161/312 (51%), Gaps = 13/312 (4%)
Query: 15 NPTPLPSVVALNCIEDCVLEQ---DSLAGVALVEHVPLGRLADGKIEAAAAVLLHSLAYL 71
+P PL VAL DC +E LA VA + + + + A +++ L
Sbjct: 31 HPRPL---VALLDGRDCTVEMPILKDLATVAFCDAQSTQEIHEKVLNEAVGAMMYHTITL 87
Query: 72 PRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLR 131
R + + ++I+ +GS VD A +LG+ + ++ ++ EE AD+ + +L L R
Sbjct: 88 TREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTICHILNLYR 147
Query: 132 RTHLLARHALSASGWLGSVQPL---CRGMRRCRGLVLGIVGRSASARALATRSLSFKMSV 188
R L + AL + SV+ + G R RG LG++G + +A+A R+ +F SV
Sbjct: 148 RNTWLYQ-ALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSV 206
Query: 189 LYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGA 248
+++D P + + +R+ TL DLL SD +SLHC + + +IN ++ ++ GA
Sbjct: 207 IFYD-PYLQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGA 265
Query: 249 FLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGP--QWMEAWVREMPNVLILPRSADY 306
FLVN L+D+ A+ Q L +G + G ALD E + + +++ PN++ P +A Y
Sbjct: 266 FLVNAARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKDAPNLICTPHTAWY 325
Query: 307 SEEVWMEIRDKA 318
SE+ +E+R+ A
Sbjct: 326 SEQASLEMREAA 337
|
Isoform 2 probably acts as a scaffold for specialized synapses. Homo sapiens (taxid: 9606) |
| >sp|Q9EQH5|CTBP2_RAT C-terminal-binding protein 2 OS=Rattus norvegicus GN=Ctbp2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 133 bits (335), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 161/312 (51%), Gaps = 13/312 (4%)
Query: 15 NPTPLPSVVALNCIEDCVLEQ---DSLAGVALVEHVPLGRLADGKIEAAAAVLLHSLAYL 71
+P PL VAL DC +E LA VA + + + + A +++ L
Sbjct: 31 HPRPL---VALLDGRDCTVEMPILKDLATVAFCDAQSTQEIHEKVLNEAVGAMMYHTITL 87
Query: 72 PRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLR 131
R + + ++I+ +GS VD A +LG+ + ++ ++ EE AD+ + +L L R
Sbjct: 88 TREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTVCHILNLYR 147
Query: 132 RTHLLARHALSASGWLGSVQPL---CRGMRRCRGLVLGIVGRSASARALATRSLSFKMSV 188
R L + AL + SV+ + G R RG LG++G + +A+A R+ +F SV
Sbjct: 148 RNTWLYQ-ALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSV 206
Query: 189 LYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGA 248
+++D P + + +R+ TL DLL SD +SLHC + + +IN ++ ++ GA
Sbjct: 207 IFYD-PYLQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGA 265
Query: 249 FLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGP--QWMEAWVREMPNVLILPRSADY 306
FLVN L+D+ A+ Q L +G + G ALD E + + +++ PN++ P +A Y
Sbjct: 266 FLVNAARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKDAPNLICTPHTAWY 325
Query: 307 SEEVWMEIRDKA 318
SE+ +E+R+ A
Sbjct: 326 SEQASLEMREAA 337
|
Corepressor targeting diverse transcription regulators. Functions in brown adipose tissue (BAT) differentiation. Isoform 2 probably acts as a scaffold for specialized synapses. Rattus norvegicus (taxid: 10116) |
| >sp|Q0VCQ1|CTBP2_BOVIN C-terminal-binding protein 2 OS=Bos taurus GN=CTBP2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 133 bits (334), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 160/312 (51%), Gaps = 13/312 (4%)
Query: 15 NPTPLPSVVALNCIEDCVLEQ---DSLAGVALVEHVPLGRLADGKIEAAAAVLLHSLAYL 71
+P PL VAL DC +E LA VA + + + + A +++ L
Sbjct: 31 HPRPL---VALLDGRDCTVEMPILKDLATVAFCDAQSTQEIHEKVLNEAVGAMMYHTITL 87
Query: 72 PRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLR 131
R + + ++I+ +GS VD A +LG+ + ++ ++ EE AD+ + +L L R
Sbjct: 88 TREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTICHILNLYR 147
Query: 132 RTHLLARHALSASGWLGSVQPL---CRGMRRCRGLVLGIVGRSASARALATRSLSFKMSV 188
R L + AL + SV+ + G R RG LG++G + +A+A R+ +F SV
Sbjct: 148 RNTWLYQ-ALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSV 206
Query: 189 LYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGA 248
L++D P + +R+ TL DLL SD +SLHC + + +IN ++ ++ GA
Sbjct: 207 LFYD-PYLQDGTERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGA 265
Query: 249 FLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGP--QWMEAWVREMPNVLILPRSADY 306
FLVN L+D+ A+ Q L +G + G ALD E + + +++ PN++ P +A Y
Sbjct: 266 FLVNAARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKDAPNLICTPHTAWY 325
Query: 307 SEEVWMEIRDKA 318
SE+ +E+R+ A
Sbjct: 326 SEQASLEMREAA 337
|
Corepressor targeting diverse transcription regulators. Functions in brown adipose tissue (BAT) differentiation (By similarity). Isoform 2 probably acts as a scaffold for specialized synapses. Bos taurus (taxid: 9913) |
| >sp|P56546|CTBP2_MOUSE C-terminal-binding protein 2 OS=Mus musculus GN=Ctbp2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 133 bits (334), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 161/312 (51%), Gaps = 13/312 (4%)
Query: 15 NPTPLPSVVALNCIEDCVLEQ---DSLAGVALVEHVPLGRLADGKIEAAAAVLLHSLAYL 71
+P PL VAL DC +E LA VA + + + + A +++ L
Sbjct: 31 HPRPL---VALLDGRDCTVEMPILKDLATVAFCDAQSTQEIHEKVLNEAVGAMMYHTITL 87
Query: 72 PRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLR 131
R + + ++I+ +GS VD A +LG+ + ++ ++ EE AD+ + +L L R
Sbjct: 88 TREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTVCHILNLYR 147
Query: 132 RTHLLARHALSASGWLGSVQPL---CRGMRRCRGLVLGIVGRSASARALATRSLSFKMSV 188
R L + AL + SV+ + G R RG LG++G + +A+A R+ +F SV
Sbjct: 148 RNTWLYQ-ALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSV 206
Query: 189 LYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGA 248
+++D P + + +R+ TL DLL SD +SLHC + + +IN ++ ++ GA
Sbjct: 207 IFYD-PYLQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGA 265
Query: 249 FLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGP--QWMEAWVREMPNVLILPRSADY 306
FLVN L+D+ A+ Q L +G + G ALD E + + +++ PN++ P +A Y
Sbjct: 266 FLVNAARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKDAPNLICTPHTAWY 325
Query: 307 SEEVWMEIRDKA 318
SE+ +E+R+ A
Sbjct: 326 SEQASLEMREAA 337
|
Corepressor targeting diverse transcription regulators. Isoform 2 probably acts as a scaffold for specialized synapses (By similarity). Functions in brown adipose tissue (BAT) differentiation. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 620 | ||||||
| 224130386 | 655 | predicted protein [Populus trichocarpa] | 0.954 | 0.903 | 0.790 | 0.0 | |
| 359489641 | 952 | PREDICTED: C-terminal binding protein AN | 0.977 | 0.636 | 0.783 | 0.0 | |
| 255541702 | 930 | 2-hydroxyacid dehydrogenase, putative [R | 0.962 | 0.641 | 0.798 | 0.0 | |
| 387940576 | 645 | angustifolia [Gossypium arboreum] | 0.969 | 0.931 | 0.785 | 0.0 | |
| 224067934 | 620 | predicted protein [Populus trichocarpa] | 0.953 | 0.953 | 0.777 | 0.0 | |
| 356531955 | 617 | PREDICTED: C-terminal binding protein AN | 0.954 | 0.959 | 0.767 | 0.0 | |
| 356568437 | 617 | PREDICTED: C-terminal binding protein AN | 0.954 | 0.959 | 0.764 | 0.0 | |
| 449432118 | 944 | PREDICTED: C-terminal binding protein AN | 0.969 | 0.636 | 0.760 | 0.0 | |
| 449527235 | 636 | PREDICTED: C-terminal binding protein AN | 0.980 | 0.955 | 0.751 | 0.0 | |
| 356568439 | 633 | PREDICTED: C-terminal binding protein AN | 0.958 | 0.938 | 0.754 | 0.0 |
| >gi|224130386|ref|XP_002320824.1| predicted protein [Populus trichocarpa] gi|222861597|gb|EEE99139.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 973 bits (2516), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/610 (79%), Positives = 536/610 (87%), Gaps = 18/610 (2%)
Query: 19 LPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLADGKIEAAAAVLLHSLAYLPRAAQRR 78
LP VV LNCIED +EQDSL+GVAL+EHVPLGRL+DGKIE+AAAVLLHSLAYLPRAAQRR
Sbjct: 26 LPLVVTLNCIEDFAIEQDSLSGVALIEHVPLGRLSDGKIESAAAVLLHSLAYLPRAAQRR 85
Query: 79 LRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLAR 138
LRPYQLILCLGS+DR VDSALAADLGLRL+HVDTSRAEEIADTVMAL LGLLRRTHLL+R
Sbjct: 86 LRPYQLILCLGSADRAVDSALAADLGLRLVHVDTSRAEEIADTVMALFLGLLRRTHLLSR 145
Query: 139 HALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKG 198
HALSASGWLGS+QPLCRGMRRCRGLVLGIVGRSASAR+LATRSL+FKMSVLYFDV EG G
Sbjct: 146 HALSASGWLGSLQPLCRGMRRCRGLVLGIVGRSASARSLATRSLAFKMSVLYFDVHEGPG 205
Query: 199 K-----VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPG------ 247
K +TFP AARRMDTLNDLLAASD+ISLHCA+T+ET+QIIN ECLQHIKPG
Sbjct: 206 KLTRSSITFPLAARRMDTLNDLLAASDLISLHCALTNETVQIINEECLQHIKPGILLSLL 265
Query: 248 ----AFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRS 303
AFLVNTGSSQLLDDCA+KQLLIDGTLAGCALDGAEGPQWMEAWV+EMPNVLILPRS
Sbjct: 266 ILRRAFLVNTGSSQLLDDCALKQLLIDGTLAGCALDGAEGPQWMEAWVKEMPNVLILPRS 325
Query: 304 ADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTEGCENEIDDEIEQYNKLDKVSTLE 363
ADYSEEVWMEIR+KAIS+LQ+FFFDG++PKNA+SD EG E+EI DE EQ+++ DK STL+
Sbjct: 326 ADYSEEVWMEIREKAISILQSFFFDGIVPKNAVSDEEGEESEIGDESEQFHRQDKESTLQ 385
Query: 364 GSVGGQLTDDIQVSPEDSLKKGISWSRDSPSQLQGSGFSQNSANTKSDGRRSRSGKKAKK 423
SVG QLTDDIQ++PE S KK S +S SQ QGSG SQN+ T+SD RRSRSGKKAKK
Sbjct: 386 DSVGEQLTDDIQLTPETSRKKVSGQSIESTSQAQGSGMSQNT-TTRSDERRSRSGKKAKK 444
Query: 424 RHARQKSLQKPDDPSALEKESTSHKEDDTAMSGTDQ-ASSRCASPEELRSRKTPIESIQE 482
RH RQK QK D+PS LEKESTSH+EDDTAMSG+DQ +SSR ASPE+ RSRKTPIE +QE
Sbjct: 445 RHGRQKPRQKSDNPSQLEKESTSHQEDDTAMSGSDQVSSSRFASPEDSRSRKTPIELMQE 504
Query: 483 STSKKLSRSSKKLSEVSGETLKDGYVVALYARDRPALHISRQRHKGGGWILETMSNVTKR 542
S+S +LSRS K+LS S E LKDG+++ALYARDRPALH+SRQR KGGGW L+ +SNVTKR
Sbjct: 505 SSSGQLSRSGKRLSGKSDELLKDGHIIALYARDRPALHVSRQRAKGGGWFLDALSNVTKR 564
Query: 543 DPAAQFLIC-KSKDTIGLRSFTAGGKLLQINRRMEFVFASHSFDAWESWAIEGPLEECRL 601
DPAAQFL+ ++KDTIGLRSF AGGKLLQINRRMEFVF SHSFD WESW +EG L+ECRL
Sbjct: 565 DPAAQFLVVFRNKDTIGLRSFAAGGKLLQINRRMEFVFTSHSFDVWESWMLEGSLDECRL 624
Query: 602 VNCRNPLVFF 611
VNCRNPL
Sbjct: 625 VNCRNPLAIL 634
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359489641|ref|XP_002275405.2| PREDICTED: C-terminal binding protein AN-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 967 bits (2499), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/615 (78%), Positives = 541/615 (87%), Gaps = 9/615 (1%)
Query: 5 RFPAAMPHRDNPTPLPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLADGKIEAAAAVL 64
R A+ H PLP VV+LNCI+D LEQ+SL+G+A VEHV L RL+DGKIE+AAAVL
Sbjct: 318 RSSASAAHHHRSAPLPLVVSLNCIDDPSLEQESLSGIASVEHVSLARLSDGKIESAAAVL 377
Query: 65 LHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMA 124
+HSLAYLPRAAQRRLRP+QL+LCLGSSDR+VDSALAADLGLRL+HVDTSRAEE+ADTVMA
Sbjct: 378 IHSLAYLPRAAQRRLRPWQLLLCLGSSDRSVDSALAADLGLRLVHVDTSRAEEVADTVMA 437
Query: 125 LLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSF 184
L LGLLRRTHLL+RH LSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASAR+LATRSL+F
Sbjct: 438 LFLGLLRRTHLLSRHTLSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARSLATRSLAF 497
Query: 185 KMSVLYFDVPEGKGK----VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240
KM+VLYFDV EGKGK +TFP AARRMDTLNDLLAASD++SLHC +T+ET+QIINAEC
Sbjct: 498 KMNVLYFDVQEGKGKLSRSITFPPAARRMDTLNDLLAASDLVSLHCTLTNETVQIINAEC 557
Query: 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLIL 300
LQHIKPGAFLVNTGSSQLLDDCA+KQLLIDGT+AGCALDGAEGPQWMEAWV+EMPNVLIL
Sbjct: 558 LQHIKPGAFLVNTGSSQLLDDCALKQLLIDGTIAGCALDGAEGPQWMEAWVKEMPNVLIL 617
Query: 301 PRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTEGCENEIDDEIEQYNKLDKVS 360
PRSADYSEEVWMEIR+K I +LQT+FFDGVIPKN +SD E E+EI E EQ++K K
Sbjct: 618 PRSADYSEEVWMEIREKTICILQTYFFDGVIPKNTVSDEEDEESEIVYENEQFDKQYKEI 677
Query: 361 TLEGSVGGQLTDDIQVSPEDSLKKGISWSRDSPSQLQGSGFSQNSANTKSDGRRSRSGKK 420
L+GSVG QLTDD+ VSPE S KKG + S +SPSQ QGSG SQN+ N +S+G+RSRSGKK
Sbjct: 678 ALQGSVGEQLTDDVLVSPESSQKKGTNQSNESPSQHQGSGLSQNTTN-RSEGKRSRSGKK 736
Query: 421 AKKRHARQKSLQKPDDPSALEKESTSHKEDDTAMSGTDQ---ASSRCASPEELRSRKTPI 477
AKKRHARQ+SLQK DDPSALEKESTSH+EDDTAMSGTDQ +SSR ASPE+ RSRKTPI
Sbjct: 737 AKKRHARQRSLQKSDDPSALEKESTSHREDDTAMSGTDQVLSSSSRFASPEDSRSRKTPI 796
Query: 478 ESIQESTSKKLSRSSKKLSEVSGETLKDGYVVALYARDRPALHISRQRHKGGGWILETMS 537
ES+QESTS++L +SS +LS+ LKDGYV+AL+ARDR ALH+SRQR +GGGW L+TMS
Sbjct: 797 ESVQESTSEQLLKSSMRLSKPGEVLLKDGYVIALHARDRAALHVSRQRVQGGGWFLDTMS 856
Query: 538 NVTKRDPAAQFLIC-KSKDTIGLRSFTAGGKLLQINRRMEFVFASHSFDAWESWAIEGPL 596
NVTKRDPAAQFLI +SKDTIGLRSF AGGKLLQINRRMEFVFASHSFD WESW +EG L
Sbjct: 857 NVTKRDPAAQFLIAFRSKDTIGLRSFAAGGKLLQINRRMEFVFASHSFDVWESWMLEGSL 916
Query: 597 EECRLVNCRNPLVFF 611
EECRLVNCRNPL
Sbjct: 917 EECRLVNCRNPLAVL 931
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255541702|ref|XP_002511915.1| 2-hydroxyacid dehydrogenase, putative [Ricinus communis] gi|223549095|gb|EEF50584.1| 2-hydroxyacid dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 965 bits (2494), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/609 (79%), Positives = 541/609 (88%), Gaps = 12/609 (1%)
Query: 12 HRDNPTPLPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLADGKIEAAAAVLLHSLAYL 71
H+ + PLP VV+LNCIEDC +EQDSLAGVA VEHVPL RLADGKIE+AAAVLLHSLAYL
Sbjct: 304 HKSSSQPLPLVVSLNCIEDCSIEQDSLAGVATVEHVPLSRLADGKIESAAAVLLHSLAYL 363
Query: 72 PRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLR 131
PRAAQRRLRPYQL+LCLGS+DR VDSALAADLGLRL+HVDTSRAEEIADTVMAL LGLLR
Sbjct: 364 PRAAQRRLRPYQLLLCLGSADRAVDSALAADLGLRLVHVDTSRAEEIADTVMALFLGLLR 423
Query: 132 RTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYF 191
RTHLL+RHALSASGWLGSVQPLCRGMRRCRGLVLGI+GRSASAR+LATRSL+FKMSVLYF
Sbjct: 424 RTHLLSRHALSASGWLGSVQPLCRGMRRCRGLVLGIIGRSASARSLATRSLAFKMSVLYF 483
Query: 192 DVPEGKGKVT-----FPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKP 246
D+ EGKGKV+ FP AARRMDTLNDLLAASD+ISLHCA+++ET+QI+NAECLQHIKP
Sbjct: 484 DIHEGKGKVSRSSLRFPPAARRMDTLNDLLAASDLISLHCALSNETVQILNAECLQHIKP 543
Query: 247 GAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADY 306
GAFLVNTGSSQLLDDC++KQLLIDGTLAGCALDGAEGPQWMEAWV+EMPNVLILPRSADY
Sbjct: 544 GAFLVNTGSSQLLDDCSLKQLLIDGTLAGCALDGAEGPQWMEAWVKEMPNVLILPRSADY 603
Query: 307 SEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTEGCENEIDDEIEQYNKLDKVSTLEGSV 366
SEEVW+EIRDKAIS+LQ+FFFDGVIPK+ ISD E E+E+ DE EQ++K DK S L+ S+
Sbjct: 604 SEEVWVEIRDKAISLLQSFFFDGVIPKDIISDEE-EESEMGDENEQFHKQDKESFLQASI 662
Query: 367 GGQLTDDIQVSPEDSLKKGISWSRDSPSQLQGSGFSQNSANTKSDGRRSRSGKKAKKRHA 426
G +LTDDIQVSPE + K I+ S +S SQ QGSG SQ +A +S+G+RSRSGKKAKKRH
Sbjct: 663 GERLTDDIQVSPESTRSKVINQSTES-SQAQGSGLSQTTA-ARSEGKRSRSGKKAKKRHG 720
Query: 427 RQKSLQKPDDPSALEKESTSHKEDDTAMSGTDQ---ASSRCASPEELRSRKTPIESIQES 483
RQKS+QKPDD S LEKESTSH+EDD MSGTDQ +SSR ASPE+ RSRKTPIESIQES
Sbjct: 721 RQKSIQKPDDLSHLEKESTSHREDDATMSGTDQVLSSSSRFASPEDSRSRKTPIESIQES 780
Query: 484 TSKKLSRSSKKLSEVSGETLKDGYVVALYARDRPALHISRQRHKGGGWILETMSNVTKRD 543
+ +L RSSKKLS SGE LKDGYV+ALYARDRPALH+SRQR KGGGW L+ MSNVTKRD
Sbjct: 781 NADQLLRSSKKLSGKSGELLKDGYVIALYARDRPALHVSRQRVKGGGWFLDAMSNVTKRD 840
Query: 544 PAAQFLIC-KSKDTIGLRSFTAGGKLLQINRRMEFVFASHSFDAWESWAIEGPLEECRLV 602
PA+QFL+ +SKDTIGLRSF AGGKLLQINRR EFVFASHSFD WESW +EG LE+CRLV
Sbjct: 841 PASQFLVVFRSKDTIGLRSFAAGGKLLQINRRTEFVFASHSFDVWESWMLEGSLEDCRLV 900
Query: 603 NCRNPLVFF 611
NCRNPL
Sbjct: 901 NCRNPLAVL 909
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|387940576|gb|AFK13152.1| angustifolia [Gossypium arboreum] | Back alignment and taxonomy information |
|---|
Score = 942 bits (2435), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/610 (78%), Positives = 533/610 (87%), Gaps = 9/610 (1%)
Query: 5 RFPAAMPHRDNPTPLPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLADGKIEAAAAVL 64
R A MP R+NPTPLP VV+LNC+EDCVLEQ+SLAGV+L EHVPL RLADGKIEAAAAVL
Sbjct: 13 RSSATMPRRNNPTPLPLVVSLNCVEDCVLEQESLAGVSLFEHVPLSRLADGKIEAAAAVL 72
Query: 65 LHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMA 124
LHSLAYLPRAAQRRLRPYQLILCLGSSDR VDSALAADLGLRL+HVD SRAEEIADTVMA
Sbjct: 73 LHSLAYLPRAAQRRLRPYQLILCLGSSDRAVDSALAADLGLRLVHVDVSRAEEIADTVMA 132
Query: 125 LLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSF 184
L LGLLRRTHLL+RHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASAR+LA+RSL+F
Sbjct: 133 LFLGLLRRTHLLSRHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARSLASRSLAF 192
Query: 185 KMSVLYFDVPEGKGKV-----TFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAE 239
+MSVLYFDV E GKV FP AARRMDTLNDLLAASD+ISLHCA+T+ET+QIIN+E
Sbjct: 193 RMSVLYFDVVEENGKVRRSSIRFPPAARRMDTLNDLLAASDLISLHCALTNETVQIINSE 252
Query: 240 CLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLI 299
CLQH+KPGAFLVNTGSSQLLDDCA+KQLLIDGTLAGCALDGAEGPQWMEAWV+EMPNVLI
Sbjct: 253 CLQHVKPGAFLVNTGSSQLLDDCALKQLLIDGTLAGCALDGAEGPQWMEAWVKEMPNVLI 312
Query: 300 LPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTEGCENEIDDEIEQYNKLDKV 359
LPRSADYSEE WMEIR+KAIS+LQ+FFFDGVIPK+AISD + E+EI DE Q+ DK
Sbjct: 313 LPRSADYSEEAWMEIREKAISMLQSFFFDGVIPKDAISDEDEEESEIVDEKGQFRIQDKE 372
Query: 360 STLEGSVGGQLTDDIQVSPEDSLKKGISWSRDSPSQLQGSGFSQNSANTKSDGRRSRSGK 419
S L+GS QL ++IQ SPE SLKK + S+ S +Q G N A KS+GRRSR GK
Sbjct: 373 SALQGSSAEQLINEIQQSPESSLKKDSNQSKQS-NQSPSPGLPHNIA-AKSEGRRSRLGK 430
Query: 420 KAKKRHARQKSLQKPDDPSALEKESTSHKEDDTAMSGTDQA-SSRCASPEELRSRKTPIE 478
KAKKR ARQK+LQK D+P LEKESTS +EDDTAMSGTDQA SS SPE RSRKTPIE
Sbjct: 431 KAKKRQARQKTLQKSDEPLILEKESTSQREDDTAMSGTDQALSSGSQSPEGSRSRKTPIE 490
Query: 479 SIQESTSKKLSRSSKKLSEVSGETLKDGYVVALYARDRPALHISRQRHKGGGWILETMSN 538
+Q STS +L ++SKKLSEVSG++LKDGY++ALYARDRPALH+SRQR +GGGW L+TMSN
Sbjct: 491 LMQVSTSDQLLKTSKKLSEVSGDSLKDGYIIALYARDRPALHVSRQRVEGGGWFLDTMSN 550
Query: 539 VTKRDPAAQFLIC-KSKDTIGLRSFTAGGKLLQINRRMEFVFASHSFDAWESWAIEGPLE 597
VTK+DPAAQFL+ ++K+TIGLRS AGGKLLQINRRMEFVFASHSFD WESW ++GPLE
Sbjct: 551 VTKKDPAAQFLVVYRNKETIGLRSCAAGGKLLQINRRMEFVFASHSFDVWESWTLQGPLE 610
Query: 598 ECRLVNCRNP 607
ECRLVNCRNP
Sbjct: 611 ECRLVNCRNP 620
|
Source: Gossypium arboreum Species: Gossypium arboreum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224067934|ref|XP_002302606.1| predicted protein [Populus trichocarpa] gi|222844332|gb|EEE81879.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 924 bits (2387), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/601 (77%), Positives = 520/601 (86%), Gaps = 10/601 (1%)
Query: 20 PSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLADGKIEAAAAVLLHSLAYLPRAAQRRL 79
P VV LNCIEDC +EQDSL+GVA +EHVPL RL+ GKIE+AAAVLLHSLAYLPRAAQRRL
Sbjct: 1 PLVVTLNCIEDCAIEQDSLSGVASIEHVPLSRLSGGKIESAAAVLLHSLAYLPRAAQRRL 60
Query: 80 RPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARH 139
RPYQLILCLGS+DR VDSALAADLGLRL+HVD SRAEEIADTVMAL LGLLRRTHLL+RH
Sbjct: 61 RPYQLILCLGSADRAVDSALAADLGLRLVHVDNSRAEEIADTVMALFLGLLRRTHLLSRH 120
Query: 140 ALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKG- 198
LSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASA++LATRSL+FK+SVLYFDV EG G
Sbjct: 121 TLSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASAKSLATRSLAFKISVLYFDVHEGPGI 180
Query: 199 ----KVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTG 254
+ FPSAARRMDTLNDLLAASD+ISLHCA+T+ET+QII+AECLQHIKPGAFLVNTG
Sbjct: 181 LSRSSIAFPSAARRMDTLNDLLAASDLISLHCALTNETVQIISAECLQHIKPGAFLVNTG 240
Query: 255 SSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEI 314
SSQLLDDCA+KQLLIDGTLAGCALDGAEGPQWMEAWV+EMPNVLILPRSADYSEEVWMEI
Sbjct: 241 SSQLLDDCALKQLLIDGTLAGCALDGAEGPQWMEAWVKEMPNVLILPRSADYSEEVWMEI 300
Query: 315 RDKAISVLQTFFFDGVIPKNAISDTEGCENEIDDEIEQYNKLDKVSTLEGSVGGQLTDDI 374
RDKAIS+LQ+FF DG +PKNA+SD E E+EI +E +Q+++ DK STL+ SV QLTDD+
Sbjct: 301 RDKAISILQSFFLDGTVPKNAVSDEEEEESEIGEESDQFHRQDKESTLQDSVVEQLTDDV 360
Query: 375 QVSPEDSLKKGISWSRDSPSQLQGSGFSQNSANTKSDGRRSRSGKKAKKRHARQKSLQKP 434
QV+ E KK IS S +S S+ Q SG SQN A T+++GRR+R GKKAKKRH QKS QK
Sbjct: 361 QVTLESYHKKVISQSIESTSKAQVSGMSQNMA-TRTEGRRNRLGKKAKKRHGHQKSQQKS 419
Query: 435 DDPSALEKESTSHKEDDTAMSGTDQ---ASSRCASPEELRSRKTPIESIQESTSKKLSRS 491
DDPS LEKE TSH+EDDTAMSGTDQ + SR ASPE+ RSRKTPIE Q+ TS +LSRS
Sbjct: 420 DDPSQLEKEITSHQEDDTAMSGTDQVLSSGSRFASPEDSRSRKTPIELTQDPTSGQLSRS 479
Query: 492 SKKLSEVSGETLKDGYVVALYARDRPALHISRQRHKGGGWILETMSNVTKRDPAAQFLIC 551
KKLS S + LKDG+++ALYARD ALH+SRQR KGGGW L+ MSNVTKRDPAAQFL+
Sbjct: 480 GKKLSGKSDKLLKDGHIIALYARDHSALHVSRQRVKGGGWFLDAMSNVTKRDPAAQFLVV 539
Query: 552 -KSKDTIGLRSFTAGGKLLQINRRMEFVFASHSFDAWESWAIEGPLEECRLVNCRNPLVF 610
+SKDTIGLRSF AGGKLLQINRR EFVFASHSFD WESW +EG LEECRLVNCRNPL
Sbjct: 540 FRSKDTIGLRSFAAGGKLLQINRRTEFVFASHSFDVWESWMLEGSLEECRLVNCRNPLAV 599
Query: 611 F 611
Sbjct: 600 L 600
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356531955|ref|XP_003534541.1| PREDICTED: C-terminal binding protein AN-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 923 bits (2385), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/599 (76%), Positives = 519/599 (86%), Gaps = 7/599 (1%)
Query: 10 MPHRDNPTPLPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLADGKIEAAAAVLLHSLA 69
MPHR+NP PLP VV LNC+EDC LE +SLAGVA VEHVPL RL+DGKIE+AAAVLLHSLA
Sbjct: 1 MPHRNNPAPLPLVVTLNCVEDCSLEFESLAGVATVEHVPLSRLSDGKIESAAAVLLHSLA 60
Query: 70 YLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGL 129
YLPRAAQRRLR Y LILCLGS+DR VDSALAADLGLRL+HVDTSRAEEIADTVMAL LGL
Sbjct: 61 YLPRAAQRRLRSYHLILCLGSADRAVDSALAADLGLRLVHVDTSRAEEIADTVMALFLGL 120
Query: 130 LRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVL 189
LRRTHLL+RHALSASGWLGSVQPLCRGMRRCRGLVLGIVG S+SAR+LATRSL+FKMSVL
Sbjct: 121 LRRTHLLSRHALSASGWLGSVQPLCRGMRRCRGLVLGIVGISSSARSLATRSLAFKMSVL 180
Query: 190 YFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAF 249
YFD KGKV FP AARRMDTLNDLLAASD+ISLHCA+T+ET+QIINAECLQH+KPGAF
Sbjct: 181 YFDARAEKGKVKFPPAARRMDTLNDLLAASDLISLHCALTNETMQIINAECLQHVKPGAF 240
Query: 250 LVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEE 309
+VNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWV+EMPNVLILPRSADYSEE
Sbjct: 241 IVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVKEMPNVLILPRSADYSEE 300
Query: 310 VWMEIRDKAISVLQTFFFDGVIPKNAISDTEGCENEIDDEIEQYNKLDKVSTLEGSVGGQ 369
VWMEIR+KAIS+LQTFF DG+IPKNA+SD E E+E+D+E EQ ++ + L+ V Q
Sbjct: 301 VWMEIREKAISILQTFFIDGIIPKNAMSDVEE-ESEVDNESEQSDQQYNGNALQIIVREQ 359
Query: 370 LTDDIQVSPEDSLKKGISWSRDSPSQLQGSGFSQNSANTKSDGRRSRSGKKAKKRHARQK 429
TDD+ VSP++S KK + ++S SQ Q S SQ S + +S+GRRSRSGKKAKKRH R K
Sbjct: 360 -TDDVHVSPDNSQKKISTQMKESSSQHQVSSLSQ-STSARSEGRRSRSGKKAKKRHTRHK 417
Query: 430 SLQKPDDPSALEKESTSHKEDDTAMSGTDQASSRCASPEELRSRKTPIESIQESTSKKLS 489
S QK +DPSALEKE TS + DDTAMSGTDQA S +S E+ R+RKTPIES+QE T ++
Sbjct: 418 SQQKHEDPSALEKEGTSQR-DDTAMSGTDQALS--SSSEDSRNRKTPIESMQEPTGAQVI 474
Query: 490 RSSKKLSEVSGETLKDGYVVALYARDRPALHISRQRHKGGGWILETMSNVTKRDPAAQFL 549
+SS +LS E LKDGY++ALYARD ALH+SRQR KGGGWI+++MSNV+KRDPAAQFL
Sbjct: 475 KSSLRLSGNCTELLKDGYIIALYARDCSALHVSRQRVKGGGWIMDSMSNVSKRDPAAQFL 534
Query: 550 IC-KSKDTIGLRSFTAGGKLLQINRRMEFVFASHSFDAWESWAIEGPLEECRLVNCRNP 607
I +SKDTIGLRS AGGKLLQINRRMEFVFASHSFD WE+W +EG L+ECRLVNCRNP
Sbjct: 535 IIFRSKDTIGLRSLAAGGKLLQINRRMEFVFASHSFDVWENWTLEGSLQECRLVNCRNP 593
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356568437|ref|XP_003552417.1| PREDICTED: C-terminal binding protein AN-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 905 bits (2340), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/599 (76%), Positives = 518/599 (86%), Gaps = 7/599 (1%)
Query: 10 MPHRDNPTPLPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLADGKIEAAAAVLLHSLA 69
MPHR+NP PLP VV LNC+EDC LE +SLAGVA V+HVPL L+DGKIE+AAAVLLHSLA
Sbjct: 1 MPHRNNPAPLPLVVTLNCVEDCSLEFESLAGVATVQHVPLSCLSDGKIESAAAVLLHSLA 60
Query: 70 YLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGL 129
YLPRAAQRRLRPY LILCLGS+DR VDSALAADLGLRL+HVDTSRAEEIAD+VMAL LGL
Sbjct: 61 YLPRAAQRRLRPYHLILCLGSADRAVDSALAADLGLRLVHVDTSRAEEIADSVMALFLGL 120
Query: 130 LRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVL 189
LRRTHLL+RH LSASGWLGSVQPLCRGMRRCRGLVLGIVG SASAR+LATRSL+FKMSVL
Sbjct: 121 LRRTHLLSRHPLSASGWLGSVQPLCRGMRRCRGLVLGIVGISASARSLATRSLAFKMSVL 180
Query: 190 YFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAF 249
YFD GKGKV FP AARRMDTLNDLLAASD+ISLHCA+T+ET+QIINAECLQH+KPGAF
Sbjct: 181 YFDARAGKGKVKFPPAARRMDTLNDLLAASDLISLHCALTNETMQIINAECLQHVKPGAF 240
Query: 250 LVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEE 309
+VNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWV+EMPNVLILP+SADYSEE
Sbjct: 241 IVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVKEMPNVLILPQSADYSEE 300
Query: 310 VWMEIRDKAISVLQTFFFDGVIPKNAISDTEGCENEIDDEIEQYNKLDKVSTLEGSVGGQ 369
VWMEIR+KAIS+LQTFF DG+IPKNAISD E E+E+D+E E ++ + L+ V Q
Sbjct: 301 VWMEIREKAISILQTFFIDGIIPKNAISDVEE-ESEVDNESELSDQQYNENALQIIVREQ 359
Query: 370 LTDDIQVSPEDSLKKGISWSRDSPSQLQGSGFSQNSANTKSDGRRSRSGKKAKKRHARQK 429
TDD+ VSP++ KK + ++S SQ Q S SQ S + +S+GRRSRSGKKAKKRH RQK
Sbjct: 360 -TDDVHVSPDNFQKKVSTQMKESSSQHQVSSLSQ-STSARSEGRRSRSGKKAKKRHTRQK 417
Query: 430 SLQKPDDPSALEKESTSHKEDDTAMSGTDQASSRCASPEELRSRKTPIESIQESTSKKLS 489
S QKP+DPSA EKE TS + DDTAMSGTDQA S +S E+ RSRKTPIES+QE T +
Sbjct: 418 SQQKPEDPSAPEKEGTSRR-DDTAMSGTDQALS--SSSEDSRSRKTPIESMQEPTGAQFI 474
Query: 490 RSSKKLSEVSGETLKDGYVVALYARDRPALHISRQRHKGGGWILETMSNVTKRDPAAQFL 549
+S+ +LS E LKDGY++AL+ARDR ALH+SRQR KGGGWI+++MSNV+KRDPAAQFL
Sbjct: 475 KSTVRLSGNCTELLKDGYIIALFARDRSALHVSRQRVKGGGWIMDSMSNVSKRDPAAQFL 534
Query: 550 IC-KSKDTIGLRSFTAGGKLLQINRRMEFVFASHSFDAWESWAIEGPLEECRLVNCRNP 607
I +SKDTIGLRS AGGKLLQINRRMEFVFASHSFD WE+W +EG L+ECRLVNCRNP
Sbjct: 535 IIFRSKDTIGLRSLAAGGKLLQINRRMEFVFASHSFDVWENWTLEGSLQECRLVNCRNP 593
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449432118|ref|XP_004133847.1| PREDICTED: C-terminal binding protein AN-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 905 bits (2338), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/613 (76%), Positives = 523/613 (85%), Gaps = 12/613 (1%)
Query: 8 AAMPHRDNPTPLPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLADGKIEAAAAVLLHS 67
AAM HR+NP PLP VV LNCIEDC LEQD LAGVA+VEHVPL RLADGKIE+A AV+LHS
Sbjct: 315 AAMSHRNNPKPLPLVVTLNCIEDCSLEQDCLAGVAVVEHVPLSRLADGKIESATAVVLHS 374
Query: 68 LAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLL 127
LAYLPRAAQRRL P LILCLGS+DR+VDSALAADLGLRL+HVDTSRAEEIAD+VMAL L
Sbjct: 375 LAYLPRAAQRRLHPCHLILCLGSADRSVDSALAADLGLRLVHVDTSRAEEIADSVMALFL 434
Query: 128 GLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMS 187
GLLRRTHLL+RH LSASGWLGS+QPLCRGMRRCRGLVLGIVGRS+SARALATRSL+FK+S
Sbjct: 435 GLLRRTHLLSRHTLSASGWLGSIQPLCRGMRRCRGLVLGIVGRSSSARALATRSLAFKIS 494
Query: 188 VLYFDVPEGKGKV-----TFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQ 242
VLYFDV +GKGKV TFPSAARRMDTLNDLLAASD+ISLHCA+T++TIQIINAECLQ
Sbjct: 495 VLYFDVNDGKGKVSKSTATFPSAARRMDTLNDLLAASDLISLHCALTNDTIQIINAECLQ 554
Query: 243 HIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPR 302
HIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWV+EMPNVLILP
Sbjct: 555 HIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVKEMPNVLILPH 614
Query: 303 SADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTEGCENEIDDEIEQYNKLDKVSTL 362
SADYSEEVWMEIR+K +S+LQ FF DG+IP+NAISD + + E+++ EQ + L
Sbjct: 615 SADYSEEVWMEIREKCVSILQAFFVDGLIPENAISDEDE-DEEVNEVKEQSDGRGVEGIL 673
Query: 363 EGSVGGQLTDDIQVSPEDSLKKGISWSRDSPSQLQGSGFSQNSANTKSDGRRSRSGKKAK 422
+ +V QLT+D +SPE S KKG++ S +S SQ Q S SQ + T+SDGRRSRSGKKAK
Sbjct: 674 QLAVVEQLTEDNHLSPESSQKKGLNLSPESSSQPQSSSLSQTTV-TRSDGRRSRSGKKAK 732
Query: 423 KRHARQKSLQKPDDPSALEKESTSHKEDDTAMSGTDQ---ASSRCASPEELRSRKTPIES 479
KRH QKS QK DD LEKESTSH+EDDTAMSGTDQ +SSR ASP+E R+RK P+ES
Sbjct: 733 KRHTHQKSQQK-DDSLVLEKESTSHREDDTAMSGTDQVLSSSSRFASPDESRNRKVPMES 791
Query: 480 IQESTSKKLSRSSKKLSEVSGETLKDGYVVALYARDRPALHISRQRHKGGGWILETMSNV 539
+QESTS +S KKL S LKDGYVVA+YARDRPA+H+SRQR KGGGW L+TM++V
Sbjct: 792 MQESTSDPSLKSKKKLGRKSISQLKDGYVVAIYARDRPAVHVSRQRVKGGGWFLDTMTDV 851
Query: 540 TKRDPAAQFLIC-KSKDTIGLRSFTAGGKLLQINRRMEFVFASHSFDAWESWAIEGPLEE 598
TKRDPAAQFL+ ++KDTIGLRS +AGGKLLQINRR EFVFASHSFD WESW +EG LEE
Sbjct: 852 TKRDPAAQFLVVFRNKDTIGLRSLSAGGKLLQINRRTEFVFASHSFDVWESWMLEGSLEE 911
Query: 599 CRLVNCRNPLVFF 611
CRLVNCRNPL
Sbjct: 912 CRLVNCRNPLALL 924
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449527235|ref|XP_004170618.1| PREDICTED: C-terminal binding protein AN-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 902 bits (2331), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/619 (75%), Positives = 524/619 (84%), Gaps = 11/619 (1%)
Query: 1 MMKN-RFPAAMPHRDNPTPLPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLADGKIEA 59
M +N R AAM HR+NP PLP VV LNCIEDC LEQD LAGVA+VEHVPL RLADGKIE+
Sbjct: 1 MSRNLRSSAAMSHRNNPKPLPLVVTLNCIEDCSLEQDCLAGVAVVEHVPLSRLADGKIES 60
Query: 60 AAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIA 119
A AV+LHSLAYLPRAAQRRL P LILCLGS+DR+VDSALAADLGLRL+HVDTSRAEEIA
Sbjct: 61 ATAVVLHSLAYLPRAAQRRLHPCHLILCLGSADRSVDSALAADLGLRLVHVDTSRAEEIA 120
Query: 120 DTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALAT 179
D+VMAL LGLLRRTHLL+RH LSASGWLGS+QPLCRGMRRCRGLVLGIVGRS+SARALAT
Sbjct: 121 DSVMALFLGLLRRTHLLSRHTLSASGWLGSIQPLCRGMRRCRGLVLGIVGRSSSARALAT 180
Query: 180 RSLSFKMSVLYFDVPEG---KGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII 236
RSL+FK+SVLYFDV +G K TFPSAARRMDTLNDLLAASD+ISLHCA+T++TIQII
Sbjct: 181 RSLAFKISVLYFDVNDGKVSKSTATFPSAARRMDTLNDLLAASDLISLHCALTNDTIQII 240
Query: 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPN 296
NAECLQHIKPGAF+VNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWV+EMPN
Sbjct: 241 NAECLQHIKPGAFIVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVKEMPN 300
Query: 297 VLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTEGCENEIDDEIEQYNKL 356
VLILP SADYSEEVWMEIR+K +S+LQ FF DG+IP+NAISD + + E+++ EQ +
Sbjct: 301 VLILPHSADYSEEVWMEIREKCVSILQAFFVDGLIPENAISDEDE-DEEVNEVKEQSDGR 359
Query: 357 DKVSTLEGSVGGQLTDDIQVSPEDSLKKGISWSRDSPSQLQGSGFSQNSANTKSDGRRSR 416
L+ +V QLT+D +SPE S KKG++ S +S SQ Q S SQ + T+SDGRRSR
Sbjct: 360 GVEGILQLAVVEQLTEDNHLSPESSQKKGLNLSPESSSQPQSSSLSQTTV-TRSDGRRSR 418
Query: 417 SGKKAKKRHARQKSLQKPDDPSALEKESTSHKEDDTAMSGTDQ---ASSRCASPEELRSR 473
SGKKAKKRH QKS QK DD LEKESTSH+EDDTAMSGTDQ +SSR ASP+E R+R
Sbjct: 419 SGKKAKKRHTHQKSQQK-DDSLVLEKESTSHREDDTAMSGTDQVLSSSSRFASPDESRNR 477
Query: 474 KTPIESIQESTSKKLSRSSKKLSEVSGETLKDGYVVALYARDRPALHISRQRHKGGGWIL 533
K P+ES+QESTS +S KKL S LKDGYVVA+YARDRPA+H+SRQR KGGGW L
Sbjct: 478 KVPMESMQESTSDPSLKSKKKLGRKSISQLKDGYVVAIYARDRPAVHVSRQRVKGGGWFL 537
Query: 534 ETMSNVTKRDPAAQFLIC-KSKDTIGLRSFTAGGKLLQINRRMEFVFASHSFDAWESWAI 592
+TM++VTKRDPAAQFL+ ++KDTIGLRS +AGGKLLQINRR EFVFASHSFD WESW +
Sbjct: 538 DTMTDVTKRDPAAQFLVVFRNKDTIGLRSLSAGGKLLQINRRTEFVFASHSFDVWESWML 597
Query: 593 EGPLEECRLVNCRNPLVFF 611
EG LEECRLVNCRNPL
Sbjct: 598 EGSLEECRLVNCRNPLALL 616
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356568439|ref|XP_003552418.1| PREDICTED: C-terminal binding protein AN-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 895 bits (2313), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/608 (75%), Positives = 519/608 (85%), Gaps = 14/608 (2%)
Query: 8 AAMPHRDNPTPLPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLADGKIEAAAAVLLHS 67
AAMPHR+NP PLP VV LNC+EDC LE +SLAGVA V+HVPL L+DGKIE+AAAVLLHS
Sbjct: 8 AAMPHRNNPAPLPLVVTLNCVEDCSLEFESLAGVATVQHVPLSCLSDGKIESAAAVLLHS 67
Query: 68 LAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLL 127
LAYLPRAAQRRLRPY LILCLGS+DR VDSALAADLGLRL+HVDTSRAEEIAD+VMAL L
Sbjct: 68 LAYLPRAAQRRLRPYHLILCLGSADRAVDSALAADLGLRLVHVDTSRAEEIADSVMALFL 127
Query: 128 GLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMS 187
GLLRRTHLL+RH LSASGWLGSVQPLCRGMRRCRGLVLGIVG SASAR+LATRSL+FKMS
Sbjct: 128 GLLRRTHLLSRHPLSASGWLGSVQPLCRGMRRCRGLVLGIVGISASARSLATRSLAFKMS 187
Query: 188 VLYFD---VPEGKG----KVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240
VLYFD VP KV FP AARRMDTLNDLLAASD+ISLHCA+T+ET+QIINAEC
Sbjct: 188 VLYFDARAVPSIYSSSIRKVKFPPAARRMDTLNDLLAASDLISLHCALTNETMQIINAEC 247
Query: 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLIL 300
LQH+KPGAF+VNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWV+EMPNVLIL
Sbjct: 248 LQHVKPGAFIVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVKEMPNVLIL 307
Query: 301 PRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTEGCENEIDDEIEQYNKLDKVS 360
P+SADYSEEVWMEIR+KAIS+LQTFF DG+IPKNAISD E E+E+D+E E ++ +
Sbjct: 308 PQSADYSEEVWMEIREKAISILQTFFIDGIIPKNAISDVEE-ESEVDNESELSDQQYNEN 366
Query: 361 TLEGSVGGQLTDDIQVSPEDSLKKGISWSRDSPSQLQGSGFSQNSANTKSDGRRSRSGKK 420
L+ V Q TDD+ VSP++ KK + ++S SQ Q S SQ S + +S+GRRSRSGKK
Sbjct: 367 ALQIIVREQ-TDDVHVSPDNFQKKVSTQMKESSSQHQVSSLSQ-STSARSEGRRSRSGKK 424
Query: 421 AKKRHARQKSLQKPDDPSALEKESTSHKEDDTAMSGTDQASSRCASPEELRSRKTPIESI 480
AKKRH RQKS QKP+DPSA EKE TS + DDTAMSGTDQA S +S E+ RSRKTPIES+
Sbjct: 425 AKKRHTRQKSQQKPEDPSAPEKEGTSRR-DDTAMSGTDQALS--SSSEDSRSRKTPIESM 481
Query: 481 QESTSKKLSRSSKKLSEVSGETLKDGYVVALYARDRPALHISRQRHKGGGWILETMSNVT 540
QE T + +S+ +LS E LKDGY++AL+ARDR ALH+SRQR KGGGWI+++MSNV+
Sbjct: 482 QEPTGAQFIKSTVRLSGNCTELLKDGYIIALFARDRSALHVSRQRVKGGGWIMDSMSNVS 541
Query: 541 KRDPAAQFLIC-KSKDTIGLRSFTAGGKLLQINRRMEFVFASHSFDAWESWAIEGPLEEC 599
KRDPAAQFLI +SKDTIGLRS AGGKLLQINRRMEFVFASHSFD WE+W +EG L+EC
Sbjct: 542 KRDPAAQFLIIFRSKDTIGLRSLAAGGKLLQINRRMEFVFASHSFDVWENWTLEGSLQEC 601
Query: 600 RLVNCRNP 607
RLVNCRNP
Sbjct: 602 RLVNCRNP 609
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 620 | ||||||
| TAIR|locus:2025376 | 636 | AN "ANGUSTIFOLIA" [Arabidopsis | 0.969 | 0.944 | 0.641 | 4.8e-197 | |
| UNIPROTKB|J9NTH6 | 369 | CTBP1 "Uncharacterized protein | 0.524 | 0.880 | 0.280 | 1.4e-26 | |
| ZFIN|ZDB-GENE-010130-1 | 449 | ctbp1 "C-terminal binding prot | 0.508 | 0.701 | 0.297 | 2.4e-26 | |
| UNIPROTKB|E1C7L0 | 433 | CTBP2 "Uncharacterized protein | 0.532 | 0.762 | 0.264 | 9.6e-26 | |
| UNIPROTKB|F1MYP4 | 419 | CTBP1 "Uncharacterized protein | 0.520 | 0.770 | 0.276 | 1.1e-25 | |
| UNIPROTKB|Q5ZMM8 | 440 | LOC416354 "Uncharacterized pro | 0.511 | 0.720 | 0.283 | 1.4e-25 | |
| UNIPROTKB|Q9W758 | 437 | ctbp2 "C-terminal-binding prot | 0.514 | 0.729 | 0.275 | 1.7e-25 | |
| UNIPROTKB|F1P620 | 430 | CTBP1 "Uncharacterized protein | 0.524 | 0.755 | 0.280 | 2.2e-25 | |
| RGD|2441 | 430 | Ctbp1 "C-terminal binding prot | 0.524 | 0.755 | 0.277 | 2.2e-25 | |
| UNIPROTKB|Q9Z2F5 | 430 | Ctbp1 "C-terminal-binding prot | 0.524 | 0.755 | 0.277 | 2.2e-25 |
| TAIR|locus:2025376 AN "ANGUSTIFOLIA" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1908 (676.7 bits), Expect = 4.8e-197, P = 4.8e-197
Identities = 395/616 (64%), Positives = 453/616 (73%)
Query: 1 MMKNRFPAAMPHRDNPTPL-PSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLADGKIEA 59
M K R A MPHRD P+P P VV LNCIEDC LEQDSLAGVA VE+VPL R+ADGKIE+
Sbjct: 1 MSKIRSSATMPHRDQPSPASPHVVTLNCIEDCALEQDSLAGVAGVEYVPLSRIADGKIES 60
Query: 60 AAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIA 119
A AVLLHSLAYLPRAAQRRLRP+QLILCLGS+DR VDS LAADLGLRL+HVDTSRAEEIA
Sbjct: 61 ATAVLLHSLAYLPRAAQRRLRPHQLILCLGSADRAVDSTLAADLGLRLVHVDTSRAEEIA 120
Query: 120 DTVMXXXXXXXXXXXXXXXXXXXXXXWLGSVQPLCRGMRRCRGLVLGIVGXXXXXXXXXX 179
DTVM WLGS+QPLCRGMRRCRG+VLGIVG
Sbjct: 121 DTVMALILGLLRRTHLLSRHALSASGWLGSLQPLCRGMRRCRGMVLGIVGRSVSARYLAS 180
Query: 180 XXXXFKMSVLYFDVPEG-KGKVT---FPSAARRMDTLNDLLAASDVISLHCAVTDETIQI 235
FKMSVLYFDVPEG + ++ FP AARRMDTLNDLLAASDVISLHCA+T++T+QI
Sbjct: 181 RSLAFKMSVLYFDVPEGDEERIRPSRFPRAARRMDTLNDLLAASDVISLHCALTNDTVQI 240
Query: 236 INAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMP 295
+NAECLQHIKPGAFLVNTGS QLLDDCAVKQLLIDGT+AGCALDGAEGPQWMEAWV+EMP
Sbjct: 241 LNAECLQHIKPGAFLVNTGSCQLLDDCAVKQLLIDGTIAGCALDGAEGPQWMEAWVKEMP 300
Query: 296 NVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTEGCENEIDDEIEQY-N 354
NVLILPRSADYSEEVWMEIR+KAIS+L +FF DGVIP N +SD E E+E +E EQ +
Sbjct: 301 NVLILPRSADYSEEVWMEIREKAISILHSFFLDGVIPSNTVSDEEVEESEASEEEEQSPS 360
Query: 355 KLDKVSTLEGSVGGQLTDDIQVSPEDSLKKGISWSRDSPSQLQGSGFSQNSANTXXXXXX 414
K +K++ +E S Q + S E +++ S ++S S Q SQN+A
Sbjct: 361 KHEKLAIVE-STSRQQGESTLTSTE-IVRREASELKESLSPGQ-QHVSQNTA-VKPEGRR 416
Query: 415 XXXXXXXXXXXXXQKSLQKPDDPSALEKESTSHKEDDTAMSGTDQ---ASSRCASPEELR 471
QK +QK D S L +ESTS + DD AMS T++ +SSRCASPE+ R
Sbjct: 417 SRSGKKAKKRHSQQKYMQKTDGSSGLNEESTSRR-DDIAMSDTEEVLSSSSRCASPEDSR 475
Query: 472 SRKTPIESIQEXXXXXXXXXXXXXXEVSGETLKDGYVVALYARDRPALHISRQRHKGGGW 531
SRKTP+E +QE S E LKDGYVVALYA+D LH+SRQR K GGW
Sbjct: 476 SRKTPLEVMQESSPNQLVMSSKKFIGKSSELLKDGYVVALYAKDLSGLHVSRQRTKNGGW 535
Query: 532 ILETMSNVTKRDPAAQFLIC-KSKDTIGLRSFTAGGKLLQINRRMEFVFASHSFDAWESW 590
L+T+SNV+KRDPAAQF+I ++KDT+GLRSF AGGKLLQINRRMEFVFASHSFD WESW
Sbjct: 536 FLDTLSNVSKRDPAAQFIIAYRNKDTVGLRSFAAGGKLLQINRRMEFVFASHSFDVWESW 595
Query: 591 AIEGPLEECRLVNCRN 606
++EG L+ECRLVNCRN
Sbjct: 596 SLEGSLDECRLVNCRN 611
|
|
| UNIPROTKB|J9NTH6 CTBP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 305 (112.4 bits), Expect = 1.4e-26, P = 1.4e-26
Identities = 96/342 (28%), Positives = 157/342 (45%)
Query: 7 PAAMPHRDNPTPLPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLAD--GKI--EAAAA 62
P M +P PL VAL DC +E L VA V + K+ EA A
Sbjct: 6 PPIMNGPMHPRPL---VALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGA 62
Query: 63 VLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTV 122
++ H++ L R + + ++I+ +GS +D A DLG+ + +V + EE AD+
Sbjct: 63 LMYHTIT-LTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADST 121
Query: 123 MXXXXXXXXXXX--XXXXXXXXXXXWLGSVQPLCRGMRRCRGLVLGIVGXXXXXXXXXXX 180
M + ++ + G R RG LGI+G
Sbjct: 122 MCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALR 181
Query: 181 XXXFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240
F +VL++D P +R+ TL DLL SD ++LHC + + +IN
Sbjct: 182 AKAFGFNVLFYD-PYLSDGTERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFT 240
Query: 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-P-QWMEAWVREMPNVL 298
++ ++ GAFLVNT L+D+ A+ Q L +G + G ALD E P + + +++ PN++
Sbjct: 241 VKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLI 300
Query: 299 ILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIP---KNAIS 337
P +A YSE+ +E+R++A ++ G IP KN ++
Sbjct: 301 CTPHAAWYSEQASIEMREEAAREIRRAI-TGRIPDSLKNCVN 341
|
|
| ZFIN|ZDB-GENE-010130-1 ctbp1 "C-terminal binding protein 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 315 (115.9 bits), Expect = 2.4e-26, P = 2.4e-26
Identities = 100/336 (29%), Positives = 160/336 (47%)
Query: 15 NPTPLPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLAD--GKI--EAAAAVLLHSLAY 70
+P PL VAL DC +E L VA V + K+ EA AA+L H++
Sbjct: 31 HPRPL---VALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVAALLYHTIT- 86
Query: 71 LPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMXXXXXXX 130
L R + + ++I+ +GS VD AA+LG+ + +V + EE ADT M
Sbjct: 87 LSRDDLDKFKGLRVIVRIGSGFDNVDIKAAAELGIAVCNVPAASVEETADTAMCLILNLY 146
Query: 131 XXXX--XXXXXXXXXXXWLGSVQPLCRGMRRCRGLVLGIVGXXXXXXXXXXXXXXFKMSV 188
+ ++ + G R RG LGI+G F V
Sbjct: 147 RRVTWMHQALREGTRASSVEQIREVAGGAARIRGETLGIIGLGRVGQAVALRAKAFGFGV 206
Query: 189 LYFD--VPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKP 246
+++D +P+G V +RM TL DLL SD +SLHC++ + +IN ++ ++
Sbjct: 207 IFYDPYLPDG---VERSLGLQRMATLQDLLMHSDCVSLHCSLNEHNHHLINDFTIKQMRQ 263
Query: 247 GAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-P-QWMEAWVREMPNVLILPRSA 304
GAFLVNT L+D+ A+ Q L +G + G ALD E P + + +++ PN++ P ++
Sbjct: 264 GAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHETEPFSFSQGPLKDAPNLICTPHTS 323
Query: 305 DYSEEVWMEIRDKAISVLQTFFFDGVIP---KNAIS 337
YSE+ +E R++A ++ G IP KN ++
Sbjct: 324 WYSEQASIEAREEAAREVRRAI-TGRIPDSLKNCVN 358
|
|
| UNIPROTKB|E1C7L0 CTBP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 308 (113.5 bits), Expect = 9.6e-26, P = 9.6e-26
Identities = 91/344 (26%), Positives = 162/344 (47%)
Query: 1 MMKNRFPAAMPHRDN-PT-PLPSVVALNCIEDCVLEQD---SLAGVALVEHVPLGRLADG 55
M + FP P N P P P V L+ DC +E LA VA + + +
Sbjct: 1 MWRQHFPGIRPQIMNGPMHPRPLVALLDG-RDCTVEMPILKDLATVAFCDAQSTQEIHEK 59
Query: 56 KI-EAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSR 114
+ EA A++ H++ L R + + ++I+ +GS +D A +LG+ + ++ ++
Sbjct: 60 VLNEAVGAMMYHTIT-LTREDLEKFKALRVIVRIGSGYDNIDIKAAGELGIAVCNIPSAA 118
Query: 115 AEEIADTVMXXXXXXXXXXX--XXXXXXXXXXXWLGSVQPLCRGMRRCRGLVLGIVGXXX 172
EE AD+ + + ++ + G R RG LG++G
Sbjct: 119 VEETADSTVCHVLNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGR 178
Query: 173 XXXXXXXXXXXFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDET 232
F +V+++D P + + +R+ TL DLL SD +SLHC + +
Sbjct: 179 TAQAVAVRAKAFGFNVIFYD-PYLQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHN 237
Query: 233 IQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-P-QWMEAW 290
+IN ++ ++ GAFLVNT L+D+ A+ Q L +G + G ALD E P + +
Sbjct: 238 HHLINDFTIKQMRQGAFLVNTARGGLVDEKALTQALKEGRIRGAALDVHESEPFSFAQGP 297
Query: 291 VREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKN 334
+++ PN++ P +A YSE+ +E+R+ A + ++ G IP++
Sbjct: 298 LKDAPNLICTPHTAWYSEQASLEMREAAATEIRRAI-TGRIPES 340
|
|
| UNIPROTKB|F1MYP4 CTBP1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 304 (112.1 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 95/344 (27%), Positives = 160/344 (46%)
Query: 7 PAAMPHRDNPTPLPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLAD--GKI--EAAAA 62
P M +P PL VAL DC +E L VA V + K+ EA A
Sbjct: 6 PPIMNGPMHPRPL---VALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGA 62
Query: 63 VLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTV 122
++ H++ L R + + ++I+ +GS +D A DLG+ + +V + EE AD+
Sbjct: 63 LMYHTIT-LTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADST 121
Query: 123 MXXXXXXXXXXX--XXXXXXXXXXXWLGSVQPLCRGMRRCRGLVLGIVGXXXXXXXXXXX 180
M + ++ + G R RG LG++G
Sbjct: 122 MCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGVIGLGRVGQAVALR 181
Query: 181 XXXFKMSVLYFD--VPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238
F +VL++D + +G + +R+ TL DLL SD ++LHC + + +IN
Sbjct: 182 AKAFGFNVLFYDPYLADGTERAL---GLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLIND 238
Query: 239 ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-P-QWMEAWVREMPN 296
++ ++ GAFLVNT L+D+ A+ Q L +G + G ALD E P + + +++ PN
Sbjct: 239 FTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPN 298
Query: 297 VLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIP---KNAIS 337
++ P +A YSE+ +E+R++A ++ G IP KN ++
Sbjct: 299 LICTPHAAWYSEQASIEMREEAAREIRRAI-TGRIPDSLKNCVN 341
|
|
| UNIPROTKB|Q5ZMM8 LOC416354 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 308 (113.5 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 94/332 (28%), Positives = 156/332 (46%)
Query: 11 PHRDNPTPLPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLAD--GKI--EAAAAVLLH 66
P + P P +VAL DC +E L VA V + K+ EA A++ H
Sbjct: 21 PAVNGPMPSRPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYH 80
Query: 67 SLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMXXX 126
++ L R + + ++I+ +GS VD AA+LG+ + ++ +S EE AD+ +
Sbjct: 81 TIT-LSRQDLEKFKALRVIVRIGSGYDNVDIKSAAELGIAVCNIPSSSVEETADSTLCHI 139
Query: 127 XXXXXXXX--XXXXXXXXXXXWLGSVQPLCRGMRRCRGLVLGIVGXXXXXXXXXXXXXXF 184
+ ++ + G R RG LGI+G F
Sbjct: 140 LNLYRRVTWLHQAMREGNRASSVEQIREVAGGAVRIRGETLGIIGLGRVGQAVALRAKSF 199
Query: 185 KMSVLYFD--VPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQ 242
+V+++D +P+G V +R+ TL DLL SD I+LHC++ + +IN ++
Sbjct: 200 GFNVIFYDPYLPDG---VERSLGLQRVGTLQDLLMHSDCITLHCSLNEHNHHLINDFTIK 256
Query: 243 HIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-P-QWMEAWVREMPNVLIL 300
++ G FLVNT L+D+ A+ Q L +G + G ALD E P + + +++ PNV+
Sbjct: 257 QMRQGCFLVNTARGGLVDEKALAQALKEGRIRGTALDVHESEPFSFAQGPLKDAPNVICT 316
Query: 301 PRSADYSEEVWMEIRDKAISVLQTFFFDGVIP 332
P +A YSE+ +E R+ A ++ G IP
Sbjct: 317 PHTAWYSEQASIESREDAAKEIRRAI-TGHIP 347
|
|
| UNIPROTKB|Q9W758 ctbp2 "C-terminal-binding protein 2" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 307 (113.1 bits), Expect = 1.7e-25, P = 1.7e-25
Identities = 91/330 (27%), Positives = 153/330 (46%)
Query: 11 PHRDNPTPLPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLAD--GKI--EAAAAVLLH 66
P + P P+ +VAL DC +E L VA V + K+ EA A++ H
Sbjct: 21 PILNGPMPVRPLVALLDGRDCTIEMPILKDVATVAFCDAQSTQEIHEKVLSEAVGALMYH 80
Query: 67 SLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMXXX 126
++ L R + + ++I+ +GS +D AA+LG+ + ++ ++ EE AD+ +
Sbjct: 81 TIT-LSREDLEKFKALRIIIKIGSGYDNIDIKSAAELGIAVCNIPSASVEETADSTLCHI 139
Query: 127 XXXXXXXXXXXXXXXXXX--XWLGSVQPLCRGMRRCRGLVLGIVGXXXXXXXXXXXXXXF 184
+ ++ + G R RG LGI+G F
Sbjct: 140 LNLYRRVTWLHQAMREGNRPASVEQIREVAGGAARIRGETLGIIGLGRIGQAVALRAKAF 199
Query: 185 KMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHI 244
+V+++D G V +RM TL +LL SD I+LHC + + +IN ++ +
Sbjct: 200 NFTVIFYDPYLADG-VERSLGLQRMATLQELLMHSDCITLHCNLNEHNHHLINDFTIKQM 258
Query: 245 KPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-P-QWMEAWVREMPNVLILPR 302
+ G FLVNT L+D+ A+ Q L DG + G ALD E P + + +++ PN++ P
Sbjct: 259 RQGCFLVNTARGGLVDEKALAQALKDGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPH 318
Query: 303 SADYSEEVWMEIRDKAISVLQTFFFDGVIP 332
+A YSE +E R++A ++ G IP
Sbjct: 319 TAWYSEHASIEAREEAAKEIRRAIA-GPIP 347
|
|
| UNIPROTKB|F1P620 CTBP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 305 (112.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 96/342 (28%), Positives = 157/342 (45%)
Query: 7 PAAMPHRDNPTPLPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLAD--GKI--EAAAA 62
P M +P PL VAL DC +E L VA V + K+ EA A
Sbjct: 6 PPIMNGPMHPRPL---VALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGA 62
Query: 63 VLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTV 122
++ H++ L R + + ++I+ +GS +D A DLG+ + +V + EE AD+
Sbjct: 63 LMYHTIT-LTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADST 121
Query: 123 MXXXXXXXXXXX--XXXXXXXXXXXWLGSVQPLCRGMRRCRGLVLGIVGXXXXXXXXXXX 180
M + ++ + G R RG LGI+G
Sbjct: 122 MCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALR 181
Query: 181 XXXFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240
F +VL++D P +R+ TL DLL SD ++LHC + + +IN
Sbjct: 182 AKAFGFNVLFYD-PYLSDGTERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFT 240
Query: 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-P-QWMEAWVREMPNVL 298
++ ++ GAFLVNT L+D+ A+ Q L +G + G ALD E P + + +++ PN++
Sbjct: 241 VKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLI 300
Query: 299 ILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIP---KNAIS 337
P +A YSE+ +E+R++A ++ G IP KN ++
Sbjct: 301 CTPHAAWYSEQASIEMREEAAREIRRAI-TGRIPDSLKNCVN 341
|
|
| RGD|2441 Ctbp1 "C-terminal binding protein 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 305 (112.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 95/342 (27%), Positives = 158/342 (46%)
Query: 7 PAAMPHRDNPTPLPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLAD--GKI--EAAAA 62
P M +P PL VAL DC +E L VA V + K+ EA A
Sbjct: 6 PPIMNGPMHPRPL---VALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGA 62
Query: 63 VLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTV 122
++ H++ L R + + ++I+ +GS +D A DLG+ + +V + EE AD+
Sbjct: 63 LMYHTIT-LTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADST 121
Query: 123 MXXXXXXXXXXX--XXXXXXXXXXXWLGSVQPLCRGMRRCRGLVLGIVGXXXXXXXXXXX 180
+ + ++ + G R RG LGI+G
Sbjct: 122 LCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALR 181
Query: 181 XXXFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240
F +VL++D P + +R+ TL DLL SD ++LHC + + +IN
Sbjct: 182 AKAFGFNVLFYD-PYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFT 240
Query: 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-P-QWMEAWVREMPNVL 298
++ ++ GAFLVNT L+D+ A+ Q L +G + G ALD E P + + +++ PN++
Sbjct: 241 VKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLI 300
Query: 299 ILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIP---KNAIS 337
P +A YSE+ +E+R++A ++ G IP KN ++
Sbjct: 301 CTPHAAWYSEQASIEMREEAAREIRRAI-TGRIPDSLKNCVN 341
|
|
| UNIPROTKB|Q9Z2F5 Ctbp1 "C-terminal-binding protein 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 305 (112.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 95/342 (27%), Positives = 158/342 (46%)
Query: 7 PAAMPHRDNPTPLPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLAD--GKI--EAAAA 62
P M +P PL VAL DC +E L VA V + K+ EA A
Sbjct: 6 PPIMNGPMHPRPL---VALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGA 62
Query: 63 VLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTV 122
++ H++ L R + + ++I+ +GS +D A DLG+ + +V + EE AD+
Sbjct: 63 LMYHTIT-LTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADST 121
Query: 123 MXXXXXXXXXXX--XXXXXXXXXXXWLGSVQPLCRGMRRCRGLVLGIVGXXXXXXXXXXX 180
+ + ++ + G R RG LGI+G
Sbjct: 122 LCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALR 181
Query: 181 XXXFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240
F +VL++D P + +R+ TL DLL SD ++LHC + + +IN
Sbjct: 182 AKAFGFNVLFYD-PYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFT 240
Query: 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-P-QWMEAWVREMPNVL 298
++ ++ GAFLVNT L+D+ A+ Q L +G + G ALD E P + + +++ PN++
Sbjct: 241 VKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLI 300
Query: 299 ILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIP---KNAIS 337
P +A YSE+ +E+R++A ++ G IP KN ++
Sbjct: 301 CTPHAAWYSEQASIEMREEAAREIRRAI-TGRIPDSLKNCVN 341
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| O23702 | CTBP_ARATH | No assigned EC number | 0.7117 | 0.9612 | 0.9371 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| eugene3.00140349 | hypothetical protein (655 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 620 | |||
| cd05299 | 312 | cd05299, CtBP_dh, C-terminal binding protein (CtBP | 1e-85 | |
| COG1052 | 324 | COG1052, LdhA, Lactate dehydrogenase and related d | 6e-38 | |
| cd05198 | 302 | cd05198, formate_dh_like, Formate/glycerate and re | 8e-38 | |
| COG0111 | 324 | COG0111, SerA, Phosphoglycerate dehydrogenase and | 3e-34 | |
| cd12175 | 311 | cd12175, 2-Hacid_dh_11, Putative D-isomer specific | 5e-33 | |
| cd12172 | 306 | cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat | 2e-31 | |
| pfam02826 | 175 | pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro | 3e-31 | |
| cd12168 | 321 | cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l | 8e-31 | |
| cd12171 | 310 | cd12171, 2-Hacid_dh_10, Putative D-isomer specific | 5e-28 | |
| cd01619 | 323 | cd01619, LDH_like, D-Lactate and related Dehydroge | 2e-27 | |
| cd05301 | 309 | cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr | 1e-26 | |
| cd12178 | 317 | cd12178, 2-Hacid_dh_13, Putative D-isomer specific | 3e-25 | |
| cd12173 | 304 | cd12173, PGDH_4, Phosphoglycerate dehydrogenases, | 3e-24 | |
| cd12156 | 301 | cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, | 7e-24 | |
| cd12162 | 307 | cd12162, 2-Hacid_dh_4, Putative D-isomer specific | 1e-23 | |
| PRK06932 | 314 | PRK06932, PRK06932, glycerate dehydrogenase; Provi | 4e-23 | |
| cd12187 | 329 | cd12187, LDH_like_1, D-Lactate and related Dehydro | 6e-23 | |
| PRK06487 | 317 | PRK06487, PRK06487, glycerate dehydrogenase; Provi | 2e-21 | |
| cd12183 | 328 | cd12183, LDH_like_2, D-Lactate and related Dehydro | 2e-21 | |
| cd12157 | 318 | cd12157, PTDH, Thermostable Phosphite Dehydrogenas | 3e-21 | |
| cd05303 | 301 | cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P | 3e-21 | |
| cd12176 | 304 | cd12176, PGDH_3, Phosphoglycerate dehydrogenases, | 2e-20 | |
| cd12167 | 330 | cd12167, 2-Hacid_dh_8, Putative D-isomer specific | 4e-20 | |
| cd12186 | 329 | cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydr | 6e-20 | |
| cd12185 | 322 | cd12185, HGDH_LDH_like, Putative Lactate dehydroge | 7e-20 | |
| cd05300 | 313 | cd05300, 2-Hacid_dh_1, Putative D-isomer specific | 1e-19 | |
| cd12174 | 305 | cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat | 2e-19 | |
| pfam00389 | 312 | pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxy | 6e-19 | |
| cd12169 | 308 | cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat | 8e-19 | |
| cd12177 | 321 | cd12177, 2-Hacid_dh_12, Putative D-isomer specific | 3e-18 | |
| PRK15409 | 323 | PRK15409, PRK15409, bifunctional glyoxylate/hydrox | 6e-18 | |
| PRK11790 | 409 | PRK11790, PRK11790, D-3-phosphoglycerate dehydroge | 1e-16 | |
| cd12180 | 308 | cd12180, 2-Hacid_dh_15, Putative D-isomer specific | 1e-16 | |
| cd12165 | 314 | cd12165, 2-Hacid_dh_6, Putative D-isomer specific | 2e-16 | |
| cd05302 | 348 | cd05302, FDH, NAD-dependent Formate Dehydrogenase | 4e-16 | |
| PRK13243 | 333 | PRK13243, PRK13243, glyoxylate reductase; Reviewed | 2e-15 | |
| TIGR01327 | 525 | TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas | 4e-15 | |
| cd12161 | 315 | cd12161, GDH_like_1, Putative glycerate dehydrogen | 1e-14 | |
| cd12159 | 303 | cd12159, 2-Hacid_dh_2, Putative D-isomer specific | 3e-14 | |
| PLN02306 | 386 | PLN02306, PLN02306, hydroxypyruvate reductase | 1e-13 | |
| cd12179 | 306 | cd12179, 2-Hacid_dh_14, Putative D-isomer specific | 1e-13 | |
| PRK13581 | 526 | PRK13581, PRK13581, D-3-phosphoglycerate dehydroge | 6e-13 | |
| PRK07574 | 385 | PRK07574, PRK07574, formate dehydrogenase; Provisi | 1e-12 | |
| cd12184 | 330 | cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydro | 3e-12 | |
| PRK08410 | 311 | PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; P | 8e-12 | |
| PLN02928 | 347 | PLN02928, PLN02928, oxidoreductase family protein | 4e-11 | |
| cd12158 | 343 | cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Deh | 2e-10 | |
| cd12164 | 306 | cd12164, GDH_like_2, Putative glycerate dehydrogen | 6e-10 | |
| cd12160 | 310 | cd12160, 2-Hacid_dh_3, Putative D-isomer specific | 6e-10 | |
| PLN03139 | 386 | PLN03139, PLN03139, formate dehydrogenase; Provisi | 2e-09 | |
| cd12155 | 314 | cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2 | 1e-08 | |
| PRK12480 | 330 | PRK12480, PRK12480, D-lactate dehydrogenase; Provi | 5e-08 | |
| PRK08605 | 332 | PRK08605, PRK08605, D-lactate dehydrogenase; Valid | 2e-05 | |
| cd12170 | 294 | cd12170, 2-Hacid_dh_9, Putative D-isomer specific | 2e-05 | |
| PRK00257 | 381 | PRK00257, PRK00257, erythronate-4-phosphate dehydr | 3e-05 | |
| cd12166 | 300 | cd12166, 2-Hacid_dh_7, Putative D-isomer specific | 5e-05 | |
| cd12154 | 310 | cd12154, FDH_GDH_like, Formate/glycerate dehydroge | 0.003 |
| >gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor | Back alignment and domain information |
|---|
Score = 269 bits (691), Expect = 1e-85
Identities = 112/325 (34%), Positives = 162/325 (49%), Gaps = 23/325 (7%)
Query: 20 PSVVALNCIE-DCVLEQDSL--AGVALVEHVPLGRLADGKIEA--AAAVLLHSLAYLPRA 74
P VV + D +E++ L AGV LV+ + A A A+L+ A +
Sbjct: 1 PKVVITDYDFPDLDIEREVLEEAGVELVD-AQSRTEDELIEAAADADALLVQY-APVTAE 58
Query: 75 AQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTH 134
L ++I+ G VD A A + G+ + +V EE+AD +AL+L L R+
Sbjct: 59 VIEALPRLKVIVRYGVGVDNVDVAAATERGIPVCNVPDYCTEEVADHALALILALARKLP 118
Query: 135 LLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFD-- 192
L R + +RR RGL LG+VG RA+A R+ +F V+ +D
Sbjct: 119 FLDRAVRAGGWDWTV----GGPIRRLRGLTLGLVGFGRIGRAVAKRAKAFGFRVIAYDPY 174
Query: 193 VPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVN 252
VP+G R+ +L++LLA SDV+SLHC +T ET +I+AE L +KPGAFLVN
Sbjct: 175 VPDGV----AALGGVRVVSLDELLARSDVVSLHCPLTPETRHLIDAEALALMKPGAFLVN 230
Query: 253 TGSSQLLDDCAVKQLLIDGTLAGCALDGA--EGPQWMEAWVREMPNVLILPRSADYSEEV 310
T L+D+ A+ + L G +AG ALD E P PNV++ P +A YSEE
Sbjct: 231 TARGGLVDEAALARALKSGRIAGAALDVLEEEPPPADSPL-LSAPNVILTPHAAWYSEES 289
Query: 311 WMEIRDKAIS-VLQTFFFDGVIPKN 334
E+R KA V++ G P+N
Sbjct: 290 LAELRRKAAEEVVR--VLRGEPPRN 312
|
The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312 |
| >gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 6e-38
Identities = 89/249 (35%), Positives = 124/249 (49%), Gaps = 12/249 (4%)
Query: 94 TVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSA--SGWLGSVQ 151
VD A + G+ + +V E +A+ +AL+L L RR H R S G
Sbjct: 79 NVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDP 138
Query: 152 PLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDT 211
L RG LGI+G +A+A R F M VLY+D + AR +D
Sbjct: 139 LL---GFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYD-RSPNPEAEKELGARYVD- 193
Query: 212 LNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDG 271
L++LLA SD+ISLHC +T ET +INAE L +KPGA LVNT L+D+ A+ L G
Sbjct: 194 LDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSG 253
Query: 272 TLAGCALD--GAEGPQWMEAWVR--EMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFF 327
+AG LD E + +R PNV++ P A +EE + + A+ L+ FF
Sbjct: 254 KIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAELALENLEA-FF 312
Query: 328 DGVIPKNAI 336
DG +P N +
Sbjct: 313 DGGVPPNEV 321
|
Length = 324 |
| >gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family | Back alignment and domain information |
|---|
Score = 141 bits (359), Expect = 8e-38
Identities = 83/243 (34%), Positives = 121/243 (49%), Gaps = 7/243 (2%)
Query: 84 LILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSA 143
I G+ +D A G+ + +V + AE +A+ + LLL LLRR
Sbjct: 66 FIQVAGAGVDNIDLDAAKKRGITVTNVPGANAEAVAEHALGLLLALLRRLPRADAAVRRG 125
Query: 144 SGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP 203
GWL + P G +GIVG + +A R +F M VLY+D K +
Sbjct: 126 WGWLWAGFPG----YELEGKTVGIVGLGRIGQRVAKRLQAFGMKVLYYD-RTRKPEPEED 180
Query: 204 SAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCA 263
R +L++LLA SDV+ LH +T ET +IN E L +KPGA LVNT L+D+ A
Sbjct: 181 LGFRV-VSLDELLAQSDVVVLHLPLTPETRHLINEEELALMKPGAVLVNTARGGLVDEDA 239
Query: 264 VKQLLIDGTLAGCALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVL 322
+ + L G +AG ALD E P + + E+PNV++ P A Y+EE + + A+ L
Sbjct: 240 LLRALKSGKIAGAALDVFEPEPLPADHPLLELPNVILTPHIAGYTEEARERMAEIAVENL 299
Query: 323 QTF 325
+ F
Sbjct: 300 ERF 302
|
Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302 |
| >gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 3e-34
Identities = 77/289 (26%), Positives = 127/289 (43%), Gaps = 11/289 (3%)
Query: 29 EDCVLEQDSLAGVALVEHVPLGRLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCL 88
D + E + V + + L + A A L+ S+ + + I
Sbjct: 14 PDALEELLAAYDVEVPDGPDLDEEELLEALADADALIVSVTPVTEEVLAAAPNLKAIGRA 73
Query: 89 GSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLG 148
G+ +D A G+ +++ A +A+ V+ALLL L RR A + W
Sbjct: 74 GAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARR-IPDADASQRRGEW-- 130
Query: 149 SVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR 208
G +GI+G RA+A R +F M V+ +D P +
Sbjct: 131 --DRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYD-PYSPRERAGVDGVVG 187
Query: 209 MDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLL 268
+D+L++LLA +D+++LH +T ET +INAE L +KPGA L+N ++D+ A+ L
Sbjct: 188 VDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAAL 247
Query: 269 IDGTLAGCALDGAEG---PQWMEAWVREMPNVLILPRSADYSEEVWMEI 314
G +AG ALD E P W ++PNV++ P ++E +
Sbjct: 248 DSGKIAGAALDVFEEEPLPADSPLW--DLPNVILTPHIGGSTDEAQERV 294
|
Length = 324 |
| >gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 5e-33
Identities = 88/271 (32%), Positives = 125/271 (46%), Gaps = 27/271 (9%)
Query: 61 AAVLLHSLAYLPR----AAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAE 116
A VL+ + + AA RLR LI G VD A G+ + ++ AE
Sbjct: 44 ADVLVPGMRKVIDAELLAAAPRLR---LIQQPGVGLDGVDLEAATARGIPVANIPGGNAE 100
Query: 117 EIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARA 176
+A+ + L+L LLRR R + G G +P R R G +GIVG RA
Sbjct: 101 SVAEHAVMLMLALLRRLPEADRELRA--GRWG--RPEGRPSRELSGKTVGIVGLGNIGRA 156
Query: 177 LATRSLSFKMSVLYFDV---PEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI 233
+A R F + V+Y+D PE + K R L++LLA SDV+SLH +T ET
Sbjct: 157 VARRLRGFGVEVIYYDRFRDPEAEEKDLGV----RYVELDELLAESDVVSLHVPLTPETR 212
Query: 234 QIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAW--- 290
+I AE L +KPGA L+NT L+D+ A+ L G LAG LD W E
Sbjct: 213 HLIGAEELAAMKPGAILINTARGGLVDEEALLAALRSGHLAGAGLDVF----WQEPLPPD 268
Query: 291 --VREMPNVLILPRSADYSEEVWMEIRDKAI 319
+ + NV++ P A ++E + +
Sbjct: 269 DPLLRLDNVILTPHIAGVTDESYQRMAAIVA 299
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311 |
| >gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 2e-31
Identities = 65/205 (31%), Positives = 95/205 (46%), Gaps = 28/205 (13%)
Query: 115 AEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASA 174
+ +A+ + L+L L R+ R + A GW V G LGI+G
Sbjct: 102 SNSVAELTIGLMLALARQIPQADR-EVRAGGWDRPV------GTELYGKTLGIIGLGRIG 154
Query: 175 RALATRSLSFKMSVLYFDV---PEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDE 231
+A+A R F M VL +D E + +L +LL SD ISLH +T E
Sbjct: 155 KAVARRLSGFGMKVLAYDPYPDEEFAKEHGV-----EFVSLEELLKESDFISLHLPLTPE 209
Query: 232 TIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD-------GAEGP 284
T +INA L +KPGA L+NT L+D+ A+ + L G +AG ALD A+ P
Sbjct: 210 TRHLINAAELALMKPGAILINTARGGLVDEEALYEALKSGRIAGAALDVFEEEPPPADSP 269
Query: 285 QWMEAWVREMPNVLILPRSADYSEE 309
+ E+PNV++ P ++E
Sbjct: 270 ------LLELPNVILTPHIGASTKE 288
|
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306 |
| >gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 3e-31
Identities = 68/180 (37%), Positives = 95/180 (52%), Gaps = 9/180 (5%)
Query: 123 MALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSL 182
+ALLL L RR A + A W +P R G +GI+G RA+A R
Sbjct: 1 LALLLALARRIPE-ADRQVRAGRW----RPDALLGRELSGKTVGIIGLGRIGRAVARRLK 55
Query: 183 SFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQ 242
+F M V+ +D K + R +L++LLA SDV+SLH +T ET +INAE L
Sbjct: 56 AFGMKVIAYDR---YPKAEAEALGARYVSLDELLAESDVVSLHLPLTPETRHLINAERLA 112
Query: 243 HIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREMPNVLILP 301
+KPGA L+NT L+D+ A+ L G +AG ALD E P + + E+PNV++ P
Sbjct: 113 LMKPGAILINTARGGLVDEDALIAALKSGRIAGAALDVFEPEPLPPDHPLLELPNVILTP 172
|
This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175 |
| >gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 8e-31
Identities = 66/243 (27%), Positives = 107/243 (44%), Gaps = 20/243 (8%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLC 154
+D G+++ + + E ADT + L+LG LR A + A W G
Sbjct: 90 IDVDALTKRGIQVSNTPGAVDEATADTALFLILGALRNFSR-AERSARAGKWRG--FLDL 146
Query: 155 RGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDV------PEGKGKVTFPSAARR 208
RG LGI+G +A+A ++ +F M ++Y + E + S
Sbjct: 147 TLAHDPRGKTLGILGLGGIGKAIARKAAAFGMKIIYHNRSRLPEELEKALATYYVS---- 202
Query: 209 MDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLL 268
L++LLA SDV+SL+C +T T +IN + +K G +VNT ++D+ A+ L
Sbjct: 203 ---LDELLAQSDVVSLNCPLTAATRHLINKKEFAKMKDGVIIVNTARGAVIDEDALVDAL 259
Query: 269 IDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVW--MEIRDKAISVLQTFF 326
G +A LD E + + +MPNV +LP + E ME + ++ F
Sbjct: 260 ESGKVASAGLDVFENEPEVNPGLLKMPNVTLLPHMGTLTVETQEKMEEL--VLENIEAFL 317
Query: 327 FDG 329
G
Sbjct: 318 ETG 320
|
D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321 |
| >gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 5e-28
Identities = 66/231 (28%), Positives = 102/231 (44%), Gaps = 20/231 (8%)
Query: 83 QLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALS 142
+LI VD A + G+ +++ AE +A+ + L+L R A AL
Sbjct: 69 KLIGVCRGGPENVDVEAATERGIPVLNTPGRNAEAVAEFTVGLMLAETRNI-ARAHAALK 127
Query: 143 ASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFD--VPEGKGKV 200
W RG +GIVG A R +A R +F VL +D V
Sbjct: 128 DGEWRKDYYNYDGYGPELRGKTVGIVGFGAIGRRVAKRLKAFGAEVLVYDPYVDP----E 183
Query: 201 TFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLD 260
+ + +L +LL SDV+SLH +T ET +I AE +KP A+ +NT + L+D
Sbjct: 184 KIEADGVKKVSLEELLKRSDVVSLHARLTPETRGMIGAEEFALMKPTAYFINTARAGLVD 243
Query: 261 DCAVKQLLIDGTLAGCALD-------GAEGPQWMEAWVREMPNVLILPRSA 304
+ A+ + L +G + G ALD A+ P + ++ NV + P A
Sbjct: 244 EDALIEALEEGKIGGAALDVFPEEPLPADHP------LLKLDNVTLTPHIA 288
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310 |
| >gnl|CDD|240620 cd01619, LDH_like, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 2e-27
Identities = 62/247 (25%), Positives = 104/247 (42%), Gaps = 30/247 (12%)
Query: 94 TVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRT----HLLARHALSASGWLGS 149
+D A +LG+ + +V +A+ +AL+L LLR L +G +G
Sbjct: 80 NIDLDYAKELGIGVTNVPEYSPNAVAEHTIALILALLRNRKYIDERDKNQDLQDAGVIG- 138
Query: 150 VQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRM 209
R +G+VG RA+A R+ F M V+ +D +
Sbjct: 139 --------RELEDQTVGVVGTGKIGRAVAQRAKGFGMKVIAYDPFRNPE---LEDKGVKY 187
Query: 210 DTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269
+L +L SD+ISLH +T E +IN E + +K G ++NT L+D A+ + L
Sbjct: 188 VSLEELFKNSDIISLHVPLTPENHHMINEEAFKLMKKGVIIINTARGSLVDTEALIEALD 247
Query: 270 DGTLAGCALD--GAEGPQWMEAWVRE------------MPNVLILPRSADYSEEVWMEIR 315
G + G LD E P ++ E PNV+I P +A Y+++ +
Sbjct: 248 SGKIFGAGLDVLEDETPDLLKDLEGEIFKDALNALLGRRPNVIITPHTAFYTDDALKNMV 307
Query: 316 DKAISVL 322
+ + +
Sbjct: 308 EISCENI 314
|
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 323 |
| >gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH) | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 1e-26
Identities = 80/257 (31%), Positives = 117/257 (45%), Gaps = 32/257 (12%)
Query: 71 LPRAA-QRRLRPYQLILCLGSSDRTVDSALAADLG-LRLI--------HVD----TSRA- 115
LPR + +LC + D+ +D+ L L++I H+D +R
Sbjct: 32 LPREELLEAAKGADGLLCTLT-DK-IDAELLDAAPPLKVIANYSVGYDHIDVDAAKARGI 89
Query: 116 ----------EEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVL 165
+ AD ALLL RR R + A W P G L
Sbjct: 90 PVTNTPDVLTDATADLAFALLLAAARRVVEGDRF-VRAGEW-KGWSPTLLLGTDLHGKTL 147
Query: 166 GIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLH 225
GIVG +A+A R+ F M +LY + K + AR + L++LLA SD +SLH
Sbjct: 148 GIVGMGRIGQAVARRAKGFGMKILYHN-RSRKPEAEEELGARYVS-LDELLAESDFVSLH 205
Query: 226 CAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-P 284
C +T ET +INAE L +KP A L+NT ++D+ A+ + L G +AG LD E P
Sbjct: 206 CPLTPETRHLINAERLALMKPTAILINTARGGVVDEDALVEALKSGKIAGAGLDVFEPEP 265
Query: 285 QWMEAWVREMPNVLILP 301
+ + +PNV++LP
Sbjct: 266 LPADHPLLTLPNVVLLP 282
|
D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309 |
| >gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 3e-25
Identities = 73/250 (29%), Positives = 114/250 (45%), Gaps = 24/250 (9%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLC 154
+D A + G+ + + E A+ L+L L RR R + G+LG PL
Sbjct: 79 IDVDYAKEKGIPVTNTPAVSTEPTAELTFGLILALARRIAEGDRL-MRRGGFLG-WAPLF 136
Query: 155 RGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDV------PEGKGKVTFPSAARR 208
G LGI+G +A+A R+ +F M +LY++ E + T+
Sbjct: 137 FLGHELAGKTLGIIGMGRIGQAVARRAKAFGMKILYYNRHRLSEETEKELGATYVD---- 192
Query: 209 MDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLL 268
L++LL SD +SLH T ET +I+A + +KP A+L+N L+D+ A+ L
Sbjct: 193 ---LDELLKESDFVSLHAPYTPETHHLIDAAAFKLMKPTAYLINAARGPLVDEKALVDAL 249
Query: 269 IDGTLAGCALDGAEGPQWMEAWVREMPNVLILPR--SADYSEEVWM--EIRDKAISVLQT 324
G +AG ALD E + ++++ NV++ P +A M E D IS L+
Sbjct: 250 KTGEIAGAALDVFEFEPEVSPELKKLDNVILTPHIGNATVEARDAMAKEAADNIISFLE- 308
Query: 325 FFFDGVIPKN 334
G PKN
Sbjct: 309 ----GKRPKN 314
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317 |
| >gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 102 bits (258), Expect = 3e-24
Identities = 66/201 (32%), Positives = 98/201 (48%), Gaps = 26/201 (12%)
Query: 119 ADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRR-CRGLVLGIVGRSASARAL 177
A+ +AL+L L R +L A W + M RG LGIVG R +
Sbjct: 100 AEHTIALMLALARNIPQADA-SLRAGKWDRK-----KFMGVELRGKTLGIVGLGRIGREV 153
Query: 178 ATRSLSFKMSVLYFD--VPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQI 235
A R+ +F M VL +D + + + + +L++LLA +D ISLH +T ET +
Sbjct: 154 ARRARAFGMKVLAYDPYISAER----AAAGGVELVSLDELLAEADFISLHTPLTPETRGL 209
Query: 236 INAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD-------GAEGPQWME 288
INAE L +KPGA L+NT ++D+ A+ L G +AG ALD A+ P
Sbjct: 210 INAEELAKMKPGAILINTARGGIVDEAALADALKSGKIAGAALDVFEQEPPPADSP---- 265
Query: 289 AWVREMPNVLILPRSADYSEE 309
+ +PNV++ P +EE
Sbjct: 266 --LLGLPNVILTPHLGASTEE 284
|
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304 |
| >gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 7e-24
Identities = 79/289 (27%), Positives = 122/289 (42%), Gaps = 15/289 (5%)
Query: 41 VALVEHVPLGRLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALA 100
L E L AV+ + L A L +LI G +D A
Sbjct: 24 HRLWEAADPAALLAEHGGRIRAVVTNGETGLSAALIAALPALELIASFGVGYDGIDLDAA 83
Query: 101 ADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLAR--HALSASGWLGSVQPLCRGMR 158
G+R+ + +++AD + LLL +LRR + + A W PL R +
Sbjct: 84 RARGIRVTNTPGVLTDDVADLAVGLLLAVLRR---IPAADRFVRAGRWPKGAFPLTRKVS 140
Query: 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAA 218
R +GIVG RA+A R +F M + Y K V + R +L +L A
Sbjct: 141 GKR---VGIVGLGRIGRAIARRLEAFGMEIAYHG-RRPKPDVPY----RYYASLLELAAE 192
Query: 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCAL 278
SDV+ + C T ++NAE L+ + P LVN ++D+ A+ L +G +AG L
Sbjct: 193 SDVLVVACPGGPATRHLVNAEVLEALGPDGVLVNVARGSVVDEAALIAALQEGRIAGAGL 252
Query: 279 DGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFF 326
D E P A ++ NV++ P A + E + D ++ L+ FF
Sbjct: 253 DVFENEPNVPAAL-LDLDNVVLTPHIASATVETRRAMGDLVLANLEAFF 300
|
Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301 |
| >gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 100 bits (253), Expect = 1e-23
Identities = 66/193 (34%), Positives = 92/193 (47%), Gaps = 21/193 (10%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSAS--GWLGSVQ- 151
VD A A + G+ + +V + +A ALLL L L+A H W S
Sbjct: 79 VDLAAAKERGITVTNVPGYSTDSVAQHTFALLLAL---ARLVAYHNDVVKAGEWQKSPDF 135
Query: 152 -----PLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA 206
P+ G LGI+G +A+A + +F M VL+ + P
Sbjct: 136 CFWDYPI----IELAGKTLGIIGYGNIGQAVARIARAFGMKVLFAERKGAP-----PLRE 186
Query: 207 RRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQ 266
+ L++LLA SDVISLHC +T ET +INAE L +KPGA L+NT L+D+ A+
Sbjct: 187 GYVS-LDELLAQSDVISLHCPLTPETRNLINAEELAKMKPGAILINTARGGLVDEQALAD 245
Query: 267 LLIDGTLAGCALD 279
L G +AG LD
Sbjct: 246 ALNSGKIAGAGLD 258
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307 |
| >gnl|CDD|235890 PRK06932, PRK06932, glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 99.9 bits (249), Expect = 4e-23
Identities = 81/286 (28%), Positives = 131/286 (45%), Gaps = 22/286 (7%)
Query: 52 LADGKIEAA--AAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIH 109
A+ IE A A +++ S R +L +LI + VD A +LG+ + +
Sbjct: 34 SAEQTIERAKDADIVITSKVLFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKN 93
Query: 110 VDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLC---RGMRRCRGLVLG 166
V + + + V+ ++ L R LS W Q C + RG LG
Sbjct: 94 VTGYSSTTVPEHVLGMIFALKHSLMGWYRDQLSDR-WATCKQ-FCYFDYPITDVRGSTLG 151
Query: 167 IVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDT-LNDLLAASDVISLH 225
+ G+ + + + M VLY E KG S R T ++L +D+++LH
Sbjct: 152 VFGKGCLGTEVGRLAQALGMKVLY---AEHKGA----SVCREGYTPFEEVLKQADIVTLH 204
Query: 226 CAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD--GAEG 283
C +T+ T +INAE L +KP AFL+NTG L+D+ A+ L +G +AG ALD E
Sbjct: 205 CPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEP 264
Query: 284 PQ----WMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTF 325
P+ ++A + +PN+LI P A S+ + +K ++ F
Sbjct: 265 PEKDNPLIQA-AKRLPNLLITPHIAWASDSAVTTLVNKVAQNIEEF 309
|
Length = 314 |
| >gnl|CDD|240663 cd12187, LDH_like_1, D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 99.7 bits (249), Expect = 6e-23
Identities = 70/246 (28%), Positives = 99/246 (40%), Gaps = 44/246 (17%)
Query: 109 HVDTSRAEEIADTVMALLLGLLRR---THLLARH-ALSASGWLGSVQPLCRGMRRCRGLV 164
+V +A+ ALLL L R+ R S +G G G
Sbjct: 91 NVPDYGEATVAEHAFALLLALSRKLREAIERTRRGDFSQAGLRG---------FELAGKT 141
Query: 165 LGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMD----TLNDLLAASD 220
LG+VG R +A + F M VL +DV V A R+ +L +LL SD
Sbjct: 142 LGVVGTGRIGRRVARIARGFGMKVLAYDV------VPDEELAERLGFRYVSLEELLQESD 195
Query: 221 VISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280
+ISLH T +T +IN E +KPGA L+NT ++D A+ + L +G LAG LD
Sbjct: 196 IISLHVPYTPQTHHLINRENFALMKPGAVLINTARGAVVDTEALVRALKEGKLAGAGLDV 255
Query: 281 AEG-PQWME---------------AWVR-----EMPNVLILPRSADYSEEVWMEIRDKAI 319
E E + PNV+I P A ++E I D +
Sbjct: 256 LEQEEVLREEAELFREDVSPEDLKKLLADHALLRKPNVIITPHVAYNTKEALERILDTTV 315
Query: 320 SVLQTF 325
++ F
Sbjct: 316 ENIKAF 321
|
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329 |
| >gnl|CDD|180588 PRK06487, PRK06487, glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 95.2 bits (237), Expect = 2e-21
Identities = 71/233 (30%), Positives = 108/233 (46%), Gaps = 15/233 (6%)
Query: 83 QLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLA-RHAL 141
+LIL + VD A A + G+ + + +A +ALLL L R L + A+
Sbjct: 68 KLILVAATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATR--LPDYQQAV 125
Query: 142 SASGWLGSVQ--PLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK 199
+A W S Q L + G LG++G A+A + +F M VL +P
Sbjct: 126 AAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGR--- 182
Query: 200 VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLL 259
P+ R+ L++LL D ++LHC +T+ T +I A L +KPGA L+NT L+
Sbjct: 183 ---PARPDRLP-LDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLV 238
Query: 260 DDCAVKQLLIDGTLAGCALD--GAEGP-QWMEAWVREMPNVLILPRSADYSEE 309
D+ A+ L G L G A D E P ++P +++ P SA S E
Sbjct: 239 DEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSRE 291
|
Length = 317 |
| >gnl|CDD|240659 cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 95.2 bits (238), Expect = 2e-21
Identities = 77/271 (28%), Positives = 112/271 (41%), Gaps = 53/271 (19%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHA--------LSASGW 146
VD A +LG+ ++ V +A+ +ALLL L R+ H A S G
Sbjct: 82 VDLKAAKELGITVVRVPAYSPYAVAEHAVALLLALNRKIH----RAYNRVREGNFSLDGL 137
Query: 147 LGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA 206
LG + G +G++G +A A F VL +D +P+
Sbjct: 138 LG------FDLH---GKTVGVIGTGKIGQAFARILKGFGCRVLAYDP--------YPNPE 180
Query: 207 R-----RMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDD 261
L++LLA SD+ISLHC +T ET +INAE + +K G L+NT L+D
Sbjct: 181 LAKLGVEYVDLDELLAESDIISLHCPLTPETHHLINAETIAKMKDGVMLINTSRGGLIDT 240
Query: 262 CAVKQLLIDGTLAGCALD--GAEGPQWMEAWVRE------------MPNVLILPRSADYS 307
A+ + L G + G LD E + E E PNVLI A ++
Sbjct: 241 KALIEALKSGKIGGLGLDVYEEEAGLFFEDHSDEIIQDDVLARLLSFPNVLITGHQAFFT 300
Query: 308 EEVWMEIRDKAISVLQ--TFFFDGVIPKNAI 336
+E I A + L+ F G KN +
Sbjct: 301 KEALTNI---AETTLENLDDFEAGKPLKNEV 328
|
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 328 |
| >gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 3e-21
Identities = 66/182 (36%), Positives = 93/182 (51%), Gaps = 16/182 (8%)
Query: 115 AEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGL---VLGIVGRS 171
E A+ + LL+GL R H+LA SG G +P G GL +GI+G
Sbjct: 100 TEPTAELTIGLLIGLGR--HILAGDRFVRSGKFGGWRPKFYGT----GLDGKTVGILGMG 153
Query: 172 ASARALATRSLSFKMSVLYFDVPEGKGKVTF-PSAARRMDTLNDLLAASDVISLHCAVTD 230
A RA+A R F ++LY+D P + RR++ L++LL +SD + L +T
Sbjct: 154 ALGRAIARRLSGFGATLLYYD-PHPLDQAEEQALNLRRVE-LDELLESSDFLVLALPLTP 211
Query: 231 ETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAW 290
+T+ +INAE L +KPGA LVN ++D+ AV + L G L G A D E ME W
Sbjct: 212 DTLHLINAEALAKMKPGALLVNPCRGSVVDEAAVAEALKSGHLGGYAADVFE----MEDW 267
Query: 291 VR 292
R
Sbjct: 268 AR 269
|
Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318 |
| >gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 94.1 bits (235), Expect = 3e-21
Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 13/188 (6%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLC 154
+D A G+++I+ + + +A+ V+ L+L L R H R + W
Sbjct: 77 IDVEYAKKKGIKVINTPGASSNSVAELVIGLMLSLARFIHRANRE-MKLGKWNKK---KY 132
Query: 155 RGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDV---PEGKGKVTFPSAARRMDT 211
+G RG LGI+G R +A + + M+V+ +D E ++ + +
Sbjct: 133 KG-IELRGKTLGIIGFGRIGREVAKIARALGMNVIAYDPYPKDEQAVELGVKTV-----S 186
Query: 212 LNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDG 271
L +LL SD ISLH +T ET +IN + L+ +K GA ++NT ++D+ A+ + L G
Sbjct: 187 LEELLKNSDFISLHVPLTPETKHMINKKELELMKDGAIIINTSRGGVIDEEALLEALKSG 246
Query: 272 TLAGCALD 279
LAG ALD
Sbjct: 247 KLAGAALD 254
|
Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301 |
| >gnl|CDD|240653 cd12176, PGDH_3, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 2e-20
Identities = 64/226 (28%), Positives = 105/226 (46%), Gaps = 28/226 (12%)
Query: 87 CLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLAR-HALSASG 145
C+G VD AA G+ + + S +A+ V+ ++ L RR L R A
Sbjct: 72 CIG--TNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIIMLARR--LPDRNAAAHRGI 127
Query: 146 WLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDV----PEGKGKVT 201
W S G RG LGI+G L+ + + M V+++D+ P G
Sbjct: 128 WNKS----ATGSHEVRGKTLGIIGYGHIGSQLSVLAEALGMRVIFYDIAEKLPLGN---- 179
Query: 202 FPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDD 261
AR++ +L +LLA +D ++LH T T +I AE + +K GA L+N ++D
Sbjct: 180 ----ARQVSSLEELLAEADFVTLHVPATPSTKNMIGAEEIAQMKKGAILINASRGTVVDI 235
Query: 262 CAVKQLLIDGTLAGCALD------GAEGPQWMEAWVREMPNVLILP 301
A+ + L G LAG A+D + G + + ++ +PNV++ P
Sbjct: 236 DALAEALRSGHLAGAAVDVFPEEPASNGEPF-SSPLQGLPNVILTP 280
|
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304 |
| >gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 4e-20
Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 25/243 (10%)
Query: 68 LAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLL 127
LA PR LR ++ S R + + + G+ + + AE +A+ +A +L
Sbjct: 67 LARAPR-----LR---AVVHAAGSVRGLVTDAVWERGILVTSAADANAEPVAEFTLAAIL 118
Query: 128 GLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMS 187
LRR A + W + RG+ G +GIVG RA+ F +
Sbjct: 119 LALRRIPRFAAAYRAGRDWGWPTRRGGRGLY---GRTVGIVGFGRIGRAVVELLRPFGLR 175
Query: 188 VLYFD--VPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIK 245
VL +D +P + + + +L++LLA SDV+SLH +T ET +I+A L ++
Sbjct: 176 VLVYDPYLPAAEAA----ALGVELVSLDELLARSDVVSLHAPLTPETRGMIDARLLALMR 231
Query: 246 PGAFLVNTGSSQLLDDCAVKQLLIDGTLAG---CALD-GAEGPQWMEAWVREMPNVLILP 301
GA +NT L+D+ A L+ +G ALD P ++ +R +PNVL+ P
Sbjct: 232 DGATFINTARGALVDEAA----LLAELRSGRLRAALDVTDPEPLPPDSPLRTLPNVLLTP 287
Query: 302 RSA 304
A
Sbjct: 288 HIA 290
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 330 |
| >gnl|CDD|240662 cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 6e-20
Identities = 73/243 (30%), Positives = 104/243 (42%), Gaps = 47/243 (19%)
Query: 94 TVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRT----HLLARHALSASGWLGS 149
+D LA + GL++ +V IA+ + L LLR T +A+ W
Sbjct: 81 MIDLDLAKENGLKITNVPAYSPRAIAEFAVTQALNLLRNTPEIDRRVAKGDFR---WAPG 137
Query: 150 VQPLCRGMRRCRGLVLGIVG--R--SASARALATRSLSFKMSVLYFDV---PEGKGKVTF 202
+ R R L +GI+G R SA+A+ F V+ +D PE + + +
Sbjct: 138 LIG-----REIRDLTVGIIGTGRIGSAAAKIFK----GFGAKVIAYDPYPNPELEKFLLY 188
Query: 203 PSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDC 262
D+L DLL +D+ISLH +T E +INAE +K GA LVN L+D
Sbjct: 189 ------YDSLEDLLKQADIISLHVPLTKENHHLINAEAFAKMKDGAILVNAARGGLVDTK 242
Query: 263 AVKQLLIDGTLAGCALDGAEG----------------PQWMEAWVREMPNVLILPRSADY 306
A+ L G +AG ALD E E + MPNVLI P A Y
Sbjct: 243 ALIDALDSGKIAGAALDTYENETGYFNKDWSGKEIEDEVLKE--LIAMPNVLITPHIAFY 300
Query: 307 SEE 309
++
Sbjct: 301 TDT 303
|
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329 |
| >gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 7e-20
Identities = 72/252 (28%), Positives = 121/252 (48%), Gaps = 36/252 (14%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIAD-TVMALLLGLLRRTHLLARHALSASGWLGSVQPL 153
+D A +LG+++ +V S +AD TVM L+L LR+ + + A LG +Q
Sbjct: 82 IDLDAAKELGIKVSNVTYS-PNSVADYTVM-LMLMALRKYKQIMKRAEVNDYSLGGLQ-- 137
Query: 154 CRGMRRCRGLVLGIVGRSASARALATRSLS-FKMSVLYFDV---PEGKGKVTFPSAARRM 209
G R R L +G++G +A+ ++LS F +L +D E K +
Sbjct: 138 --G-RELRNLTVGVIGTGRIGQAVI-KNLSGFGCKILAYDPYPNEEVKKYAEYVD----- 188
Query: 210 DTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269
L+ L SD+I+LH +T+ET +IN E + +K G ++NT +L+D A+ + L
Sbjct: 189 --LDTLYKESDIITLHTPLTEETYHLINKESIAKMKDGVIIINTARGELIDTEALIEGLE 246
Query: 270 DGTLAGCALDGAEGP---------------QWMEAWVREMPNVLILPRSADYSEEVWMEI 314
G + G ALD EG + + A +R PNV++ P A Y+++ ++
Sbjct: 247 SGKIGGAALDVIEGEDGIYYNDRKGDILSNREL-AILRSFPNVILTPHMAFYTDQAVSDM 305
Query: 315 RDKAISVLQTFF 326
+ +I L F
Sbjct: 306 VENSIESLVAFE 317
|
This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 322 |
| >gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 1e-19
Identities = 64/235 (27%), Positives = 101/235 (42%), Gaps = 33/235 (14%)
Query: 95 VDSALAADLGLRLIHVDTSR---AEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQ 151
VD+ L +L R + + +R IA+ V+ +L R+ AR+ W Q
Sbjct: 70 VDALLFPELLERDVVLTNARGIFGPPIAEYVLGYMLAFARKLPRYARNQAERR-W----Q 124
Query: 152 PLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVL-----YFDVPEGKGKVTFPSAA 206
+R G + IVG R +A R+ +F M V+ P +V
Sbjct: 125 RR-GPVRELAGKTVLIVGLGDIGREIARRAKAFGMRVIGVRRSGRPAPPVVDEV------ 177
Query: 207 RRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQ 266
D L++LL +D + +T ET + NAE +KPGA L+N G ++D+ A+ +
Sbjct: 178 YTPDELDELLPEADYVVNALPLTPETRGLFNAERFAAMKPGAVLINVGRGSVVDEDALIE 237
Query: 267 LLIDGTLAGCALD-------GAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEI 314
L G +AG ALD A+ P W ++PNV+I P + S +
Sbjct: 238 ALESGRIAGAALDVFEEEPLPADSPLW------DLPNVIITPHISGDSPSYPERV 286
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313 |
| >gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 2e-19
Identities = 67/241 (27%), Positives = 109/241 (45%), Gaps = 46/241 (19%)
Query: 115 AEEIADTVMALLLGLLRRTHLLARHALSASGW--LGSVQPLCRGMRR---------CRGL 163
A +A+ V+A++L L+R+ + A W G + +G+ + RG
Sbjct: 84 ANAVAELVIAMML-------ALSRNIIQAIKWVTNGDGDDISKGVEKGKKQFVGTELRGK 136
Query: 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR---------RMDTLND 214
LG++G R +A +L+ M V+ +D + S R+ +L +
Sbjct: 137 TLGVIGLGNIGRLVANAALALGMKVIGYD--------PYLSVEAAWKLSVEVQRVTSLEE 188
Query: 215 LLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274
LLA +D I+LH +TDET +INAE L +KPGA L+N +++D+ A+ + L +G L
Sbjct: 189 LLATADYITLHVPLTDETRGLINAELLAKMKPGAILLNFARGEIVDEEALLEALDEGKLG 248
Query: 275 GCALDGAEGPQWMEAWVREMPNVLILPR---SADYSEEVWMEIRDKAISVLQTFFFDGVI 331
G D E A + +PNV+ P S + +EE A + F G I
Sbjct: 249 GYVTDFPE-----PALLGHLPNVIATPHLGASTEEAEE---NCAVMAARQIMDFLETGNI 300
Query: 332 P 332
Sbjct: 301 T 301
|
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305 |
| >gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 6e-19
Identities = 58/248 (23%), Positives = 98/248 (39%), Gaps = 16/248 (6%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLC 154
+D A + G+ + +V E +A+ + L+L L RR ++ A W P+
Sbjct: 74 IDLDAATERGILVTNVPGYSTESVAELTVGLILALARRIPEADA-SVRAGDW-KKGGPIG 131
Query: 155 RGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDV-----PEGKGKVTFPSAARRM 209
+ V+G G A+A M V+ +D +G V
Sbjct: 132 LELYGKTLGVIGGGGIGGIGAAIAKA---LGMGVVAYDPYPNPERAEEGGVEVLLLD--- 185
Query: 210 DTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269
L DL + D+I+L T +T II E +K + N ++++ A+ LL
Sbjct: 186 LLLLDLKESDDLINLAPPTTMKTGHIIINEARGMLKDAVAINNARGGGVIEEAALDALLE 245
Query: 270 DGTLAGCALDGA-EGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFD 328
+G A E P + ++PNV++ P A +EE + ++A L F
Sbjct: 246 EGIAAAALDVVEEEPPPVNSPLL-DLPNVILTPHIAGATEEAQENMAEEAAENLLA-FLK 303
Query: 329 GVIPKNAI 336
G P NA+
Sbjct: 304 GGTPPNAV 311
|
This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 312 |
| >gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 8e-19
Identities = 71/240 (29%), Positives = 107/240 (44%), Gaps = 11/240 (4%)
Query: 71 LPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLL 130
P A RL +L++ G + ++D A A + G+ + A+ AL+L L
Sbjct: 59 FPAALLERLPNLKLLVTTGMRNASIDLAAAKERGIVVCGTGGG-PTATAELTWALILALA 117
Query: 131 RRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLY 190
R AL A GW ++ G G LGIVG +A +F M V+
Sbjct: 118 RNLPEEDA-ALRAGGWQTTL-----GTG-LAGKTLGIVGLGRIGARVARIGQAFGMRVIA 170
Query: 191 FDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFL 250
+ + + + +L A SDV+SLH ++D T ++ AE L +KP A L
Sbjct: 171 WS-SNLTAERAAAAGVEAAVSKEELFATSDVVSLHLVLSDRTRGLVGAEDLALMKPTALL 229
Query: 251 VNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE-GPQWMEAWVREMPNVLILPRSADYSEE 309
VNT L+D+ A+ L G +AG ALD + P + +R +PNVL+ P Y E
Sbjct: 230 VNTSRGPLVDEGALLAALRAGRIAGAALDVFDVEPLPADHPLRGLPNVLLTPHIG-YVTE 288
|
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308 |
| >gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 3e-18
Identities = 65/226 (28%), Positives = 104/226 (46%), Gaps = 13/226 (5%)
Query: 115 AEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASA 174
+ +A+ +AL+L +LR+ A A+ W + + G G +GI+G
Sbjct: 104 RDAVAEHAVALILTVLRKI-NQASEAVKEGKW--TERANFVG-HELSGKTVGIIGYGNIG 159
Query: 175 RALA-TRSLSFKMSVLYFD--VPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDE 231
+A F VL +D V E K + +L +LLA SD+ISLH +T+E
Sbjct: 160 SRVAEILKEGFNAKVLAYDPYVSEEVIK----KKGAKPVSLEELLAESDIISLHAPLTEE 215
Query: 232 TIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAW 290
T +IN + +K G LVNT +L+D+ A+ + L G +AG LD E P +
Sbjct: 216 TYHMINEKAFSKMKKGVILVNTARGELIDEEALIEALKSGKIAGAGLDVLEEEPIKADHP 275
Query: 291 VREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAI 336
+ NV+I P Y+ E + +K + ++ F G PK +
Sbjct: 276 LLHYENVVITPHIGAYTYESLYGMGEKVVDDIED-FLAGKEPKGIL 320
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321 |
| >gnl|CDD|185307 PRK15409, PRK15409, bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 6e-18
Identities = 62/214 (28%), Positives = 93/214 (43%), Gaps = 14/214 (6%)
Query: 94 TVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPL 153
D + L+H T E +ADT+MAL+L RR +A + A W S+ P
Sbjct: 79 NFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAER-VKAGEWTASIGPD 137
Query: 154 CRGMRRCRGLVLGIVGRSASARALATRS-LSFKMSVLYFDVPEGKGKVTFPSAARRMDT- 211
G LGIVG ALA R+ F M +LY + A R +
Sbjct: 138 WFGTD-VHHKTLGIVGMGRIGMALAQRAHFGFNMPILY------NARRHHKEAEERFNAR 190
Query: 212 ---LNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLL 268
L+ LL SD + + +TDET + AE +K A +N G ++D+ A+ L
Sbjct: 191 YCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAAL 250
Query: 269 IDGTLAGCALDGAEG-PQWMEAWVREMPNVLILP 301
G + LD E P +++ + +PNV+ +P
Sbjct: 251 QKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVP 284
|
Length = 323 |
| >gnl|CDD|236985 PRK11790, PRK11790, D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 82.1 bits (204), Expect = 1e-16
Identities = 63/196 (32%), Positives = 94/196 (47%), Gaps = 28/196 (14%)
Query: 118 IADTVMALLLGLLRRTHLLARHALSASG-WLGSVQPLCRGMRRCRGLVLGIVGRSASARA 176
+A+ V+ ++ LLR + ++A + G W S G RG LGIVG
Sbjct: 112 VAELVIGEIILLLRG--IPEKNAKAHRGGWNKSAA----GSFEVRGKTLGIVGYGHIGTQ 165
Query: 177 LATRSLSFKMSVLYFDV----PEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDET 232
L+ + S M V ++D+ P G AR++ +L +LLA SDV+SLH T T
Sbjct: 166 LSVLAESLGMRVYFYDIEDKLPLGN--------ARQVGSLEELLAQSDVVSLHVPETPST 217
Query: 233 IQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD-------GAEGPQ 285
+I AE L +KPGA L+N ++D A+ L G LAG A+D P
Sbjct: 218 KNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDP- 276
Query: 286 WMEAWVREMPNVLILP 301
E+ +R + NV++ P
Sbjct: 277 -FESPLRGLDNVILTP 291
|
Length = 409 |
| >gnl|CDD|240657 cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 1e-16
Identities = 61/222 (27%), Positives = 93/222 (41%), Gaps = 28/222 (12%)
Query: 113 SRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSA 172
AE IA+ V+A +L L A W +PL G LGIVG A
Sbjct: 94 VAAEAIAEFVLAAILA--AAKRLPEIWVKGAEQW--RREPL----GSLAGSTLGIVGFGA 145
Query: 173 SARALATRSLSFKMSVL-------YFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLH 225
+ALA R+L+ M VL DVP L +L A SD + L
Sbjct: 146 IGQALARRALALGMRVLALRRSGRPSDVP----------GVEAAADLAELFARSDHLVLA 195
Query: 226 CAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQ 285
+T ET +INA+ L KPG L+N L+D A+ + L G ++ +LD + P+
Sbjct: 196 APLTPETRHLINADVLAQAKPGLHLINIARGGLVDQEALLEALDSGRISLASLDVTD-PE 254
Query: 286 WMEA--WVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTF 325
+ + P V + P ++ + + + D+ + L +
Sbjct: 255 PLPEGHPLYTHPRVRLSPHTSAIAPDGRRNLADRFLENLARY 296
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 308 |
| >gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 2e-16
Identities = 67/276 (24%), Positives = 115/276 (41%), Gaps = 39/276 (14%)
Query: 90 SSDRTVDSALAADLGLRLIHV--------DTSR-------------AEEIADTVMALLLG 128
T + ALAA L+LI V R + +A+ +AL+L
Sbjct: 46 GGRLTKEEALAALKRLKLIQVPSAGVDHLPLERLPEGVVVANNHGNSPAVAEHALALILA 105
Query: 129 LLRRTHLLARHALSASG-WLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMS 187
L +R ++ G W G + RG +GI+G R +A +F M
Sbjct: 106 LAKR--IVEYDNDLRRGIWHGRAGEE-PESKELRGKTVGILGYGHIGREIARLLKAFGMR 162
Query: 188 VLYFDVPEGKGKVTFPSAARR-MDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKP 246
V+ K + + L++ L +DV+ + +T +T +I A L +KP
Sbjct: 163 VIGVS---RSPKEDEGADFVGTLSDLDEALEQADVVVVALPLTKQTRGLIGAAELAAMKP 219
Query: 247 GAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD------GAEGPQWMEAW-VREMPNVLI 299
GA LVN G ++D+ A+ + L + +AG A+D P + E+PNV++
Sbjct: 220 GAILVNVGRGPVVDEEALYEALKERPIAGAAIDVWWRYPSRGDPVAPSRYPFHELPNVIM 279
Query: 300 LPRSADYSEEVWME-IRDKAISVLQTFFFDGVIPKN 334
P +A ++EE + I + A ++ + + G N
Sbjct: 280 SPHNAGWTEETFRRRIDEAAENIRR--YLRGEPLLN 313
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314 |
| >gnl|CDD|240627 cd05302, FDH, NAD-dependent Formate Dehydrogenase (FDH) | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 4e-16
Identities = 61/214 (28%), Positives = 97/214 (45%), Gaps = 9/214 (4%)
Query: 69 AYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLG 128
AY+ + + +L L G VD A D G+ + V S +A+ V+ ++L
Sbjct: 72 AYMTAERIAKAKNLKLALTAGIGSDHVDLQAANDRGITVAEVTGSNVVSVAEHVVMMILI 131
Query: 129 LLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSV 188
L+R A+ GW +V + + G +G VG + R F + +
Sbjct: 132 LVRNYVPGHEQAI-EGGW--NVADVVKRAYDLEGKTVGTVGAGRIGLRVLRRLKPFDVHL 188
Query: 189 LYFD---VPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIK 245
LY+D +PE K R L D+++ DV++++C + ET + N E L +K
Sbjct: 189 LYYDRHRLPEEVEKEL---GLTRHADLEDMVSKCDVVTINCPLHPETEGLFNKELLSKMK 245
Query: 246 PGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD 279
GA+LVNT ++ D AV + L G LAG A D
Sbjct: 246 KGAYLVNTARGKICDREAVAEALESGHLAGYAGD 279
|
NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form. Length = 348 |
| >gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 2e-15
Identities = 64/221 (28%), Positives = 97/221 (43%), Gaps = 12/221 (5%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSV--QP 152
+D A G+ + + E AD ALLL RR S V P
Sbjct: 81 IDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHP 140
Query: 153 LCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMD-- 210
L G +GI+G +A+A R+ F M +LY+ + P A + +
Sbjct: 141 LMFLGYDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYS------RTRKPEAEKELGAE 194
Query: 211 --TLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLL 268
L +LL SD +SLH +T ET +IN E L+ +KP A LVNT +++D A+ + L
Sbjct: 195 YRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKAL 254
Query: 269 IDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEE 309
+G +AG LD E + + + NV++ P + E
Sbjct: 255 KEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIGSATFE 295
|
Length = 333 |
| >gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 4e-15
Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 11/146 (7%)
Query: 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFD--VPEGKGK---VTFPSAARRMDTLNDL 215
G LG++G +A R+ +F M VL +D + + + V +D L++L
Sbjct: 137 YGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPERAEQLGVE------LVDDLDEL 190
Query: 216 LAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAG 275
LA +D I++H +T ET +I AE L +K G +VN ++D+ A+ + L +G +
Sbjct: 191 LARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRA 250
Query: 276 CALDGAEGPQWMEAWVREMPNVLILP 301
ALD E + + ++ NV+ P
Sbjct: 251 AALDVFEKEPPTDNPLFDLDNVIATP 276
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525 |
| >gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 1e-14
Identities = 60/206 (29%), Positives = 94/206 (45%), Gaps = 20/206 (9%)
Query: 116 EEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASAR 175
E +A+ + L + LLR + A+ A G + R G +GIVG A
Sbjct: 104 EAVAELTIGLAIDLLRNI-VPCDAAVRAGGTKAGLIG-----RELAGKTVGIVGTGAIGL 157
Query: 176 ALATRSLSFKMSVLYFDVPEGKGK----VTFPSAARRMDTLNDLLAASDVISLHCAVTDE 231
+A +F VL + E + + + S L++LLA SD++SLH + DE
Sbjct: 158 RVARLFKAFGCKVLAYSRSEKEEAKALGIEYVS-------LDELLAESDIVSLHLPLNDE 210
Query: 232 TIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD--GAEGPQWMEA 289
T +I E L +K A L+NT ++D+ A+ L +G +AG +D E P +
Sbjct: 211 TKGLIGKEKLALMKESAILINTARGPVVDNEALADALNEGKIAGAGIDVFDMEPPLPADY 270
Query: 290 WVREMPNVLILPRSADYSEEVWMEIR 315
+ PN ++ P A +EE ME R
Sbjct: 271 PLLHAPNTILTPHVAFATEEA-MEKR 295
|
This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315 |
| >gnl|CDD|240636 cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 3e-14
Identities = 60/202 (29%), Positives = 86/202 (42%), Gaps = 29/202 (14%)
Query: 115 AEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASA 174
AE +A+ +ALLL LR+ AR A+ W + RG + IVG
Sbjct: 84 AETVAEHALALLLAGLRQLPARAR----ATTW--DPAEEDDLVTLLRGSTVAIVGAGGIG 137
Query: 175 RALATRSLSFKMSVLYFD----VPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTD 230
RAL F V+ + EG + T P D L+++ +D + L +T
Sbjct: 138 RALIPLLAPFGAKVIAVNRSGRPVEGADE-TVP-----ADRLDEVWPDADHVVLAAPLTP 191
Query: 231 ETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD-------GAEG 283
ET +++A L +KP A+LVN L+D A+ L G +AG ALD
Sbjct: 192 ETRHLVDAAALAAMKPHAWLVNVARGPLVDTDALVDALRSGEIAGAALDVTDPEPLPDGH 251
Query: 284 PQWMEAWVREMPNVLILPRSAD 305
P W +PN LI P A+
Sbjct: 252 PLWS------LPNALITPHVAN 267
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 303 |
| >gnl|CDD|177941 PLN02306, PLN02306, hydroxypyruvate reductase | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 1e-13
Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 21/165 (12%)
Query: 161 RGLVLGIVGR----SASARALATRSLSFKMSVLYFDVPEGKGKVTF-------------- 202
+G +G++G SA AR + FKM+++Y+D+ + F
Sbjct: 164 KGQTVGVIGAGRIGSAYARMMVE---GFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQ 220
Query: 203 PSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDC 262
P +R ++ ++L +DVISLH + T +IN E L +K A LVN ++D+
Sbjct: 221 PVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEV 280
Query: 263 AVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYS 307
A+ + L + LD E +M+ + +M N +++P A S
Sbjct: 281 ALVEHLKANPMFRVGLDVFEDEPYMKPGLADMKNAVVVPHIASAS 325
|
Length = 386 |
| >gnl|CDD|240656 cd12179, 2-Hacid_dh_14, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 1e-13
Identities = 52/230 (22%), Positives = 89/230 (38%), Gaps = 30/230 (13%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGL---LRRTHLLARHALSASGWLGSVQ 151
+D A + G+ L + + + + + +LL L L R R+ + W
Sbjct: 76 IDLEYAKEKGIELFNAPEGNRDAVGEHALGMLLALFNKLNRADQEVRNGI----WDREGN 131
Query: 152 PLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDT 211
RG+ G +GI+G +A A R F V+ +D + F A +
Sbjct: 132 ---RGVE-LMGKTVGIIGYGNMGKAFAKRLSGFGCKVIAYDKYK-----NFGDAYAEQVS 182
Query: 212 LNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNT--GSSQLLDDCAVKQLLI 269
L L +D++SLH +T ET ++N E + K + +NT G + D + + L
Sbjct: 183 LETLFKEADILSLHIPLTPETRGMVNKEFISSFKKPFYFINTARGKVVVTKD--LVKALK 240
Query: 270 DGTLAGCALD-------GAEGPQWMEAWVREM---PNVLILPRSADYSEE 309
G + G LD E + P V++ P A ++ E
Sbjct: 241 SGKILGACLDVLEYEKASFESIFNQPEAFEYLIKSPKVILTPHIAGWTFE 290
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306 |
| >gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 70.9 bits (175), Expect = 6e-13
Identities = 42/127 (33%), Positives = 68/127 (53%), Gaps = 18/127 (14%)
Query: 161 RGLVLGIVG--RSASARALATRSLSFKMSVLYFD--VPEGKGKVTFPSAARRMD----TL 212
G LGI+G R S +A R+ +F M V+ +D + + A ++ +L
Sbjct: 139 YGKTLGIIGLGRIGSE--VAKRAKAFGMKVIAYDPYISPER--------AAQLGVELVSL 188
Query: 213 NDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGT 272
++LLA +D I+LH +T ET +I AE L +KPG ++N ++D+ A+ + L G
Sbjct: 189 DELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGK 248
Query: 273 LAGCALD 279
+AG ALD
Sbjct: 249 VAGAALD 255
|
Length = 526 |
| >gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 1e-12
Identities = 55/212 (25%), Positives = 97/212 (45%), Gaps = 5/212 (2%)
Query: 69 AYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLG 128
AYL + +L + G VD A++ G+ + V S + +A+ V+ ++L
Sbjct: 102 AYLTAERIAKAPNLKLAITAGIGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMILA 161
Query: 129 LLRRTHLLARHALSASG-WLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMS 187
L+R + H + G W ++ G+ +GIVG A+ R F +
Sbjct: 162 LVR--NYEPSHRQAVEGGW--NIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVK 217
Query: 188 VLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPG 247
+ Y D +V + + L++ DV+++HC + ET + +A+ L +K G
Sbjct: 218 LHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRG 277
Query: 248 AFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD 279
++LVNT +++D AV + L G LAG A D
Sbjct: 278 SYLVNTARGKIVDRDAVVRALESGHLAGYAGD 309
|
Length = 385 |
| >gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 3e-12
Identities = 63/241 (26%), Positives = 99/241 (41%), Gaps = 35/241 (14%)
Query: 93 RTV-----DSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWL 147
RTV D A +LG ++ V + IA+ L + L R T A + +
Sbjct: 75 RTVGFNHIDLEAAKELGFKMARVPSYSPNAIAELAFTLAMTLSRHTAYTASRT-ANKNFK 133
Query: 148 GSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK---VTFPS 204
+ +R ++G GR A + L K V+ +D+ VTF S
Sbjct: 134 VDPFMFSKEIRNSTVGIIGT-GRIGLTAAKLFKGLGAK--VIGYDIYPSDAAKDVVTFVS 190
Query: 205 AARRMDTLNDLLAASDVISLHCA-VTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCA 263
L++LL SD+ISLH + + ++IN E + +K GA L+NT +L D+ A
Sbjct: 191 -------LDELLKKSDIISLHVPYIKGKNDKLINKEFISKMKDGAILINTARGELQDEEA 243
Query: 264 VKQLLIDGTLAGCALD--------------GAEGP-QWMEAWVREMPNVLILPRSADYSE 308
+ + L G LAG D G + +E + P VL+ P Y++
Sbjct: 244 ILEALESGKLAGFGTDVLNNEKEIFFKDFDGDKIEDPVVEKLLDLYPRVLLTPHIGSYTD 303
Query: 309 E 309
E
Sbjct: 304 E 304
|
(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 330 |
| >gnl|CDD|181414 PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 8e-12
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 15/201 (7%)
Query: 84 LILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSA 143
LI + VD A G+ + +V E +A A+LL LL R + R+ S
Sbjct: 66 LICITATGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSG 125
Query: 144 SGWLGSVQP----LCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK 199
+ S P + R + +G GI+G + +A + +F V+Y+ GK K
Sbjct: 126 E-Y--SESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYS-TSGKNK 181
Query: 200 -VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQL 258
+ +L +LL SD+IS+H + ++T +I + L+ +K GA L+N G +
Sbjct: 182 NEEYERV-----SLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGI 236
Query: 259 LDDCAVKQLLIDGTLAGCALD 279
+++ + + L D LD
Sbjct: 237 VNEKDLAKAL-DEKDIYAGLD 256
|
Length = 311 |
| >gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 4e-11
Identities = 37/102 (36%), Positives = 51/102 (50%), Gaps = 9/102 (8%)
Query: 212 LNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDG 271
+ + +D++ L C +T ET I+N E L +K GA LVN LLD AV L G
Sbjct: 220 IYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESG 279
Query: 272 TLAGCALDGAEGPQWMEAW-----VREMPNVLILPRSADYSE 308
L G A+D A W E + + + PNV+I P A +E
Sbjct: 280 HLGGLAIDVA----WSEPFDPDDPILKHPNVIITPHVAGVTE 317
|
Length = 347 |
| >gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 2e-10
Identities = 40/125 (32%), Positives = 61/125 (48%), Gaps = 13/125 (10%)
Query: 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVP--EGKGKVTFPSAARRMDTLNDLLAA 218
+G +GIVG LA R + M+VL D P E +G F S L +LLA
Sbjct: 114 KGKTVGIVGVGNVGSRLARRLEALGMNVLLCDPPRAEAEGDPGFVS-------LEELLAE 166
Query: 219 SDVISLHCAVTDE----TIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274
+D+I+LH +T + T +++ + L +KPG L+N ++D+ A+ LL G
Sbjct: 167 ADIITLHVPLTRDGEHPTYHLLDEDFLAALKPGQILINASRGAVIDNQALLALLQRGKDL 226
Query: 275 GCALD 279
LD
Sbjct: 227 RVVLD 231
|
D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 343 |
| >gnl|CDD|240641 cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 6e-10
Identities = 79/287 (27%), Positives = 108/287 (37%), Gaps = 62/287 (21%)
Query: 38 LAGVALVEHVPLGRLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDS 97
L + +V AD ++ A P RL + I LG+ VD
Sbjct: 23 LPDIEVVVWPDPADPAD--VDYALV------WKPPPGLLARLPNLKAIFSLGAG---VD- 70
Query: 98 ALAADLGL------RLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQ 151
L AD L RL VD A+ +A+ V+A +L L R A W
Sbjct: 71 HLLADPDLPDVPIVRL--VDPGLAQGMAEYVLAAVLRLHRDMDRYAAQQRRGV-W--KPL 125
Query: 152 PLCRGMRRCRGLV-LGIVGRSASARALATRSLSFKMSVLYFDV------P-EGKGKVTFP 203
P R G++ LG +G A AR LA L F V P + +G F
Sbjct: 126 PQRPAAERRVGVLGLGELGA-AVARRLAA---------LGFPVSGWSRSPKDIEGVTCFH 175
Query: 204 SAARRMDTLNDLLAASDVISLHCAV--TDETIQIINAECLQHIKPGAFLVNTGSSQLLDD 261
+ L+ LA +D+ L C + T ET I+NAE L + GA L+N G L +
Sbjct: 176 GE----EGLDAFLAQTDI--LVCLLPLTPETRGILNAELLARLPRGAALINVGRGPHLVE 229
Query: 262 CAVKQLLIDGTLAGCALD-------GAEGPQWMEAWVREMPNVLILP 301
+ L G L+G LD A+ P W P V + P
Sbjct: 230 ADLLAALDSGHLSGAVLDVFEQEPLPADHPLW------RHPRVTVTP 270
|
This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306 |
| >gnl|CDD|240637 cd12160, 2-Hacid_dh_3, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 6e-10
Identities = 56/200 (28%), Positives = 86/200 (43%), Gaps = 24/200 (12%)
Query: 118 IADTVMALLLGLLRRTHLLARHALSASGW---LGSVQPL--CRGMRRCRGLVLGIVGRSA 172
+A+ +AL+L +RR + R A W LG +QPL + G + I G +
Sbjct: 95 VAEHTLALILAAVRRLDEM-REAQREHRWAGELGGLQPLRPAGRLTTLLGARVLIWGFGS 153
Query: 173 SARALATRSLSFKMSVLYFDVPEGKG-KVTFPSAARRMDTLNDLLAASDVISLHCAVTDE 231
+ LA + V V G + FP A D L +LL +DV+ + T
Sbjct: 154 IGQRLAPLLTALGARVT--GVARSAGERAGFPVVAE--DELPELLPETDVLVMILPATPS 209
Query: 232 TIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD-------GAEGP 284
T ++AE L + A++VN G +D+ A+ L G L G ALD A P
Sbjct: 210 TAHALDAEVLAALPKHAWVVNVGRGATVDEDALVAALESGRLGGAALDVTATEPLPASSP 269
Query: 285 QWMEAWVREMPNVLILPRSA 304
W + PN+++ P +A
Sbjct: 270 LW------DAPNLILTPHAA 283
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310 |
| >gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 2e-09
Identities = 58/236 (24%), Positives = 100/236 (42%), Gaps = 8/236 (3%)
Query: 69 AYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIA-DTVMALLL 127
AY+ ++ + +L+L G +D AA GL + V S +A D +M +L+
Sbjct: 109 AYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILI 168
Query: 128 GLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMS 187
L R L H + + W +V + G +G VG R L R F +
Sbjct: 169 --LLRNFLPGYHQVVSGEW--NVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCN 224
Query: 188 VLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPG 247
+LY D + ++ + A+ + L+ +L DV+ ++ +T++T + N E + +K G
Sbjct: 225 LLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKG 284
Query: 248 AFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD--GAEGPQWMEAWVREMPNVLILP 301
+VN ++D AV G + G D + W R MPN + P
Sbjct: 285 VLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPW-RYMPNHAMTP 339
|
Length = 386 |
| >gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 1e-08
Identities = 51/244 (20%), Positives = 97/244 (39%), Gaps = 41/244 (16%)
Query: 115 AEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASA 174
+ IA+ ++ +L + + + W + G + +G +
Sbjct: 94 SIPIAEWIVGYILEIYKGLKKAYK-NQKEKKWKMD-----SSLLELYGKTILFLGTGSIG 147
Query: 175 RALATRSLSFKMSVL----------YFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISL 224
+ +A R +F M V+ YFD +P + L+++L +D++
Sbjct: 148 QEIAKRLKAFGMKVIGVNTSGRDVEYFDK-------CYPL-----EELDEVLKEADIVVN 195
Query: 225 HCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE-- 282
+T+ET + + + +K GA +N G +D+ A+ + L + + G ALD E
Sbjct: 196 VLPLTEETHHLFDEAFFEQMKKGALFINVGRGPSVDEDALIEALKNKQIRGAALDVFEEE 255
Query: 283 -----GPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAIS 337
P W ++ NVLI P + SE + D L++F DG + KN +
Sbjct: 256 PLPKDSPLW------DLDNVLITPHISGVSEHFNERLFDIFYENLKSFLEDGELLKNVVD 309
Query: 338 DTEG 341
+G
Sbjct: 310 LNKG 313
|
Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314 |
| >gnl|CDD|183550 PRK12480, PRK12480, D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 5e-08
Identities = 53/252 (21%), Positives = 100/252 (39%), Gaps = 36/252 (14%)
Query: 96 DSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSAS-GWLGSVQPLC 154
D LA + + +V + E IA+ +++ L L+RR + R + W +
Sbjct: 84 DLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMS-- 141
Query: 155 RGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA----RRMD 210
+ + + + I+G A A F ++ +D +P+ D
Sbjct: 142 ---KPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDA--------YPNKDLDFLTYKD 190
Query: 211 TLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270
++ + + +D+ISLH E+ + + H+K GA LVN +++ + + D
Sbjct: 191 SVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVND 250
Query: 271 GTLAGCALDG--AEGPQWMEAWVR------------EMPNVLILPRSADYSEEVWMEI-- 314
GTL G A+D E + W E +L+ P A +S+E +
Sbjct: 251 GTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIAFFSDEAVQNLVE 310
Query: 315 --RDKAISVLQT 324
+ A+SV+ T
Sbjct: 311 GGLNAALSVINT 322
|
Length = 330 |
| >gnl|CDD|181499 PRK08605, PRK08605, D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 24/74 (32%), Positives = 38/74 (51%)
Query: 210 DTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269
DT+ + + +D+++LH T + NA+ +H K GA VN L+D A+ L
Sbjct: 192 DTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALD 251
Query: 270 DGTLAGCALDGAEG 283
+G + G ALD E
Sbjct: 252 NGLIKGAALDTYEF 265
|
Length = 332 |
| >gnl|CDD|240647 cd12170, 2-Hacid_dh_9, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 40/172 (23%), Positives = 71/172 (41%), Gaps = 24/172 (13%)
Query: 162 GLVLGIVGRSASARALATRSLSFKMSVLYF------DVPEGKGKVTFPSAARRMDTLNDL 215
GL +GI+G + + +A F V Y+ D E KG P LN+L
Sbjct: 138 GLKVGIIGLGTTGQMIADALSFFGADVYYYSRTRKPDA-EAKGIRYLP--------LNEL 188
Query: 216 LAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLL--IDGTL 273
L DVI + + ++ E + + G L NT + A+K+ L +
Sbjct: 189 LKTVDVICTC---LPKNVILLGEEEFELLGDGKILFNTSLGPSFEVEALKKWLKASGYNI 245
Query: 274 AGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTF 325
C GA G + + + PNV+ +SA ++ + + + K ++ L+ +
Sbjct: 246 FDCDTAGALGDEELLRY----PNVICTNKSAGWTRQAFERLSQKVLANLEEY 293
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 294 |
| >gnl|CDD|166874 PRK00257, PRK00257, erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 44/148 (29%), Positives = 64/148 (43%), Gaps = 17/148 (11%)
Query: 147 LGSVQPLC--RGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVP--EGKGKVTF 202
LGS+ L G+ G+VG L VL D P E +G F
Sbjct: 100 LGSLLTLAEREGVD-LAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAEGDGDF 158
Query: 203 PSAARRMDTLNDLLAASDVISLHCAVTDE----TIQIINAECLQHIKPGAFLVNTGSSQL 258
S L +L DVISLH +T E T +++ L ++PGA+L+N +
Sbjct: 159 VS-------LERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAV 211
Query: 259 LDDCAVKQLLIDGTLAGCALDGAEG-PQ 285
+D+ A+++ L+ G LD EG PQ
Sbjct: 212 VDNQALREALLSGEDLDAVLDVWEGEPQ 239
|
Length = 381 |
| >gnl|CDD|240643 cd12166, 2-Hacid_dh_7, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 5e-05
Identities = 75/285 (26%), Positives = 103/285 (36%), Gaps = 58/285 (20%)
Query: 39 AGVALVEHVPLGRLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSA 98
GV +V G D + V + A A R L +++ L + V
Sbjct: 18 PGVEVVVWDGEGPPPDAAADVEFVVPPYMAAPPVLEALRALPRLRVVQTLSAGYDGVLPL 77
Query: 99 LAADLGL---RLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCR 155
L + L R +H D S AE +AL+L LR R A + W P
Sbjct: 78 LPEGVTLCNARGVH-DASTAE----LAVALILASLRGLPRFVR-AQARGRWEPRRTPSLA 131
Query: 156 GMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR------- 208
R VL IVG + RA+ R F++ V AR
Sbjct: 132 DRR-----VL-IVGYGSIGRAIERRLAPFEVRVTRV--------------ARTARPGEQV 171
Query: 209 --MDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQ 266
+D L LL +DV+ L +TDET +++AE L + GA LVN ++D A
Sbjct: 172 HGIDELPALLPEADVVVLIVPLTDETRGLVDAEFLARMPDGALLVNVARGPVVDTDA--- 228
Query: 267 LLIDGTLAG---CALD-------GAEGPQWMEAWVREMPNVLILP 301
L+ +G ALD P W P VLI P
Sbjct: 229 -LVAELASGRLRAALDVTDPEPLPPGHPLW------SAPGVLITP 266
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 300 |
| >gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.003
Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 2/124 (1%)
Query: 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDV 221
G + +VG + A VL D+ + + ++ L + LA +DV
Sbjct: 160 GKTVVVVGAGVVGKEAAQMLRGLGAQVLITDINVEALEQLEELGGKNVEELEEALAEADV 219
Query: 222 ISLHCAVTDETIQIIN-AECLQHIKPGAFLVNTGSSQLLDDCAV-KQLLIDGTLAGCALD 279
I + + I+ E ++ +KPG+ +VN + A+ QLL +G D
Sbjct: 220 IVTTTLLPGKRAGILVPEELVEQMKPGSVIVNVAVGAVGCVQALHTQLLEEGHGVVHYGD 279
Query: 280 GAEG 283
Sbjct: 280 VNMP 283
|
The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 620 | |||
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 100.0 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 100.0 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 100.0 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 100.0 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 100.0 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 100.0 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 100.0 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 100.0 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 100.0 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 100.0 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 100.0 | |
| PLN02928 | 347 | oxidoreductase family protein | 100.0 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 100.0 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 100.0 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 100.0 | |
| KOG0068 | 406 | consensus D-3-phosphoglycerate dehydrogenase, D-is | 100.0 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 100.0 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 100.0 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 100.0 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 100.0 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 100.0 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 100.0 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 100.0 | |
| KOG0067 | 435 | consensus Transcription factor CtBP [Transcription | 100.0 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 99.79 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 99.75 | |
| PF00389 | 133 | 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydr | 99.72 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 99.54 | |
| PLN02494 | 477 | adenosylhomocysteinase | 99.53 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 99.41 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 99.41 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.39 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 99.32 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 99.22 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 99.21 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 99.2 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 99.18 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.18 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.11 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 99.09 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.05 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 99.01 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 99.0 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 98.97 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 98.95 | |
| PLN02712 | 667 | arogenate dehydrogenase | 98.95 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 98.91 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 98.91 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 98.9 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 98.89 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 98.88 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 98.86 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 98.84 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 98.8 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 98.78 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 98.78 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 98.72 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.71 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 98.71 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.69 | |
| PLN02712 | 667 | arogenate dehydrogenase | 98.69 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 98.68 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 98.68 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 98.65 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 98.64 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.61 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 98.61 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 98.58 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.57 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.57 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 98.55 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 98.53 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.52 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 98.5 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 98.47 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 98.46 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 98.46 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 98.46 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 98.46 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 98.46 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 98.44 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 98.43 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.42 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 98.42 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 98.4 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 98.38 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.37 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 98.37 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 98.35 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 98.34 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.34 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.33 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 98.32 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 98.32 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 98.29 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.27 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 98.27 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 98.25 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 98.23 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.21 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 98.19 | |
| KOG1370 | 434 | consensus S-adenosylhomocysteine hydrolase [Coenzy | 98.17 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 98.16 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.15 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 98.14 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 98.13 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 98.12 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 98.11 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 98.04 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 98.04 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.02 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 97.98 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 97.93 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 97.93 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 97.92 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 97.91 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 97.91 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 97.82 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 97.81 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 97.81 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.8 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 97.77 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 97.77 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 97.76 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.74 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 97.74 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.73 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 97.69 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.69 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.68 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 97.68 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 97.67 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 97.66 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 97.66 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 97.64 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 97.64 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 97.61 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 97.61 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 97.6 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 97.59 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 97.58 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.53 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 97.53 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 97.51 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 97.5 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.48 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.45 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 97.45 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 97.44 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.44 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 97.43 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.42 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.42 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.41 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 97.4 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.39 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 97.38 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.38 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 97.37 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.36 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.36 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 97.36 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 97.34 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.34 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.33 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 97.32 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.31 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.31 | |
| PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.3 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 97.3 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 97.3 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 97.28 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 97.23 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 97.23 | |
| PRK14184 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.22 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.22 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.21 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 97.2 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 97.19 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 97.16 | |
| PRK14185 | 293 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.15 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.13 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 97.12 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 97.11 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.1 | |
| KOG0067 | 435 | consensus Transcription factor CtBP [Transcription | 97.08 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 97.07 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 97.07 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 97.06 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 97.06 | |
| PRK14167 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.05 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 97.03 | |
| PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.02 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 97.02 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 97.01 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 96.99 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 96.98 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 96.98 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 96.97 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 96.92 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 96.91 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 96.88 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 96.88 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 96.84 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 96.84 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 96.82 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 96.82 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 96.8 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 96.76 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 96.76 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 96.74 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 96.71 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 96.68 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 96.6 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 96.57 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 96.57 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 96.56 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 96.55 | |
| cd05313 | 254 | NAD_bind_2_Glu_DH NAD(P) binding domain of glutama | 96.51 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 96.49 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 96.48 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 96.46 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 96.41 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 96.4 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 96.39 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 96.36 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.35 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 96.33 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 96.32 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 96.32 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 96.32 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 96.31 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 96.26 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 96.26 | |
| PRK14030 | 445 | glutamate dehydrogenase; Provisional | 96.26 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 96.25 | |
| PLN02477 | 410 | glutamate dehydrogenase | 96.23 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 96.22 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.2 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 96.19 | |
| PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 96.17 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 96.14 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 96.13 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 96.13 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 96.09 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 96.02 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.99 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 95.97 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.97 | |
| PF00185 | 158 | OTCace: Aspartate/ornithine carbamoyltransferase, | 95.94 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 95.82 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 95.8 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 95.78 | |
| TIGR02964 | 246 | xanthine_xdhC xanthine dehydrogenase accessory pro | 95.77 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 95.76 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 95.76 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 95.76 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 95.59 | |
| PRK14031 | 444 | glutamate dehydrogenase; Provisional | 95.58 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 95.52 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 95.47 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 95.46 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 95.46 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 95.46 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 95.4 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 95.38 | |
| TIGR00658 | 304 | orni_carb_tr ornithine carbamoyltransferase. Most | 95.34 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 95.31 | |
| PRK00779 | 304 | ornithine carbamoyltransferase; Provisional | 95.3 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 95.28 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 95.21 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 95.2 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 95.19 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 95.15 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 95.12 | |
| PF13478 | 136 | XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2 | 95.02 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.0 | |
| PRK00856 | 305 | pyrB aspartate carbamoyltransferase catalytic subu | 94.99 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 94.95 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 94.92 | |
| PF00208 | 244 | ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val | 94.91 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 94.89 | |
| TIGR00670 | 301 | asp_carb_tr aspartate carbamoyltransferase. Ornith | 94.88 | |
| PRK01713 | 334 | ornithine carbamoyltransferase; Provisional | 94.86 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 94.86 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.86 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 94.77 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 94.76 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 94.75 | |
| PRK13814 | 310 | pyrB aspartate carbamoyltransferase catalytic subu | 94.74 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 94.74 | |
| PRK08223 | 287 | hypothetical protein; Validated | 94.72 | |
| COG5322 | 351 | Predicted dehydrogenase [General function predicti | 94.69 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 94.69 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 94.66 | |
| PRK02255 | 338 | putrescine carbamoyltransferase; Provisional | 94.53 | |
| TIGR03316 | 357 | ygeW probable carbamoyltransferase YgeW. Members o | 94.52 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 94.52 | |
| PRK02102 | 331 | ornithine carbamoyltransferase; Validated | 94.46 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 94.46 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 94.45 | |
| cd05312 | 279 | NAD_bind_1_malic_enz NAD(P) binding domain of mali | 94.42 | |
| PLN02602 | 350 | lactate dehydrogenase | 94.41 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.33 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 94.33 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 94.32 | |
| PLN02527 | 306 | aspartate carbamoyltransferase | 94.3 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 94.27 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 94.24 | |
| PTZ00079 | 454 | NADP-specific glutamate dehydrogenase; Provisional | 94.22 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 94.19 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 94.18 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 94.18 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 94.16 | |
| PLN02342 | 348 | ornithine carbamoyltransferase | 94.14 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.13 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 94.1 | |
| COG0334 | 411 | GdhA Glutamate dehydrogenase/leucine dehydrogenase | 94.06 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.03 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 94.03 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 94.03 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 94.03 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 94.01 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 93.99 | |
| PRK04284 | 332 | ornithine carbamoyltransferase; Provisional | 93.97 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 93.96 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 93.94 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 93.89 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 93.89 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 93.81 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 93.8 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 93.75 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.71 | |
| PLN00106 | 323 | malate dehydrogenase | 93.71 | |
| PRK07411 | 390 | hypothetical protein; Validated | 93.67 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 93.59 | |
| PRK03515 | 336 | ornithine carbamoyltransferase subunit I; Provisio | 93.56 | |
| TIGR01381 | 664 | E1_like_apg7 E1-like protein-activating enzyme Gsa | 93.56 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 93.55 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 93.51 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 93.47 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 93.43 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 93.38 | |
| PLN02948 | 577 | phosphoribosylaminoimidazole carboxylase | 93.38 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 93.36 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.36 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 93.33 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 93.32 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 93.31 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 93.29 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 93.25 | |
| PRK10637 | 457 | cysG siroheme synthase; Provisional | 93.2 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 93.2 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 93.16 | |
| PRK12562 | 334 | ornithine carbamoyltransferase subunit F; Provisio | 93.15 | |
| PRK11891 | 429 | aspartate carbamoyltransferase; Provisional | 93.12 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 93.07 | |
| PRK07232 | 752 | bifunctional malic enzyme oxidoreductase/phosphotr | 93.07 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.05 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 93.01 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.99 | |
| TIGR01161 | 352 | purK phosphoribosylaminoimidazole carboxylase, Pur | 92.98 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 92.97 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 92.95 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 92.87 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 92.76 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 92.65 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 92.64 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 92.6 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 92.6 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 92.58 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 92.49 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 92.46 | |
| cd00257 | 119 | Fascin Fascin-like domain; members include actin-b | 92.46 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 92.41 | |
| COG0281 | 432 | SfcA Malic enzyme [Energy production and conversio | 92.36 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 92.34 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 92.3 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 92.29 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 92.28 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 92.27 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 92.22 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 92.22 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 92.18 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 92.09 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 92.04 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 92.03 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 92.02 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 92.02 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 91.93 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 91.89 | |
| PRK01368 | 454 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.89 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 91.85 | |
| PRK03806 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.83 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.71 | |
| PRK08192 | 338 | aspartate carbamoyltransferase; Provisional | 91.7 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 91.66 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 91.63 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 91.62 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.57 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 91.45 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 91.43 | |
| cd00762 | 254 | NAD_bind_malic_enz NAD(P) binding domain of malic | 91.4 | |
| cd05283 | 337 | CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam | 91.29 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 91.24 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 91.23 | |
| PRK12862 | 763 | malic enzyme; Reviewed | 91.15 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 91.04 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 90.96 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 90.87 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 90.87 | |
| TIGR01532 | 325 | E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas | 90.82 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 90.74 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 90.73 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 90.73 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 90.72 | |
| PF04016 | 147 | DUF364: Domain of unknown function (DUF364); Inter | 90.7 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 90.68 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 90.66 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 90.64 | |
| KOG4230 | 935 | consensus C1-tetrahydrofolate synthase [Coenzyme t | 90.53 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 90.44 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 90.38 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 90.19 | |
| PF05222 | 136 | AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal | 90.14 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 90.12 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 90.05 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 89.98 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 89.91 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 89.91 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 89.88 | |
| PRK04663 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 89.82 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 89.8 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 89.79 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 89.74 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 89.73 | |
| PRK12861 | 764 | malic enzyme; Reviewed | 89.73 | |
| COG0540 | 316 | PyrB Aspartate carbamoyltransferase, catalytic cha | 89.72 | |
| PRK13376 | 525 | pyrB bifunctional aspartate carbamoyltransferase c | 89.71 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 89.7 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 89.69 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 89.61 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 89.59 | |
| cd01490 | 435 | Ube1_repeat2 Ubiquitin activating enzyme (E1), rep | 89.56 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 89.54 | |
| TIGR01142 | 380 | purT phosphoribosylglycinamide formyltransferase 2 | 89.51 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 89.47 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 89.46 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 89.43 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 89.3 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 89.3 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 89.24 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 89.21 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 89.15 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 89.05 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 89.0 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 88.82 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 88.81 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 88.72 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 88.72 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 88.71 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 88.71 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 88.58 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 88.56 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 88.45 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 88.4 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 88.31 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 88.25 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 88.13 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 88.12 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 88.12 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 88.11 | |
| PRK03815 | 401 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 88.11 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 88.1 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 88.05 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 88.04 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 88.02 | |
| PRK13529 | 563 | malate dehydrogenase; Provisional | 88.02 | |
| COG3288 | 356 | PntA NAD/NADP transhydrogenase alpha subunit [Ener | 87.99 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 87.97 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 87.93 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 87.92 | |
| PRK14804 | 311 | ornithine carbamoyltransferase; Provisional | 87.84 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 87.76 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 87.76 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 87.7 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 87.66 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 87.65 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 87.54 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 87.52 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 87.49 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 87.45 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 87.4 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 87.37 | |
| cd01488 | 291 | Uba3_RUB Ubiquitin activating enzyme (E1) subunit | 87.34 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 87.31 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 87.28 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 87.25 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 87.25 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 87.19 |
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-64 Score=531.62 Aligned_cols=281 Identities=25% Similarity=0.351 Sum_probs=256.0
Q ss_pred ccccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhcc
Q 007040 54 DGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRT 133 (620)
Q Consensus 54 e~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl 133 (620)
.+.+.++|++++ +.+++++++++++|+||||+++|+|+|+||+++++++||.|+|+|++|+.+||||+++++|+++|++
T Consensus 40 ~~~~~~~d~~~~-~~~~v~~~~l~~~~~Lk~I~~~g~Gvd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~ 118 (324)
T COG0111 40 LEALADADALIV-SVTPVTEEVLAAAPNLKAIGRAGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRI 118 (324)
T ss_pred HhhcccCcEEEE-ecCCCCHHHHhhCCCceEEEEccccccccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCc
Confidence 356889999888 7889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHH
Q 007040 134 HLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLN 213 (620)
Q Consensus 134 ~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~ 213 (620)
+.++..+ +++.|.... ....+|+|+||||||+|+||+.+|++|++|||+|++|||+..... ....++...++|+
T Consensus 119 ~~~~~~~-~~g~W~~~~----~~g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~-~~~~~~~~~~~Ld 192 (324)
T COG0111 119 PDADASQ-RRGEWDRKA----FRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRER-AGVDGVVGVDSLD 192 (324)
T ss_pred hhhHHHH-HcCCccccc----cccccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhh-hccccceecccHH
Confidence 9999875 999998621 233589999999999999999999999999999999999664432 2334566778999
Q ss_pred hhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCC-CCCCCcccc
Q 007040 214 DLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVR 292 (620)
Q Consensus 214 eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~-P~~~~spL~ 292 (620)
++|++||||++|+|+|++|+||||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++ |++.++|||
T Consensus 193 ~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~ 272 (324)
T COG0111 193 ELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLW 272 (324)
T ss_pred HHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997 777889999
Q ss_pred CCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCC---CCccccCCCCc
Q 007040 293 EMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVI---PKNAISDTEGC 342 (620)
Q Consensus 293 ~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~---p~nvVn~~~~y 342 (620)
++|||++|||+|+.|.|+.+++...+++|+.+|+ +|.. +.+.|+...+|
T Consensus 273 ~~pnV~~TPHia~~T~ea~~~~~~~~~~~i~~~l-~g~~~~~~~~~v~~~~~~ 324 (324)
T COG0111 273 DLPNVILTPHIGGSTDEAQERVAEIVAENIVRYL-AGGPVVNNAPEVDLERGY 324 (324)
T ss_pred cCCCeEECCcccccCHHHHHHHHHHHHHHHHHHH-cCCCCCCCccccccccCC
Confidence 9999999999999999999999999999999996 7877 45556555554
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-63 Score=521.80 Aligned_cols=314 Identities=25% Similarity=0.309 Sum_probs=267.4
Q ss_pred CCCEEEEeCCCCCChhHHhhccCCceEEecCC-CCCc----ccccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccC
Q 007040 18 PLPSVVALNCIEDCVLEQDSLAGVALVEHVPL-GRLA----DGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSD 92 (620)
Q Consensus 18 ~kPkVvvL~~~ed~~~~~~~L~~l~~v~~~~~-~~l~----e~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~ 92 (620)
++++|++...+.. ...+.|+...++..++. ...+ .+.+.++|++++.. .++++++++++|+||+|++.|+|+
T Consensus 1 ~~~~vl~~~~~~~--~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~ad~li~~~-~~~~~~~l~~~p~Lk~I~~~g~G~ 77 (323)
T PRK15409 1 MKPSVILYKALPD--DLLQRLEEHFTVTQVANLSPETVEQHAAAFAEAEGLLGSG-EKVDAALLEKMPKLRAASTISVGY 77 (323)
T ss_pred CCceEEEeCCCCH--HHHHHHHhcCcEEEcCCCCCCCHHHHHHHhcCCeEEEEcC-CCCCHHHHhhCCCCeEEEECceec
Confidence 3578888876532 23345555455544431 1111 24578899988754 479999999999999999999999
Q ss_pred CccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCCh
Q 007040 93 RTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSA 172 (620)
Q Consensus 93 D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~ 172 (620)
|+||+++|.++||.|+|+|++++++||||++++||+++|+++.+++. ++++.|....... ....+|+|+||||||+|+
T Consensus 78 d~id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~-~~~g~w~~~~~~~-~~g~~L~gktvGIiG~G~ 155 (323)
T PRK15409 78 DNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAER-VKAGEWTASIGPD-WFGTDVHHKTLGIVGMGR 155 (323)
T ss_pred ccccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHH-HHcCCCcccCccc-cccCCCCCCEEEEEcccH
Confidence 99999999999999999999999999999999999999999999887 5889996432111 123589999999999999
Q ss_pred hhHHHHHHHh-hCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEE
Q 007040 173 SARALATRSL-SFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLV 251 (620)
Q Consensus 173 IG~~vA~~Lk-afG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLI 251 (620)
||+.+|++|+ +|||+|++||++..... ....+.. ..+|++++++||+|++|||+|++|+||||++.|++||||++||
T Consensus 156 IG~~va~~l~~~fgm~V~~~~~~~~~~~-~~~~~~~-~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lI 233 (323)
T PRK15409 156 IGMALAQRAHFGFNMPILYNARRHHKEA-EERFNAR-YCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFI 233 (323)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCchhh-HHhcCcE-ecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEE
Confidence 9999999998 99999999998753322 1122333 4599999999999999999999999999999999999999999
Q ss_pred EcCCChhhcHHHHHHHHHcCCcceeEeecCCC-CCCCCccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCC
Q 007040 252 NTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGV 330 (620)
Q Consensus 252 NvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~-P~~~~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~ 330 (620)
|+|||++||++||++||++|+|+||+||||++ |++.++|||++|||++|||+||+|.+++.++...+++||.+|+ .|+
T Consensus 234 N~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~-~g~ 312 (323)
T PRK15409 234 NAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYNMAACAVDNLIDAL-QGK 312 (323)
T ss_pred ECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHHHHHHHHHHHHHHHHH-cCC
Confidence 99999999999999999999999999999996 6678999999999999999999999999999999999999997 888
Q ss_pred CCCccccCC
Q 007040 331 IPKNAISDT 339 (620)
Q Consensus 331 ~p~nvVn~~ 339 (620)
+|.++||++
T Consensus 313 ~~~~~vn~~ 321 (323)
T PRK15409 313 VEKNCVNPQ 321 (323)
T ss_pred CCCcccCcc
Confidence 899999864
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-63 Score=520.25 Aligned_cols=315 Identities=30% Similarity=0.390 Sum_probs=270.0
Q ss_pred CCEEEEeCCCCCChhHHhhccCCceEEecCCC--CCc--ccccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCCc
Q 007040 19 LPSVVALNCIEDCVLEQDSLAGVALVEHVPLG--RLA--DGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRT 94 (620)
Q Consensus 19 kPkVvvL~~~ed~~~~~~~L~~l~~v~~~~~~--~l~--e~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D~ 94 (620)
|++++....+++. ..+.+....++..+... ..+ .+.+++++++++.....++.++++++|+||+|+..|+||||
T Consensus 2 k~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~l~~~p~LKlIa~~~~G~D~ 79 (324)
T COG1052 2 KIVVLSTRKLPPE--VLERLKEKFEVERYEDDLTPDTELAERLKDADAVITFVNDRIDAEVLEKLPGLKLIATRSAGYDN 79 (324)
T ss_pred CcEEEecCcCCHH--HHHHhhccEEEEEeccCCccchHHHHHhcCCcEEEEcCCCCcCHHHHHhCCCcEEEEEeccccCc
Confidence 5565555544332 33444444555555422 222 45678999999887779999999999999999999999999
Q ss_pred cchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhh
Q 007040 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASA 174 (620)
Q Consensus 95 VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG 174 (620)
||+++|+++||.|+|+|++++++||||+|+|||++.|++..+++. .++|.|.....+....+.+++|+|+||||+|+||
T Consensus 80 vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~-~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG 158 (324)
T COG1052 80 VDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRR-VREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIG 158 (324)
T ss_pred ccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHH-HhcCcccccCCcccccccCCCCCEEEEECCCHHH
Confidence 999999999999999999999999999999999999999999997 6899997653122233468999999999999999
Q ss_pred HHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcC
Q 007040 175 RALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 175 ~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvg 254 (620)
+++|+++++|||+|+|||+++. .......+..+. +|++++++||+|++|||+|++|+||||++.|++||+|++|||+|
T Consensus 159 ~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~-~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNta 236 (324)
T COG1052 159 QAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYV-DLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTA 236 (324)
T ss_pred HHHHHHHhcCCCEEEEECCCCC-hHHHhhcCceec-cHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECC
Confidence 9999999999999999999985 222222334455 49999999999999999999999999999999999999999999
Q ss_pred CChhhcHHHHHHHHHcCCcceeEeecCCCCCC-CCccccCCCc---EEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCC
Q 007040 255 SSQLLDDCAVKQLLIDGTLAGCALDGAEGPQW-MEAWVREMPN---VLILPRSADYSEEVWMEIRDKAISVLQTFFFDGV 330 (620)
Q Consensus 255 RG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~-~~spL~~~pN---VIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~ 330 (620)
||++||++||++||++|+|+||+|||||.+|. .++||+.++| |++|||+|++|.+++.+|...+++||.+|+ +|+
T Consensus 237 RG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~ea~~~m~~~~~~nl~~~~-~g~ 315 (324)
T COG1052 237 RGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAELALENLEAFF-DGG 315 (324)
T ss_pred CccccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHHHHHHHHHHHHHHHHHHH-cCC
Confidence 99999999999999999999999999998555 6899998888 999999999999999999999999999997 888
Q ss_pred CCCccccCC
Q 007040 331 IPKNAISDT 339 (620)
Q Consensus 331 ~p~nvVn~~ 339 (620)
.|.+.|+++
T Consensus 316 ~~~~~v~~~ 324 (324)
T COG1052 316 VPPNEVNPE 324 (324)
T ss_pred CCCCCCCCC
Confidence 899998863
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-61 Score=508.10 Aligned_cols=300 Identities=21% Similarity=0.300 Sum_probs=253.7
Q ss_pred EEEeCCCCCChhHHhhccCCceEEecCCC--CCcccccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCCccchHH
Q 007040 22 VVALNCIEDCVLEQDSLAGVALVEHVPLG--RLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSAL 99 (620)
Q Consensus 22 VvvL~~~ed~~~~~~~L~~l~~v~~~~~~--~l~e~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D~VD~~a 99 (620)
|++++.........+.|+...++..+... +...+.+.++|+++++ ..++++++++++|+||||++.|+|+|+||+++
T Consensus 3 i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~ 81 (311)
T PRK08410 3 IVILDAKTLGDKDLSVFEEFGDFQIYPTTSPEEVIERIKDANIIITN-KVVIDKEVLSQLPNLKLICITATGTNNVDIEY 81 (311)
T ss_pred EEEEecCCCChhhHHHHhhCceEEEeCCCCHHHHHHHhCCCCEEEEC-CCCCCHHHHhhCCCCeEEEEcccccccccHHH
Confidence 55554422222334556555555544321 1123467889988876 45799999999999999999999999999999
Q ss_pred HHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCC--CCCcceeecCcEEEEEeCChhhHHH
Q 007040 100 AADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQP--LCRGMRRCRGLVLGIVGRSASARAL 177 (620)
Q Consensus 100 a~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~--~~~~~~~L~GktVGIIGlG~IG~~v 177 (620)
|+++||.|+|+||+++.+||||+++|||+++|+++.+++. ++++.|...... ....+++|+|+||||||+|+||+.+
T Consensus 82 ~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~-~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~v 160 (311)
T PRK08410 82 AKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRY-VKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRV 160 (311)
T ss_pred HHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHH-HHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHH
Confidence 9999999999999999999999999999999999999887 588999743211 1112468999999999999999999
Q ss_pred HHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCCh
Q 007040 178 ATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 178 A~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~ 257 (620)
|+++++|||+|++|||+..... .+. ...+|++++++||+|++|||+|++|+||||++.|++||||++|||+|||+
T Consensus 161 A~~~~~fgm~V~~~d~~~~~~~----~~~-~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~ 235 (311)
T PRK08410 161 AKIAQAFGAKVVYYSTSGKNKN----EEY-ERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGG 235 (311)
T ss_pred HHHHhhcCCEEEEECCCccccc----cCc-eeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCcc
Confidence 9999999999999999753321 122 34589999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHcCCcceeEeecCCC-CCCCCccccCC---CcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCC
Q 007040 258 LLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREM---PNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGV 330 (620)
Q Consensus 258 vVDe~AL~~AL~~G~I~GAaLDV~E~-P~~~~spL~~~---pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~ 330 (620)
+||++||++||++|+|+ |+||||++ |++.++|||.+ ||||+|||+||+|.++..++...+++||.+|+ +|+
T Consensus 236 vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e~~~~~~~~~~~nl~~~~-~g~ 310 (311)
T PRK08410 236 IVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKEARKTLIEKVKENIKDFL-EGG 310 (311)
T ss_pred ccCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHH-cCC
Confidence 99999999999999999 99999996 67788999987 89999999999999999999999999999997 554
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-61 Score=509.39 Aligned_cols=316 Identities=23% Similarity=0.273 Sum_probs=266.8
Q ss_pred CCEEEEeCCCCCChhHHhhccCCceEEecCCC-CCc----ccccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCC
Q 007040 19 LPSVVALNCIEDCVLEQDSLAGVALVEHVPLG-RLA----DGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDR 93 (620)
Q Consensus 19 kPkVvvL~~~ed~~~~~~~L~~l~~v~~~~~~-~l~----e~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D 93 (620)
+|+|++...++. ...+.|+...++..+... ... .+.++++|++++....++++++++++|+||||+++|+|+|
T Consensus 2 ~~kil~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~~G~d 79 (333)
T PRK13243 2 KPKVFITREIPE--NGIEMLEEHFEVEVWEDEREIPREVLLEKVRDVDALVTMLSERIDCEVFEAAPRLRIVANYAVGYD 79 (333)
T ss_pred CceEEEECCCCH--HHHHHHhcCceEEEecCCCCCCHHHHHHHhCCCcEEEEeCCCCCCHHHHhhCCCCeEEEecCcccc
Confidence 577877765432 223345544445433211 111 2457889999887666899999999999999999999999
Q ss_pred ccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCC---CCCCcceeecCcEEEEEeC
Q 007040 94 TVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQ---PLCRGMRRCRGLVLGIVGR 170 (620)
Q Consensus 94 ~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~---~~~~~~~~L~GktVGIIGl 170 (620)
+||+++|.++||.|+|+||+++.+||||++++||+++|+++.+++. .+++.|..... +....+.+|+|++|||||+
T Consensus 80 ~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~-~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~ 158 (333)
T PRK13243 80 NIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHF-VRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGF 158 (333)
T ss_pred ccCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHH-HHcCCCCccccccccccccccCCCCCEEEEECc
Confidence 9999999999999999999999999999999999999999999887 58899974311 1111236899999999999
Q ss_pred ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEE
Q 007040 171 SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFL 250 (620)
Q Consensus 171 G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiL 250 (620)
|+||+.+|++|++|||+|++||++..... ....+. ...++++++++||+|++|+|+|++|+++|+++.|++||+|++|
T Consensus 159 G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~~~-~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~l 236 (333)
T PRK13243 159 GRIGQAVARRAKGFGMRILYYSRTRKPEA-EKELGA-EYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAIL 236 (333)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCChhh-HHHcCC-EecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEE
Confidence 99999999999999999999999864322 112233 3458999999999999999999999999999999999999999
Q ss_pred EEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCC
Q 007040 251 VNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGV 330 (620)
Q Consensus 251 INvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~ 330 (620)
||+|||++||++||+++|++|+|+||+||||++||++++|||++||||+|||+||+|.+++.++.+.+++||.+|+ +|+
T Consensus 237 IN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~-~g~ 315 (333)
T PRK13243 237 VNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIGSATFEAREGMAELVAENLIAFK-RGE 315 (333)
T ss_pred EECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCCCchhhcCCCEEECCcCCcCHHHHHHHHHHHHHHHHHHHH-cCC
Confidence 9999999999999999999999999999999975545899999999999999999999999999999999999996 898
Q ss_pred CCCccccCCC
Q 007040 331 IPKNAISDTE 340 (620)
Q Consensus 331 ~p~nvVn~~~ 340 (620)
+|.|+||.+.
T Consensus 316 ~~~~~v~~~~ 325 (333)
T PRK13243 316 VPPTLVNREV 325 (333)
T ss_pred CCCcccCHHH
Confidence 8999998543
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-61 Score=505.97 Aligned_cols=272 Identities=28% Similarity=0.383 Sum_probs=243.8
Q ss_pred cccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccH
Q 007040 55 GKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTH 134 (620)
Q Consensus 55 ~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~ 134 (620)
+.+.++|+++++. .++++++++++|+||||+++|+|+|+||+++|.++||.|+|+||+++.+||||++++||+++|++.
T Consensus 41 ~~~~~~d~~i~~~-~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~ 119 (317)
T PRK06487 41 ERLRGAQVAISNK-VALDAAALAAAPQLKLILVAATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLP 119 (317)
T ss_pred HHhCCCeEEEEeC-CCCCHHHHhhCCCCeEEEEcCccccccCHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHH
Confidence 5678899887764 479999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCC--CCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCH
Q 007040 135 LLARHALSASGWLGSVQP--LCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTL 212 (620)
Q Consensus 135 ~~~~~~~~~g~W~~~~~~--~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL 212 (620)
.++.. ++++.|...... ......+|.|+||||||+|+||+.+|++|++|||+|++||++..... . ...+|
T Consensus 120 ~~~~~-~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~~~------~-~~~~l 191 (317)
T PRK06487 120 DYQQA-VAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPAR------P-DRLPL 191 (317)
T ss_pred HHHHH-HHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCccc------c-cccCH
Confidence 99887 588999753211 11223689999999999999999999999999999999998743211 1 13589
Q ss_pred HhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCC-CCCCCccc
Q 007040 213 NDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWV 291 (620)
Q Consensus 213 ~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~-P~~~~spL 291 (620)
++++++||+|++|||+|++|+||||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++ |++.++||
T Consensus 192 ~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl 271 (317)
T PRK06487 192 DELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPL 271 (317)
T ss_pred HHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996 66778999
Q ss_pred cC--CCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q 007040 292 RE--MPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAIS 337 (620)
Q Consensus 292 ~~--~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~p~nvVn 337 (620)
|+ +|||++|||+||+|.+++.++...+++||.+|+ .|+ |.++||
T Consensus 272 ~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~-~g~-~~~~v~ 317 (317)
T PRK06487 272 LAPDIPRLIVTPHSAWGSREARQRIVGQLAENARAFF-AGK-PLRVVS 317 (317)
T ss_pred hhcCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHH-cCC-CCcCCC
Confidence 95 899999999999999999999999999999997 787 556664
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-60 Score=499.03 Aligned_cols=268 Identities=25% Similarity=0.387 Sum_probs=239.6
Q ss_pred cccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccH
Q 007040 55 GKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTH 134 (620)
Q Consensus 55 ~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~ 134 (620)
+.++++|++++. ..++++++++++|+||||++.|+|+|+||+++|.++||.|+|+||+++.+||||++++||+++|+++
T Consensus 40 ~~~~~~d~ii~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l~l~~~R~~~ 118 (314)
T PRK06932 40 ERAKDADIVITS-KVLFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALKHSLM 118 (314)
T ss_pred HHhCCCcEEEEe-CCCCCHHHHhhCcCCeEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHHHHHHHHhChH
Confidence 467889987764 4579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCC--CCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCH
Q 007040 135 LLARHALSASGWLGSVQP--LCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTL 212 (620)
Q Consensus 135 ~~~~~~~~~g~W~~~~~~--~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL 212 (620)
.+++. .+++.|...... ....+.+|+|+||||||+|.||+.+|+++++|||+|++||++.... .. ....+|
T Consensus 119 ~~~~~-~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~---~~---~~~~~l 191 (314)
T PRK06932 119 GWYRD-QLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASV---CR---EGYTPF 191 (314)
T ss_pred HHHHH-HHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccc---cc---cccCCH
Confidence 99887 478899643211 0123368999999999999999999999999999999999764211 11 124589
Q ss_pred HhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCC-CCCCCccc
Q 007040 213 NDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWV 291 (620)
Q Consensus 213 ~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~-P~~~~spL 291 (620)
++++++||+|++|||+|++|+||||++.|++||||++|||+|||++||++||++||++|+|+||+||||++ |++.++||
T Consensus 192 ~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~~~~pl 271 (314)
T PRK06932 192 EEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPL 271 (314)
T ss_pred HHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCCCCCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996 66788999
Q ss_pred c----CCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCC
Q 007040 292 R----EMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGV 330 (620)
Q Consensus 292 ~----~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~ 330 (620)
| ++|||++|||+||+|.++++++.+.+++||.+|+..|+
T Consensus 272 ~~~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g~ 314 (314)
T PRK06932 272 IQAAKRLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQGK 314 (314)
T ss_pred hHhhcCCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 8 59999999999999999999999999999999986553
|
|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-59 Score=509.52 Aligned_cols=309 Identities=26% Similarity=0.298 Sum_probs=263.2
Q ss_pred CCCEEEEeCCCCCChhHHhhccCC-c-eEEecCCCC---CcccccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccC
Q 007040 18 PLPSVVALNCIEDCVLEQDSLAGV-A-LVEHVPLGR---LADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSD 92 (620)
Q Consensus 18 ~kPkVvvL~~~ed~~~~~~~L~~l-~-~v~~~~~~~---l~e~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~ 92 (620)
.+.+|++++.+. ....+.|... . ++..+.... ...+.+.++|++++.+...+++++++++|+||||+++|+|+
T Consensus 9 ~~~~ili~~~~~--~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~ 86 (409)
T PRK11790 9 DKIKFLLLEGVH--QSAVEVLRAAGYTNIEYHKGALDEEELIEAIKDAHFIGIRSRTQLTEEVLAAAEKLVAIGCFCIGT 86 (409)
T ss_pred CCeEEEEECCCC--HHHHHHHHhcCCceEEECCCCCCHHHHHHHcCCCCEEEEeCCCCCCHHHHhhCCCCeEEEECceec
Confidence 345777776443 2223344432 2 554442211 11245788999877776789999999999999999999999
Q ss_pred CccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCCh
Q 007040 93 RTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSA 172 (620)
Q Consensus 93 D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~ 172 (620)
|+||+++|+++||.|+|+||+++.+||||++++||+++|+++.+++. .+++.|.... ..+.+|.|+||||||+|+
T Consensus 87 d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~-~~~g~w~~~~----~~~~~L~gktvGIiG~G~ 161 (409)
T PRK11790 87 NQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAK-AHRGGWNKSA----AGSFEVRGKTLGIVGYGH 161 (409)
T ss_pred ccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHH-HHcCcccccc----cCcccCCCCEEEEECCCH
Confidence 99999999999999999999999999999999999999999998887 5789997532 123689999999999999
Q ss_pred hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEE
Q 007040 173 SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVN 252 (620)
Q Consensus 173 IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLIN 252 (620)
||+.+|+++++|||+|++||++..... .++....+|++++++||+|++|||+|++|+||||++.|++||+|++|||
T Consensus 162 IG~~vA~~~~~fGm~V~~~d~~~~~~~----~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN 237 (409)
T PRK11790 162 IGTQLSVLAESLGMRVYFYDIEDKLPL----GNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILIN 237 (409)
T ss_pred HHHHHHHHHHHCCCEEEEECCCccccc----CCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEE
Confidence 999999999999999999998753211 1234456899999999999999999999999999999999999999999
Q ss_pred cCCChhhcHHHHHHHHHcCCcceeEeecCCC-CCCC----CccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHH
Q 007040 253 TGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWM----EAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFF 327 (620)
Q Consensus 253 vgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~-P~~~----~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~ 327 (620)
+|||++||++||+++|++|+|+||+||||++ |++. ++|||.+|||++|||+||+|.+++.++.+.+++||.+|+
T Consensus 238 ~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~- 316 (409)
T PRK11790 238 ASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQEAQENIGLEVAGKLVKYS- 316 (409)
T ss_pred CCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHHHHHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999999999999987 4444 479999999999999999999999999999999999997
Q ss_pred cCCCCCccccC
Q 007040 328 DGVIPKNAISD 338 (620)
Q Consensus 328 ~G~~p~nvVn~ 338 (620)
.|+.+.+.||.
T Consensus 317 ~~~~~~~~vn~ 327 (409)
T PRK11790 317 DNGSTLSAVNF 327 (409)
T ss_pred cCCCcCcceec
Confidence 77778899985
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-59 Score=503.30 Aligned_cols=286 Identities=21% Similarity=0.287 Sum_probs=255.5
Q ss_pred cccccceEEEEecC--CCCCHHHHhcCCCCeEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhc
Q 007040 55 GKIEAAAAVLLHSL--AYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRR 132 (620)
Q Consensus 55 ~~l~~AdaVlv~s~--~~l~~e~l~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rr 132 (620)
+.+.++|++|+... .+++++.++++|+||||+++|+|+|+||+++|.++||.|+|++|+++.+||||++++||+++|+
T Consensus 93 ~~l~dadili~~~~~~~~~~~e~l~~ap~LK~I~~~g~G~D~iDl~aa~~~gI~V~n~~g~na~sVAE~al~liL~l~R~ 172 (386)
T PLN03139 93 KHIPDLHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRN 172 (386)
T ss_pred HHhCCCeEEEEcCccCCCCCHHHHhhCCCccEEEECCccccccCHHHHHHCCeEEEECCCcCcHHHHHHHHHHHHHHHcC
Confidence 56789999887642 4699999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCH
Q 007040 133 THLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTL 212 (620)
Q Consensus 133 l~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL 212 (620)
+..+++. .+++.|..... .....+|.|++|||||+|+||+.+|++|++|||+|++||++..........++...+++
T Consensus 173 ~~~~~~~-~~~g~W~~~~~--~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l 249 (386)
T PLN03139 173 FLPGYHQ-VVSGEWNVAGI--AYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDL 249 (386)
T ss_pred cHHHHHH-HHhCCCccccc--cCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCH
Confidence 9998886 57899974211 12236899999999999999999999999999999999998643322223345556799
Q ss_pred HhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCC-CCCCCccc
Q 007040 213 NDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWV 291 (620)
Q Consensus 213 ~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~-P~~~~spL 291 (620)
++++++||+|++|||+|++|+++||++.|++||+|++|||+|||++||++||+++|++|+|+||+||||++ |++.++||
T Consensus 250 ~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL 329 (386)
T PLN03139 250 DAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPW 329 (386)
T ss_pred HHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996 77889999
Q ss_pred cCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCC--CCCccccCCCCccC
Q 007040 292 REMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGV--IPKNAISDTEGCEN 344 (620)
Q Consensus 292 ~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~--~p~nvVn~~~~y~~ 344 (620)
|.+|||++|||+||.|.+++.++...+++||.+|+ +|+ +|.++|.....|.+
T Consensus 330 ~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~~~~-~G~~~~~~~~i~~~~~~~~ 383 (386)
T PLN03139 330 RYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYF-KGEDFPAQNYIVKEGKLAS 383 (386)
T ss_pred hcCCCeEEcccccccCHHHHHHHHHHHHHHHHHHH-cCCCCCCcceeecCCcccc
Confidence 99999999999999999999999999999999997 675 47788877777754
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-60 Score=506.22 Aligned_cols=321 Identities=20% Similarity=0.207 Sum_probs=266.3
Q ss_pred CCCCCEEEEeCCCCCChhHHhhccCC-ceEEecCCC--CCc----cccc-ccceEEEEecCCCCCHHHHhcCCC--CeEE
Q 007040 16 PTPLPSVVALNCIEDCVLEQDSLAGV-ALVEHVPLG--RLA----DGKI-EAAAAVLLHSLAYLPRAAQRRLRP--YQLI 85 (620)
Q Consensus 16 ~~~kPkVvvL~~~ed~~~~~~~L~~l-~~v~~~~~~--~l~----e~~l-~~AdaVlv~s~~~l~~e~l~~lp~--LK~I 85 (620)
+-++++|++.....+.. ..+.|+.. .++..+... ..+ .+.+ +++|++++.....+++++++++++ ||+|
T Consensus 12 ~~~~~~v~~~~~~~~~~-~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~lk~I 90 (386)
T PLN02306 12 PNGKYRVVSTKPMPGTR-WINLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSKAGGKAF 90 (386)
T ss_pred CCCCceEEEeCCCCcHH-HHHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCCceEE
Confidence 34688999887654321 23344443 355433211 122 2344 468888887666899999999996 6999
Q ss_pred EEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEE
Q 007040 86 LCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVL 165 (620)
Q Consensus 86 ~~~gaG~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktV 165 (620)
++.|+|+|+||+++|.++||.|+|+||+++.+||||++++||+++|+++.+++. ++++.|...... ...+.+|.|+||
T Consensus 91 ~~~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~-~~~g~w~~~~~~-~~~g~~L~gktv 168 (386)
T PLN02306 91 SNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEF-MRAGLYEGWLPH-LFVGNLLKGQTV 168 (386)
T ss_pred EECCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHH-HHcCCCcccccc-ccCCcCCCCCEE
Confidence 999999999999999999999999999999999999999999999999998886 577888532111 112357999999
Q ss_pred EEEeCChhhHHHHHHHh-hCCCEEEEECCCCCCCCc----ccc----------CCceecCCHHhhhcCCcEEEEcccCCh
Q 007040 166 GIVGRSASARALATRSL-SFKMSVLYFDVPEGKGKV----TFP----------SAARRMDTLNDLLAASDVISLHCAVTD 230 (620)
Q Consensus 166 GIIGlG~IG~~vA~~Lk-afG~~V~~~dr~~~~~~~----~~~----------~g~~~~~sL~eLL~~sDvVil~lPlT~ 230 (620)
||||+|+||+.+|++|+ +|||+|++||++...... .+. .......+|++++++||+|++|||+|+
T Consensus 169 GIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~ 248 (386)
T PLN02306 169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDK 248 (386)
T ss_pred EEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCCh
Confidence 99999999999999985 999999999998642211 000 011224589999999999999999999
Q ss_pred hhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEEEcCCCCCCcHHH
Q 007040 231 ETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEV 310 (620)
Q Consensus 231 ~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVIlTPHiAg~T~ea 310 (620)
+|+||||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+.++|||++||||+|||+||+|.++
T Consensus 249 ~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~~~~L~~~pNVilTPHiag~T~e~ 328 (386)
T PLN02306 249 TTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPGLADMKNAVVVPHIASASKWT 328 (386)
T ss_pred hhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCCcchHhhCCCEEECCccccCcHHH
Confidence 99999999999999999999999999999999999999999999999999998666778999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCccccCCC
Q 007040 311 WMEIRDKAISVLQTFFFDGVIPKNAISDTE 340 (620)
Q Consensus 311 ~~~~~~~a~enL~~~L~~G~~p~nvVn~~~ 340 (620)
++++...+++||.+|+ +|+++.|.||..+
T Consensus 329 ~~~~~~~~~~ni~~~~-~g~~~~~~~~~~~ 357 (386)
T PLN02306 329 REGMATLAALNVLGKL-KGYPVWGDPNRVE 357 (386)
T ss_pred HHHHHHHHHHHHHHHH-cCCCCcccccchh
Confidence 9999999999999996 8999999999554
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-59 Score=503.90 Aligned_cols=307 Identities=22% Similarity=0.286 Sum_probs=260.6
Q ss_pred eCCCCCChhHHhhccCC-ceEEecCCCC----CcccccccceEEEEec--CCCCCHHHHhcCCCCeEEEEecccCCccch
Q 007040 25 LNCIEDCVLEQDSLAGV-ALVEHVPLGR----LADGKIEAAAAVLLHS--LAYLPRAAQRRLRPYQLILCLGSSDRTVDS 97 (620)
Q Consensus 25 L~~~ed~~~~~~~L~~l-~~v~~~~~~~----l~e~~l~~AdaVlv~s--~~~l~~e~l~~lp~LK~I~~~gaG~D~VD~ 97 (620)
+.|.....-.+..|+.. .++....... ...+.+.++|++++.. ..++++++++++|+||||+++|+|+|+||+
T Consensus 51 ~~~~~~~~~~~~~l~~~g~e~~~~~~~~~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~~p~LK~I~~~g~G~D~id~ 130 (385)
T PRK07574 51 LGSVSGELGLRKFLEERGHELVVTSDKDGPDSDFEKELPDADVVISQPFWPAYLTAERIAKAPNLKLAITAGIGSDHVDL 130 (385)
T ss_pred eeeccChhhHHHHHHhcCcEEEEeCCCCCCHHHHHHHcCCCeEEEEecCCCCCCCHHHHhhCCCCcEEEECCcccccccH
Confidence 34433333333455554 3554433221 1235678999998864 257999999999999999999999999999
Q ss_pred HHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHH
Q 007040 98 ALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARAL 177 (620)
Q Consensus 98 ~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~v 177 (620)
++|.++||.|+|++++++.+||||++++||+++|++..+++. .+++.|..... ....++|.|++|||||+|+||+.|
T Consensus 131 ~aa~~~gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~-~~~g~W~~~~~--~~~~~~L~gktVGIvG~G~IG~~v 207 (385)
T PRK07574 131 QAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQ-AVEGGWNIADC--VSRSYDLEGMTVGIVGAGRIGLAV 207 (385)
T ss_pred HHHHHCCcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHH-HHhCCCCcccc--cccceecCCCEEEEECCCHHHHHH
Confidence 999999999999999999999999999999999999998887 57899974311 112468999999999999999999
Q ss_pred HHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCCh
Q 007040 178 ATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 178 A~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~ 257 (620)
|++|++|||+|++||++..........++....+++++++.||+|++|||+|++|++|||++.|++||+|++|||+|||+
T Consensus 208 A~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~ 287 (385)
T PRK07574 208 LRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGK 287 (385)
T ss_pred HHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCc
Confidence 99999999999999998633222222345556789999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHcCCcceeEeecCCC-CCCCCccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCcc
Q 007040 258 LLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNA 335 (620)
Q Consensus 258 vVDe~AL~~AL~~G~I~GAaLDV~E~-P~~~~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~p~nv 335 (620)
+||++||++||++|+|+||+||||++ |++.++|||++|||++|||+||+|.+++.++...+++||.+|+ +|+++.|.
T Consensus 288 iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~~~~-~G~~~~~~ 365 (385)
T PRK07574 288 IVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECFF-EGRPIRDE 365 (385)
T ss_pred hhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHHHHH-cCCCCCCC
Confidence 99999999999999999999999996 7778999999999999999999999999999999999999997 78766554
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-59 Score=496.41 Aligned_cols=313 Identities=22% Similarity=0.217 Sum_probs=260.7
Q ss_pred CCCCCCCEEEEeCCCCCC--hhHHhhccCCceEEecC-CCCCcccccccceEEEEecCCCCCHHHHhcCCCCeEEEEecc
Q 007040 14 DNPTPLPSVVALNCIEDC--VLEQDSLAGVALVEHVP-LGRLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGS 90 (620)
Q Consensus 14 ~~~~~kPkVvvL~~~ed~--~~~~~~L~~l~~v~~~~-~~~l~e~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~ga 90 (620)
.+.+++|+|+++....+. ....+.++....+.... ..+...+.+.++|+++++. ..+++++++.+|+||||++.|+
T Consensus 13 ~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~d~~i~~~-~~~~~~~l~~~~~Lk~I~~~~~ 91 (347)
T PLN02928 13 HSDMRPTRVLFCGPEFPASYSYTREYLQKYPFIQVDAVAREDVPDVIANYDICVPKM-MRLDADIIARASQMKLIMQFGV 91 (347)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHhhcCCeeEecCCCHHHHHHHhcCCcEEEECC-CCCCHHHHhcCCCceEEEECCc
Confidence 345678889888765442 22345554443222111 1111234578899877653 4799999999999999999999
Q ss_pred cCCccchHHHHhcCcEEEEcCCC---ChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEE
Q 007040 91 SDRTVDSALAADLGLRLIHVDTS---RAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGI 167 (620)
Q Consensus 91 G~D~VD~~aa~erGI~VtNtpg~---~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGI 167 (620)
|+|+||+++|.++||.|+|+|++ ++.+||||+++++|+++|++..+.+. .+++.|... ...+|.|++|||
T Consensus 92 G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~-~~~~~w~~~------~~~~l~gktvGI 164 (347)
T PLN02928 92 GLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQIS-LKARRLGEP------IGDTLFGKTVFI 164 (347)
T ss_pred ccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHH-HHcCCcccc------cccCCCCCEEEE
Confidence 99999999999999999999986 78999999999999999999988886 578889631 125799999999
Q ss_pred EeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-----------ccCCceecCCHHhhhcCCcEEEEcccCChhhHhhc
Q 007040 168 VGRSASARALATRSLSFKMSVLYFDVPEGKGKVT-----------FPSAARRMDTLNDLLAASDVISLHCAVTDETIQII 236 (620)
Q Consensus 168 IGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~-----------~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI 236 (620)
||+|.||+.+|++|++|||+|++|||+....... .........+|++++++||+|++|||+|++|++||
T Consensus 165 iG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li 244 (347)
T PLN02928 165 LGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIV 244 (347)
T ss_pred ECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhccc
Confidence 9999999999999999999999999974321110 00001145689999999999999999999999999
Q ss_pred CHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCC-CCCCCccccCCCcEEEcCCCCCCcHHHHHHHH
Q 007040 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIR 315 (620)
Q Consensus 237 ~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~-P~~~~spL~~~pNVIlTPHiAg~T~ea~~~~~ 315 (620)
+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++ |++.++|||++||||+|||+|++|.+++.++.
T Consensus 245 ~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPHia~~t~~~~~~~~ 324 (347)
T PLN02928 245 NDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVTEYSYRSMG 324 (347)
T ss_pred CHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCcCCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999986 66789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCcc
Q 007040 316 DKAISVLQTFFFDGVIPKNA 335 (620)
Q Consensus 316 ~~a~enL~~~L~~G~~p~nv 335 (620)
+.+++||.+|+ .|+++.|+
T Consensus 325 ~~~~~nl~~~~-~g~~~~~~ 343 (347)
T PLN02928 325 KIVGDAALQLH-AGRPLTGI 343 (347)
T ss_pred HHHHHHHHHHH-CCCCCCce
Confidence 99999999996 78876654
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-58 Score=510.77 Aligned_cols=279 Identities=22% Similarity=0.282 Sum_probs=254.8
Q ss_pred cccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccH
Q 007040 55 GKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTH 134 (620)
Q Consensus 55 ~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~ 134 (620)
+.++++|++++++.+++++++++++|+||||+++|+|+|+||+++|.++||.|+|+|++++.+||||+++|||+++|+++
T Consensus 36 ~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~ 115 (525)
T TIGR01327 36 EIIPDYDALIVRSATKVTEEVIAAAPKLKVIGRAGVGVDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIP 115 (525)
T ss_pred HHhcCCCEEEEcCCCCcCHHHHhhCCCceEEEECCcccchhcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHH
Confidence 56789999998877789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHh
Q 007040 135 LLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLND 214 (620)
Q Consensus 135 ~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~e 214 (620)
.+++. .+++.|.... ....+|.|++|||||+|+||+.+|++|++|||+|++||++..... ....++...++|++
T Consensus 116 ~~~~~-~~~g~W~~~~----~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~-~~~~g~~~~~~l~e 189 (525)
T TIGR01327 116 QADAS-LKEGEWDRKA----FMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPER-AEQLGVELVDDLDE 189 (525)
T ss_pred HHHHH-HHcCCccccc----cCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhH-HHhcCCEEcCCHHH
Confidence 99887 5889997431 123579999999999999999999999999999999999743221 22334555568999
Q ss_pred hhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCC
Q 007040 215 LLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREM 294 (620)
Q Consensus 215 LL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~ 294 (620)
++++||+|++|||+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+.++|||++
T Consensus 190 ll~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~ 269 (525)
T TIGR01327 190 LLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDL 269 (525)
T ss_pred HHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999866779999999
Q ss_pred CcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCccccCCC
Q 007040 295 PNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTE 340 (620)
Q Consensus 295 pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~p~nvVn~~~ 340 (620)
|||++|||+|++|.+++.++.+.+++|+.+|+ .|++|.|.||...
T Consensus 270 ~nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~-~g~~~~~~vn~~~ 314 (525)
T TIGR01327 270 DNVIATPHLGASTREAQENVATQVAEQVLDAL-KGLPVPNAVNAPG 314 (525)
T ss_pred CCeEECCCccccHHHHHHHHHHHHHHHHHHHH-cCCCCCceeeCCC
Confidence 99999999999999999999999999999996 8888999998764
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-57 Score=503.63 Aligned_cols=278 Identities=24% Similarity=0.311 Sum_probs=253.0
Q ss_pred cccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccH
Q 007040 55 GKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTH 134 (620)
Q Consensus 55 ~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~ 134 (620)
+.+.++|++++++.+.+++++++++|+||||+++|+|+|+||+++|.++||.|+|+|++++.+||||++++||+++|+++
T Consensus 38 ~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~ 117 (526)
T PRK13581 38 EIIGDYDALIVRSATKVTAEVLEAAKNLKVIGRAGVGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIP 117 (526)
T ss_pred HHhcCCCEEEEcCCCCCCHHHHhhCCCCeEEEECCcccccccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHH
Confidence 45788999998877789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHh
Q 007040 135 LLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLND 214 (620)
Q Consensus 135 ~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~e 214 (620)
.+++. .+++.|.... ....+|.|++|||||+|+||+.+|++|++|||+|++||++..... ....++... ++++
T Consensus 118 ~~~~~-~~~g~W~~~~----~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~-~~~~g~~~~-~l~e 190 (526)
T PRK13581 118 QAHAS-LKAGKWERKK----FMGVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPER-AAQLGVELV-SLDE 190 (526)
T ss_pred HHHHH-HHcCCCCccC----ccccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhH-HHhcCCEEE-cHHH
Confidence 99886 5889997531 123579999999999999999999999999999999999753221 222344444 8999
Q ss_pred hhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCC
Q 007040 215 LLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREM 294 (620)
Q Consensus 215 LL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~ 294 (620)
++++||+|++|||+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+.++|||++
T Consensus 191 ll~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~ 270 (526)
T PRK13581 191 LLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFEL 270 (526)
T ss_pred HHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999855669999999
Q ss_pred CcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCccccCCC
Q 007040 295 PNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTE 340 (620)
Q Consensus 295 pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~p~nvVn~~~ 340 (620)
|||++|||+|++|.+++.++.+.+++||.+|+ .|++|.|+||...
T Consensus 271 ~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~-~g~~~~~~vn~~~ 315 (526)
T PRK13581 271 PNVVVTPHLGASTAEAQENVAIQVAEQVIDAL-RGGPVPNAVNLPS 315 (526)
T ss_pred CCeeEcCccccchHHHHHHHHHHHHHHHHHHH-cCCCcCceeeCCC
Confidence 99999999999999999999999999999996 8888999998754
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-56 Score=469.94 Aligned_cols=274 Identities=19% Similarity=0.255 Sum_probs=243.1
Q ss_pred cccccceEEEEecCCCCCHHHHhcCC--CCeEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhc
Q 007040 55 GKIEAAAAVLLHSLAYLPRAAQRRLR--PYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRR 132 (620)
Q Consensus 55 ~~l~~AdaVlv~s~~~l~~e~l~~lp--~LK~I~~~gaG~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rr 132 (620)
+.+.++|++++.....+++++++++| +||+|++.|+|+|+||+++|.++||.|+|+|++++++||||++++||+++|+
T Consensus 41 ~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~ 120 (330)
T PRK12480 41 DQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRR 120 (330)
T ss_pred HHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEecccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHh
Confidence 56788999988876689999999998 8999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCH
Q 007040 133 THLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTL 212 (620)
Q Consensus 133 l~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL 212 (620)
++.+++. .+++.|.... + ...++|+|++|||||+|.||+++|++|++|||+|++||++...... ......++
T Consensus 121 ~~~~~~~-~~~~~~~w~~-~--~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~----~~~~~~~l 192 (330)
T PRK12480 121 FPDIERR-VQAHDFTWQA-E--IMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLD----FLTYKDSV 192 (330)
T ss_pred HHHHHHH-HHhCCccccc-c--cCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhh----hhhccCCH
Confidence 9998886 4666553111 1 1235799999999999999999999999999999999998743221 12234589
Q ss_pred HhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCC------
Q 007040 213 NDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQW------ 286 (620)
Q Consensus 213 ~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~------ 286 (620)
++++++||+|++|+|++++|.++|+++.|+.||+|++|||+|||.+||++||++||++|+|+||+||||++||+
T Consensus 193 ~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~ 272 (330)
T PRK12480 193 KEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDW 272 (330)
T ss_pred HHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997442
Q ss_pred ----C----CccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q 007040 287 ----M----EAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAIS 337 (620)
Q Consensus 287 ----~----~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~p~nvVn 337 (620)
. .+|||++|||++|||+|++|.+++.++.+.+++|+.+|+ .|+.+.+.||
T Consensus 273 ~~~~~~~~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~ 330 (330)
T PRK12480 273 TNKDIDDKTLLELIEHERILVTPHIAFFSDEAVQNLVEGGLNAALSVI-NTGTCETRLN 330 (330)
T ss_pred cccccCchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHHHH-hCCCCcccCC
Confidence 1 247999999999999999999999999999999999997 6776888776
|
|
| >KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-56 Score=458.78 Aligned_cols=309 Identities=20% Similarity=0.272 Sum_probs=269.5
Q ss_pred EEEEeCCCCCChhHHhhccCCc-eEEecCCC--CCcccccccceEEEEecCCCCCHHHHh-cCCCCeEEEEecccCCccc
Q 007040 21 SVVALNCIEDCVLEQDSLAGVA-LVEHVPLG--RLADGKIEAAAAVLLHSLAYLPRAAQR-RLRPYQLILCLGSSDRTVD 96 (620)
Q Consensus 21 kVvvL~~~ed~~~~~~~L~~l~-~v~~~~~~--~l~e~~l~~AdaVlv~s~~~l~~e~l~-~lp~LK~I~~~gaG~D~VD 96 (620)
+|++++.++...++ .|++.. .++..... +.....++++|++++++.+++++++++ ...+||+|.+.++|+|+||
T Consensus 8 ~il~~e~~~~~~~~--~l~~~g~~v~~~~~~~~eel~~~i~~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~G~dNVD 85 (406)
T KOG0068|consen 8 KILVAESLDQACIE--ILKDNGYQVEFKKNLSLEELIEKIKDCDALIVRSKTKVTADVLEAAAGGLKVVGRAGIGVDNVD 85 (406)
T ss_pred eEEEecccchHHHH--HHHhcCceEEEeccCCHHHHHHHhccCCEEEEEeCCeecHHHHHhhcCCeEEEEecccCccccC
Confidence 88888876655443 555543 44433211 122356789999999999999999999 5667999999999999999
Q ss_pred hHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHH
Q 007040 97 SALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARA 176 (620)
Q Consensus 97 ~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~ 176 (620)
+.+|+++||.|.|+|.+|+.++|||++++|++|.|++++.... +++|.|.... ..+.+|+|||+||||+|+||+.
T Consensus 86 L~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s-~k~g~wnr~~----~~G~el~GKTLgvlG~GrIGse 160 (406)
T KOG0068|consen 86 LKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASAS-MKEGKWNRVK----YLGWELRGKTLGVLGLGRIGSE 160 (406)
T ss_pred hhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhhee-eecCceeecc----eeeeEEeccEEEEeecccchHH
Confidence 9999999999999999999999999999999999999988775 7999998653 2347899999999999999999
Q ss_pred HHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCC
Q 007040 177 LATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 177 vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG 256 (620)
+|++++++||+|++||+...... ....|++. .+++|+++.||+|++|||+||+|.+|||.+.|+.||+|..+||++||
T Consensus 161 VA~r~k~~gm~vI~~dpi~~~~~-~~a~gvq~-vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRG 238 (406)
T KOG0068|consen 161 VAVRAKAMGMHVIGYDPITPMAL-AEAFGVQL-VSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARG 238 (406)
T ss_pred HHHHHHhcCceEEeecCCCchHH-HHhcccee-eeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCC
Confidence 99999999999999999875433 23345555 59999999999999999999999999999999999999999999999
Q ss_pred hhhcHHHHHHHHHcCCcceeEeecCCCCCCC---CccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 007040 257 QLLDDCAVKQLLIDGTLAGCALDGAEGPQWM---EAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPK 333 (620)
Q Consensus 257 ~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~---~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~p~ 333 (620)
++||++||++||++|+++|||||||++|||. ++.|-.+||||+|||+|+.|.|+..++...+++++..|+ .| ...
T Consensus 239 GvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~iaievaea~~~~~-~~-~~~ 316 (406)
T KOG0068|consen 239 GVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQSRIAIEVAEAVSDYI-NG-NSA 316 (406)
T ss_pred ceechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHHHHHHHHHHHHHHHHh-cc-Ccc
Confidence 9999999999999999999999999987776 678999999999999999999999999999999999996 66 577
Q ss_pred ccccCCC
Q 007040 334 NAISDTE 340 (620)
Q Consensus 334 nvVn~~~ 340 (620)
.+||...
T Consensus 317 g~Vna~~ 323 (406)
T KOG0068|consen 317 GSVNAPE 323 (406)
T ss_pred ceechhh
Confidence 7887654
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-55 Score=456.57 Aligned_cols=270 Identities=18% Similarity=0.222 Sum_probs=236.2
Q ss_pred cccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCCccchHH-----HHhcCcEEEEcCC-CChHHHHHHHHHHHHHHH
Q 007040 57 IEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSAL-----AADLGLRLIHVDT-SRAEEIADTVMALLLGLL 130 (620)
Q Consensus 57 l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D~VD~~a-----a~erGI~VtNtpg-~~a~aVAE~aLaLiLal~ 130 (620)
..++|+++++.. +.+++. .++||||++.|+|+|++|..+ +..+||.|+|+++ .++.+||||++++||+++
T Consensus 36 ~~~a~~~~~~~~---~~~~l~-~~~Lk~I~~~~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~ 111 (312)
T PRK15469 36 NDPADYALVWHP---PVEMLA-GRDLKAVFALGAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWF 111 (312)
T ss_pred CccCeEEEEeCC---ChHHhc-cCCceEEEEcccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHH
Confidence 568899888753 567775 589999999999999998332 3458999999864 789999999999999999
Q ss_pred hccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecC
Q 007040 131 RRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMD 210 (620)
Q Consensus 131 Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~ 210 (620)
|+++.+... .+.+.|... ...++.|+||||||+|.||+.||++|++|||+|++||++...... . .......
T Consensus 112 r~~~~~~~~-~~~~~w~~~------~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~-~-~~~~~~~ 182 (312)
T PRK15469 112 RRFDDYQAL-QNSSHWQPL------PEYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPG-V-QSFAGRE 182 (312)
T ss_pred cChHHHHHH-HHhCCcCCC------CCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCC-c-eeecccc
Confidence 999988776 478899642 124689999999999999999999999999999999987643221 1 1112346
Q ss_pred CHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCC-CCCCCc
Q 007040 211 TLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEA 289 (620)
Q Consensus 211 sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~-P~~~~s 289 (620)
+|++++++||+|++|||+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++ |++.++
T Consensus 183 ~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~ 262 (312)
T PRK15469 183 ELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPES 262 (312)
T ss_pred cHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999996 777889
Q ss_pred cccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCc
Q 007040 290 WVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTEGC 342 (620)
Q Consensus 290 pL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~p~nvVn~~~~y 342 (620)
|||++|||++|||+|++|.+. ++...+++|+++|+ +|++|.|.||++.||
T Consensus 263 pl~~~~nvi~TPHiag~t~~~--~~~~~~~~n~~~~~-~g~~~~~~V~~~~gY 312 (312)
T PRK15469 263 PLWQHPRVAITPHVAAVTRPA--EAVEYISRTIAQLE-KGERVCGQVDRARGY 312 (312)
T ss_pred hhhcCCCeEECCcCCCCcCHH--HHHHHHHHHHHHHH-cCCCCcccCCcccCC
Confidence 999999999999999999874 68899999999985 999999999999998
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-54 Score=458.68 Aligned_cols=275 Identities=20% Similarity=0.242 Sum_probs=243.7
Q ss_pred cccccceEEEEecCCCCCHHHHhcCCC--CeEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhc
Q 007040 55 GKIEAAAAVLLHSLAYLPRAAQRRLRP--YQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRR 132 (620)
Q Consensus 55 ~~l~~AdaVlv~s~~~l~~e~l~~lp~--LK~I~~~gaG~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rr 132 (620)
+.+.++|++++...+++++++++++|+ ||+|++.|+|+|+||+++|+++||.|+|+|++++.+||||++++||+++|+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~ 120 (332)
T PRK08605 41 EEVEGFDGLSLSQQIPLSEAIYKLLNELGIKQIAQRSAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRH 120 (332)
T ss_pred HHhcCCCEEEEecCCCCCHHHHHhhhhcCceEEEEcccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcC
Confidence 457789999888777999999999997 999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHH-hhCCCEEEEECCCCCCCCccccCCceecCC
Q 007040 133 THLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRS-LSFKMSVLYFDVPEGKGKVTFPSAARRMDT 211 (620)
Q Consensus 133 l~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~L-kafG~~V~~~dr~~~~~~~~~~~g~~~~~s 211 (620)
+..+++. ++++.|.... . ...++|+|++|||||+|.||+++|++| ++|||+|++||++..... ...+....+
T Consensus 121 ~~~~~~~-~~~~~~~~~~-~--~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~---~~~~~~~~~ 193 (332)
T PRK08605 121 FNQIQTK-VREHDFRWEP-P--ILSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA---ATYVDYKDT 193 (332)
T ss_pred hHHHHHH-HHhCCccccc-c--cccceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH---HhhccccCC
Confidence 9998876 4677663211 1 123689999999999999999999999 799999999998864321 122334468
Q ss_pred HHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCC---CCC
Q 007040 212 LNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQ---WME 288 (620)
Q Consensus 212 L~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~---~~~ 288 (620)
+++++++||+|++|+|++++|.++++.+.|+.||+|++|||++||.++|+++|+++|++|+|+||+||||+.|| +.+
T Consensus 194 l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~ 273 (332)
T PRK08605 194 IEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSD 273 (332)
T ss_pred HHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998643 344
Q ss_pred c-----------cccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q 007040 289 A-----------WVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAIS 337 (620)
Q Consensus 289 s-----------pL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~p~nvVn 337 (620)
+ +||.+||||+|||+|++|.+++.++...+++|+.+|+ +|+...+.||
T Consensus 274 ~~~~~~~~~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~n~~~~~-~g~~~~~~~~ 332 (332)
T PRK08605 274 QRGQTINDPLLESLINREDVILTPHIAFYTDAAVKNLIVDALDATLEVL-QTGTTRLRVN 332 (332)
T ss_pred cccccccchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHHHH-cCCCCCCCcC
Confidence 3 5999999999999999999999999999999999997 7777777765
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-54 Score=459.94 Aligned_cols=280 Identities=22% Similarity=0.284 Sum_probs=247.8
Q ss_pred EEEEeCCCCCChhHHhhccCCceEEecCCCCCcccccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCCccchHHH
Q 007040 21 SVVALNCIEDCVLEQDSLAGVALVEHVPLGRLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALA 100 (620)
Q Consensus 21 kVvvL~~~ed~~~~~~~L~~l~~v~~~~~~~l~e~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D~VD~~aa 100 (620)
+|++.+.. ++..+.++.+.++..++...+..+.++++|++++++.+++++++++ .++||||+++++|+||||++++
T Consensus 2 kI~~d~~~---p~~~~~~~~~~~v~~~~~~~~~~~~l~daD~liv~~~t~v~~~ll~-~~~Lk~I~~~~~G~D~iD~~~~ 77 (381)
T PRK00257 2 KIVADENI---PLLDAFFAGFGEIRRLPGRAFDRAAVRDADVLLVRSVTRVDRALLE-GSRVRFVGTCTIGTDHLDLDYF 77 (381)
T ss_pred EEEEecCc---hhHHHHHhhCCcEEEcCCcccCHHHhCCceEEEEeCCCCCCHHHhc-CCCCeEEEECCccccccCHHHH
Confidence 56666654 3456677777788888777777778999999999988899999997 5899999999999999999999
Q ss_pred HhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHH
Q 007040 101 ADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATR 180 (620)
Q Consensus 101 ~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~ 180 (620)
.++||.|+|+||+|+.+||||+++++|++.|+. ..++.|+||||||+|+||+.+|++
T Consensus 78 ~~~gI~v~napg~na~aVAE~v~~~lL~l~r~~-----------------------g~~l~gktvGIIG~G~IG~~va~~ 134 (381)
T PRK00257 78 AEAGITWSSAPGCNARGVVDYVLGSLLTLAERE-----------------------GVDLAERTYGVVGAGHVGGRLVRV 134 (381)
T ss_pred HHCCCEEEECCCcChHHHHHHHHHHHHHHhccc-----------------------CCCcCcCEEEEECCCHHHHHHHHH
Confidence 999999999999999999999999999998751 135899999999999999999999
Q ss_pred HhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCCh----hhHhhcCHHHhhccCCCcEEEEcCCC
Q 007040 181 SLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTD----ETIQIINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 181 LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~----~T~~lI~~~~L~~MK~gAiLINvgRG 256 (620)
|++|||+|++||+...... +.....+|++++++||+|++|+|+|+ .|+||||++.|++||+|++|||+|||
T Consensus 135 l~a~G~~V~~~Dp~~~~~~-----~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG 209 (381)
T PRK00257 135 LRGLGWKVLVCDPPRQEAE-----GDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRG 209 (381)
T ss_pred HHHCCCEEEEECCcccccc-----cCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCC
Confidence 9999999999998653211 12234689999999999999999999 59999999999999999999999999
Q ss_pred hhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCc
Q 007040 257 QLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKN 334 (620)
Q Consensus 257 ~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~p~n 334 (620)
++||++||+++|++|++.||+|||||+||..+++||.. |||+|||+||+|.++..++..++++||.+|+ ++..+..
T Consensus 210 ~vVde~AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~-nvi~TPHiAg~s~e~~~r~~~~~~~nl~~~~-~~~~~~~ 285 (381)
T PRK00257 210 AVVDNQALREALLSGEDLDAVLDVWEGEPQIDLELADL-CTIATPHIAGYSLDGKARGTAQIYQALCRFF-GIPARVS 285 (381)
T ss_pred cccCHHHHHHHHHhCCCcEEEEeCCCCCCCCChhhhhC-CEEEcCccccCCHHHHHHHHHHHHHHHHHHH-cCCCccc
Confidence 99999999999999999999999999877778899985 9999999999999999999999999999997 5654433
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-54 Score=460.00 Aligned_cols=273 Identities=19% Similarity=0.301 Sum_probs=242.9
Q ss_pred EEEEeCCCCCChhHHhhccCCceEEecCCCCCcccccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCCccchHHH
Q 007040 21 SVVALNCIEDCVLEQDSLAGVALVEHVPLGRLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALA 100 (620)
Q Consensus 21 kVvvL~~~ed~~~~~~~L~~l~~v~~~~~~~l~e~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D~VD~~aa 100 (620)
+|++.+.. +...+.|+...++...+...++.+.+.++|++++++.+.+++++++ .++||||+++++|+||||.+++
T Consensus 2 kIl~d~~~---~~~~~~~~~~~ev~~~~~~~~~~~~l~daD~liv~s~t~v~~~ll~-~~~Lk~I~~~~~G~D~iD~~~~ 77 (378)
T PRK15438 2 KILVDENM---PYARELFSRLGEVKAVPGRPIPVAQLADADALMVRSVTKVNESLLA-GKPIKFVGTATAGTDHVDEAWL 77 (378)
T ss_pred EEEEeCCc---chHHHHHhhcCcEEEeCCCCCCHHHhCCCcEEEEcCCCCCCHHHhc-CCCCeEEEECcccccccCHHHH
Confidence 46666543 3555677777788887766677777899999999988899999986 6899999999999999999999
Q ss_pred HhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHH
Q 007040 101 ADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATR 180 (620)
Q Consensus 101 ~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~ 180 (620)
.++||.|+|+||+|+.+||||++++||++.|+. . .+|.|+||||||+|+||+.+|++
T Consensus 78 ~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~-----------g------------~~L~gktvGIIG~G~IG~~vA~~ 134 (378)
T PRK15438 78 KQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERD-----------G------------FSLHDRTVGIVGVGNVGRRLQAR 134 (378)
T ss_pred HHCCCEEEECCCcCchHHHHHHHHHHHHHhccC-----------C------------CCcCCCEEEEECcCHHHHHHHHH
Confidence 999999999999999999999999999999851 1 25899999999999999999999
Q ss_pred HhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChh----hHhhcCHHHhhccCCCcEEEEcCCC
Q 007040 181 SLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDE----TIQIINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 181 LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~----T~~lI~~~~L~~MK~gAiLINvgRG 256 (620)
|++|||+|++|||...... .. ....+|++++++||+|++|+|+|++ |+|||+++.|++||+|++|||+|||
T Consensus 135 l~a~G~~V~~~dp~~~~~~----~~-~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG 209 (378)
T PRK15438 135 LEALGIKTLLCDPPRADRG----DE-GDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRG 209 (378)
T ss_pred HHHCCCEEEEECCcccccc----cc-cccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCc
Confidence 9999999999998643211 11 1246899999999999999999996 9999999999999999999999999
Q ss_pred hhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHH
Q 007040 257 QLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFF 326 (620)
Q Consensus 257 ~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L 326 (620)
++||++||+++|++|++.||+|||||+||..+++|+.++| |+|||+||+|.+...++..++++|+.+|+
T Consensus 210 ~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~~~~~Ll~~~~-i~TPHiAg~s~e~~~~~~~~~~~~l~~~~ 278 (378)
T PRK15438 210 AVVDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVD-IGTPHIAGYTLEGKARGTTQVFEAYSKFI 278 (378)
T ss_pred hhcCHHHHHHHHHhCCCcEEEEecCCCCCCCchhhhhcCC-EECCccCcCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987777888988766 99999999999999999999999999997
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-52 Score=437.39 Aligned_cols=262 Identities=19% Similarity=0.217 Sum_probs=227.5
Q ss_pred cccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHH
Q 007040 57 IEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLL 136 (620)
Q Consensus 57 l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~ 136 (620)
..+++++++... +..+++||||++.|+|+|+||+++|.++||.++| +|+++.+||||++++||+++|+++.+
T Consensus 32 ~~~a~~~~~~~~-------~~~~~~Lk~I~~~~aG~D~id~~~~~~~~i~~~~-~g~~~~~VAE~~l~l~L~l~R~i~~~ 103 (303)
T PRK06436 32 YYDAEAILIKGR-------YVPGKKTKMIQSLSAGVDHIDVSGIPENVVLCSN-AGAYSISVAEHAFALLLAWAKNICEN 103 (303)
T ss_pred cCCCCEEEecCC-------cCCCCCeEEEEECCcccCcccHHHHHhCCeEEEc-CCCCcHHHHHHHHHHHHHHHcChHHH
Confidence 457777765432 2346789999999999999999999998887766 58899999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCce-ecCCHHhh
Q 007040 137 ARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR-RMDTLNDL 215 (620)
Q Consensus 137 ~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~-~~~sL~eL 215 (620)
.+. .+++.|... ...+|+|++|||||+|+||+++|++|++|||+|++||++.... +.. ...+++++
T Consensus 104 ~~~-~~~g~w~~~------~~~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~------~~~~~~~~l~el 170 (303)
T PRK06436 104 NYN-MKNGNFKQS------PTKLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVND------GISSIYMEPEDI 170 (303)
T ss_pred HHH-HHcCCCCCC------CCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCccc------CcccccCCHHHH
Confidence 887 578999743 2357999999999999999999999999999999999975321 121 24689999
Q ss_pred hcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCC-CCCCCccccCC
Q 007040 216 LAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREM 294 (620)
Q Consensus 216 L~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~-P~~~~spL~~~ 294 (620)
+++||+|++|||+|++|+++|+++.|+.||||++|||+|||+++|++||+++|++|++.||+||||++ |++.++ .+
T Consensus 171 l~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~---~~ 247 (303)
T PRK06436 171 MKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITET---NP 247 (303)
T ss_pred HhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccC---CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999997 444444 68
Q ss_pred CcEEEcCCCC-CCcHHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCccCC
Q 007040 295 PNVLILPRSA-DYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTEGCENE 345 (620)
Q Consensus 295 pNVIlTPHiA-g~T~ea~~~~~~~a~enL~~~L~~G~~p~nvVn~~~~y~~~ 345 (620)
|||++|||++ ++|.++..++...+++||.+|+ .|+ |.|+||.+ +|..+
T Consensus 248 ~nviiTPHi~g~~t~e~~~~~~~~~~~ni~~~~-~g~-~~~~V~~~-~y~~~ 296 (303)
T PRK06436 248 DNVILSPHVAGGMSGEIMQPAVALAFENIKNFF-EGK-PKNIVRKE-EYIVR 296 (303)
T ss_pred CCEEECCccccccCHHHHHHHHHHHHHHHHHHH-cCC-CCceEchH-Hheee
Confidence 9999999976 5889999999999999999997 787 47999776 46554
|
|
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-53 Score=440.96 Aligned_cols=275 Identities=26% Similarity=0.351 Sum_probs=240.0
Q ss_pred cccceEEEEe-cCCCCCHHHHhcC-CCCeEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccH
Q 007040 57 IEAAAAVLLH-SLAYLPRAAQRRL-RPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTH 134 (620)
Q Consensus 57 l~~AdaVlv~-s~~~l~~e~l~~l-p~LK~I~~~gaG~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~ 134 (620)
+.....++.+ .....+.+.+.++ |++|+|+++|+|+||||+++|++|||+|+|+|+.++++|||++++++|.++|++.
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~~ 137 (336)
T KOG0069|consen 58 IADSRIAISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSLLLALLRRFS 137 (336)
T ss_pred ccceeeeeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHHHHHHHHHhhhh
Confidence 3344333333 3334556666665 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHh
Q 007040 135 LLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLND 214 (620)
Q Consensus 135 ~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~e 214 (620)
..++. ..++.|. ..+-...+..+.|++|||+|+|+||+.+|++|++||+.+.|++|+....+.....+.. ..++++
T Consensus 138 ~g~~~-~~~g~w~--~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~-~~d~~~ 213 (336)
T KOG0069|consen 138 EGNEM-VRNGGWG--WAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAE-FVDIEE 213 (336)
T ss_pred hhhhh-hhcCCcc--ccCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhccc-ccCHHH
Confidence 99886 5888992 2222234468999999999999999999999999999999999987655544333333 469999
Q ss_pred hhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCC
Q 007040 215 LLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREM 294 (620)
Q Consensus 215 LL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~ 294 (620)
++.+||+|++|||+|++|+|+||++.|.+||+|++|||++||+++|++++++||++|+|+||+||||+++|+.+++|+.+
T Consensus 214 ~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP~~~~~l~~~ 293 (336)
T KOG0069|consen 214 LLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEPPVDHPLLTL 293 (336)
T ss_pred HHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCCCCCcchhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999866999999999
Q ss_pred CcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCccc
Q 007040 295 PNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAI 336 (620)
Q Consensus 295 pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~p~nvV 336 (620)
+||++|||+|+.|.++..+|...++.|+.+|| .|++....|
T Consensus 294 dnvv~~PHigs~t~~t~~~m~~~v~~n~~~~~-~g~~~~~~~ 334 (336)
T KOG0069|consen 294 DNVVILPHIGSATLETREKMAEIVLNNLLAFF-SGKPLLTPV 334 (336)
T ss_pred cceeEecccccCcHHHHHHHHHHHHHHHHHHH-ccCCCCCcC
Confidence 99999999999999999999999999999997 777555444
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-44 Score=344.65 Aligned_cols=177 Identities=35% Similarity=0.479 Sum_probs=150.2
Q ss_pred HHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc
Q 007040 123 MALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF 202 (620)
Q Consensus 123 LaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~ 202 (620)
|++||+++|+++.++.. .+++.|... .....++++|++|||||+|+||+.+|++|++|||+|++|||+........
T Consensus 1 i~l~L~~~R~~~~~~~~-~~~~~W~~~---~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~ 76 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEA-QRNGEWASR---ERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGAD 76 (178)
T ss_dssp HHHHHHHHTTHHHHHHH-HHTTBHHHH---TTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHH
T ss_pred ChHHHHHHhCHHHHHHH-HHcCCCCCC---cCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcc
Confidence 68999999999999987 588999111 12345789999999999999999999999999999999999986433112
Q ss_pred cCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCC
Q 007040 203 PSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE 282 (620)
Q Consensus 203 ~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E 282 (620)
..+. ...+|++++++||+|++|||+|++|+++||++.|++||+|++|||+|||++||++||+++|++|+|.||+||||+
T Consensus 77 ~~~~-~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~ 155 (178)
T PF02826_consen 77 EFGV-EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFE 155 (178)
T ss_dssp HTTE-EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-S
T ss_pred cccc-eeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCC
Confidence 2233 556999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCCCCccccCCCcEEEcCCCC
Q 007040 283 G-PQWMEAWVREMPNVLILPRSA 304 (620)
Q Consensus 283 ~-P~~~~spL~~~pNVIlTPHiA 304 (620)
+ |++.++|||++||||+|||+|
T Consensus 156 ~EP~~~~~~l~~~~nvi~TPH~a 178 (178)
T PF02826_consen 156 PEPLPADSPLWDLPNVILTPHIA 178 (178)
T ss_dssp SSSSSTTHHHHTSTTEEEESS-T
T ss_pred CCCCCCCChHHcCCCEEEeCccC
Confidence 6 667788999999999999997
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >KOG0067 consensus Transcription factor CtBP [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-43 Score=364.90 Aligned_cols=399 Identities=25% Similarity=0.362 Sum_probs=336.8
Q ss_pred CCCCEEEEeCCCCCChhHHhhccCCceEEecCC---CCCcccccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCC
Q 007040 17 TPLPSVVALNCIEDCVLEQDSLAGVALVEHVPL---GRLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDR 93 (620)
Q Consensus 17 ~~kPkVvvL~~~ed~~~~~~~L~~l~~v~~~~~---~~l~e~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D 93 (620)
-..|.+.+++. .++..++..|+.++.+-+++. .++.+..+.+|...+.+....++++-+++++.||+|..+|.|+|
T Consensus 29 h~~p~~aLld~-rdc~vemPilk~~atvafcdaqstqeIhekvLneavgam~yh~i~l~reDlEkfkalRv~~rig~g~d 107 (435)
T KOG0067|consen 29 HPRPLVALLDG-RDCGVEMPILKDLATVAFCDAQSTQEIHEKVLNEAVGAMMYHTITLPREDLEKFKALRVIVRIGSGYD 107 (435)
T ss_pred CCCcchhhccc-ccccccchhhhcchheeeecccchHHHHHHHHHHhhhcceeeecccchhhHHHhhhhceeeeeccccc
Confidence 35667766653 566777778888877777763 34555667777777777777899999999999999999999999
Q ss_pred ccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCC---CCCCcceeecCcEEEEEeC
Q 007040 94 TVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQ---PLCRGMRRCRGLVLGIVGR 170 (620)
Q Consensus 94 ~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~---~~~~~~~~L~GktVGIIGl 170 (620)
++|+.+|.+.||.|||.|+...+.+|+-++.+||.++|+.....+. .+++.|.+... ....+...++|.++|++|+
T Consensus 108 n~dikaAseL~iavC~ip~~~Ve~~a~stl~hIl~l~rrntw~cq~-l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~ 186 (435)
T KOG0067|consen 108 NIDIKAASELGIAVCNIPSDAVEETADSTLCHILNLYRRNTWLCQA-LREGTCTQGLEQVREAACGLARIRGPTLGLIGF 186 (435)
T ss_pred hhhhhhhhhheeeeecccchhHHHHHHHHHHHHHhhhcccchhhhh-hcccceeechhhhhhhhhccccccccceeeecc
Confidence 9999999999999999999999999999999999999999888775 67888865432 2334557789999999999
Q ss_pred ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEE
Q 007040 171 SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFL 250 (620)
Q Consensus 171 G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiL 250 (620)
|++|++++.++++||+.|+.||++..... ....+...+-+|.+++.++|.|++||-+.+.++++|+.-.+.+|+.|+++
T Consensus 187 gr~g~av~~~A~afg~~~ifydp~~~~g~-~~~lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGafl 265 (435)
T KOG0067|consen 187 GRTGQAVALRAKAFGFVVIFYDPYLIDGI-DKSLGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFL 265 (435)
T ss_pred ccccceehhhhhcccceeeeecchhhhhh-hhhcccceecccchhhhhccceeeecccCcccccccccccceeecccceE
Confidence 99999999999999999999999986654 23345566667999999999999999999999999999999999999999
Q ss_pred EEcCCChhhcHHHHHHHHHcCCcceeE-eecCCCCCCCCccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcC
Q 007040 251 VNTGSSQLLDDCAVKQLLIDGTLAGCA-LDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDG 329 (620)
Q Consensus 251 INvgRG~vVDe~AL~~AL~~G~I~GAa-LDV~E~P~~~~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G 329 (620)
+|++||.++|+++|.++|+.|++.|++ -+ ...-||.+.||.|++||.+|+++.+.-++.+.++
T Consensus 266 vnta~gglvdekaLaqaLk~G~i~~aa~~~------~~~~~l~d~pn~ic~~~ta~~~e~~~~e~re~aa---------- 329 (435)
T KOG0067|consen 266 VNTARGGLVDEKALAQALKSGRIRGAAPRS------FKQGPLKDAPNLICTPHTAWYSEAASVELREVAA---------- 329 (435)
T ss_pred eeecccccCChHHHHhhhccCceecccCcc------cccccccCCCCCCCCcccchhhHHHHHHHHHHHh----------
Confidence 999999999999999999999999888 11 1223455777777777777776643322211000
Q ss_pred CCCCccccCCCCccCCCcchhhhhhhcccccccccccccccccccccCCcccccccccccCCCCccccCCCccccccccc
Q 007040 330 VIPKNAISDTEGCENEIDDEIEQYNKLDKVSTLEGSVGGQLTDDIQVSPEDSLKKGISWSRDSPSQLQGSGFSQNSANTK 409 (620)
Q Consensus 330 ~~p~nvVn~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (620)
T Consensus 330 -------------------------------------------------------------------------------- 329 (435)
T KOG0067|consen 330 -------------------------------------------------------------------------------- 329 (435)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcccccchhhhchhhhhccccCCCCccccccccCcccCCCCCccccccccCCCCCccccccCCCCcchhhcchhhhhh
Q 007040 410 SDGRRSRSGKKAKKRHARQKSLQKPDDPSALEKESTSHKEDDTAMSGTDQASSRCASPEELRSRKTPIESIQESTSKKLS 489 (620)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (620)
.++|.|+|+++..+ +|..+.+|....++-
T Consensus 330 --------------------------------------------------~eiR~ai~g~ip~~-l~~cvnkE~~~~~~p 358 (435)
T KOG0067|consen 330 --------------------------------------------------LEIRRAITGRIPDS-LRNCVNKEFSPTNAP 358 (435)
T ss_pred --------------------------------------------------hhhhhccCCCCchh-HHHHHhhhhccccCC
Confidence 04577899999998 999999999999999
Q ss_pred hcccccccccccccccceEEEEEEecCCceEEeeecccccceEEeeeccccCCCccceEEE-EecCccccccccccCCce
Q 007040 490 RSSKKLSEVSGETLKDGYVVALYARDRPALHISRQRHKGGGWILETMSNVTKRDPAAQFLI-CKSKDTIGLRSFTAGGKL 568 (620)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 568 (620)
-++++..++.+++++ ++++|+.+-. +|||.+ ++|+|+||+ +|++|++|
T Consensus 359 ~s~~~~~a~h~eL~g---~~~~y~~~~~---------------------------aap~~~paa~~~~i~~-~~~~~~~l 407 (435)
T KOG0067|consen 359 WSGIDGQAFHPELNG---ATYRYPPGIV---------------------------AAPFILPAANEGIIPG-GIPAGHNL 407 (435)
T ss_pred ccccchhhcchhhhc---cccccCCcce---------------------------ecccCCcccccccccc-cccccCCC
Confidence 999999999999999 8888877644 999999 999999999 99999999
Q ss_pred eeecccceEEEeeccccccccceeccccce
Q 007040 569 LQINRRMEFVFASHSFDAWESWAIEGPLEE 598 (620)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (620)
+|+|+.||++|. +|++|++|..|++..|
T Consensus 408 p~v~~~~q~psp--n~~~~~~~n~eh~~~e 435 (435)
T KOG0067|consen 408 PTVAHPSQAPSP--NQPTKHGDNREHPNDE 435 (435)
T ss_pred ccccCcccCCCC--CCcccCCccccCcCCC
Confidence 999999999999 9999999999998764
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.7e-19 Score=192.43 Aligned_cols=170 Identities=15% Similarity=0.123 Sum_probs=132.7
Q ss_pred ecccCCccc-hHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEE
Q 007040 88 LGSSDRTVD-SALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLG 166 (620)
Q Consensus 88 ~gaG~D~VD-~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVG 166 (620)
+++|+..+- .+.....+|+|+|+|++++.++||+++++++++...+ ++.+. ..+.|+++|
T Consensus 198 TttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~-------~R~~~------------~~LaGKtVg 258 (476)
T PTZ00075 198 TTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLIDGI-------FRATD------------VMIAGKTVV 258 (476)
T ss_pred chHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHHHHH-------HHhcC------------CCcCCCEEE
Confidence 446664431 1122346899999999999999999999999988322 22221 258999999
Q ss_pred EEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCC
Q 007040 167 IVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKP 246 (620)
Q Consensus 167 IIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~ 246 (620)
|||+|.||+.+|++|++|||+|+++++.+.....+...|.. ..+++++++.+|+|++|+ .|.++|+.+.|+.||+
T Consensus 259 VIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~-~~~leell~~ADIVI~at----Gt~~iI~~e~~~~MKp 333 (476)
T PTZ00075 259 VCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQ-VVTLEDVVETADIFVTAT----GNKDIITLEHMRRMKN 333 (476)
T ss_pred EECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCce-eccHHHHHhcCCEEEECC----CcccccCHHHHhccCC
Confidence 99999999999999999999999998776443222333443 347999999999999985 3788999999999999
Q ss_pred CcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCC
Q 007040 247 GAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWME 288 (620)
Q Consensus 247 gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~ 288 (620)
|++|||+||+ |++.++++|+.+. ++|+++..|...
T Consensus 334 GAiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~ 368 (476)
T PTZ00075 334 NAIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVD 368 (476)
T ss_pred CcEEEEcCCC---chHHhHHHHHhcC----CceeecccCCCC
Confidence 9999999999 7888888887643 789988644333
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.2e-18 Score=178.41 Aligned_cols=154 Identities=14% Similarity=0.120 Sum_probs=126.5
Q ss_pred CCCHHHHhcCCCCeEEEEecccCCccchH-HHHhcCcEEE------EcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHH
Q 007040 70 YLPRAAQRRLRPYQLILCLGSSDRTVDSA-LAADLGLRLI------HVDTSRAEEIADTVMALLLGLLRRTHLLARHALS 142 (620)
Q Consensus 70 ~l~~e~l~~lp~LK~I~~~gaG~D~VD~~-aa~erGI~Vt------Ntpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~ 142 (620)
.+++++++++|. ++...+|+++.|++ +|+++||.|+ |++.+|+.++||+++++++...
T Consensus 81 ~l~~~~l~~~~~---~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~~------------ 145 (287)
T TIGR02853 81 VLTPELLESTKG---HCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEHT------------ 145 (287)
T ss_pred cccHHHHHhcCC---CCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHhc------------
Confidence 567899999983 66667788888888 8999999999 9999999999999998777431
Q ss_pred hCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCce--ecCCHHhhhcCCc
Q 007040 143 ASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR--RMDTLNDLLAASD 220 (620)
Q Consensus 143 ~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~--~~~sL~eLL~~sD 220 (620)
. .+++|++++|||+|.||+.+|+.|+++|++|++++|+..........+.. ...++.+++.++|
T Consensus 146 --~------------~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aD 211 (287)
T TIGR02853 146 --D------------FTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEID 211 (287)
T ss_pred --C------------CCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCC
Confidence 0 24789999999999999999999999999999999987432211112222 2346788999999
Q ss_pred EEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCCh
Q 007040 221 VISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 221 vVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~ 257 (620)
+|++|+|.+ +++.+.++.|++++++||++..+
T Consensus 212 iVint~P~~-----ii~~~~l~~~k~~aliIDlas~P 243 (287)
T TIGR02853 212 IVINTIPAL-----VLTADVLSKLPKHAVIIDLASKP 243 (287)
T ss_pred EEEECCChH-----HhCHHHHhcCCCCeEEEEeCcCC
Confidence 999999975 78889999999999999999844
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.3e-17 Score=150.41 Aligned_cols=98 Identities=18% Similarity=0.183 Sum_probs=77.7
Q ss_pred EEEeCCCCCChhHHhhccC-CceEEecCCCCCc--ccccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCCccchH
Q 007040 22 VVALNCIEDCVLEQDSLAG-VALVEHVPLGRLA--DGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSA 98 (620)
Q Consensus 22 VvvL~~~ed~~~~~~~L~~-l~~v~~~~~~~l~--e~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D~VD~~ 98 (620)
|++++.+ .+...+.|+. + ++..+...... .+.++++|+++++..+++++++++++|+||||++.|+|+|+||++
T Consensus 1 ili~~~~--~~~~~~~l~~~~-~v~~~~~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~ 77 (133)
T PF00389_consen 1 ILITDPL--PDEEIERLEEGF-EVEFCDSPSEEELAERLKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDNIDLE 77 (133)
T ss_dssp EEESSS---SHHHHHHHHHTS-EEEEESSSSHHHHHHHHTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTTB-HH
T ss_pred eEEeccC--CHHHHHHHHCCc-eEEEeCCCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCcccHH
Confidence 4555543 3445566666 5 78777622221 256789999999987779999999999999999999999999999
Q ss_pred HHHhcCcEEEEcCCCChHHHHHHH
Q 007040 99 LAADLGLRLIHVDTSRAEEIADTV 122 (620)
Q Consensus 99 aa~erGI~VtNtpg~~a~aVAE~a 122 (620)
+|+++||.|+|+||+++.+||||+
T Consensus 78 ~a~~~gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 78 AAKERGIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp HHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred HHhhCeEEEEEeCCcCCcchhccc
Confidence 999999999999999999999999
|
The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A .... |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.5e-14 Score=147.92 Aligned_cols=169 Identities=12% Similarity=0.123 Sum_probs=130.6
Q ss_pred cccccceEEEEecC----------------CCCCHHHHhcCCCCeEEEEecccCCccchHHHHhcCcEEEEcCCC-----
Q 007040 55 GKIEAAAAVLLHSL----------------AYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTS----- 113 (620)
Q Consensus 55 ~~l~~AdaVlv~s~----------------~~l~~e~l~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNtpg~----- 113 (620)
+.++++|+|+..-. ..++.+.++.+|+...+. .|.+.++++ +.|.++||.+++....
T Consensus 51 ~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~ 128 (296)
T PRK08306 51 EALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVAI 128 (296)
T ss_pred HHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhhh
Confidence 44677888875511 123678999999997555 588999988 8889999999987754
Q ss_pred -ChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEEC
Q 007040 114 -RAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFD 192 (620)
Q Consensus 114 -~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~d 192 (620)
++.++||.++.+++... ...+.|++++|||+|.+|+.++..|+++|++|+++|
T Consensus 129 ~ns~~~aegav~~a~~~~--------------------------~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~ 182 (296)
T PRK08306 129 LNSIPTAEGAIMMAIEHT--------------------------PITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGA 182 (296)
T ss_pred hccHhHHHHHHHHHHHhC--------------------------CCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEE
Confidence 88999999777543211 023689999999999999999999999999999999
Q ss_pred CCCCCCCccccCCce--ecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCC
Q 007040 193 VPEGKGKVTFPSAAR--RMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 193 r~~~~~~~~~~~g~~--~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG 256 (620)
++..........+.. ...++.+.+.++|+||+++|. .+++++.++.|++++++||++..
T Consensus 183 r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~-----~~i~~~~l~~~~~g~vIIDla~~ 243 (296)
T PRK08306 183 RKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPA-----LVLTKEVLSKMPPEALIIDLASK 243 (296)
T ss_pred CCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCCh-----hhhhHHHHHcCCCCcEEEEEccC
Confidence 986443222222332 224677889999999999984 47889999999999999999863
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-14 Score=159.33 Aligned_cols=121 Identities=17% Similarity=0.157 Sum_probs=103.7
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
.+.|++++|+|+|.||+.+|+++++||++|+++++.+.....+...+... .++++++..+|+|+. +..|.++|+.
T Consensus 251 ~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~v-v~leEal~~ADVVI~----tTGt~~vI~~ 325 (477)
T PLN02494 251 MIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQV-LTLEDVVSEADIFVT----TTGNKDIIMV 325 (477)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCee-ccHHHHHhhCCEEEE----CCCCccchHH
Confidence 37899999999999999999999999999999998875433333344433 478999999999997 3457899999
Q ss_pred HHhhccCCCcEEEEcCC-ChhhcHHHHHHH--HHcCCcceeEeecCCCCC
Q 007040 239 ECLQHIKPGAFLVNTGS-SQLLDDCAVKQL--LIDGTLAGCALDGAEGPQ 285 (620)
Q Consensus 239 ~~L~~MK~gAiLINvgR-G~vVDe~AL~~A--L~~G~I~GAaLDV~E~P~ 285 (620)
+.|+.||+|++|||+|| +..||..+|.++ ++.+.+. +.+|+|+-|-
T Consensus 326 e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~d 374 (477)
T PLN02494 326 DHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFPD 374 (477)
T ss_pred HHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcCC
Confidence 99999999999999999 689999999998 9999998 9999998653
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3e-13 Score=142.70 Aligned_cols=94 Identities=13% Similarity=0.185 Sum_probs=78.9
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
..|+|++|||||+|+||+++|++|++||++|++|++.......+...+... .+++++++.||+|++|||+ ++|+++++
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v-~sl~Eaak~ADVV~llLPd-~~t~~V~~ 89 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEV-MSVSEAVRTAQVVQMLLPD-EQQAHVYK 89 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEE-CCHHHHHhcCCEEEEeCCC-hHHHHHHH
Confidence 468999999999999999999999999999999986543322222234443 4899999999999999997 77899999
Q ss_pred HHHhhccCCCcEEEEc
Q 007040 238 AECLQHIKPGAFLVNT 253 (620)
Q Consensus 238 ~~~L~~MK~gAiLINv 253 (620)
.+.+..||+|++|+-.
T Consensus 90 ~eil~~MK~GaiL~f~ 105 (335)
T PRK13403 90 AEVEENLREGQMLLFS 105 (335)
T ss_pred HHHHhcCCCCCEEEEC
Confidence 9999999999988753
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.7e-13 Score=145.71 Aligned_cols=120 Identities=17% Similarity=0.205 Sum_probs=102.6
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
.+.|++|+|+|+|.||+.+|++++++|++|+++|+.+.....+...|. ...++++++..+|+|+.+.. +.++|+.
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~-~v~~leeal~~aDVVItaTG----~~~vI~~ 266 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGF-RVMTMEEAAKIGDIFITATG----NKDVIRG 266 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCC-EeCCHHHHHhcCCEEEECCC----CHHHHHH
Confidence 378999999999999999999999999999999877644333333444 33478899999999987654 6789999
Q ss_pred HHhhccCCCcEEEEcCCChh-hcHHHHHHHHHcCCcceeEeecCCC
Q 007040 239 ECLQHIKPGAFLVNTGSSQL-LDDCAVKQLLIDGTLAGCALDGAEG 283 (620)
Q Consensus 239 ~~L~~MK~gAiLINvgRG~v-VDe~AL~~AL~~G~I~GAaLDV~E~ 283 (620)
+.|..||+|++|+|+||+.+ ||.++|.+++.+....+..+|+|.-
T Consensus 267 ~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~ 312 (406)
T TIGR00936 267 EHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL 312 (406)
T ss_pred HHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence 99999999999999999998 9999999999888878899999873
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.9e-13 Score=127.92 Aligned_cols=116 Identities=16% Similarity=0.241 Sum_probs=94.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhc-CHHHh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII-NAECL 241 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI-~~~~L 241 (620)
++|||||+|.||..||++|...|++|++||+++.........+....+++.++++.+|+|++++|..++++.++ +...+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~ 81 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL 81 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence 57999999999999999999999999999998765554455677888999999999999999999988888876 33378
Q ss_pred hccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 242 QHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 242 ~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
+.+++|.++||++....-....+.+.+....+. .+|.
T Consensus 82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vda 118 (163)
T PF03446_consen 82 AGLRPGKIIIDMSTISPETSRELAERLAAKGVR--YVDA 118 (163)
T ss_dssp GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEE--EEEE
T ss_pred hccccceEEEecCCcchhhhhhhhhhhhhccce--eeee
Confidence 889999999999999999999999999876654 7776
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.5e-12 Score=132.17 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=103.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCC-CCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC--HH
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGK-GKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN--AE 239 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~-~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~--~~ 239 (620)
++|||||+|.||.+||++|...|+.|.+||+++.+ .......|.....+..++.+.+|+||+|+|..++.+.++- ..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 47999999999999999999999999999999876 3333345777788899999999999999999999999874 57
Q ss_pred HhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 240 CLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 240 ~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
.++.||||+++||++..+......+.++++.+.+. .||.
T Consensus 81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~--~lDA 119 (286)
T COG2084 81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLE--FLDA 119 (286)
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCc--EEec
Confidence 99999999999999999999999999999998876 7775
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.7e-11 Score=125.69 Aligned_cols=114 Identities=13% Similarity=0.167 Sum_probs=94.8
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhc-C-HHHh
Q 007040 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII-N-AECL 241 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI-~-~~~L 241 (620)
+|||||+|.||..||+.|...|++|++||+++.........+.....++.+++++||+|++|+|.++.++.++ + ...+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 4899999999999999999999999999998754443333445556688899999999999999988888775 3 3467
Q ss_pred hccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEee
Q 007040 242 QHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD 279 (620)
Q Consensus 242 ~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLD 279 (620)
..+++|+++||+++....+..++.+.+++..+. .+|
T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~--~~~ 116 (291)
T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGID--YLD 116 (291)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEe
Confidence 889999999999999999999999999886544 455
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.2e-11 Score=132.18 Aligned_cols=155 Identities=19% Similarity=0.181 Sum_probs=111.2
Q ss_pred ecccCCcc-chHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEE
Q 007040 88 LGSSDRTV-DSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLG 166 (620)
Q Consensus 88 ~gaG~D~V-D~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVG 166 (620)
+++|+..+ ......+++++|.|++..+....-|...+.-.+....+. +.. ...+.|++++
T Consensus 156 TttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai~-------rat------------~~~l~Gk~Vl 216 (425)
T PRK05476 156 TTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTGESLLDGIK-------RAT------------NVLIAGKVVV 216 (425)
T ss_pred chHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHHhhhHHHHH-------Hhc------------cCCCCCCEEE
Confidence 45666443 122223578999999999887765544333322221110 000 0136899999
Q ss_pred EEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCC
Q 007040 167 IVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKP 246 (620)
Q Consensus 167 IIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~ 246 (620)
|+|+|.||+.+|..|+++|++|+++|+.+.........|.. ..++++++..+|+|+.+.. +.++|+.+.|..||+
T Consensus 217 ViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~-v~~l~eal~~aDVVI~aTG----~~~vI~~~~~~~mK~ 291 (425)
T PRK05476 217 VAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFR-VMTMEEAAELGDIFVTATG----NKDVITAEHMEAMKD 291 (425)
T ss_pred EECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCE-ecCHHHHHhCCCEEEECCC----CHHHHHHHHHhcCCC
Confidence 99999999999999999999999999887543322333433 3478999999999998753 567999999999999
Q ss_pred CcEEEEcCCChh-hcHHHHHH
Q 007040 247 GAFLVNTGSSQL-LDDCAVKQ 266 (620)
Q Consensus 247 gAiLINvgRG~v-VDe~AL~~ 266 (620)
|++++|+|+... +|.++|.+
T Consensus 292 GailiNvG~~d~Eid~~~L~~ 312 (425)
T PRK05476 292 GAILANIGHFDNEIDVAALEE 312 (425)
T ss_pred CCEEEEcCCCCCccChHHHhh
Confidence 999999999876 67777654
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.8e-11 Score=124.70 Aligned_cols=116 Identities=16% Similarity=0.219 Sum_probs=95.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC--HHH
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN--AEC 240 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~--~~~ 240 (620)
++|||||+|.||..+|+.+...|++|++||+++.........+.....++++++.+||+|++++|.+..+..++. ...
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~ 82 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI 82 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence 479999999999999999999999999999987543322333455567899999999999999999988888763 346
Q ss_pred hhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 241 L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
+..+++|.++||+++.......++.+.+.+..+. .+|.
T Consensus 83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~--~~d~ 120 (296)
T PRK11559 83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIE--MLDA 120 (296)
T ss_pred hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCc--EEEc
Confidence 7889999999999999998888999999876554 4443
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.8e-11 Score=124.14 Aligned_cols=115 Identities=10% Similarity=0.105 Sum_probs=97.9
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC--HHHh
Q 007040 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN--AECL 241 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~--~~~L 241 (620)
+|||||+|.||.+||+.|...|++|++||+++.........+.....++.++++.||+|++|+|....++.++. ...+
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~ 82 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGVC 82 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccHh
Confidence 79999999999999999999999999999987554433334555667889999999999999999887787764 3467
Q ss_pred hccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 242 QHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 242 ~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
..+++|.++||++++.......+.+.+.+..+. .+|.
T Consensus 83 ~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~--~lda 119 (296)
T PRK15461 83 EGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS--MMDV 119 (296)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEc
Confidence 789999999999999999999999999988766 5775
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.5e-11 Score=123.90 Aligned_cols=115 Identities=20% Similarity=0.271 Sum_probs=96.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcC---CcEEEEcccCChhhHhhcCHH
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAA---SDVISLHCAVTDETIQIINAE 239 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~---sDvVil~lPlT~~T~~lI~~~ 239 (620)
++|||||+|.||..||++|...|++|++||++..........+.....++++++++ +|+|++|+|..+.++.+++ .
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~-~ 79 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIK-D 79 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHH-H
Confidence 36999999999999999999999999999998754433333455666789998876 6999999998888888884 5
Q ss_pred HhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 240 CLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 240 ~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
.+..+++|.++||+++....+..++.+.+....+. .+|.
T Consensus 80 i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vda 118 (299)
T PRK12490 80 LYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVDC 118 (299)
T ss_pred HhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEeC
Confidence 77889999999999999999999999999887664 5774
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.9e-10 Score=120.32 Aligned_cols=115 Identities=23% Similarity=0.297 Sum_probs=97.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcC---CcEEEEcccCChhhHhhcCHH
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAA---SDVISLHCAVTDETIQIINAE 239 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~---sDvVil~lPlT~~T~~lI~~~ 239 (620)
++|||||+|.||..||+.|...|++|.+||+++.........+.....+++++++. +|+|++++|..+.+..++. .
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~-~ 79 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATID-E 79 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHH-H
Confidence 37999999999999999999999999999998755443333456666788888876 6999999998878888874 5
Q ss_pred HhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 240 CLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 240 ~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
.+..+++|.++||++++......++.+.+++..+. .+|.
T Consensus 80 l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~~da 118 (301)
T PRK09599 80 LAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH--FVDV 118 (301)
T ss_pred HHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE--EEeC
Confidence 77889999999999999999999999999988775 5675
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-10 Score=112.19 Aligned_cols=102 Identities=18% Similarity=0.230 Sum_probs=75.2
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
.+.|+++.|+|||.+|+.+|+.|+++|++|++++..+....++..+|... .++++++..+|+|+.+.. ..++|..
T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v-~~~~~a~~~adi~vtaTG----~~~vi~~ 94 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEV-MTLEEALRDADIFVTATG----NKDVITG 94 (162)
T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EE-E-HHHHTTT-SEEEE-SS----SSSSB-H
T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEe-cCHHHHHhhCCEEEECCC----CccccCH
Confidence 47999999999999999999999999999999999875554555566655 489999999999998866 3478899
Q ss_pred HHhhccCCCcEEEEcCCChh-hcHHHHH
Q 007040 239 ECLQHIKPGAFLVNTGSSQL-LDDCAVK 265 (620)
Q Consensus 239 ~~L~~MK~gAiLINvgRG~v-VDe~AL~ 265 (620)
+.|.+||+|+++.|+|.-.. +|-+.|.
T Consensus 95 e~~~~mkdgail~n~Gh~d~Eid~~~L~ 122 (162)
T PF00670_consen 95 EHFRQMKDGAILANAGHFDVEIDVDALE 122 (162)
T ss_dssp HHHHHS-TTEEEEESSSSTTSBTHHHHH
T ss_pred HHHHHhcCCeEEeccCcCceeEeecccc
Confidence 99999999999999998655 4555444
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.4e-10 Score=116.07 Aligned_cols=109 Identities=20% Similarity=0.214 Sum_probs=83.8
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhh-cCCcEEEEcccCChhhHhhcCH
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLL-AASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL-~~sDvVil~lPlT~~T~~lI~~ 238 (620)
-++++|||||+|.||+.+|+.|+.+|++|++||++... ......++....++++++ ..+|+|++|+|.. .+..++..
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~-~~~~vl~~ 111 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAAELGVSFFRDPDDFCEEHPDVVLLCTSIL-STEAVLRS 111 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHHHcCCeeeCCHHHHhhCCCCEEEEecCHH-HHHHHHHh
Confidence 46788999999999999999999999999999988632 212223444556788876 4799999999954 66777754
Q ss_pred HHhhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 239 ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 239 ~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
-....+++++++++++.++-+..+++.+.+..
T Consensus 112 l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~ 143 (304)
T PLN02256 112 LPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE 143 (304)
T ss_pred hhhhccCCCCEEEecCCchHHHHHHHHHhCCC
Confidence 33567899999999999776666677766644
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.6e-10 Score=124.06 Aligned_cols=114 Identities=12% Similarity=0.133 Sum_probs=96.7
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc----CCce---ecCCHHhhhcC---CcEEEEcccCChhhH
Q 007040 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP----SAAR---RMDTLNDLLAA---SDVISLHCAVTDETI 233 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~----~g~~---~~~sL~eLL~~---sDvVil~lPlT~~T~ 233 (620)
+|||||+|.||..||++|...|++|.+|||+....+.... .|.. ...++.++.+. +|+|++++|..+.+.
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~ 87 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVD 87 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHHH
Confidence 5999999999999999999999999999998755442221 1322 45688888876 999999999999999
Q ss_pred hhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 234 QIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
.++ ...+..+++|.++||+|....-+...+.+.+++..+. .||.
T Consensus 88 ~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~--flda 131 (493)
T PLN02350 88 QTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLL--YLGM 131 (493)
T ss_pred HHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCe--EEeC
Confidence 998 5688899999999999999999999999999988776 6664
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-09 Score=114.38 Aligned_cols=115 Identities=15% Similarity=0.147 Sum_probs=95.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC--HHH
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN--AEC 240 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~--~~~ 240 (620)
++|||||+|+||..||+.|...|++|.+||+++. .......+.....+..+++..||+|++++|..+.++.++. ...
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~ 79 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGC 79 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcch
Confidence 3699999999999999999999999999998763 2222334556667888999999999999999888888763 236
Q ss_pred hhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 241 L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
+..+++|.++|+++....-....+.+.+.+..+. .+|.
T Consensus 80 ~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vda 117 (292)
T PRK15059 80 TKASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLDA 117 (292)
T ss_pred hccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEEe
Confidence 7788999999999999999999999999887554 6675
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1e-09 Score=114.22 Aligned_cols=119 Identities=15% Similarity=0.194 Sum_probs=105.5
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhc--C
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII--N 237 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI--~ 237 (620)
...++||+||+|.||..|+..|...|++|++||++..........|....+++.|+.+.||+||.++|.....+.++ .
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~ 112 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGK 112 (327)
T ss_pred cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCC
Confidence 46789999999999999999999999999999999988777777788888999999999999999999999999987 3
Q ss_pred HHHhhccCCCcEE-EEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 238 AECLQHIKPGAFL-VNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 238 ~~~L~~MK~gAiL-INvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
...|+.+++|... |+.+.-...-...|.+++...... .+|.
T Consensus 113 ~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~--~vDA 154 (327)
T KOG0409|consen 113 SGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGR--FVDA 154 (327)
T ss_pred CcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCe--EEec
Confidence 4588888899888 899998888888899999887655 6775
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.3e-10 Score=117.58 Aligned_cols=96 Identities=17% Similarity=0.081 Sum_probs=76.5
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-ccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhc
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII 236 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~-~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI 236 (620)
..|.|++|||||+|+||+++|+.|+.+|++|+++++...... .+...+... .++.+++++||+|++++|.+.. ..++
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~-~s~~eaa~~ADVVvLaVPd~~~-~~V~ 90 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEV-LTVAEAAKWADVIMILLPDEVQ-AEVY 90 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCee-CCHHHHHhcCCEEEEcCCHHHH-HHHH
Confidence 458999999999999999999999999999998877643322 122234444 4899999999999999997755 7777
Q ss_pred CHHHhhccCCCcEEEEcCCC
Q 007040 237 NAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 237 ~~~~L~~MK~gAiLINvgRG 256 (620)
+.+.+..|++|++| -.+-|
T Consensus 91 ~~~I~~~Lk~g~iL-~~a~G 109 (330)
T PRK05479 91 EEEIEPNLKEGAAL-AFAHG 109 (330)
T ss_pred HHHHHhcCCCCCEE-EECCC
Confidence 77888999999988 44444
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.5e-09 Score=125.30 Aligned_cols=113 Identities=18% Similarity=0.158 Sum_probs=88.6
Q ss_pred cceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhc-CCcEEEEcccCChhhHh
Q 007040 156 GMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLA-ASDVISLHCAVTDETIQ 234 (620)
Q Consensus 156 ~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~-~sDvVil~lPlT~~T~~ 234 (620)
.+..+.+++|||||+|.||+.+|+.|+++|++|++||++... ......|+....++++++. .+|+|++|+|. ..+..
T Consensus 363 ~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILavP~-~~~~~ 440 (667)
T PLN02712 363 CVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCTSI-LSTEK 440 (667)
T ss_pred ccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECCCh-HHHHH
Confidence 446778999999999999999999999999999999988532 2222345555678888876 58999999994 67888
Q ss_pred hcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 235 IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 235 lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
++..-.+..||+|+++||++.++-...+++.+.+..
T Consensus 441 vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~ 476 (667)
T PLN02712 441 VLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ 476 (667)
T ss_pred HHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC
Confidence 887655557999999999999985555556555544
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.91 E-value=3e-09 Score=111.39 Aligned_cols=114 Identities=18% Similarity=0.231 Sum_probs=90.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhh---hcCCcEEEEcccCChhhHhhcCHH
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDL---LAASDVISLHCAVTDETIQIINAE 239 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eL---L~~sDvVil~lPlT~~T~~lI~~~ 239 (620)
++|||||+|.||..||+.|...|++|.+||+++.........+.....+++++ +..+|+|++++|.. .+..++ .+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~-~~ 78 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL-EE 78 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH-HH
Confidence 37999999999999999999999999999998755443333333334556554 45689999999987 778887 45
Q ss_pred HhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 240 CLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 240 ~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
....+++|.++||++.+...+...+.+.+.+..+. .+|.
T Consensus 79 l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~--~vda 117 (298)
T TIGR00872 79 LAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH--LLDC 117 (298)
T ss_pred HHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe--EEec
Confidence 77889999999999999888999998888876664 5665
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.2e-09 Score=116.29 Aligned_cols=103 Identities=17% Similarity=0.185 Sum_probs=85.5
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
.+.|++|+|+|+|.||..+|+.++++|++|+++|+.+.....+...|... .++++++..+|+|+.+.. +.++|+.
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~-~~~~e~v~~aDVVI~atG----~~~~i~~ 273 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEV-MTMEEAVKEGDIFVTTTG----NKDIITG 273 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEE-ccHHHHHcCCCEEEECCC----CHHHHHH
Confidence 46899999999999999999999999999999998875544444455543 367888999999998754 4568888
Q ss_pred HHhhccCCCcEEEEcCCChh-hcHHHHHH
Q 007040 239 ECLQHIKPGAFLVNTGSSQL-LDDCAVKQ 266 (620)
Q Consensus 239 ~~L~~MK~gAiLINvgRG~v-VDe~AL~~ 266 (620)
+.|..||+|+++||+|++.+ +|..+|..
T Consensus 274 ~~l~~mk~GgilvnvG~~~~eId~~~L~~ 302 (413)
T cd00401 274 EHFEQMKDGAIVCNIGHFDVEIDVKGLKE 302 (413)
T ss_pred HHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence 88999999999999999876 77777664
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.5e-09 Score=130.61 Aligned_cols=120 Identities=14% Similarity=0.145 Sum_probs=102.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhc--CH
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII--NA 238 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI--~~ 238 (620)
...+|||||+|.||..||++|...|+.|.+||+++.........|+...+++.++.+.||+|++|+|..+.++.++ ..
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~ 82 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE 82 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence 3567999999999999999999999999999998766554445567778899999999999999999999999886 34
Q ss_pred HHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 239 ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 239 ~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
..+..+++|.++|+++....-....+.+.+.+..-....+|.
T Consensus 83 g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDa 124 (1378)
T PLN02858 83 GAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDA 124 (1378)
T ss_pred hHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 678889999999999999999999999999876622247776
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.5e-09 Score=110.19 Aligned_cols=112 Identities=13% Similarity=0.156 Sum_probs=91.8
Q ss_pred EEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC--HHHhhcc
Q 007040 167 IVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN--AECLQHI 244 (620)
Q Consensus 167 IIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~--~~~L~~M 244 (620)
|||+|.||.+||+.|...|++|++||++..........+.....++.+++++||+|++|+|....++.++. ...+..+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 68999999999999999999999999987554433334555567899999999999999998877777762 4567789
Q ss_pred CCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 245 KPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 245 K~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
++|.++||++....-....+.+.+.+..+. .+|.
T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vda 114 (288)
T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMDA 114 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEC
Confidence 999999999988877778888888876554 5774
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.5e-09 Score=116.99 Aligned_cols=114 Identities=14% Similarity=0.175 Sum_probs=96.0
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc----CC--ceecCCHHhhhc---CCcEEEEcccCChhhHh
Q 007040 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP----SA--ARRMDTLNDLLA---ASDVISLHCAVTDETIQ 234 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~----~g--~~~~~sL~eLL~---~sDvVil~lPlT~~T~~ 234 (620)
+|||||+|.||..||++|...|++|.+||++....+.... .+ .....++++++. ++|+|++++|....+..
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~~ 82 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVDE 82 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHHH
Confidence 6999999999999999999999999999998765332111 12 234678999886 48999999999999999
Q ss_pred hcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 235 IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 235 lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
++ ...+..+++|.++||++.+...|...+.+.+.+..+. .||+
T Consensus 83 vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~--flda 125 (470)
T PTZ00142 83 TI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGIL--YLGM 125 (470)
T ss_pred HH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCe--EEcC
Confidence 98 4578889999999999999999999999999998876 6665
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=98.86 E-value=5e-09 Score=129.24 Aligned_cols=118 Identities=14% Similarity=0.111 Sum_probs=99.0
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhc--CHH
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII--NAE 239 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI--~~~ 239 (620)
.++|||||+|.||.+||++|...|++|++||+++.........+.....++.+++++||+|++|+|..++++.++ ...
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g 403 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG 403 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence 478999999999999999999999999999998755443333455556789999999999999999999999887 346
Q ss_pred HhhccCCCcEEEEcCCChhhcHHHHHHHHHc--CCcceeEeecC
Q 007040 240 CLQHIKPGAFLVNTGSSQLLDDCAVKQLLID--GTLAGCALDGA 281 (620)
Q Consensus 240 ~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~--G~I~GAaLDV~ 281 (620)
.+..+++|.++||++....-....+.+.+.+ ..+ ..+|..
T Consensus 404 ~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~--~~lDAP 445 (1378)
T PLN02858 404 AVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDI--KLVDAP 445 (1378)
T ss_pred HHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCc--EEEEcc
Confidence 7889999999999999998888899999887 444 367753
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.1e-08 Score=106.01 Aligned_cols=140 Identities=15% Similarity=0.113 Sum_probs=87.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCce-ecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR-RMDTLNDLLAASDVISLHCAVTDETIQIINAECL 241 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~-~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L 241 (620)
++|||||+|.||+.+|..|+..|++|++||++..........+.. ...+..+.+.+||+|++++|... +..++ .+..
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~-~~~~~-~~l~ 78 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGL-LLPPS-EQLI 78 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHH-HHHHH-HHHH
Confidence 369999999999999999999999999999976443322222321 12222356789999999999543 33343 4566
Q ss_pred hccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCC--CCCCCccccCCCcEEEcCCCCC
Q 007040 242 QHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG--PQWMEAWVREMPNVLILPRSAD 305 (620)
Q Consensus 242 ~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~--P~~~~spL~~~pNVIlTPHiAg 305 (620)
..+++++++++++.-+.--.+++.+.. ...+.++.+-..+. ......-|+...++++||+-..
T Consensus 79 ~~l~~~~ii~d~~Svk~~~~~~~~~~~-~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~ 143 (279)
T PRK07417 79 PALPPEAIVTDVGSVKAPIVEAWEKLH-PRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENT 143 (279)
T ss_pred HhCCCCcEEEeCcchHHHHHHHHHHhh-CCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCC
Confidence 778999999999986643333222221 11222111111110 0011223677788999997654
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.2e-08 Score=113.59 Aligned_cols=113 Identities=13% Similarity=0.188 Sum_probs=92.4
Q ss_pred EEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccC-----CceecCCHHhhh---cCCcEEEEcccCChhhHhhc
Q 007040 165 LGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPS-----AARRMDTLNDLL---AASDVISLHCAVTDETIQII 236 (620)
Q Consensus 165 VGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~-----g~~~~~sL~eLL---~~sDvVil~lPlT~~T~~lI 236 (620)
|||||+|.||..||++|...|++|++||++....+..... ++....++.++. .++|+|++++|..+.+..++
T Consensus 2 IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~Vi 81 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAVI 81 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHHH
Confidence 8999999999999999999999999999987554422211 133455777766 46899999999988888888
Q ss_pred CHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 237 ~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
...+..+++|.++||++.....|...+.+.+.+..+. .+|+
T Consensus 82 -~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~--fvda 122 (467)
T TIGR00873 82 -NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGIL--FVGS 122 (467)
T ss_pred -HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCE--EEcC
Confidence 4577889999999999999999999999999887765 6665
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.8e-08 Score=108.71 Aligned_cols=134 Identities=18% Similarity=0.208 Sum_probs=95.8
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCC-ccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHH
Q 007040 163 LVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGK-VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~-~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~ 240 (620)
++|+||| +|.||+.+|+.|+..|++|++|+++..... .....++....++.+.+..+|+|++++|.. .+..++ .+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~-~~~~vl-~~l 78 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPIN-VTEDVI-KEV 78 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHH-HHHHHH-HHH
Confidence 4799997 999999999999999999999998764421 112234444567888999999999999964 455665 456
Q ss_pred hhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCC-CCccccCCCcEEEcCCC
Q 007040 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQW-MEAWVREMPNVLILPRS 303 (620)
Q Consensus 241 L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~-~~spL~~~pNVIlTPHi 303 (620)
...+++++++++++..+....+++.+.+..+ . ..+.. +|.. +..+++....++++|+-
T Consensus 79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~-~--~~V~~--HPmaGp~~~~~~g~~~il~p~~ 137 (437)
T PRK08655 79 APHVKEGSLLMDVTSVKERPVEAMEEYAPEG-V--EILPT--HPMFGPRTPSLKGQVVILTPTE 137 (437)
T ss_pred HhhCCCCCEEEEcccccHHHHHHHHHhcCCC-C--EEEEc--CCCCCCCCcccCCCEEEEecCC
Confidence 6778999999999987655556666655432 1 12222 2332 22356777889999965
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.78 E-value=3e-08 Score=104.00 Aligned_cols=139 Identities=18% Similarity=0.175 Sum_probs=90.5
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCCccccCCc--eecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 162 GLVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGKVTFPSAA--RRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~--~V~~~dr~~~~~~~~~~~g~--~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
.++|+|||+|.||..+|..|+..|. +|++||++..........+. ....++++++..+|+|++++|.. .+..++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~-~~~~v~- 83 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG-ASGAVA- 83 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH-HHHHHH-
Confidence 4689999999999999999998885 89999998643332222222 23356788899999999999964 233333
Q ss_pred HHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCC--C-----CCCCCccccCCCcEEEcCCCCC
Q 007040 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE--G-----PQWMEAWVREMPNVLILPRSAD 305 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E--~-----P~~~~spL~~~pNVIlTPHiAg 305 (620)
.+....++++.++++++....--.+++.+.+.. .+ ..+..+. . |......|+...+++++|+.+.
T Consensus 84 ~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~-~~--~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~ 155 (307)
T PRK07502 84 AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPE-GV--HFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGT 155 (307)
T ss_pred HHHHhhCCCCCEEEeCccchHHHHHHHHHhCCC-CC--eEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCC
Confidence 345567899999999987653333333333322 11 1333311 0 1112346777788999996544
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.3e-08 Score=105.44 Aligned_cols=136 Identities=20% Similarity=0.185 Sum_probs=90.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc--ccCCce--ecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT--FPSAAR--RMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~--~~~g~~--~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
++|+|||+|.||.++|+.|+..|+.|.+|++........ ...+.. ...++++++++||+|++++|.. .+..++.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~-~~~~vl~- 78 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVD-ATAALLA- 78 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHH-HHHHHHH-
Confidence 469999999999999999999999888888766432211 111221 2356788899999999999974 5666664
Q ss_pred HHhh-ccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCC---------CCccccCCCcEEEcCCCCC
Q 007040 239 ECLQ-HIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQW---------MEAWVREMPNVLILPRSAD 305 (620)
Q Consensus 239 ~~L~-~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~---------~~spL~~~pNVIlTPHiAg 305 (620)
+... .+++++++++++.-+.-..+++.+.+.. .. -.+.. +|.+ ....|+.....++||+-..
T Consensus 79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~-~~--~~ig~--HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~ 150 (359)
T PRK06545 79 ELADLELKPGVIVTDVGSVKGAILAEAEALLGD-LI--RFVGG--HPMAGSHKSGVAAARADLFENAPWVLTPDDHT 150 (359)
T ss_pred HHhhcCCCCCcEEEeCccccHHHHHHHHHhcCC-CC--eEEee--CCcCcCchhhHHHhcHHHHCCCcEEEecCCCC
Confidence 3333 4889999999998775444444433221 11 23333 2221 2345777788999996543
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.2e-08 Score=102.46 Aligned_cols=82 Identities=18% Similarity=0.225 Sum_probs=69.1
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHH
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~ 240 (620)
.+++|||||+|.||.++|+.|...|++|.+|+++.. .++.++++++|+|++++|. +....++.. .
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------~~~~~~~~~advvi~~vp~-~~~~~v~~~-l 67 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------LSLAAVLADADVIVSAVSM-KGVRPVAEQ-V 67 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------CCHHHHHhcCCEEEEECCh-HHHHHHHHH-H
Confidence 467899999999999999999999999999998752 3688899999999999997 477777743 2
Q ss_pred hh-ccCCCcEEEEcCCCh
Q 007040 241 LQ-HIKPGAFLVNTGSSQ 257 (620)
Q Consensus 241 L~-~MK~gAiLINvgRG~ 257 (620)
.. .+++++++|++++|-
T Consensus 68 ~~~~~~~~~ivi~~s~gi 85 (308)
T PRK14619 68 QALNLPPETIIVTATKGL 85 (308)
T ss_pred HHhcCCCCcEEEEeCCcc
Confidence 23 478999999998753
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.9e-08 Score=100.24 Aligned_cols=129 Identities=19% Similarity=0.148 Sum_probs=88.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc-----------cccC------------C-ceecCCHHhhhcC
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV-----------TFPS------------A-ARRMDTLNDLLAA 218 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~-----------~~~~------------g-~~~~~sL~eLL~~ 218 (620)
++|||||+|.||..||..+...|++|++||++...... .... + .....++ +.++.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~ 83 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EELRD 83 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHhCC
Confidence 57999999999999999999999999999998744220 0000 1 1223344 56799
Q ss_pred CcEEEEcccCChhhHhhcCHHHhhccCCCcEEE-EcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcE
Q 007040 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLV-NTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNV 297 (620)
Q Consensus 219 sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLI-NvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNV 297 (620)
||+|+.|+|..++.+..+-.+....++++++|+ |++.-.+ ..+.+.+.. ....+++-.+. ||. ..+-+
T Consensus 84 aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~---~~l~~~~~~-~~r~~g~h~~~-pp~------~~~lv 152 (295)
T PLN02545 84 ADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISI---TRLASATQR-PQQVIGMHFMN-PPP------IMKLV 152 (295)
T ss_pred CCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCC-CcceEEEeccC-Ccc------cCceE
Confidence 999999999999998888777778899999987 7777643 345555432 12223333333 332 13446
Q ss_pred EEcCCC
Q 007040 298 LILPRS 303 (620)
Q Consensus 298 IlTPHi 303 (620)
.+.|+-
T Consensus 153 eiv~g~ 158 (295)
T PLN02545 153 EIIRGA 158 (295)
T ss_pred EEeCCC
Confidence 677763
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.3e-07 Score=98.48 Aligned_cols=129 Identities=13% Similarity=0.068 Sum_probs=90.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-------c-----------------CCceecCCHHhhhcC
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF-------P-----------------SAARRMDTLNDLLAA 218 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~-------~-----------------~g~~~~~sL~eLL~~ 218 (620)
++|+|||+|.||..+|..|...|++|++||+++....... . .......++.+.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 4799999999999999999999999999999864432110 0 012334678889999
Q ss_pred CcEEEEcccCChhhHhhcCHHHhhccCCCcEE-EEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcE
Q 007040 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFL-VNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNV 297 (620)
Q Consensus 219 sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiL-INvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNV 297 (620)
||+|+.|+|...+.+..+-.+..+.++++++| +|++...+ ..+.+.+.. .-...++..+ .|+. ..+=+
T Consensus 82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~~-~~r~~g~h~~-~Pv~------~~~Lv 150 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTKR-PERVIAMHFF-NPVH------KMKLV 150 (288)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCC-cccEEEEecC-CCcc------cCceE
Confidence 99999999988877665555566778999977 78887554 445555432 3333466555 4443 23445
Q ss_pred EEcCC
Q 007040 298 LILPR 302 (620)
Q Consensus 298 IlTPH 302 (620)
.+.|+
T Consensus 151 e~v~g 155 (288)
T PRK09260 151 ELIRG 155 (288)
T ss_pred EEeCC
Confidence 56664
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.4e-08 Score=114.25 Aligned_cols=109 Identities=19% Similarity=0.169 Sum_probs=81.9
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhh-cCCcEEEEcccCChhhHhhcCH
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLL-AASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL-~~sDvVil~lPlT~~T~~lI~~ 238 (620)
-+.++|||||+|.||+.+|+.|+.+|++|++||++... ..+...++....++++++ ..+|+|++|+|. ..+..++..
T Consensus 50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~ 127 (667)
T PLN02712 50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKS 127 (667)
T ss_pred CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHh
Confidence 35578999999999999999999999999999987432 222234555566788866 569999999995 467788866
Q ss_pred HHhhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 239 ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 239 ~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
-.+..|++|++|+|+++-+..--+++.+.+..
T Consensus 128 l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~ 159 (667)
T PLN02712 128 LPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPE 159 (667)
T ss_pred hhhhcCCCCeEEEECCCCcHHHHHHHHHhcCC
Confidence 44567999999999987664334445555433
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.7e-07 Score=100.05 Aligned_cols=91 Identities=19% Similarity=0.149 Sum_probs=71.7
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHH
Q 007040 161 RGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAE 239 (620)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~ 239 (620)
..++|+||| +|.||+.+|+.|+..|+.|.+||+... .++++++.+||+|++|+|... +..++. +
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-------------~~~~~~~~~aDlVilavP~~~-~~~~~~-~ 161 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-------------DRAEDILADAGMVIVSVPIHL-TEEVIA-R 161 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-------------hhHHHHHhcCCEEEEeCcHHH-HHHHHH-H
Confidence 457899999 999999999999999999999998531 356788899999999999774 455553 3
Q ss_pred HhhccCCCcEEEEcCCChhhcHHHHHHH
Q 007040 240 CLQHIKPGAFLVNTGSSQLLDDCAVKQL 267 (620)
Q Consensus 240 ~L~~MK~gAiLINvgRG~vVDe~AL~~A 267 (620)
+..+++|+++++++..+..-..++.+.
T Consensus 162 -l~~l~~~~iv~Dv~SvK~~~~~~~~~~ 188 (374)
T PRK11199 162 -LPPLPEDCILVDLTSVKNAPLQAMLAA 188 (374)
T ss_pred -HhCCCCCcEEEECCCccHHHHHHHHHh
Confidence 444999999999988654444444444
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.5e-08 Score=100.27 Aligned_cols=136 Identities=20% Similarity=0.225 Sum_probs=92.5
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEE--EEECCCCCCCCccccCCcee--cCC-HHhhhcCCcEEEEcccCChhhHhhc
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSV--LYFDVPEGKGKVTFPSAARR--MDT-LNDLLAASDVISLHCAVTDETIQII 236 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V--~~~dr~~~~~~~~~~~g~~~--~~s-L~eLL~~sDvVil~lPlT~~T~~lI 236 (620)
-++|+|+|+|.||+.+|+.++..|+.| +++|++..........++.. ..+ +.+.+..+|+|++++|-. .|..++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~-~~~~~l 81 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIE-ATEEVL 81 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHH-HHHHHH
Confidence 367999999999999999999999976 55555543333333333322 123 367778899999999955 455555
Q ss_pred CHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCC---CCccccCCCcEEEcCCCC
Q 007040 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQW---MEAWVREMPNVLILPRSA 304 (620)
Q Consensus 237 ~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~---~~spL~~~pNVIlTPHiA 304 (620)
. +....+|+|+++++++.-+----+++.+.+.++. ...+ -+|.. ...+++..-.+|+||.-.
T Consensus 82 ~-~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg----~HPM~G~~~~~~lf~~~~~vltp~~~ 146 (279)
T COG0287 82 K-ELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVG----GHPMFGPEADAGLFENAVVVLTPSEG 146 (279)
T ss_pred H-HhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeEe----cCCCCCCcccccccCCCEEEEcCCCC
Confidence 3 3444899999999999987666666666654421 1111 13443 345888888999999543
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.1e-07 Score=98.26 Aligned_cols=130 Identities=18% Similarity=0.198 Sum_probs=82.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCCccccCCce-ecCCHHhhhcCCcEEEEcccCChhhHhhcCHH
Q 007040 163 LVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGKVTFPSAAR-RMDTLNDLLAASDVISLHCAVTDETIQIINAE 239 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~--~V~~~dr~~~~~~~~~~~g~~-~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~ 239 (620)
++|||||+|.||+.+|..|+..|+ +|++||++..........+.. ...++.++. ++|+|++++|... +..++ .+
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~-~~~~~-~~ 77 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDA-IIEIL-PK 77 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHH-HHHHH-HH
Confidence 369999999999999999998775 899999986443322223332 234677765 5999999999653 44444 34
Q ss_pred HhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCC---------CCCccccCCCcEEEcCCC
Q 007040 240 CLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQ---------WMEAWVREMPNVLILPRS 303 (620)
Q Consensus 240 ~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~---------~~~spL~~~pNVIlTPHi 303 (620)
... ++++++++++|.-. ..+.+.+... ..+..++. +|. .....+++-..++++|.-
T Consensus 78 l~~-l~~~~iv~d~gs~k----~~i~~~~~~~-~~~~~v~~--hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~ 142 (275)
T PRK08507 78 LLD-IKENTTIIDLGSTK----AKIIESVPKH-IRKNFIAA--HPMAGTENSGPKAAIKGLYEGKVVVLCDVE 142 (275)
T ss_pred Hhc-cCCCCEEEECccch----HHHHHHHHHh-cCCCEEec--CCcCcCchhhHHhccHHHhCCCeEEEecCC
Confidence 555 89999999987632 3344444332 11123333 232 112235565567888854
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.9e-07 Score=95.62 Aligned_cols=102 Identities=15% Similarity=0.215 Sum_probs=77.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC----EEEEE-CCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 163 LVLGIVGRSASARALATRSLSFKM----SVLYF-DVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~----~V~~~-dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++|||||+|+||.+||+.|...|+ +|++| +++..........++....+..+++.+||+|++++| ......++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl~ 79 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVLT 79 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHHH
Confidence 479999999999999999998888 89999 887654333333456666788889999999999997 555666663
Q ss_pred HHHhhccCCCcEEEEcCCChhhcHHHHHHHH
Q 007040 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLL 268 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL 268 (620)
+....++++.++|++.-| +..+.+.+.+
T Consensus 80 -~l~~~~~~~~~iIs~~~g--~~~~~l~~~~ 107 (266)
T PLN02688 80 -ELRPLLSKDKLLVSVAAG--ITLADLQEWA 107 (266)
T ss_pred -HHHhhcCCCCEEEEecCC--CcHHHHHHHc
Confidence 455668899999988665 3555555554
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.1e-07 Score=97.34 Aligned_cols=162 Identities=18% Similarity=0.127 Sum_probs=103.9
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc-----------cccCC-------------ceecCCHHhhhcC
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV-----------TFPSA-------------ARRMDTLNDLLAA 218 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~-----------~~~~g-------------~~~~~sL~eLL~~ 218 (620)
++|||||.|.||..||..+...|++|+.||+++...+. ....+ .....++ +.++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence 37999999999999999999999999999998754331 11111 1145677 45799
Q ss_pred CcEEEEcccCChhhHhhcCHHHhhcc-CCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcE
Q 007040 219 SDVISLHCAVTDETIQIINAECLQHI-KPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNV 297 (620)
Q Consensus 219 sDvVil~lPlT~~T~~lI~~~~L~~M-K~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNV 297 (620)
||+|+-++|.+.+.+.-+-...-+.+ +++++|++.+.+-.+.+ +..++.. .-..+++..|.+ ++ .+|-|
T Consensus 85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~--la~~~~~-~~r~~g~hf~~P-~~------~~~lv 154 (286)
T PRK07819 85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMK--LAAATKR-PGRVLGLHFFNP-VP------VLPLV 154 (286)
T ss_pred CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH--HHhhcCC-CccEEEEecCCC-cc------cCceE
Confidence 99999999999998887765444445 89999998877654443 3344332 222345555553 32 23445
Q ss_pred EEcCCCCCCcHHHHHHHHHHHHHHHHHHHH--cCCCCCccccCCCCccCC
Q 007040 298 LILPRSADYSEEVWMEIRDKAISVLQTFFF--DGVIPKNAISDTEGCENE 345 (620)
Q Consensus 298 IlTPHiAg~T~ea~~~~~~~a~enL~~~L~--~G~~p~nvVn~~~~y~~~ 345 (620)
=|+||.+.. +++ ++.+..|+. -|+.|..+ +...|+..+
T Consensus 155 Elv~~~~T~-~~~--------~~~~~~~~~~~lgk~pv~v-~d~pGfi~n 194 (286)
T PRK07819 155 ELVPTLVTS-EAT--------VARAEEFASDVLGKQVVRA-QDRSGFVVN 194 (286)
T ss_pred EEeCCCCCC-HHH--------HHHHHHHHHHhCCCCceEe-cCCCChHHH
Confidence 566655443 333 333344432 36666664 555666443
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=98.61 E-value=7.1e-08 Score=102.39 Aligned_cols=96 Identities=16% Similarity=0.120 Sum_probs=70.8
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC-CCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG-KGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~-~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
|.|++|||||+|+||.++|+.|+.+|++|+++++... ........|... .++.+++++||+|++++|.... ...+..
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~-~s~~ea~~~ADiVvLaVpp~~~-~~~v~~ 78 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKV-GTVEEAIPQADLIMNLLPDEVQ-HEVYEA 78 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEE-CCHHHHHhcCCEEEEeCCcHhH-HHHHHH
Confidence 4789999999999999999999999999887655432 222222334443 4688899999999999995533 344556
Q ss_pred HHhhccCCCcEEEEcCCChh
Q 007040 239 ECLQHIKPGAFLVNTGSSQL 258 (620)
Q Consensus 239 ~~L~~MK~gAiLINvgRG~v 258 (620)
+....|+++. +|.++-|--
T Consensus 79 ei~~~l~~g~-iVs~aaG~~ 97 (314)
T TIGR00465 79 EIQPLLKEGK-TLGFSHGFN 97 (314)
T ss_pred HHHhhCCCCc-EEEEeCCcc
Confidence 6777888886 777777643
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1e-06 Score=95.56 Aligned_cols=121 Identities=18% Similarity=0.160 Sum_probs=83.6
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhh-CCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 161 RGLVLGIVGR-SASARALATRSLS-FKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~Lka-fG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
.-.+|+|||+ |.||+.+|+.|+. +|.+|++||+... ...++.+++++||+|++|+|.. .+..+|..
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-----------~~~~~~~~v~~aDlVilavPv~-~~~~~l~~ 70 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-----------GSLDPATLLQRADVLIFSAPIR-HTAALIEE 70 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-----------ccCCHHHHhcCCCEEEEeCCHH-HHHHHHHH
Confidence 4578999999 9999999999995 6999999998421 1236788899999999999955 44455532
Q ss_pred --HHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecC-CCCCCC--CccccCCCcEEEcCC
Q 007040 239 --ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGA-EGPQWM--EAWVREMPNVLILPR 302 (620)
Q Consensus 239 --~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~-E~P~~~--~spL~~~pNVIlTPH 302 (620)
.....++++++++++++-+.--.+++ +.. .. .+. -+|... .+.+++.-++|+||.
T Consensus 71 l~~~~~~l~~~~iVtDVgSvK~~i~~~~---~~~-~~-----~fVG~HPMaG~E~s~lf~g~~~iltp~ 130 (370)
T PRK08818 71 YVALAGGRAAGQLWLDVTSIKQAPVAAM---LAS-QA-----EVVGLHPMTAPPKSPTLKGRVMVVCEA 130 (370)
T ss_pred HhhhhcCCCCCeEEEECCCCcHHHHHHH---Hhc-CC-----CEEeeCCCCCCCCCcccCCCeEEEeCC
Confidence 11234899999999999763222222 111 11 111 135432 246788889999996
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.6e-07 Score=94.38 Aligned_cols=138 Identities=18% Similarity=0.147 Sum_probs=89.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-----------cCC-------------ceecCCHHhhhcC
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF-----------PSA-------------ARRMDTLNDLLAA 218 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~-----------~~g-------------~~~~~sL~eLL~~ 218 (620)
++|+|||.|.||..||..+...|++|++||++........ ..+ +....+++ .+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 83 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD 83 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence 5799999999999999999999999999999864322100 011 23345665 4789
Q ss_pred CcEEEEcccCChhhHhhcCHHHhhccCCCcEEE-EcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcE
Q 007040 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLV-NTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNV 297 (620)
Q Consensus 219 sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLI-NvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNV 297 (620)
||+|+.++|...+.+..+-.+....++++++|+ |++.-.+ .++.+.+.. .-...++-.+. |++ -.+-+
T Consensus 84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---s~la~~~~~-~~r~~g~h~~~-p~~------~~~~v 152 (292)
T PRK07530 84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISI---TRLASATDR-PERFIGIHFMN-PVP------VMKLV 152 (292)
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCC-cccEEEeeccC-Ccc------cCceE
Confidence 999999999887766654456777889999998 6666443 356666532 12223444444 322 12335
Q ss_pred EEcCCCCCCcHHHHHH
Q 007040 298 LILPRSADYSEEVWME 313 (620)
Q Consensus 298 IlTPHiAg~T~ea~~~ 313 (620)
-+.+|.++ +++..+.
T Consensus 153 ei~~g~~t-~~~~~~~ 167 (292)
T PRK07530 153 ELIRGIAT-DEATFEA 167 (292)
T ss_pred EEeCCCCC-CHHHHHH
Confidence 56776543 4444433
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.1e-07 Score=97.82 Aligned_cols=105 Identities=16% Similarity=0.199 Sum_probs=81.4
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc--------------------ccCCceecCCHHhhhcCCcEE
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT--------------------FPSAARRMDTLNDLLAASDVI 222 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~--------------------~~~g~~~~~sL~eLL~~sDvV 222 (620)
++|||||.|.||..+|..+...|++|+.||+.+...... ....+....+++++++.||+|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence 579999999999999999999999999999986422100 001123456898999999999
Q ss_pred EEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHH
Q 007040 223 SLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269 (620)
Q Consensus 223 il~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~ 269 (620)
+-++|...+.+.-+-++.-+.++++++| .++.. -+...++.+.+.
T Consensus 88 iEavpE~l~vK~~lf~~l~~~~~~~aIl-aSnTS-~l~~s~la~~~~ 132 (321)
T PRK07066 88 QESAPEREALKLELHERISRAAKPDAII-ASSTS-GLLPTDFYARAT 132 (321)
T ss_pred EECCcCCHHHHHHHHHHHHHhCCCCeEE-EECCC-ccCHHHHHHhcC
Confidence 9999999999998878888999999954 44444 346666777764
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.4e-07 Score=97.44 Aligned_cols=106 Identities=15% Similarity=0.137 Sum_probs=76.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-------------------cCC-ceecCCHHhhhcCCcEE
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF-------------------PSA-ARRMDTLNDLLAASDVI 222 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~-------------------~~g-~~~~~sL~eLL~~sDvV 222 (620)
++|||||+|.||..+|..|...|++|++||++........ ..+ .....++.+++++||+|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 3699999999999999999999999999999764322100 012 33456788889999999
Q ss_pred EEcccCChh------hHhhc--CHHHhhccCCCcEEEEcCCChhhcHHHHHHHH
Q 007040 223 SLHCAVTDE------TIQII--NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLL 268 (620)
Q Consensus 223 il~lPlT~~------T~~lI--~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL 268 (620)
++++|.... ...+. -......+++|.++|+.+.-.+-....+.+.+
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~ 134 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPI 134 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHH
Confidence 999996532 11222 23456678999999999875555555665433
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.7e-07 Score=99.89 Aligned_cols=103 Identities=18% Similarity=0.240 Sum_probs=87.3
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
-+.||++.|.|||..|+.+|.+|++.|++|++....+-..-++..+|... .++++....+|+++.+.- ++++|..
T Consensus 206 liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V-~~m~~Aa~~gDifiT~TG----nkdVi~~ 280 (420)
T COG0499 206 LLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRV-MTMEEAAKTGDIFVTATG----NKDVIRK 280 (420)
T ss_pred eecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEE-EEhHHhhhcCCEEEEccC----CcCccCH
Confidence 47999999999999999999999999999999998875555455555554 489999999999998876 6689999
Q ss_pred HHhhccCCCcEEEEcCCChh-hcHHHHHH
Q 007040 239 ECLQHIKPGAFLVNTGSSQL-LDDCAVKQ 266 (620)
Q Consensus 239 ~~L~~MK~gAiLINvgRG~v-VDe~AL~~ 266 (620)
++|..||+|+++-|.|.-.+ ||...|.+
T Consensus 281 eh~~~MkDgaIl~N~GHFd~EI~~~~L~~ 309 (420)
T COG0499 281 EHFEKMKDGAILANAGHFDVEIDVAGLEE 309 (420)
T ss_pred HHHHhccCCeEEecccccceeccHHHHHH
Confidence 99999999999999997666 56666554
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.52 E-value=9.4e-07 Score=92.00 Aligned_cols=140 Identities=10% Similarity=0.027 Sum_probs=92.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-------------------------cCCceecCCHHhhhc
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF-------------------------PSAARRMDTLNDLLA 217 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~-------------------------~~g~~~~~sL~eLL~ 217 (620)
++|+|||.|.||..+|..+...|++|+.||++........ ...+....++++++.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 4799999999999999999999999999998764221100 012234568888899
Q ss_pred CCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcE
Q 007040 218 ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNV 297 (620)
Q Consensus 218 ~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNV 297 (620)
.||+|+.++|...+.+.-+-.+....++++++|+..+++- ....+.+.+... -...++-. .+| .+.+|.|
T Consensus 84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~--~~~~~~~~~~~~-~r~vg~Hf-~~p------~~~~~lv 153 (287)
T PRK08293 84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTL--LPSQFAEATGRP-EKFLALHF-ANE------IWKNNTA 153 (287)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccC--CHHHHHhhcCCc-ccEEEEcC-CCC------CCcCCeE
Confidence 9999999999776655554455667789999885444432 334566665432 22233322 123 3467888
Q ss_pred EEcCCCCCCcHHHHHH
Q 007040 298 LILPRSADYSEEVWME 313 (620)
Q Consensus 298 IlTPHiAg~T~ea~~~ 313 (620)
.+.|+-.. ++++.+.
T Consensus 154 evv~~~~t-~~~~~~~ 168 (287)
T PRK08293 154 EIMGHPGT-DPEVFDT 168 (287)
T ss_pred EEeCCCCC-CHHHHHH
Confidence 89986554 3444333
|
|
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=98.50 E-value=9.8e-08 Score=104.98 Aligned_cols=93 Identities=14% Similarity=0.092 Sum_probs=69.9
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCC------CCCCCccccCCceecCCHHhhhcCCcEEEEcccCCh
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVP------EGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTD 230 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~------~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~ 230 (620)
...|.|++|+|||+|.+|.+-|..|+-.|++|++--|. ......+...|. .+.++.++++.||+|++.+|.+
T Consensus 31 ~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF-~v~~~~Ea~~~ADvVviLlPDt- 108 (487)
T PRK05225 31 ASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGF-KVGTYEELIPQADLVINLTPDK- 108 (487)
T ss_pred hHHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCC-ccCCHHHHHHhCCEEEEcCChH-
Confidence 35799999999999999997777777777776633332 212121122333 3468999999999999999999
Q ss_pred hhHhhcCHHHhhccCCCcEEEE
Q 007040 231 ETIQIINAECLQHIKPGAFLVN 252 (620)
Q Consensus 231 ~T~~lI~~~~L~~MK~gAiLIN 252 (620)
. .+.|..+.+..||+|++|.=
T Consensus 109 ~-q~~v~~~i~p~LK~Ga~L~f 129 (487)
T PRK05225 109 Q-HSDVVRAVQPLMKQGAALGY 129 (487)
T ss_pred H-HHHHHHHHHhhCCCCCEEEe
Confidence 3 77778999999999998863
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.7e-07 Score=98.17 Aligned_cols=105 Identities=10% Similarity=0.055 Sum_probs=77.3
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCc----------------eecCCHHhhhcCCcEEEEc
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA----------------RRMDTLNDLLAASDVISLH 225 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~----------------~~~~sL~eLL~~sDvVil~ 225 (620)
.++|||||+|.||..+|..|.. |++|++||++....+.. ..|. ....+..+.+++||+|++|
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l-~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~ 83 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILEL-KNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIIT 83 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHH-HCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEE
Confidence 4789999999999999999877 79999999987543311 1111 1222333578999999999
Q ss_pred ccCC------hhhHhhc--CHHHhhccCCCcEEEEcCCChhhcHHHHHHHH
Q 007040 226 CAVT------DETIQII--NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLL 268 (620)
Q Consensus 226 lPlT------~~T~~lI--~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL 268 (620)
+|.. ++...++ .......+++|.++|+.+.-.+-..+.+++.+
T Consensus 84 Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~ 134 (425)
T PRK15182 84 VPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPI 134 (425)
T ss_pred cCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHH
Confidence 9966 3445555 34567889999999999998887777654444
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.2e-07 Score=92.47 Aligned_cols=117 Identities=21% Similarity=0.294 Sum_probs=100.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhh---hcCCcEEEEcccCChhhHhhcCHH
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDL---LAASDVISLHCAVTDETIQIINAE 239 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eL---L~~sDvVil~lPlT~~T~~lI~~~ 239 (620)
++||.||+|+||..|+++|...|+.|++||+++...+.....+.....+|+++ |...-+|.+++|..+.|..+|+ +
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~-~ 79 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVID-D 79 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHH-H
Confidence 46999999999999999999999999999999877665555666666777766 5567999999999988888775 4
Q ss_pred HhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCC
Q 007040 240 CLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE 282 (620)
Q Consensus 240 ~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E 282 (620)
+-..|.+|-++|+-|-...-|....++.|.+..|. .|||-.
T Consensus 80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~GT 120 (300)
T COG1023 80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDVGT 120 (300)
T ss_pred HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEeccC
Confidence 66788999999999999999999999999999996 889843
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.7e-07 Score=101.57 Aligned_cols=149 Identities=10% Similarity=0.135 Sum_probs=97.3
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc-CCc------eecCCHHhhhcCCcEEEEcccCC-hh
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP-SAA------RRMDTLNDLLAASDVISLHCAVT-DE 231 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~-~g~------~~~~sL~eLL~~sDvVil~lPlT-~~ 231 (620)
+.+.++.|||+|.+|+.+|+.|+++|++|.++|++......... .+. .....+.+.+..+|+|+.+++.+ ..
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~ 244 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAK 244 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCC
Confidence 56788999999999999999999999999999987543221100 011 11235778889999999998653 23
Q ss_pred hHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcE--EEcCCCCCCcH-
Q 007040 232 TIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNV--LILPRSADYSE- 308 (620)
Q Consensus 232 T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNV--IlTPHiAg~T~- 308 (620)
+..+|+.+.++.||++++|||++-. ..|.+.+ ..|...+.|.....+| +.-||+.+.-+
T Consensus 245 ~p~lit~~~l~~mk~g~vIvDva~d------------~GG~~e~------~~~t~~d~p~~~~~Gv~~~~v~nlP~~~p~ 306 (370)
T TIGR00518 245 APKLVSNSLVAQMKPGAVIVDVAID------------QGGCVET------SRPTTHDQPTYAVHDVVHYCVANMPGAVPK 306 (370)
T ss_pred CCcCcCHHHHhcCCCCCEEEEEecC------------CCCCccC------CcCCCCCCCEEEECCeEEEEeCCcccccHH
Confidence 4568999999999999999999731 1122211 1133334455544444 56678777654
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007040 309 EVWMEIRDKAISVLQTFF 326 (620)
Q Consensus 309 ea~~~~~~~a~enL~~~L 326 (620)
++...+.+.+..-|..+.
T Consensus 307 ~aS~~~~~~l~~~l~~~~ 324 (370)
T TIGR00518 307 TSTYALTNATMPYVLELA 324 (370)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.4e-06 Score=91.68 Aligned_cols=134 Identities=21% Similarity=0.213 Sum_probs=84.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc-----------cccCC-------------ceecCCHHhhhcC
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV-----------TFPSA-------------ARRMDTLNDLLAA 218 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~-----------~~~~g-------------~~~~~sL~eLL~~ 218 (620)
++|+|||+|.||.++|..|...|++|++||++...... ....+ +....++.++++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 46999999999999999999999999999998632221 00111 2345688889999
Q ss_pred CcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEE
Q 007040 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVL 298 (620)
Q Consensus 219 sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVI 298 (620)
||+|+.++|...+....+-.+.-...++..+++ ++... .....+.+.+.... . ...|-+-+|++. .|=|.
T Consensus 83 ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~-ssts~-~~~~~la~~~~~~~-~-~~~~hp~~p~~~------~~lve 152 (308)
T PRK06129 83 ADYVQESAPENLELKRALFAELDALAPPHAILA-SSTSA-LLASAFTEHLAGRE-R-CLVAHPINPPYL------IPVVE 152 (308)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHHhCCCcceEE-EeCCC-CCHHHHHHhcCCcc-c-EEEEecCCCccc------CceEE
Confidence 999999999876544433333323345555554 33332 34556777764422 2 344444344321 13366
Q ss_pred EcCCCCCC
Q 007040 299 ILPRSADY 306 (620)
Q Consensus 299 lTPHiAg~ 306 (620)
++||-++.
T Consensus 153 iv~~~~t~ 160 (308)
T PRK06129 153 VVPAPWTA 160 (308)
T ss_pred EeCCCCCC
Confidence 88875543
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.8e-07 Score=98.23 Aligned_cols=107 Identities=10% Similarity=0.088 Sum_probs=75.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCce--ecCCHHhh---------------hcCCcEEEEc
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR--RMDTLNDL---------------LAASDVISLH 225 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~--~~~sL~eL---------------L~~sDvVil~ 225 (620)
++|+|||+|.||..+|..|...|++|++||+++...+. ...+.. .-..++++ ++.||+|++|
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~-l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~ 82 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDT-INRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIA 82 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHH-HHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEE
Confidence 67999999999999999999999999999998754331 111110 01123333 3479999999
Q ss_pred ccCC------hhhHhhc--CHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 226 CAVT------DETIQII--NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 226 lPlT------~~T~~lI--~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
+|.. ++...+. -......+++|+++|+.+....-..+.+...|.+
T Consensus 83 vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~ 135 (415)
T PRK11064 83 VPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAE 135 (415)
T ss_pred cCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 9964 2222332 2456778999999999999777667777666654
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.3e-07 Score=81.95 Aligned_cols=90 Identities=17% Similarity=0.224 Sum_probs=63.8
Q ss_pred EEEEEeCChhhHHHHHHHhhCC---CEEE-EECCCCCCCCcc-ccCCceecC-CHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 164 VLGIVGRSASARALATRSLSFK---MSVL-YFDVPEGKGKVT-FPSAARRMD-TLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG---~~V~-~~dr~~~~~~~~-~~~g~~~~~-sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
+|||||+|+||.++++.|...| .+|+ ++++++...... ...+..... +..+++..+|+|++++|.. ....++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~-~~~~v~- 78 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQ-QLPEVL- 78 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GG-GHHHHH-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHH-HHHHHH-
Confidence 6999999999999999999999 8999 548887544322 122333333 7889999999999999944 222333
Q ss_pred HHHhhccCCCcEEEEcCCC
Q 007040 238 AECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG 256 (620)
... ....++.++|++.-|
T Consensus 79 ~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 79 SEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp HHH-HHHHTTSEEEEESTT
T ss_pred HHH-hhccCCCEEEEeCCC
Confidence 333 667789999998643
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=8.1e-07 Score=103.73 Aligned_cols=141 Identities=14% Similarity=0.119 Sum_probs=92.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC--CEEEEECCCCCCCCccccCCce--ecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 163 LVLGIVGRSASARALATRSLSFK--MSVLYFDVPEGKGKVTFPSAAR--RMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG--~~V~~~dr~~~~~~~~~~~g~~--~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
++|||||+|.||.++|+.++..| .+|++||++..........+.. ...++.+++..+|+|++++|.. .+..++.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl~- 81 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVLA- 81 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHHH-
Confidence 67999999999999999999888 5899999987543322223332 3356888899999999999964 4444443
Q ss_pred HHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc---eeEeecCCC--CCCCCccccCCCcEEEcCCCCC
Q 007040 239 ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA---GCALDGAEG--PQWMEAWVREMPNVLILPRSAD 305 (620)
Q Consensus 239 ~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~---GAaLDV~E~--P~~~~spL~~~pNVIlTPHiAg 305 (620)
.....++++.++++++..+..-.+++.+.+....+. ++.+-.-+. ....+..|+.-.+++++|+...
T Consensus 82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~ 153 (735)
T PRK14806 82 DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAET 153 (735)
T ss_pred HHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCC
Confidence 344567899999999986543344555554332111 111110010 1123446778888899986543
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.3e-07 Score=94.45 Aligned_cols=102 Identities=13% Similarity=0.139 Sum_probs=77.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC----EEEEECCCCCCCCcccc-CCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 163 LVLGIVGRSASARALATRSLSFKM----SVLYFDVPEGKGKVTFP-SAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~----~V~~~dr~~~~~~~~~~-~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++|||||+|+||.+||+.|...|+ +|+++|++......... .++....+..+++.+||+|++++|. .....++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP-~~~~~vl- 80 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKP-DLYSSVI- 80 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeCh-HHHHHHH-
Confidence 479999999999999999987774 79999998755432221 3555566788899999999999994 5666666
Q ss_pred HHHhhccCCCcEEEEcCCChhhcHHHHHHHH
Q 007040 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLL 268 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL 268 (620)
.+....++++.++|.+.-| ++.+.|.+.|
T Consensus 81 ~~l~~~~~~~~lvISi~AG--i~i~~l~~~l 109 (272)
T PRK12491 81 NQIKDQIKNDVIVVTIAAG--KSIKSTENEF 109 (272)
T ss_pred HHHHHhhcCCcEEEEeCCC--CcHHHHHHhc
Confidence 3444557889999999887 4555666555
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.1e-07 Score=94.68 Aligned_cols=78 Identities=22% Similarity=0.355 Sum_probs=67.7
Q ss_pred eecCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG-~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|++|+|||.| .||++||.+|...|++|++|++.. .++.++.++||+|+++++.. +++.
T Consensus 156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t--------------~~l~e~~~~ADIVIsavg~~----~~v~ 217 (301)
T PRK14194 156 DLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS--------------TDAKALCRQADIVVAAVGRP----RLID 217 (301)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhcCCEEEEecCCh----hccc
Confidence 5899999999996 999999999999999999998654 26889999999999999965 4565
Q ss_pred HHHhhccCCCcEEEEcCCCh
Q 007040 238 AECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~ 257 (620)
... +|+|+++||+|--.
T Consensus 218 ~~~---ik~GaiVIDvgin~ 234 (301)
T PRK14194 218 ADW---LKPGAVVIDVGINR 234 (301)
T ss_pred Hhh---ccCCcEEEEecccc
Confidence 544 89999999998654
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.9e-07 Score=84.58 Aligned_cols=114 Identities=19% Similarity=0.186 Sum_probs=81.1
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCC-CEEEEECCCCCCCCccccC-Cc----eecCCHHhhhcCCcEEEEcccCChh-h
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFK-MSVLYFDVPEGKGKVTFPS-AA----RRMDTLNDLLAASDVISLHCAVTDE-T 232 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG-~~V~~~dr~~~~~~~~~~~-g~----~~~~sL~eLL~~sDvVil~lPlT~~-T 232 (620)
+.+++++|||.|.||..+++.|...| .+|.++|++.......... +. ....++.+++.++|+|++++|.... .
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~~ 96 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKPG 96 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCCC
Confidence 56789999999999999999999886 7899999986443311111 11 1345777888999999999998753 1
Q ss_pred Hh-hcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 233 IQ-IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 233 ~~-lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
.. .+.. ..++++.+++|++..+... .|.+.+++..+. .++.
T Consensus 97 ~~~~~~~---~~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~~--~v~g 138 (155)
T cd01065 97 DELPLPP---SLLKPGGVVYDVVYNPLET--PLLKEARALGAK--TIDG 138 (155)
T ss_pred CCCCCCH---HHcCCCCEEEEcCcCCCCC--HHHHHHHHCCCc--eeCC
Confidence 22 2332 2368999999998765433 777777776543 4444
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.6e-06 Score=97.23 Aligned_cols=119 Identities=15% Similarity=0.135 Sum_probs=82.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-------------------ccCC-ceecCCHHhhhcCCcEE
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT-------------------FPSA-ARRMDTLNDLLAASDVI 222 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~-------------------~~~g-~~~~~sL~eLL~~sDvV 222 (620)
++|||||.|.||.++|..+...|++|++||+++...... ...+ +...+++.+++++||+|
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V 84 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI 84 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence 479999999999999999999999999999986442210 0012 34567898999999999
Q ss_pred EEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCC
Q 007040 223 SLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQ 285 (620)
Q Consensus 223 il~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~ 285 (620)
+.++|...+.+..+-.+.-..++++++|+....| + ....|.+.+.... ...++-+-+|+
T Consensus 85 ieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsg-i-~~s~l~~~~~~~~--r~~~~hP~nP~ 143 (495)
T PRK07531 85 QESVPERLDLKRRVLAEIDAAARPDALIGSSTSG-F-LPSDLQEGMTHPE--RLFVAHPYNPV 143 (495)
T ss_pred EEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCC-C-CHHHHHhhcCCcc--eEEEEecCCCc
Confidence 9999998877775444555567888765544444 3 3446666664322 23455443343
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=98.38 E-value=9.9e-07 Score=87.83 Aligned_cols=108 Identities=17% Similarity=0.192 Sum_probs=81.7
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccC-CceecCCHHhhhc-CCcEEEEcccCChhhHhhc
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPS-AARRMDTLNDLLA-ASDVISLHCAVTDETIQII 236 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~-g~~~~~sL~eLL~-~sDvVil~lPlT~~T~~lI 236 (620)
++.|++++|+|+|+||+.+|+.|..+|++|+++|++.......... +.... +.++++. +||+++.|.. .++|
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v-~~~~l~~~~~Dv~vp~A~-----~~~I 98 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVV-APEEIYSVDADVFAPCAL-----GGVI 98 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-cchhhccccCCEEEeccc-----cccc
Confidence 5899999999999999999999999999999999886433211111 33333 3456665 7999986665 3589
Q ss_pred CHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 237 ~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
+.+.+..|+ ..+++.-+-+.+-| ..-.+.|++..|.
T Consensus 99 ~~~~~~~l~-~~~v~~~AN~~~~~-~~~~~~L~~~Gi~ 134 (200)
T cd01075 99 NDDTIPQLK-AKAIAGAANNQLAD-PRHGQMLHERGIL 134 (200)
T ss_pred CHHHHHHcC-CCEEEECCcCccCC-HhHHHHHHHCCCE
Confidence 999999997 56888888888876 4556677777765
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.8e-07 Score=94.59 Aligned_cols=103 Identities=15% Similarity=0.076 Sum_probs=76.0
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc--------CC------ceecCCHHhhhcCCcEEEEccc
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP--------SA------ARRMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~--------~g------~~~~~sL~eLL~~sDvVil~lP 227 (620)
.++|+|||+|.||..+|..|...|++|.+|+++....+.... .+ +....++.+++..+|+|++++|
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~ 83 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP 83 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence 457999999999999999999999999999997543210000 01 3345688888999999999999
Q ss_pred CChhhHhhcCHHHhhccCCCcEEEEcCCC-hhhc--HHHHHHHHHc
Q 007040 228 VTDETIQIINAECLQHIKPGAFLVNTGSS-QLLD--DCAVKQLLID 270 (620)
Q Consensus 228 lT~~T~~lI~~~~L~~MK~gAiLINvgRG-~vVD--e~AL~~AL~~ 270 (620)
... + .+.++.++++.++|+++.| ..-+ ...+.+.+.+
T Consensus 84 ~~~-~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~ 123 (328)
T PRK14618 84 SKA-L-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF 123 (328)
T ss_pred hHH-H-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence 762 2 4556788999999999997 3222 3455555544
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.6e-06 Score=87.81 Aligned_cols=116 Identities=16% Similarity=0.138 Sum_probs=80.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc----------c----cCC-------------ceecCCHHhh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT----------F----PSA-------------ARRMDTLNDL 215 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~----------~----~~g-------------~~~~~sL~eL 215 (620)
++|+|||.|.||..+|..+...|++|++||++....+.. . ..+ .....++ +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 579999999999999999999999999999986432210 0 001 1123345 56
Q ss_pred hcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCC
Q 007040 216 LAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE 282 (620)
Q Consensus 216 L~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E 282 (620)
+++||+|+.++|...+.+.-+-++.-..++++++|+++..| +....+.+.+.. .-...++-.+.
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~-~~r~ig~hf~~ 146 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALER-KDRFIGMHWFN 146 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCC-cccEEEEecCC
Confidence 78999999999988765555444555668999999987777 355666666643 22233444444
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.9e-06 Score=88.30 Aligned_cols=93 Identities=11% Similarity=0.060 Sum_probs=74.7
Q ss_pred hHHHHHHHhhCCCEEEEECCCCCCCC-----ccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCc
Q 007040 174 ARALATRSLSFKMSVLYFDVPEGKGK-----VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGA 248 (620)
Q Consensus 174 G~~vA~~LkafG~~V~~~dr~~~~~~-----~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gA 248 (620)
|.+||++|...|+.|++||++..... .....|+...++..++++++|+|++|+|..+.+..++ ...+..+++|+
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~Ga 110 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENA 110 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCC
Confidence 89999999999999999998764321 1233466777889999999999999999988888888 56889999999
Q ss_pred EEEEcCCChhhcHHHHHHHHHc
Q 007040 249 FLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 249 iLINvgRG~vVDe~AL~~AL~~ 270 (620)
++||++.. +...++..|..
T Consensus 111 IVID~STI---sP~t~~~~~e~ 129 (341)
T TIGR01724 111 VICNTCTV---SPVVLYYSLEK 129 (341)
T ss_pred EEEECCCC---CHHHHHHHHHH
Confidence 99999875 44555555544
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.3e-07 Score=93.24 Aligned_cols=93 Identities=15% Similarity=0.158 Sum_probs=70.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc--------------CCceecCCHHhhhcCCcEEEEcccC
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP--------------SAARRMDTLNDLLAASDVISLHCAV 228 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~--------------~g~~~~~sL~eLL~~sDvVil~lPl 228 (620)
++|+|||+|.||..+|..|...|++|.+|++++...+.... .+.....++++++..+|+|++++|.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 46999999999999999999999999999997532221110 1234456788889999999999996
Q ss_pred ChhhHhhcCHHHhhccCCCcEEEEcCCCh
Q 007040 229 TDETIQIINAECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 229 T~~T~~lI~~~~L~~MK~gAiLINvgRG~ 257 (620)
..+..++. .....+++++++|++..|-
T Consensus 82 -~~~~~v~~-~l~~~~~~~~~vi~~~ngv 108 (325)
T PRK00094 82 -QALREVLK-QLKPLLPPDAPIVWATKGI 108 (325)
T ss_pred -HHHHHHHH-HHHhhcCCCCEEEEEeecc
Confidence 45666663 4556678999999997553
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.2e-06 Score=91.78 Aligned_cols=79 Identities=20% Similarity=0.298 Sum_probs=69.0
Q ss_pred eecCcEEEEEeCChh-hHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSAS-ARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~I-G~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||.|.+ |+.+|.+|...|++|++++... .+|.+.+++||+|+.++| +.++|+
T Consensus 155 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t--------------~~l~~~~~~ADIVV~avG----~~~~i~ 216 (285)
T PRK14189 155 PLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT--------------RDLAAHTRQADIVVAAVG----KRNVLT 216 (285)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC--------------CCHHHHhhhCCEEEEcCC----CcCccC
Confidence 589999999999999 9999999999999999976431 368899999999999999 456888
Q ss_pred HHHhhccCCCcEEEEcCCChh
Q 007040 238 AECLQHIKPGAFLVNTGSSQL 258 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~v 258 (620)
. .++|+|+++||+|.-.+
T Consensus 217 ~---~~ik~gavVIDVGin~~ 234 (285)
T PRK14189 217 A---DMVKPGATVIDVGMNRD 234 (285)
T ss_pred H---HHcCCCCEEEEcccccc
Confidence 7 67899999999997553
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.33 E-value=5e-06 Score=86.24 Aligned_cols=161 Identities=16% Similarity=0.119 Sum_probs=99.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc-----------cccC-------------CceecCCHHhhhcC
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV-----------TFPS-------------AARRMDTLNDLLAA 218 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~-----------~~~~-------------g~~~~~sL~eLL~~ 218 (620)
++|+|||.|.||..+|..+...|++|++||+++..... .... ......+++ .+.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 46999999999999999999999999999987644310 0011 122244565 4789
Q ss_pred CcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEE
Q 007040 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVL 298 (620)
Q Consensus 219 sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVI 298 (620)
||+|++++|...+.+.-+-.+....++++++|+....| +....|.+.+... -...++--+. |++ -.+-|-
T Consensus 83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~~-~r~ig~h~~~-P~~------~~~~ve 152 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKRP-DKVIGMHFFN-PVP------VMKLVE 152 (282)
T ss_pred CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCCC-cceEEeeccC-Ccc------cCccEE
Confidence 99999999988777755555566779999999554444 4555777777432 2223332222 222 234555
Q ss_pred EcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCcc
Q 007040 299 ILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTEGCE 343 (620)
Q Consensus 299 lTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~p~nvVn~~~~y~ 343 (620)
+.|+ .+.+.+..+.+.. -+.. -|+.|..+ +...|+.
T Consensus 153 v~~g-~~t~~e~~~~~~~----l~~~---lGk~pv~~-~d~~g~i 188 (282)
T PRK05808 153 IIRG-LATSDATHEAVEA----LAKK---IGKTPVEV-KNAPGFV 188 (282)
T ss_pred EeCC-CCCCHHHHHHHHH----HHHH---cCCeeEEe-cCccChH
Confidence 7776 3334444443322 2222 36666654 5555554
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.5e-06 Score=94.93 Aligned_cols=116 Identities=20% Similarity=0.231 Sum_probs=85.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-----------ccCC-------------ceecCCHHhhhcC
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT-----------FPSA-------------ARRMDTLNDLLAA 218 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~-----------~~~g-------------~~~~~sL~eLL~~ 218 (620)
++|||||+|.||..||..+...|+.|+.||++....... ...| +....++++ +.+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence 579999999999999999999999999999987543321 1122 244567766 569
Q ss_pred CcEEEEcccCChhhHhhcCHHHhhccCCCcEE-EEcCCChhhcHHHHHHHHHcCCcceeEeecCCC
Q 007040 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFL-VNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG 283 (620)
Q Consensus 219 sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiL-INvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~ 283 (620)
||+|+-++|...+.+..+-.+.-..++++++| +|+|.-.+- +|..++.. .-..+++..|.+
T Consensus 87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~---~la~~~~~-p~r~~G~hff~P 148 (507)
T PRK08268 87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT---AIAAALKH-PERVAGLHFFNP 148 (507)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---HHHhhcCC-cccEEEEeecCC
Confidence 99999999999998887766655667899999 599887663 56665542 222346666654
|
|
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.4e-07 Score=87.13 Aligned_cols=91 Identities=16% Similarity=0.168 Sum_probs=64.3
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC-CCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG-KGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~-~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
|.+++|+|||||..|.+.|..|+.-|++|++-.+... ....+...|.. +.++.|+.+.||+|++.+|.. ....++..
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~-v~~~~eAv~~aDvV~~L~PD~-~q~~vy~~ 79 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFE-VMSVAEAVKKADVVMLLLPDE-VQPEVYEE 79 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-E-CCEHHHHHHC-SEEEE-S-HH-HHHHHHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCe-eccHHHHHhhCCEEEEeCChH-HHHHHHHH
Confidence 5799999999999999999999999999998888765 22333334444 458999999999999999944 22345567
Q ss_pred HHhhccCCCcEEEE
Q 007040 239 ECLQHIKPGAFLVN 252 (620)
Q Consensus 239 ~~L~~MK~gAiLIN 252 (620)
+....||+|+.|+=
T Consensus 80 ~I~p~l~~G~~L~f 93 (165)
T PF07991_consen 80 EIAPNLKPGATLVF 93 (165)
T ss_dssp HHHHHS-TT-EEEE
T ss_pred HHHhhCCCCCEEEe
Confidence 77889999998764
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.2e-06 Score=91.05 Aligned_cols=108 Identities=13% Similarity=0.061 Sum_probs=78.7
Q ss_pred CcEEEEEeCChhhHHHHHHHhh--CCCEEE-EECCCCCCCCccc-cCC-ceecCCHHhhhcCCcEEEEcccCChhhHhhc
Q 007040 162 GLVLGIVGRSASARALATRSLS--FKMSVL-YFDVPEGKGKVTF-PSA-ARRMDTLNDLLAASDVISLHCAVTDETIQII 236 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lka--fG~~V~-~~dr~~~~~~~~~-~~g-~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI 236 (620)
..+|||||+|.||+.+|+.+.. .+++|. ++|+.+....... ..+ ...+.++++++.++|+|++|+|... ..-+
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~--h~e~ 83 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASV--LRAI 83 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHH--HHHH
Confidence 4689999999999999999985 588876 6788764322111 112 2345789999999999999999652 2222
Q ss_pred CHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 237 ~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
. ...++.|.-++..+.|.+.+.++|.++.+++...
T Consensus 84 ~---~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~ 118 (271)
T PRK13302 84 V---EPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ 118 (271)
T ss_pred H---HHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence 2 3335667777778899888889999998876543
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.27 E-value=7e-06 Score=86.14 Aligned_cols=104 Identities=18% Similarity=0.152 Sum_probs=71.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc-----CC--------------ceecCCHHhhhcCCcEEE
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP-----SA--------------ARRMDTLNDLLAASDVIS 223 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~-----~g--------------~~~~~sL~eLL~~sDvVi 223 (620)
++|+|||.|.||..+|..|...|++|++||++......... .+ .....++.+++.+||+|+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 57999999999999999999999999999987643221110 00 123457888899999999
Q ss_pred EcccCChhhH-hhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHH
Q 007040 224 LHCAVTDETI-QIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269 (620)
Q Consensus 224 l~lPlT~~T~-~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~ 269 (620)
+++|...+.. .++ .+.-..++++++++....| +....|.+.+.
T Consensus 85 ~av~~~~~~~~~v~-~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~ 128 (311)
T PRK06130 85 EAVPEKLELKRDVF-ARLDGLCDPDTIFATNTSG--LPITAIAQAVT 128 (311)
T ss_pred EeccCcHHHHHHHH-HHHHHhCCCCcEEEECCCC--CCHHHHHhhcC
Confidence 9999876543 344 3333446777777544434 23456666664
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.7e-06 Score=89.68 Aligned_cols=104 Identities=10% Similarity=0.133 Sum_probs=74.9
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCC----CEEEEECCCCCCC-Ccc-ccCCceecCCHHhhhcCCcEEEEcccCChhhHhh
Q 007040 162 GLVLGIVGRSASARALATRSLSFK----MSVLYFDVPEGKG-KVT-FPSAARRMDTLNDLLAASDVISLHCAVTDETIQI 235 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG----~~V~~~dr~~~~~-~~~-~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~l 235 (620)
+++|||||+|+||.+||+.|...| .+|++++|+.... ... ...++....+..+++.+||+|++++|.. ....+
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~-~~~~v 81 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPK-DVAEA 81 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHH-HHHHH
Confidence 568999999999999999999887 7899999875321 111 1224555667888999999999999944 34444
Q ss_pred cCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHH
Q 007040 236 INAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269 (620)
Q Consensus 236 I~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~ 269 (620)
+ ......++++.++|++.-| +..+.+.+.+.
T Consensus 82 l-~~l~~~~~~~~liIs~~aG--i~~~~l~~~~~ 112 (279)
T PRK07679 82 L-IPFKEYIHNNQLIISLLAG--VSTHSIRNLLQ 112 (279)
T ss_pred H-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 4 3444567889999998655 34555555543
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.1e-06 Score=82.45 Aligned_cols=89 Identities=22% Similarity=0.387 Sum_probs=75.0
Q ss_pred eecCcEEEEEeCChh-hHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSAS-ARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~I-G~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
.+.|+++.|||.|.| |..+|+.|...|.+|++.+++. .++.+.+.++|+||.+.+.. ++|.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~--------------~~l~~~l~~aDiVIsat~~~----~ii~ 102 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT--------------KNLKEHTKQADIVIVAVGKP----GLVK 102 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc--------------hhHHHHHhhCCEEEEcCCCC----ceec
Confidence 479999999999996 8889999999999999999863 36888999999999999865 3788
Q ss_pred HHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcce
Q 007040 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAG 275 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~G 275 (620)
.+. ++++.++||+|....+| ..+|++.|
T Consensus 103 ~~~---~~~~~viIDla~prdvd-------~~~~~~~G 130 (168)
T cd01080 103 GDM---VKPGAVVIDVGINRVPD-------KSGGKLVG 130 (168)
T ss_pred HHH---ccCCeEEEEccCCCccc-------ccCCCeeC
Confidence 774 67899999999988777 45566654
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.7e-06 Score=93.86 Aligned_cols=118 Identities=15% Similarity=0.107 Sum_probs=85.4
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc-----------cccCC-------------ceecCCHHhhhc
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV-----------TFPSA-------------ARRMDTLNDLLA 217 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~-----------~~~~g-------------~~~~~sL~eLL~ 217 (620)
=++|||||.|.||..||..+...|++|+.||+++..... ....| +....++++ ++
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~ 83 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LA 83 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hC
Confidence 356999999999999999999999999999998654321 01111 234567765 46
Q ss_pred CCcEEEEcccCChhhHhhcCHHHhhccCCCcEEE-EcCCChhhcHHHHHHHHHcCCcceeEeecCCCC
Q 007040 218 ASDVISLHCAVTDETIQIINAECLQHIKPGAFLV-NTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGP 284 (620)
Q Consensus 218 ~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLI-NvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P 284 (620)
+||+||.++|...+.+..+-.+.-..++++++|. |++.-.+ ..+.+++.. .....++..|.++
T Consensus 84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~-p~r~~G~HFf~Pa 147 (503)
T TIGR02279 84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLAR-PERVAGLHFFNPA 147 (503)
T ss_pred CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCc-ccceEEEeccCcc
Confidence 9999999999998888876566666788888877 7776554 356666643 3445677766643
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.6e-06 Score=88.78 Aligned_cols=78 Identities=18% Similarity=0.340 Sum_probs=66.3
Q ss_pred eecCcEEEEEe-CChhhHHHHHHHhhCCCEEEEEC-CCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhc
Q 007040 159 RCRGLVLGIVG-RSASARALATRSLSFKMSVLYFD-VPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII 236 (620)
Q Consensus 159 ~L~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~d-r~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI 236 (620)
++.|++|+||| .|.||++||.+|...|++|++|+ ++. ++.+++++||+|+++++..+ ++
T Consensus 155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~---------------~l~e~~~~ADIVIsavg~~~----~v 215 (296)
T PRK14188 155 DLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR---------------DLPAVCRRADILVAAVGRPE----MV 215 (296)
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC---------------CHHHHHhcCCEEEEecCChh----hc
Confidence 47999999999 99999999999999999999996 432 47899999999999999753 55
Q ss_pred CHHHhhccCCCcEEEEcCCChh
Q 007040 237 NAECLQHIKPGAFLVNTGSSQL 258 (620)
Q Consensus 237 ~~~~L~~MK~gAiLINvgRG~v 258 (620)
.+.. +|+|+++||+|--.+
T Consensus 216 ~~~~---lk~GavVIDvGin~~ 234 (296)
T PRK14188 216 KGDW---IKPGATVIDVGINRI 234 (296)
T ss_pred chhe---ecCCCEEEEcCCccc
Confidence 5433 899999999986543
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.8e-06 Score=93.56 Aligned_cols=105 Identities=16% Similarity=0.185 Sum_probs=89.3
Q ss_pred hhHHHHHHHhhCCCEEEEECCCCCCCCcccc-----CCceecCCHHhhhcC---CcEEEEcccCChhhHhhcCHHHhhcc
Q 007040 173 SARALATRSLSFKMSVLYFDVPEGKGKVTFP-----SAARRMDTLNDLLAA---SDVISLHCAVTDETIQIINAECLQHI 244 (620)
Q Consensus 173 IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~-----~g~~~~~sL~eLL~~---sDvVil~lPlT~~T~~lI~~~~L~~M 244 (620)
||+.||++|...|++|.+|||++...+.... .++....++.++++. +|+|++++|..+.+..+| ...+..|
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l 79 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLL 79 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcC
Confidence 7999999999999999999999765443222 135667899998874 899999999999999998 4688999
Q ss_pred CCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 245 KPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 245 K~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
.+|.++||.|....-|...+.+.+++..+. .+|.
T Consensus 80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~--fvda 113 (459)
T PRK09287 80 EKGDIIIDGGNSNYKDTIRREKELAEKGIH--FIGM 113 (459)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHhcCCe--EEec
Confidence 999999999999999999999999988776 5665
|
|
| >KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.7e-06 Score=89.02 Aligned_cols=94 Identities=17% Similarity=0.193 Sum_probs=79.1
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHH
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAE 239 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~ 239 (620)
+.||.+.|.|||..|+.-|..|++||.+|++....+-..-.+..+|. .+.+++|+.++.||++.+.- .+.+|..+
T Consensus 212 ~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~-~V~tm~ea~~e~difVTtTG----c~dii~~~ 286 (434)
T KOG1370|consen 212 IAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGY-EVTTLEEAIREVDIFVTTTG----CKDIITGE 286 (434)
T ss_pred ecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhcc-EeeeHHHhhhcCCEEEEccC----CcchhhHH
Confidence 68999999999999999999999999999999877644433333444 44689999999999997664 56899999
Q ss_pred HhhccCCCcEEEEcCCChh
Q 007040 240 CLQHIKPGAFLVNTGSSQL 258 (620)
Q Consensus 240 ~L~~MK~gAiLINvgRG~v 258 (620)
+|.+||.++|+.|+|.-.+
T Consensus 287 H~~~mk~d~IvCN~Ghfd~ 305 (434)
T KOG1370|consen 287 HFDQMKNDAIVCNIGHFDT 305 (434)
T ss_pred HHHhCcCCcEEeccccccc
Confidence 9999999999999987554
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.8e-06 Score=87.04 Aligned_cols=102 Identities=17% Similarity=0.219 Sum_probs=73.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC---EEEEECCCCCCCCcccc-C-CceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 163 LVLGIVGRSASARALATRSLSFKM---SVLYFDVPEGKGKVTFP-S-AARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~---~V~~~dr~~~~~~~~~~-~-g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++|||||+|+||+++++.|...|. .|.+|+++......... . +.....+..+++.++|+|++++| ......++.
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~ 79 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLR 79 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHH
Confidence 369999999999999999998775 35788987644321111 1 34455688889999999999999 344555553
Q ss_pred HHHhhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
. + .++++.++|.+.-| +..+.|.+.+..
T Consensus 80 ~--l-~~~~~~~vis~~ag--~~~~~l~~~~~~ 107 (258)
T PRK06476 80 A--L-RFRPGQTVISVIAA--TDRAALLEWIGH 107 (258)
T ss_pred H--h-ccCCCCEEEEECCC--CCHHHHHHHhCC
Confidence 2 3 35789999998743 677777777654
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.6e-06 Score=86.32 Aligned_cols=78 Identities=17% Similarity=0.307 Sum_probs=66.3
Q ss_pred eecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|++++|||. |.+|++||.+|...|++|++|.... .++.+.+++||+|+.+++.. +++.
T Consensus 155 ~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVI~avg~~----~~v~ 216 (284)
T PRK14179 155 ELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRT--------------RNLAEVARKADILVVAIGRG----HFVT 216 (284)
T ss_pred CCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhhCCEEEEecCcc----ccCC
Confidence 589999999999 9999999999999999999993221 26889999999999999965 4566
Q ss_pred HHHhhccCCCcEEEEcCCCh
Q 007040 238 AECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~ 257 (620)
... +|+|+++||+|--.
T Consensus 217 ~~~---ik~GavVIDvgin~ 233 (284)
T PRK14179 217 KEF---VKEGAVVIDVGMNR 233 (284)
T ss_pred HHH---ccCCcEEEEeccee
Confidence 543 89999999998654
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.4e-06 Score=87.14 Aligned_cols=103 Identities=14% Similarity=0.173 Sum_probs=74.3
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC----EEEEECCCCCCCCcccc--CCceecCCHHhhhcCCcEEEEcccCChhhHhhc
Q 007040 163 LVLGIVGRSASARALATRSLSFKM----SVLYFDVPEGKGKVTFP--SAARRMDTLNDLLAASDVISLHCAVTDETIQII 236 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~----~V~~~dr~~~~~~~~~~--~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI 236 (620)
++|||||+|.||..+|+.|...|. .|.+|+|+......... .++....+..+++..+|+|++++|. .....++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p-~~~~~vl 79 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKP-LDIYPLL 79 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCH-HHHHHHH
Confidence 369999999999999999998883 79999998643321111 1344456788889999999999983 3355555
Q ss_pred CHHHhhccCCCcEEEEcCCChhhcHHHHHHHHH
Q 007040 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269 (620)
Q Consensus 237 ~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~ 269 (620)
.+....++++.++|+++-| +..+.|.+.+.
T Consensus 80 -~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~ 109 (273)
T PRK07680 80 -QKLAPHLTDEHCLVSITSP--ISVEQLETLVP 109 (273)
T ss_pred -HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 3344567889999999855 36666666553
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=9.2e-06 Score=88.73 Aligned_cols=106 Identities=11% Similarity=0.068 Sum_probs=74.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc----------------CCcee--cCCHHhhhcCCcEEEE
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP----------------SAARR--MDTLNDLLAASDVISL 224 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~----------------~g~~~--~~sL~eLL~~sDvVil 224 (620)
++|+|||+|.||..+|..+. .|++|++||++......... .+... ..+..+++..||+|++
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 36999999999999997665 59999999998643321100 11112 2336677899999999
Q ss_pred cccCCh----------hhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcC
Q 007040 225 HCAVTD----------ETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDG 271 (620)
Q Consensus 225 ~lPlT~----------~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G 271 (620)
++|..- ..+..+ .... .+++|.++|+.|.-.+=-.+.+.+.+.+.
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~-~~i~-~~~~g~lVV~~STv~pgtt~~l~~~~~~~ 134 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVI-KDVV-EINPYAVMVIKSTVPVGFTAAMHKKYRTE 134 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHH-HHHH-hcCCCCEEEEeeecCCchHHHHHHHhhcC
Confidence 999651 112222 2333 37999999999998887777888777653
|
|
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=2e-06 Score=86.13 Aligned_cols=136 Identities=13% Similarity=0.138 Sum_probs=95.3
Q ss_pred CCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHH--hhCCCEEE
Q 007040 112 TSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRS--LSFKMSVL 189 (620)
Q Consensus 112 g~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~L--kafG~~V~ 189 (620)
+..+...++|.++.++...|++. .|. ...+++|||+|.+|+.+++.+ ...|+++.
T Consensus 57 ~~~G~~~~gy~v~~l~~~~~~~l----------~~~-------------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~iv 113 (213)
T PRK05472 57 GEFGKRGVGYNVEELLEFIEKIL----------GLD-------------RTWNVALVGAGNLGRALLNYNGFEKRGFKIV 113 (213)
T ss_pred HhcCCCCCCeeHHHHHHHHHHHh----------CCC-------------CCcEEEEECCCHHHHHHHHhhhcccCCcEEE
Confidence 34445666788888888887653 121 235699999999999999863 36789877
Q ss_pred E-ECCCCCCCCcccc-CCceecCCHHhhhcC--CcEEEEcccCChh---hHhhcCHHHhhccCCCcEEEEcCCChhhcHH
Q 007040 190 Y-FDVPEGKGKVTFP-SAARRMDTLNDLLAA--SDVISLHCAVTDE---TIQIINAECLQHIKPGAFLVNTGSSQLLDDC 262 (620)
Q Consensus 190 ~-~dr~~~~~~~~~~-~g~~~~~sL~eLL~~--sDvVil~lPlT~~---T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~ 262 (620)
+ +|+++........ ..+...+++.+++++ .|+|++++|.+.. ...++......-|....+.+|+.+|.+|+..
T Consensus 114 gv~D~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~ 193 (213)
T PRK05472 114 AAFDVDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRNV 193 (213)
T ss_pred EEEECChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEEe
Confidence 5 5765433221111 112234568888765 9999999998765 3334444455667778999999999999999
Q ss_pred HHHHHHHc
Q 007040 263 AVKQLLID 270 (620)
Q Consensus 263 AL~~AL~~ 270 (620)
+|..+|..
T Consensus 194 ~l~~~l~~ 201 (213)
T PRK05472 194 DLTVELQT 201 (213)
T ss_pred chHHHHHH
Confidence 99998864
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.1e-06 Score=81.99 Aligned_cols=94 Identities=16% Similarity=0.258 Sum_probs=69.3
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCE-EEEECCCCCCCCcc---ccC---CceecCCHHhhhcCCcEEEEcccCChh
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMS-VLYFDVPEGKGKVT---FPS---AARRMDTLNDLLAASDVISLHCAVTDE 231 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~-V~~~dr~~~~~~~~---~~~---g~~~~~sL~eLL~~sDvVil~lPlT~~ 231 (620)
.+.|+++.|||.|.+|+.++..|...|++ |++++|+....... +.. .....+++.+.+.++|+|+.+.|....
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP 88 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence 58999999999999999999999999996 99999986543311 111 123456777889999999999997643
Q ss_pred hHhhcCHHHhhccCCCc-EEEEcCC
Q 007040 232 TIQIINAECLQHIKPGA-FLVNTGS 255 (620)
Q Consensus 232 T~~lI~~~~L~~MK~gA-iLINvgR 255 (620)
+|..+.+....+.. ++++.+.
T Consensus 89 ---~i~~~~~~~~~~~~~~v~Dla~ 110 (135)
T PF01488_consen 89 ---IITEEMLKKASKKLRLVIDLAV 110 (135)
T ss_dssp ---SSTHHHHTTTCHHCSEEEES-S
T ss_pred ---ccCHHHHHHHHhhhhceecccc
Confidence 77777777665433 6666654
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=98.04 E-value=5.8e-06 Score=77.15 Aligned_cols=93 Identities=19% Similarity=0.234 Sum_probs=56.0
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEE-CCCCCCCCcc-ccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYF-DVPEGKGKVT-FPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~-dr~~~~~~~~-~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
-...+|||||.|+.|..+++.|...|+.|.++ +++....... ...+.....++++++..+|+|++++|.. . ..-+-
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDd-a-I~~va 85 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDD-A-IAEVA 85 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CC-H-HHHHH
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechH-H-HHHHH
Confidence 35678999999999999999999999999876 5654322211 1122334457889999999999999977 2 22233
Q ss_pred HHHhhc--cCCCcEEEEcC
Q 007040 238 AECLQH--IKPGAFLVNTG 254 (620)
Q Consensus 238 ~~~L~~--MK~gAiLINvg 254 (620)
+++-.. .++|.+++-|+
T Consensus 86 ~~La~~~~~~~g~iVvHtS 104 (127)
T PF10727_consen 86 EQLAQYGAWRPGQIVVHTS 104 (127)
T ss_dssp HHHHCC--S-TT-EEEES-
T ss_pred HHHHHhccCCCCcEEEECC
Confidence 333333 68999999985
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.04 E-value=4e-05 Score=86.40 Aligned_cols=180 Identities=12% Similarity=0.127 Sum_probs=106.4
Q ss_pred cceEEEEecCCCCCHHHHhcCCCCeE-EEEecccCCccchHHHHhcCcEEEEcCCCC--h--------HHHHHHHHHH-H
Q 007040 59 AAAAVLLHSLAYLPRAAQRRLRPYQL-ILCLGSSDRTVDSALAADLGLRLIHVDTSR--A--------EEIADTVMAL-L 126 (620)
Q Consensus 59 ~AdaVlv~s~~~l~~e~l~~lp~LK~-I~~~gaG~D~VD~~aa~erGI~VtNtpg~~--a--------~aVAE~aLaL-i 126 (620)
++|+|+--. ..+.+.++.++.=+. |....-..+.=-++.+.+++|.+..-...- + .++|+.+=-. +
T Consensus 64 ~adiIlkV~--~P~~~e~~~l~~g~tli~~l~p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iAGy~Av 141 (511)
T TIGR00561 64 QSDIILKVN--APSDAEIAELPAGKALVSFIWPAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIAGYRAI 141 (511)
T ss_pred cCCEEEEeC--CCCHHHHHhcCCCCEEEEEcCccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHHHHHHH
Confidence 567776432 345666777766444 444433333333566788899887733111 1 2233332110 1
Q ss_pred HHHHhccHHHHHHHHHhCCCC-CCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCC
Q 007040 127 LGLLRRTHLLARHALSASGWL-GSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSA 205 (620)
Q Consensus 127 Lal~Rrl~~~~~~~~~~g~W~-~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g 205 (620)
+..+..+ +.+. +..+.. + .+.+.++.|+|.|.+|...+..++.+|..|+++|++....+.....+
T Consensus 142 i~Aa~~l----------gr~~~g~~taa--g--~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lG 207 (511)
T TIGR00561 142 IEAAHEF----------GRFFTGQITAA--G--KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMG 207 (511)
T ss_pred HHHHHHh----------hhhcCCceecC--C--CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC
Confidence 1111111 1111 111221 1 35678999999999999999999999999999998864332111111
Q ss_pred cee-----------------cCC----------HHhhhcCCcEEEEcc--cCChhhHhhcCHHHhhccCCCcEEEEcCC
Q 007040 206 ARR-----------------MDT----------LNDLLAASDVISLHC--AVTDETIQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 206 ~~~-----------------~~s----------L~eLL~~sDvVil~l--PlT~~T~~lI~~~~L~~MK~gAiLINvgR 255 (620)
... .-+ +.+.++.+|+|+.++ |..+ .-.++.++.++.||||+++||++-
T Consensus 208 a~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 208 AEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred CeEEeccccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEeee
Confidence 111 001 456678899999887 3221 225789999999999999999975
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.6e-05 Score=83.57 Aligned_cols=78 Identities=19% Similarity=0.314 Sum_probs=67.9
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
.+.|+++.|||.|. +|+.+|..|...|++|++++++. .+|.+.+.+||+|+.+++.. ++|.
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVIsAvg~p----~~i~ 216 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS--------------KDMASYLKDADVIVSAVGKP----GLVT 216 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHHhhCCEEEECCCCC----cccC
Confidence 48999999999999 99999999999999999998642 36889999999999999853 5788
Q ss_pred HHHhhccCCCcEEEEcCCCh
Q 007040 238 AECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~ 257 (620)
.+ ++|+|+++||+|--.
T Consensus 217 ~~---~vk~gavVIDvGi~~ 233 (286)
T PRK14175 217 KD---VVKEGAVIIDVGNTP 233 (286)
T ss_pred HH---HcCCCcEEEEcCCCc
Confidence 75 468999999999754
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=97.98 E-value=9.9e-06 Score=77.33 Aligned_cols=92 Identities=14% Similarity=0.249 Sum_probs=65.7
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC--------------ccccCCceecCCHHhhhcCCcEEEEcccCC
Q 007040 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK--------------VTFPSAARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~--------------~~~~~g~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
+|+|||.|++|.++|..|...|.+|..|.+.....+ ...+.......+++++++.+|+|++++|..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~ 80 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ 80 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence 589999999999999999999999999999852111 112223445678999999999999999954
Q ss_pred hhhHhhcCHHHhhccCCCcEEEEcCCCh
Q 007040 230 DETIQIINAECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 230 ~~T~~lI~~~~L~~MK~gAiLINvgRG~ 257 (620)
. .+.++ ......++++..+|++.-|=
T Consensus 81 ~-~~~~~-~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 81 A-HREVL-EQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp G-HHHHH-HHHTTTSHTT-EEEETS-SE
T ss_pred H-HHHHH-HHHhhccCCCCEEEEecCCc
Confidence 2 33333 44566678999999998763
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.3e-05 Score=76.83 Aligned_cols=114 Identities=15% Similarity=0.063 Sum_probs=75.9
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc------------------------cccCCceecCCHHhhhcCC
Q 007040 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV------------------------TFPSAARRMDTLNDLLAAS 219 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~------------------------~~~~g~~~~~sL~eLL~~s 219 (620)
+|+|||.|.||..+|..+...|++|..||+++..... ..........+++++. .|
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 6999999999999999999999999999998643220 0011223567899888 99
Q ss_pred cEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecC
Q 007040 220 DVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGA 281 (620)
Q Consensus 220 DvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~ 281 (620)
|+|+=++|..-+.+.-+-++.-+.++++++|...+.+ +....|...+. ..-+..++=.|
T Consensus 80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~~~~-~p~R~ig~Hf~ 138 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAAALS-RPERFIGMHFF 138 (180)
T ss_dssp SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHTTSS-TGGGEEEEEE-
T ss_pred heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHhccC-cCceEEEEecc
Confidence 9999999999888887777777788899998776554 34445555553 23333444434
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.93 E-value=2e-05 Score=81.98 Aligned_cols=102 Identities=11% Similarity=0.251 Sum_probs=71.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC----CEEEEECCCCCCC-Ccccc-C-CceecCCHHhhhcCCcEEEEcccCChhhHhh
Q 007040 163 LVLGIVGRSASARALATRSLSFK----MSVLYFDVPEGKG-KVTFP-S-AARRMDTLNDLLAASDVISLHCAVTDETIQI 235 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG----~~V~~~dr~~~~~-~~~~~-~-g~~~~~sL~eLL~~sDvVil~lPlT~~T~~l 235 (620)
++|+|||+|+||.++|+.|...| .+|++|+++.... ..... . +.....+..+++..+|+|++++|.. ....+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp~-~~~~v 80 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPPL-AVLPL 80 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCHH-HHHHH
Confidence 46999999999999999999877 6899999865221 11011 1 2233457888899999999999932 34444
Q ss_pred cCHHHhhccCCCcEEEEcCCChhhcHHHHHHHH
Q 007040 236 INAECLQHIKPGAFLVNTGSSQLLDDCAVKQLL 268 (620)
Q Consensus 236 I~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL 268 (620)
+ .+....++++..+|.+.-| +..+.|.+.+
T Consensus 81 l-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~ 110 (277)
T PRK06928 81 L-KDCAPVLTPDRHVVSIAAG--VSLDDLLEIT 110 (277)
T ss_pred H-HHHHhhcCCCCEEEEECCC--CCHHHHHHHc
Confidence 4 2333456788899998877 5555776665
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.5e-05 Score=81.60 Aligned_cols=101 Identities=14% Similarity=0.151 Sum_probs=69.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC---CEEEEECCCCCCCCcccc-CCceecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 163 LVLGIVGRSASARALATRSLSFK---MSVLYFDVPEGKGKVTFP-SAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG---~~V~~~dr~~~~~~~~~~-~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
++|+|||+|.||..+|..+...| ..|.+|+++......... .++....+..+++.++|+|++++|.. ....++..
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~-~~~~v~~~ 81 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQ-VMEEVLSE 81 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHH-HHHHHHHH
Confidence 47999999999999999999888 789999998644321111 14444567888899999999999843 23334322
Q ss_pred HHhhccCCCcEEEEcCCChhhcHHHHHHHHH
Q 007040 239 ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269 (620)
Q Consensus 239 ~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~ 269 (620)
....+ +.++|.+.-|- ..+.+.+.+.
T Consensus 82 -l~~~~--~~~vvs~~~gi--~~~~l~~~~~ 107 (267)
T PRK11880 82 -LKGQL--DKLVVSIAAGV--TLARLERLLG 107 (267)
T ss_pred -HHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence 22223 46788776653 4555655543
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.4e-05 Score=78.66 Aligned_cols=90 Identities=18% Similarity=0.180 Sum_probs=64.3
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc---CCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHH
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP---SAARRMDTLNDLLAASDVISLHCAVTDETIQIINAE 239 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~---~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~ 239 (620)
++++|+|.|+||..+|+++...|++|++-+++.+....... .......+.++..+.+|||++.+|...- .++ .++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~-~~v-~~~ 79 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAI-PDV-LAE 79 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHH-HhH-HHH
Confidence 57999999999999999999999999999776643221110 1112334678889999999999997632 222 244
Q ss_pred HhhccCCCcEEEEcCC
Q 007040 240 CLQHIKPGAFLVNTGS 255 (620)
Q Consensus 240 ~L~~MK~gAiLINvgR 255 (620)
....+. |.++|++.-
T Consensus 80 l~~~~~-~KIvID~tn 94 (211)
T COG2085 80 LRDALG-GKIVIDATN 94 (211)
T ss_pred HHHHhC-CeEEEecCC
Confidence 444555 889998865
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=97.91 E-value=5e-05 Score=65.43 Aligned_cols=66 Identities=15% Similarity=0.226 Sum_probs=57.2
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhC-CCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSF-KMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~Lkaf-G~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
.+.+++++|+|.|.+|+.++..+..+ +.+|.+||+ |+|+.+.+.. +++.
T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r--------------------------di~i~~~~~~----~~~~ 69 (86)
T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR--------------------------DILVTATPAG----VPVL 69 (86)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--------------------------CEEEEcCCCC----CCch
Confidence 36889999999999999999999998 678999988 9999998854 5666
Q ss_pred HHHhhccCCCcEEEEcC
Q 007040 238 AECLQHIKPGAFLVNTG 254 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvg 254 (620)
++.+..|++++++++++
T Consensus 70 ~~~~~~~~~~~~v~~~a 86 (86)
T cd05191 70 EEATAKINEGAVVIDLA 86 (86)
T ss_pred HHHHHhcCCCCEEEecC
Confidence 66788999999999874
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.2e-05 Score=77.45 Aligned_cols=137 Identities=15% Similarity=0.144 Sum_probs=78.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-------cccc-------------CCceecCCHHhhhcCCcEE
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-------VTFP-------------SAARRMDTLNDLLAASDVI 222 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~-------~~~~-------------~g~~~~~sL~eLL~~sDvV 222 (620)
|+|+|||+|.+|..+|..+...|++|++||.+..... ...+ .......+..+.+.+||++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 5899999999999999999999999999998753111 0000 1123446778889999999
Q ss_pred EEcccCChhhHh------hc--CHHHhhccCCCcEEEEcCCChhhcHHH-HHHHHHcCCcceeEeecCCCC-----CCCC
Q 007040 223 SLHCAVTDETIQ------II--NAECLQHIKPGAFLVNTGSSQLLDDCA-VKQLLIDGTLAGCALDGAEGP-----QWME 288 (620)
Q Consensus 223 il~lPlT~~T~~------lI--~~~~L~~MK~gAiLINvgRG~vVDe~A-L~~AL~~G~I~GAaLDV~E~P-----~~~~ 288 (620)
++|+|....-.+ +. -......++++.++|.-+.-.+=-.+. +...|++....+.-+++...| -..-
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G~a~ 160 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREGRAI 160 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TTSHH
T ss_pred EEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCCCcc
Confidence 999984332222 21 234566789999999999977755553 344444333221223332222 1222
Q ss_pred ccccCCCcEEE
Q 007040 289 AWVREMPNVLI 299 (620)
Q Consensus 289 spL~~~pNVIl 299 (620)
..+...|.||+
T Consensus 161 ~d~~~~~rvV~ 171 (185)
T PF03721_consen 161 EDFRNPPRVVG 171 (185)
T ss_dssp HHHHSSSEEEE
T ss_pred hhccCCCEEEE
Confidence 35666777763
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=97.81 E-value=1.9e-05 Score=76.26 Aligned_cols=97 Identities=11% Similarity=0.143 Sum_probs=68.5
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc---cccCC-----------------------ceecCC
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV---TFPSA-----------------------ARRMDT 211 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~---~~~~g-----------------------~~~~~s 211 (620)
..+...+|.|+|.|+.|+..++.|.++|++|..+|.+...... ..... ......
T Consensus 16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
T PF01262_consen 16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESN 95 (168)
T ss_dssp TEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred CCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHH
Confidence 4578899999999999999999999999999999987532110 00000 111235
Q ss_pred HHhhhcCCcEEEEccc-CChhhHhhcCHHHhhccCCCcEEEEcC
Q 007040 212 LNDLLAASDVISLHCA-VTDETIQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 212 L~eLL~~sDvVil~lP-lT~~T~~lI~~~~L~~MK~gAiLINvg 254 (620)
|.+.++.+|+|++++- ..+..-.+|..+.++.|||++++|+++
T Consensus 96 f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 96 FAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 7888999999996443 455666799999999999999999985
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=97.81 E-value=8.5e-05 Score=72.00 Aligned_cols=79 Identities=24% Similarity=0.378 Sum_probs=59.3
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.||++.|||.+. +|+++|.+|...|+.|..++.+. .++.+.+++||+|+.+++-. ++|.
T Consensus 33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T--------------~~l~~~~~~ADIVVsa~G~~----~~i~ 94 (160)
T PF02882_consen 33 DLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT--------------KNLQEITRRADIVVSAVGKP----NLIK 94 (160)
T ss_dssp STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS--------------SSHHHHHTTSSEEEE-SSST----T-B-
T ss_pred CCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC--------------CcccceeeeccEEeeeeccc----cccc
Confidence 58999999999995 99999999999999999998654 36889999999999999843 5776
Q ss_pred HHHhhccCCCcEEEEcCCChh
Q 007040 238 AECLQHIKPGAFLVNTGSSQL 258 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~v 258 (620)
.+ ++|+|+++||+|.-.+
T Consensus 95 ~~---~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 95 AD---WIKPGAVVIDVGINYV 112 (160)
T ss_dssp GG---GS-TTEEEEE--CEEE
T ss_pred cc---cccCCcEEEecCCccc
Confidence 54 5799999999988654
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=9.3e-05 Score=77.82 Aligned_cols=78 Identities=22% Similarity=0.311 Sum_probs=66.6
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||.|. +|+.+|.+|...|++|++++.+. .+|.+.+.+||+|+.+++-. ++|.
T Consensus 156 ~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvi~avG~p----~~v~ 217 (285)
T PRK10792 156 DTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT--------------KNLRHHVRNADLLVVAVGKP----GFIP 217 (285)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC--------------CCHHHHHhhCCEEEEcCCCc----cccc
Confidence 58999999999999 99999999999999999997642 36899999999999999633 4666
Q ss_pred HHHhhccCCCcEEEEcCCCh
Q 007040 238 AECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~ 257 (620)
. ..+|+|+++||+|--.
T Consensus 218 ~---~~vk~gavVIDvGin~ 234 (285)
T PRK10792 218 G---EWIKPGAIVIDVGINR 234 (285)
T ss_pred H---HHcCCCcEEEEccccc
Confidence 5 5678999999999543
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=97.77 E-value=6e-05 Score=77.75 Aligned_cols=126 Identities=20% Similarity=0.227 Sum_probs=80.2
Q ss_pred HHHHHhhCC--CEEEEECCCCCCCCccccCCcee-cCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEc
Q 007040 177 LATRSLSFK--MSVLYFDVPEGKGKVTFPSAARR-MDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNT 253 (620)
Q Consensus 177 vA~~LkafG--~~V~~~dr~~~~~~~~~~~g~~~-~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINv 253 (620)
+|+.|+..| .+|++||+++.....+...|+.. ..+-.+.+.++|+|++|+|.. .+..++ .+....+++|++++++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~-~~~~~l-~~~~~~~~~~~iv~Dv 78 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVS-AIEDVL-EEIAPYLKPGAIVTDV 78 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HH-HHHHHH-HHHHCGS-TTSEEEE-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHH-HHHHHH-HHhhhhcCCCcEEEEe
Confidence 577788777 79999999886555443444432 122256889999999999954 344444 3455679999999999
Q ss_pred CCChhhcHHHHHHHHHc--CCcceeEeecCCC--CCCCCccccCCCcEEEcCCCC
Q 007040 254 GSSQLLDDCAVKQLLID--GTLAGCALDGAEG--PQWMEAWVREMPNVLILPRSA 304 (620)
Q Consensus 254 gRG~vVDe~AL~~AL~~--G~I~GAaLDV~E~--P~~~~spL~~~pNVIlTPHiA 304 (620)
+.-+.--.+++.+.+.. ..+.+..+=..|. +......|++--++|++|+-.
T Consensus 79 ~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~ 133 (258)
T PF02153_consen 79 GSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED 133 (258)
T ss_dssp -S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT
T ss_pred CCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCC
Confidence 99877666677776662 2355555544442 334566788889999999876
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.4e-05 Score=86.15 Aligned_cols=94 Identities=14% Similarity=0.179 Sum_probs=68.2
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCC-CEEEEECCCCCCCCcc-ccCC--ceecCCHHhhhcCCcEEEEcccCChhhHh
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFK-MSVLYFDVPEGKGKVT-FPSA--ARRMDTLNDLLAASDVISLHCAVTDETIQ 234 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG-~~V~~~dr~~~~~~~~-~~~g--~~~~~sL~eLL~~sDvVil~lPlT~~T~~ 234 (620)
.+.|++++|||.|.||..+++.|..+| .+|++++++....... ...+ .....++.+++..+|+|+.+++.+ ..
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~---~~ 253 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAP---HP 253 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCC---Cc
Confidence 478999999999999999999999999 6899999986442211 1111 222356778889999999997644 45
Q ss_pred hcCHHHhhccC----CCcEEEEcCC
Q 007040 235 IINAECLQHIK----PGAFLVNTGS 255 (620)
Q Consensus 235 lI~~~~L~~MK----~gAiLINvgR 255 (620)
+|+.+.+..+. ...++||.+-
T Consensus 254 ii~~e~l~~~~~~~~~~~~viDla~ 278 (417)
T TIGR01035 254 IVSKEDVERALRERTRPLFIIDIAV 278 (417)
T ss_pred eEcHHHHHHHHhcCCCCeEEEEeCC
Confidence 78888777652 2346667654
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.76 E-value=4.1e-05 Score=79.35 Aligned_cols=105 Identities=18% Similarity=0.256 Sum_probs=70.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhC--CCE-EEEECCCCCCCCccc-cCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 163 LVLGIVGRSASARALATRSLSF--KMS-VLYFDVPEGKGKVTF-PSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf--G~~-V~~~dr~~~~~~~~~-~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
++|||||+|.||+.+++.+... +++ +.++|++........ ..+...+.++++++.++|+|++|+|.. ...-+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~--~~~~~-- 77 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVN--AVEEV-- 77 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChH--HHHHH--
Confidence 4799999999999999998865 566 456888764322111 123445678999999999999999843 22111
Q ss_pred HHhhccCCCcEEEEcCCChhhcH---HHHHHHHHcCC
Q 007040 239 ECLQHIKPGAFLVNTGSSQLLDD---CAVKQLLIDGT 272 (620)
Q Consensus 239 ~~L~~MK~gAiLINvgRG~vVDe---~AL~~AL~~G~ 272 (620)
....++.|.-+|..+-|.+.|. +.|.++.+++.
T Consensus 78 -~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g 113 (265)
T PRK13304 78 -VPKSLENGKDVIIMSVGALADKELFLKLYKLAKENN 113 (265)
T ss_pred -HHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcC
Confidence 2233455666666777777664 35666666654
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=9.9e-05 Score=77.66 Aligned_cols=77 Identities=25% Similarity=0.355 Sum_probs=66.2
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||.|. +|+.+|.+|...|++|++++... .+|.+...+||+|+.++.-- ++|.
T Consensus 161 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvv~AvG~p----~~i~ 222 (287)
T PRK14176 161 DIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT--------------DDLKKYTLDADILVVATGVK----HLIK 222 (287)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC--------------CCHHHHHhhCCEEEEccCCc----cccC
Confidence 58999999999999 99999999999999999998532 36889999999999987643 4776
Q ss_pred HHHhhccCCCcEEEEcCCC
Q 007040 238 AECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG 256 (620)
.+ ++|+|+++||+|--
T Consensus 223 ~~---~vk~gavVIDvGin 238 (287)
T PRK14176 223 AD---MVKEGAVIFDVGIT 238 (287)
T ss_pred HH---HcCCCcEEEEeccc
Confidence 65 68899999999864
|
|
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00014 Score=77.49 Aligned_cols=140 Identities=17% Similarity=0.188 Sum_probs=98.3
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcC-CcEEEEcccCChhhHhhcCHH
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAA-SDVISLHCAVTDETIQIINAE 239 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~-sDvVil~lPlT~~T~~lI~~~ 239 (620)
.-.+|||||+|++|+-+|..+-..|+.|+.+||..-. ..+...|....+.+.+++++ +|+|++|+... .+..++-.-
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdys-saa~~yg~~~ft~lhdlcerhpDvvLlctsil-siekilaty 128 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYS-SAAEKYGSAKFTLLHDLCERHPDVVLLCTSIL-SIEKILATY 128 (480)
T ss_pred cceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhH-HHHHHhcccccccHHHHHhcCCCEEEEEehhh-hHHHHHHhc
Confidence 3467999999999999999999999999999998732 22233455566778888765 89999998743 344455444
Q ss_pred HhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCC--CCCCCCccccCCCcEEEcCCCCC
Q 007040 240 CLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE--GPQWMEAWVREMPNVLILPRSAD 305 (620)
Q Consensus 240 ~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E--~P~~~~spL~~~pNVIlTPHiAg 305 (620)
=++++|.|++++++-..+...-.++.+-|-+.-- .|-+.. .|...++....+|=|++-=.++.
T Consensus 129 pfqrlrrgtlfvdvlSvKefek~lfekYLPkdfD---IlctHpmfGPksvnh~wqglpfVydkvRig~ 193 (480)
T KOG2380|consen 129 PFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFD---ILCTHPMFGPKSVNHEWQGLPFVYDKVRIGY 193 (480)
T ss_pred CchhhccceeEeeeeecchhHHHHHHHhCccccc---eEeecCCcCCCcCCCccccCceEEEEeeccc
Confidence 5678999999999999888777777777643211 222222 24445666666777776655543
|
|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=7.8e-05 Score=78.17 Aligned_cols=78 Identities=24% Similarity=0.353 Sum_probs=68.1
Q ss_pred eecCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG-~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||.+ ..|+.+|.+|..+|++|..+..+. .+|.+.+++||+|+.+++.. ++|.
T Consensus 149 ~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t--------------~~L~~~~~~ADIvI~Avgk~----~lv~ 210 (279)
T PRK14178 149 SIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT--------------ENLKAELRQADILVSAAGKA----GFIT 210 (279)
T ss_pred CCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh--------------hHHHHHHhhCCEEEECCCcc----cccC
Confidence 5899999999999 999999999999999999988543 36899999999999999744 6888
Q ss_pred HHHhhccCCCcEEEEcCCCh
Q 007040 238 AECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~ 257 (620)
++.+ |||+++||+|-..
T Consensus 211 ~~~v---k~GavVIDVgi~~ 227 (279)
T PRK14178 211 PDMV---KPGATVIDVGINQ 227 (279)
T ss_pred HHHc---CCCcEEEEeeccc
Confidence 8774 9999999998654
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=9e-05 Score=79.83 Aligned_cols=95 Identities=13% Similarity=0.086 Sum_probs=74.1
Q ss_pred hHHHHHHHhhCCCEEEEECCCCCCC-----CccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCc
Q 007040 174 ARALATRSLSFKMSVLYFDVPEGKG-----KVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGA 248 (620)
Q Consensus 174 G~~vA~~LkafG~~V~~~dr~~~~~-----~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gA 248 (620)
|..||..|...|++|++||++.... ......|+....+..+++.+||+|++++|....+..++. .....+++|+
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~-~L~~~L~~g~ 110 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIAK-NILPHLPENA 110 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHHH-HHHhhCCCCC
Confidence 7999999999999999999976421 112234555566888899999999999997665777774 6778899999
Q ss_pred EEEEcCCChhhcH-HHHHHHHH
Q 007040 249 FLVNTGSSQLLDD-CAVKQLLI 269 (620)
Q Consensus 249 iLINvgRG~vVDe-~AL~~AL~ 269 (620)
++||++.+..... +.+.+.+.
T Consensus 111 IVId~ST~~~~~~s~~l~~~l~ 132 (342)
T PRK12557 111 VICNTCTVSPVVLYYSLEGELR 132 (342)
T ss_pred EEEEecCCCHHHHHHHHHHHhc
Confidence 9999999887665 56666664
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00011 Score=77.37 Aligned_cols=78 Identities=23% Similarity=0.313 Sum_probs=66.6
Q ss_pred eecCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG-~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||-| .+|+.+|.+|...|++|++++... .+|.+.+++||+|+.+++.. +++.
T Consensus 154 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t--------------~~l~~~~~~ADIvV~AvG~p----~~i~ 215 (285)
T PRK14191 154 EIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT--------------KDLSFYTQNADIVCVGVGKP----DLIK 215 (285)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc--------------HHHHHHHHhCCEEEEecCCC----CcCC
Confidence 5799999999999 999999999999999999985432 35889999999999999743 6788
Q ss_pred HHHhhccCCCcEEEEcCCCh
Q 007040 238 AECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~ 257 (620)
.+.+ |+|+++||+|-..
T Consensus 216 ~~~v---k~GavVIDvGi~~ 232 (285)
T PRK14191 216 ASMV---KKGAVVVDIGINR 232 (285)
T ss_pred HHHc---CCCcEEEEeeccc
Confidence 7654 8999999999654
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00013 Score=76.61 Aligned_cols=78 Identities=27% Similarity=0.350 Sum_probs=65.7
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
.+.|+++.|||.|. .|+++|..|...|++|+.+++.. .+|.+.+.++|+|+.+++. +. +|.
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t--------------~~L~~~~~~aDIvI~AtG~-~~---~v~ 217 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT--------------QNLPELVKQADIIVGAVGK-PE---LIK 217 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc--------------hhHHHHhccCCEEEEccCC-CC---cCC
Confidence 47899999999998 99999999999999999998721 3688888999999999973 22 677
Q ss_pred HHHhhccCCCcEEEEcCCCh
Q 007040 238 AECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~ 257 (620)
.+ .+++|+++||++-..
T Consensus 218 ~~---~lk~gavViDvg~n~ 234 (283)
T PRK14192 218 KD---WIKQGAVVVDAGFHP 234 (283)
T ss_pred HH---HcCCCCEEEEEEEee
Confidence 64 479999999998654
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.68 E-value=6.2e-05 Score=79.71 Aligned_cols=94 Identities=12% Similarity=0.131 Sum_probs=62.3
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCC-CEEEEECCCCCCCCcc-ccCCc--eecCCHHhhhcCCcEEEEcccCChhhHhh
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFK-MSVLYFDVPEGKGKVT-FPSAA--RRMDTLNDLLAASDVISLHCAVTDETIQI 235 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG-~~V~~~dr~~~~~~~~-~~~g~--~~~~sL~eLL~~sDvVil~lPlT~~T~~l 235 (620)
+.|++|+|||.|.||+.+++.|+..| .+|++++++....... ...+. ...+++.+.+..+|+|+.++|.... ..+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~ 254 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKI 254 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHH
Confidence 68999999999999999999999876 5899999986433211 11122 2224567788899999999996533 222
Q ss_pred cCHHHhhcc-CCCcEEEEcCC
Q 007040 236 INAECLQHI-KPGAFLVNTGS 255 (620)
Q Consensus 236 I~~~~L~~M-K~gAiLINvgR 255 (620)
+ ...+... +++.++||++-
T Consensus 255 ~-~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 255 V-ERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred H-HHHHhhCCCCCeEEEEeCC
Confidence 2 2222222 24566666553
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00027 Score=79.90 Aligned_cols=182 Identities=15% Similarity=0.162 Sum_probs=105.6
Q ss_pred cceEEEEecCCCCCHHHHhcCCCCe-EEEEecccCCccchHHHHhcCcEEEEcCCCC----h------HHHHHHHHHHHH
Q 007040 59 AAAAVLLHSLAYLPRAAQRRLRPYQ-LILCLGSSDRTVDSALAADLGLRLIHVDTSR----A------EEIADTVMALLL 127 (620)
Q Consensus 59 ~AdaVlv~s~~~l~~e~l~~lp~LK-~I~~~gaG~D~VD~~aa~erGI~VtNtpg~~----a------~aVAE~aLaLiL 127 (620)
++|+|+--. ..+.+.++.++.=+ +|....-..+.=-++.+.++||.+..-...- + .++|+.+=
T Consensus 65 ~~diilkV~--~P~~~e~~~l~~g~~li~~l~p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAG---- 138 (509)
T PRK09424 65 QSDIILKVN--APSDDEIALLREGATLVSFIWPAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAG---- 138 (509)
T ss_pred cCCEEEEeC--CCCHHHHHhcCCCCEEEEEeCcccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhH----
Confidence 577777442 34566677776644 4444444344334566788899877622211 1 22222221
Q ss_pred HHHhccHHHHHHHHHhCCCCC-CCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCc
Q 007040 128 GLLRRTHLLARHALSASGWLG-SVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA 206 (620)
Q Consensus 128 al~Rrl~~~~~~~~~~g~W~~-~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~ 206 (620)
+|-+..... .-+.... ..+.. ....+.+|.|+|.|.||...+..++.+|.+|+++|+++...+.....|.
T Consensus 139 --y~Av~~aa~---~~~~~~~g~~taa----G~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA 209 (509)
T PRK09424 139 --YRAVIEAAH---EFGRFFTGQITAA----GKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGA 209 (509)
T ss_pred --HHHHHHHHH---HhcccCCCceecc----CCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC
Confidence 111111101 1111111 11111 1356999999999999999999999999999999998754432222232
Q ss_pred ee--cC-----------------C--------HHhhhcCCcEEEEcccCChh-hHhhcCHHHhhccCCCcEEEEcCC
Q 007040 207 RR--MD-----------------T--------LNDLLAASDVISLHCAVTDE-TIQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 207 ~~--~~-----------------s--------L~eLL~~sDvVil~lPlT~~-T~~lI~~~~L~~MK~gAiLINvgR 255 (620)
.. .+ + +.+.+..+|+|+.+...... .-.+|.++.++.||||.++|++|=
T Consensus 210 ~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 210 EFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred eEEEeccccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 21 00 1 11223569999999865321 223556889999999999999863
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=97.66 E-value=6.9e-05 Score=75.20 Aligned_cols=91 Identities=10% Similarity=0.144 Sum_probs=62.2
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc--------CCc---eecCCHHhhhcCCcEEEEcccCCh
Q 007040 163 LVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFP--------SAA---RRMDTLNDLLAASDVISLHCAVTD 230 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~--------~g~---~~~~sL~eLL~~sDvVil~lPlT~ 230 (620)
++|+||| .|+||+.+|..|...|++|.+++++......... .+. ....+..+.+..+|+|++++|...
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~~ 80 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWDH 80 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHHH
Confidence 4799997 9999999999999999999999987643221100 011 122356788899999999999542
Q ss_pred hhHhhcCHHHhhccCCCcEEEEcCCC
Q 007040 231 ETIQIINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 231 ~T~~lI~~~~L~~MK~gAiLINvgRG 256 (620)
...++. ..-..++ +.++|++.-|
T Consensus 81 -~~~~l~-~l~~~l~-~~vvI~~~ng 103 (219)
T TIGR01915 81 -VLKTLE-SLRDELS-GKLVISPVVP 103 (219)
T ss_pred -HHHHHH-HHHHhcc-CCEEEEeccC
Confidence 333332 2222344 5899998766
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00017 Score=74.34 Aligned_cols=96 Identities=15% Similarity=0.214 Sum_probs=64.3
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCC----CEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 162 GLVLGIVGRSASARALATRSLSFK----MSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG----~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
.++|||||+|+||.++++.|...| -+|++++++.... +.....+..+++.++|+|++++| ...+..++.
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl~ 75 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------PFVYLQSNEELAKTCDIIVLAVK-PDLAGKVLL 75 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------CeEEeCChHHHHHhCCEEEEEeC-HHHHHHHHH
Confidence 468999999999999999998766 2599999876432 22334567788889999999988 334555554
Q ss_pred HHHhhccCCCcEEEEcCCChhhcHHHHHHHH
Q 007040 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLL 268 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL 268 (620)
+....++++ .+|.+.-| +..+.+.+.+
T Consensus 76 -~i~~~l~~~-~iIS~~aG--i~~~~l~~~~ 102 (260)
T PTZ00431 76 -EIKPYLGSK-LLISICGG--LNLKTLEEMV 102 (260)
T ss_pred -HHHhhccCC-EEEEEeCC--ccHHHHHHHc
Confidence 233345555 44555444 3344444444
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.64 E-value=4.5e-05 Score=86.27 Aligned_cols=84 Identities=12% Similarity=0.150 Sum_probs=63.8
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCccccC--Cc----eecCCHHhhhcCCcEEEEcccCChhh
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPS--AA----RRMDTLNDLLAASDVISLHCAVTDET 232 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~~~--g~----~~~~sL~eLL~~sDvVil~lPlT~~T 232 (620)
+.+++|+|||.|.||+.+++.|...|+ +|++++|+.......... +. ...+++.+++..+|+|+++.|..
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~--- 340 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSE--- 340 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCC---
Confidence 779999999999999999999999997 799999987543311110 11 12356778899999999987644
Q ss_pred HhhcCHHHhhccCC
Q 007040 233 IQIINAECLQHIKP 246 (620)
Q Consensus 233 ~~lI~~~~L~~MK~ 246 (620)
..+|..+.+..|.+
T Consensus 341 ~pvI~~e~l~~~~~ 354 (519)
T PLN00203 341 TPLFLKEHVEALPP 354 (519)
T ss_pred CCeeCHHHHHHhhh
Confidence 45788888887643
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00011 Score=77.95 Aligned_cols=106 Identities=15% Similarity=0.129 Sum_probs=72.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCC-----------------ceecCCHHhhhcCCcEEEEc
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSA-----------------ARRMDTLNDLLAASDVISLH 225 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g-----------------~~~~~sL~eLL~~sDvVil~ 225 (620)
++|+|||.|.||..+|..|...|++|.+|++.... ......+ .....++ +.+..+|+|+++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~ 80 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIG-DELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVT 80 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHH-HHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEE
Confidence 47999999999999999999999999999986421 1000001 1112344 567899999999
Q ss_pred ccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCc
Q 007040 226 CAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTL 273 (620)
Q Consensus 226 lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I 273 (620)
+|.. .+..++ ......++++.++|.+.-| +...+.+.+.+...++
T Consensus 81 vk~~-~~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~ 125 (341)
T PRK08229 81 VKSA-ATADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATV 125 (341)
T ss_pred ecCc-chHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcE
Confidence 9864 445554 3456667899999988654 3344556666655444
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00016 Score=75.11 Aligned_cols=108 Identities=10% Similarity=0.102 Sum_probs=71.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCC-------------ceecCCHHhhhcCCcEEEEcccCC
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSA-------------ARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g-------------~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
++|+|||.|.||..+|..|...|++|..|++ ....+.....+ .....++.++...+|+|++++|..
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~ 79 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY 79 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc
Confidence 4699999999999999999999999999998 32211000001 011345666678899999999954
Q ss_pred hhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 230 DETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 230 ~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
.+..++ ......++++.++|.+.-| +-..+.+.+.+...++.
T Consensus 80 -~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~ 121 (305)
T PRK12921 80 -QLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL 121 (305)
T ss_pred -CHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence 334443 2334456778888877555 33456666666554544
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00012 Score=73.83 Aligned_cols=104 Identities=11% Similarity=0.103 Sum_probs=68.0
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCC---CE-EEEECCC-CCCCCcc-ccCCceecCCHHhhhcCCcEEEEcccCChhhHhh
Q 007040 162 GLVLGIVGRSASARALATRSLSFK---MS-VLYFDVP-EGKGKVT-FPSAARRMDTLNDLLAASDVISLHCAVTDETIQI 235 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG---~~-V~~~dr~-~~~~~~~-~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~l 235 (620)
.++|||||.|+||..+|..+...| .+ |++++++ ....... ...++....++++++.++|+|++++|.. ....+
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~-~~~~v 82 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPS-AHEEL 82 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHH-HHHHH
Confidence 568999999999999999998665 33 7788864 2222211 1124444567889999999999999954 22333
Q ss_pred cCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 236 INAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 236 I~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
+. ..-..++ +.++|.+.=| +..+.|.+.+..
T Consensus 83 ~~-~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~ 113 (245)
T PRK07634 83 LA-ELSPLLS-NQLVVTVAAG--IGPSYLEERLPK 113 (245)
T ss_pred HH-HHHhhcc-CCEEEEECCC--CCHHHHHHHcCC
Confidence 32 2222334 6789998766 444456665543
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00043 Score=65.71 Aligned_cols=78 Identities=24% Similarity=0.285 Sum_probs=66.5
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||-+. +|+.+|.+|...|++|..++.+. .++++.+++||+|+.+++.. ++|.
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t--------------~~l~~~v~~ADIVvsAtg~~----~~i~ 86 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT--------------IQLQSKVHDADVVVVGSPKP----EKVP 86 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCCC----CccC
Confidence 58999999999875 69999999999999999998643 26889999999999999865 5687
Q ss_pred HHHhhccCCCcEEEEcCCCh
Q 007040 238 AECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~ 257 (620)
.+. +|||+++||++...
T Consensus 87 ~~~---ikpGa~Vidvg~~~ 103 (140)
T cd05212 87 TEW---IKPGATVINCSPTK 103 (140)
T ss_pred HHH---cCCCCEEEEcCCCc
Confidence 654 88999999998654
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00018 Score=74.46 Aligned_cols=108 Identities=8% Similarity=0.020 Sum_probs=71.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCc-----------eecCCHHhhhcCCcEEEEcccCChh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA-----------RRMDTLNDLLAASDVISLHCAVTDE 231 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~-----------~~~~sL~eLL~~sDvVil~lPlT~~ 231 (620)
++|+|||.|.||..+|..|...|++|..++++..........+. ....++.++ ..+|+|++++|.. .
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~-~ 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAY-Q 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccc-c
Confidence 46999999999999999999999999999986533221111111 123445555 8899999999954 4
Q ss_pred hHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 232 TIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 232 T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
+..++. .....+.+++.+|...-| +-.++.+.+.+....+.
T Consensus 79 ~~~~~~-~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~ 119 (304)
T PRK06522 79 LPAALP-SLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVL 119 (304)
T ss_pred HHHHHH-HHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEE
Confidence 444442 334456778888887776 32345556555554544
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.58 E-value=8.7e-05 Score=81.88 Aligned_cols=93 Identities=14% Similarity=0.139 Sum_probs=64.6
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcc-ccCC--ceecCCHHhhhcCCcEEEEcccCChhhHh
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVT-FPSA--ARRMDTLNDLLAASDVISLHCAVTDETIQ 234 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~-~~~g--~~~~~sL~eLL~~sDvVil~lPlT~~T~~ 234 (620)
.+.|++|+|||.|.||+.+++.|...|+ +|++++++....... ...+ .....++.+.+..+|+|+.++|.. ..
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~---~~ 255 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAP---HP 255 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCC---Cc
Confidence 3789999999999999999999999998 899999986442211 1111 222345667788999999998744 33
Q ss_pred hcCHHHhhcc-----CCCcEEEEcC
Q 007040 235 IINAECLQHI-----KPGAFLVNTG 254 (620)
Q Consensus 235 lI~~~~L~~M-----K~gAiLINvg 254 (620)
+|..+.++.+ +.+.++||++
T Consensus 256 ~i~~~~l~~~~~~~~~~~~vviDla 280 (423)
T PRK00045 256 IIGKGMVERALKARRHRPLLLVDLA 280 (423)
T ss_pred EEcHHHHHHHHhhccCCCeEEEEeC
Confidence 5666666543 2345555554
|
|
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00037 Score=73.39 Aligned_cols=79 Identities=23% Similarity=0.402 Sum_probs=67.0
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||-+. +|+.+|.+|...|++|+.++... .+|.+.+++||+|+.++... ++|.
T Consensus 155 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t--------------~~l~~~~~~ADIvI~AvG~p----~~i~ 216 (284)
T PRK14190 155 DISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT--------------KNLAELTKQADILIVAVGKP----KLIT 216 (284)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCCC----CcCC
Confidence 58999999999876 69999999999999999986432 36889999999999999744 5888
Q ss_pred HHHhhccCCCcEEEEcCCChh
Q 007040 238 AECLQHIKPGAFLVNTGSSQL 258 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~v 258 (620)
.+.+ |+|+++||+|.-.+
T Consensus 217 ~~~i---k~gavVIDvGi~~~ 234 (284)
T PRK14190 217 ADMV---KEGAVVIDVGVNRL 234 (284)
T ss_pred HHHc---CCCCEEEEeecccc
Confidence 8765 89999999997653
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00049 Score=68.73 Aligned_cols=91 Identities=23% Similarity=0.195 Sum_probs=66.0
Q ss_pred eeecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCc-cccCCceec--CC----HHhhhcCCcEEEEcccCC
Q 007040 158 RRCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKV-TFPSAARRM--DT----LNDLLAASDVISLHCAVT 229 (620)
Q Consensus 158 ~~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~-~~~~g~~~~--~s----L~eLL~~sDvVil~lPlT 229 (620)
.++.|+++.|||-+. +|+++|.+|...|++|+.+|.+.--... ......... .+ +.+.+++||||+.+++-.
T Consensus 58 ~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~ 137 (197)
T cd01079 58 NRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSP 137 (197)
T ss_pred CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccCCC
Confidence 468999999999987 5999999999999999999753311100 000000000 12 789999999999999954
Q ss_pred hhhHhh-cCHHHhhccCCCcEEEEcCC
Q 007040 230 DETIQI-INAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 230 ~~T~~l-I~~~~L~~MK~gAiLINvgR 255 (620)
++ |..+ ++|+|+++||+|-
T Consensus 138 ----~~~i~~d---~ik~GavVIDVGi 157 (197)
T cd01079 138 ----NYKVPTE---LLKDGAICINFAS 157 (197)
T ss_pred ----CCccCHH---HcCCCcEEEEcCC
Confidence 56 7764 4679999999984
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00015 Score=76.94 Aligned_cols=89 Identities=22% Similarity=0.232 Sum_probs=63.6
Q ss_pred cCcEEEEEeCChhhHHHHHHHhh-CC-CEEEEECCCCCCCCccccC----C--ceecCCHHhhhcCCcEEEEcccCChhh
Q 007040 161 RGLVLGIVGRSASARALATRSLS-FK-MSVLYFDVPEGKGKVTFPS----A--ARRMDTLNDLLAASDVISLHCAVTDET 232 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lka-fG-~~V~~~dr~~~~~~~~~~~----g--~~~~~sL~eLL~~sDvVil~lPlT~~T 232 (620)
..++|+|||.|.+|+.+++.+.. ++ .+|++|+|++......... + +....++++++.+||+|+++.|..
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~--- 200 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST--- 200 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---
Confidence 46789999999999999986553 55 5899999987543311111 2 344578999999999998888754
Q ss_pred HhhcCHHHhhccCCCcEEEEcCC
Q 007040 233 IQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 233 ~~lI~~~~L~~MK~gAiLINvgR 255 (620)
..+|.. +.++||+.+.-++.
T Consensus 201 ~pvl~~---~~l~~g~~i~~ig~ 220 (314)
T PRK06141 201 EPLVRG---EWLKPGTHLDLVGN 220 (314)
T ss_pred CCEecH---HHcCCCCEEEeeCC
Confidence 456665 45789995444443
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00023 Score=74.32 Aligned_cols=99 Identities=14% Similarity=0.208 Sum_probs=73.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC----CEEEEECCCCCCCC-ccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 163 LVLGIVGRSASARALATRSLSFK----MSVLYFDVPEGKGK-VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG----~~V~~~dr~~~~~~-~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++|||||.|+||++|+.-|..-| .+|++.+|+..... .....++....+..++..++|+|++++.- .. -
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavKP--q~----~ 75 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVKP--QD----L 75 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeCh--Hh----H
Confidence 57999999999999999999888 58999999875543 11223333356778899999999999973 21 1
Q ss_pred HHHhhccC---CCcEEEEcCCChhhcHHHHHHHHH
Q 007040 238 AECLQHIK---PGAFLVNTGSSQLLDDCAVKQLLI 269 (620)
Q Consensus 238 ~~~L~~MK---~gAiLINvgRG~vVDe~AL~~AL~ 269 (620)
.+.++.++ ++.++|.+.=| +..+.|.+.|.
T Consensus 76 ~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~ 108 (266)
T COG0345 76 EEVLSKLKPLTKDKLVISIAAG--VSIETLERLLG 108 (266)
T ss_pred HHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcC
Confidence 34555565 69999999877 45566666654
|
|
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0006 Score=71.76 Aligned_cols=78 Identities=19% Similarity=0.372 Sum_probs=66.3
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||.+. +|+.+|.+|...|++|+.+.... .+|.+.+++||+|+.+++-- ++|.
T Consensus 154 ~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG~~----~~i~ 215 (284)
T PRK14170 154 QIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT--------------KDLPQVAKEADILVVATGLA----KFVK 215 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCCc----CccC
Confidence 58999999999986 59999999999999999987532 36889999999999999854 5787
Q ss_pred HHHhhccCCCcEEEEcCCCh
Q 007040 238 AECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~ 257 (620)
.+. +|+|+++||+|--.
T Consensus 216 ~~~---vk~GavVIDvGin~ 232 (284)
T PRK14170 216 KDY---IKPGAIVIDVGMDR 232 (284)
T ss_pred HHH---cCCCCEEEEccCcc
Confidence 654 67999999999655
|
|
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00045 Score=72.59 Aligned_cols=78 Identities=18% Similarity=0.314 Sum_probs=65.9
Q ss_pred eecCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG-~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||-| .+|+.+|.+|...|++|..+.... .+|.+.+++||+|+.++.-. ++|.
T Consensus 154 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T--------------~~l~~~~~~ADIvV~AvGkp----~~i~ 215 (281)
T PRK14183 154 DVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT--------------KDLKAHTKKADIVIVGVGKP----NLIT 215 (281)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCcc----cccC
Confidence 5899999999999 889999999999999999886432 36889999999999999743 5787
Q ss_pred HHHhhccCCCcEEEEcCCCh
Q 007040 238 AECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~ 257 (620)
.+. .|+|+++||+|--.
T Consensus 216 ~~~---vk~gavvIDvGin~ 232 (281)
T PRK14183 216 EDM---VKEGAIVIDIGINR 232 (281)
T ss_pred HHH---cCCCcEEEEeeccc
Confidence 654 67999999999543
|
|
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00031 Score=75.45 Aligned_cols=86 Identities=16% Similarity=0.143 Sum_probs=62.3
Q ss_pred EEEEeCChhhHHHHHHHhh-CCCEEEEECCCCCCC----Cc---------------cc-cCCceecCCHHhhhcCCcEEE
Q 007040 165 LGIVGRSASARALATRSLS-FKMSVLYFDVPEGKG----KV---------------TF-PSAARRMDTLNDLLAASDVIS 223 (620)
Q Consensus 165 VGIIGlG~IG~~vA~~Lka-fG~~V~~~dr~~~~~----~~---------------~~-~~g~~~~~sL~eLL~~sDvVi 223 (620)
|||+|+|+||+.+++.+.. -+++|++++...... .. .+ ..+.....++++++..+|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 6999999999999999874 478888765422110 00 00 111223456999999999999
Q ss_pred EcccCChhhHhhcCHHHhhccCCCcEEEEc
Q 007040 224 LHCAVTDETIQIINAECLQHIKPGAFLVNT 253 (620)
Q Consensus 224 l~lPlT~~T~~lI~~~~L~~MK~gAiLINv 253 (620)
.|.| .+.++.+++.+..|+++++|+-.
T Consensus 81 e~Tp---~~~~~~na~~~~~~GakaVl~~~ 107 (333)
T TIGR01546 81 DATP---GGIGAKNKPLYEKAGVKAIFQGG 107 (333)
T ss_pred ECCC---CCCChhhHHHHHhCCcCEEEECC
Confidence 8865 45779999999999999999864
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0017 Score=73.05 Aligned_cols=136 Identities=10% Similarity=0.082 Sum_probs=86.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhC--CCEEEEECCCCCCCCc-------cccC------------CceecCCHHhhhcCCcE
Q 007040 163 LVLGIVGRSASARALATRSLSF--KMSVLYFDVPEGKGKV-------TFPS------------AARRMDTLNDLLAASDV 221 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf--G~~V~~~dr~~~~~~~-------~~~~------------g~~~~~sL~eLL~~sDv 221 (620)
++|+|||+|.+|..+|..|... |++|++||.+....+. ..+. ......++.+.+..||+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 5799999999999999999865 6899999987533221 0000 12233456778899999
Q ss_pred EEEcccCCh-----------hhHhhc--CHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCC----
Q 007040 222 ISLHCAVTD-----------ETIQII--NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGP---- 284 (620)
Q Consensus 222 Vil~lPlT~-----------~T~~lI--~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P---- 284 (620)
+++|+|... +...+. -...-..+++|.++|.-+.-.+=-.+.+...|.+.. .|.-+.|...|
T Consensus 82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g~~f~v~~~PErl~ 160 (473)
T PLN02353 82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGINFQILSNPEFLA 160 (473)
T ss_pred EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CCCCeEEEECCCccC
Confidence 999997322 111222 234556689999999988866666667777776521 12122232222
Q ss_pred -CCCCccccCCCcEEE
Q 007040 285 -QWMEAWVREMPNVLI 299 (620)
Q Consensus 285 -~~~~spL~~~pNVIl 299 (620)
-..-+.++..|.||+
T Consensus 161 ~G~a~~d~~~p~riVi 176 (473)
T PLN02353 161 EGTAIEDLFKPDRVLI 176 (473)
T ss_pred CCCcccccCCCCEEEE
Confidence 222335666677764
|
|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00054 Score=72.06 Aligned_cols=78 Identities=28% Similarity=0.437 Sum_probs=66.3
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||-+. +|+++|.+|...|++|+.+.... .+|.+.+++||+|+.+++-. ++|.
T Consensus 153 ~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG~p----~~i~ 214 (282)
T PRK14169 153 DVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT--------------RNLKQLTKEADILVVAVGVP----HFIG 214 (282)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhhCCEEEEccCCc----CccC
Confidence 57999999999986 59999999999999999986533 26889999999999999854 6788
Q ss_pred HHHhhccCCCcEEEEcCCCh
Q 007040 238 AECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~ 257 (620)
.+ ++|+|+++||+|--.
T Consensus 215 ~~---~vk~GavVIDvGin~ 231 (282)
T PRK14169 215 AD---AVKPGAVVIDVGISR 231 (282)
T ss_pred HH---HcCCCcEEEEeeccc
Confidence 75 478999999999644
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0006 Score=74.27 Aligned_cols=140 Identities=16% Similarity=0.116 Sum_probs=90.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-------------------ccccCCc-eecCCHHhhhcCCcEE
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-------------------VTFPSAA-RRMDTLNDLLAASDVI 222 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~-------------------~~~~~g~-~~~~sL~eLL~~sDvV 222 (620)
.+|||||+|-||-++|..+...|++|+|||.+....+ .....|. ....+.. .++.||++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~-~l~~~dv~ 88 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPE-ELKECDVF 88 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChh-hcccCCEE
Confidence 7899999999999999999999999999998864322 0111121 2233444 44599999
Q ss_pred EEcccCChhhH-------hhcC--HHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcC--CcceeEeecCC---C----C
Q 007040 223 SLHCAVTDETI-------QIIN--AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDG--TLAGCALDGAE---G----P 284 (620)
Q Consensus 223 il~lPlT~~T~-------~lI~--~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G--~I~GAaLDV~E---~----P 284 (620)
++|+|. |-+. -+.+ +..-..|++|.++|-=|.-..=..+.++.-|-+. .+. ..-|.+- + |
T Consensus 89 iI~VPT-Pl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~-~~~Df~laysPERv~P 166 (436)
T COG0677 89 IICVPT-PLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLK-FGEDFYLAYSPERVLP 166 (436)
T ss_pred EEEecC-CcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCc-ccceeeEeeCccccCC
Confidence 999993 3222 1222 2345679999999998887777777777776553 343 3456541 1 2
Q ss_pred CCCCccccCCCcEEEcCCCCCCcHHH
Q 007040 285 QWMEAWVREMPNVLILPRSADYSEEV 310 (620)
Q Consensus 285 ~~~~spL~~~pNVIlTPHiAg~T~ea 310 (620)
-.....+-..|.| +||.++..
T Consensus 167 G~~~~el~~~~kV-----IgG~tp~~ 187 (436)
T COG0677 167 GNVLKELVNNPKV-----IGGVTPKC 187 (436)
T ss_pred CchhhhhhcCCce-----eecCCHHH
Confidence 2223345556666 46666553
|
|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00057 Score=72.33 Aligned_cols=115 Identities=23% Similarity=0.245 Sum_probs=82.4
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||-+. +|+++|.+|...|++|+.+.... .+|.+.+++||+|+.+++-. ++|.
T Consensus 155 ~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvIsAvGkp----~~i~ 216 (297)
T PRK14186 155 DIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT--------------QDLASITREADILVAAAGRP----NLIG 216 (297)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCc----CccC
Confidence 58999999999986 59999999999999999986532 36889999999999999844 5787
Q ss_pred HHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEEEcCCCCCCcHHH
Q 007040 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEV 310 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVIlTPHiAg~T~ea 310 (620)
.+ ++|+|+++||+|--.+.+.. .+|++. =||-.+. ..+. --.+||--+|.-+-+
T Consensus 217 ~~---~ik~gavVIDvGin~~~~~~------~~gkl~---GDvd~~~------v~~~-a~~iTPVPGGVGp~T 270 (297)
T PRK14186 217 AE---MVKPGAVVVDVGIHRLPSSD------GKTRLC---GDVDFEE------VEPV-AAAITPVPGGVGPMT 270 (297)
T ss_pred HH---HcCCCCEEEEeccccccccc------cCCcee---CCccHHH------HHhh-ceEecCCCCCchHHH
Confidence 65 46799999999976543221 135543 3553110 0011 135999877765543
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00058 Score=71.84 Aligned_cols=78 Identities=21% Similarity=0.309 Sum_probs=66.5
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||.+. +|+++|.+|...|++|+.+..+. .+|.+..++||+|+.++.-. ++|.
T Consensus 154 ~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T--------------~nl~~~~~~ADIvIsAvGkp----~~i~ 215 (282)
T PRK14166 154 DLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAGCV----NLLR 215 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCc----CccC
Confidence 57999999999986 59999999999999999988543 36899999999999999854 6788
Q ss_pred HHHhhccCCCcEEEEcCCCh
Q 007040 238 AECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~ 257 (620)
.+ +.|+|+++||+|--.
T Consensus 216 ~~---~vk~GavVIDvGin~ 232 (282)
T PRK14166 216 SD---MVKEGVIVVDVGINR 232 (282)
T ss_pred HH---HcCCCCEEEEecccc
Confidence 75 467999999998543
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00059 Score=71.80 Aligned_cols=78 Identities=22% Similarity=0.318 Sum_probs=66.2
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||.+. +|+.+|.+|...|++|+.++... .+|.+..++||+|+.+++-. ++|.
T Consensus 156 ~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T--------------~~l~~~~~~ADIvIsAvGk~----~~i~ 217 (284)
T PRK14177 156 DVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT--------------QNLPSIVRQADIIVGAVGKP----EFIK 217 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEeCCCc----CccC
Confidence 58999999999986 59999999999999999998543 36889999999999999844 6787
Q ss_pred HHHhhccCCCcEEEEcCCCh
Q 007040 238 AECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~ 257 (620)
.+. +|+|+++||+|--.
T Consensus 218 ~~~---ik~gavVIDvGin~ 234 (284)
T PRK14177 218 ADW---ISEGAVLLDAGYNP 234 (284)
T ss_pred HHH---cCCCCEEEEecCcc
Confidence 654 67999999998643
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00031 Score=72.81 Aligned_cols=114 Identities=16% Similarity=0.123 Sum_probs=74.3
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc---cc-CCceecCCHHhh-hcCCcEEEEcccCC--hhh
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT---FP-SAARRMDTLNDL-LAASDVISLHCAVT--DET 232 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~---~~-~g~~~~~sL~eL-L~~sDvVil~lPlT--~~T 232 (620)
..+++++|+|.|.+|++++..|...|++|++++|+....... .. .+.....++++. +..+|+|++++|.. +..
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~ 194 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNI 194 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCC
Confidence 457889999999999999999999999999999986432211 00 011122234433 35799999999975 211
Q ss_pred Hh-hcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 233 IQ-IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 233 ~~-lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
.. .+. +..++++.+++++.-.+... .|.+..++..+. .+|.
T Consensus 195 ~~~~~~---~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~~--~vdG 236 (270)
T TIGR00507 195 DEPPVP---AEKLKEGMVVYDMVYNPGET--PFLAEAKSLGTK--TIDG 236 (270)
T ss_pred CCCCCC---HHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCe--eeCC
Confidence 11 222 34578888899887765432 466666655443 5555
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00065 Score=71.33 Aligned_cols=78 Identities=21% Similarity=0.370 Sum_probs=66.4
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||.+. +|+++|.+|...|++|+.++.+. .+|.+..++||+|+.+++-. ++|.
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T--------------~~l~~~~~~ADIvIsAvGkp----~~i~ 216 (278)
T PRK14172 155 DIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT--------------KNLKEVCKKADILVVAIGRP----KFID 216 (278)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCc----CccC
Confidence 58999999999986 59999999999999999998532 36899999999999999854 6788
Q ss_pred HHHhhccCCCcEEEEcCCCh
Q 007040 238 AECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~ 257 (620)
.+. +|+|+++||+|--.
T Consensus 217 ~~~---ik~gavVIDvGin~ 233 (278)
T PRK14172 217 EEY---VKEGAIVIDVGTSS 233 (278)
T ss_pred HHH---cCCCcEEEEeeccc
Confidence 755 78999999998544
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00075 Score=68.66 Aligned_cols=153 Identities=14% Similarity=0.162 Sum_probs=101.5
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCE---EEEECCCC----CCCC------ccc--cCCceec-CCHHhhhcCCcEE
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMS---VLYFDVPE----GKGK------VTF--PSAARRM-DTLNDLLAASDVI 222 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~---V~~~dr~~----~~~~------~~~--~~g~~~~-~sL~eLL~~sDvV 222 (620)
.+.++++.|+|.|.+|+.+|..|...|++ |+.+|++. .... ..+ ..+.... .+|.+.+.++|+|
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dvl 101 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVF 101 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCEE
Confidence 36889999999999999999999999984 99999983 2210 001 1100011 2677888899999
Q ss_pred EEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEEEcCC
Q 007040 223 SLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPR 302 (620)
Q Consensus 223 il~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVIlTPH 302 (620)
+.+.| .++++.+.++.|.++.+++..+... .+.-+.++.+.|- . ...|...-- ..+..|+++=|=
T Consensus 102 IgaT~-----~G~~~~~~l~~m~~~~ivf~lsnP~--~e~~~~~A~~~ga-~-i~a~G~~~~------~~Q~nn~~~fPg 166 (226)
T cd05311 102 IGVSR-----PGVVKKEMIKKMAKDPIVFALANPV--PEIWPEEAKEAGA-D-IVATGRSDF------PNQVNNVLGFPG 166 (226)
T ss_pred EeCCC-----CCCCCHHHHHhhCCCCEEEEeCCCC--CcCCHHHHHHcCC-c-EEEeCCCCC------ccccceeeecch
Confidence 99987 3688899999999999999888432 3433444433322 1 133332211 126789999997
Q ss_pred CCCCcH-----HHHHHHHHHHHHHHHHHH
Q 007040 303 SADYSE-----EVWMEIRDKAISVLQTFF 326 (620)
Q Consensus 303 iAg~T~-----ea~~~~~~~a~enL~~~L 326 (620)
++-... ..-++|.-.+++.|..+.
T Consensus 167 ~~~g~~~~~~~~i~~~m~~~aa~~la~~~ 195 (226)
T cd05311 167 IFRGALDVRATKITEEMKLAAAEAIADLA 195 (226)
T ss_pred hhHHHHHcCCcCCCHHHHHHHHHHHHhhC
Confidence 553322 234667777777777754
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00066 Score=71.58 Aligned_cols=78 Identities=19% Similarity=0.306 Sum_probs=65.9
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||.+. +|+++|.+|..-|++|+.++... .+|.+.+++||+|+.++.-. ++|.
T Consensus 156 ~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T--------------~~L~~~~~~ADIvV~AvGkp----~~i~ 217 (288)
T PRK14171 156 NLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT--------------HNLSSITSKADIVVAAIGSP----LKLT 217 (288)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCC----CccC
Confidence 47999999999986 59999999999999999887532 36899999999999999844 6888
Q ss_pred HHHhhccCCCcEEEEcCCCh
Q 007040 238 AECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~ 257 (620)
.+. +|+|+++||+|--.
T Consensus 218 ~~~---vk~GavVIDvGin~ 234 (288)
T PRK14171 218 AEY---FNPESIVIDVGINR 234 (288)
T ss_pred HHH---cCCCCEEEEeeccc
Confidence 654 67999999998543
|
|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00064 Score=73.15 Aligned_cols=78 Identities=14% Similarity=0.284 Sum_probs=66.3
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||-+. +|+.+|.+|...|++|..+.... .++.+..++||||+.++.-. ++|.
T Consensus 211 ~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T--------------~nl~~~~~~ADIvIsAvGkp----~~v~ 272 (345)
T PLN02897 211 EIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT--------------KDPEQITRKADIVIAAAGIP----NLVR 272 (345)
T ss_pred CCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHHhhCCEEEEccCCc----CccC
Confidence 58999999999987 59999999999999999887543 36889999999999999854 6787
Q ss_pred HHHhhccCCCcEEEEcCCCh
Q 007040 238 AECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~ 257 (620)
.+. +|+|+++||+|--.
T Consensus 273 ~d~---vk~GavVIDVGin~ 289 (345)
T PLN02897 273 GSW---LKPGAVVIDVGTTP 289 (345)
T ss_pred HHH---cCCCCEEEEccccc
Confidence 654 67999999999654
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00015 Score=75.48 Aligned_cols=71 Identities=20% Similarity=0.188 Sum_probs=52.3
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCC-CEEEEECCCCCCCCcc---ccC-C-ceecCCHHhhhcCCcEEEEcccCC
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFK-MSVLYFDVPEGKGKVT---FPS-A-ARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG-~~V~~~dr~~~~~~~~---~~~-g-~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
.+.++++.|+|.|.+|++++..|..+| .+|++++|+....... +.. . +....++.+.+..+|+||+++|..
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g 196 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAG 196 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCC
Confidence 367899999999999999999999999 6999999986443211 100 0 011113456778899999999976
|
|
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00071 Score=71.31 Aligned_cols=79 Identities=24% Similarity=0.367 Sum_probs=67.0
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||-+. +|+.+|.+|...|++|+.+..+. .+|.+.+++||+|+.++.-. ++|.
T Consensus 152 ~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T--------------~~l~~~~~~ADIvIsAvGkp----~~i~ 213 (287)
T PRK14173 152 PLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT--------------QDLPAVTRRADVLVVAVGRP----HLIT 213 (287)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCCc----CccC
Confidence 58999999999876 69999999999999999887543 36889999999999999844 6887
Q ss_pred HHHhhccCCCcEEEEcCCChh
Q 007040 238 AECLQHIKPGAFLVNTGSSQL 258 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~v 258 (620)
.+. +|+|+++||+|.-.+
T Consensus 214 ~~~---vk~GavVIDVGin~~ 231 (287)
T PRK14173 214 PEM---VRPGAVVVDVGINRV 231 (287)
T ss_pred HHH---cCCCCEEEEccCccc
Confidence 755 589999999997654
|
|
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00042 Score=74.04 Aligned_cols=89 Identities=15% Similarity=0.198 Sum_probs=66.5
Q ss_pred CcEEEEEeCChhhHHHHHHHhh-C-CCEEEEECCCCCCCCccc----cCC--ceecCCHHhhhcCCcEEEEcccCChhhH
Q 007040 162 GLVLGIVGRSASARALATRSLS-F-KMSVLYFDVPEGKGKVTF----PSA--ARRMDTLNDLLAASDVISLHCAVTDETI 233 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lka-f-G~~V~~~dr~~~~~~~~~----~~g--~~~~~sL~eLL~~sDvVil~lPlT~~T~ 233 (620)
-+++||||.|.+|+..++.+.. + .-+|.+||++........ ..+ +..+.+.++++++||+|++|+|.+ .
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~---~ 204 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSR---K 204 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCC---C
Confidence 4679999999999997777653 2 348999999975543111 112 345678999999999999999864 3
Q ss_pred hhcCHHHhhccCCCcEEEEcCCC
Q 007040 234 QIINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgRG 256 (620)
.+|..+ .+|||+.++++|.-
T Consensus 205 P~~~~~---~l~~g~~v~~vGs~ 224 (325)
T TIGR02371 205 PVVKAD---WVSEGTHINAIGAD 224 (325)
T ss_pred cEecHH---HcCCCCEEEecCCC
Confidence 566654 46999999999853
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0008 Score=71.30 Aligned_cols=132 Identities=16% Similarity=0.180 Sum_probs=88.0
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||-+. +|+++|.+|...|++|+.++... .+|.+.+++||+|+.++.-. ++|.
T Consensus 164 ~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T--------------~nl~~~~~~ADIvv~AvGk~----~~i~ 225 (299)
T PLN02516 164 PIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRT--------------PDPESIVREADIVIAAAGQA----MMIK 225 (299)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCc----CccC
Confidence 58999999999986 59999999999999999997542 36889999999999999753 6887
Q ss_pred HHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcC-CcceeEeecCCCCCCCCccccCCCcEEEcCCCCCCcHHHHHHHHH
Q 007040 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDG-TLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRD 316 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G-~I~GAaLDV~E~P~~~~spL~~~pNVIlTPHiAg~T~ea~~~~~~ 316 (620)
.+. +|+|+++||+|--.+.+. ...+| + ..=||-.+.. ...--.+||=-+|.-+-+..-+.+
T Consensus 226 ~~~---vk~gavVIDvGin~~~~~-----~~~~g~k---l~GDvd~e~v-------~~~a~~iTPVPGGVGp~T~a~L~~ 287 (299)
T PLN02516 226 GDW---IKPGAAVIDVGTNAVSDP-----SKKSGYR---LVGDVDFAEV-------SKVAGWITPVPGGVGPMTVAMLLK 287 (299)
T ss_pred HHH---cCCCCEEEEeeccccCcc-----cccCCCc---eEcCcChHHh-------hhhceEecCCCCCchHHHHHHHHH
Confidence 654 679999999986442211 11123 3 3446632100 001124899767765544444444
Q ss_pred HHHHHHHHHH
Q 007040 317 KAISVLQTFF 326 (620)
Q Consensus 317 ~a~enL~~~L 326 (620)
.+++..+++|
T Consensus 288 N~v~a~~~~~ 297 (299)
T PLN02516 288 NTVDGAKRVF 297 (299)
T ss_pred HHHHHHHHHh
Confidence 4444444443
|
|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0008 Score=71.15 Aligned_cols=78 Identities=19% Similarity=0.308 Sum_probs=66.4
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||.+. +|+++|.+|...|++|+.++... .+|.+.+++||+|+.+++-. ++|.
T Consensus 157 ~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T--------------~~l~~~~~~ADIvVsAvGkp----~~i~ 218 (294)
T PRK14187 157 NLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT--------------RDLADYCSKADILVAAVGIP----NFVK 218 (294)
T ss_pred CCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCc----CccC
Confidence 58999999999986 59999999999999999998643 36889999999999999854 5787
Q ss_pred HHHhhccCCCcEEEEcCCCh
Q 007040 238 AECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~ 257 (620)
.+. +|+|+++||+|--.
T Consensus 219 ~~~---ik~gaiVIDVGin~ 235 (294)
T PRK14187 219 YSW---IKKGAIVIDVGINS 235 (294)
T ss_pred HHH---cCCCCEEEEecccc
Confidence 655 67999999998644
|
|
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00082 Score=70.70 Aligned_cols=77 Identities=19% Similarity=0.297 Sum_probs=65.5
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||-+. +|+++|.+|...|++|+.++... .+|.+.+++||+|+.+++-. ++|.
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T--------------~dl~~~~k~ADIvIsAvGkp----~~i~ 216 (282)
T PRK14180 155 KTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT--------------TDLKSHTTKADILIVAVGKP----NFIT 216 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHhhhcCEEEEccCCc----CcCC
Confidence 58999999999986 59999999999999999997543 36888999999999999854 5787
Q ss_pred HHHhhccCCCcEEEEcCCC
Q 007040 238 AECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG 256 (620)
.+ +.|+|+++||+|--
T Consensus 217 ~~---~vk~gavVIDvGin 232 (282)
T PRK14180 217 AD---MVKEGAVVIDVGIN 232 (282)
T ss_pred HH---HcCCCcEEEEeccc
Confidence 64 46799999999853
|
|
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00079 Score=72.83 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=66.7
Q ss_pred eeecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhc
Q 007040 158 RRCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII 236 (620)
Q Consensus 158 ~~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI 236 (620)
.++.|+++.|||-+. +|+.+|.+|...|++|+.+.... .+|.+.+++||||+.++.-. ++|
T Consensus 227 i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T--------------~nl~~~~r~ADIVIsAvGkp----~~i 288 (364)
T PLN02616 227 VEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITREADIIISAVGQP----NMV 288 (364)
T ss_pred CCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCc----CcC
Confidence 368999999999986 59999999999999999986532 36889999999999999844 678
Q ss_pred CHHHhhccCCCcEEEEcCCCh
Q 007040 237 NAECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 237 ~~~~L~~MK~gAiLINvgRG~ 257 (620)
..+. +|+|+++||+|--.
T Consensus 289 ~~d~---vK~GAvVIDVGIn~ 306 (364)
T PLN02616 289 RGSW---IKPGAVVIDVGINP 306 (364)
T ss_pred CHHH---cCCCCEEEeccccc
Confidence 7654 67999999998644
|
|
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00091 Score=70.52 Aligned_cols=78 Identities=27% Similarity=0.405 Sum_probs=65.5
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhC----CCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhH
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSF----KMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI 233 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~Lkaf----G~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~ 233 (620)
++.|+++.|||-+. +|+++|.+|... +++|+.+.... .+|.+.+++||+|+.+++-.
T Consensus 150 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T--------------~~l~~~~~~ADIvV~AvG~p---- 211 (287)
T PRK14181 150 PLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS--------------ENLTEILKTADIIIAAIGVP---- 211 (287)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCc----
Confidence 58999999999986 599999999987 78999886532 36899999999999999854
Q ss_pred hhcCHHHhhccCCCcEEEEcCCCh
Q 007040 234 QIINAECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgRG~ 257 (620)
++|..+. +|+|+++||+|--.
T Consensus 212 ~~i~~~~---ik~GavVIDvGin~ 232 (287)
T PRK14181 212 LFIKEEM---IAEKAVIVDVGTSR 232 (287)
T ss_pred CccCHHH---cCCCCEEEEecccc
Confidence 6788754 67999999999654
|
|
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00093 Score=70.27 Aligned_cols=78 Identities=18% Similarity=0.278 Sum_probs=66.0
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||-+. +|+++|.+|...|++|+.+..+. .+|.+.+++||+|+.+++- -++|.
T Consensus 154 ~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T--------------~nl~~~~~~ADIvI~AvGk----~~~i~ 215 (282)
T PRK14182 154 DPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT--------------ADLAGEVGRADILVAAIGK----AELVK 215 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCC----cCccC
Confidence 47999999999986 59999999999999999987542 3688999999999999984 35788
Q ss_pred HHHhhccCCCcEEEEcCCCh
Q 007040 238 AECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~ 257 (620)
.+. +|+|+++||+|--.
T Consensus 216 ~~~---ik~gaiVIDvGin~ 232 (282)
T PRK14182 216 GAW---VKEGAVVIDVGMNR 232 (282)
T ss_pred HHH---cCCCCEEEEeecee
Confidence 654 67999999998654
|
|
| >PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00076 Score=71.41 Aligned_cols=78 Identities=21% Similarity=0.351 Sum_probs=65.4
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhh----CCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhH
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLS----FKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI 233 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~Lka----fG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~ 233 (620)
++.|+++.|||-+. +|+++|.+|.. .|++|..+..+. .++.+++++||+|+.+++..
T Consensus 156 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t--------------~~l~~~~~~ADIvI~Avg~~---- 217 (295)
T PRK14174 156 ETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT--------------KDIPSYTRQADILIAAIGKA---- 217 (295)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCcc----
Confidence 58999999999986 59999999986 588888887543 35889999999999999644
Q ss_pred hhcCHHHhhccCCCcEEEEcCCCh
Q 007040 234 QIINAECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgRG~ 257 (620)
++|..+.+ |+|+++||+|-..
T Consensus 218 ~li~~~~v---k~GavVIDVgi~~ 238 (295)
T PRK14174 218 RFITADMV---KPGAVVIDVGINR 238 (295)
T ss_pred CccCHHHc---CCCCEEEEeeccc
Confidence 68888776 9999999998544
|
|
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00037 Score=73.52 Aligned_cols=90 Identities=17% Similarity=0.152 Sum_probs=69.2
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCC-CCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGK-GKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~-~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
-|.|++|+|||+|+=|.+=|..|+--|.+|++--|.... -..+..+|.. +.+.+|+.+.||+|.+.+|...+ ..++.
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~-V~~v~ea~k~ADvim~L~PDe~q-~~vy~ 92 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFK-VYTVEEAAKRADVVMILLPDEQQ-KEVYE 92 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCE-eecHHHHhhcCCEEEEeCchhhH-HHHHH
Confidence 489999999999999999999999999998877766543 2233344444 45899999999999999996533 33555
Q ss_pred HHHhhccCCCcEE
Q 007040 238 AECLQHIKPGAFL 250 (620)
Q Consensus 238 ~~~L~~MK~gAiL 250 (620)
.+.-..|+.|+.|
T Consensus 93 ~~I~p~Lk~G~aL 105 (338)
T COG0059 93 KEIAPNLKEGAAL 105 (338)
T ss_pred HHhhhhhcCCceE
Confidence 5666778888754
|
|
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00071 Score=70.90 Aligned_cols=112 Identities=22% Similarity=0.307 Sum_probs=82.9
Q ss_pred eecCcEEEEEeCChh-hHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSAS-ARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~I-G~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
+++|+++.|||.++| |+.||..|...+++|.++.... .++.+..++||+|+.++-.. ++|.
T Consensus 153 ~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T--------------~~l~~~~k~ADIvv~AvG~p----~~i~ 214 (283)
T COG0190 153 DLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT--------------KDLASITKNADIVVVAVGKP----HFIK 214 (283)
T ss_pred CCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC--------------CCHHHHhhhCCEEEEecCCc----cccc
Confidence 589999999999986 9999999999999999998654 36889999999999999744 6777
Q ss_pred HHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecC-CCCCCCCccccCCCcEEEcCCCCCCcHHHHH
Q 007040 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGA-EGPQWMEAWVREMPNVLILPRSADYSEEVWM 312 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~-E~P~~~~spL~~~pNVIlTPHiAg~T~ea~~ 312 (620)
+ .+.|+|+++|++|--.+-+ +++. =||- +.- ..-.-.+||=-||.-+-+..
T Consensus 215 ~---d~vk~gavVIDVGinrv~~----------~kl~---GDVdf~~v--------~~~a~~iTPVPGGVGPmTva 266 (283)
T COG0190 215 A---DMVKPGAVVIDVGINRVND----------GKLV---GDVDFDSV--------KEKASAITPVPGGVGPMTVA 266 (283)
T ss_pred c---ccccCCCEEEecCCccccC----------CceE---eeccHHHH--------HHhhcccCCCCCccCHHHHH
Confidence 5 4578999999998754433 5554 3652 211 11123488877776554433
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0011 Score=72.07 Aligned_cols=97 Identities=12% Similarity=0.168 Sum_probs=68.3
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCC-------CEEEEECCCCCC---------------CC----ccccCCceecCCHH
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFK-------MSVLYFDVPEGK---------------GK----VTFPSAARRMDTLN 213 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG-------~~V~~~dr~~~~---------------~~----~~~~~g~~~~~sL~ 213 (620)
+.-++|+|||.|+.|.++|..|...| .+|..|.+.... .. ..++..+....++.
T Consensus 9 ~~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ 88 (365)
T PTZ00345 9 CGPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLK 88 (365)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHH
Confidence 45568999999999999999998655 788888776531 00 11333455567889
Q ss_pred hhhcCCcEEEEcccCChhhHhhcCHHHhh--ccCCCcEEEEcCCChh
Q 007040 214 DLLAASDVISLHCAVTDETIQIINAECLQ--HIKPGAFLVNTGSSQL 258 (620)
Q Consensus 214 eLL~~sDvVil~lPlT~~T~~lI~~~~L~--~MK~gAiLINvgRG~v 258 (620)
++++.||+|++++|.. ..+.++. ..-. .+++++++|+++-|=-
T Consensus 89 eav~~aDiIvlAVPsq-~l~~vl~-~l~~~~~l~~~~~iIS~aKGIe 133 (365)
T PTZ00345 89 EAVEDADLLIFVIPHQ-FLESVLS-QIKENNNLKKHARAISLTKGII 133 (365)
T ss_pred HHHhcCCEEEEEcChH-HHHHHHH-HhccccccCCCCEEEEEeCCcc
Confidence 9999999999999943 3344432 2223 4677889999876633
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00088 Score=71.69 Aligned_cols=101 Identities=13% Similarity=0.176 Sum_probs=73.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC----------CC----CccccCCceecCCHHhhhcCCcEEEEcccC
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEG----------KG----KVTFPSAARRMDTLNDLLAASDVISLHCAV 228 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~----------~~----~~~~~~g~~~~~sL~eLL~~sDvVil~lPl 228 (620)
++|+|||.|.-|.++|..|...|++|..|.+.+. .. ...++.......+|.+++..||+|++.+|.
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs 81 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS 81 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh
Confidence 5799999999999999999999999999987521 00 122344555677899999999999999994
Q ss_pred ChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHH
Q 007040 229 TDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVK 265 (620)
Q Consensus 229 T~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~ 265 (620)
- ..+.++.. .-..+++++.+|+++-|=-.+...+.
T Consensus 82 ~-~~r~v~~~-l~~~l~~~~~iv~~sKGie~~t~~l~ 116 (329)
T COG0240 82 Q-ALREVLRQ-LKPLLLKDAIIVSATKGLEPETGRLL 116 (329)
T ss_pred H-HHHHHHHH-HhhhccCCCeEEEEeccccCCCcchH
Confidence 3 33333322 22467899999999977544444433
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00094 Score=66.75 Aligned_cols=96 Identities=9% Similarity=0.171 Sum_probs=70.6
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCC---CCCCCcc------c---------------cC--Cce---
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVP---EGKGKVT------F---------------PS--AAR--- 207 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~---~~~~~~~------~---------------~~--g~~--- 207 (620)
..|..++|+|||.|.+|..+|..|...|. +|+.+|+. ....... . .. .+.
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~ 96 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD 96 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence 45889999999999999999999999999 79999987 2111100 0 00 000
Q ss_pred ---ecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcC
Q 007040 208 ---RMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 208 ---~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvg 254 (620)
..+++.+++..+|+|+.+ ..+.+++.++.......++...++...|
T Consensus 97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~~g 145 (200)
T TIGR02354 97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAASG 145 (200)
T ss_pred eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEEec
Confidence 112355678899999999 6888999999888888888777676433
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.001 Score=70.12 Aligned_cols=77 Identities=22% Similarity=0.262 Sum_probs=65.1
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhh----CCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhH
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLS----FKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI 233 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~Lka----fG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~ 233 (620)
++.|+++.|||-+. +|+++|.+|.. .+++|..+..+. .+|.+.+++||+|+.+++. .
T Consensus 154 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t--------------~~l~~~~~~ADIVI~AvG~----p 215 (286)
T PRK14184 154 SPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT--------------PDLAEECREADFLFVAIGR----P 215 (286)
T ss_pred CCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCC----C
Confidence 47999999999986 59999999998 789999887542 3699999999999999963 3
Q ss_pred hhcCHHHhhccCCCcEEEEcCCC
Q 007040 234 QIINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgRG 256 (620)
++|..+.+ |+|+++||+|--
T Consensus 216 ~li~~~~v---k~GavVIDVGi~ 235 (286)
T PRK14184 216 RFVTADMV---KPGAVVVDVGIN 235 (286)
T ss_pred CcCCHHHc---CCCCEEEEeeee
Confidence 67887765 999999999853
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0012 Score=69.79 Aligned_cols=93 Identities=16% Similarity=0.205 Sum_probs=63.9
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC--------------ccccCCceecCCHHhhh-cCCcEEEEccc
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK--------------VTFPSAARRMDTLNDLL-AASDVISLHCA 227 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~--------------~~~~~g~~~~~sL~eLL-~~sDvVil~lP 227 (620)
++|+|||.|.||..+|..|...|.+|..|+|+....+ ...+..+....++.+.+ ..+|+|++++|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk 80 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP 80 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence 3699999999999999999999999999999652110 00112233445677766 58999999999
Q ss_pred CChhhHhhcCHHHhh-ccCCCcEEEEcCCCh
Q 007040 228 VTDETIQIINAECLQ-HIKPGAFLVNTGSSQ 257 (620)
Q Consensus 228 lT~~T~~lI~~~~L~-~MK~gAiLINvgRG~ 257 (620)
.. .+..++. .... .+++++.+|.+.-|=
T Consensus 81 s~-~~~~~l~-~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 81 TQ-QLRTICQ-QLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred HH-HHHHHHH-HHHHhcCCCCCEEEEEEcCe
Confidence 44 3444443 2233 567777777776663
|
|
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0013 Score=69.17 Aligned_cols=110 Identities=20% Similarity=0.265 Sum_probs=81.2
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhh--CCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhh
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLS--FKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQI 235 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~Lka--fG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~l 235 (620)
++.|+++.|||-+. +|+.+|.+|.. .+++|+.+.... .+|.+.+++||+|+.++.-. ++
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T--------------~~l~~~~k~ADIvV~AvGkp----~~ 216 (284)
T PRK14193 155 ELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGT--------------RDLAAHTRRADIIVAAAGVA----HL 216 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCC--------------CCHHHHHHhCCEEEEecCCc----Cc
Confidence 58999999999876 69999999987 799999987542 36899999999999999854 57
Q ss_pred cCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEEEcCCCCCCcHHH
Q 007040 236 INAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEV 310 (620)
Q Consensus 236 I~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVIlTPHiAg~T~ea 310 (620)
|..+. +|+|+++||+|.-.+ .+|++. =||-+. . .+.. -.+||-=+|.-+-+
T Consensus 217 i~~~~---ik~GavVIDvGin~~----------~~gkl~---GDvd~~--v-----~~~a-~~iTPVPGGVGp~T 267 (284)
T PRK14193 217 VTADM---VKPGAAVLDVGVSRA----------GDGKLV---GDVHPD--V-----WEVA-GAVSPNPGGVGPMT 267 (284)
T ss_pred cCHHH---cCCCCEEEEcccccc----------CCCcEE---eecCHh--H-----HhhC-CEEeCCCCChhHHH
Confidence 88654 679999999997553 245544 355421 0 1111 25899877765543
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00066 Score=71.90 Aligned_cols=89 Identities=12% Similarity=0.076 Sum_probs=66.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhh-CCC-EEEEECCCCCCCCcccc----CCce-ecCCHHhhhcCCcEEEEcccCChhhH
Q 007040 161 RGLVLGIVGRSASARALATRSLS-FKM-SVLYFDVPEGKGKVTFP----SAAR-RMDTLNDLLAASDVISLHCAVTDETI 233 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lka-fG~-~V~~~dr~~~~~~~~~~----~g~~-~~~sL~eLL~~sDvVil~lPlT~~T~ 233 (620)
..++++|||.|.+|+..++.+.. ++. +|.+|+|+......... .+.. .+.+++++++++|+|++++|.+.
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~--- 200 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT--- 200 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC---
Confidence 56789999999999999999964 665 79999998744331110 1111 14689999999999999999663
Q ss_pred hhcCHHHhhccCCCcEEEEcCCC
Q 007040 234 QIINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgRG 256 (620)
.+|.. .+|||+.++.+|.-
T Consensus 201 Pl~~~----~~~~g~hi~~iGs~ 219 (304)
T PRK07340 201 PVYPE----AARAGRLVVAVGAF 219 (304)
T ss_pred ceeCc----cCCCCCEEEecCCC
Confidence 56654 36999999999854
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00035 Score=73.98 Aligned_cols=147 Identities=11% Similarity=0.172 Sum_probs=96.0
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC---ccccCCce----ecCCHHhhhcCCcEEEEcccCCh
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK---VTFPSAAR----RMDTLNDLLAASDVISLHCAVTD 230 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~---~~~~~g~~----~~~sL~eLL~~sDvVil~lPlT~ 230 (620)
..+...+|.|||.|-+|..-|+++.++|.+|...|.+..... ..+...+. ....+++.+..+|+||-.+=..-
T Consensus 164 pGV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpg 243 (371)
T COG0686 164 PGVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPG 243 (371)
T ss_pred CCCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecC
Confidence 346677899999999999999999999999999998853322 11211111 23457889999999998653322
Q ss_pred -hhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCC--CCCCCCccccCCCcEE--EcCCCCC
Q 007040 231 -ETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE--GPQWMEAWVREMPNVL--ILPRSAD 305 (620)
Q Consensus 231 -~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E--~P~~~~spL~~~pNVI--lTPHiAg 305 (620)
..-.++..+++++||||++||+++ ++.|.+ || +|-..+.|-+....|+ +-|.+-|
T Consensus 244 akaPkLvt~e~vk~MkpGsVivDVA-------------iDqGGc-------~Et~~~TTh~~PtY~~~gvvhY~VaNmPg 303 (371)
T COG0686 244 AKAPKLVTREMVKQMKPGSVIVDVA-------------IDQGGC-------FETSHPTTHDDPTYEVDGVVHYGVANMPG 303 (371)
T ss_pred CCCceehhHHHHHhcCCCcEEEEEE-------------EcCCCc-------eeccccccCCCCceeecCEEEEecCCCCc
Confidence 334577888999999999999984 334443 23 2545556666666654 5555555
Q ss_pred CcH-HHHHHHHHHHHHHHHH
Q 007040 306 YSE-EVWMEIRDKAISVLQT 324 (620)
Q Consensus 306 ~T~-ea~~~~~~~a~enL~~ 324 (620)
..+ .+-..+.+..+.++-.
T Consensus 304 aVprTst~AL~nat~py~l~ 323 (371)
T COG0686 304 AVPRTSTQALTNATLPYILQ 323 (371)
T ss_pred cccchhHHHhhhcchHHHHH
Confidence 432 1223333334444433
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0016 Score=70.41 Aligned_cols=92 Identities=17% Similarity=0.156 Sum_probs=66.0
Q ss_pred EEEEEeCChhhHHHHHHHhhCC--------CEEEEECCCC-------------C--CCC----ccccCCceecCCHHhhh
Q 007040 164 VLGIVGRSASARALATRSLSFK--------MSVLYFDVPE-------------G--KGK----VTFPSAARRMDTLNDLL 216 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG--------~~V~~~dr~~-------------~--~~~----~~~~~g~~~~~sL~eLL 216 (620)
+|+|||.|+.|.++|..|...| .+|..|.+.. . ... ..++..+....++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 4899999999999999998766 9999998721 0 000 01133344557899999
Q ss_pred cCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCCh
Q 007040 217 AASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 217 ~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~ 257 (620)
..||+|++++|.. ..+.++ ...-..++++.++|+++-|=
T Consensus 81 ~~ADiIIlAVPs~-~i~~vl-~~l~~~l~~~~~iVs~tKGi 119 (342)
T TIGR03376 81 KGADILVFVIPHQ-FLEGIC-KQLKGHVKPNARAISCIKGL 119 (342)
T ss_pred hcCCEEEEECChH-HHHHHH-HHHHhhcCCCCEEEEEeCCc
Confidence 9999999999943 333333 33444678899999998763
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0017 Score=68.71 Aligned_cols=78 Identities=18% Similarity=0.303 Sum_probs=64.8
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhC----CCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhH
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSF----KMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI 233 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~Lkaf----G~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~ 233 (620)
++.|+++.|||.+. +|+++|.+|... +++|+.+.... .+|.+.+++||+|+.+++-.
T Consensus 154 ~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~nl~~~~~~ADIvIsAvGkp---- 215 (293)
T PRK14185 154 ETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS--------------KNLKKECLEADIIIAALGQP---- 215 (293)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC--------------CCHHHHHhhCCEEEEccCCc----
Confidence 48999999999986 599999999876 78999886543 36889999999999999854
Q ss_pred hhcCHHHhhccCCCcEEEEcCCCh
Q 007040 234 QIINAECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgRG~ 257 (620)
++|..+ ++|+|+++||+|--.
T Consensus 216 ~~i~~~---~vk~gavVIDvGin~ 236 (293)
T PRK14185 216 EFVKAD---MVKEGAVVIDVGTTR 236 (293)
T ss_pred CccCHH---HcCCCCEEEEecCcc
Confidence 578764 478999999999644
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00099 Score=71.49 Aligned_cols=91 Identities=10% Similarity=0.123 Sum_probs=63.9
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC---------ccc------cCCceecCCHHhhhcCCcEEEEccc
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK---------VTF------PSAARRMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~---------~~~------~~g~~~~~sL~eLL~~sDvVil~lP 227 (620)
++|+|||.|.+|..+|..|...| .|..|.+++...+ ... +.......++.+.++.+|+|++++|
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp 86 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP 86 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence 67999999999999999999988 5777776532110 001 1122345678888999999999999
Q ss_pred CChhhHhhcCHHHhhccCCCcEEEEcCCC
Q 007040 228 VTDETIQIINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 228 lT~~T~~lI~~~~L~~MK~gAiLINvgRG 256 (620)
+..++..+. ..-..++++..+|++.-|
T Consensus 87 -s~~~~~vl~-~i~~~l~~~~~vIsl~kG 113 (341)
T PRK12439 87 -SHGFRGVLT-ELAKELRPWVPVVSLVKG 113 (341)
T ss_pred -HHHHHHHHH-HHHhhcCCCCEEEEEEeC
Confidence 334444443 333457888889988776
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0064 Score=66.39 Aligned_cols=181 Identities=14% Similarity=0.143 Sum_probs=123.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccC-----CceecCCHHhh---hcCCcEEEEcccCChhhHh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPS-----AARRMDTLNDL---LAASDVISLHCAVTDETIQ 234 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~-----g~~~~~sL~eL---L~~sDvVil~lPlT~~T~~ 234 (620)
..||+||+|-||+.+|......|++|.+|||+....+..... .+....+++|+ |+.---|++++-.......
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~ 83 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA 83 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence 459999999999999999999999999999998655422111 12334466665 6667788888765422233
Q ss_pred hcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCC-CCCCCccccCCCcEEEcCCCCCCcHHHHHH
Q 007040 235 IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWME 313 (620)
Q Consensus 235 lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~-P~~~~spL~~~pNVIlTPHiAg~T~ea~~~ 313 (620)
+| ..++..|-+|-++|+-|-..--|...-.++|.+..|...+.=|.-. +-...- |- | +-|.+.++|+.
T Consensus 84 ~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~G-----PS--i---MpGG~~eay~~ 152 (473)
T COG0362 84 VI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHG-----PS--I---MPGGQKEAYEL 152 (473)
T ss_pred HH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccC-----CC--c---CCCCCHHHHHH
Confidence 44 4678899999999999999999999999999999988888777643 221111 22 2 45788899988
Q ss_pred HHHHHHHHHHHHHHcCCCCCccccC--CCCccCCCcchhhhhhhc
Q 007040 314 IRDKAISVLQTFFFDGVIPKNAISD--TEGCENEIDDEIEQYNKL 356 (620)
Q Consensus 314 ~~~~a~enL~~~L~~G~~p~nvVn~--~~~y~~~~~~~~~~~~~~ 356 (620)
+..++.+ |.+- ..|++=-.-|-+ ..-|.+-+-+.-|..|-|
T Consensus 153 v~pil~~-IaAk-~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQ 195 (473)
T COG0362 153 VAPILTK-IAAK-VDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQ 195 (473)
T ss_pred HHHHHHH-HHhh-cCCCCceeeECCCCCCceeeeeecCchHHHHH
Confidence 7765544 4443 256644333332 334555555555554444
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0024 Score=75.20 Aligned_cols=116 Identities=15% Similarity=0.117 Sum_probs=83.4
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc-----------cc-------------cCCceecCCHHhhhcC
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV-----------TF-------------PSAARRMDTLNDLLAA 218 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~-----------~~-------------~~g~~~~~sL~eLL~~ 218 (620)
++|+|||.|.||..||..+...|++|+.||++...... .. ...+....+++ .++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYA-GFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-HhcC
Confidence 57999999999999999999999999999998643210 00 01122345664 4689
Q ss_pred CcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCC
Q 007040 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE 282 (620)
Q Consensus 219 sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E 282 (620)
||+|+=++|...+.+.-+-.+.=..++++++|....++ +....|.+++.. .-..+++--|.
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~-p~r~~g~Hff~ 453 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTST--ISISLLAKALKR-PENFCGMHFFN 453 (715)
T ss_pred CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCC-CccEEEEecCC
Confidence 99999999999998887777777889999988765554 445556666642 33335555453
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00052 Score=67.32 Aligned_cols=95 Identities=12% Similarity=0.036 Sum_probs=58.9
Q ss_pred eecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcc---c----cCCce-----ecCCHHhhhcCCcEEEEc
Q 007040 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVT---F----PSAAR-----RMDTLNDLLAASDVISLH 225 (620)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~---~----~~g~~-----~~~sL~eLL~~sDvVil~ 225 (620)
.+.++++.|+|. |.+|+.+++.|...|.+|+.++|+....... . ..... ..+++.+.++++|+|+.+
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~a 104 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAA 104 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEEC
Confidence 368899999995 9999999999999999999999875322110 0 00011 112334677788888888
Q ss_pred ccCChhhHhhcCHHHhhccCCCcEEEEcCCCh
Q 007040 226 CAVTDETIQIINAECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 226 lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~ 257 (620)
.|....+ .+. .-...+++.+++|+.+..
T Consensus 105 t~~g~~~--~~~--~~~~~~~~~vv~D~~~~~ 132 (194)
T cd01078 105 GAAGVEL--LEK--LAWAPKPLAVAADVNAVP 132 (194)
T ss_pred CCCCcee--chh--hhcccCceeEEEEccCCC
Confidence 8765321 111 111234455666665544
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >KOG0067 consensus Transcription factor CtBP [Transcription] | Back alignment and domain information |
|---|
Probab=97.08 E-value=5.2e-05 Score=81.39 Aligned_cols=204 Identities=18% Similarity=0.070 Sum_probs=154.6
Q ss_pred HHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCc-EEEEEeCChhhHHHHHHHh--hC-CCEEEEECCCCCCCCc
Q 007040 125 LLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGL-VLGIVGRSASARALATRSL--SF-KMSVLYFDVPEGKGKV 200 (620)
Q Consensus 125 LiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~Gk-tVGIIGlG~IG~~vA~~Lk--af-G~~V~~~dr~~~~~~~ 200 (620)
..+.+.+..+.........++|-+...|+ +... |+++. .+..+++|-.+.. +- -|.+.+++-...+.+.
T Consensus 20 ~~~~lngp~h~~p~~aLld~rdc~vemPi------lk~~atvafc-daqstqeIhekvLneavgam~yh~i~l~reDlEk 92 (435)
T KOG0067|consen 20 RPLGLNGPLHPRPLVALLDGRDCGVEMPI------LKDLATVAFC-DAQSTQEIHEKVLNEAVGAMMYHTITLPREDLEK 92 (435)
T ss_pred eecccCCCCCCCcchhhcccccccccchh------hhcchheeee-cccchHHHHHHHHHHhhhcceeeecccchhhHHH
Confidence 44445555544444445678898766554 2222 34443 4566788876543 22 4577788766655543
Q ss_pred cccCCc----eecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCccee
Q 007040 201 TFPSAA----RRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGC 276 (620)
Q Consensus 201 ~~~~g~----~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GA 276 (620)
..+..+ ....++.++.+.+|+.|.+|-++..+...++...+.+.+ +.+..|+.-....++.+-.+.+.++.+.++
T Consensus 93 fkalRv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~hIl-~l~rrntw~cq~l~eg~~~q~~~q~~e~a~ 171 (435)
T KOG0067|consen 93 FKALRVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCHIL-NLYRRNTWLCQALREGTCTQGLEQVREAAC 171 (435)
T ss_pred hhhhceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHHHHH-hhhcccchhhhhhcccceeechhhhhhhhh
Confidence 333322 235678899999999999999999999999999999998 999999999999999999999999999999
Q ss_pred EeecCCCCCCCCccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCccccCCC
Q 007040 277 ALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTE 340 (620)
Q Consensus 277 aLDV~E~P~~~~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~p~nvVn~~~ 340 (620)
++|-.+.|.+...+ ..+|+.+-|-.|-+..+.+..+...+.+-|.++|..++.+. +.+..
T Consensus 172 g~~~~~G~~~g~~g--~gr~g~av~~~A~afg~~~ifydp~~~~g~~~~lg~~rVyt--lqd~~ 231 (435)
T KOG0067|consen 172 GLARIRGPTLGLIG--FGRTGQAVALRAKAFGFVVIFYDPYLIDGIDKSLGLQRVYT--LQDLL 231 (435)
T ss_pred ccccccccceeeec--cccccceehhhhhcccceeeeecchhhhhhhhhcccceecc--cchhh
Confidence 99999988776544 78999999999999999999999999999999996666554 54443
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0046 Score=65.37 Aligned_cols=112 Identities=13% Similarity=0.067 Sum_probs=72.5
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc------cCC------ceecCCHHhhhcCCcEEEEcccCC
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF------PSA------ARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~------~~g------~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
.++|+|||.|.||..+|..|...|++|.++.+......... ..+ .....+.+ .+..+|+|+++++..
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vilavK~~ 83 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSAE-DMPPCDWVLVGLKTT 83 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcchh-hcCCCCEEEEEecCC
Confidence 36799999999999999999999999999998652110000 011 01112333 457899999999955
Q ss_pred hhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeE
Q 007040 230 DETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCA 277 (620)
Q Consensus 230 ~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAa 277 (620)
. +...+ ......+++++++|..--| +-.++.|.+.+-..++.++.
T Consensus 84 ~-~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~ 128 (313)
T PRK06249 84 A-NALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGL 128 (313)
T ss_pred C-hHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEe
Confidence 2 33333 2333446788888887665 34566677777665665543
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0023 Score=64.09 Aligned_cols=62 Identities=16% Similarity=0.211 Sum_probs=48.3
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHh
Q 007040 163 LVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECL 241 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L 241 (620)
++++|||- |.||+-++..++..|+.|+ +++||+|++|+|.. .+..++.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~--------------------------~~~~DlVilavPv~-~~~~~i~---- 49 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY--------------------------IKKADHAFLSVPID-AALNYIE---- 49 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE--------------------------ECCCCEEEEeCCHH-HHHHHHH----
Confidence 47999988 9999999999999999985 36899999999955 3333332
Q ss_pred hccCCCcEEEEcCCChh
Q 007040 242 QHIKPGAFLVNTGSSQL 258 (620)
Q Consensus 242 ~~MK~gAiLINvgRG~v 258 (620)
.+. .++++++.-+.
T Consensus 50 -~~~--~~v~Dv~SvK~ 63 (197)
T PRK06444 50 -SYD--NNFVEISSVKW 63 (197)
T ss_pred -HhC--CeEEeccccCH
Confidence 232 37999998654
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0021 Score=75.96 Aligned_cols=116 Identities=9% Similarity=-0.000 Sum_probs=83.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc------------------------ccCCceecCCHHhhhcC
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT------------------------FPSAARRMDTLNDLLAA 218 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~------------------------~~~g~~~~~sL~eLL~~ 218 (620)
++|+|||.|.||..||..+...|++|+.||++....... ....+....+++ .+++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 579999999999999999999999999999886432200 001122344565 5689
Q ss_pred CcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCC
Q 007040 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE 282 (620)
Q Consensus 219 sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E 282 (620)
||+|+=++|..-+.+.-+-.+.=..++|+++|....++ ++...|.+.+.. .-..+++-.|.
T Consensus 415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~-p~r~ig~Hff~ 475 (737)
T TIGR02441 415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSA--LPIKDIAAVSSR-PEKVIGMHYFS 475 (737)
T ss_pred CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCC-ccceEEEeccC
Confidence 99999999999998887777777889999988744333 455566666543 33445666664
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00088 Score=74.03 Aligned_cols=79 Identities=14% Similarity=0.166 Sum_probs=58.3
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCccccC-C---ceecCCHHhhhcCCcEEEEcccCChhhH
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPS-A---ARRMDTLNDLLAASDVISLHCAVTDETI 233 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~~~-g---~~~~~sL~eLL~~sDvVil~lPlT~~T~ 233 (620)
.+.|+++.|||.|.||+.+|+.|...|. +|++++|+.......... + ....+++.+++.++|+||+|.+.. .
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~---~ 254 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVL---E 254 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCC---C
Confidence 5789999999999999999999999996 799999986443311111 1 123356678899999999999854 2
Q ss_pred hhcCHHH
Q 007040 234 QIINAEC 240 (620)
Q Consensus 234 ~lI~~~~ 240 (620)
.+|..+.
T Consensus 255 ~vi~~~~ 261 (414)
T PRK13940 255 YIVTCKY 261 (414)
T ss_pred eeECHHH
Confidence 3455443
|
|
| >PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0024 Score=67.77 Aligned_cols=78 Identities=19% Similarity=0.321 Sum_probs=64.3
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhC----CCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhH
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSF----KMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI 233 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~Lkaf----G~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~ 233 (620)
.+.|+++.|||-+. +|+++|.+|... +++|..+.... .+|.+..++||+|+.++.-.
T Consensus 154 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~~l~~~~~~ADIvIsAvGkp---- 215 (297)
T PRK14167 154 DTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT--------------DDLAAKTRRADIVVAAAGVP---- 215 (297)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCc----
Confidence 48999999999986 599999999865 89999886432 36889999999999988744
Q ss_pred hhcCHHHhhccCCCcEEEEcCCCh
Q 007040 234 QIINAECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgRG~ 257 (620)
++|..+ ++|+|+++||+|--.
T Consensus 216 ~~i~~~---~ik~gaiVIDvGin~ 236 (297)
T PRK14167 216 ELIDGS---MLSEGATVIDVGINR 236 (297)
T ss_pred CccCHH---HcCCCCEEEEccccc
Confidence 578764 478999999999654
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0013 Score=70.11 Aligned_cols=89 Identities=13% Similarity=0.200 Sum_probs=66.2
Q ss_pred cCcEEEEEeCChhhHHHHHHHh-hCCC-EEEEECCCCCCCCccc-------cCCceecCCHHhhhcCCcEEEEcccCChh
Q 007040 161 RGLVLGIVGRSASARALATRSL-SFKM-SVLYFDVPEGKGKVTF-------PSAARRMDTLNDLLAASDVISLHCAVTDE 231 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lk-afG~-~V~~~dr~~~~~~~~~-------~~g~~~~~sL~eLL~~sDvVil~lPlT~~ 231 (620)
..++++|||.|.+|+..+..+. ..+. +|.+|+|++....... ...+..+.+++++++++|+|+++.|..
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~-- 203 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK-- 203 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence 4678999999999999887765 4565 7999999875433111 111234678999999999999999966
Q ss_pred hHhhcCHHHhhccCCCcEEEEcCCC
Q 007040 232 TIQIINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 232 T~~lI~~~~L~~MK~gAiLINvgRG 256 (620)
..+|. ..+|+|+.++.+|.-
T Consensus 204 -~p~i~----~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 204 -TPVFS----EKLKKGVHINAVGSF 223 (325)
T ss_pred -CcchH----HhcCCCcEEEecCCC
Confidence 23554 556999999999863
|
|
| >PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0025 Score=67.60 Aligned_cols=78 Identities=22% Similarity=0.375 Sum_probs=64.4
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhC----CCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhH
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSF----KMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI 233 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~Lkaf----G~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~ 233 (620)
++.|+++.|||-+. +|+.+|.+|... +++|+.+.... .+|.+.+++||+|+.++.-.
T Consensus 158 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T--------------~~l~~~~~~ADIvVsAvGkp---- 219 (297)
T PRK14168 158 ETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS--------------KNLARHCQRADILIVAAGVP---- 219 (297)
T ss_pred CCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC--------------cCHHHHHhhCCEEEEecCCc----
Confidence 58999999999876 699999999876 78999886432 36889999999999999744
Q ss_pred hhcCHHHhhccCCCcEEEEcCCCh
Q 007040 234 QIINAECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgRG~ 257 (620)
++|..+. +|+|+++||+|--.
T Consensus 220 ~~i~~~~---ik~gavVIDvGin~ 240 (297)
T PRK14168 220 NLVKPEW---IKPGATVIDVGVNR 240 (297)
T ss_pred CccCHHH---cCCCCEEEecCCCc
Confidence 5787654 67999999999654
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0017 Score=69.31 Aligned_cols=88 Identities=17% Similarity=0.217 Sum_probs=66.0
Q ss_pred cCcEEEEEeCChhhHHHHHHHh-hCCC-EEEEECCCCCCCCccc-------cCCceecCCHHhhhcCCcEEEEcccCChh
Q 007040 161 RGLVLGIVGRSASARALATRSL-SFKM-SVLYFDVPEGKGKVTF-------PSAARRMDTLNDLLAASDVISLHCAVTDE 231 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lk-afG~-~V~~~dr~~~~~~~~~-------~~g~~~~~sL~eLL~~sDvVil~lPlT~~ 231 (620)
..++++|||.|.+|+..++.+. .++. +|.+|+|+........ ...+...++++++++.||+|+++.|.+.
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~- 206 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSET- 206 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCC-
Confidence 3568999999999999999997 4775 7999999875433111 1112335789999999999999998653
Q ss_pred hHhhcCHHHhhccCCCcEEEEcC
Q 007040 232 TIQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 232 T~~lI~~~~L~~MK~gAiLINvg 254 (620)
.+|..+ .+++|+.++.+|
T Consensus 207 --p~i~~~---~l~~g~~i~~vg 224 (326)
T TIGR02992 207 --PILHAE---WLEPGQHVTAMG 224 (326)
T ss_pred --cEecHH---HcCCCcEEEeeC
Confidence 566654 468999888776
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0034 Score=73.68 Aligned_cols=116 Identities=10% Similarity=-0.019 Sum_probs=81.9
Q ss_pred cEEEEEeCChhhHHHHHHHh-hCCCEEEEECCCCCCCCcc-----------c-------------cCCceecCCHHhhhc
Q 007040 163 LVLGIVGRSASARALATRSL-SFKMSVLYFDVPEGKGKVT-----------F-------------PSAARRMDTLNDLLA 217 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lk-afG~~V~~~dr~~~~~~~~-----------~-------------~~g~~~~~sL~eLL~ 217 (620)
++|+|||.|.||..+|..+. ..|++|+.||++....... . ...+....+++ .++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYR-GFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChH-Hhc
Confidence 57999999999999999987 5899999999986421100 0 01122345664 578
Q ss_pred CCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCC
Q 007040 218 ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE 282 (620)
Q Consensus 218 ~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E 282 (620)
.||+|+=++|...+.+.-+-.+.=..++++++|....++ +....|.+++. ..-..+++--|.
T Consensus 384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~-~p~r~~g~Hffn 445 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSS--LPIGQIAAAAS-RPENVIGLHYFS 445 (699)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHhcC-CcccEEEEecCC
Confidence 999999999999998887777777889999888765544 44455556653 233345665554
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0049 Score=72.53 Aligned_cols=116 Identities=14% Similarity=0.010 Sum_probs=83.5
Q ss_pred cEEEEEeCChhhHHHHHHHh-hCCCEEEEECCCCCCCCcc------------------------ccCCceecCCHHhhhc
Q 007040 163 LVLGIVGRSASARALATRSL-SFKMSVLYFDVPEGKGKVT------------------------FPSAARRMDTLNDLLA 217 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lk-afG~~V~~~dr~~~~~~~~------------------------~~~g~~~~~sL~eLL~ 217 (620)
++|+|||.|.||..||..+. ..|++|..||++....... ....+....++ +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 67999999999999999988 7899999999975321100 00112234556 4578
Q ss_pred CCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCC
Q 007040 218 ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE 282 (620)
Q Consensus 218 ~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E 282 (620)
.||+|+=++|...+.+.-+-++.=+.++|+++|....++ +....|.+.+.. .-..+++--|.
T Consensus 389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~ig~Hff~ 450 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS--LPIGQIAAAAAR-PEQVIGLHYFS 450 (708)
T ss_pred cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhcCc-ccceEEEecCC
Confidence 999999999999998887777777889999999866554 455556666542 33445665554
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0077 Score=64.22 Aligned_cols=117 Identities=16% Similarity=0.064 Sum_probs=81.0
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-----------ccccCC-------------ceecCCHHhhhc
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-----------VTFPSA-------------ARRMDTLNDLLA 217 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~-----------~~~~~g-------------~~~~~sL~eLL~ 217 (620)
-++|||||.|.||..+|..+..-|+.|..+|++..... .....+ +....++. .++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~ 81 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK 81 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence 46899999999999999999997799999999843211 000000 11122333 678
Q ss_pred CCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCC
Q 007040 218 ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE 282 (620)
Q Consensus 218 ~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E 282 (620)
.||+|+=.+|..-+.++-+=++.=...+|+++|=.-.++ +.-.+|.+++ ...-..+++=.|-
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs--l~it~ia~~~-~rper~iG~HFfN 143 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS--LSITELAEAL-KRPERFIGLHFFN 143 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC--CCHHHHHHHh-CCchhEEEEeccC
Confidence 999999999999998887767777778999998644333 4455666776 4444445554444
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.00095 Score=74.98 Aligned_cols=71 Identities=20% Similarity=0.222 Sum_probs=51.2
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc---CCceecCCHHhhhcCCcEEEEcccCC
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP---SAARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~---~g~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
..+.+++++|+|.|.||++++..|...|++|++++++......... .......++.+ +..+|+|++|+|..
T Consensus 328 ~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~-l~~~DiVInatP~g 401 (477)
T PRK09310 328 IPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPE-LHRIDIIINCLPPS 401 (477)
T ss_pred CCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcc-cCCCCEEEEcCCCC
Confidence 3578999999999999999999999999999999987543221111 01111122322 56899999999975
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0037 Score=73.58 Aligned_cols=115 Identities=13% Similarity=0.107 Sum_probs=81.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-----------c-------------cCCceecCCHHhhhcC
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT-----------F-------------PSAARRMDTLNDLLAA 218 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~-----------~-------------~~g~~~~~sL~eLL~~ 218 (620)
++|+|||.|.||..||..+...|++|+.||++....... . ...+....+++ .+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYA-GFDN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-HhcC
Confidence 579999999999999999999999999999886432100 0 01122334553 4689
Q ss_pred CcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecC
Q 007040 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGA 281 (620)
Q Consensus 219 sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~ 281 (620)
||+|+=++|..-+.+.-+-.+.=+.++|+++|-...++ ++..+|...+.. .-..+++=.|
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~--l~i~~ia~~~~~-p~r~ig~Hff 452 (714)
T TIGR02437 393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTST--ISISLLAKALKR-PENFCGMHFF 452 (714)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCC-cccEEEEecC
Confidence 99999999999998887777777889999998765554 455556666542 3333444334
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.002 Score=68.86 Aligned_cols=87 Identities=18% Similarity=0.308 Sum_probs=64.6
Q ss_pred CcEEEEEeCChhhHHHHHHHhh-CCC-EEEEECCCCCCCCccc-------cCCceecCCHHhhhcCCcEEEEcccCChhh
Q 007040 162 GLVLGIVGRSASARALATRSLS-FKM-SVLYFDVPEGKGKVTF-------PSAARRMDTLNDLLAASDVISLHCAVTDET 232 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lka-fG~-~V~~~dr~~~~~~~~~-------~~g~~~~~sL~eLL~~sDvVil~lPlT~~T 232 (620)
-++|||||.|.+|+..++.+.. .+. .|.+||++........ ...+..+.+++++++ +|+|++++|.+
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~--- 204 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR--- 204 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC---
Confidence 4579999999999999998874 455 6888999874433111 111334678999997 99999999965
Q ss_pred HhhcCHHHhhccCCCcEEEEcCC
Q 007040 233 IQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 233 ~~lI~~~~L~~MK~gAiLINvgR 255 (620)
..+|..+ .+|+|+.+..+|.
T Consensus 205 ~P~~~~~---~l~~g~hV~~iGs 224 (326)
T PRK06046 205 KPVVKAE---WIKEGTHINAIGA 224 (326)
T ss_pred CcEecHH---HcCCCCEEEecCC
Confidence 3577665 4589999988884
|
|
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0014 Score=69.77 Aligned_cols=91 Identities=19% Similarity=0.296 Sum_probs=57.6
Q ss_pred cEEEEEeCChhhHHHHHHHhh-CCC-EEEEECCCCCCCC------ccccCCceecCCHHhhhcCCcEEEEcccCChhhHh
Q 007040 163 LVLGIVGRSASARALATRSLS-FKM-SVLYFDVPEGKGK------VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQ 234 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lka-fG~-~V~~~dr~~~~~~------~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~ 234 (620)
+++||||.|..|+.-++.+.. ++. +|.+|+|++...+ ..+...+..+++++++++.||+|+.+.|.+..+ -
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~-P 207 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA-P 207 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-E
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-c
Confidence 579999999999999998864 566 8999999874333 111223456789999999999999999876433 5
Q ss_pred hcCHHHhhccCCCcEEEEcCCCh
Q 007040 235 IINAECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 235 lI~~~~L~~MK~gAiLINvgRG~ 257 (620)
+|..+ .++||+.++.+|...
T Consensus 208 ~~~~~---~l~~g~hi~~iGs~~ 227 (313)
T PF02423_consen 208 VFDAE---WLKPGTHINAIGSYT 227 (313)
T ss_dssp SB-GG---GS-TT-EEEE-S-SS
T ss_pred cccHH---HcCCCcEEEEecCCC
Confidence 77654 678999999998753
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0025 Score=57.89 Aligned_cols=90 Identities=17% Similarity=0.159 Sum_probs=55.2
Q ss_pred EEEEEe-CChhhHHHHHHHhhC-CCEEEEE-CCCCCCCCccccCC--c--eecCCH--Hhh-hcCCcEEEEcccCChhhH
Q 007040 164 VLGIVG-RSASARALATRSLSF-KMSVLYF-DVPEGKGKVTFPSA--A--RRMDTL--NDL-LAASDVISLHCAVTDETI 233 (620)
Q Consensus 164 tVGIIG-lG~IG~~vA~~Lkaf-G~~V~~~-dr~~~~~~~~~~~g--~--~~~~sL--~eL-L~~sDvVil~lPlT~~T~ 233 (620)
++|||| .|.+|..++..+... ++++.++ ++...........+ . .....+ +++ ..++|+|++|+|.....
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~- 79 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSK- 79 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHH-
Confidence 489999 599999999999874 8887777 43322222111000 1 000111 111 25899999999976433
Q ss_pred hhcCHHHhhccCCCcEEEEcCC
Q 007040 234 QIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgR 255 (620)
..+. ..+..+++|.++|+++.
T Consensus 80 ~~~~-~~~~~~~~g~~viD~s~ 100 (122)
T smart00859 80 EIAP-LLPKAAEAGVKVIDLSS 100 (122)
T ss_pred HHHH-HHHhhhcCCCEEEECCc
Confidence 3222 23456799999999984
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0029 Score=68.25 Aligned_cols=81 Identities=12% Similarity=0.060 Sum_probs=55.4
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhc
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII 236 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI 236 (620)
..+.|+++.|||.|.||+-+|+.|...|. +|++.+|+..... +.. ... ..-+++..+||||.+.-.|.....++
T Consensus 170 ~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~--~~~--~~~-~~~~~~~~~DvVIs~t~~Tas~~p~i 244 (338)
T PRK00676 170 QKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLP--YRT--VVR-EELSFQDPYDVIFFGSSESAYAFPHL 244 (338)
T ss_pred CCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccc--hhh--hhh-hhhhcccCCCEEEEcCCcCCCCCcee
Confidence 35899999999999999999999999996 6999999874311 110 000 11145678999998743333334455
Q ss_pred CHHHhhc
Q 007040 237 NAECLQH 243 (620)
Q Consensus 237 ~~~~L~~ 243 (620)
..+.+..
T Consensus 245 ~~~~~~~ 251 (338)
T PRK00676 245 SWESLAD 251 (338)
T ss_pred eHHHHhh
Confidence 6555543
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.001 Score=59.36 Aligned_cols=88 Identities=15% Similarity=0.083 Sum_probs=57.6
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
.+.|+++.|||.|.+|..-++.|...|.+|+++++.....+... ......+++.+..+|+|+.+.+... ++.
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~~~i---~~~~~~~~~~l~~~~lV~~at~d~~-----~n~ 75 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSEGLI---QLIRREFEEDLDGADLVFAATDDPE-----LNE 75 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHHTSC---EEEESS-GGGCTTESEEEE-SS-HH-----HHH
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhhhHH---HHHhhhHHHHHhhheEEEecCCCHH-----HHH
Confidence 58999999999999999999999999999999999841001001 0112345566888999998776432 334
Q ss_pred HHhhccCCCcEEEEcC
Q 007040 239 ECLQHIKPGAFLVNTG 254 (620)
Q Consensus 239 ~~L~~MK~gAiLINvg 254 (620)
......+.--++||+.
T Consensus 76 ~i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 76 AIYADARARGILVNVV 91 (103)
T ss_dssp HHHHHHHHTTSEEEET
T ss_pred HHHHHHhhCCEEEEEC
Confidence 4444555556777764
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0046 Score=65.64 Aligned_cols=116 Identities=17% Similarity=0.230 Sum_probs=73.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC-cc-----------ccCCceecCCHHhhhcCCcEEEEcccCC
Q 007040 163 LVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK-VT-----------FPSAARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~-~~-----------~~~g~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
++|+|||.|.||..+|..+...|. +|+.+|....... .. .........++++ +++||+|+++++..
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p 80 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP 80 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence 579999999999999999988776 8999998543211 00 0011222356766 78999999999832
Q ss_pred h-----------hhHhhcC--HHHhhccCCCcEEEEcCCChhhcHHHHHHH--HHcCCcceeE--ee
Q 007040 230 D-----------ETIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCAVKQL--LIDGTLAGCA--LD 279 (620)
Q Consensus 230 ~-----------~T~~lI~--~~~L~~MK~gAiLINvgRG~vVDe~AL~~A--L~~G~I~GAa--LD 279 (620)
. .+..++- .+.+....|++++|+++-.-=+-...+.+. +...++.|.+ ||
T Consensus 81 ~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld 147 (305)
T TIGR01763 81 RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD 147 (305)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence 1 1222221 123444568899999987544444445444 4444555554 67
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0072 Score=64.52 Aligned_cols=119 Identities=18% Similarity=0.224 Sum_probs=73.3
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCC-CEEEEECCCCCCCC--------cc--cc--CCceecCCHHhhhcCCcEEEEcc
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFK-MSVLYFDVPEGKGK--------VT--FP--SAARRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG-~~V~~~dr~~~~~~--------~~--~~--~g~~~~~sL~eLL~~sDvVil~l 226 (620)
+..++|+|||.|.||..+|..+...| .+|..||.+..... .. .. ..+....+++ .+++||+|+++.
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 35678999999999999999998878 69999998763321 00 00 0112234666 779999999999
Q ss_pred --cCChh-hH--------hhc--CHHHhhccCCCcEEEEcCCChhhcHHHHHHHHH--cCCcceeE--ee
Q 007040 227 --AVTDE-TI--------QII--NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI--DGTLAGCA--LD 279 (620)
Q Consensus 227 --PlT~~-T~--------~lI--~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~--~G~I~GAa--LD 279 (620)
|..+. ++ .++ -.+.+....|.+++||++-..-+-...+.+... ..++.|.+ ||
T Consensus 82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~ld 151 (319)
T PTZ00117 82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLD 151 (319)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHH
Confidence 44431 11 111 113445557899999986544333334444321 24555444 66
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0019 Score=69.76 Aligned_cols=97 Identities=13% Similarity=0.193 Sum_probs=70.1
Q ss_pred eecCcEEEEEeC-ChhhHHHHHHHhh-CCC-EEEEECCCCCCCCccc-cCCceecCCHHhhhcCCcEEEEcccCChhhHh
Q 007040 159 RCRGLVLGIVGR-SASARALATRSLS-FKM-SVLYFDVPEGKGKVTF-PSAARRMDTLNDLLAASDVISLHCAVTDETIQ 234 (620)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~Lka-fG~-~V~~~dr~~~~~~~~~-~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~ 234 (620)
.+.|++|.|+|. |.||+.+|+.|.. .|. +|+.++|+........ ........++++.+.++|+|+.+.-.. ..
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~---~~ 228 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMP---KG 228 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCC---cC
Confidence 578999999998 8999999999974 564 8999998754332111 111122346889999999988766533 23
Q ss_pred -hcCHHHhhccCCCcEEEEcCCChhhcH
Q 007040 235 -IINAECLQHIKPGAFLVNTGSSQLLDD 261 (620)
Q Consensus 235 -lI~~~~L~~MK~gAiLINvgRG~vVDe 261 (620)
+|+.+. ++++.++|++|+..=||.
T Consensus 229 ~~I~~~~---l~~~~~viDiAvPRDVd~ 253 (340)
T PRK14982 229 VEIDPET---LKKPCLMIDGGYPKNLDT 253 (340)
T ss_pred CcCCHHH---hCCCeEEEEecCCCCCCc
Confidence 477764 479999999999876664
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0019 Score=71.26 Aligned_cols=81 Identities=14% Similarity=0.163 Sum_probs=60.2
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCc---cccCCceecCCHHhhhcCCcEEEEcccCChhhHh
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKV---TFPSAARRMDTLNDLLAASDVISLHCAVTDETIQ 234 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~---~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~ 234 (620)
+|.++++.|||+|-||.-+|+.|...|. +|++.+|+...... .+...+...+.+.+.+..+|+||.+.... ..
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~---~~ 251 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAP---HP 251 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCC---cc
Confidence 4899999999999999999999999995 89999999755431 12222334567788899999999886533 34
Q ss_pred hcCHHHhh
Q 007040 235 IINAECLQ 242 (620)
Q Consensus 235 lI~~~~L~ 242 (620)
+|..+.+.
T Consensus 252 ii~~~~ve 259 (414)
T COG0373 252 IITREMVE 259 (414)
T ss_pred ccCHHHHH
Confidence 55554443
|
|
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.018 Score=58.76 Aligned_cols=107 Identities=16% Similarity=0.112 Sum_probs=67.7
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEE-CCCCC-------CCCc---ccc-CC-------ceecCCHHhh-hcC
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYF-DVPEG-------KGKV---TFP-SA-------ARRMDTLNDL-LAA 218 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~-dr~~~-------~~~~---~~~-~g-------~~~~~sL~eL-L~~ 218 (620)
++.|++|.|.|+|++|+.+|+.|..+|++|+++ |.... .... ... .+ .... +.+++ -.+
T Consensus 28 ~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~i~~~~ 106 (227)
T cd01076 28 GLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEELLELD 106 (227)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCccceeec
Confidence 478999999999999999999999999999955 44210 0000 000 00 1111 22222 236
Q ss_pred CcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 219 sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
|||++-|.+. +.|+.+....++ -.+++-.+-+++- ....+.|.++.|.
T Consensus 107 ~Dvlip~a~~-----~~i~~~~~~~l~-a~~I~egAN~~~t--~~a~~~L~~rGi~ 154 (227)
T cd01076 107 CDILIPAALE-----NQITADNADRIK-AKIIVEAANGPTT--PEADEILHERGVL 154 (227)
T ss_pred ccEEEecCcc-----CccCHHHHhhce-eeEEEeCCCCCCC--HHHHHHHHHCCCE
Confidence 7888877653 477777777776 5566666667663 4455777776665
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0017 Score=68.16 Aligned_cols=70 Identities=20% Similarity=0.194 Sum_probs=52.1
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCccc-------cC-CceecCCHHhhhcCCcEEEEcccCC
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTF-------PS-AARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~-------~~-g~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
+.++++.|||.|.+|++++..|...|+ +|+++||+....+... .. ......++.+.+..+|+||++.|..
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~G 203 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTG 203 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCC
Confidence 568899999999999999999999998 8999999864333111 00 1112234556778899999999865
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0035 Score=65.45 Aligned_cols=103 Identities=14% Similarity=0.098 Sum_probs=67.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhC---CCEEEE-ECCCCCCCCccccCCceecCCHHhh-hcCCcEEEEcccCChhhHhhcC
Q 007040 163 LVLGIVGRSASARALATRSLSF---KMSVLY-FDVPEGKGKVTFPSAARRMDTLNDL-LAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf---G~~V~~-~dr~~~~~~~~~~~g~~~~~sL~eL-L~~sDvVil~lPlT~~T~~lI~ 237 (620)
++|||||+|.||+.+++.+..- ++++.+ |++...... .+...+..+.+++++ ....|+|+=|.... .+-
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~-~~~~~~~~~~~l~~ll~~~~DlVVE~A~~~-----av~ 76 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPP-ALAGRVALLDGLPGLLAWRPDLVVEAAGQQ-----AIA 76 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHH-HhhccCcccCCHHHHhhcCCCEEEECCCHH-----HHH
Confidence 5799999999999999998753 365544 555542222 222234567789997 57899999888733 221
Q ss_pred HHHhhccCCCcEEEEcCCChhhc---HHHHHHHHHcC
Q 007040 238 AECLQHIKPGAFLVNTGSSQLLD---DCAVKQLLIDG 271 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~vVD---e~AL~~AL~~G 271 (620)
+--..-++.|.-+|=.|-|.+.| .+.|.++.+.+
T Consensus 77 e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~ 113 (267)
T PRK13301 77 EHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAG 113 (267)
T ss_pred HHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhC
Confidence 22233455677777788888887 44556555543
|
|
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0039 Score=66.54 Aligned_cols=88 Identities=18% Similarity=0.189 Sum_probs=66.7
Q ss_pred CcEEEEEeCChhhHHHHHHHhh-CCC-EEEEECCCCCCCCccc------cCCceecCCHHhhhcCCcEEEEcccCChhhH
Q 007040 162 GLVLGIVGRSASARALATRSLS-FKM-SVLYFDVPEGKGKVTF------PSAARRMDTLNDLLAASDVISLHCAVTDETI 233 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lka-fG~-~V~~~dr~~~~~~~~~------~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~ 233 (620)
-++++|||.|..|+..++.+.. +.. +|.+|+|++....... ...+..+++.+++++.||||+.+.|.+ .
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~---~ 204 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSR---E 204 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCC---C
Confidence 4689999999999999988774 333 8999999975543111 112334678999999999999998754 4
Q ss_pred hhcCHHHhhccCCCcEEEEcCC
Q 007040 234 QIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgR 255 (620)
.+|..+ .+|||+.++.+|.
T Consensus 205 P~~~~~---~l~~G~hi~~iGs 223 (315)
T PRK06823 205 PLLQAE---DIQPGTHITAVGA 223 (315)
T ss_pred ceeCHH---HcCCCcEEEecCC
Confidence 677665 5689999999985
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0051 Score=63.48 Aligned_cols=116 Identities=17% Similarity=0.274 Sum_probs=75.0
Q ss_pred EEEEeC-ChhhHHHHHHHhhCC----CEEEEECCCCCCCC----------ccc-cCCceecCCHHhhhcCCcEEEEcccC
Q 007040 165 LGIVGR-SASARALATRSLSFK----MSVLYFDVPEGKGK----------VTF-PSAARRMDTLNDLLAASDVISLHCAV 228 (620)
Q Consensus 165 VGIIGl-G~IG~~vA~~LkafG----~~V~~~dr~~~~~~----------~~~-~~g~~~~~sL~eLL~~sDvVil~lPl 228 (620)
|+|||. |.+|..+|..|...| .+|..||....... ... ...+....++.+.+++||+|+++.-.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 589999 999999999998777 69999998764333 001 11233345678899999999996522
Q ss_pred C-----------hhhHhhcC--HHHhhccCCCcEEEEcCCChhhcHHHHHHH--HHcCCcceeE-eec
Q 007040 229 T-----------DETIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCAVKQL--LIDGTLAGCA-LDG 280 (620)
Q Consensus 229 T-----------~~T~~lI~--~~~L~~MK~gAiLINvgRG~vVDe~AL~~A--L~~G~I~GAa-LDV 280 (620)
. ..+..++- .+.+....|.+++||++-.-=+-...+.+. +...++.|.+ ||.
T Consensus 81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~~ld~ 148 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGTLDP 148 (263)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEeecchH
Confidence 1 01222221 234455568999999964332333344444 3456788888 886
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0035 Score=67.08 Aligned_cols=88 Identities=16% Similarity=0.197 Sum_probs=63.5
Q ss_pred cCcEEEEEeCChhhHHHHHHHhh-CCC-EEEEECCCCCCCCccc-------cCCceecCCHHhhhcCCcEEEEcccCChh
Q 007040 161 RGLVLGIVGRSASARALATRSLS-FKM-SVLYFDVPEGKGKVTF-------PSAARRMDTLNDLLAASDVISLHCAVTDE 231 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lka-fG~-~V~~~dr~~~~~~~~~-------~~g~~~~~sL~eLL~~sDvVil~lPlT~~ 231 (620)
..++++|||.|.+|+..+..+.. .+. +|.+|+|+....+... ...+....++++++.++|+|+++.|..
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~-- 208 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE-- 208 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC--
Confidence 45789999999999999888874 564 8999999865433111 111234578999999999999999865
Q ss_pred hHhhcCHHHhhccCCCcEEEEcC
Q 007040 232 TIQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 232 T~~lI~~~~L~~MK~gAiLINvg 254 (620)
..+|..+. +++|+.++.++
T Consensus 209 -~p~i~~~~---l~~g~~v~~vg 227 (330)
T PRK08291 209 -EPILKAEW---LHPGLHVTAMG 227 (330)
T ss_pred -CcEecHHH---cCCCceEEeeC
Confidence 34666543 57887776654
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0096 Score=54.51 Aligned_cols=100 Identities=9% Similarity=0.091 Sum_probs=68.0
Q ss_pred cEEEEEe----CChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 163 LVLGIVG----RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 163 ktVGIIG----lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
++|+||| -+..|..+.+.|+..|++|+.+++..... .|...+.+|.|.=...|++++++|.. .+..++.
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-----~G~~~y~sl~e~p~~iDlavv~~~~~-~~~~~v~- 73 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-----LGIKCYPSLAEIPEPIDLAVVCVPPD-KVPEIVD- 73 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-----TTEE-BSSGGGCSST-SEEEE-S-HH-HHHHHHH-
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-----CcEEeeccccCCCCCCCEEEEEcCHH-HHHHHHH-
Confidence 5799999 78999999999999999999999877332 35666788998547899999999943 3344443
Q ss_pred HHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 239 ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 239 ~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
.+..+..+.+++..| ..++++.+.+++..+.
T Consensus 74 -~~~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 74 -EAAALGVKAVWLQPG----AESEELIEAAREAGIR 104 (116)
T ss_dssp -HHHHHT-SEEEE-TT----S--HHHHHHHHHTT-E
T ss_pred -HHHHcCCCEEEEEcc----hHHHHHHHHHHHcCCE
Confidence 234456788999888 6677788888877665
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.011 Score=61.17 Aligned_cols=65 Identities=17% Similarity=0.166 Sum_probs=47.8
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhC-CCEEEE-ECCCCCCCCccccCCceecCCHHhhhcCCcEEEEccc
Q 007040 163 LVLGIVGR-SASARALATRSLSF-KMSVLY-FDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~Lkaf-G~~V~~-~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lP 227 (620)
.+|+|+|+ |.||+.+++.+... ++++.+ +|+...........++....++++++..+|+|+.++|
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~ 69 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT 69 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC
Confidence 47999998 99999999998864 788665 7776543321112234455789999989999998886
|
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0046 Score=66.32 Aligned_cols=86 Identities=15% Similarity=0.064 Sum_probs=60.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEEEE-ECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHH
Q 007040 163 LVLGIVGRSASARALATRSLSF-KMSVLY-FDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-G~~V~~-~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~ 240 (620)
.+|||||+|+||+.+++.+... ++++.+ ||++...... ...++....+.++++.+.|+|++|+|.... -...
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~-~~~~v~~~~d~~e~l~~iDVViIctPs~th-----~~~~ 77 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD-TETPVYAVADDEKHLDDVDVLILCMGSATD-----IPEQ 77 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh-hcCCccccCCHHHhccCCCEEEEcCCCccC-----HHHH
Confidence 5799999999999999999865 898876 6887422111 112333445677888999999999996522 1334
Q ss_pred hhccCCCcEEEEcC
Q 007040 241 LQHIKPGAFLVNTG 254 (620)
Q Consensus 241 L~~MK~gAiLINvg 254 (620)
...|+.|.-+|++.
T Consensus 78 ~~~L~aG~NVV~s~ 91 (324)
T TIGR01921 78 APYFAQFANTVDSF 91 (324)
T ss_pred HHHHHcCCCEEECC
Confidence 45577777888874
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.044 Score=55.63 Aligned_cols=107 Identities=15% Similarity=0.138 Sum_probs=68.2
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEE-ECCCC----------CCCCccccC-Ccee-----cCCHHhhh-cCCc
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLY-FDVPE----------GKGKVTFPS-AARR-----MDTLNDLL-AASD 220 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~-~dr~~----------~~~~~~~~~-g~~~-----~~sL~eLL-~~sD 220 (620)
++.|++|.|.|+|++|+.+|+.|...|.+|++ .|.+. ......... +... ..+-++++ .+||
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D 99 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVD 99 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceecccc
Confidence 47899999999999999999999999996655 55544 100000000 0000 00112232 3689
Q ss_pred EEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCc
Q 007040 221 VISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTL 273 (620)
Q Consensus 221 vVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I 273 (620)
+++-|.+.+ .|+.+....++ -.+++-.+-+++-+ .-.+.|.+..+
T Consensus 100 VlipaA~~~-----~i~~~~a~~l~-a~~V~e~AN~p~t~--~a~~~L~~~Gi 144 (217)
T cd05211 100 IFAPCALGN-----VIDLENAKKLK-AKVVAEGANNPTTD--EALRILHERGI 144 (217)
T ss_pred EEeeccccC-----ccChhhHhhcC-ccEEEeCCCCCCCH--HHHHHHHHCCc
Confidence 999887644 78888778786 55777777777765 33455655544
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.021 Score=59.39 Aligned_cols=155 Identities=14% Similarity=0.080 Sum_probs=92.2
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEE-CCCC-------CC--------------CC--ccccC---CceecCC
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYF-DVPE-------GK--------------GK--VTFPS---AARRMDT 211 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~-dr~~-------~~--------------~~--~~~~~---g~~~~~s 211 (620)
++.|++|.|.|+|++|+.+|+.|..+|++|+++ |.+. -. .. ..+.. +.... +
T Consensus 35 ~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~-~ 113 (254)
T cd05313 35 TLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF-E 113 (254)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe-C
Confidence 479999999999999999999999999999954 4211 00 00 00100 12222 3
Q ss_pred HHhh-hcCCcEEEEcccCChhhHhhcCHHHhhccC--CCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCC--CCC
Q 007040 212 LNDL-LAASDVISLHCAVTDETIQIINAECLQHIK--PGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG--PQW 286 (620)
Q Consensus 212 L~eL-L~~sDvVil~lPlT~~T~~lI~~~~L~~MK--~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~--P~~ 286 (620)
.+++ -..|||++-|. +.+.|+.+....++ +-.+++-.+-+++-. +-.+.|.++.|. .+=|+.-+ -..
T Consensus 114 ~~~~~~~~~DIliPcA-----l~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI~-vvPD~laNaGGVi 185 (254)
T cd05313 114 GKKPWEVPCDIAFPCA-----TQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGVL-FAPGKAANAGGVA 185 (254)
T ss_pred CcchhcCCCcEEEecc-----ccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCcE-EECchhhcCCCee
Confidence 3333 34689998664 66799998888884 456777778888755 345677777665 33344322 000
Q ss_pred CCccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHH
Q 007040 287 MEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFF 326 (620)
Q Consensus 287 ~~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L 326 (620)
. +-+--..| .-|..|.-++...++.+.+.+...+.+
T Consensus 186 v-s~~E~~qn---~~~~~w~~e~V~~~l~~~m~~~~~~v~ 221 (254)
T cd05313 186 V-SGLEMSQN---SQRLSWTAEEVDAKLKDIMKNIHDACA 221 (254)
T ss_pred e-eHHHhhcc---cccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000111 223455556677777766666655544
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t |
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0065 Score=64.46 Aligned_cols=88 Identities=16% Similarity=0.146 Sum_probs=65.6
Q ss_pred CcEEEEEeCChhhHHHHHHHhh-CCC-EEEEECCCCCCCCcc-------ccCCceecCCHHhhhcCCcEEEEcccCChhh
Q 007040 162 GLVLGIVGRSASARALATRSLS-FKM-SVLYFDVPEGKGKVT-------FPSAARRMDTLNDLLAASDVISLHCAVTDET 232 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lka-fG~-~V~~~dr~~~~~~~~-------~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T 232 (620)
-+++||||.|..|+.-++.+.. +.. +|.+|+|++...... ....+..+.+++++++.||||+.+.|.+
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~--- 193 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSD--- 193 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC---
Confidence 4679999999999988888775 444 899999997553311 1112345678999999999999998855
Q ss_pred HhhcCHHHhhccCCCcEEEEcCC
Q 007040 233 IQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 233 ~~lI~~~~L~~MK~gAiLINvgR 255 (620)
..+|..+ .+|||+.++-+|.
T Consensus 194 ~P~~~~~---~l~pg~hV~aiGs 213 (301)
T PRK06407 194 TPIFNRK---YLGDEYHVNLAGS 213 (301)
T ss_pred CcEecHH---HcCCCceEEecCC
Confidence 4677665 4678988777765
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0049 Score=67.62 Aligned_cols=67 Identities=15% Similarity=0.095 Sum_probs=50.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC-CEEEEECCCCCCCCcccc----------CCceecCCHHhhhcCCcEEEEcccCC
Q 007040 163 LVLGIVGRSASARALATRSLSFK-MSVLYFDVPEGKGKVTFP----------SAARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG-~~V~~~dr~~~~~~~~~~----------~g~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
++|.|||.|.||+.+|..|.+.| .+|++.||+......... ..+.....+.+++++.|+|+.++|..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~ 79 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPF 79 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCch
Confidence 57999999999999999999998 899999999643331111 11123345778888889999998854
|
|
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0059 Score=66.82 Aligned_cols=93 Identities=17% Similarity=0.368 Sum_probs=69.0
Q ss_pred CcEEEEEeCChhhHHHHHHHhh-CC-C-EEEEECCCCCCCCc-------cccC--CceecCCHHhhhcCCcEEEEcccCC
Q 007040 162 GLVLGIVGRSASARALATRSLS-FK-M-SVLYFDVPEGKGKV-------TFPS--AARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lka-fG-~-~V~~~dr~~~~~~~-------~~~~--g~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
-+++||||.|..|+..++.+.. +. . +|.+|+|++..... .+.. .+..+++.+++++.||||+.+.+.+
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 4679999999999999998876 42 4 89999999754331 1111 1445688999999999999999865
Q ss_pred h---hhHhhcCHHHhhccCCCcEEEEcCCCh
Q 007040 230 D---ETIQIINAECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 230 ~---~T~~lI~~~~L~~MK~gAiLINvgRG~ 257 (620)
. .+..+|..+ .+|||+.++.+|.-+
T Consensus 235 ~~~~s~~Pv~~~~---~lkpG~hv~~ig~~e 262 (379)
T PRK06199 235 TGDPSTYPYVKRE---WVKPGAFLLMPAACR 262 (379)
T ss_pred CCCCCcCcEecHH---HcCCCcEEecCCccc
Confidence 3 345677765 567999888777643
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0029 Score=56.59 Aligned_cols=106 Identities=17% Similarity=0.163 Sum_probs=67.2
Q ss_pred EEEEEeCChhhHHHHHHHhhC--CCEEE-EECCCCCCCCcc-ccCCceecCCHHhhhc--CCcEEEEcccCChhhHhhcC
Q 007040 164 VLGIVGRSASARALATRSLSF--KMSVL-YFDVPEGKGKVT-FPSAARRMDTLNDLLA--ASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~Lkaf--G~~V~-~~dr~~~~~~~~-~~~g~~~~~sL~eLL~--~sDvVil~lPlT~~T~~lI~ 237 (620)
++||||+|.+|+.....+... +++|. ++|+++...... ...+...+.++++++. +.|+|+++.|.... .-+-
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h--~~~~ 79 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSH--AEIA 79 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGH--HHHH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcch--HHHH
Confidence 699999999999999888766 56765 678876433311 1234557789999998 78999999996432 2222
Q ss_pred HHHhhccCCCcEEEEc-CCChhhcHHHHHHHHHcCCc
Q 007040 238 AECLQHIKPGAFLVNT-GSSQLLDDCAVKQLLIDGTL 273 (620)
Q Consensus 238 ~~~L~~MK~gAiLINv-gRG~vVDe~AL~~AL~~G~I 273 (620)
...++.=+ .+++.- ---.+-+..+|+++.++...
T Consensus 80 ~~~l~~g~--~v~~EKP~~~~~~~~~~l~~~a~~~~~ 114 (120)
T PF01408_consen 80 KKALEAGK--HVLVEKPLALTLEEAEELVEAAKEKGV 114 (120)
T ss_dssp HHHHHTTS--EEEEESSSSSSHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCC--EEEEEcCCcCCHHHHHHHHHHHHHhCC
Confidence 22333222 445443 12244555667766665443
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.03 Score=60.49 Aligned_cols=156 Identities=17% Similarity=0.170 Sum_probs=111.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-----cCCceecCCHHhh---hcCCcEEEEcccCChhhHh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF-----PSAARRMDTLNDL---LAASDVISLHCAVTDETIQ 234 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~-----~~g~~~~~sL~eL---L~~sDvVil~lPlT~~T~~ 234 (620)
..||+||++-||+.++-.....|+.|.+|+|.....+... ...+....+++++ +..--+|++.+-.......
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~ 86 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ 86 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence 4599999999999999999999999999999876544221 1123334567776 5566788888776655555
Q ss_pred hcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCC-CCCCCccccCCCcEEEcCCCCCCcHHHHHH
Q 007040 235 IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWME 313 (620)
Q Consensus 235 lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~-P~~~~spL~~~pNVIlTPHiAg~T~ea~~~ 313 (620)
+| .++...|-+|-++|+-|-...-|...-.+.|....|...+.-|.-. +-...-| - + +-|.+.++|..
T Consensus 87 ~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GP-----S--l---MpGg~~~Awp~ 155 (487)
T KOG2653|consen 87 FI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGP-----S--L---MPGGSKEAWPH 155 (487)
T ss_pred HH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCC-----c--c---CCCCChHHHHH
Confidence 55 4678889999999999999999999999999888877676666543 2221112 1 1 44778888888
Q ss_pred HHHHHHHHHHHHHHcCC
Q 007040 314 IRDKAISVLQTFFFDGV 330 (620)
Q Consensus 314 ~~~~a~enL~~~L~~G~ 330 (620)
+..++...-.. ..+|+
T Consensus 156 ik~ifq~iaak-v~~~e 171 (487)
T KOG2653|consen 156 IKDIFQKIAAK-VSDGE 171 (487)
T ss_pred HHHHHHHHHHH-hcCCC
Confidence 87766555333 23444
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.012 Score=62.21 Aligned_cols=91 Identities=11% Similarity=0.182 Sum_probs=60.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC--CEEEEECCCCCCCCcc---c-------cCCc-eecCCHHhhhcCCcEEEEcccCC
Q 007040 163 LVLGIVGRSASARALATRSLSFK--MSVLYFDVPEGKGKVT---F-------PSAA-RRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG--~~V~~~dr~~~~~~~~---~-------~~g~-~~~~sL~eLL~~sDvVil~lPlT 229 (620)
++|+|||.|.+|..+|..|...| .+|..+|++....... + .... ....+. +.+..||+|+++....
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~-~~l~~aDIVIitag~~ 79 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDY-SDCKDADIVVITAGAP 79 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCH-HHhCCCCEEEEccCCC
Confidence 37999999999999999999888 4899999976543210 0 1111 122334 4578999999998753
Q ss_pred hh-----------hHhhcC--HHHhhccCCCcEEEEcC
Q 007040 230 DE-----------TIQIIN--AECLQHIKPGAFLVNTG 254 (620)
Q Consensus 230 ~~-----------T~~lI~--~~~L~~MK~gAiLINvg 254 (620)
.. +..+|. ...+....|.+++|+++
T Consensus 80 ~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs 117 (306)
T cd05291 80 QKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS 117 (306)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 11 222221 23455567899999987
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.011 Score=61.51 Aligned_cols=106 Identities=13% Similarity=0.110 Sum_probs=63.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEEEE-ECCCCCCC--CccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 163 LVLGIVGRSASARALATRSLSF-KMSVLY-FDVPEGKG--KVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-G~~V~~-~dr~~~~~--~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
++|||||+|.||+.+++.+... ++++.+ +++..... ......+...+.+++++-...|+|+.|.|.... . .
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~-~----e 76 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAAL-K----E 76 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHH-H----H
Confidence 4799999999999999999865 565543 33322111 111212345567888885568999999995422 1 1
Q ss_pred HHhhccCCCcEEEEcCCChhhcH---HHHHHHHHcCCc
Q 007040 239 ECLQHIKPGAFLVNTGSSQLLDD---CAVKQLLIDGTL 273 (620)
Q Consensus 239 ~~L~~MK~gAiLINvgRG~vVDe---~AL~~AL~~G~I 273 (620)
-....++.|.-++-.+-|.+.|. +.|.++.+++..
T Consensus 77 ~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~ 114 (265)
T PRK13303 77 HVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGA 114 (265)
T ss_pred HHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCC
Confidence 22333445555554555544443 446666655543
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.017 Score=61.68 Aligned_cols=107 Identities=10% Similarity=-0.017 Sum_probs=73.6
Q ss_pred hhHHHHHHHhhCCCEEEEECCCCCCCC------------------cccc-------------CCceecCC--HHhhhcCC
Q 007040 173 SARALATRSLSFKMSVLYFDVPEGKGK------------------VTFP-------------SAARRMDT--LNDLLAAS 219 (620)
Q Consensus 173 IG~~vA~~LkafG~~V~~~dr~~~~~~------------------~~~~-------------~g~~~~~s--L~eLL~~s 219 (620)
||..||..+...|++|..||+++.... .... .......+ +.+.+++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 789999999999999999999884210 0000 01112222 55788999
Q ss_pred cEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCC
Q 007040 220 DVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE 282 (620)
Q Consensus 220 DvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E 282 (620)
|+|+-++|...+.+.-+-.+..+.++|+++|..... .+....|.+.+.. .-...++-.|.
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS--~~~~~~la~~~~~-p~r~~g~Hf~~ 140 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTS--TFLVTDLQRHVAH-PERFLNAHWLN 140 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccc--cCCHHHHHhhcCC-cccEEEEecCC
Confidence 999999999999999887778888999999955444 4566666666642 22234444444
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0065 Score=65.79 Aligned_cols=90 Identities=12% Similarity=0.236 Sum_probs=64.8
Q ss_pred CcEEEEEeCChhhHHHHHHHh-hCCC-EEEEECCCCCCCCcc---c---cCCceecCCHHhhhcCCcEEEEcccCChhhH
Q 007040 162 GLVLGIVGRSASARALATRSL-SFKM-SVLYFDVPEGKGKVT---F---PSAARRMDTLNDLLAASDVISLHCAVTDETI 233 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lk-afG~-~V~~~dr~~~~~~~~---~---~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~ 233 (620)
-++++|||.|..|+.-++.+. -+.. +|.+|+|++...... . ...+..++++++++++||||+++.|.+ +..
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~-~~~ 207 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADK-TNA 207 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC-CCC
Confidence 467999999999988887665 4445 899999997543311 0 112344678999999999999999743 222
Q ss_pred hhcCHHHhhccCCCcEEEEcCC
Q 007040 234 QIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgR 255 (620)
-+|..+ .+|||+.++-+|.
T Consensus 208 Pvl~~~---~lkpG~hV~aIGs 226 (346)
T PRK07589 208 TILTDD---MVEPGMHINAVGG 226 (346)
T ss_pred ceecHH---HcCCCcEEEecCC
Confidence 456654 5699998888774
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0061 Score=61.20 Aligned_cols=91 Identities=12% Similarity=0.002 Sum_probs=56.0
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-cC-Ccee--cCCHHhhhcCCcEEEEcccCChhhH
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF-PS-AARR--MDTLNDLLAASDVISLHCAVTDETI 233 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~-~~-g~~~--~~sL~eLL~~sDvVil~lPlT~~T~ 233 (620)
.++.|+++.|||.|.+|..-++.|..+|++|+++++......... .. .+.. -.--.+.+..+|+|+.+....+-
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~l-- 82 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEEL-- 82 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHHH--
Confidence 468999999999999999999999999999999998754211011 01 1110 00113345677777666443322
Q ss_pred hhcCHHHhhccCCCcEEEEc
Q 007040 234 QIINAECLQHIKPGAFLVNT 253 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINv 253 (620)
|.......+.-.++||+
T Consensus 83 ---n~~i~~~a~~~~ilvn~ 99 (205)
T TIGR01470 83 ---NRRVAHAARARGVPVNV 99 (205)
T ss_pred ---HHHHHHHHHHcCCEEEE
Confidence 23334444444566664
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0058 Score=62.41 Aligned_cols=96 Identities=21% Similarity=0.249 Sum_probs=66.0
Q ss_pred cEEEEEeCChhhHHHHHHHhh--CCC-EEEEECCCCCCCCcc-ccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 163 LVLGIVGRSASARALATRSLS--FKM-SVLYFDVPEGKGKVT-FPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lka--fG~-~V~~~dr~~~~~~~~-~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
++|||||+|.||+.+.+.++. .++ .|.+||++....... ...+.....+++++++..|+|+=|.... ..+.+
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~~-Av~e~--- 76 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASPE-AVREY--- 76 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCHH-HHHHH---
Confidence 479999999999999999984 245 588999987554411 1223334578999999999999877532 22222
Q ss_pred HHhhccCCCcEEEEcCCChhhcHHH
Q 007040 239 ECLQHIKPGAFLVNTGSSQLLDDCA 263 (620)
Q Consensus 239 ~~L~~MK~gAiLINvgRG~vVDe~A 263 (620)
..+.++.|.=+|=++-|.+.|+.-
T Consensus 77 -~~~~L~~g~d~iV~SVGALad~~l 100 (255)
T COG1712 77 -VPKILKAGIDVIVMSVGALADEGL 100 (255)
T ss_pred -hHHHHhcCCCEEEEechhccChHH
Confidence 234456666666677788775543
|
|
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0086 Score=64.46 Aligned_cols=88 Identities=18% Similarity=0.291 Sum_probs=68.8
Q ss_pred CcEEEEEeCChhhHHHHHHHhh-CCC-EEEEECCCCCCCCcc-------ccCCceecCCHHhhhcCCcEEEEcccCChhh
Q 007040 162 GLVLGIVGRSASARALATRSLS-FKM-SVLYFDVPEGKGKVT-------FPSAARRMDTLNDLLAASDVISLHCAVTDET 232 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lka-fG~-~V~~~dr~~~~~~~~-------~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T 232 (620)
-.++||||.|..+..-++.++. |+. +|.+|+|++...+.. +...+....+.++++..||+|+.+.|.+.
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~-- 207 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE-- 207 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC--
Confidence 4569999999999999999874 555 899999998554411 11124567899999999999999999775
Q ss_pred HhhcCHHHhhccCCCcEEEEcCC
Q 007040 233 IQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 233 ~~lI~~~~L~~MK~gAiLINvgR 255 (620)
-+|..+. ++||+.+..+|.
T Consensus 208 -Pil~~~~---l~~G~hI~aiGa 226 (330)
T COG2423 208 -PVLKAEW---LKPGTHINAIGA 226 (330)
T ss_pred -CeecHhh---cCCCcEEEecCC
Confidence 5776654 569999999984
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0083 Score=59.87 Aligned_cols=88 Identities=15% Similarity=0.081 Sum_probs=58.9
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC-------------------------ccccCCc----
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK-------------------------VTFPSAA---- 206 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~-------------------------~~~~~g~---- 206 (620)
...|.+++|.|||+|.+|..+|+.|...|. ++..+|+..-... ......+
T Consensus 16 q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~ 95 (202)
T TIGR02356 16 QQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTA 95 (202)
T ss_pred HHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEE
Confidence 356899999999999999999999999998 8999997631110 0000000
Q ss_pred ----eecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccC
Q 007040 207 ----RRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIK 245 (620)
Q Consensus 207 ----~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK 245 (620)
....++++++.++|+|+.++. +.+++.+++.......+
T Consensus 96 ~~~~i~~~~~~~~~~~~D~Vi~~~d-~~~~r~~l~~~~~~~~i 137 (202)
T TIGR02356 96 LKERVTAENLELLINNVDLVLDCTD-NFATRYLINDACVALGT 137 (202)
T ss_pred ehhcCCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCC
Confidence 001234567788888877764 45677777765555433
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.022 Score=52.55 Aligned_cols=103 Identities=20% Similarity=0.162 Sum_probs=60.6
Q ss_pred cEEEEEeC-ChhhHHHHHHHhh-CCCEEE-EECCCCCCCC--------ccccCCceecCCHHhhhcCCcEEEEcccCChh
Q 007040 163 LVLGIVGR-SASARALATRSLS-FKMSVL-YFDVPEGKGK--------VTFPSAARRMDTLNDLLAASDVISLHCAVTDE 231 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~Lka-fG~~V~-~~dr~~~~~~--------~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~ 231 (620)
.+|+|+|+ |+||+.+++.+.. -|+++. ++++...... .....++...+++++++..+|+|+-.. +|+
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT--~p~ 78 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT--NPD 78 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES---HH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC--ChH
Confidence 37999999 9999999999997 788855 5566652111 011345556689999999999998776 343
Q ss_pred hHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 232 TIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 232 T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
...-+-+.. ++.|.-+|-...|---.+.+.++.+..
T Consensus 79 ~~~~~~~~~---~~~g~~~ViGTTG~~~~~~~~l~~~a~ 114 (124)
T PF01113_consen 79 AVYDNLEYA---LKHGVPLVIGTTGFSDEQIDELEELAK 114 (124)
T ss_dssp HHHHHHHHH---HHHT-EEEEE-SSSHHHHHHHHHHHTT
T ss_pred HhHHHHHHH---HhCCCCEEEECCCCCHHHHHHHHHHhc
Confidence 222211222 233656666556654444444444443
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0097 Score=54.33 Aligned_cols=87 Identities=18% Similarity=0.228 Sum_probs=51.7
Q ss_pred EEEEEe-CChhhHHHHHHHhh-CCCEEEE-ECCCCCCCCc---ccc--CCc---eecCCHHhhhcCCcEEEEcccCChhh
Q 007040 164 VLGIVG-RSASARALATRSLS-FKMSVLY-FDVPEGKGKV---TFP--SAA---RRMDTLNDLLAASDVISLHCAVTDET 232 (620)
Q Consensus 164 tVGIIG-lG~IG~~vA~~Lka-fG~~V~~-~dr~~~~~~~---~~~--~g~---~~~~sL~eLL~~sDvVil~lPlT~~T 232 (620)
+||||| .|.+|+.+.++|.. ..+++.. +++....... .++ .+. ...+.-.+.+.++|+|++|+|....
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~- 79 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGAS- 79 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHH-
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHH-
Confidence 589999 99999999999985 4566544 4444423221 111 001 1111122445899999999995422
Q ss_pred HhhcCHHHhhccCCCcEEEEcCC
Q 007040 233 IQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 233 ~~lI~~~~L~~MK~gAiLINvgR 255 (620)
..+. ... +++|..+|+.+.
T Consensus 80 ~~~~-~~~---~~~g~~ViD~s~ 98 (121)
T PF01118_consen 80 KELA-PKL---LKAGIKVIDLSG 98 (121)
T ss_dssp HHHH-HHH---HHTTSEEEESSS
T ss_pred HHHH-HHH---hhCCcEEEeCCH
Confidence 2221 212 578889999875
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PRK14030 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.052 Score=60.70 Aligned_cols=160 Identities=15% Similarity=0.060 Sum_probs=99.8
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEE--------ECCCCCCCCc--------------------cccCCceecC
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLY--------FDVPEGKGKV--------------------TFPSAARRMD 210 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~--------~dr~~~~~~~--------------------~~~~g~~~~~ 210 (620)
++.|++|.|=|+|++|+.+|+.|..+|++|++ ||+..-.... .++ +....
T Consensus 225 ~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~-ga~~i- 302 (445)
T PRK14030 225 DIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFP-GSTFF- 302 (445)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCC-CCEEc-
Confidence 58999999999999999999999999999999 7765432211 111 22222
Q ss_pred CHHhhh-cCCcEEEEcccCChhhHhhcCHHHhhccC--CCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCC-CC
Q 007040 211 TLNDLL-AASDVISLHCAVTDETIQIINAECLQHIK--PGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGP-QW 286 (620)
Q Consensus 211 sL~eLL-~~sDvVil~lPlT~~T~~lI~~~~L~~MK--~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P-~~ 286 (620)
+-++++ ..|||++-|. +.+.|+.+....+. .-.+++-.+-+ .+..+| .+.|.+..|. .+=|+.-+- -.
T Consensus 303 ~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA-~~iL~~rGI~-~vPD~~aNAGGV 374 (445)
T PRK14030 303 AGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEA-IDKFIAAKQL-FAPGKAVNAGGV 374 (445)
T ss_pred CCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHH-HHHHHHCCCE-EeCcceecCCCe
Confidence 233443 3589888555 67788888877772 24566677777 455444 3666766665 344443220 00
Q ss_pred CCccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCC
Q 007040 287 MEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVI 331 (620)
Q Consensus 287 ~~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~ 331 (620)
.-+-+--..|. -|..|..++..+++.+.+.+.+.+.+..++.
T Consensus 375 ivs~~E~~qn~---~~~~w~~eeV~~~L~~~m~~~~~~v~~~~~~ 416 (445)
T PRK14030 375 ATSGLEMSQNA---MHLSWSAEEVDEKLHQIMSGIHEQCVKYGKE 416 (445)
T ss_pred eeehhhhhccc---cccCcCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 00100011122 4677777888888888888877777655543
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.008 Score=64.80 Aligned_cols=85 Identities=20% Similarity=0.108 Sum_probs=58.5
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC----------c-----------------cccCCc--
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK----------V-----------------TFPSAA-- 206 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~----------~-----------------~~~~g~-- 206 (620)
...|.+++|.|||.|.+|..+|+.|...|. ++..+|+..-... . .....+
T Consensus 19 Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i 98 (338)
T PRK12475 19 QRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEI 98 (338)
T ss_pred HHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEE
Confidence 467899999999999999999999999998 8888998641100 0 000001
Q ss_pred e------ecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhh
Q 007040 207 R------RMDTLNDLLAASDVISLHCAVTDETIQIINAECLQ 242 (620)
Q Consensus 207 ~------~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~ 242 (620)
. ...++++++.++|+|+.++ .+.+++-+|+.-...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~DlVid~~-D~~~~r~~in~~~~~ 139 (338)
T PRK12475 99 VPVVTDVTVEELEELVKEVDLIIDAT-DNFDTRLLINDLSQK 139 (338)
T ss_pred EEEeccCCHHHHHHHhcCCCEEEEcC-CCHHHHHHHHHHHHH
Confidence 0 1134567788888888777 566777777765443
|
|
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.044 Score=60.73 Aligned_cols=148 Identities=16% Similarity=0.099 Sum_probs=89.6
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEE-CCCC-------CCCC------------ccccCCceecCCHHhhhcC
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYF-DVPE-------GKGK------------VTFPSAARRMDTLNDLLAA 218 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~-dr~~-------~~~~------------~~~~~g~~~~~sL~eLL~~ 218 (620)
++.|++|.|.|+|++|+.+|+.|...|++|+++ |.+. -... ..++ +....+.-+-+...
T Consensus 203 ~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~-~a~~i~~~e~l~~~ 281 (410)
T PLN02477 203 SIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFP-GGDPIDPDDILVEP 281 (410)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccc-cceEecCccceecc
Confidence 589999999999999999999999999999944 5441 0000 0010 11122222223447
Q ss_pred CcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEE
Q 007040 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVL 298 (620)
Q Consensus 219 sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVI 298 (620)
|||++-|. ..+.|+.+....++ -.+++-.+-+++ .. +-.+.|.+..|. .+=|+.-+ .-.||
T Consensus 282 ~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t~-ea~~~L~~rGI~-~~PD~~aN----------aGGVi 342 (410)
T PLN02477 282 CDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-DP-EADEILRKKGVV-VLPDIYAN----------SGGVT 342 (410)
T ss_pred ccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-CH-HHHHHHHHCCcE-EEChHHhC----------CCCee
Confidence 88888654 45678888888875 668888888887 33 344777777665 23333221 12222
Q ss_pred EcC--------CCCCCcHHHHHHHHHHHHHHHHHHH
Q 007040 299 ILP--------RSADYSEEVWMEIRDKAISVLQTFF 326 (620)
Q Consensus 299 lTP--------HiAg~T~ea~~~~~~~a~enL~~~L 326 (620)
++= |.-|..++...++.+.+.+.+.+.+
T Consensus 343 vs~~E~~qn~~~~~w~~~~v~~~l~~~m~~~~~~v~ 378 (410)
T PLN02477 343 VSYFEWVQNIQGFMWEEEKVNRELDRYMTDAFKALK 378 (410)
T ss_pred eeHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 221 2334445566666656666666554
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.019 Score=60.43 Aligned_cols=103 Identities=17% Similarity=0.207 Sum_probs=61.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCc--------cccCC----ceecCCHHhhhcCCcEEEEccc--
Q 007040 163 LVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKV--------TFPSA----ARRMDTLNDLLAASDVISLHCA-- 227 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~--------~~~~g----~~~~~sL~eLL~~sDvVil~lP-- 227 (620)
++|+|||.|.+|..+|..+...|. +|..+|+....... ....+ +....+.+ .+..||+|+++..
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~-~~~~aDiVii~~~~p 81 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYE-DIAGSDVVVITAGVP 81 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHH-HHCCCCEEEECCCCC
Confidence 579999999999999999987665 99999986543220 00000 11123454 5789999999863
Q ss_pred CCh---------hhHhhcC--HHHhhccCCCcEEEEcCCChhhcHHHHHH
Q 007040 228 VTD---------ETIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCAVKQ 266 (620)
Q Consensus 228 lT~---------~T~~lI~--~~~L~~MK~gAiLINvgRG~vVDe~AL~~ 266 (620)
..+ .+..++. .+.+....|.+++|+++-.-=+-...+.+
T Consensus 82 ~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~ 131 (307)
T PRK06223 82 RKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALK 131 (307)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHH
Confidence 211 1222221 12233344678888886443333333333
|
|
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.012 Score=64.81 Aligned_cols=109 Identities=10% Similarity=0.052 Sum_probs=65.0
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhH--------
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI-------- 233 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~-------- 233 (620)
.++|.|||+|.+|.++|+.|+..|++|.++|++..................+.+..++|+|+.+.+..+...
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A~~~ 82 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAAIAS 82 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHHHHC
Confidence 367999999999999999999999999999987643221000000011233344577999888876553211
Q ss_pred --hhcCHHHh--hc--cCC-CcEEEEcCCChhhcHHHHHHHHHc
Q 007040 234 --QIINAECL--QH--IKP-GAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 234 --~lI~~~~L--~~--MK~-gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
.++....+ .. +.+ -.|=|--+-|+.--..=|...|+.
T Consensus 83 g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~ 126 (418)
T PRK00683 83 HIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKR 126 (418)
T ss_pred CCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHH
Confidence 12222222 11 212 234444455777777777777764
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.0067 Score=63.60 Aligned_cols=70 Identities=13% Similarity=0.097 Sum_probs=50.7
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcccc---C--Cceec---CCHHhhhcCCcEEEEcccCC
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFP---S--AARRM---DTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~~---~--g~~~~---~sL~eLL~~sDvVil~lPlT 229 (620)
+.|+++.|||.|.+|++++..|...|+ +|++++|+......... . .+... +++.+.+.++|+||.++|..
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g 201 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD 201 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence 578899999999999999999999998 79999998643331110 0 01111 23345667899999999875
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0066 Score=54.46 Aligned_cols=79 Identities=14% Similarity=0.154 Sum_probs=56.0
Q ss_pred hhHHHHHHHhhCCCEEEEECCCCCCCCccc---cCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC-HHHhhccCCCc
Q 007040 173 SARALATRSLSFKMSVLYFDVPEGKGKVTF---PSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN-AECLQHIKPGA 248 (620)
Q Consensus 173 IG~~vA~~LkafG~~V~~~dr~~~~~~~~~---~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~-~~~L~~MK~gA 248 (620)
-+..|++.|+..|++|.+|||......... ..+....+++++.++.+|+|+++.+.. +-.. ++ .+....|+++.
T Consensus 18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~-~f~~-l~~~~~~~~~~~~~ 95 (106)
T PF03720_consen 18 PALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHD-EFRE-LDWEEIAKLMRKPP 95 (106)
T ss_dssp HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--G-GGGC-CGHHHHHHHSCSSE
T ss_pred HHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCH-HHhc-cCHHHHHHhcCCCC
Confidence 468899999999999999999975443211 134556678999999999999999865 2222 44 34556788899
Q ss_pred EEEEc
Q 007040 249 FLVNT 253 (620)
Q Consensus 249 iLINv 253 (620)
+||++
T Consensus 96 ~iiD~ 100 (106)
T PF03720_consen 96 VIIDG 100 (106)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 99987
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.022 Score=60.84 Aligned_cols=94 Identities=14% Similarity=0.192 Sum_probs=61.2
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC---------ccccCCce-ecCCHHhhhcCCcEEEEcccC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK---------VTFPSAAR-RMDTLNDLLAASDVISLHCAV 228 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~--~V~~~dr~~~~~~---------~~~~~g~~-~~~sL~eLL~~sDvVil~lPl 228 (620)
++++|+|||.|.+|..+|-.|...|. ++..||.+..... ..+..... ...+. +.+++||+|+++.-.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~-~~~~~adivIitag~ 83 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDY-SDCKDADLVVITAGA 83 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCH-HHhCCCCEEEEecCC
Confidence 57899999999999999999998888 8999998764322 00101112 22334 557999999997643
Q ss_pred Ch---hhH--------hhcC--HHHhhccCCCcEEEEcCC
Q 007040 229 TD---ETI--------QIIN--AECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 229 T~---~T~--------~lI~--~~~L~~MK~gAiLINvgR 255 (620)
.. .++ .++. ...+..-.|.+++|+++-
T Consensus 84 ~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsN 123 (315)
T PRK00066 84 PQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASN 123 (315)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 21 122 2221 123333457899999873
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.0048 Score=57.56 Aligned_cols=110 Identities=10% Similarity=0.075 Sum_probs=71.0
Q ss_pred EEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCc--------------eecCCHHhhhcCCcEEEEcccCCh
Q 007040 165 LGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA--------------RRMDTLNDLLAASDVISLHCAVTD 230 (620)
Q Consensus 165 VGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~--------------~~~~sL~eLL~~sDvVil~lPlT~ 230 (620)
|+|+|.|.||.-+|..|+..|++|..+.+.. ..+.....+. .......+.....|+|++++...
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~- 78 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAY- 78 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGG-
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEeccc-
Confidence 6899999999999999999999999999877 2110000011 01111224567899999999754
Q ss_pred hhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEe
Q 007040 231 ETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCAL 278 (620)
Q Consensus 231 ~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaL 278 (620)
++...+.. .-..+.+++.+|-.--| +-.++.|.+.+-...+.++..
T Consensus 79 ~~~~~l~~-l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~~ 124 (151)
T PF02558_consen 79 QLEQALQS-LKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGVT 124 (151)
T ss_dssp GHHHHHHH-HCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEEE
T ss_pred chHHHHHH-HhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEEE
Confidence 44555544 55566777777776655 444566666664556654443
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.037 Score=59.25 Aligned_cols=107 Identities=16% Similarity=0.206 Sum_probs=67.0
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC---------cc-cc--CCceecCCHHhhhcCCcEEEEcc
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK---------VT-FP--SAARRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~---------~~-~~--~g~~~~~sL~eLL~~sDvVil~l 226 (620)
+..++|+|||.|.||..+|..+...|. .|+.+|.++.... .. .. ..+....++ +.++.||+|+++.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 445799999999999999999987785 8999998775321 00 00 112223466 4678999999976
Q ss_pred cCC----------------hhhHhhcC--HHHhhccCCCcEEEEcCCChhhcHHHHHHH
Q 007040 227 AVT----------------DETIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCAVKQL 267 (620)
Q Consensus 227 PlT----------------~~T~~lI~--~~~L~~MK~gAiLINvgRG~vVDe~AL~~A 267 (620)
-.. .++..++. .+.+....|.+++||++-..-+-...+.+.
T Consensus 83 g~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~ 141 (321)
T PTZ00082 83 GLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEH 141 (321)
T ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHh
Confidence 221 11222221 123445567889999985443334444433
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.02 Score=62.79 Aligned_cols=110 Identities=10% Similarity=0.119 Sum_probs=79.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-------ccccC------------C-ceecCCHHhhhcCCcEE
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-------VTFPS------------A-ARRMDTLNDLLAASDVI 222 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~-------~~~~~------------g-~~~~~sL~eLL~~sDvV 222 (620)
++|.|||.|-.|-..|..+..+|++|+++|..+...+ +.++. + .....+..+.++.+|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 5799999999999999999999999999998753221 11111 1 23456788899999999
Q ss_pred EEcccCChhhHhhc--------CHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCC
Q 007040 223 SLHCAVTDETIQII--------NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGT 272 (620)
Q Consensus 223 il~lPlT~~T~~lI--------~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~ 272 (620)
++++|..+.-.+-+ -++....++..+++|+=|.-.+=-.+.+.+.+....
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~ 138 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREEN 138 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhc
Confidence 99999665433333 234666777779999999877766666666555443
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.013 Score=63.71 Aligned_cols=63 Identities=21% Similarity=0.281 Sum_probs=49.7
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCcee-----cCCHHhhhcCCcEEEE
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR-----MDTLNDLLAASDVISL 224 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~-----~~sL~eLL~~sDvVil 224 (620)
+++|||||-|-.|+-|+.....+|++|++.|+.+............. ...+.++.+.||+|..
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 47899999999999999999999999999999876544222222211 2358899999999986
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.0092 Score=64.40 Aligned_cols=39 Identities=15% Similarity=0.159 Sum_probs=35.4
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK 199 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~ 199 (620)
.|++|+|+|+|..|-...+.++++|++|+++|++..+.+
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e 204 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLE 204 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHH
Confidence 489999999999999999999999999999999886543
|
|
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.073 Score=59.60 Aligned_cols=109 Identities=7% Similarity=0.016 Sum_probs=71.7
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEE-CCCCC-------CCC-------------ccccC--CceecCCHHh
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYF-DVPEG-------KGK-------------VTFPS--AARRMDTLND 214 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~-dr~~~-------~~~-------------~~~~~--g~~~~~sL~e 214 (620)
.++.|++|.|.|+|++|+.+|+.|..+|++|+++ |.+.. ... ..++. +... .+.++
T Consensus 228 ~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~-i~~~~ 306 (445)
T PRK09414 228 DSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEY-LEGGS 306 (445)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCee-cCCcc
Confidence 3589999999999999999999999999999988 53210 000 00110 1111 23344
Q ss_pred hhc-CCcEEEEcccCChhhHhhcCHHHhhccC--CCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 215 LLA-ASDVISLHCAVTDETIQIINAECLQHIK--PGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 215 LL~-~sDvVil~lPlT~~T~~lI~~~~L~~MK--~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
++. +|||++-|.. .+.|+.+....++ .-.+++-.+-+++ . .+-.+.|.++.|.
T Consensus 307 i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~-t-~~A~~~L~~rGI~ 362 (445)
T PRK09414 307 PWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS-T-PEAIEVFLEAGVL 362 (445)
T ss_pred ccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC-C-HHHHHHHHHCCcE
Confidence 444 6899997664 4577777666663 3457777788887 3 3345677777665
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.035 Score=61.84 Aligned_cols=111 Identities=14% Similarity=0.083 Sum_probs=70.7
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-----ccccCCceec--CCHHhhhcCCcEEEEcccCChhh
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-----VTFPSAARRM--DTLNDLLAASDVISLHCAVTDET 232 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~-----~~~~~g~~~~--~sL~eLL~~sDvVil~lPlT~~T 232 (620)
+.+++|+|+|+|..|.++|+.|+..|+.|.++|....... .....|+... ....+.+..+|+|++. |.-+.+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~~ 90 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRID 90 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCCC
Confidence 5688999999999999999999999999999998653221 1111233221 2223556789999887 544332
Q ss_pred Hhh-----------cCH-HHhhc-cCCCcEEEEcCCChhhcHHHHHHHHHcC
Q 007040 233 IQI-----------INA-ECLQH-IKPGAFLVNTGSSQLLDDCAVKQLLIDG 271 (620)
Q Consensus 233 ~~l-----------I~~-~~L~~-MK~gAiLINvgRG~vVDe~AL~~AL~~G 271 (620)
..+ ++. +.+.. .+...+-|--+.|+.--..-|...|...
T Consensus 91 ~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~ 142 (458)
T PRK01710 91 SPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEE 142 (458)
T ss_pred chHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhC
Confidence 222 221 22222 2333455555678888877777888743
|
|
| >PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2 | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.031 Score=53.86 Aligned_cols=94 Identities=18% Similarity=0.240 Sum_probs=67.0
Q ss_pred cCcEEEEEe--CChhhHHHHHHHhhCCCEEEEECCCCCC--CCc-cc----------cCCceecCCHHhhhcCCcEEEEc
Q 007040 161 RGLVLGIVG--RSASARALATRSLSFKMSVLYFDVPEGK--GKV-TF----------PSAARRMDTLNDLLAASDVISLH 225 (620)
Q Consensus 161 ~GktVGIIG--lG~IG~~vA~~LkafG~~V~~~dr~~~~--~~~-~~----------~~g~~~~~sL~eLL~~sDvVil~ 225 (620)
.|++|++|| .+++..+++..+..||++|.++.|..-. ... .. ...+....++++.++.+|||..-
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~ 80 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD 80 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence 388999999 3899999999999999999999987622 210 00 11234568999999999999876
Q ss_pred ccC----Chh------hH-hhcCHHHhhccCCCcEEEEcC
Q 007040 226 CAV----TDE------TI-QIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 226 lPl----T~~------T~-~lI~~~~L~~MK~gAiLINvg 254 (620)
.-. .+. .. -.|+.+.++.+|++++|.-+.
T Consensus 81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L 120 (158)
T PF00185_consen 81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL 120 (158)
T ss_dssp SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence 654 111 11 346888888888888888764
|
1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A .... |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.016 Score=58.68 Aligned_cols=93 Identities=17% Similarity=0.167 Sum_probs=62.8
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC---c--c-----c----------------c-CCce--
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK---V--T-----F----------------P-SAAR-- 207 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~---~--~-----~----------------~-~g~~-- 207 (620)
..|..++|.|||+|.+|..+|+.|...|+ +++.+|...-... . . . + ..+.
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~ 96 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY 96 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 56899999999999999999999999999 7888876531111 0 0 0 0 0000
Q ss_pred --e--cCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcC
Q 007040 208 --R--MDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 208 --~--~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvg 254 (620)
. ..++.+++..+|+|+.|+. +.+++.+++...... +.-+|.++
T Consensus 97 ~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~---~ip~i~~g 143 (228)
T cd00757 97 NERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVKL---GKPLVSGA 143 (228)
T ss_pred cceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHHc---CCCEEEEE
Confidence 1 1234567888999888876 567777777655443 45566654
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.021 Score=60.19 Aligned_cols=91 Identities=20% Similarity=0.338 Sum_probs=56.4
Q ss_pred EEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC-------cc---ccC--CceecCCHHhhhcCCcEEEEcccCC--
Q 007040 165 LGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK-------VT---FPS--AARRMDTLNDLLAASDVISLHCAVT-- 229 (620)
Q Consensus 165 VGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~-------~~---~~~--g~~~~~sL~eLL~~sDvVil~lPlT-- 229 (620)
|+|||.|.||..+|..+...|. +|+.+|++..... .. ... .+....+.+ .++.||+|+++....
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~-~l~dADiVIit~g~p~~ 79 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYE-DIAGSDVVVITAGIPRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHH-HhCCCCEEEEecCCCCC
Confidence 6899999999999999986665 9999998764221 00 000 111224454 578999999977421
Q ss_pred ---------hhhHhhcC--HHHhhccCCCcEEEEcCCC
Q 007040 230 ---------DETIQIIN--AECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 230 ---------~~T~~lI~--~~~L~~MK~gAiLINvgRG 256 (620)
+++..++- ...+....|.+++|+++-.
T Consensus 80 ~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP 117 (300)
T cd01339 80 PGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNP 117 (300)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 11222221 1234445577888887743
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.063 Score=56.81 Aligned_cols=106 Identities=17% Similarity=0.208 Sum_probs=73.7
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhH---h---
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI---Q--- 234 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~---~--- 234 (620)
.|++++|||--.=-..+++.|.+.|++|+.+.-....- ...|+....+.++++.++|+|++-+|.+.+.. .
T Consensus 1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~---~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~ 77 (296)
T PRK08306 1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDH---GFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFS 77 (296)
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEecccccc---ccCCceeeccHHHHhccCCEEEECCccccCCceeecccc
Confidence 37889999999989999999999999998754322110 12355556678899999999999999764321 1
Q ss_pred ----hcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 235 ----IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 235 ----lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
-++.+.++.|++|.+++ +|.+.-- +-+.+.+..|.
T Consensus 78 ~~~~~~~~~~l~~l~~~~~v~-~G~~~~~----~~~~~~~~gi~ 116 (296)
T PRK08306 78 NEKLVLTEELLELTPEHCTIF-SGIANPY----LKELAKETNRK 116 (296)
T ss_pred ccCCcchHHHHHhcCCCCEEE-EecCCHH----HHHHHHHCCCe
Confidence 13578999999998444 4443221 33445566665
|
|
| >TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.055 Score=55.95 Aligned_cols=89 Identities=18% Similarity=0.188 Sum_probs=61.3
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQ 242 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~ 242 (620)
-++-|+|.|.+++++|+.++.+|++|+++|+++..... ..+..++.+....| .+.+.
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~~-------------~~~~~~~~~~~~~~----------~~~~~ 157 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFPE-------------DLPDGVATLVTDEP----------EAEVA 157 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccccc-------------cCCCCceEEecCCH----------HHHHh
Confidence 35899999999999999999999999999977631110 11123443332222 12223
Q ss_pred ccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 243 HIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 243 ~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
.+.+...+|=+.++.-.|..+|..+|......
T Consensus 158 ~~~~~t~vvi~th~h~~D~~~L~~aL~~~~~~ 189 (246)
T TIGR02964 158 EAPPGSYFLVLTHDHALDLELCHAALRRGDFA 189 (246)
T ss_pred cCCCCcEEEEEeCChHHHHHHHHHHHhCCCCc
Confidence 35567778888899999999999999654443
|
Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products. |
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.023 Score=54.72 Aligned_cols=38 Identities=16% Similarity=-0.048 Sum_probs=35.2
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
.+|.|++|.|||-|.+|...++.|...|++|.++++..
T Consensus 9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~ 46 (157)
T PRK06719 9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEI 46 (157)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCcc
Confidence 57999999999999999999999999999999998654
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.022 Score=59.86 Aligned_cols=36 Identities=17% Similarity=0.348 Sum_probs=33.2
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCE-EEEECCCC
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMS-VLYFDVPE 195 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~-V~~~dr~~ 195 (620)
+.|+++.|+|.|.+|+++|..|...|++ |++++|+.
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 5788999999999999999999999995 99999975
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.038 Score=59.76 Aligned_cols=99 Identities=19% Similarity=0.256 Sum_probs=62.3
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhC-CCEEEE-ECCCCCCCCcc---cc--CCc--eec--CCHHhhhcCCcEEEEcccCCh
Q 007040 163 LVLGIVGR-SASARALATRSLSF-KMSVLY-FDVPEGKGKVT---FP--SAA--RRM--DTLNDLLAASDVISLHCAVTD 230 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~Lkaf-G~~V~~-~dr~~~~~~~~---~~--~g~--~~~--~sL~eLL~~sDvVil~lPlT~ 230 (620)
++|+|||. |.+|+.+++.|..+ ++++.. +++........ ++ .+. ... .+.++++..+|+|++|+|..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~- 79 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHG- 79 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCch-
Confidence 47999998 99999999999987 778884 46544222211 11 010 012 24566667899999999955
Q ss_pred hhHhhcCHHHhhc-cCCCcEEEEcCCChhhcHHHHHHH
Q 007040 231 ETIQIINAECLQH-IKPGAFLVNTGSSQLLDDCAVKQL 267 (620)
Q Consensus 231 ~T~~lI~~~~L~~-MK~gAiLINvgRG~vVDe~AL~~A 267 (620)
.. .+.... .+.|..+|+.+-.-=.+..++++.
T Consensus 80 ~s-----~~~~~~~~~~G~~VIDlS~~fR~~~~~~y~~ 112 (346)
T TIGR01850 80 VS-----AELAPELLAAGVKVIDLSADFRLKDPEVYEK 112 (346)
T ss_pred HH-----HHHHHHHHhCCCEEEeCChhhhcCChhhhHH
Confidence 22 222222 256899999986555554444443
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.044 Score=58.20 Aligned_cols=91 Identities=14% Similarity=0.191 Sum_probs=59.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC--CEEEEECCCCCCCCc---cccCC-------ceecCCHHhhhcCCcEEEEcccCCh
Q 007040 163 LVLGIVGRSASARALATRSLSFK--MSVLYFDVPEGKGKV---TFPSA-------ARRMDTLNDLLAASDVISLHCAVTD 230 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG--~~V~~~dr~~~~~~~---~~~~g-------~~~~~sL~eLL~~sDvVil~lPlT~ 230 (620)
++|+|||.|.+|..+|..|...| .+|..+|++...... ..... .....+. +.++.||+|+++.+...
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~~~ 79 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGANQ 79 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCCCC
Confidence 46999999999999999999888 589999987632220 01000 1112344 45789999999998632
Q ss_pred h-----------hHhhcC--HHHhhccCCCcEEEEcC
Q 007040 231 E-----------TIQIIN--AECLQHIKPGAFLVNTG 254 (620)
Q Consensus 231 ~-----------T~~lI~--~~~L~~MK~gAiLINvg 254 (620)
. +..++. .+.+....+.+++++++
T Consensus 80 ~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t 116 (308)
T cd05292 80 KPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT 116 (308)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 1 112221 12344455778888875
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14031 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.1 Score=58.40 Aligned_cols=157 Identities=13% Similarity=0.072 Sum_probs=90.4
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCC------C------------------ccccC--CceecCCH
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKG------K------------------VTFPS--AARRMDTL 212 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~------~------------------~~~~~--g~~~~~sL 212 (620)
+|.|++|.|.|+|++|...|+.|..+|++|++++...... . ..+.. +... .+.
T Consensus 225 ~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~-i~~ 303 (444)
T PRK14031 225 DLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKY-VEG 303 (444)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEE-cCC
Confidence 6899999999999999999999999999999854421100 0 00000 1111 133
Q ss_pred Hhhh-cCCcEEEEcccCChhhHhhcCHHHhhccCC-Cc-EEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCC-CCCCC
Q 007040 213 NDLL-AASDVISLHCAVTDETIQIINAECLQHIKP-GA-FLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWME 288 (620)
Q Consensus 213 ~eLL-~~sDvVil~lPlT~~T~~lI~~~~L~~MK~-gA-iLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~-P~~~~ 288 (620)
++++ ..|||++-|. +.+.|+.+....++. |. +++-.+-+ .+..++. +.|.+..|. .+=|+.-+ --..-
T Consensus 304 d~~~~~~cDIliPaA-----l~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~-~~L~~rgI~-~~PD~~aNAGGViv 375 (444)
T PRK14031 304 ARPWGEKGDIALPSA-----TQNELNGDDARQLVANGVIAVSEGANM-PSTPEAI-KVFQDAKIL-YAPGKAANAGGVSV 375 (444)
T ss_pred cccccCCCcEEeecc-----cccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHH-HHHHHCCcE-EeChhhccCCCeee
Confidence 3442 3588888444 567899888888864 44 45555566 5555554 444544443 23333221 00000
Q ss_pred ccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHH
Q 007040 289 AWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFF 327 (620)
Q Consensus 289 spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~ 327 (620)
+-+--..| .-+..|..++..+++.+.+.+...+.+.
T Consensus 376 s~~E~~qn---~~~~~W~~eeV~~~L~~~m~~~~~~v~~ 411 (444)
T PRK14031 376 SGLEMTQN---SIKLSWSSEEVDEKLKSIMKNIHEACVQ 411 (444)
T ss_pred ehhhhhcc---ccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 00001122 2345566677777777777777666553
|
|
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.025 Score=62.74 Aligned_cols=66 Identities=11% Similarity=0.096 Sum_probs=47.0
Q ss_pred cEEEEEeCChhhHHHHH---HH---hhCCCEEEEECCCCCCCCc------------cccCCceecCCHHhhhcCCcEEEE
Q 007040 163 LVLGIVGRSASARALAT---RS---LSFKMSVLYFDVPEGKGKV------------TFPSAARRMDTLNDLLAASDVISL 224 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~---~L---kafG~~V~~~dr~~~~~~~------------~~~~g~~~~~sL~eLL~~sDvVil 224 (620)
.+|+|||.|.+|...+- .+ ...|.+|..||+.+..... .....+....++.+.+..||+|+.
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ 80 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence 36999999999998665 32 3346799999998643220 011123345688899999999999
Q ss_pred cccC
Q 007040 225 HCAV 228 (620)
Q Consensus 225 ~lPl 228 (620)
++|.
T Consensus 81 ai~~ 84 (423)
T cd05297 81 TIQV 84 (423)
T ss_pred eeEe
Confidence 9994
|
linked to 3D####ucture |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.28 Score=49.13 Aligned_cols=72 Identities=10% Similarity=-0.021 Sum_probs=49.0
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-ccccCC-cee-cCC-HHhhhcCCcEEEEcccCC
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-VTFPSA-ARR-MDT-LNDLLAASDVISLHCAVT 229 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~-~~~~~g-~~~-~~s-L~eLL~~sDvVil~lPlT 229 (620)
.++.|+++.|||.|.+|...|+.|...|++|+++++...... .....+ +.. ... ..+.+..+|+|+.++...
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~ 81 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDP 81 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCH
Confidence 578999999999999999999999999999999997643211 111111 111 111 134467788877776644
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.061 Score=57.43 Aligned_cols=92 Identities=21% Similarity=0.209 Sum_probs=59.9
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC---------c-cccC-CceecCCHHhhhcCCcEEEEcccCC
Q 007040 163 LVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK---------V-TFPS-AARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~--~V~~~dr~~~~~~---------~-~~~~-g~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
.+|+|||.|.+|..+|-.|...|. ++..||.+..... . .... .+....+.++ +++||+|+++.-..
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG~~ 82 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAGAR 82 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCCCC
Confidence 589999999999999999876665 8999998764222 1 1111 1222245654 79999999965431
Q ss_pred --h-hhHh-hc--C-------HHHhhccCCCcEEEEcCC
Q 007040 230 --D-ETIQ-II--N-------AECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 230 --~-~T~~-lI--~-------~~~L~~MK~gAiLINvgR 255 (620)
+ .|+- ++ | .+.+....|.+++|+++-
T Consensus 83 ~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 121 (312)
T cd05293 83 QNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSN 121 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccC
Confidence 1 2331 22 1 134455678999999984
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.012 Score=59.81 Aligned_cols=69 Identities=14% Similarity=0.176 Sum_probs=50.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc--CCc-------eecCCHHhh-hcCCcEEEEcccCChh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP--SAA-------RRMDTLNDL-LAASDVISLHCAVTDE 231 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~--~g~-------~~~~sL~eL-L~~sDvVil~lPlT~~ 231 (620)
+++.|||+|..|..+|+.|...|+.|+..|........... ... ...+.|.++ +.++|+++.+......
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~ 79 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEV 79 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHH
Confidence 57899999999999999999999999999998754332111 111 122346666 7889999998886543
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.024 Score=62.16 Aligned_cols=102 Identities=12% Similarity=0.117 Sum_probs=67.2
Q ss_pred ecCcEEEEEeC-ChhhHHHHHHHhhC-CCEEEEECCCCCCCCcc---cc----CCceecCCHHh-hhcCCcEEEEcccCC
Q 007040 160 CRGLVLGIVGR-SASARALATRSLSF-KMSVLYFDVPEGKGKVT---FP----SAARRMDTLND-LLAASDVISLHCAVT 229 (620)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~Lkaf-G~~V~~~dr~~~~~~~~---~~----~g~~~~~sL~e-LL~~sDvVil~lPlT 229 (620)
...++|+|||. |.+|+.+.+.|... +++|..+.+........ .. .......+++. .++.+|+|++++|..
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~ 115 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG 115 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH
Confidence 35568999997 99999999999987 78988887654333210 10 00111222332 257899999999964
Q ss_pred hhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHH
Q 007040 230 DETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQL 267 (620)
Q Consensus 230 ~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~A 267 (620)
.. .+....|+.|..+|+.+..-..+..+.++.
T Consensus 116 -~s-----~~i~~~~~~g~~VIDlSs~fRl~~~~~y~~ 147 (381)
T PLN02968 116 -TT-----QEIIKALPKDLKIVDLSADFRLRDIAEYEE 147 (381)
T ss_pred -HH-----HHHHHHHhCCCEEEEcCchhccCCcccchh
Confidence 33 333444567899999997776776665554
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.027 Score=53.21 Aligned_cols=94 Identities=18% Similarity=0.308 Sum_probs=59.3
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhC--CCEEEEECCCCCCCC----------ccccCCceecCCHHhhhcCCcEEEEcccC-
Q 007040 163 LVLGIVGR-SASARALATRSLSF--KMSVLYFDVPEGKGK----------VTFPSAARRMDTLNDLLAASDVISLHCAV- 228 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~Lkaf--G~~V~~~dr~~~~~~----------~~~~~g~~~~~sL~eLL~~sDvVil~lPl- 228 (620)
++|+|||. |.+|..+|..|... +-++..+|....... ..............+.+++||+|+++.-.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~ 80 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVP 80 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecccc
Confidence 47999999 99999999999854 458999999853211 00101122233566788899999998843
Q ss_pred -Ch-hhH-hhc--C-------HHHhhccCCCcEEEEcCCC
Q 007040 229 -TD-ETI-QII--N-------AECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 229 -T~-~T~-~lI--~-------~~~L~~MK~gAiLINvgRG 256 (620)
.+ +++ .++ | ...+....|.+++|.++-.
T Consensus 81 ~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNP 120 (141)
T PF00056_consen 81 RKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNP 120 (141)
T ss_dssp SSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSS
T ss_pred ccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCc
Confidence 32 122 122 1 1244455688898888543
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.025 Score=58.32 Aligned_cols=93 Identities=17% Similarity=0.128 Sum_probs=60.5
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC-----cc--------------------ccCCc--e-
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK-----VT--------------------FPSAA--R- 207 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~-----~~--------------------~~~g~--~- 207 (620)
...|..++|+|||+|.+|..+|+.|...|. ++..+|...-... .. ....+ .
T Consensus 27 Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~ 106 (245)
T PRK05690 27 QEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIET 106 (245)
T ss_pred HHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEE
Confidence 357899999999999999999999999998 7888886532111 00 00000 0
Q ss_pred -----ecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEc
Q 007040 208 -----RMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNT 253 (620)
Q Consensus 208 -----~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINv 253 (620)
....+.+++..+|+|+.++ .+.+++..++.......+ -+|..
T Consensus 107 ~~~~i~~~~~~~~~~~~DiVi~~~-D~~~~r~~ln~~~~~~~i---p~v~~ 153 (245)
T PRK05690 107 INARLDDDELAALIAGHDLVLDCT-DNVATRNQLNRACFAAKK---PLVSG 153 (245)
T ss_pred EeccCCHHHHHHHHhcCCEEEecC-CCHHHHHHHHHHHHHhCC---EEEEe
Confidence 0112456677888888776 456677777766555433 35554
|
|
| >TIGR00658 orni_carb_tr ornithine carbamoyltransferase | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.32 Score=51.87 Aligned_cols=66 Identities=14% Similarity=0.119 Sum_probs=51.0
Q ss_pred ecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcc---------ccCC--ceecCCHHhhhcCCcEEEEc
Q 007040 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVT---------FPSA--ARRMDTLNDLLAASDVISLH 225 (620)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~---------~~~g--~~~~~sL~eLL~~sDvVil~ 225 (620)
+.|.+|++||- +++..+++..+..||++|.+..|..-..... ...| +....++++.++.+|+|..-
T Consensus 146 l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~ 223 (304)
T TIGR00658 146 LKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTD 223 (304)
T ss_pred CCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 67899999997 7899999999999999999999865332211 0112 34567899999999999984
|
Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily. |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.021 Score=62.71 Aligned_cols=69 Identities=16% Similarity=0.111 Sum_probs=50.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc-CCc-------eecCCHHhh-hcCCcEEEEcccCChh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP-SAA-------RRMDTLNDL-LAASDVISLHCAVTDE 231 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~-~g~-------~~~~sL~eL-L~~sDvVil~lPlT~~ 231 (620)
++|.|+|+|.+|+.+|+.|...|++|+++|+++........ .+. .....|+++ +..+|+|+++++....
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~ 78 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDET 78 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHH
Confidence 46999999999999999999999999999987643321111 111 122345555 7889999999986544
|
|
| >PRK00779 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.26 Score=52.64 Aligned_cols=66 Identities=12% Similarity=0.101 Sum_probs=51.5
Q ss_pred ecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcc------ccCC--ceecCCHHhhhcCCcEEEEc
Q 007040 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVT------FPSA--ARRMDTLNDLLAASDVISLH 225 (620)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~------~~~g--~~~~~sL~eLL~~sDvVil~ 225 (620)
+.|.+|+|||- +++..+++..+..+|++|.+..|..-..... ...| +....+++++++.+|+|..-
T Consensus 150 l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~ 224 (304)
T PRK00779 150 LKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTD 224 (304)
T ss_pred cCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence 67899999998 8899999999999999999999865322111 1122 34567999999999999974
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.032 Score=57.36 Aligned_cols=39 Identities=13% Similarity=0.059 Sum_probs=34.6
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~ 195 (620)
...|.+.+|.|||.|.+|..+|..|...|. +++.+|...
T Consensus 19 q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 19 QEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred HHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 356899999999999999999999999998 788888764
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.044 Score=59.15 Aligned_cols=66 Identities=15% Similarity=0.187 Sum_probs=44.4
Q ss_pred EEEEEeCChhhHHHHHHHhhC-CCEEEEECCCCCC-CC--------cc----------c-cCCceecCCHHhhhcCCcEE
Q 007040 164 VLGIVGRSASARALATRSLSF-KMSVLYFDVPEGK-GK--------VT----------F-PSAARRMDTLNDLLAASDVI 222 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~Lkaf-G~~V~~~dr~~~~-~~--------~~----------~-~~g~~~~~sL~eLL~~sDvV 222 (620)
+|||+|+|+||+.+++.+... +++|.+....... .. .. + ..+.....++++++..+|+|
T Consensus 3 kVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDVV 82 (341)
T PRK04207 3 KVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADIV 82 (341)
T ss_pred EEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCEE
Confidence 699999999999999998754 7887765432211 00 00 0 01233345678888889999
Q ss_pred EEcccCC
Q 007040 223 SLHCAVT 229 (620)
Q Consensus 223 il~lPlT 229 (620)
+.|.|..
T Consensus 83 IdaT~~~ 89 (341)
T PRK04207 83 VDATPGG 89 (341)
T ss_pred EECCCch
Confidence 9998754
|
|
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.062 Score=57.30 Aligned_cols=88 Identities=14% Similarity=0.151 Sum_probs=60.0
Q ss_pred EEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC----------cc-----------------ccCCce--------
Q 007040 164 VLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK----------VT-----------------FPSAAR-------- 207 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~----------~~-----------------~~~g~~-------- 207 (620)
+|.|||.|.+|..+|+.|...|. ++..+|...-... .. ....+.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 48999999999999999999998 7888885421100 00 000010
Q ss_pred -----------------ecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCC
Q 007040 208 -----------------RMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 208 -----------------~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgR 255 (620)
....+++++.++|+|+.++ .+-+++.+++...... +..+||.+-
T Consensus 81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~t-Dn~esR~L~~~~~~~~---~k~~I~aal 141 (307)
T cd01486 81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLT-DSRESRWLPTLLSAAK---NKLVINAAL 141 (307)
T ss_pred cccccccccccccccccCHHHHHHHHhhCCEEEECC-CCHHHHHHHHHHHHHh---CCcEEEEEe
Confidence 0113678899999999999 6778898887655443 337777654
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.2 Score=56.26 Aligned_cols=184 Identities=16% Similarity=0.135 Sum_probs=101.6
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC----ccccCCceec--CCHHhhhcCCcEEEEc--ccCChh
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK----VTFPSAARRM--DTLNDLLAASDVISLH--CAVTDE 231 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~----~~~~~g~~~~--~sL~eLL~~sDvVil~--lPlT~~ 231 (620)
..+++|.|+|+|..|.++|+.|+..|++|+++|..+.... .....++... .-..+.+..+|+|+.. +|.+..
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p 84 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHP 84 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCCH
Confidence 4599999999999999999999999999999997664411 1112232221 1122567889999985 333322
Q ss_pred --------hHhhcCH-HHhhcc-CCC-cEEEEcCCChhhcHHHHHHHHHc--------CCcceeEeecCCCCCCCCccc-
Q 007040 232 --------TIQIINA-ECLQHI-KPG-AFLVNTGSSQLLDDCAVKQLLID--------GTLAGCALDGAEGPQWMEAWV- 291 (620)
Q Consensus 232 --------T~~lI~~-~~L~~M-K~g-AiLINvgRG~vVDe~AL~~AL~~--------G~I~GAaLDV~E~P~~~~spL- 291 (620)
-..+++. +++-+. .+. .+-|.-+-|+.--..-+...|+. |.|...++|+.++..+.+-..
T Consensus 85 ~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~~~~d~~Vl 164 (448)
T COG0771 85 LVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQAEPADVYVL 164 (448)
T ss_pred HHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhcccCCCCEEEE
Confidence 1112322 233332 133 34444445887766666666654 456667888876511111111
Q ss_pred ----cCCCcE-EEcCCCCCC------cHHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCccCC
Q 007040 292 ----REMPNV-LILPRSADY------SEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTEGCENE 345 (620)
Q Consensus 292 ----~~~pNV-IlTPHiAg~------T~ea~~~~~~~a~enL~~~L~~G~~p~nvVn~~~~y~~~ 345 (620)
|++..+ -+.|++|-. .-+.+..|.+.+...++=| .+....-++|.+..|...
T Consensus 165 ElSSfQL~~~~~~~P~iavilNi~~DHLD~H~s~e~Y~~aK~~i~--~~~~~~~Vin~dd~~~~~ 227 (448)
T COG0771 165 ELSSFQLETTSSLRPEIAVILNISEDHLDRHGSMENYAAAKLRIL--EGQTEVAVINADDAYLKT 227 (448)
T ss_pred EccccccccCccCCccEEEEecCCHHHhhhccCHHHHHHHHHHHH--cCCccEEEEeCCcHHHhh
Confidence 122222 233433322 1223344455555555544 343337788887776444
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.054 Score=54.69 Aligned_cols=38 Identities=13% Similarity=0.212 Sum_probs=34.4
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCC
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVP 194 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~ 194 (620)
...|...+|+|||+|.+|..+|+.|...|. ++..+|..
T Consensus 23 q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 23 LEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 356899999999999999999999999998 59999876
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.085 Score=58.04 Aligned_cols=89 Identities=18% Similarity=0.214 Sum_probs=64.4
Q ss_pred eecCcEEEEEeC----------ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccC
Q 007040 159 RCRGLVLGIVGR----------SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAV 228 (620)
Q Consensus 159 ~L~GktVGIIGl----------G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPl 228 (620)
.+.|++|+|+|+ ..-...+++.|...|++|.+|||........ ......++.+.+..+|+|+++.+.
T Consensus 310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~---~~~~~~~~~~~~~~ad~~v~~t~~ 386 (411)
T TIGR03026 310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVK---GLPLIDDLEEALKGADALVILTDH 386 (411)
T ss_pred cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhh---hcccCCCHHHHHhCCCEEEEecCC
Confidence 478999999998 5578899999999999999999986442211 111246889999999999999986
Q ss_pred ChhhHhhcCHHHhhc-cCCCcEEEEc
Q 007040 229 TDETIQIINAECLQH-IKPGAFLVNT 253 (620)
Q Consensus 229 T~~T~~lI~~~~L~~-MK~gAiLINv 253 (620)
.+ -+ -++-+.+.. |+ ..++|++
T Consensus 387 ~~-~~-~~~~~~~~~~~~-~~~v~D~ 409 (411)
T TIGR03026 387 DE-FK-DLDLEKIKDLMK-GKVVVDT 409 (411)
T ss_pred HH-Hh-ccCHHHHHHhcC-CCEEEeC
Confidence 53 22 234444443 54 5577774
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.045 Score=51.74 Aligned_cols=86 Identities=27% Similarity=0.289 Sum_probs=51.2
Q ss_pred EEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhcc
Q 007040 165 LGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHI 244 (620)
Q Consensus 165 VGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~M 244 (620)
+-|+|.|.+|+++++.++.+|++|+++|+++.. + ..++-+. +.+.. + +. +.+ .+
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~----~--------------~~~~~~~-~~~~~-~---~~--~~~-~~ 54 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPER----F--------------PEADEVI-CIPPD-D---IL--EDL-EI 54 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC-------------------TTSSEEE-CSHHH-H---HH--HHC--S
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccc----c--------------CCCCccE-ecChH-H---HH--hcc-CC
Confidence 468999999999999999999999999988521 1 1333322 22211 1 11 112 45
Q ss_pred CCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEe
Q 007040 245 KPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCAL 278 (620)
Q Consensus 245 K~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaL 278 (620)
.+++.+| +.++.-.|..+|..+|+. .....++
T Consensus 55 ~~~t~Vv-~th~h~~D~~~L~~~l~~-~~~YiG~ 86 (136)
T PF13478_consen 55 DPNTAVV-MTHDHELDAEALEAALAS-PARYIGL 86 (136)
T ss_dssp -TT-EEE---S-CCCHHHHHHHHTTS-S-SEEEE
T ss_pred CCCeEEE-EcCCchhHHHHHHHHHcC-CCCEEEe
Confidence 5666666 788888999888888887 4444444
|
|
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.096 Score=58.19 Aligned_cols=112 Identities=12% Similarity=0.091 Sum_probs=68.7
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEc--ccCC-h----h
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLH--CAVT-D----E 231 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~--lPlT-~----~ 231 (620)
.+.|++|.|||+|.+|.++|+.|+..|+.|.++|............|+.....-.+-+..+|+|+.. +|.+ + .
T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~ 85 (460)
T PRK01390 6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWV 85 (460)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHH
Confidence 4678999999999999999999999999999999764322111112322111111235679988863 2221 1 1
Q ss_pred ---hHh----hcCH-HHhhc-c-----CCCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 232 ---TIQ----IINA-ECLQH-I-----KPGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 232 ---T~~----lI~~-~~L~~-M-----K~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
++. ++.. +.+.. + +...+-|.-+.|+.--..-|...|+.
T Consensus 86 v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~ 138 (460)
T PRK01390 86 VDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILRE 138 (460)
T ss_pred HHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHh
Confidence 111 1332 22222 2 33455666677998888888888875
|
|
| >PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.13 Score=54.93 Aligned_cols=65 Identities=22% Similarity=0.247 Sum_probs=51.6
Q ss_pred ecCcEEEEEeC---ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcc
Q 007040 160 CRGLVLGIVGR---SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 160 L~GktVGIIGl---G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~l 226 (620)
+.|++|++||- +++..+++..+..||++|.+..|..-.... .. .....+++++.++.+|||....
T Consensus 154 l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~-~~-~~~~~~d~~ea~~~aDvvyt~~ 221 (305)
T PRK00856 154 LEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEG-MP-EYGVHTDLDEVIEDADVVMMLR 221 (305)
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCccc-cc-ceEEECCHHHHhCCCCEEEECC
Confidence 67999999988 589999999999999999999986532221 11 1345679999999999998743
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.028 Score=60.16 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=34.1
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGK 197 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~ 197 (620)
.|+.+||+|+|.+|.--.+.++|||++|+++|+....
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~k 217 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKK 217 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchh
Confidence 7999999999999999999999999999999988644
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.11 Score=58.66 Aligned_cols=103 Identities=11% Similarity=0.153 Sum_probs=71.7
Q ss_pred eecCcEEEEEeC----------ChhhHHHHHHHhhCCCEEEEECCCCCCCCc--cc--------------------cCCc
Q 007040 159 RCRGLVLGIVGR----------SASARALATRSLSFKMSVLYFDVPEGKGKV--TF--------------------PSAA 206 (620)
Q Consensus 159 ~L~GktVGIIGl----------G~IG~~vA~~LkafG~~V~~~dr~~~~~~~--~~--------------------~~g~ 206 (620)
.+.|++|+|+|+ ..-...+++.|...|.+|.+|||....... .+ ....
T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (473)
T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV 400 (473)
T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence 478999999998 567889999999999999999998533211 01 0012
Q ss_pred eecCCHHhhhcCCcEEEEcccCChhhHhhcCHHH-hhccCCCcEEEEcCCChhhcHHHHH
Q 007040 207 RRMDTLNDLLAASDVISLHCAVTDETIQIINAEC-LQHIKPGAFLVNTGSSQLLDDCAVK 265 (620)
Q Consensus 207 ~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~-L~~MK~gAiLINvgRG~vVDe~AL~ 265 (620)
...+++.+.++.||+|+++....+ -+. ++-+. ...|++..++||. |+ ++|.+.+.
T Consensus 401 ~~~~~~~~a~~~aD~vvi~t~~~e-f~~-l~~~~~~~~m~~~~~viD~-rn-~l~~~~~~ 456 (473)
T PLN02353 401 SVVWDAYEATKGAHGICILTEWDE-FKT-LDYQKIYDNMQKPAFVFDG-RN-VLDHEKLR 456 (473)
T ss_pred eeeCCHHHHhcCCCEEEECCCChH-hcc-cCHHHHHHhccCCCEEEEC-CC-CCCHHHHH
Confidence 345567789999999999998653 222 34333 4567766688884 44 45665554
|
|
| >PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.032 Score=57.61 Aligned_cols=108 Identities=18% Similarity=0.188 Sum_probs=68.9
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEE--------CCCCCCCC-------------cccc---C-CceecCCHH
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYF--------DVPEGKGK-------------VTFP---S-AARRMDTLN 213 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~--------dr~~~~~~-------------~~~~---~-g~~~~~sL~ 213 (620)
.+.|+++.|-|+|++|+.+|+.|...|++|+++ |+..-... ..+. . +.... +-+
T Consensus 29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~-~~~ 107 (244)
T PF00208_consen 29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYI-PND 107 (244)
T ss_dssp SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEE-CHH
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEe-ccc
Confidence 479999999999999999999999999999887 44321111 0010 0 11111 221
Q ss_pred -hhh-cCCcEEEEcccCChhhHhhcCHHHhh-ccCCCcEEE-EcCCChhhcHHHHHHHHHcCCcc
Q 007040 214 -DLL-AASDVISLHCAVTDETIQIINAECLQ-HIKPGAFLV-NTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 214 -eLL-~~sDvVil~lPlT~~T~~lI~~~~L~-~MK~gAiLI-NvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
+++ ..|||++.|. ..+.|+.+... .++.++-+| -.+-+++- .++.. .|++..|.
T Consensus 108 ~~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~t-~~a~~-~L~~rGI~ 165 (244)
T PF00208_consen 108 DEILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPLT-PEADE-ILRERGIL 165 (244)
T ss_dssp CHGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSBS-HHHHH-HHHHTT-E
T ss_pred cccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhcc-HHHHH-HHHHCCCE
Confidence 444 5799999884 34578888777 776665444 45556654 44444 77777765
|
They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C .... |
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.087 Score=50.16 Aligned_cols=65 Identities=17% Similarity=0.143 Sum_probs=49.1
Q ss_pred EEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCc-------eecCCHHhhhcCCcEEEEcccCChh
Q 007040 165 LGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA-------RRMDTLNDLLAASDVISLHCAVTDE 231 (620)
Q Consensus 165 VGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~-------~~~~sL~eLL~~sDvVil~lPlT~~ 231 (620)
|.|+| .|.+|+.+++.|...|++|+++.|++..... ..++ ...+++.+.+..+|+|+.+++.+..
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~ 73 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPK 73 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTT
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhhhcc
Confidence 57898 5999999999999999999999998754321 1111 1223466778899999999986544
|
... |
| >TIGR00670 asp_carb_tr aspartate carbamoyltransferase | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.18 Score=53.80 Aligned_cols=66 Identities=20% Similarity=0.335 Sum_probs=51.3
Q ss_pred ecCcEEEEEeCC---hhhHHHHHHHhhCCCEEEEECCCCCCCCccc-----cCC--ceecCCHHhhhcCCcEEEEc
Q 007040 160 CRGLVLGIVGRS---ASARALATRSLSFKMSVLYFDVPEGKGKVTF-----PSA--ARRMDTLNDLLAASDVISLH 225 (620)
Q Consensus 160 L~GktVGIIGlG---~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~-----~~g--~~~~~sL~eLL~~sDvVil~ 225 (620)
+.|.+|++||-| ++..+++..+..||++|.+..|..-.....+ ..| +....++++.++.+|||...
T Consensus 148 l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~ 223 (301)
T TIGR00670 148 LDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVT 223 (301)
T ss_pred CCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEEC
Confidence 689999999995 9999999999999999999998653221111 112 23467899999999999873
|
Ornithine carbamoyltransferases are in the same superfamily and form an outgroup. |
| >PRK01713 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.48 Score=51.28 Aligned_cols=95 Identities=9% Similarity=0.053 Sum_probs=64.8
Q ss_pred ecCcEEEEEeCC--hhhHHHHHHHhhCCCEEEEECCCCCCCCc-------c--ccCC--ceecCCHHhhhcCCcEEEEcc
Q 007040 160 CRGLVLGIVGRS--ASARALATRSLSFKMSVLYFDVPEGKGKV-------T--FPSA--ARRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 160 L~GktVGIIGlG--~IG~~vA~~LkafG~~V~~~dr~~~~~~~-------~--~~~g--~~~~~sL~eLL~~sDvVil~l 226 (620)
+.|.+|++||=+ ++..+++..+..||++|.++.|..-.... . ...| +...+++++.++.+|||..-+
T Consensus 154 l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~~ 233 (334)
T PRK01713 154 LSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTDV 233 (334)
T ss_pred cCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcc
Confidence 678999999986 67888899999999999999986432211 0 0112 345689999999999999732
Q ss_pred ----cCCh---hhH------hhcCHHHhhcc-CCCcEEEEcC
Q 007040 227 ----AVTD---ETI------QIINAECLQHI-KPGAFLVNTG 254 (620)
Q Consensus 227 ----PlT~---~T~------~lI~~~~L~~M-K~gAiLINvg 254 (620)
.... +.+ -.|+.+.++.. |++++|.-+.
T Consensus 234 w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~l 275 (334)
T PRK01713 234 WVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCL 275 (334)
T ss_pred eeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCC
Confidence 1100 111 12577777775 6777777653
|
|
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.056 Score=58.66 Aligned_cols=63 Identities=21% Similarity=0.294 Sum_probs=46.3
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCce-----ecCCHHhhhcCCcEEEE
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR-----RMDTLNDLLAASDVISL 224 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~-----~~~sL~eLL~~sDvVil 224 (620)
.++|||||-|..|+.++..++.+|++|+++|+.+........+... ..+.+.+++..+|+|+.
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence 3689999999999999999999999999999876443211221111 12246778889999864
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.035 Score=62.56 Aligned_cols=111 Identities=12% Similarity=0.092 Sum_probs=68.2
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceec--CCHHhhhcCCcEEEEcccCChhhH----
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRM--DTLNDLLAASDVISLHCAVTDETI---- 233 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~--~sL~eLL~~sDvVil~lPlT~~T~---- 233 (620)
+.|+++.|+|+|.+|.+.++.|+..|++|+++|............++... ....+.+..+|+|+..-...+..-
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~~~ 89 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVLAA 89 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHHHH
Confidence 47889999999999999999999999999999965432211111233221 123455678998887653332211
Q ss_pred ------hhcCHHHhh-cc-------CC-CcEEEEcCCChhhcHHHHHHHHHc
Q 007040 234 ------QIINAECLQ-HI-------KP-GAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 234 ------~lI~~~~L~-~M-------K~-gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
.+++.-.|. .+ ++ ..+-|--+-|+.--..-+...|+.
T Consensus 90 a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~ 141 (488)
T PRK03369 90 AAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIA 141 (488)
T ss_pred HHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 123332222 11 12 234454456888777777777765
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.052 Score=58.65 Aligned_cols=39 Identities=21% Similarity=0.101 Sum_probs=35.5
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~ 195 (620)
...|..++|.|||.|.+|..+|..|...|. +|..+|...
T Consensus 19 Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 19 QQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred HHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 457899999999999999999999999999 899999753
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.035 Score=58.62 Aligned_cols=91 Identities=16% Similarity=0.179 Sum_probs=58.2
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcc---ccC-C----ceecCCHHhhhcCCcEEEEcccCCh
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVT---FPS-A----ARRMDTLNDLLAASDVISLHCAVTD 230 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~---~~~-g----~~~~~sL~eLL~~sDvVil~lPlT~ 230 (620)
..|+++.|+|.|..+++++..|+..|+ +|++++|+....... +.. + .....+++.+ .++|+||+++|..-
T Consensus 124 ~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~-~~~dliINaTp~Gm 202 (283)
T COG0169 124 VTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGL-EEADLLINATPVGM 202 (283)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccc-cccCEEEECCCCCC
Confidence 578999999999999999999999996 899999987543311 111 1 1111222222 26999999999763
Q ss_pred hhH--h-hcCHHHhhccCCCcEEEEcC
Q 007040 231 ETI--Q-IINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 231 ~T~--~-lI~~~~L~~MK~gAiLINvg 254 (620)
.-. . +++ ...++++.++.++-
T Consensus 203 ~~~~~~~~~~---~~~l~~~~~v~D~v 226 (283)
T COG0169 203 AGPEGDSPVP---AELLPKGAIVYDVV 226 (283)
T ss_pred CCCCCCCCCc---HHhcCcCCEEEEec
Confidence 221 1 222 34455555555543
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.14 Score=54.22 Aligned_cols=36 Identities=11% Similarity=0.301 Sum_probs=33.1
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~ 195 (620)
+.|+++.|||.|..+++++..|...|+ +|++++|+.
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~ 158 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD 158 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 578899999999999999999998897 899999985
|
|
| >PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.13 Score=55.08 Aligned_cols=65 Identities=18% Similarity=0.182 Sum_probs=51.2
Q ss_pred ecCcEEEEEeC---ChhhHHHHHHHhhCCC-EEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEE
Q 007040 160 CRGLVLGIVGR---SASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISL 224 (620)
Q Consensus 160 L~GktVGIIGl---G~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil 224 (620)
+.|.+|++||- +++..+++..+..||+ +|.+..|..-.........+....++++.++.+|||..
T Consensus 155 l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~ 223 (310)
T PRK13814 155 WNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVT 223 (310)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEE
Confidence 67899999998 5999999999999999 99999986532211111234556899999999999986
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.087 Score=57.93 Aligned_cols=89 Identities=15% Similarity=0.188 Sum_probs=63.9
Q ss_pred ecCcEEEEEeCC----------hhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCC
Q 007040 160 CRGLVLGIVGRS----------ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 160 L~GktVGIIGlG----------~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
|.|++|||+|+- .-...++.+|+..|.+|.+|||-..........++....++.++++.||+++++....
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~tew~ 387 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTEWD 387 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEeccHH
Confidence 889999999984 4578899999999999999999764433111114567789999999999999987633
Q ss_pred hhhHhhcCHHHhhccCCCcEEEE
Q 007040 230 DETIQIINAECLQHIKPGAFLVN 252 (620)
Q Consensus 230 ~~T~~lI~~~~L~~MK~gAiLIN 252 (620)
+-+.+ +-+.+ .|| +.++|+
T Consensus 388 -ef~~~-d~~~~-~m~-~~~v~D 406 (414)
T COG1004 388 -EFRDL-DFEKL-LMK-TPVVID 406 (414)
T ss_pred -HHhcc-Chhhh-hcc-CCEEEe
Confidence 22222 33333 565 556655
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.069 Score=56.59 Aligned_cols=39 Identities=13% Similarity=0.076 Sum_probs=34.6
Q ss_pred cceeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCC
Q 007040 156 GMRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVP 194 (620)
Q Consensus 156 ~~~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~ 194 (620)
+...|+..+|.|||+|.+|..+|..|...|. ++..+|..
T Consensus 21 ~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 21 EQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred HHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3467999999999999999999999999998 78888865
|
|
| >COG5322 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.053 Score=56.88 Aligned_cols=100 Identities=18% Similarity=0.160 Sum_probs=67.6
Q ss_pred eeecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCC------ccccCCceecCCHHhhhcCCcEEEEcccCCh
Q 007040 158 RRCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGK------VTFPSAARRMDTLNDLLAASDVISLHCAVTD 230 (620)
Q Consensus 158 ~~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~------~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~ 230 (620)
.+|+..+++|+|+ |.||..+|+.|.+.+......-|...... ...+.+....-+++..+.+.|+++-.....
T Consensus 163 idlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs~~- 241 (351)
T COG5322 163 IDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVASMP- 241 (351)
T ss_pred cCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEeecC-
Confidence 5789999999996 99999999999999887766664432111 011122333346666666777766555433
Q ss_pred hhHhhcCHHHhhccCCCcEEEEcCCChhhcHH
Q 007040 231 ETIQIINAECLQHIKPGAFLVNTGSSQLLDDC 262 (620)
Q Consensus 231 ~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~ 262 (620)
+-..|+. .++|||+++|+-|+..=+|+.
T Consensus 242 -~g~~I~p---q~lkpg~~ivD~g~P~dvd~~ 269 (351)
T COG5322 242 -KGVEIFP---QHLKPGCLIVDGGYPKDVDTS 269 (351)
T ss_pred -CCceech---hhccCCeEEEcCCcCcccccc
Confidence 3356665 458999999999987755543
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.023 Score=50.61 Aligned_cols=86 Identities=13% Similarity=0.180 Sum_probs=55.3
Q ss_pred EEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCce-------ecCCHHhh-hcCCcEEEEcccCChhhHhhc
Q 007040 165 LGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR-------RMDTLNDL-LAASDVISLHCAVTDETIQII 236 (620)
Q Consensus 165 VGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~-------~~~sL~eL-L~~sDvVil~lPlT~~T~~lI 236 (620)
|.|+|+|.+|+.+++.|+..+.+|+++|..+.........+.. ....|.++ +.++|.|+++.+....+ +.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n--~~ 78 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEEN--LL 78 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHH--HH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHH--HH
Confidence 5699999999999999999777999999887443322222211 11223332 67899999999865443 33
Q ss_pred CHHHhhccCCCcEEEE
Q 007040 237 NAECLQHIKPGAFLVN 252 (620)
Q Consensus 237 ~~~~L~~MK~gAiLIN 252 (620)
-...+..+.+...+|-
T Consensus 79 ~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 79 IALLARELNPDIRIIA 94 (116)
T ss_dssp HHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHCCCCeEEE
Confidence 3445566656555553
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.091 Score=56.72 Aligned_cols=97 Identities=21% Similarity=0.297 Sum_probs=58.4
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhC-CCEEEE-ECCCCCCCCcc---cc--CC--ceecCCHHh-hhcCCcEEEEcccCChh
Q 007040 163 LVLGIVGR-SASARALATRSLSF-KMSVLY-FDVPEGKGKVT---FP--SA--ARRMDTLND-LLAASDVISLHCAVTDE 231 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~Lkaf-G~~V~~-~dr~~~~~~~~---~~--~g--~~~~~sL~e-LL~~sDvVil~lPlT~~ 231 (620)
++|+|||. |.+|+.+++.|..+ ++++.. +++.. ..... .. .+ .....++++ .+..+|+|++|+|....
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~-~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~ 81 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSS-AGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVS 81 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccc-cCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHH
Confidence 57999996 99999999999977 678755 45322 21100 00 00 011223333 45789999999996422
Q ss_pred hHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHH
Q 007040 232 TIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVK 265 (620)
Q Consensus 232 T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~ 265 (620)
..++ ...++.|..+|+.+-.--.+..+++
T Consensus 82 -~~~v----~~a~~aG~~VID~S~~fR~~~~~~~ 110 (343)
T PRK00436 82 -MDLA----PQLLEAGVKVIDLSADFRLKDPEVY 110 (343)
T ss_pred -HHHH----HHHHhCCCEEEECCcccCCCCchhh
Confidence 2221 2223579999999865545443333
|
|
| >PRK02255 putrescine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.16 Score=55.08 Aligned_cols=65 Identities=12% Similarity=0.085 Sum_probs=50.0
Q ss_pred ecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccc---------cCC--ceecCCHHhhhcCCcEEEE
Q 007040 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTF---------PSA--ARRMDTLNDLLAASDVISL 224 (620)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~---------~~g--~~~~~sL~eLL~~sDvVil 224 (620)
+.|.+|+|||- .++..+++..+..+|++|.++.|..-...... ..| +....++++.++.+|||..
T Consensus 152 l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~ 228 (338)
T PRK02255 152 LEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYT 228 (338)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEE
Confidence 68999999997 67888888999999999999998642221101 012 3456799999999999998
|
|
| >TIGR03316 ygeW probable carbamoyltransferase YgeW | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.47 Score=51.84 Aligned_cols=68 Identities=7% Similarity=0.065 Sum_probs=48.9
Q ss_pred eecCcEEEEEeCC--------hhhHHHHHHHhhCCCEEEEECCCCCCCCcc---------ccCC--ceecCCHHhhhcCC
Q 007040 159 RCRGLVLGIVGRS--------ASARALATRSLSFKMSVLYFDVPEGKGKVT---------FPSA--ARRMDTLNDLLAAS 219 (620)
Q Consensus 159 ~L~GktVGIIGlG--------~IG~~vA~~LkafG~~V~~~dr~~~~~~~~---------~~~g--~~~~~sL~eLL~~s 219 (620)
.+.|++|+|+|.| ++..+++..+..||++|.+..|..-..... ...| +....++++.++.+
T Consensus 167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~a 246 (357)
T TIGR03316 167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDA 246 (357)
T ss_pred ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 3689999999853 344778888999999999999864221110 0122 33568999999999
Q ss_pred cEEEEcc
Q 007040 220 DVISLHC 226 (620)
Q Consensus 220 DvVil~l 226 (620)
|||..-.
T Consensus 247 Dvvyt~~ 253 (357)
T TIGR03316 247 DIVYPKS 253 (357)
T ss_pred CEEEECC
Confidence 9999863
|
Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism. |
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.024 Score=61.41 Aligned_cols=84 Identities=18% Similarity=0.167 Sum_probs=52.9
Q ss_pred EEEEeCChhhHHHHHHHhhCC-C-EEEEECCCCCCCCccc----cCCc-------eecCCHHhhhcCCcEEEEcccCChh
Q 007040 165 LGIVGRSASARALATRSLSFK-M-SVLYFDVPEGKGKVTF----PSAA-------RRMDTLNDLLAASDVISLHCAVTDE 231 (620)
Q Consensus 165 VGIIGlG~IG~~vA~~LkafG-~-~V~~~dr~~~~~~~~~----~~g~-------~~~~sL~eLL~~sDvVil~lPlT~~ 231 (620)
|+|||.|.+|+.+++.|...+ + +|++.|++........ ...+ ....+|.++++++|+|+.|+|..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-- 78 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-- 78 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG--
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc--
Confidence 789999999999999999776 5 8999999875422111 0011 11224778899999999999744
Q ss_pred hHhhcCHHHh-hccCCCcEEEEcC
Q 007040 232 TIQIINAECL-QHIKPGAFLVNTG 254 (620)
Q Consensus 232 T~~lI~~~~L-~~MK~gAiLINvg 254 (620)
++...+ ..++.|.-.||++
T Consensus 79 ----~~~~v~~~~i~~g~~yvD~~ 98 (386)
T PF03435_consen 79 ----FGEPVARACIEAGVHYVDTS 98 (386)
T ss_dssp ----GHHHHHHHHHHHT-EEEESS
T ss_pred ----hhHHHHHHHHHhCCCeeccc
Confidence 222222 2345677788843
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK02102 ornithine carbamoyltransferase; Validated | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.4 Score=51.84 Aligned_cols=66 Identities=20% Similarity=0.195 Sum_probs=51.1
Q ss_pred ecCcEEEEEeCC--hhhHHHHHHHhhCCCEEEEECCCCCCCCccc---------cCC--ceecCCHHhhhcCCcEEEEc
Q 007040 160 CRGLVLGIVGRS--ASARALATRSLSFKMSVLYFDVPEGKGKVTF---------PSA--ARRMDTLNDLLAASDVISLH 225 (620)
Q Consensus 160 L~GktVGIIGlG--~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~---------~~g--~~~~~sL~eLL~~sDvVil~ 225 (620)
+.|.+|++||-+ ++..+++..+..||++|.+..|..-.....+ ..| +...++++++++.+|||..-
T Consensus 153 l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 231 (331)
T PRK02102 153 LKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTD 231 (331)
T ss_pred CCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 689999999997 8899999999999999999998653222100 112 33467899999999999984
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.17 Score=56.12 Aligned_cols=71 Identities=14% Similarity=0.173 Sum_probs=54.8
Q ss_pred eeecCcEEEEEeC----------ChhhHHHHHHHhhCC-CEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcc
Q 007040 158 RRCRGLVLGIVGR----------SASARALATRSLSFK-MSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 158 ~~L~GktVGIIGl----------G~IG~~vA~~LkafG-~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~l 226 (620)
.++.|++|+|+|+ ..-+..+++.|...| .+|.+|||........+.. .....++++.+..||+|+++.
T Consensus 316 ~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~-~~~~~~~~~~~~~ad~vvi~t 394 (415)
T PRK11064 316 KRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDG-LVTLVSLDEALATADVLVMLV 394 (415)
T ss_pred cCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccC-ceeeCCHHHHHhCCCEEEECC
Confidence 3478999999998 557889999999996 9999999985432211111 223478999999999999999
Q ss_pred cCC
Q 007040 227 AVT 229 (620)
Q Consensus 227 PlT 229 (620)
+..
T Consensus 395 ~~~ 397 (415)
T PRK11064 395 DHS 397 (415)
T ss_pred CCH
Confidence 866
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.13 Score=54.78 Aligned_cols=95 Identities=13% Similarity=0.156 Sum_probs=59.6
Q ss_pred cEEEEEeC-ChhhHHHHHHHh---hCCCEEEEECCCCCCCC--ccccC-C----cee--cCCHHhhhcCCcEEEEcccCC
Q 007040 163 LVLGIVGR-SASARALATRSL---SFKMSVLYFDVPEGKGK--VTFPS-A----ARR--MDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~Lk---afG~~V~~~dr~~~~~~--~~~~~-g----~~~--~~sL~eLL~~sDvVil~lPlT 229 (620)
++|+|||. |.||..+|..|. ..+..+..+|++..... ..+.. . +.. .+++.+.++.+|+|++++-..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~ 80 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA 80 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence 57999999 999999998773 45668999998653211 11111 1 111 246667889999999988652
Q ss_pred hh---hH-hhc------CHH---HhhccCCCcEEEEcCCCh
Q 007040 230 DE---TI-QII------NAE---CLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 230 ~~---T~-~lI------~~~---~L~~MK~gAiLINvgRG~ 257 (620)
.. ++ .++ -.+ .+....+.+++|+++-.-
T Consensus 81 ~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~ 121 (312)
T PRK05086 81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV 121 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 21 11 111 112 334446788999987654
|
|
| >cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1 | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.25 Score=52.19 Aligned_cols=164 Identities=12% Similarity=0.096 Sum_probs=106.1
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhC----CC-------EEEEECCCCCC----CC-----ccccCCce--ecCCHHhhh
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSF----KM-------SVLYFDVPEGK----GK-----VTFPSAAR--RMDTLNDLL 216 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~Lkaf----G~-------~V~~~dr~~~~----~~-----~~~~~g~~--~~~sL~eLL 216 (620)
.|.+.+|.|+|.|..|-.+|+.+... |+ +++.+|+..-- .. ..+..... ...+|.|++
T Consensus 22 ~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i 101 (279)
T cd05312 22 PLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVV 101 (279)
T ss_pred ChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHHH
Confidence 47889999999999999999999877 87 89999987411 00 01111111 235899999
Q ss_pred c--CCcEEEEcccCChhhHhhcCHHHhhccC---CCcEEEEcCCChhhcHHHHHHHHH--cCC-cceeEeecCCCCCCC-
Q 007040 217 A--ASDVISLHCAVTDETIQIINAECLQHIK---PGAFLVNTGSSQLLDDCAVKQLLI--DGT-LAGCALDGAEGPQWM- 287 (620)
Q Consensus 217 ~--~sDvVil~lPlT~~T~~lI~~~~L~~MK---~gAiLINvgRG~vVDe~AL~~AL~--~G~-I~GAaLDV~E~P~~~- 287 (620)
+ +.|+++=+-- .-++|+++.++.|. +..++.=.|.....-|..-.++.+ +|+ |.+.+.- | ||..
T Consensus 102 ~~v~ptvlIG~S~----~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~G~ai~ATGsP-f--~pv~~ 174 (279)
T cd05312 102 KAVKPTVLIGLSG----VGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTDGRALFASGSP-F--PPVEY 174 (279)
T ss_pred HhcCCCEEEEeCC----CCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhcCCEEEEeCCC-C--CCeee
Confidence 9 8899986432 23799999999998 899999999876633433333333 344 4432210 0 1100
Q ss_pred ---CccccCCCcEEEcCCCCCCc-----HHHHHHHHHHHHHHHHHHHHcC
Q 007040 288 ---EAWVREMPNVLILPRSADYS-----EEVWMEIRDKAISVLQTFFFDG 329 (620)
Q Consensus 288 ---~spL~~~pNVIlTPHiAg~T-----~ea~~~~~~~a~enL~~~L~~G 329 (620)
...--+..|+++=|=++-.. ...-++|...+++.|..+....
T Consensus 175 ~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~~~~ 224 (279)
T cd05312 175 NGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVTDE 224 (279)
T ss_pred CCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhCCcc
Confidence 00112567899999765432 2234778888888888865333
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.17 Score=55.00 Aligned_cols=92 Identities=18% Similarity=0.263 Sum_probs=59.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC---------ccccCCcee--cCCHHhhhcCCcEEEEcccCC
Q 007040 163 LVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK---------VTFPSAARR--MDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~--~V~~~dr~~~~~~---------~~~~~g~~~--~~sL~eLL~~sDvVil~lPlT 229 (620)
++|+|||.|.+|..+|-.|...|. ++..+|....... ..+...... ..+.+ .+++||+|+++.-..
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~-~~~daDiVVitAG~~ 116 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYA-VTAGSDLCIVTAGAR 116 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHH-HhCCCCEEEECCCCC
Confidence 699999999999999999986665 7999998764322 001111111 12444 488999999985432
Q ss_pred h---hhH-hhc--C-------HHHhhccCCCcEEEEcCC
Q 007040 230 D---ETI-QII--N-------AECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 230 ~---~T~-~lI--~-------~~~L~~MK~gAiLINvgR 255 (620)
. .|+ .++ | ...+....|.+++|+++-
T Consensus 117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtN 155 (350)
T PLN02602 117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSN 155 (350)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 1 233 122 1 124455678999999883
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.22 Score=55.01 Aligned_cols=111 Identities=14% Similarity=0.127 Sum_probs=70.0
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC----ccc-cCCc--eecCCHHhhhcCCcEEEEcccCChhh
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK----VTF-PSAA--RRMDTLNDLLAASDVISLHCAVTDET 232 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~----~~~-~~g~--~~~~sL~eLL~~sDvVil~lPlT~~T 232 (620)
+.++++.|+|.|.+|.++|+.|...|++|+++|+...... ... ..+. ...+..++....+|+|+++.-..+..
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~~ 82 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLDS 82 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCCC
Confidence 6789999999999999999999999999999998752211 000 1122 22233445667899999876543332
Q ss_pred Hhh----------cC-HHHhhc-cCCCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 233 IQI----------IN-AECLQH-IKPGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 233 ~~l----------I~-~~~L~~-MK~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
..+ +. .+.+.. .+...+-|--+.|+.--..-|...|..
T Consensus 83 ~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~ 132 (450)
T PRK14106 83 PPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN 132 (450)
T ss_pred HHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 211 11 122222 232234444456888888878888865
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.08 Score=54.04 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=34.7
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~ 195 (620)
...|.+++|.|||+|.+|..+|..|...|. ++..+|...
T Consensus 22 q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 22 QEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred HHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 457899999999999999999999999998 788888653
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.049 Score=62.22 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=34.7
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
.+.++++.|+|.|.+|+++|..|...|++|++++|+..
T Consensus 376 ~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e 413 (529)
T PLN02520 376 PLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYE 413 (529)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 46789999999999999999999999999999998753
|
|
| >PLN02527 aspartate carbamoyltransferase | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.19 Score=53.61 Aligned_cols=67 Identities=18% Similarity=0.237 Sum_probs=49.9
Q ss_pred ecCcEEEEEeCC---hhhHHHHHHHhhC-CCEEEEECCCCCCCCccc-----cCC--ceecCCHHhhhcCCcEEEEcc
Q 007040 160 CRGLVLGIVGRS---ASARALATRSLSF-KMSVLYFDVPEGKGKVTF-----PSA--ARRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 160 L~GktVGIIGlG---~IG~~vA~~Lkaf-G~~V~~~dr~~~~~~~~~-----~~g--~~~~~sL~eLL~~sDvVil~l 226 (620)
+.|.+|+|||-+ ++..+++..+..| |++|.+..|..-.....+ ..| +....++++.++.||||....
T Consensus 149 l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~ 226 (306)
T PLN02527 149 LDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTR 226 (306)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECC
Confidence 679999999976 6889999988887 999999998653221111 112 234678999999999999843
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.06 Score=65.82 Aligned_cols=69 Identities=17% Similarity=0.150 Sum_probs=47.2
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhC-CCE-------------EEEECCCCCCCCcccc--CC---cee-cCCHHhh---hc
Q 007040 161 RGLVLGIVGRSASARALATRSLSF-KMS-------------VLYFDVPEGKGKVTFP--SA---ARR-MDTLNDL---LA 217 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lkaf-G~~-------------V~~~dr~~~~~~~~~~--~g---~~~-~~sL~eL---L~ 217 (620)
+.++|+|||.|.||+.+|+.|... +++ |.+.|++......... .+ +.. +.+.+++ ++
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 477899999999999999999754 333 8889988644331110 01 111 3344444 46
Q ss_pred CCcEEEEcccCC
Q 007040 218 ASDVISLHCAVT 229 (620)
Q Consensus 218 ~sDvVil~lPlT 229 (620)
.+|+|++++|..
T Consensus 648 ~~DaVIsalP~~ 659 (1042)
T PLN02819 648 QVDVVISLLPAS 659 (1042)
T ss_pred CCCEEEECCCch
Confidence 899999999964
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.11 Score=50.69 Aligned_cols=32 Identities=16% Similarity=0.166 Sum_probs=28.8
Q ss_pred EEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 007040 164 VLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~ 195 (620)
+|+|||.|.+|..+|+.|...|+ ++..+|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 48999999999999999999999 599998764
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PTZ00079 NADP-specific glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.57 Score=52.70 Aligned_cols=157 Identities=17% Similarity=0.091 Sum_probs=88.0
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCCEEE-EECCCC-------CCCC----------------ccccC---CceecC
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVL-YFDVPE-------GKGK----------------VTFPS---AARRMD 210 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~-~~dr~~-------~~~~----------------~~~~~---g~~~~~ 210 (620)
.++.|++|.|=|+|++|+.+|+.|..+|++|+ +.|.+. -..+ ..+.. +....
T Consensus 233 ~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~- 311 (454)
T PTZ00079 233 DSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV- 311 (454)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe-
Confidence 46899999999999999999999999999999 445541 0000 00100 11222
Q ss_pred CHHhhh-cCCcEEEEcccCChhhHhhcCHHHhhcc-CCCcEEE-EcCCChhhcHHHHHHHHHcCCcceeEeecCCC-CCC
Q 007040 211 TLNDLL-AASDVISLHCAVTDETIQIINAECLQHI-KPGAFLV-NTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQW 286 (620)
Q Consensus 211 sL~eLL-~~sDvVil~lPlT~~T~~lI~~~~L~~M-K~gAiLI-NvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~-P~~ 286 (620)
+-++++ -.|||.+-|. +.+.|+.+....+ +.++.+| --+-+++-. + -.+.|.+..|. .+=|..-+ --.
T Consensus 312 ~~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~-e-A~~~L~~~GI~-~~PD~~aNAGGV 383 (454)
T PTZ00079 312 PGKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPTTI-E-ATHLFKKNGVI-FCPGKAANAGGV 383 (454)
T ss_pred CCcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCCCH-H-HHHHHHHCCcE-EEChhhhcCCCe
Confidence 222332 3688888554 6678888777755 4445444 445565544 3 34566666654 23333221 000
Q ss_pred CCccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHH
Q 007040 287 MEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFF 326 (620)
Q Consensus 287 ~~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L 326 (620)
.-+-|--..|.. +..|..++...++.+++.+...+.+
T Consensus 384 ~vS~~E~~Qn~~---~~~W~~eeV~~~L~~~M~~~~~~~~ 420 (454)
T PTZ00079 384 AISGLEMSQNAA---RLQWTAEEVDEKLREIMKSIFEACV 420 (454)
T ss_pred eeehHHhhhhhc---ccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 001111112221 5666667777777766666555544
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.098 Score=57.22 Aligned_cols=38 Identities=11% Similarity=0.071 Sum_probs=34.9
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCC
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVP 194 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~ 194 (620)
...|.+.+|.|||+|.+|..+|..|...|. ++..+|..
T Consensus 36 q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 36 QERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred HHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 467899999999999999999999999998 89999876
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.31 Score=54.56 Aligned_cols=107 Identities=9% Similarity=0.137 Sum_probs=75.2
Q ss_pred ecCcEEEEEeC----ChhhHHHHHHHhhCCC--EEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhH
Q 007040 160 CRGLVLGIVGR----SASARALATRSLSFKM--SVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI 233 (620)
Q Consensus 160 L~GktVGIIGl----G~IG~~vA~~LkafG~--~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~ 233 (620)
++-++|.|||. |.+|..+.+.|+..|+ +|+.++|.... -.|...+.+++++-...|++++++|.. .+.
T Consensus 5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~-----i~G~~~~~sl~~lp~~~Dlavi~vp~~-~~~ 78 (447)
T TIGR02717 5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGE-----ILGVKAYPSVLEIPDPVDLAVIVVPAK-YVP 78 (447)
T ss_pred cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCc-----cCCccccCCHHHCCCCCCEEEEecCHH-HHH
Confidence 46678999999 8899999999999887 79999987532 135566778999988899999999943 334
Q ss_pred hhcCHHHhhccCC-CcEEEEcCCCh-----hhcHHHHHHHHHcCCcc
Q 007040 234 QIINAECLQHIKP-GAFLVNTGSSQ-----LLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 234 ~lI~~~~L~~MK~-gAiLINvgRG~-----vVDe~AL~~AL~~G~I~ 274 (620)
.++. +..+ ..- .+++|..|-++ ...+++|.+..+.+.+.
T Consensus 79 ~~l~-e~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~gir 123 (447)
T TIGR02717 79 QVVE-ECGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMR 123 (447)
T ss_pred HHHH-HHHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCE
Confidence 4443 2333 333 44454443333 23467788888887665
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.13 Score=54.35 Aligned_cols=113 Identities=14% Similarity=0.074 Sum_probs=70.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC--------ccccCCc-ee---cCCHHhhhcCCcEEEEcccCCh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK--------VTFPSAA-RR---MDTLNDLLAASDVISLHCAVTD 230 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~--------~~~~~g~-~~---~~sL~eLL~~sDvVil~lPlT~ 230 (620)
++|+|||.|.||.-+|-.|...|.+|..++|.....+ .....+. .. .....+.....|+|++++-..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~- 81 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY- 81 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH-
Confidence 4699999999999999999999999999998642211 0000111 00 011112345789999998654
Q ss_pred hhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEe
Q 007040 231 ETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCAL 278 (620)
Q Consensus 231 ~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaL 278 (620)
++...+ +.....+.+++.+|-.--| +-.++.+.+.+-..++.++..
T Consensus 82 ~~~~al-~~l~~~l~~~t~vv~lQNG-v~~~e~l~~~~~~~~v~~g~~ 127 (305)
T PRK05708 82 DAEPAV-ASLAHRLAPGAELLLLQNG-LGSQDAVAARVPHARCIFASS 127 (305)
T ss_pred hHHHHH-HHHHhhCCCCCEEEEEeCC-CCCHHHHHHhCCCCcEEEEEe
Confidence 344433 3445567788888877555 334455666765555555443
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.099 Score=52.15 Aligned_cols=39 Identities=15% Similarity=0.177 Sum_probs=35.2
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~ 195 (620)
...|..++|.|||+|.+|.++|+.|...|+ ++..+|...
T Consensus 16 Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 16 QKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 457899999999999999999999999999 688998764
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PLN02342 ornithine carbamoyltransferase | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.76 Score=50.10 Aligned_cols=67 Identities=7% Similarity=-0.003 Sum_probs=50.4
Q ss_pred ecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-------ccC-CceecCCHHhhhcCCcEEEEcc
Q 007040 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVT-------FPS-AARRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~-------~~~-g~~~~~sL~eLL~~sDvVil~l 226 (620)
+.|.+|++||- .++..+++..+..||++|.+..|..-..... ... .+....++++.++.+|||..-.
T Consensus 192 l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~ 267 (348)
T PLN02342 192 LEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDV 267 (348)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECC
Confidence 67999999997 4688888888899999999999865322210 111 2345688999999999999763
|
|
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.089 Score=59.22 Aligned_cols=113 Identities=14% Similarity=0.101 Sum_probs=68.4
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC--ccccC--Ccee--cCCHHhhhcCCcEEEEc--ccCC--
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK--VTFPS--AARR--MDTLNDLLAASDVISLH--CAVT-- 229 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~--~~~~~--g~~~--~~sL~eLL~~sDvVil~--lPlT-- 229 (620)
+.+++|+|||+|.+|.++|+.|+..|++|.++|....... ..... ++.. -....+.+..+|+|+.. +|.+
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~~~~ 84 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSPLEA 84 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCCccc
Confidence 5688999999999999999999999999999997652211 11111 2221 11123456689999986 4443
Q ss_pred ---hh-------hHhhcCH-HHhhc-c--------CCCcEEEEcCCChhhcHHHHHHHHHcCC
Q 007040 230 ---DE-------TIQIINA-ECLQH-I--------KPGAFLVNTGSSQLLDDCAVKQLLIDGT 272 (620)
Q Consensus 230 ---~~-------T~~lI~~-~~L~~-M--------K~gAiLINvgRG~vVDe~AL~~AL~~G~ 272 (620)
|. ...++.. +.+.. + ++..+-|--+-|+.--..-|...|+...
T Consensus 85 ~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g 147 (498)
T PRK02006 85 ALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAG 147 (498)
T ss_pred ccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence 21 1122322 22221 2 1234445445688877777777776543
|
|
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.03 Score=57.44 Aligned_cols=135 Identities=13% Similarity=0.064 Sum_probs=81.9
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC------------------ccccC-----------CceecCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK------------------VTFPS-----------AARRMDT 211 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~------------------~~~~~-----------g~~~~~s 211 (620)
.-+.|+|||.|.||..||+.+..-|++|+.+|.+..... ...+. -.....+
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tn 89 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTN 89 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCC
Confidence 345799999999999999999999999999999864221 00000 0112345
Q ss_pred HHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEE-EcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCcc
Q 007040 212 LNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLV-NTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAW 290 (620)
Q Consensus 212 L~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLI-NvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~sp 290 (620)
+.++++++|+|+=++-.+-+.+.-|=++.=...|+.++|+ |+++- ...++..++++.. ..++|-.|-++|.
T Consensus 90 v~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl---~lt~ia~~~~~~s-rf~GlHFfNPvPv---- 161 (298)
T KOG2304|consen 90 VSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSL---SLTDIASATQRPS-RFAGLHFFNPVPV---- 161 (298)
T ss_pred HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccce---eHHHHHhhccChh-hhceeeccCCchh----
Confidence 6677777888875554433322222222223457777765 55553 4455666766543 3468877765442
Q ss_pred ccCCCcEEEcCCCC
Q 007040 291 VREMPNVLILPRSA 304 (620)
Q Consensus 291 L~~~pNVIlTPHiA 304 (620)
-++=.||=|+..+
T Consensus 162 -MKLvEVir~~~TS 174 (298)
T KOG2304|consen 162 -MKLVEVIRTDDTS 174 (298)
T ss_pred -HHHhhhhcCCCCC
Confidence 2344566666443
|
|
| >COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.11 Score=57.24 Aligned_cols=150 Identities=14% Similarity=0.164 Sum_probs=92.7
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC------------------CCCcccc-CCceecCCHHhhhc-C
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG------------------KGKVTFP-SAARRMDTLNDLLA-A 218 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~------------------~~~~~~~-~g~~~~~sL~eLL~-~ 218 (620)
.|.|++|.|=|+|+.|+.+|+.|...|.+|+++|-+.. ....... .+...... ++++. .
T Consensus 204 ~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~-~e~~~~~ 282 (411)
T COG0334 204 DLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITN-EELLEVD 282 (411)
T ss_pred CcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccc-ccccccc
Confidence 38999999999999999999999999999999987654 1110000 12233322 45543 5
Q ss_pred CcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEE
Q 007040 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVL 298 (620)
Q Consensus 219 sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVI 298 (620)
|||++=|. +.+.|+.+...+++-. +++-.+-|++-.+.. -..++.|-+. +=|..- ..-.|+
T Consensus 283 cDIl~PcA-----~~n~I~~~na~~l~ak-~V~EgAN~P~t~eA~-~i~~erGIl~--~PD~la----------NAGGV~ 343 (411)
T COG0334 283 CDILIPCA-----LENVITEDNADQLKAK-IVVEGANGPTTPEAD-EILLERGILV--VPDILA----------NAGGVI 343 (411)
T ss_pred CcEEcccc-----cccccchhhHHHhhhc-EEEeccCCCCCHHHH-HHHHHCCCEE--cChhhc----------cCcCee
Confidence 88887433 6778988888888766 888888888753332 2222444332 222211 122233
Q ss_pred EcC--------CCCCCcHHHHHHHHHHHHHHHHHHHHc
Q 007040 299 ILP--------RSADYSEEVWMEIRDKAISVLQTFFFD 328 (620)
Q Consensus 299 lTP--------HiAg~T~ea~~~~~~~a~enL~~~L~~ 328 (620)
++= -..|..+++..++..++.+..+.+...
T Consensus 344 vS~~E~~qn~~~~~wt~eev~~kl~~im~~~~~~~~~~ 381 (411)
T COG0334 344 VSYLEWVQNAQGLYWTEEEVDEKLERIMVNAFEAVYQA 381 (411)
T ss_pred eehHHHHhhcccCccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 122445667777777777777766543
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.43 Score=52.63 Aligned_cols=112 Identities=15% Similarity=0.083 Sum_probs=69.5
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc----cccCCceec--CCHHhhhcC-CcEEEEcc--cCC-
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV----TFPSAARRM--DTLNDLLAA-SDVISLHC--AVT- 229 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~----~~~~g~~~~--~sL~eLL~~-sDvVil~l--PlT- 229 (620)
+.|+++.|+|.|.+|.++|+.|+..|++|+++|........ ....++... ....+++.. .|+|+..- |.+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~~ 82 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYTN 82 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCCC
Confidence 57899999999999999999999999999999976532111 111233221 123344554 89888755 322
Q ss_pred hh-------hHhhcCHHHh-hcc-CCCcEEEEcCCChhhcHHHHHHHHHcC
Q 007040 230 DE-------TIQIINAECL-QHI-KPGAFLVNTGSSQLLDDCAVKQLLIDG 271 (620)
Q Consensus 230 ~~-------T~~lI~~~~L-~~M-K~gAiLINvgRG~vVDe~AL~~AL~~G 271 (620)
+. ...++....| ..+ +...+-|--+.|+.--..-|...|+..
T Consensus 83 ~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~ 133 (447)
T PRK02472 83 PMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAG 133 (447)
T ss_pred HHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHC
Confidence 21 1122333323 333 333455555678888888888888753
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.17 Score=53.54 Aligned_cols=90 Identities=18% Similarity=0.241 Sum_probs=58.8
Q ss_pred EEEEeCChhhHHHHHHHhhCC--CEEEEECCCCCCCC-------cccc--C--CceecCCHHhhhcCCcEEEEcccCChh
Q 007040 165 LGIVGRSASARALATRSLSFK--MSVLYFDVPEGKGK-------VTFP--S--AARRMDTLNDLLAASDVISLHCAVTDE 231 (620)
Q Consensus 165 VGIIGlG~IG~~vA~~LkafG--~~V~~~dr~~~~~~-------~~~~--~--g~~~~~sL~eLL~~sDvVil~lPlT~~ 231 (620)
|+|||.|.+|..+|-.|...| .++..+|+...... .... . .+....+ .+.++.||+|+++......
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~~ 79 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCCC
Confidence 589999999999999998888 58999998764322 0000 0 1111233 4588899999999874221
Q ss_pred -----------hHhhcC--HHHhhccCCCcEEEEcCC
Q 007040 232 -----------TIQIIN--AECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 232 -----------T~~lI~--~~~L~~MK~gAiLINvgR 255 (620)
+..++. ...+....|.+++||++-
T Consensus 80 ~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sN 116 (300)
T cd00300 80 PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSN 116 (300)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 122221 224445568999999983
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.087 Score=57.18 Aligned_cols=39 Identities=5% Similarity=-0.003 Sum_probs=34.9
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~ 195 (620)
...|.+.+|.|||+|.+|..+|+.|...|. ++..+|...
T Consensus 23 q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 23 QQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred HHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 457899999999999999999999999998 788888754
|
|
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.26 Score=54.84 Aligned_cols=107 Identities=9% Similarity=0.076 Sum_probs=63.9
Q ss_pred cEEEEEeCChhhHHHHHHHhhC----------CCEEE-EECCCCCCCCccccCCceecCCHHhhhcC--CcEEEEcccCC
Q 007040 163 LVLGIVGRSASARALATRSLSF----------KMSVL-YFDVPEGKGKVTFPSAARRMDTLNDLLAA--SDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf----------G~~V~-~~dr~~~~~~~~~~~g~~~~~sL~eLL~~--sDvVil~lPlT 229 (620)
.+|||||+|.||+.+++.|... +++|. +++++..........+.....++++++.+ .|+|+.+++..
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~ 83 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI 83 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence 4699999999999999887532 45544 45766533221111223345689999864 69999998754
Q ss_pred hhhHhhcCHHHhhccCCCcEEEEcCCChhh-cHHHHHHHHHcCCc
Q 007040 230 DETIQIINAECLQHIKPGAFLVNTGSSQLL-DDCAVKQLLIDGTL 273 (620)
Q Consensus 230 ~~T~~lI~~~~L~~MK~gAiLINvgRG~vV-De~AL~~AL~~G~I 273 (620)
.....+ ....|+.|.-+|-..-+.+. .-++|.++.++..+
T Consensus 84 ~~~~~~----~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv 124 (426)
T PRK06349 84 EPAREL----ILKALEAGKHVVTANKALLAVHGAELFAAAEEKGV 124 (426)
T ss_pred hHHHHH----HHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCC
Confidence 222222 23556666666643322222 23567777766554
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.11 Score=57.05 Aligned_cols=92 Identities=11% Similarity=0.013 Sum_probs=57.5
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc--CCc--e-----ecCCHH-hhhcCCcEEEEcccCC
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP--SAA--R-----RMDTLN-DLLAASDVISLHCAVT 229 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~--~g~--~-----~~~sL~-eLL~~sDvVil~lPlT 229 (620)
+..+++.|+|+|.+|+.+|+.|...|.+|+++|.++........ .+. . ....|. .-+.++|+|+++++..
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD 308 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence 44688999999999999999999999999999987643221110 011 1 111232 2356889998888865
Q ss_pred hhhHhhcCHHHhhccCCCcEEEEc
Q 007040 230 DETIQIINAECLQHIKPGAFLVNT 253 (620)
Q Consensus 230 ~~T~~lI~~~~L~~MK~gAiLINv 253 (620)
.. +++-......+.+..+++-+
T Consensus 309 ~~--n~~~~~~~~~~~~~~ii~~~ 330 (453)
T PRK09496 309 EA--NILSSLLAKRLGAKKVIALV 330 (453)
T ss_pred HH--HHHHHHHHHHhCCCeEEEEE
Confidence 33 33333333445544444433
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.22 Score=53.10 Aligned_cols=91 Identities=18% Similarity=0.290 Sum_probs=57.0
Q ss_pred EEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC---------cccc--CCceecCCHHhhhcCCcEEEEcccCC-
Q 007040 164 VLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK---------VTFP--SAARRMDTLNDLLAASDVISLHCAVT- 229 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG~--~V~~~dr~~~~~~---------~~~~--~g~~~~~sL~eLL~~sDvVil~lPlT- 229 (620)
+|+|||.|.+|..+|-.|...|. ++..+|....... ..+. ..+....+-.+.+++||+|+++.-..
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~~~ 80 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGPSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCCCC
Confidence 58999999999999999876665 8999998753222 1111 01111122346788999999976542
Q ss_pred -h-hh---Hhhc--CH-------HHhhccCCCcEEEEcC
Q 007040 230 -D-ET---IQII--NA-------ECLQHIKPGAFLVNTG 254 (620)
Q Consensus 230 -~-~T---~~lI--~~-------~~L~~MK~gAiLINvg 254 (620)
| .| ..++ |. ..+..-.|++++|.++
T Consensus 81 kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvs 119 (307)
T cd05290 81 DPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILIT 119 (307)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 1 23 2232 22 2334445788898765
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK04284 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.77 Score=49.68 Aligned_cols=66 Identities=18% Similarity=0.145 Sum_probs=50.7
Q ss_pred ecCcEEEEEeCC--hhhHHHHHHHhhCCCEEEEECCCCCCCCcc---------ccCC--ceecCCHHhhhcCCcEEEEc
Q 007040 160 CRGLVLGIVGRS--ASARALATRSLSFKMSVLYFDVPEGKGKVT---------FPSA--ARRMDTLNDLLAASDVISLH 225 (620)
Q Consensus 160 L~GktVGIIGlG--~IG~~vA~~LkafG~~V~~~dr~~~~~~~~---------~~~g--~~~~~sL~eLL~~sDvVil~ 225 (620)
+.|++|++||-+ ++..+++..+..||++|.+..|..-..... ...| +....++++.++.+|+|..-
T Consensus 153 l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~ 231 (332)
T PRK04284 153 YKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTD 231 (332)
T ss_pred cCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEC
Confidence 679999999975 889999999999999999999864222100 0122 34567899999999999984
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.23 Score=53.20 Aligned_cols=93 Identities=13% Similarity=0.245 Sum_probs=59.7
Q ss_pred EEEEEeC-ChhhHHHHHHHhhCCC--EEEEECCCCCCCC-ccccCC-----cee-c--CCHHhhhcCCcEEEEcccCCh-
Q 007040 164 VLGIVGR-SASARALATRSLSFKM--SVLYFDVPEGKGK-VTFPSA-----ARR-M--DTLNDLLAASDVISLHCAVTD- 230 (620)
Q Consensus 164 tVGIIGl-G~IG~~vA~~LkafG~--~V~~~dr~~~~~~-~~~~~g-----~~~-~--~sL~eLL~~sDvVil~lPlT~- 230 (620)
+|+|||. |.+|..+|-.|...+. ++..||....... ....+. +.. . +++.+.++.||+|+++.-...
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~ 80 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence 5899999 9999999999876554 8999998762222 111111 111 1 134678999999999876421
Q ss_pred --h--------hHhhcC--HHHhhccCCCcEEEEcCCC
Q 007040 231 --E--------TIQIIN--AECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 231 --~--------T~~lI~--~~~L~~MK~gAiLINvgRG 256 (620)
. +..++. ...+..-.|++++|+++-.
T Consensus 81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNP 118 (312)
T TIGR01772 81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNP 118 (312)
T ss_pred CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 1 222221 1234445789999998764
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.1 Score=55.24 Aligned_cols=90 Identities=17% Similarity=0.201 Sum_probs=53.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCccccCCceec-----CCHHhhhc---CCcEEEEcccCChh
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARRM-----DTLNDLLA---ASDVISLHCAVTDE 231 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~~~g~~~~-----~sL~eLL~---~sDvVil~lPlT~~ 231 (620)
.|.+|.|+|.|.+|...++.++..|+ +|++.+++....+.....|.... .++.++.. ..|+|+-++... .
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~-~ 247 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHP-S 247 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCH-H
Confidence 58899999999999999999999999 68888877644332222222111 12222221 146666555421 1
Q ss_pred hHhhcCHHHhhccCCCcEEEEcCC
Q 007040 232 TIQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 232 T~~lI~~~~L~~MK~gAiLINvgR 255 (620)
+ + ...++.++++..+|.+|-
T Consensus 248 ~---~-~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 248 S---I-NTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred H---H-HHHHHHhhcCCEEEEEcc
Confidence 1 1 234555666666666653
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.093 Score=55.78 Aligned_cols=34 Identities=9% Similarity=-0.113 Sum_probs=31.7
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVP 194 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~ 194 (620)
.|.+|.|+|.|.||...+..++..|++|+++++.
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~ 205 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRR 205 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 5788999999999999999999999999999874
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.095 Score=56.09 Aligned_cols=67 Identities=12% Similarity=0.155 Sum_probs=46.4
Q ss_pred cEEEEEeCChhhHH-HHHHHhh-CCCEEE-EECCCCCCCCccccCCceecCCHHhhhc--CCcEEEEcccCCh
Q 007040 163 LVLGIVGRSASARA-LATRSLS-FKMSVL-YFDVPEGKGKVTFPSAARRMDTLNDLLA--ASDVISLHCAVTD 230 (620)
Q Consensus 163 ktVGIIGlG~IG~~-vA~~Lka-fG~~V~-~~dr~~~~~~~~~~~g~~~~~sL~eLL~--~sDvVil~lPlT~ 230 (620)
.+|||||+|.||+. .+..+.. -+++|. ++|++.......+ .+...+.+++++++ +.|+|++++|...
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~-~~~~~~~~~~ell~~~~vD~V~I~tp~~~ 76 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKADW-PTVTVVSEPQHLFNDPNIDLIVIPTPNDT 76 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhhC-CCCceeCCHHHHhcCCCCCEEEEcCCcHH
Confidence 47999999999985 5666654 378876 4677653322111 12345679999996 4799999999653
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.11 Score=56.79 Aligned_cols=37 Identities=14% Similarity=0.046 Sum_probs=34.3
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCC
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVP 194 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~ 194 (620)
..+.+++|.|||.|.+|..+|..|...|. ++..+|+.
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46899999999999999999999999999 79999986
|
|
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.087 Score=58.67 Aligned_cols=113 Identities=14% Similarity=0.116 Sum_probs=70.3
Q ss_pred ecCcEEEEEeCChhhHH-HHHHHhhCCCEEEEECCCCCCCCccc-cCCceec-CCHHhhhcCCcEEEEcc--cCC-hhhH
Q 007040 160 CRGLVLGIVGRSASARA-LATRSLSFKMSVLYFDVPEGKGKVTF-PSAARRM-DTLNDLLAASDVISLHC--AVT-DETI 233 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~-vA~~LkafG~~V~~~dr~~~~~~~~~-~~g~~~~-~sL~eLL~~sDvVil~l--PlT-~~T~ 233 (620)
..+++|.|||+|.+|.+ +|+.|+..|++|.++|.........+ ..++... ..-.+.+..+|+|+..- |.+ |...
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~ 84 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV 84 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH
Confidence 46789999999999999 79999999999999997653211111 1133221 11234566899888753 322 2221
Q ss_pred -------hhcCHH-Hhhcc-CC-CcEEEEcCCChhhcHHHHHHHHHcCC
Q 007040 234 -------QIINAE-CLQHI-KP-GAFLVNTGSSQLLDDCAVKQLLIDGT 272 (620)
Q Consensus 234 -------~lI~~~-~L~~M-K~-gAiLINvgRG~vVDe~AL~~AL~~G~ 272 (620)
.+++.- .+..+ ++ ..+-|--+-|+.--..-+...|+...
T Consensus 85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g 133 (461)
T PRK00421 85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG 133 (461)
T ss_pred HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 234443 33333 32 34555555698888887888887543
|
|
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.29 Score=52.78 Aligned_cols=111 Identities=14% Similarity=0.168 Sum_probs=65.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhC----------CCEEEE-ECCCCC----CC-Cc------cccCC-------ceecCCHH
Q 007040 163 LVLGIVGRSASARALATRSLSF----------KMSVLY-FDVPEG----KG-KV------TFPSA-------ARRMDTLN 213 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf----------G~~V~~-~dr~~~----~~-~~------~~~~g-------~~~~~sL~ 213 (620)
.+|||+|+|.||+.+++.+... +++|.+ +|+... .. .. ....+ .....+++
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 3699999999999999998754 567654 454321 00 00 00001 01123788
Q ss_pred hhhc--CCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhh-cHHHHHHHHHcCCc
Q 007040 214 DLLA--ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLL-DDCAVKQLLIDGTL 273 (620)
Q Consensus 214 eLL~--~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vV-De~AL~~AL~~G~I 273 (620)
+++. ..|+|+.++|....+...--.-....|+.|.-+|-..-+.+. ..++|.++.++..+
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~ 145 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGV 145 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCC
Confidence 8884 579999999965443222112234556677777765444442 34567777766554
|
|
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.089 Score=59.02 Aligned_cols=113 Identities=12% Similarity=0.111 Sum_probs=69.7
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-ccCCceecC--CHHhhhcCCcEEEEc--ccCC-hhh
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT-FPSAARRMD--TLNDLLAASDVISLH--CAVT-DET 232 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~-~~~g~~~~~--sL~eLL~~sDvVil~--lPlT-~~T 232 (620)
.+.+++|.|+|+|.+|+++|+.|...|+.|.++|+........ ...|+.... ...+.+.++|+|+.. +|.+ |..
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~~ 91 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPLL 91 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHHH
Confidence 4788999999999999999999999999999999764322111 112333221 123445688988875 3322 221
Q ss_pred -------HhhcCHHHhhc-------c-CC-CcEEEEcCCChhhcHHHHHHHHHcC
Q 007040 233 -------IQIINAECLQH-------I-KP-GAFLVNTGSSQLLDDCAVKQLLIDG 271 (620)
Q Consensus 233 -------~~lI~~~~L~~-------M-K~-gAiLINvgRG~vVDe~AL~~AL~~G 271 (620)
..+++.-.+.. + .+ ..+-|--+-|+.--..-|...|+..
T Consensus 92 ~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~ 146 (473)
T PRK00141 92 VDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEG 146 (473)
T ss_pred HHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence 11233333321 1 12 2344444568888888888888753
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.27 Score=52.89 Aligned_cols=97 Identities=19% Similarity=0.310 Sum_probs=62.1
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCC--EEEEECCCCCCCC-cc-----ccCCce---ecCCHHhhhcCCcEEEEcccC
Q 007040 161 RGLVLGIVGR-SASARALATRSLSFKM--SVLYFDVPEGKGK-VT-----FPSAAR---RMDTLNDLLAASDVISLHCAV 228 (620)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafG~--~V~~~dr~~~~~~-~~-----~~~g~~---~~~sL~eLL~~sDvVil~lPl 228 (620)
...+|+|||. |.+|..+|..|...+. ++..+|....... .. ....+. ..+++.+.++.||+|+++.-.
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~ 96 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV 96 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence 4569999999 9999999999985454 8999998762221 01 001111 123457889999999997654
Q ss_pred Ch---hhHh-hc--C-------HHHhhccCCCcEEEEcCCCh
Q 007040 229 TD---ETIQ-II--N-------AECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 229 T~---~T~~-lI--~-------~~~L~~MK~gAiLINvgRG~ 257 (620)
.. .++. ++ | .+.+....|.+++|+++-.-
T Consensus 97 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv 138 (323)
T PLN00106 97 PRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV 138 (323)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 21 1221 11 1 12344456889999987654
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.11 Score=57.05 Aligned_cols=39 Identities=10% Similarity=0.069 Sum_probs=34.8
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~ 195 (620)
...|...+|+|||+|.+|..+|+.|...|. ++..+|...
T Consensus 33 q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ 72 (390)
T PRK07411 33 QKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDV 72 (390)
T ss_pred HHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 357899999999999999999999999998 788888753
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.37 Score=50.26 Aligned_cols=65 Identities=14% Similarity=0.150 Sum_probs=45.0
Q ss_pred cEEEEEe-CChhhHHHHHHHhh-CCCEEEE-ECCCCCCC---C--c---cccCCceecCCHHhhhcCCcEEEEccc
Q 007040 163 LVLGIVG-RSASARALATRSLS-FKMSVLY-FDVPEGKG---K--V---TFPSAARRMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~Lka-fG~~V~~-~dr~~~~~---~--~---~~~~g~~~~~sL~eLL~~sDvVil~lP 227 (620)
.+|+|+| +|+||+.+++.+.. -++++.+ +|+..... . . ....++..+.+++++...+|+|+.+.|
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~ 77 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTT 77 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCC
Confidence 3799999 79999999999985 5887665 67432111 0 0 001234556788888667899999886
|
|
| >PRK03515 ornithine carbamoyltransferase subunit I; Provisional | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.63 Score=50.43 Aligned_cols=66 Identities=8% Similarity=0.061 Sum_probs=50.8
Q ss_pred ecCcEEEEEeCC--hhhHHHHHHHhhCCCEEEEECCCCCCCCcc---------ccCC--ceecCCHHhhhcCCcEEEEc
Q 007040 160 CRGLVLGIVGRS--ASARALATRSLSFKMSVLYFDVPEGKGKVT---------FPSA--ARRMDTLNDLLAASDVISLH 225 (620)
Q Consensus 160 L~GktVGIIGlG--~IG~~vA~~LkafG~~V~~~dr~~~~~~~~---------~~~g--~~~~~sL~eLL~~sDvVil~ 225 (620)
+.|.+|++||-+ ++..+++..+..||++|.++.|..-..... ...| +....++++.++.+|+|..-
T Consensus 154 l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd 232 (336)
T PRK03515 154 FNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD 232 (336)
T ss_pred cCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence 678999999976 689999999999999999999865322110 0012 34568899999999999975
|
|
| >TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.3 Score=56.96 Aligned_cols=128 Identities=16% Similarity=0.265 Sum_probs=82.0
Q ss_pred EEEEcC-CCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhC
Q 007040 106 RLIHVD-TSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSF 184 (620)
Q Consensus 106 ~VtNtp-g~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~Lkaf 184 (620)
++++-. .......||-++-|=|-|+| |.-- +. .+...|.+.+|.|||.|.+|..+|+.|.+.
T Consensus 298 r~~dL~~~mdP~~la~~avdlnlkLmk--------------WRll-P~--l~~ekL~~~kVLIvGaGGLGs~VA~~La~~ 360 (664)
T TIGR01381 298 ISVDLSKEFDPKRLAERSVDLNLKLMK--------------WRLH-PD--LQLERYSQLKVLLLGAGTLGCNVARCLIGW 360 (664)
T ss_pred eEechhhhcCHHHHHHHHHHHHHHHHh--------------hhcC-Ch--hhHHHHhcCeEEEECCcHHHHHHHHHHHHc
Confidence 444433 33557788888877776663 3211 00 122568999999999999999999999999
Q ss_pred CC-EEEEECCCCCC------------------CC----------ccccC-----Cce-e-------c------------C
Q 007040 185 KM-SVLYFDVPEGK------------------GK----------VTFPS-----AAR-R-------M------------D 210 (620)
Q Consensus 185 G~-~V~~~dr~~~~------------------~~----------~~~~~-----g~~-~-------~------------~ 210 (620)
|. +++.+|...-. +. ..... +.. . . .
T Consensus 361 GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~ 440 (664)
T TIGR01381 361 GVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIA 440 (664)
T ss_pred CCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEEeeeeeccccccCCchhhhhccccHH
Confidence 99 78888853210 00 00000 000 0 0 2
Q ss_pred CHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcC
Q 007040 211 TLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 211 sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvg 254 (620)
.+.+++.++|+|+.++- +.+++-+++.....+ +..+|+.+
T Consensus 441 ~l~~Li~~~DvV~d~tD-n~esR~L~n~~c~~~---~kplI~aA 480 (664)
T TIGR01381 441 RLEQLIKDHDVVFLLLD-SREARWLPTVLCSRH---KKIAISAA 480 (664)
T ss_pred HHHHHHhhCCEEEECCC-CHHHHHHHHHHHHHh---CCCEEEEE
Confidence 36678999999998885 678898888655543 44666654
|
This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. |
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.28 Score=43.18 Aligned_cols=67 Identities=19% Similarity=0.171 Sum_probs=44.7
Q ss_pred CcEEEEEeCChhhHHHHHHHh-hCCCE-EEEECCCCCCCCccccCCceecCCHHhhhcC--CcEEEEcccCC
Q 007040 162 GLVLGIVGRSASARALATRSL-SFKMS-VLYFDVPEGKGKVTFPSAARRMDTLNDLLAA--SDVISLHCAVT 229 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lk-afG~~-V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~--sDvVil~lPlT 229 (620)
..++.|+|+|++|++++.... ..|+. +.++|..+...-... .++..+.+++++.+. .|+.++++|..
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i-~gipV~~~~~~l~~~~~i~iaii~VP~~ 73 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEI-GGIPVYGSMDELEEFIEIDIAIITVPAE 73 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEE-TTEEEESSHHHHHHHCTTSEEEEES-HH
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEE-CCEEeeccHHHhhhhhCCCEEEEEcCHH
Confidence 356999999999999985543 45653 456666654333222 345555577777766 99999999943
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.061 Score=56.70 Aligned_cols=70 Identities=13% Similarity=0.084 Sum_probs=48.7
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcccc-----CCc--eecCC---HHhhhcCCcEEEEcccC
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFP-----SAA--RRMDT---LNDLLAASDVISLHCAV 228 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~~-----~g~--~~~~s---L~eLL~~sDvVil~lPl 228 (620)
+.|+++.|+|.|..|++++-.|...|+ +|+++||+......... .+. ....+ +.+.+..+|+|+.+.|.
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~ 204 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPM 204 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCC
Confidence 468899999999999999999999998 79999998643321110 010 01112 23456678999988885
Q ss_pred C
Q 007040 229 T 229 (620)
Q Consensus 229 T 229 (620)
.
T Consensus 205 G 205 (283)
T PRK14027 205 G 205 (283)
T ss_pred C
Confidence 4
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.37 Score=51.64 Aligned_cols=94 Identities=15% Similarity=0.255 Sum_probs=60.1
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCC--EEEEECCCCCCCC-ccccCC-----cee--c-CCHHhhhcCCcEEEEcccCC-
Q 007040 163 LVLGIVGR-SASARALATRSLSFKM--SVLYFDVPEGKGK-VTFPSA-----ARR--M-DTLNDLLAASDVISLHCAVT- 229 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafG~--~V~~~dr~~~~~~-~~~~~g-----~~~--~-~sL~eLL~~sDvVil~lPlT- 229 (620)
++|+|||. |.+|..+|-.|...|. ++..+|.....+. ....+. +.. . +++.+.+++||+|+++.-..
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~ 80 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR 80 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence 47999999 9999999999987775 8999998721111 011111 111 1 23457889999999876542
Q ss_pred -h-hhHh-hc--CH-------HHhhccCCCcEEEEcCCC
Q 007040 230 -D-ETIQ-II--NA-------ECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 230 -~-~T~~-lI--~~-------~~L~~MK~gAiLINvgRG 256 (620)
| +|+- ++ |. +.+..-.|.+++||++-.
T Consensus 81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNP 119 (310)
T cd01337 81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNP 119 (310)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 2 2222 22 21 244445789999998764
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.079 Score=53.66 Aligned_cols=90 Identities=16% Similarity=0.043 Sum_probs=59.7
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-ccCCc----eecCCHHhhhcCCcEEEEcccCChhh
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT-FPSAA----RRMDTLNDLLAASDVISLHCAVTDET 232 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~-~~~g~----~~~~sL~eLL~~sDvVil~lPlT~~T 232 (620)
.++.|++|.|||-|..|..=|+.+...|.+|+++++........ ...+. ...-.+++ +..+++|+.+++..
T Consensus 8 ~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~-~~~~~lviaAt~d~--- 83 (210)
T COG1648 8 LDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAED-LDDAFLVIAATDDE--- 83 (210)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhh-hcCceEEEEeCCCH---
Confidence 57999999999999999999999999999999999887211100 00000 11112333 33488888777654
Q ss_pred HhhcCHHHhhccCCCcEEEEc
Q 007040 233 IQIINAECLQHIKPGAFLVNT 253 (620)
Q Consensus 233 ~~lI~~~~L~~MK~gAiLINv 253 (620)
-+|+..+..+++-.++||+
T Consensus 84 --~ln~~i~~~a~~~~i~vNv 102 (210)
T COG1648 84 --ELNERIAKAARERRILVNV 102 (210)
T ss_pred --HHHHHHHHHHHHhCCceec
Confidence 3345555556666677775
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.66 Score=49.86 Aligned_cols=99 Identities=15% Similarity=0.152 Sum_probs=61.3
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCC-------EEEEECCCCCC--CC---cccc-------CCceecCCHHhhhcCCcEE
Q 007040 163 LVLGIVGR-SASARALATRSLSFKM-------SVLYFDVPEGK--GK---VTFP-------SAARRMDTLNDLLAASDVI 222 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafG~-------~V~~~dr~~~~--~~---~~~~-------~g~~~~~sL~eLL~~sDvV 222 (620)
++|+|||. |.+|..+|..|...|. ++..+|..... .. .... ..+....+..+.+++||+|
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv 82 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA 82 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence 47999999 9999999999986665 79999985422 11 0000 1112224556788999999
Q ss_pred EEcccCCh---hhHh-hc--CH-------HHhhccC-CCcEEEEcCCChhhcHHH
Q 007040 223 SLHCAVTD---ETIQ-II--NA-------ECLQHIK-PGAFLVNTGSSQLLDDCA 263 (620)
Q Consensus 223 il~lPlT~---~T~~-lI--~~-------~~L~~MK-~gAiLINvgRG~vVDe~A 263 (620)
+++.-... +|+- ++ |. ..+.... |.+++|+++ ..+|.-.
T Consensus 83 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t 135 (322)
T cd01338 83 LLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNA 135 (322)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHH
Confidence 99875421 1221 11 11 2333344 588999987 4455444
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN02948 phosphoribosylaminoimidazole carboxylase | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.2 Score=57.83 Aligned_cols=73 Identities=15% Similarity=0.242 Sum_probs=52.1
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCce--ecCC---HHhhhcCCcEEEEcccCC
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR--RMDT---LNDLLAASDVISLHCAVT 229 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~--~~~s---L~eLL~~sDvVil~lPlT 229 (620)
+.....++|||||-|..|+.++..++.+|++|+++|+.+......+.+... .+.+ +.++..++|+|+......
T Consensus 17 ~~~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e~v 94 (577)
T PLN02948 17 VHGVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIEHV 94 (577)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecCCC
Confidence 345788999999999999999999999999999999876432211111111 1223 556678899997765544
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.22 Score=49.58 Aligned_cols=36 Identities=11% Similarity=-0.063 Sum_probs=32.4
Q ss_pred ecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
+.|+++.|.|. |.||+.+++.|...|++|++++++.
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~ 40 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK 40 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence 57889999996 9999999999999999999988764
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.17 Score=50.01 Aligned_cols=37 Identities=22% Similarity=0.148 Sum_probs=33.2
Q ss_pred ecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
+.|+++.|.|. |.||..+++.|...|++|++.+++..
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~ 40 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNEN 40 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 67899999986 77999999999999999999998763
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.85 Score=48.68 Aligned_cols=141 Identities=11% Similarity=0.065 Sum_probs=82.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC------CCCccc-cCC----ceecCCHHhhhcCCcEEEEcccCChh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEG------KGKVTF-PSA----ARRMDTLNDLLAASDVISLHCAVTDE 231 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~------~~~~~~-~~g----~~~~~sL~eLL~~sDvVil~lPlT~~ 231 (620)
++|.|+|.|.||.-+|.+|...|..|..+.|... .+-... ..+ ......-.+.+..+|+|++++-.. +
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~-q 79 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAY-Q 79 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEeccc-c
Confidence 5799999999999999999999988888877663 110000 011 111223345667899999998644 4
Q ss_pred hHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCC--CCCCCccccCCCcEEEcCCCCCCc
Q 007040 232 TIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG--PQWMEAWVREMPNVLILPRSADYS 307 (620)
Q Consensus 232 T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~--P~~~~spL~~~pNVIlTPHiAg~T 307 (620)
|...+ +.....+++.++++-.=-| +=.++.+.+.+...+|. .++..+.. ..+..-.......+.+.+..++..
T Consensus 80 ~~~al-~~l~~~~~~~t~vl~lqNG-~g~~e~l~~~~~~~~il-~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~ 154 (307)
T COG1893 80 LEEAL-PSLAPLLGPNTVVLFLQNG-LGHEEELRKILPKETVL-GGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRD 154 (307)
T ss_pred HHHHH-HHhhhcCCCCcEEEEEeCC-CcHHHHHHHhCCcceEE-EEEeeeeeEecCCceEEEecCCcEEEccCCCCch
Confidence 44444 3456677888777644333 22333555555555444 24443321 111122223356677777666655
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.095 Score=59.94 Aligned_cols=88 Identities=11% Similarity=0.111 Sum_probs=59.3
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCce-------ecCCHHhh-hcCCcEEEEcccCChhhHh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR-------RMDTLNDL-LAASDVISLHCAVTDETIQ 234 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~-------~~~sL~eL-L~~sDvVil~lPlT~~T~~ 234 (620)
.++.|+|+|++|+.+|+.|+..|.+|++.|.++...+.....+.. ..+.|+++ ++++|.|+++++..+++..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~ 497 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE 497 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence 568899999999999999999999999999887543322222221 11123222 5689999999998777665
Q ss_pred hcCHHHhhccCCCcEEEE
Q 007040 235 IINAECLQHIKPGAFLVN 252 (620)
Q Consensus 235 lI~~~~L~~MK~gAiLIN 252 (620)
++-. ...+.+...+|-
T Consensus 498 iv~~--~~~~~~~~~iia 513 (558)
T PRK10669 498 IVAS--AREKRPDIEIIA 513 (558)
T ss_pred HHHH--HHHHCCCCeEEE
Confidence 5533 233345555554
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.61 Score=49.27 Aligned_cols=105 Identities=18% Similarity=0.244 Sum_probs=74.0
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHh-------
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQ------- 234 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~------- 234 (620)
|++++|||--.=-..+++.|...|++|..|.-..... .+ .++......++.+.++|+|++-+|.+.+...
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~--~~-~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~ 77 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLED--GF-TGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSN 77 (287)
T ss_pred CcEEEEEcccHHHHHHHHHHHHCCCEEEEEecccccc--cc-ccceeecchhhhhccCCEEEECCccccCCceEeccccc
Confidence 6789999999988999999999999987776432111 12 2455555667779999999999997655211
Q ss_pred ---hcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 235 ---IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 235 ---lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
.++++.|+.|+++++ +-+|. +..++.++.++..|.
T Consensus 78 ~~~~l~~~~l~~~~~~~~-~~~G~----~~~~l~~~a~~~gi~ 115 (287)
T TIGR02853 78 EKVVLTPELLESTKGHCT-IYVGI----SNPYLEQLAADAGVK 115 (287)
T ss_pred CCccccHHHHHhcCCCCE-EEEec----CCHHHHHHHHHCCCe
Confidence 246889999998654 55554 344555566666665
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.14 Score=56.22 Aligned_cols=39 Identities=5% Similarity=0.025 Sum_probs=34.5
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~ 195 (620)
...|...+|.|||+|.+|..+|..|...|. ++..+|...
T Consensus 37 q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ 76 (392)
T PRK07878 37 QKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV 76 (392)
T ss_pred HHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 356899999999999999999999999998 788888653
|
|
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.11 Score=54.46 Aligned_cols=68 Identities=18% Similarity=0.187 Sum_probs=48.3
Q ss_pred cEEEEEeCChhhH-HHHHHHhhCC--C-EEEEECCCCCCCCcc-ccCCc-eecCCHHhhhcC--CcEEEEcccCCh
Q 007040 163 LVLGIVGRSASAR-ALATRSLSFK--M-SVLYFDVPEGKGKVT-FPSAA-RRMDTLNDLLAA--SDVISLHCAVTD 230 (620)
Q Consensus 163 ktVGIIGlG~IG~-~vA~~LkafG--~-~V~~~dr~~~~~~~~-~~~g~-~~~~sL~eLL~~--sDvVil~lPlT~ 230 (620)
.++||||+|.|++ ..+..+...+ + -|.++|++....... ...++ ..+.+++++++. .|+|++++|..-
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~ 79 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNAL 79 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChh
Confidence 4799999997775 5888888776 3 455668887543311 11233 356799999987 499999999663
|
|
| >PRK10637 cysG siroheme synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.15 Score=57.25 Aligned_cols=93 Identities=11% Similarity=-0.048 Sum_probs=62.1
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc-CC-c--eecCCHHhhhcCCcEEEEcccCChhh
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP-SA-A--RRMDTLNDLLAASDVISLHCAVTDET 232 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~-~g-~--~~~~sL~eLL~~sDvVil~lPlT~~T 232 (620)
+.+|.|++|.|||-|.+|..=++.|..+|++|+++.+.......... .+ + ..-.-..+.+..+++|+.++...
T Consensus 7 ~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~--- 83 (457)
T PRK10637 7 FCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDD--- 83 (457)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCH---
Confidence 35799999999999999999999999999999999886532211110 11 1 11111234567888888776644
Q ss_pred HhhcCHHHhhccCCCcEEEEcC
Q 007040 233 IQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 233 ~~lI~~~~L~~MK~gAiLINvg 254 (620)
-+|......++...+++|++
T Consensus 84 --~~n~~i~~~a~~~~~lvN~~ 103 (457)
T PRK10637 84 --AVNQRVSEAAEARRIFCNVV 103 (457)
T ss_pred --HHhHHHHHHHHHcCcEEEEC
Confidence 24555555566666788864
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.20 E-value=2.4 Score=43.49 Aligned_cols=39 Identities=13% Similarity=-0.020 Sum_probs=35.4
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
..+.|++|.|||-|.+|..=++.|..+|.+|+++.|...
T Consensus 21 l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~ 59 (223)
T PRK05562 21 LLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFS 59 (223)
T ss_pred EECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence 467899999999999999999999999999999998763
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.4 Score=51.63 Aligned_cols=97 Identities=11% Similarity=0.193 Sum_probs=59.3
Q ss_pred ecCcEEEEEeC-ChhhHHHHHHHhh--CCCEEEEECCCCCCCC-cc----ccC-Cceec---CCHHhhhcCCcEEEEccc
Q 007040 160 CRGLVLGIVGR-SASARALATRSLS--FKMSVLYFDVPEGKGK-VT----FPS-AARRM---DTLNDLLAASDVISLHCA 227 (620)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~Lka--fG~~V~~~dr~~~~~~-~~----~~~-g~~~~---~sL~eLL~~sDvVil~lP 227 (620)
+..++|+|||. |.||..+|..|.. ...++..+|....... .. ... .+... .+..+.++.||+|++++-
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG 85 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG 85 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence 46679999999 9999999999984 4458999998432221 01 001 11111 122578999999998775
Q ss_pred CChh---hH-hhcCH------H---HhhccCCCcEEEEcCCC
Q 007040 228 VTDE---TI-QIINA------E---CLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 228 lT~~---T~-~lI~~------~---~L~~MK~gAiLINvgRG 256 (620)
.... ++ .++.. . .+..-.+.++++.++-+
T Consensus 86 ~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNP 127 (321)
T PTZ00325 86 VPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNP 127 (321)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 4221 11 12211 2 23334667788887654
|
|
| >PRK12562 ornithine carbamoyltransferase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=93.15 E-value=1.2 Score=48.23 Aligned_cols=67 Identities=6% Similarity=0.044 Sum_probs=50.9
Q ss_pred ecCcEEEEEeCC--hhhHHHHHHHhhCCCEEEEECCCCCCCCccc---------cCC--ceecCCHHhhhcCCcEEEEcc
Q 007040 160 CRGLVLGIVGRS--ASARALATRSLSFKMSVLYFDVPEGKGKVTF---------PSA--ARRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 160 L~GktVGIIGlG--~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~---------~~g--~~~~~sL~eLL~~sDvVil~l 226 (620)
+.|.+|++||-+ ++..+++..+..+|++|.+..|..-.....+ ..| +....++++.++.+|||..-.
T Consensus 154 l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~ 233 (334)
T PRK12562 154 FNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTDV 233 (334)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence 679999999986 7899999999999999999998652211100 012 344678999999999999753
|
|
| >PRK11891 aspartate carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.34 Score=54.10 Aligned_cols=67 Identities=15% Similarity=0.167 Sum_probs=50.9
Q ss_pred ecCcEEEEEeCC---hhhHHHHHHHhhC-CCEEEEECCCCCCCCccc-------cCCceecCCHHhhhcCCcEEEEcc
Q 007040 160 CRGLVLGIVGRS---ASARALATRSLSF-KMSVLYFDVPEGKGKVTF-------PSAARRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 160 L~GktVGIIGlG---~IG~~vA~~Lkaf-G~~V~~~dr~~~~~~~~~-------~~g~~~~~sL~eLL~~sDvVil~l 226 (620)
+.|++|++||-+ ++..+++..+..+ |++|.+..|..-.....+ ...+....++++.++.+|||....
T Consensus 239 l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~ 316 (429)
T PRK11891 239 VDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATR 316 (429)
T ss_pred cCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence 689999999994 8899999998877 999999998653221111 112345689999999999999844
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.19 Score=57.88 Aligned_cols=70 Identities=9% Similarity=0.015 Sum_probs=48.7
Q ss_pred ecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcc----------------------ccCCceecCCHHhhh
Q 007040 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVT----------------------FPSAARRMDTLNDLL 216 (620)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~----------------------~~~g~~~~~sL~eLL 216 (620)
-.|++|.|.|. |.||+.+++.|...|++|++++|+....... ....+...+++.+++
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL 157 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL 157 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence 36889999986 9999999999999999999999875432100 000011122345667
Q ss_pred cCCcEEEEcccCC
Q 007040 217 AASDVISLHCAVT 229 (620)
Q Consensus 217 ~~sDvVil~lPlT 229 (620)
..+|+||+++...
T Consensus 158 ggiDiVVn~AG~~ 170 (576)
T PLN03209 158 GNASVVICCIGAS 170 (576)
T ss_pred cCCCEEEEccccc
Confidence 8899999887543
|
|
| >PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed | Back alignment and domain information |
|---|
Probab=93.07 E-value=1.5 Score=52.34 Aligned_cols=182 Identities=14% Similarity=0.177 Sum_probs=118.6
Q ss_pred hcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHH
Q 007040 102 DLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRS 181 (620)
Q Consensus 102 erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~L 181 (620)
+..|+|.|..-.. +|=-+++-+|+.+|-. .+.+...+|.|.|.|.-|-.+|+.|
T Consensus 151 ~~~ip~f~DD~~G---Ta~v~lA~l~na~~~~-----------------------~~~~~~~~iv~~GaGaag~~~a~~l 204 (752)
T PRK07232 151 RMDIPVFHDDQHG---TAIISAAALLNALELV-----------------------GKKIEDVKIVVSGAGAAAIACLNLL 204 (752)
T ss_pred hcCCCeeccccch---HHHHHHHHHHHHHHHh-----------------------CCChhhcEEEEECccHHHHHHHHHH
Confidence 4478998884433 3334566677766421 1347889999999999999999999
Q ss_pred hhCCC---EEEEECCCCC---CC----C---ccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCc
Q 007040 182 LSFKM---SVLYFDVPEG---KG----K---VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGA 248 (620)
Q Consensus 182 kafG~---~V~~~dr~~~---~~----~---~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gA 248 (620)
...|. +++.+|+..- .. . ..+... ....+|.|++..+|+++=.- +-++|+++.+..|.+..
T Consensus 205 ~~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~-~~~~~l~~~i~~~~v~iG~s-----~~g~~~~~~v~~M~~~p 278 (752)
T PRK07232 205 VALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAVD-TDARTLAEAIEGADVFLGLS-----AAGVLTPEMVKSMADNP 278 (752)
T ss_pred HHcCCCcccEEEEcCCCeecCCCcccccHHHHHHhcc-CCCCCHHHHHcCCCEEEEcC-----CCCCCCHHHHHHhccCC
Confidence 99998 8999998741 10 0 011111 22358999999999887532 24899999999999999
Q ss_pred EEEEcCCChhh-cHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEEEcCCCCCCc-----HHHHHHHHHHHHHHH
Q 007040 249 FLVNTGSSQLL-DDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYS-----EEVWMEIRDKAISVL 322 (620)
Q Consensus 249 iLINvgRG~vV-De~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVIlTPHiAg~T-----~ea~~~~~~~a~enL 322 (620)
++.=.+..... ..+..+++ ..|.|.+.+- ...|- +..|+++=|-++-.. ....++|.-.+++.|
T Consensus 279 iifalsNP~~E~~p~~a~~~-~~~~i~atGr--s~~pn-------Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~al 348 (752)
T PRK07232 279 IIFALANPDPEITPEEAKAV-RPDAIIATGR--SDYPN-------QVNNVLCFPYIFRGALDVGATTINEEMKLAAVRAI 348 (752)
T ss_pred EEEecCCCCccCCHHHHHHh-cCCEEEEECC--cCCCC-------cccceeecchhhHHHHHcCCccCCHHHHHHHHHHH
Confidence 99999987642 22222222 2233433321 11121 567899999754322 223467777777777
Q ss_pred HHH
Q 007040 323 QTF 325 (620)
Q Consensus 323 ~~~ 325 (620)
...
T Consensus 349 a~~ 351 (752)
T PRK07232 349 AEL 351 (752)
T ss_pred Hhh
Confidence 775
|
|
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.17 Score=56.83 Aligned_cols=111 Identities=17% Similarity=0.104 Sum_probs=69.0
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc---cccCCcee--cCCHHhhhcCCcEEEEcc--cCC-hh
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV---TFPSAARR--MDTLNDLLAASDVISLHC--AVT-DE 231 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~---~~~~g~~~--~~sL~eLL~~sDvVil~l--PlT-~~ 231 (620)
+.|++|+|+|+|..|.+.|+.|+..|++|+++|........ ....++.. .....+.+..+|+|+..- |.+ |.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p~ 85 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPYRPE 85 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCCCHH
Confidence 46889999999999999999999999999999965422111 11111111 111235567899988753 332 21
Q ss_pred h-------HhhcCHHHh--hc-cC-----CCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 232 T-------IQIINAECL--QH-IK-----PGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 232 T-------~~lI~~~~L--~~-MK-----~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
. ..++++-.| .. ++ ...+-|--+-|+.--..-+...|+.
T Consensus 86 ~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~ 139 (468)
T PRK04690 86 ALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRA 139 (468)
T ss_pred HHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence 1 124444333 33 32 1345555566888877778878764
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.14 Score=52.73 Aligned_cols=36 Identities=17% Similarity=0.135 Sum_probs=31.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCE-EEEECCCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMS-VLYFDVPEG 196 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~-V~~~dr~~~ 196 (620)
.|.+|.|+|.|.||..+++.++++|.+ |++.+++..
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~ 156 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPD 156 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence 588999999999999999999999996 888876653
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.18 Score=55.93 Aligned_cols=110 Identities=12% Similarity=0.041 Sum_probs=67.4
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-cccc---CCceecC--CHHhhhcCCcEEEEcc--cCC-hh
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-VTFP---SAARRMD--TLNDLLAASDVISLHC--AVT-DE 231 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~-~~~~---~g~~~~~--sL~eLL~~sDvVil~l--PlT-~~ 231 (620)
.+-+++|||+|.+|.++|+.|+..|++|.++|....... .... .++.... .-.+.+.++|+|+..- |.+ |+
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~ 84 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPA 84 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHH
Confidence 356799999999999999999999999999997653211 1111 1332211 1234567899887743 322 22
Q ss_pred hH-------hhcCH-HHhhc-cCCCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 232 TI-------QIINA-ECLQH-IKPGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 232 T~-------~lI~~-~~L~~-MK~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
.. .++.. +.+.. ++...+-|--+.|+.--..-+...|+.
T Consensus 85 ~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~ 132 (448)
T PRK03803 85 LRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKA 132 (448)
T ss_pred HHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 11 13332 33333 343345555566888887778888875
|
|
| >TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.15 Score=54.57 Aligned_cols=62 Identities=21% Similarity=0.312 Sum_probs=44.9
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCc--eecCC---HHhhhcCCcEEEEc
Q 007040 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA--RRMDT---LNDLLAASDVISLH 225 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~--~~~~s---L~eLL~~sDvVil~ 225 (620)
+|||||-|..|+.++..++.+|++|+++|+++......+.+.. ..+.+ +.+++..+|+|...
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~e 67 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITFE 67 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEeC
Confidence 5999999999999999999999999999987643331122111 11223 67788889988543
|
Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.13 Score=59.68 Aligned_cols=92 Identities=14% Similarity=0.205 Sum_probs=63.4
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCce-------ecCCHHhh-hcCCcEEEEcccCChhhH
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR-------RMDTLNDL-LAASDVISLHCAVTDETI 233 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~-------~~~sL~eL-L~~sDvVil~lPlT~~T~ 233 (620)
..++.|+|+|++|+.+|+.|...|.++++.|.++...+.....+.. ..+.|+++ +.+||+|+++++..+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence 4579999999999999999999999999999887543322222211 11223333 678999999999876665
Q ss_pred hhcCHHHhhccCCCcEEEEcCC
Q 007040 234 QIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgR 255 (620)
.++ .....+.|...+|-.+|
T Consensus 480 ~i~--~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 480 KIV--ELCQQHFPHLHILARAR 499 (601)
T ss_pred HHH--HHHHHHCCCCeEEEEeC
Confidence 554 23455666766665544
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.24 Score=49.11 Aligned_cols=35 Identities=14% Similarity=0.102 Sum_probs=32.4
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
.|.+|.|+|.|.+|+.+++.++..|.+|++.+++.
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~ 168 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSD 168 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH
Confidence 57889999999999999999999999999998875
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.4 Score=51.06 Aligned_cols=91 Identities=16% Similarity=0.249 Sum_probs=56.4
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCC--EEEEECCCC--CCCC---ccc-----cCC----ceecCCHHhhhcCCcEEEEc
Q 007040 163 LVLGIVGR-SASARALATRSLSFKM--SVLYFDVPE--GKGK---VTF-----PSA----ARRMDTLNDLLAASDVISLH 225 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafG~--~V~~~dr~~--~~~~---~~~-----~~g----~~~~~sL~eLL~~sDvVil~ 225 (620)
++|+|||. |.+|..+|..|...|. +|+.+|+.. .... ... ..+ +....+. +.+..||+|+++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~-~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDL-SDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCH-HHhCCCCEEEEe
Confidence 47999997 9999999999998876 599999854 2111 000 011 1122344 458999999999
Q ss_pred ccCChh---hH--------hhcC--HHHhhccCCCcEEEEcC
Q 007040 226 CAVTDE---TI--------QIIN--AECLQHIKPGAFLVNTG 254 (620)
Q Consensus 226 lPlT~~---T~--------~lI~--~~~L~~MK~gAiLINvg 254 (620)
...... ++ .++. ...+....|++++|+++
T Consensus 80 ag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~ 121 (309)
T cd05294 80 AGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVT 121 (309)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 863221 21 1121 12344455677888776
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.27 Score=49.04 Aligned_cols=39 Identities=18% Similarity=0.160 Sum_probs=34.7
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~ 195 (620)
...|++.+|.|||+|.+|.++|+.|...|. ++..+|...
T Consensus 14 q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 14 QNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred HHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 356899999999999999999999999999 588888664
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.33 Score=51.52 Aligned_cols=89 Identities=11% Similarity=0.191 Sum_probs=57.0
Q ss_pred EEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC----------ccccCCceecCCHHhhhcCCcEEEEcccCC--h-h
Q 007040 167 IVGRSASARALATRSLSFKM--SVLYFDVPEGKGK----------VTFPSAARRMDTLNDLLAASDVISLHCAVT--D-E 231 (620)
Q Consensus 167 IIGlG~IG~~vA~~LkafG~--~V~~~dr~~~~~~----------~~~~~g~~~~~sL~eLL~~sDvVil~lPlT--~-~ 231 (620)
|||.|.+|..+|..|...+. ++..+|....... ...........+-.+.+++||+|+++.-.. + .
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~rk~g~ 80 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKPGE 80 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCCCCCCCC
Confidence 69999999999999987666 7999998764322 001111222223457889999999976542 1 1
Q ss_pred --------hHhhcC--HHHhhccCCCcEEEEcCC
Q 007040 232 --------TIQIIN--AECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 232 --------T~~lI~--~~~L~~MK~gAiLINvgR 255 (620)
+..++. ...+....|.+++|+++-
T Consensus 81 ~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 114 (299)
T TIGR01771 81 TRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATN 114 (299)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 222221 234445678999999873
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.71 Score=42.99 Aligned_cols=32 Identities=13% Similarity=0.111 Sum_probs=29.3
Q ss_pred EEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 007040 164 VLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~ 195 (620)
+|.|||+|.+|..+|+.|...|+ ++..+|...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 48999999999999999999999 799999764
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.37 Score=51.43 Aligned_cols=70 Identities=11% Similarity=0.008 Sum_probs=49.2
Q ss_pred eecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCc----c----------ccCCceecCCHHhhhcCCcEEE
Q 007040 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKV----T----------FPSAARRMDTLNDLLAASDVIS 223 (620)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~----~----------~~~g~~~~~sL~eLL~~sDvVi 223 (620)
.+.+++|.|.|. |-||+.+++.|...|++|.+..+....... . ..........+.+++..+|+|+
T Consensus 7 ~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 86 (342)
T PLN02214 7 SPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF 86 (342)
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence 367899999997 999999999999999999999876532110 0 0001112234667788899888
Q ss_pred EcccC
Q 007040 224 LHCAV 228 (620)
Q Consensus 224 l~lPl 228 (620)
.+...
T Consensus 87 h~A~~ 91 (342)
T PLN02214 87 HTASP 91 (342)
T ss_pred EecCC
Confidence 77643
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.42 Score=48.43 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=33.6
Q ss_pred eecCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 159 RCRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 159 ~L~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
.+.|+++.|.| .|.||.++|+.|...|++|+..+++..
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~ 41 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEP 41 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcc
Confidence 46899999998 469999999999999999999998754
|
|
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.13 Score=46.43 Aligned_cols=86 Identities=15% Similarity=0.116 Sum_probs=54.4
Q ss_pred eCChhhHHHHHHHhhC----CCEEEEE-CCC--CCCCCccccCCceecCCHHhhhc--CCcEEEEcccCChhhHhhcCHH
Q 007040 169 GRSASARALATRSLSF----KMSVLYF-DVP--EGKGKVTFPSAARRMDTLNDLLA--ASDVISLHCAVTDETIQIINAE 239 (620)
Q Consensus 169 GlG~IG~~vA~~Lkaf----G~~V~~~-dr~--~~~~~~~~~~g~~~~~sL~eLL~--~sDvVil~lPlT~~T~~lI~~~ 239 (620)
|+|.||+.+++.+... +++|.++ +++ ................++++++. ..|+|+=|.+..+- . .-
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~-~----~~ 75 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAV-A----EY 75 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHH-H----HH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHH-H----HH
Confidence 8999999999999865 6776654 565 11111111123345678999998 89999999554322 2 23
Q ss_pred HhhccCCCcEEEEcCCChhh
Q 007040 240 CLQHIKPGAFLVNTGSSQLL 259 (620)
Q Consensus 240 ~L~~MK~gAiLINvgRG~vV 259 (620)
....|+.|.-+|-.+-+.+.
T Consensus 76 ~~~~L~~G~~VVt~nk~ala 95 (117)
T PF03447_consen 76 YEKALERGKHVVTANKGALA 95 (117)
T ss_dssp HHHHHHTTCEEEES-HHHHH
T ss_pred HHHHHHCCCeEEEECHHHhh
Confidence 45567789999999888888
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.67 Score=49.85 Aligned_cols=91 Identities=15% Similarity=0.166 Sum_probs=57.7
Q ss_pred EEEEEeC-ChhhHHHHHHHhhCC-------CEEEEECCCCCC--CC---ccccC-------CceecCCHHhhhcCCcEEE
Q 007040 164 VLGIVGR-SASARALATRSLSFK-------MSVLYFDVPEGK--GK---VTFPS-------AARRMDTLNDLLAASDVIS 223 (620)
Q Consensus 164 tVGIIGl-G~IG~~vA~~LkafG-------~~V~~~dr~~~~--~~---~~~~~-------g~~~~~sL~eLL~~sDvVi 223 (620)
+|+|+|. |.+|..+|..|...+ .+|..+|+.... .. ....+ .+....++.+.++.||+|+
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiVI 83 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVAI 83 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEEE
Confidence 5999999 999999999998744 489999985422 11 00110 1112356778899999999
Q ss_pred EcccCCh---hhHh-hc--CH-------HHhhcc-CCCcEEEEcC
Q 007040 224 LHCAVTD---ETIQ-II--NA-------ECLQHI-KPGAFLVNTG 254 (620)
Q Consensus 224 l~lPlT~---~T~~-lI--~~-------~~L~~M-K~gAiLINvg 254 (620)
.+.-... .++. ++ |. ..+... +|++++|.++
T Consensus 84 ~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs 128 (325)
T cd01336 84 LVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG 128 (325)
T ss_pred EeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 8765422 1211 11 22 233444 5789999887
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.16 Score=54.67 Aligned_cols=67 Identities=10% Similarity=0.039 Sum_probs=44.0
Q ss_pred EEEEEeCChhhHH-HHHHHhh--CCCEEE-EECCCCCCCCccccC-CceecCCHHhhhc--CCcEEEEcccCCh
Q 007040 164 VLGIVGRSASARA-LATRSLS--FKMSVL-YFDVPEGKGKVTFPS-AARRMDTLNDLLA--ASDVISLHCAVTD 230 (620)
Q Consensus 164 tVGIIGlG~IG~~-vA~~Lka--fG~~V~-~~dr~~~~~~~~~~~-g~~~~~sL~eLL~--~sDvVil~lPlT~ 230 (620)
++||||+|.|++. .+..+.. -+++|. ++|+........... +...+.+++++|. +.|+|++++|...
T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~ 76 (344)
T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADS 76 (344)
T ss_pred EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchH
Confidence 6999999998864 3454432 367776 578865332211111 2345678999996 5699999999653
|
|
| >cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF) | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.46 Score=42.86 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=57.3
Q ss_pred eEEEEEEecCCceEEeeecccccceEEeeeccccCCCccceEEE-EecCccccccccccCCceeeecccceEEEeecccc
Q 007040 507 YVVALYARDRPALHISRQRHKGGGWILETMSNVTKRDPAAQFLI-CKSKDTIGLRSFTAGGKLLQINRRMEFVFASHSFD 585 (620)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (620)
-.|+|++ ..|.||+.+. .|. ++.+.+ .+|..+|-+ +.+..++=|||- .||.|.+++.=-+....|+-+
T Consensus 44 g~v~Lrs--~~G~yls~~~--~g~----l~~~~~-~~~~e~F~~e~~~~g~~al~~~--~G~yl~~~~~g~l~~~~~~~~ 112 (119)
T cd00257 44 GKYALRS--HDGKYLSADS--DGG----VQLEGH-PNADCRFTLEFHGDGKWALRAE--NGRYLGGDGSGTLKASSETVG 112 (119)
T ss_pred CeEEEEE--CCCcEEEEEC--CCC----EEecCC-CCCCcEEEEEECCCCeEEEEcC--CCCEEeecCCCeEEEecCCCC
Confidence 4568886 6999999863 443 244566 789999999 888789999965 999999987555555556679
Q ss_pred cccccee
Q 007040 586 AWESWAI 592 (620)
Q Consensus 586 ~~~~~~~ 592 (620)
-||.|.+
T Consensus 113 ~~e~f~~ 119 (119)
T cd00257 113 PDELFEL 119 (119)
T ss_pred ccceecC
Confidence 9999874
|
|
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.86 Score=50.17 Aligned_cols=108 Identities=11% Similarity=0.038 Sum_probs=68.1
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc----c--cCCceec--CCHHhhhcCCcEEEEcc--cC-Chhh
Q 007040 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT----F--PSAARRM--DTLNDLLAASDVISLHC--AV-TDET 232 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~----~--~~g~~~~--~sL~eLL~~sDvVil~l--Pl-T~~T 232 (620)
++.|||+|.+|.++|+.|+..|++|.++|......... . ..|+... .+ .+.+..+|+|+..- |. .|+.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~~~~p~~ 79 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIPPDHPLV 79 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCCCCCHHH
Confidence 37899999999999999999999999999765422211 1 1233321 23 34567899888754 32 2221
Q ss_pred H-------hhcCH-HHhhc-cCCCcEEEEcCCChhhcHHHHHHHHHcCC
Q 007040 233 I-------QIINA-ECLQH-IKPGAFLVNTGSSQLLDDCAVKQLLIDGT 272 (620)
Q Consensus 233 ~-------~lI~~-~~L~~-MK~gAiLINvgRG~vVDe~AL~~AL~~G~ 272 (620)
. .++.. +.+.. ++...+-|.-+.|+.--..-+...|+...
T Consensus 80 ~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g 128 (433)
T TIGR01087 80 QAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAG 128 (433)
T ss_pred HHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 1 12333 23333 34345556666799888888888887543
|
|
| >COG0281 SfcA Malic enzyme [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.36 E-value=4.2 Score=45.38 Aligned_cols=185 Identities=16% Similarity=0.133 Sum_probs=118.1
Q ss_pred hcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHH
Q 007040 102 DLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRS 181 (620)
Q Consensus 102 erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~L 181 (620)
+..|+|.|..-.. +|=-+++-+|+.+|-. .+.|...+|.|.|.|.-|-++|+.+
T Consensus 165 ~~~IPvFhDDqqG---Taiv~lA~llnalk~~-----------------------gk~l~d~kiv~~GAGAAgiaia~~l 218 (432)
T COG0281 165 RMNIPVFHDDQQG---TAIVTLAALLNALKLT-----------------------GKKLKDQKIVINGAGAAGIAIADLL 218 (432)
T ss_pred cCCCCcccccccH---HHHHHHHHHHHHHHHh-----------------------CCCccceEEEEeCCcHHHHHHHHHH
Confidence 4578888875543 3444566677666421 1358899999999999999999999
Q ss_pred hhCCC---EEEEECCCCCCCC--cc--cc-CCce-------ecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCC
Q 007040 182 LSFKM---SVLYFDVPEGKGK--VT--FP-SAAR-------RMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKP 246 (620)
Q Consensus 182 kafG~---~V~~~dr~~~~~~--~~--~~-~g~~-------~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~ 246 (620)
++.|+ +|+.+|+..--.+ .. .. .... .... ++.+..+|+++-+-- .|.|.++.++.|.+
T Consensus 219 ~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~~~adv~iG~S~-----~G~~t~e~V~~Ma~ 292 (432)
T COG0281 219 VAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLALAGADVLIGVSG-----VGAFTEEMVKEMAK 292 (432)
T ss_pred HHhCCCcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccccCCCEEEEcCC-----CCCcCHHHHHHhcc
Confidence 99999 6999998742111 01 00 0000 0011 447788998875432 28999999999999
Q ss_pred CcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEEEcCCCCCCcH-----HHHHHHHHHHHHH
Q 007040 247 GAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSE-----EVWMEIRDKAISV 321 (620)
Q Consensus 247 gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVIlTPHiAg~T~-----ea~~~~~~~a~en 321 (620)
..++.=.+-....-..+.+..-.+ |+++=.+-.|.+++ +..||++=|.+.-..- ..-++|.-.+++.
T Consensus 293 ~PiIfalaNP~pEi~Pe~a~~~~~----~aaivaTGrsd~Pn----QvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~A 364 (432)
T COG0281 293 HPIIFALANPTPEITPEDAKEWGD----GAAIVATGRSDYPN----QVNNVLIFPGIFRGALDVRAKTITDEMKIAAAEA 364 (432)
T ss_pred CCEEeecCCCCccCCHHHHhhcCC----CCEEEEeCCCCCcc----cccceeEcchhhhhhHhhccccCCHHHHHHHHHH
Confidence 999998887653221221111111 23333333344333 7789999998654332 2357777778888
Q ss_pred HHHHH
Q 007040 322 LQTFF 326 (620)
Q Consensus 322 L~~~L 326 (620)
|..+.
T Consensus 365 iA~~~ 369 (432)
T COG0281 365 IADLA 369 (432)
T ss_pred HHhhc
Confidence 88863
|
|
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.61 Score=50.29 Aligned_cols=109 Identities=13% Similarity=0.079 Sum_probs=63.3
Q ss_pred EEEEEeCChhhHHHHHHHhh--------CCCEEEEE-CCCCCCCCcc----------ccCC---ceecC--CHHhhh-cC
Q 007040 164 VLGIVGRSASARALATRSLS--------FKMSVLYF-DVPEGKGKVT----------FPSA---ARRMD--TLNDLL-AA 218 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~Lka--------fG~~V~~~-dr~~~~~~~~----------~~~g---~~~~~--sL~eLL-~~ 218 (620)
+|+|||+|++|+.+++.|.. ++++|.++ |++....... ...+ ..... ++++++ ..
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~~ 81 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEIK 81 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcCC
Confidence 69999999999999999875 56776654 5443111000 0000 01111 455553 45
Q ss_pred CcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhh-cHHHHHHHHHcCCc
Q 007040 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLL-DDCAVKQLLIDGTL 273 (620)
Q Consensus 219 sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vV-De~AL~~AL~~G~I 273 (620)
+|+|+=+.|....-... -.-....|+.|.-+|-..-|.+. .-..|.++.+++..
T Consensus 82 ~DVvVE~t~~~~~g~~~-~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~ 136 (326)
T PRK06392 82 PDVIVDVTPASKDGIRE-KNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRR 136 (326)
T ss_pred CCEEEECCCCCCcCchH-HHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCC
Confidence 79999998753210001 11234557788888888777775 44556666665543
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.15 Score=59.40 Aligned_cols=91 Identities=12% Similarity=0.066 Sum_probs=60.5
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCce----ecCC---HHh-hhcCCcEEEEcccCChhhH
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR----RMDT---LND-LLAASDVISLHCAVTDETI 233 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~----~~~s---L~e-LL~~sDvVil~lPlT~~T~ 233 (620)
..++-|+|+|++|+.+|+.|.+.|.++++.|.++...+.....+.. ...+ |++ -+.++|.|+++++..+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~ 479 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL 479 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence 4679999999999999999999999999999887543322112221 1122 222 2568999999998776655
Q ss_pred hhcCHHHhhccCCCcEEEEcC
Q 007040 234 QIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvg 254 (620)
.++ ...+.+.|+..+|--+
T Consensus 480 ~i~--~~ar~~~p~~~iiaRa 498 (621)
T PRK03562 480 QLV--ELVKEHFPHLQIIARA 498 (621)
T ss_pred HHH--HHHHHhCCCCeEEEEE
Confidence 543 2344455665555433
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.43 Score=50.65 Aligned_cols=39 Identities=18% Similarity=0.144 Sum_probs=35.5
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~ 195 (620)
+..|...+|.|+|+|.+|.++|+.|...|. +|..+|...
T Consensus 14 q~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 14 MKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred HHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 467899999999999999999999999999 799999765
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.91 Score=48.84 Aligned_cols=98 Identities=17% Similarity=0.154 Sum_probs=60.6
Q ss_pred EEEEEeC-ChhhHHHHHHHhhCCC-------EEEEECCCC--CCCC---ccccC-------CceecCCHHhhhcCCcEEE
Q 007040 164 VLGIVGR-SASARALATRSLSFKM-------SVLYFDVPE--GKGK---VTFPS-------AARRMDTLNDLLAASDVIS 223 (620)
Q Consensus 164 tVGIIGl-G~IG~~vA~~LkafG~-------~V~~~dr~~--~~~~---~~~~~-------g~~~~~sL~eLL~~sDvVi 223 (620)
+|+|||. |.||..+|..|...|. .+..+|... .... ....+ ......+..+.+++||+|+
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV 81 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI 81 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence 6999999 9999999999886443 599999876 2221 00001 1111245678899999999
Q ss_pred EcccCC--h-hhHh--------hcC--HHHhhcc-CCCcEEEEcCCChhhcHHH
Q 007040 224 LHCAVT--D-ETIQ--------IIN--AECLQHI-KPGAFLVNTGSSQLLDDCA 263 (620)
Q Consensus 224 l~lPlT--~-~T~~--------lI~--~~~L~~M-K~gAiLINvgRG~vVDe~A 263 (620)
++.-.. + +|+- ++. ...+... +|++++|.++ ..+|.-+
T Consensus 82 itAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t 133 (323)
T cd00704 82 LVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNA 133 (323)
T ss_pred EeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHH
Confidence 876432 2 1222 121 1234445 5888998885 4455444
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.23 Score=52.07 Aligned_cols=87 Identities=17% Similarity=0.105 Sum_probs=49.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCE-EEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHH
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMS-VLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAE 239 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~-V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~ 239 (620)
.|.++.|+|.|.||...++.++.+|++ |+++|+.......+..... .+.-++.-...|+|+-+..... .+ ..
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~--i~~~~~~~~g~Dvvid~~G~~~----~~-~~ 216 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEV--LDPEKDPRRDYRAIYDASGDPS----LI-DT 216 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccc--cChhhccCCCCCEEEECCCCHH----HH-HH
Confidence 467899999999999999999999997 5566665432221111111 1111111123566666655321 11 23
Q ss_pred HhhccCCCcEEEEcC
Q 007040 240 CLQHIKPGAFLVNTG 254 (620)
Q Consensus 240 ~L~~MK~gAiLINvg 254 (620)
.++.|+++..++.+|
T Consensus 217 ~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 217 LVRRLAKGGEIVLAG 231 (308)
T ss_pred HHHhhhcCcEEEEEe
Confidence 456666666666664
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.75 Score=49.54 Aligned_cols=92 Identities=13% Similarity=0.170 Sum_probs=58.1
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCC-------EEEEECCCCCC--CC--------c--cccCCceecCCHHhhhcCCcEE
Q 007040 163 LVLGIVGR-SASARALATRSLSFKM-------SVLYFDVPEGK--GK--------V--TFPSAARRMDTLNDLLAASDVI 222 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafG~-------~V~~~dr~~~~--~~--------~--~~~~g~~~~~sL~eLL~~sDvV 222 (620)
.+|+|||. |.+|..+|-.|...|. ++..+|..... .. . ..........+..+.+++||+|
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvV 83 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAA 83 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEE
Confidence 46999998 9999999999987665 79999985421 11 0 0101112223556788999999
Q ss_pred EEcccCCh---hhHh-hc--CH-------HHhhccCC-CcEEEEcC
Q 007040 223 SLHCAVTD---ETIQ-II--NA-------ECLQHIKP-GAFLVNTG 254 (620)
Q Consensus 223 il~lPlT~---~T~~-lI--~~-------~~L~~MK~-gAiLINvg 254 (620)
+++.-... +|+. ++ |. ..+....| .+++|.++
T Consensus 84 VitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 129 (323)
T TIGR01759 84 LLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG 129 (323)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 99765421 2222 11 11 23334444 89999987
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.2 Score=59.26 Aligned_cols=85 Identities=16% Similarity=0.219 Sum_probs=60.6
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC------------------------ccccC--Cce-
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK------------------------VTFPS--AAR- 207 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~--~V~~~dr~~~~~~------------------------~~~~~--g~~- 207 (620)
...|.+++|+|||+| +|..+|..|...|. +++.+|...-... ..... .+.
T Consensus 102 Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~ 180 (722)
T PRK07877 102 QERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEV 180 (722)
T ss_pred HHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEE
Confidence 356899999999999 89999999998884 7888876421100 00000 011
Q ss_pred -----ecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhc
Q 007040 208 -----RMDTLNDLLAASDVISLHCAVTDETIQIINAECLQH 243 (620)
Q Consensus 208 -----~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~ 243 (620)
..+++++++..+|+|+-|+- +-+++.+|+.....+
T Consensus 181 ~~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~ 220 (722)
T PRK07877 181 FTDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARAR 220 (722)
T ss_pred EeccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence 12367889999999998886 568899998876665
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.25 Score=51.89 Aligned_cols=65 Identities=15% Similarity=0.075 Sum_probs=46.0
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCc-------eecCCHHhhhcCCcEEEEccc
Q 007040 163 LVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA-------RRMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~-------~~~~sL~eLL~~sDvVil~lP 227 (620)
++|.|.| .|.||+.+++.|...|++|.+++|+..........++ ....++.+++..+|+|+.+.+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 4688998 6999999999999999999999987532210001111 123356778899999887643
|
|
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.24 Score=55.24 Aligned_cols=103 Identities=12% Similarity=0.208 Sum_probs=64.3
Q ss_pred cEEEEEeCChhhHHHHH--HH---hhC-CCEEEEECCCCCCCC----------ccc--cCCceecCCHHhhhcCCcEEEE
Q 007040 163 LVLGIVGRSASARALAT--RS---LSF-KMSVLYFDVPEGKGK----------VTF--PSAARRMDTLNDLLAASDVISL 224 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~--~L---kaf-G~~V~~~dr~~~~~~----------~~~--~~g~~~~~sL~eLL~~sDvVil 224 (620)
++|+|||.|.+|...+- .+ .++ |.+|+.||....... ... ...+....++.+.+..||+|+.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ 81 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN 81 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence 47999999999965544 22 233 569999998764322 001 1123335678899999999999
Q ss_pred cccCC--h--------------------hhH-------h-----hc--CHHHhhccCCCcEEEEcCCChhhcHHHHH
Q 007040 225 HCAVT--D--------------------ETI-------Q-----II--NAECLQHIKPGAFLVNTGSSQLLDDCAVK 265 (620)
Q Consensus 225 ~lPlT--~--------------------~T~-------~-----lI--~~~~L~~MK~gAiLINvgRG~vVDe~AL~ 265 (620)
++-.. . +|. . ++ -.+.+....|+++|||++-..=+-..++.
T Consensus 82 ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~~ 158 (431)
T PRK15076 82 AIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAMN 158 (431)
T ss_pred eeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHh
Confidence 88653 1 110 0 01 01234455689999999886645555554
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.51 Score=50.76 Aligned_cols=98 Identities=15% Similarity=0.140 Sum_probs=59.5
Q ss_pred EEEEEeC-ChhhHHHHHHHhhCCC-------EEEEECCCCCC--CC---cccc-------CCceecCCHHhhhcCCcEEE
Q 007040 164 VLGIVGR-SASARALATRSLSFKM-------SVLYFDVPEGK--GK---VTFP-------SAARRMDTLNDLLAASDVIS 223 (620)
Q Consensus 164 tVGIIGl-G~IG~~vA~~LkafG~-------~V~~~dr~~~~--~~---~~~~-------~g~~~~~sL~eLL~~sDvVi 223 (620)
+|+|||. |.+|..+|..|...|+ .+..+|..... .. .... .......+..+.+++||+|+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 4899999 9999999999987555 59999985432 11 0000 11111224568889999999
Q ss_pred EcccCCh---hhH-hhc--C-------HHHhhcc-CCCcEEEEcCCChhhcHHH
Q 007040 224 LHCAVTD---ETI-QII--N-------AECLQHI-KPGAFLVNTGSSQLLDDCA 263 (620)
Q Consensus 224 l~lPlT~---~T~-~lI--~-------~~~L~~M-K~gAiLINvgRG~vVDe~A 263 (620)
+..-... +|+ .++ | ...+... +|.+++|+++ ..+|.-.
T Consensus 81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs--NPvDv~t 132 (324)
T TIGR01758 81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG--NPANTNA 132 (324)
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence 8765421 121 122 1 1234445 5888999887 3344444
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=92.03 E-value=0.3 Score=52.83 Aligned_cols=67 Identities=16% Similarity=0.042 Sum_probs=44.9
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc--CC-----ceecCCHHhhhcCCcEEEEccc
Q 007040 161 RGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFP--SA-----ARRMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~--~g-----~~~~~sL~eLL~~sDvVil~lP 227 (620)
.+++|.|.|- |-||+.+++.|...|++|+++++.......... .. ......+..++..+|+|+-+..
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~Aa 94 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLAA 94 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEccc
Confidence 5688999987 999999999999999999999975421110000 00 1111234455678898886653
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.55 Score=50.39 Aligned_cols=88 Identities=13% Similarity=0.130 Sum_probs=57.4
Q ss_pred EEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC---c----------------------cccCC--ce----ecCC
Q 007040 164 VLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK---V----------------------TFPSA--AR----RMDT 211 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~---~----------------------~~~~g--~~----~~~s 211 (620)
+|.|||+|.+|.++|+.|...|. ++..+|...-... . ..... +. ...+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~ 80 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD 80 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 48999999999999999999998 7888886532111 0 00000 00 1111
Q ss_pred ---HHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCC
Q 007040 212 ---LNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 212 ---L~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgR 255 (620)
..+++.+.|+|+.++ .+.+++..++.-.... +.-+|..+.
T Consensus 81 ~~~~~~f~~~~DvVv~a~-Dn~~ar~~in~~c~~~---~ip~I~~gt 123 (312)
T cd01489 81 PDFNVEFFKQFDLVFNAL-DNLAARRHVNKMCLAA---DVPLIESGT 123 (312)
T ss_pred ccchHHHHhcCCEEEECC-CCHHHHHHHHHHHHHC---CCCEEEEec
Confidence 236788899988887 4566777787765553 345777654
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.16 Score=50.83 Aligned_cols=67 Identities=21% Similarity=0.246 Sum_probs=47.3
Q ss_pred EEEEEeCChhhHHHHHHH--hhCCCEEE-EECCCCCCCCccc-cCCceecCCHHhhhc--CCcEEEEcccCCh
Q 007040 164 VLGIVGRSASARALATRS--LSFKMSVL-YFDVPEGKGKVTF-PSAARRMDTLNDLLA--ASDVISLHCAVTD 230 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~L--kafG~~V~-~~dr~~~~~~~~~-~~g~~~~~sL~eLL~--~sDvVil~lPlT~ 230 (620)
++.|||.|++|++++..= +..||++. +||..+...-... ...+...++|+..++ +.|+.++|+|...
T Consensus 86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~~ 158 (211)
T COG2344 86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAEH 158 (211)
T ss_pred eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccHHH
Confidence 589999999999999763 46789755 7887764322111 122345667888887 6889999999543
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.14 Score=59.95 Aligned_cols=39 Identities=23% Similarity=0.219 Sum_probs=34.9
Q ss_pred eeecCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 158 RRCRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 158 ~~L~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
..+.|+++.|.| .|.||..+|+.|...|++|++++++..
T Consensus 418 ~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~ 457 (681)
T PRK08324 418 KPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEE 457 (681)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHH
Confidence 356899999999 699999999999999999999998763
|
|
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.65 Score=50.34 Aligned_cols=94 Identities=19% Similarity=0.204 Sum_probs=65.7
Q ss_pred cCcEEEEEeCChhhHHHHHHHhh-------CCCEEE--EECCCCCCC-C------------------ccccCCceecCCH
Q 007040 161 RGLVLGIVGRSASARALATRSLS-------FKMSVL--YFDVPEGKG-K------------------VTFPSAARRMDTL 212 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lka-------fG~~V~--~~dr~~~~~-~------------------~~~~~g~~~~~sL 212 (620)
.-.+|+|||.|+=|.++|+.+.. |..+|. +|.-..... . ...+..+....+|
T Consensus 20 ~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl 99 (372)
T KOG2711|consen 20 DPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDL 99 (372)
T ss_pred CceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchH
Confidence 44679999999999999998852 333444 333222110 0 1233445667889
Q ss_pred HhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCC
Q 007040 213 NDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 213 ~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG 256 (620)
.+++.+||+++..+|.+ -..-|-.++..+.|+++..|...-|
T Consensus 100 ~ea~~dADilvf~vPhQ--f~~~ic~~l~g~vk~~~~aISL~KG 141 (372)
T KOG2711|consen 100 VEAAKDADILVFVVPHQ--FIPRICEQLKGYVKPGATAISLIKG 141 (372)
T ss_pred HHHhccCCEEEEeCChh--hHHHHHHHHhcccCCCCeEEEeecc
Confidence 99999999999999966 2233345677889999999998766
|
|
| >PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.34 Score=54.24 Aligned_cols=108 Identities=14% Similarity=0.153 Sum_probs=64.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc--cc-cCCceecCCHHhhhcCCcEEEEcc--cCC-hhh--
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV--TF-PSAARRMDTLNDLLAASDVISLHC--AVT-DET-- 232 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~--~~-~~g~~~~~sL~eLL~~sDvVil~l--PlT-~~T-- 232 (620)
.|++|+|+|+|..|.++|+.|+. |++|+++|........ .. ...... ....+.+..+|+|+..= |.+ |..
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~vV~SPgI~~~~p~~~~ 82 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIA-ALSDSRWQNLDKIVLSPGIPLTHEIVKI 82 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceec-cCChhHhhCCCEEEECCCCCCCCHHHHH
Confidence 57899999999999999999996 9999999954322110 00 000111 11234567899888753 322 221
Q ss_pred -----HhhcCHHHh--hccCC-CcEEEEcCCChhhcHHHHHHHHHc
Q 007040 233 -----IQIINAECL--QHIKP-GAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 233 -----~~lI~~~~L--~~MK~-gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
..++++-.| ..+++ ..+-|--+-|+.--..-|...|+.
T Consensus 83 a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~ 128 (454)
T PRK01368 83 AKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNS 128 (454)
T ss_pred HHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 123433333 23333 234444456888888888888875
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.75 Score=49.61 Aligned_cols=99 Identities=16% Similarity=0.153 Sum_probs=60.0
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCC-------EEEEECCCCCC--CC---c-------cccCCceecCCHHhhhcCCcEE
Q 007040 163 LVLGIVGR-SASARALATRSLSFKM-------SVLYFDVPEGK--GK---V-------TFPSAARRMDTLNDLLAASDVI 222 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafG~-------~V~~~dr~~~~--~~---~-------~~~~g~~~~~sL~eLL~~sDvV 222 (620)
.+|+|||. |.+|..+|-.|...|+ ++..+|..... .. . .+........+..+.+++||+|
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV 84 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA 84 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence 47999998 9999999998875444 79999985421 11 0 0101122234566888999999
Q ss_pred EEcccCC--h-hhHh-hc--CHH-------Hhhc-cCCCcEEEEcCCChhhcHHH
Q 007040 223 SLHCAVT--D-ETIQ-II--NAE-------CLQH-IKPGAFLVNTGSSQLLDDCA 263 (620)
Q Consensus 223 il~lPlT--~-~T~~-lI--~~~-------~L~~-MK~gAiLINvgRG~vVDe~A 263 (620)
+++.-.. + +|+- ++ |.+ .+.. .+|.+++|.++ ..+|.-.
T Consensus 85 VitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t 137 (326)
T PRK05442 85 LLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG--NPANTNA 137 (326)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--CchHHHH
Confidence 9976531 1 1222 11 211 2333 44789999988 3444444
|
|
| >PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.36 Score=53.26 Aligned_cols=110 Identities=13% Similarity=0.081 Sum_probs=66.8
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-ccccCCceec--CCHHhhhcCCcEEEEcccCChhhHh--
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-VTFPSAARRM--DTLNDLLAASDVISLHCAVTDETIQ-- 234 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~-~~~~~g~~~~--~sL~eLL~~sDvVil~lPlT~~T~~-- 234 (620)
+.++++.|||+|.+|.+.++.|+..|++|.++|....... .....++... ....+.+...|+|+.. |.-+....
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~vv~s-pgi~~~~~~~ 82 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLIVAS-PGIALAHPSL 82 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEEEEC-CCCCCCCHHH
Confidence 5688999999999999999999999999999997653221 1122233221 1122445678876653 33222111
Q ss_pred ---------hcCH-HHhhcc-CCCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 235 ---------IINA-ECLQHI-KPGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 235 ---------lI~~-~~L~~M-K~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
++.. +++..+ +.-.+-|--+.|+.--..-|...|+.
T Consensus 83 ~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 129 (438)
T PRK03806 83 SAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA 129 (438)
T ss_pred HHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 2222 333333 32344455556888777778888874
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.71 E-value=0.34 Score=53.66 Aligned_cols=111 Identities=10% Similarity=0.106 Sum_probs=68.7
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-cccc---CCceec--CCHHhhhcCCcEEEEcccCCh---
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-VTFP---SAARRM--DTLNDLLAASDVISLHCAVTD--- 230 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~-~~~~---~g~~~~--~sL~eLL~~sDvVil~lPlT~--- 230 (620)
+.++++.|+|.|.+|.++|+.|...|+.|.++|....... .... .++... ..-+.++..+|+|+..--..+
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p 82 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQP 82 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCH
Confidence 4688999999999999999999999999999997654311 0111 233221 112344567999988543332
Q ss_pred hhH-------hhcC-HHHhhc-cC---CCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 231 ETI-------QIIN-AECLQH-IK---PGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 231 ~T~-------~lI~-~~~L~~-MK---~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
... .++. .+.+.. ++ ...|-|--+-|+.--..-+...|+.
T Consensus 83 ~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~ 134 (445)
T PRK04308 83 DIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIK 134 (445)
T ss_pred HHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 211 1222 233333 32 2345555556888777777788865
|
|
| >PRK08192 aspartate carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.70 E-value=0.68 Score=50.21 Aligned_cols=67 Identities=16% Similarity=0.133 Sum_probs=48.8
Q ss_pred eecCcEEEEEeC---ChhhHHHHHHHh-hCCCEEEEECCCCCCCCccc-------cCCceecCCHHhhhcCCcEEEEc
Q 007040 159 RCRGLVLGIVGR---SASARALATRSL-SFKMSVLYFDVPEGKGKVTF-------PSAARRMDTLNDLLAASDVISLH 225 (620)
Q Consensus 159 ~L~GktVGIIGl---G~IG~~vA~~Lk-afG~~V~~~dr~~~~~~~~~-------~~g~~~~~sL~eLL~~sDvVil~ 225 (620)
.+.|.+|++||- +++..+++..|. -+|++|.+..|..-.....+ ...+....++++.++.+|||..-
T Consensus 156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 233 (338)
T PRK08192 156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLT 233 (338)
T ss_pred CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEc
Confidence 368999999999 577888888766 44999999998653211111 11234567999999999999983
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=91.66 E-value=0.29 Score=51.87 Aligned_cols=90 Identities=18% Similarity=0.199 Sum_probs=56.0
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCH-HhhhcCCcEEEEcccCChhhHhhcCHH
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTL-NDLLAASDVISLHCAVTDETIQIINAE 239 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL-~eLL~~sDvVil~lPlT~~T~~lI~~~ 239 (620)
.|.+|.|.|.|.+|...+..++++|++|++.+++....+.....|.....+. +..-...|+++.+.... . .+ ..
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~-~---~~-~~ 239 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG-G---LV-PP 239 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH-H---HH-HH
Confidence 4889999999999999999999999999999887654332233333221111 11112346665554432 1 12 23
Q ss_pred HhhccCCCcEEEEcCC
Q 007040 240 CLQHIKPGAFLVNTGS 255 (620)
Q Consensus 240 ~L~~MK~gAiLINvgR 255 (620)
.++.++++..++.+|-
T Consensus 240 ~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 240 ALEALDRGGVLAVAGI 255 (329)
T ss_pred HHHhhCCCcEEEEEec
Confidence 5666777777777653
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=91.63 E-value=0.39 Score=50.00 Aligned_cols=37 Identities=24% Similarity=0.139 Sum_probs=31.8
Q ss_pred eeecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCC
Q 007040 158 RRCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVP 194 (620)
Q Consensus 158 ~~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~ 194 (620)
..+.|+++.|.|. |.||+++|+.|...|++|++..+.
T Consensus 51 ~~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~ 88 (300)
T PRK06128 51 GRLQGRKALITGADSGIGRATAIAFAREGADIALNYLP 88 (300)
T ss_pred cccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 3578999999975 899999999999999999877654
|
|
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.62 E-value=0.28 Score=57.78 Aligned_cols=38 Identities=11% Similarity=0.018 Sum_probs=33.3
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCC
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVP 194 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~ 194 (620)
...|++.+|+|||+|.+|..+|..|...|. ++..+|..
T Consensus 38 Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D 76 (679)
T PRK14851 38 QERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFD 76 (679)
T ss_pred HHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 357899999999999999999999999998 67777754
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.57 E-value=0.32 Score=54.27 Aligned_cols=111 Identities=14% Similarity=0.066 Sum_probs=68.1
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-----ccccCCceec--CCHHhhhcCCcEEEEccc---C
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-----VTFPSAARRM--DTLNDLLAASDVISLHCA---V 228 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~-----~~~~~g~~~~--~sL~eLL~~sDvVil~lP---l 228 (620)
.+.++++.|||.|.+|.++|..|+..|++|.++|....... .....|+... .... +...+|+|++..- .
T Consensus 13 ~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~-~~~~~D~Vv~s~Gi~~~ 91 (480)
T PRK01438 13 DWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPT-LPEDTDLVVTSPGWRPD 91 (480)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc-ccCCCCEEEECCCcCCC
Confidence 46789999999999999999999999999999996542111 0111233221 1121 3456899998763 3
Q ss_pred Chh-----hHh--hcCH-HHh-hccCC----CcEEEEcCCChhhcHHHHHHHHHc
Q 007040 229 TDE-----TIQ--IINA-ECL-QHIKP----GAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 229 T~~-----T~~--lI~~-~~L-~~MK~----gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
++. ..+ +++. +.+ ..+.+ ..|-|--+-|+.--..=|...|+.
T Consensus 92 ~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~ 146 (480)
T PRK01438 92 APLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRA 146 (480)
T ss_pred CHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence 332 111 2333 232 33422 234455556888777777777765
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=91.45 E-value=0.42 Score=49.62 Aligned_cols=67 Identities=13% Similarity=0.079 Sum_probs=46.3
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCc---------------cccCCceecCCHHhhhcCCcEEEE
Q 007040 161 RGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKV---------------TFPSAARRMDTLNDLLAASDVISL 224 (620)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~---------------~~~~g~~~~~sL~eLL~~sDvVil 224 (620)
.|++|.|.| .|-||+.+++.|...|++|.++++....... ...........+++++..+|+|+.
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 468899999 6999999999999999999988876432110 000011122346777888898877
Q ss_pred ccc
Q 007040 225 HCA 227 (620)
Q Consensus 225 ~lP 227 (620)
+..
T Consensus 83 ~A~ 85 (322)
T PLN02662 83 TAS 85 (322)
T ss_pred eCC
Confidence 664
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=91.43 E-value=0.68 Score=47.48 Aligned_cols=65 Identities=11% Similarity=0.036 Sum_probs=45.7
Q ss_pred EEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcc----ccCCceecCCHHhhh------cC-CcEEEEcccCC
Q 007040 165 LGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVT----FPSAARRMDTLNDLL------AA-SDVISLHCAVT 229 (620)
Q Consensus 165 VGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~----~~~g~~~~~sL~eLL------~~-sDvVil~lPlT 229 (620)
|.|+|. |.||+.+++.|...|++|.+..|++...... ........++|.+++ .. +|.|+++.|..
T Consensus 2 ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~ 78 (285)
T TIGR03649 2 ILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPI 78 (285)
T ss_pred EEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCC
Confidence 667776 9999999999999999999999887432210 111112234566666 45 89999888854
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme | Back alignment and domain information |
|---|
Probab=91.40 E-value=2.1 Score=44.75 Aligned_cols=159 Identities=13% Similarity=0.106 Sum_probs=103.8
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCC-----------EEEEECCCCC---CCC------cc---ccCCceecCCHHhh
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKM-----------SVLYFDVPEG---KGK------VT---FPSAARRMDTLNDL 215 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~-----------~V~~~dr~~~---~~~------~~---~~~g~~~~~sL~eL 215 (620)
.|.+.+|.|+|.|..|-.+|+.|...++ +++.+|+..- ... .. +........+|.|+
T Consensus 22 ~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~ea 101 (254)
T cd00762 22 KISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANPERESGDLEDA 101 (254)
T ss_pred ChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCcccccCCHHHH
Confidence 4788999999999999999999987776 6999998741 100 00 11111233589999
Q ss_pred hc--CCcEEEEcccCChhhHhhcCHHHhhccC---CCcEEEEcCCChhhcHHHHHHHHHc--C-CcceeEeecCCCCCCC
Q 007040 216 LA--ASDVISLHCAVTDETIQIINAECLQHIK---PGAFLVNTGSSQLLDDCAVKQLLID--G-TLAGCALDGAEGPQWM 287 (620)
Q Consensus 216 L~--~sDvVil~lPlT~~T~~lI~~~~L~~MK---~gAiLINvgRG~vVDe~AL~~AL~~--G-~I~GAaLDV~E~P~~~ 287 (620)
+. +.|+++=..- .-++|.++.+..|. +..++.=.|....-.|..-.++.+- | .|.+.+- |.++
T Consensus 102 v~~~kptvlIG~S~----~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtGs-----pf~p 172 (254)
T cd00762 102 VEAAKPDFLIGVSR----VGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATEGRAIFASGS-----PFHP 172 (254)
T ss_pred HHhhCCCEEEEeCC----CCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhcCCCEEEEECC-----CCCC
Confidence 99 9999986432 24799999999998 9999999998776334333333332 3 2322111 2111
Q ss_pred C------ccccCCCcEEEcCCCCCCcH-----HHHHHHHHHHHHHHHHHH
Q 007040 288 E------AWVREMPNVLILPRSADYSE-----EVWMEIRDKAISVLQTFF 326 (620)
Q Consensus 288 ~------spL~~~pNVIlTPHiAg~T~-----ea~~~~~~~a~enL~~~L 326 (620)
. ...-+..|+++=|=++-... ..-++|.-.+++.|..+.
T Consensus 173 v~~~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~v 222 (254)
T cd00762 173 VELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSV 222 (254)
T ss_pred cccCCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhhC
Confidence 1 11225679999997654322 224677777777777754
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut |
| >cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=91.29 E-value=0.39 Score=50.49 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=32.4
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
.|.++.|.|.|.+|..++..++++|++|++.++...
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~ 204 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPS 204 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHH
Confidence 577899999999999999999999999999987753
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic |
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.24 E-value=0.73 Score=49.48 Aligned_cols=35 Identities=17% Similarity=0.256 Sum_probs=31.6
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
.|.+|.|+|.|.||..++..++++|.+|++.+...
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~ 217 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSS 217 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 57899999999999999999999999998887654
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=91.23 E-value=0.32 Score=51.02 Aligned_cols=36 Identities=11% Similarity=0.020 Sum_probs=32.4
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCE-EEEECCCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMS-VLYFDVPEG 196 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~-V~~~dr~~~ 196 (620)
.|.+|.|+|.|.||..++..++.+|++ |++.+++..
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~ 199 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPE 199 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence 488999999999999999999999998 999887653
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PRK12862 malic enzyme; Reviewed | Back alignment and domain information |
|---|
Probab=91.15 E-value=2.3 Score=50.87 Aligned_cols=181 Identities=16% Similarity=0.202 Sum_probs=118.7
Q ss_pred cCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHh
Q 007040 103 LGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSL 182 (620)
Q Consensus 103 rGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~Lk 182 (620)
.+|+|.|..-.. +|=-+++-+|+.+|-. .+.+...+|.|.|.|.-|-.+|+.|.
T Consensus 160 ~~ip~f~DD~~G---Ta~v~la~l~~a~~~~-----------------------~~~~~~~~iv~~GaGaag~~~a~~l~ 213 (763)
T PRK12862 160 MKIPVFHDDQHG---TAIIVAAALLNGLKLV-----------------------GKDIEDVKLVASGAGAAALACLDLLV 213 (763)
T ss_pred CCCceEecCccc---HHHHHHHHHHHHHHHh-----------------------CCChhhcEEEEEChhHHHHHHHHHHH
Confidence 469999985433 3444566777766421 13478899999999999999999999
Q ss_pred hCCC---EEEEECCCCC----C-C--C---ccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcE
Q 007040 183 SFKM---SVLYFDVPEG----K-G--K---VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAF 249 (620)
Q Consensus 183 afG~---~V~~~dr~~~----~-~--~---~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAi 249 (620)
..|. +++.+|+..- . . . ..+... ....+|.|++..+|+++=.-- -++|+++.++.|.+..+
T Consensus 214 ~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~-~~~~~l~e~~~~~~v~iG~s~-----~g~~~~~~v~~M~~~pi 287 (763)
T PRK12862 214 SLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQK-TDARTLAEVIEGADVFLGLSA-----AGVLKPEMVKKMAPRPL 287 (763)
T ss_pred HcCCCcccEEEEcCCCeeeCCCCccccHHHHHHhhh-cccCCHHHHHcCCCEEEEcCC-----CCCCCHHHHHHhccCCE
Confidence 9999 8999997641 1 0 1 011111 123589999999999885432 47999999999999999
Q ss_pred EEEcCCChhhcHHHHHHHHHc--CCcceeEeecCCCCCCCCccccCCCcEEEcCCCCCCc-----HHHHHHHHHHHHHHH
Q 007040 250 LVNTGSSQLLDDCAVKQLLID--GTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYS-----EEVWMEIRDKAISVL 322 (620)
Q Consensus 250 LINvgRG~vVDe~AL~~AL~~--G~I~GAaLDV~E~P~~~~spL~~~pNVIlTPHiAg~T-----~ea~~~~~~~a~enL 322 (620)
+.=.+.... |..-.++.+- |.|.+.+- ...| -+..|+++=|-++-.. ....++|.-.+++.|
T Consensus 288 ifalsNP~~--E~~p~~a~~~~~~~i~atGr--s~~p-------~Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~al 356 (763)
T PRK12862 288 IFALANPTP--EILPEEARAVRPDAIIATGR--SDYP-------NQVNNVLCFPYIFRGALDVGATTINEEMKIAAVRAI 356 (763)
T ss_pred EEeCCCCcc--cCCHHHHHHhcCCEEEEECC--cCCC-------CcccceeeccchhhhHHhcCCeeCCHHHHHHHHHHH
Confidence 999998764 2222223332 23433221 1112 1467899999754332 223467777777777
Q ss_pred HHHH
Q 007040 323 QTFF 326 (620)
Q Consensus 323 ~~~L 326 (620)
..+.
T Consensus 357 a~~~ 360 (763)
T PRK12862 357 AELA 360 (763)
T ss_pred Hhcc
Confidence 7753
|
|
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=91.04 E-value=0.51 Score=50.04 Aligned_cols=87 Identities=10% Similarity=0.135 Sum_probs=54.0
Q ss_pred cEEEEEeCChhhHHHHHHHhh-CCCEEEE-ECCCCCCCC--ccccCCce-ecCCHHhhhc--CCcEEEEcccCChhhHhh
Q 007040 163 LVLGIVGRSASARALATRSLS-FKMSVLY-FDVPEGKGK--VTFPSAAR-RMDTLNDLLA--ASDVISLHCAVTDETIQI 235 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lka-fG~~V~~-~dr~~~~~~--~~~~~g~~-~~~sL~eLL~--~sDvVil~lPlT~~T~~l 235 (620)
.+|||||.|.||+..+..+.. -++++.+ +|+.+.... .+...|+. ...+.+++++ +.|+|+++.|.... .-
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H--~e 79 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAH--AR 79 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHH--HH
Confidence 369999999999988766664 4677664 566654321 12223443 3457888886 57889999996532 21
Q ss_pred cCHHHhhccCCCcEEEEcC
Q 007040 236 INAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 236 I~~~~L~~MK~gAiLINvg 254 (620)
+ ....++.|..+|+-.
T Consensus 80 ~---a~~al~aGk~VIdek 95 (285)
T TIGR03215 80 H---ARLLAELGKIVIDLT 95 (285)
T ss_pred H---HHHHHHcCCEEEECC
Confidence 1 233345566665543
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.96 E-value=0.43 Score=51.00 Aligned_cols=157 Identities=9% Similarity=0.075 Sum_probs=85.7
Q ss_pred CcEEEEEeCChhhHHHHHHHhh-CCCEEE-EECCCCCCC--CccccCCcee-cCCHHhhhc-----CCcEEEEcccCChh
Q 007040 162 GLVLGIVGRSASARALATRSLS-FKMSVL-YFDVPEGKG--KVTFPSAARR-MDTLNDLLA-----ASDVISLHCAVTDE 231 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lka-fG~~V~-~~dr~~~~~--~~~~~~g~~~-~~sL~eLL~-----~sDvVil~lPlT~~ 231 (620)
..++||||.|.||...+..+.. -++++. ++|+++... ..+...|+.. ..+++++++ +.|+|+.+.|....
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H 83 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAH 83 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHH
Confidence 3579999999999997766664 466665 456655321 1122234443 467899985 58899999985422
Q ss_pred hHhhcCHHHhhccCCCcEEEEcC---CChh----hcHHHHHHHHHcCCcceeEeecCCCCCC-CCcccc--CCCcEEE--
Q 007040 232 TIQIINAECLQHIKPGAFLVNTG---SSQL----LDDCAVKQLLIDGTLAGCALDGAEGPQW-MEAWVR--EMPNVLI-- 299 (620)
Q Consensus 232 T~~lI~~~~L~~MK~gAiLINvg---RG~v----VDe~AL~~AL~~G~I~GAaLDV~E~P~~-~~spL~--~~pNVIl-- 299 (620)
.- -.....+.|..+|+-. +|++ |+.+++.++ .+-++..+.--.+- |.. .=+|+- ..-.|+-
T Consensus 84 --~e---~a~~a~eaGk~VID~sPA~~~PlvVP~VN~~~~~~~-~~~~iia~p~~ati-~~v~Al~~v~~~~~~eIvat~ 156 (302)
T PRK08300 84 --VR---HAAKLREAGIRAIDLTPAAIGPYCVPAVNLDEHLDA-PNVNMVTCGGQATI-PIVAAVSRVAPVHYAEIVASI 156 (302)
T ss_pred --HH---HHHHHHHcCCeEEECCccccCCcccCcCCHHHHhcc-cCCCEEECccHHHH-HHHHHhcccCcCceeeeeeee
Confidence 11 1233456788888876 4555 444444222 11122211111000 100 000111 2334442
Q ss_pred cCC-CCCCcHHHHHHHHHHHHHHHHHH
Q 007040 300 LPR-SADYSEEVWMEIRDKAISVLQTF 325 (620)
Q Consensus 300 TPH-iAg~T~ea~~~~~~~a~enL~~~ 325 (620)
.-- .+..|....+++.+....-|+.|
T Consensus 157 ~s~s~g~gtr~nidE~~~~t~~~~~~~ 183 (302)
T PRK08300 157 ASKSAGPGTRANIDEFTETTSRAIEKV 183 (302)
T ss_pred hhhccCCcccccHHHHHHHHHHHHHHh
Confidence 112 25566888888888888888885
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.87 E-value=0.44 Score=48.33 Aligned_cols=38 Identities=18% Similarity=0.154 Sum_probs=34.0
Q ss_pred eecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
.+.|+++.|.|. |.||+++|+.|...|++|++.+++..
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~ 41 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDAD 41 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 468899999985 99999999999999999999998753
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=90.87 E-value=1.5 Score=49.28 Aligned_cols=101 Identities=11% Similarity=0.025 Sum_probs=63.5
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhC-------CC--EEEEECCCCCCCC--------c--cccCCceecCCHHhhhcCCcEE
Q 007040 163 LVLGIVGR-SASARALATRSLSF-------KM--SVLYFDVPEGKGK--------V--TFPSAARRMDTLNDLLAASDVI 222 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~Lkaf-------G~--~V~~~dr~~~~~~--------~--~~~~g~~~~~sL~eLL~~sDvV 222 (620)
.+|+|||. |.+|..+|-.|... |. +++.+|.+..... . .+...+....+-.+.+++||+|
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDiV 180 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEWA 180 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCEE
Confidence 46999999 99999999998765 44 7899998765433 0 0111222123445788999999
Q ss_pred EEcccCC--h-hh--------HhhcC--HHHhhc-cCCCcEEEEcCCChhhcHHHHH
Q 007040 223 SLHCAVT--D-ET--------IQIIN--AECLQH-IKPGAFLVNTGSSQLLDDCAVK 265 (620)
Q Consensus 223 il~lPlT--~-~T--------~~lI~--~~~L~~-MK~gAiLINvgRG~vVDe~AL~ 265 (620)
++..-.. + .+ ..++. ...+.. -.|++++|.++ ..+|.-+.+
T Consensus 181 VitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t~v 235 (444)
T PLN00112 181 LLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNALI 235 (444)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHHHH
Confidence 9987542 1 11 12221 123444 47899999887 344544433
|
|
| >TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.82 E-value=0.4 Score=51.68 Aligned_cols=30 Identities=13% Similarity=0.118 Sum_probs=24.9
Q ss_pred EEEEEeCChhhHHHHHHHhhCC----CEEEEECC
Q 007040 164 VLGIVGRSASARALATRSLSFK----MSVLYFDV 193 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG----~~V~~~dr 193 (620)
+|||+|+|+||+.+.+.|...+ ++|...+.
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd 34 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNE 34 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence 4899999999999999988653 78777754
|
Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species. |
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.74 E-value=0.78 Score=50.55 Aligned_cols=65 Identities=17% Similarity=0.136 Sum_probs=53.6
Q ss_pred ecCcEEEEEeCC----------hhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEccc
Q 007040 160 CRGLVLGIVGRS----------ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 160 L~GktVGIIGlG----------~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lP 227 (620)
..|++|+|+|+. .-+..+++.|...|.+|.+|||...... ..+....+++.+++..||+|++..-
T Consensus 294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (388)
T PRK15057 294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDS---FFNSRLERDLATFKQQADVIISNRM 368 (388)
T ss_pred hcCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCCCchh---hcCCeeeCCHHHHHHhCCEEEEcCC
Confidence 478999999993 5677999999999999999999854332 2367778999999999999998664
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=90.73 E-value=0.38 Score=49.67 Aligned_cols=65 Identities=14% Similarity=0.055 Sum_probs=45.5
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCc-------eecCCHHhhhcCCcEEEEccc
Q 007040 163 LVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA-------RRMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~-------~~~~sL~eLL~~sDvVil~lP 227 (620)
+++.|+| .|.||+.+++.|...|++|++++++..........++ ...+.+.+++..+|+|+.+.+
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence 3688998 5999999999999999999999987643221111111 112346677888998887764
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=90.73 E-value=1.8 Score=46.02 Aligned_cols=107 Identities=13% Similarity=0.054 Sum_probs=71.1
Q ss_pred CcEEEEEeC-ChhhHHHHHHHhhCCCE-EEEECCCCCCCCccccCCceecCCHHhhhcC--CcEEEEcccCChhhHhhcC
Q 007040 162 GLVLGIVGR-SASARALATRSLSFKMS-VLYFDVPEGKGKVTFPSAARRMDTLNDLLAA--SDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 162 GktVGIIGl-G~IG~~vA~~LkafG~~-V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~--sDvVil~lPlT~~T~~lI~ 237 (620)
..+|.|+|. |.+|..+.+.|..+|++ |+.++|..... .-.|...+.++.++-.. .|++++++|.. .+...+.
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~~---~v~G~~~y~sv~dlp~~~~~DlAvi~vp~~-~v~~~l~ 83 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGT---TVLGLPVFNTVAEAVEATGANASVIYVPPP-FAADAIL 83 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCCC---eEeCeeccCCHHHHhhccCCCEEEEEcCHH-HHHHHHH
Confidence 456888887 77999999999999885 44567652011 12456667899999887 89999999943 3334432
Q ss_pred HHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
+..+.=-+.++++..|-+ +-++..|.+..+++.+.
T Consensus 84 -e~~~~gvk~avI~s~Gf~-~~~~~~l~~~a~~~gir 118 (291)
T PRK05678 84 -EAIDAGIDLIVCITEGIP-VLDMLEVKAYLERKKTR 118 (291)
T ss_pred -HHHHCCCCEEEEECCCCC-HHHHHHHHHHHHHcCCE
Confidence 233322335556555543 45556888888887665
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.72 E-value=0.82 Score=49.15 Aligned_cols=77 Identities=16% Similarity=0.125 Sum_probs=51.9
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCC-EEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHH
Q 007040 163 LVLGIVG-RSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~ 240 (620)
.+|+||| .|-.|+++.+.|..... ++.....+.... . ...+++++++|+||+++|.... ..+
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~~---~-------~~~~~~~~~~DvvFlalp~~~s-~~~----- 66 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKD---A-------AARRELLNAADVAILCLPDDAA-REA----- 66 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCCc---c-------cCchhhhcCCCEEEECCCHHHH-HHH-----
Confidence 4699999 89999999999987653 665554332211 0 2345667889999999995522 222
Q ss_pred hhc-cCCCcEEEEcCC
Q 007040 241 LQH-IKPGAFLVNTGS 255 (620)
Q Consensus 241 L~~-MK~gAiLINvgR 255 (620)
... .+.|+.+||.+.
T Consensus 67 ~~~~~~~g~~VIDlSa 82 (313)
T PRK11863 67 VALIDNPATRVIDAST 82 (313)
T ss_pred HHHHHhCCCEEEECCh
Confidence 222 246899999874
|
|
| >PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function | Back alignment and domain information |
|---|
Probab=90.70 E-value=0.7 Score=44.19 Aligned_cols=85 Identities=16% Similarity=0.212 Sum_probs=56.4
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC--
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN-- 237 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~-- 237 (620)
..|++|++||+= +++++.|+..+.+|+++|+++...... .+.......++++++||+|++.-. -++|
T Consensus 9 ~~~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~~~~--~~~~~~~~~~~~l~~aD~viiTGs------TlvN~T 77 (147)
T PF04016_consen 9 GPGDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNIGEE--PGDVPDEDAEEILPWADVVIITGS------TLVNGT 77 (147)
T ss_dssp TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SS--CT-EEGGGHHHHGGG-SEEEEECH------HCCTTT
T ss_pred cCCCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCCCCC--CCcCCHHHHHHHHccCCEEEEEee------eeecCC
Confidence 478999999961 247888888899999999988443211 111234567899999999997643 1333
Q ss_pred -HHHhhccCCCcEEEEcCC
Q 007040 238 -AECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 238 -~~~L~~MK~gAiLINvgR 255 (620)
...|++.++++.+|=+|-
T Consensus 78 i~~iL~~~~~~~~vil~Gp 96 (147)
T PF04016_consen 78 IDDILELARNAREVILYGP 96 (147)
T ss_dssp HHHHHHHTTTSSEEEEESC
T ss_pred HHHHHHhCccCCeEEEEec
Confidence 346777777777777663
|
; PDB: 3L5O_B 3NPG_A. |
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.68 E-value=0.76 Score=49.47 Aligned_cols=89 Identities=13% Similarity=0.178 Sum_probs=53.6
Q ss_pred CcEEEEEe-CChhhHHHHHHHhhCCC---EEEEECCCCCCCCccccCCc-eecCCHH-hhhcCCcEEEEcccCChhhHhh
Q 007040 162 GLVLGIVG-RSASARALATRSLSFKM---SVLYFDVPEGKGKVTFPSAA-RRMDTLN-DLLAASDVISLHCAVTDETIQI 235 (620)
Q Consensus 162 GktVGIIG-lG~IG~~vA~~LkafG~---~V~~~dr~~~~~~~~~~~g~-~~~~sL~-eLL~~sDvVil~lPlT~~T~~l 235 (620)
+++|+||| .|.+|+.+.+.|...|+ ++.++.+.........-.+. ....+++ ..+..+|+|++++|.. .+..+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g-~s~~~ 79 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGS-VSKKY 79 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChH-HHHHH
Confidence 35799997 59999999999998665 44666544333221111111 1111222 3457899999999854 23333
Q ss_pred cCHHHhhccCCCcEEEEcCC
Q 007040 236 INAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 236 I~~~~L~~MK~gAiLINvgR 255 (620)
.. ..++.|+++|+.+.
T Consensus 80 ~~----~~~~~G~~VIDlS~ 95 (334)
T PRK14874 80 AP----KAAAAGAVVIDNSS 95 (334)
T ss_pred HH----HHHhCCCEEEECCc
Confidence 22 12356889998874
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=90.66 E-value=0.83 Score=51.05 Aligned_cols=68 Identities=22% Similarity=0.196 Sum_probs=45.4
Q ss_pred eecCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcc----cc-CCc--eecCCHHhhhcCCcEEEEcc
Q 007040 159 RCRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVT----FP-SAA--RRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 159 ~L~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~----~~-~g~--~~~~sL~eLL~~sDvVil~l 226 (620)
.-.+++|.|.| .|-||+.+++.|...|.+|+++|+........ +. ... ...+-++.++..+|+|+-+.
T Consensus 116 ~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~~~~~~~~~~~~~~i~~D~~~~~l~~~D~ViHlA 191 (442)
T PLN02206 116 KRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVMHHFSNPNFELIRHDVVEPILLEVDQIYHLA 191 (442)
T ss_pred ccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccchhhhhhhccCCceEEEECCccChhhcCCCEEEEee
Confidence 34779999998 69999999999999999999998643211100 00 011 12233455666789887655
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=90.64 E-value=0.26 Score=45.58 Aligned_cols=35 Identities=14% Similarity=0.106 Sum_probs=30.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~ 195 (620)
+.++|.|+|+|.+|..+|+.|...|+ ++..+|...
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 35789999999999999999999999 899999764
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.53 E-value=0.63 Score=53.31 Aligned_cols=133 Identities=16% Similarity=0.174 Sum_probs=87.0
Q ss_pred eecCcEEEEEeCChh-hHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSAS-ARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~I-G~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
.+.|++..+||-..| |..+|..|+....+|..+.... .+|.+.+.++|+|+.++--. +++-
T Consensus 159 ~v~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHSKT--------------~~lae~v~~ADIvIvAiG~P----efVK 220 (935)
T KOG4230|consen 159 FVAGKNAVVLGRSKIVGSPIAALLLWANATVTICHSKT--------------RNLAEKVSRADIVIVAIGQP----EFVK 220 (935)
T ss_pred ccccceeEEEecccccCChHHHHHHhcCceEEEecCCC--------------ccHHHHhccCCEEEEEcCCc----ceee
Confidence 478999999999875 9999999999999999886533 37889999999999998643 3443
Q ss_pred HHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEEEcCCCCCCcHHHHHHHHHH
Q 007040 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDK 317 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVIlTPHiAg~T~ea~~~~~~~ 317 (620)
. .++|||+++|++|---+-|... ++|.- +.=||--+... +. -=.|||-=+|.-+=+..-+.+.
T Consensus 221 g---dWiKpGavVIDvGINyvpD~~K-----ksg~k--lvGDVdfe~Ak------ev-as~ITPVPGGVGPMTVAMLmqN 283 (935)
T KOG4230|consen 221 G---DWIKPGAVVIDVGINYVPDPSK-----KSGFK--LVGDVDFESAK------EV-ASFITPVPGGVGPMTVAMLMQN 283 (935)
T ss_pred c---ccccCCcEEEEccccccCCCCC-----cccce--EeeecchHhhh------hh-hhccccCCCCcchHHHHHHHHH
Confidence 3 4689999999999755544322 22322 34466322110 00 1247887666655443334444
Q ss_pred HHHHHHHHH
Q 007040 318 AISVLQTFF 326 (620)
Q Consensus 318 a~enL~~~L 326 (620)
+++.-++++
T Consensus 284 tveaAKR~r 292 (935)
T KOG4230|consen 284 TVEAAKRQR 292 (935)
T ss_pred HHHHHHHHH
Confidence 444444444
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.44 E-value=0.81 Score=49.62 Aligned_cols=89 Identities=11% Similarity=0.200 Sum_probs=55.7
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhh--C-CCEEEEECCCCCCCCccccCC-ceecCCHHhh-hcCCcEEEEcccCChhhHh
Q 007040 161 RGLVLGIVGR-SASARALATRSLS--F-KMSVLYFDVPEGKGKVTFPSA-ARRMDTLNDL-LAASDVISLHCAVTDETIQ 234 (620)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~Lka--f-G~~V~~~dr~~~~~~~~~~~g-~~~~~sL~eL-L~~sDvVil~lPlT~~T~~ 234 (620)
.+.+|+|||. |-+|+.+.+.|.. | ..++..+......+......+ .....++++. +.++|+|++++|.. .
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~~~~~~~~~~~Dvvf~a~p~~-~--- 78 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQDAAEFDWSQAQLAFFVAGRE-A--- 78 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEEeCchhhccCCCEEEECCCHH-H---
Confidence 4678999997 9999999999987 4 346666654433333111111 1122245554 37899999999954 2
Q ss_pred hcCHHHhhc-cCCCcEEEEcCC
Q 007040 235 IINAECLQH-IKPGAFLVNTGS 255 (620)
Q Consensus 235 lI~~~~L~~-MK~gAiLINvgR 255 (620)
..+.... .+.|+.+|+.+.
T Consensus 79 --s~~~~~~~~~~g~~VIDlS~ 98 (336)
T PRK08040 79 --SAAYAEEATNAGCLVIDSSG 98 (336)
T ss_pred --HHHHHHHHHHCCCEEEECCh
Confidence 2222222 256999999883
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.38 E-value=0.62 Score=48.47 Aligned_cols=38 Identities=24% Similarity=0.178 Sum_probs=33.8
Q ss_pred eeecCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 158 RRCRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 158 ~~L~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
..+.|+++.|.| .|.||..+|+.|.+.|++|+.+++..
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~ 80 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDE 80 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 467899999998 48899999999999999999998765
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=90.19 E-value=1 Score=48.91 Aligned_cols=89 Identities=16% Similarity=0.197 Sum_probs=52.6
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCC---EEEEECCCCCCCCccccCCc-eecCCHH-hhhcCCcEEEEcccCChhhHh
Q 007040 161 RGLVLGIVG-RSASARALATRSLSFKM---SVLYFDVPEGKGKVTFPSAA-RRMDTLN-DLLAASDVISLHCAVTDETIQ 234 (620)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafG~---~V~~~dr~~~~~~~~~~~g~-~~~~sL~-eLL~~sDvVil~lPlT~~T~~ 234 (620)
...+|+||| .|.+|+.+.+.|...++ ++.++......+......+. ....+++ +.+..+|+|++++|.. ....
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~-~s~~ 84 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGS-ISKK 84 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcH-HHHH
Confidence 456899997 58999999999987554 44444332222221111111 1112222 4458899999999965 2333
Q ss_pred hcCHHHhhccCCCcEEEEcC
Q 007040 235 IINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 235 lI~~~~L~~MK~gAiLINvg 254 (620)
+.. + ..+.|+.+|+.+
T Consensus 85 ~~~-~---~~~~g~~VIDlS 100 (344)
T PLN02383 85 FGP-I---AVDKGAVVVDNS 100 (344)
T ss_pred HHH-H---HHhCCCEEEECC
Confidence 322 1 124699999988
|
|
| >PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=90.14 E-value=1.9 Score=40.75 Aligned_cols=98 Identities=14% Similarity=0.136 Sum_probs=68.7
Q ss_pred HHHHHHHhhCCCEEEEECCCCCCCC---cccc-CCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEE
Q 007040 175 RALATRSLSFKMSVLYFDVPEGKGK---VTFP-SAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFL 250 (620)
Q Consensus 175 ~~vA~~LkafG~~V~~~dr~~~~~~---~~~~-~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiL 250 (620)
=..++.|...|++|++=.-...... ..+. .|+....+-++++++||+|+-.=|.+ .+.++.|++|.++
T Consensus 17 P~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~--------~~e~~~l~~g~~l 88 (136)
T PF05222_consen 17 PEDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPS--------EEELALLKPGQTL 88 (136)
T ss_dssp HHHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEE
T ss_pred HHHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCC--------HHHHhhcCCCcEE
Confidence 4567788888999998765432211 2222 35566666779999999999887765 5578999999999
Q ss_pred EEcCCChhhcHHHHHHHHHcCCcceeEeecCC
Q 007040 251 VNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE 282 (620)
Q Consensus 251 INvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E 282 (620)
|-..... ....+++.|.+.++...++|-..
T Consensus 89 i~~~~~~--~~~~~~~~l~~~~it~~a~E~ip 118 (136)
T PF05222_consen 89 IGFLHPA--QNKELLEALAKKGITAFALELIP 118 (136)
T ss_dssp EEE--GG--GHHHHHHHHHHCTEEEEEGGGSB
T ss_pred EEeeccc--cCHHHHHHHHHCCCEEEEhhhCc
Confidence 9876654 58889999999999877777644
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A .... |
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=90.12 E-value=0.52 Score=39.57 Aligned_cols=35 Identities=11% Similarity=0.044 Sum_probs=31.5
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCC
Q 007040 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKG 198 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~ 198 (620)
++.|||-|.+|-.+|..|+.+|.+|..+.+...-.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 47899999999999999999999999999877543
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.05 E-value=0.35 Score=45.90 Aligned_cols=68 Identities=9% Similarity=0.003 Sum_probs=46.0
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCcee-----cCCHHhhhcCCcEEEEcccCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR-----MDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~-----~~sL~eLL~~sDvVil~lPlT 229 (620)
.++++.+||+| -|..+|..|...|++|++.|.++.........+... ...--++-..+|+|--.-|..
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~ 88 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPR 88 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCH
Confidence 56789999999 899999999999999999999875433111111110 111224566777776666633
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=89.98 E-value=0.44 Score=50.60 Aligned_cols=36 Identities=11% Similarity=0.255 Sum_probs=32.7
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
.|.+|.|+|.|.||..++..+++.|.+|++.+++..
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~ 201 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPE 201 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHH
Confidence 488999999999999999999999999999987653
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=89.91 E-value=0.26 Score=51.72 Aligned_cols=65 Identities=18% Similarity=0.133 Sum_probs=44.1
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCccccCCceecCCHH-hh-hcCCcEEEEcccCC
Q 007040 162 GLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARRMDTLN-DL-LAASDVISLHCAVT 229 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~~~g~~~~~sL~-eL-L~~sDvVil~lPlT 229 (620)
++++.|+|.|..|++++..|...|+ +|++++|+.......... .. .+.. ++ ...+|+||++.|..
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~-~~--~~~~~~~~~~~~dlvINaTp~G 189 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAEL-YG--YEWRPDLGGIEADILVNVTPIG 189 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-hC--CcchhhcccccCCEEEECCccc
Confidence 4589999999999999999999998 699999987443311100 00 0111 11 24578888888854
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=89.91 E-value=0.74 Score=49.77 Aligned_cols=87 Identities=11% Similarity=0.159 Sum_probs=52.0
Q ss_pred EEEEEe-CChhhHHHHHHHhhCCCE---EEEECCCCCCCCccccCCc-eecCCH-HhhhcCCcEEEEcccCChhhHhhcC
Q 007040 164 VLGIVG-RSASARALATRSLSFKMS---VLYFDVPEGKGKVTFPSAA-RRMDTL-NDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 164 tVGIIG-lG~IG~~vA~~LkafG~~---V~~~dr~~~~~~~~~~~g~-~~~~sL-~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
+|+||| .|.+|+.+++.|...++. +.++.+...........+. ....++ .+.+..+|+|++++|.. .+..+.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~-~s~~~a- 78 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGS-VSKEFA- 78 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHH-HHHHHH-
Confidence 489999 899999999999986664 3444444333221111111 111122 23457899999999955 222221
Q ss_pred HHHhhccCCCcEEEEcCC
Q 007040 238 AECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgR 255 (620)
.. ..+.|+++|+.+.
T Consensus 79 ~~---~~~~G~~VID~ss 93 (339)
T TIGR01296 79 PK---AAKCGAIVIDNTS 93 (339)
T ss_pred HH---HHHCCCEEEECCH
Confidence 11 2356888998874
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=89.88 E-value=1.1 Score=44.21 Aligned_cols=35 Identities=14% Similarity=0.133 Sum_probs=30.7
Q ss_pred eecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECC
Q 007040 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDV 193 (620)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr 193 (620)
.+.|+++.|.|. |.||+.+|+.|...|++|+...+
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~ 38 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYA 38 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecC
Confidence 367899999985 89999999999999999987754
|
|
| >PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=89.82 E-value=1.8 Score=48.02 Aligned_cols=111 Identities=14% Similarity=0.168 Sum_probs=66.9
Q ss_pred eecC-cEEEEEeCChhhHHHHHHHhhC--CCEEEEECCCCCCCC-ccccCCceec---CCHHhhhcCCcEEEEcc--cC-
Q 007040 159 RCRG-LVLGIVGRSASARALATRSLSF--KMSVLYFDVPEGKGK-VTFPSAARRM---DTLNDLLAASDVISLHC--AV- 228 (620)
Q Consensus 159 ~L~G-ktVGIIGlG~IG~~vA~~Lkaf--G~~V~~~dr~~~~~~-~~~~~g~~~~---~sL~eLL~~sDvVil~l--Pl- 228 (620)
++.+ ++|.|||+|.+|.+.++.|... |+.|.++|....... .....++... .+. +.+.++|+|+..- |.
T Consensus 3 ~~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~g~~~~~g~~~~-~~~~~~d~vV~SpgI~~~ 81 (438)
T PRK04663 3 RWQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPEDVELHSGGWNL-EWLLEADLVVTNPGIALA 81 (438)
T ss_pred cccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhcCCEEEeCCCCh-HHhccCCEEEECCCCCCC
Confidence 3566 7899999999999999999987 689999997543211 1122233321 122 3457899887754 32
Q ss_pred ChhhH-------hhcCH-HHhh-ccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 229 TDETI-------QIINA-ECLQ-HIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 229 T~~T~-------~lI~~-~~L~-~MK~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
.|+.. .++.. +++. .++...+-|--+-|+.--..-|...|+.
T Consensus 82 ~p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 132 (438)
T PRK04663 82 TPEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKA 132 (438)
T ss_pred CHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 22211 12322 3333 3443444455456888777777777764
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=89.80 E-value=1.4 Score=47.30 Aligned_cols=92 Identities=15% Similarity=0.260 Sum_probs=55.6
Q ss_pred cEEEEEeCChhhHHHHHHHhh--CCCEEEEECCCCCCCC---cccc-----C--CceecC-CHHhhhcCCcEEEEcc--c
Q 007040 163 LVLGIVGRSASARALATRSLS--FKMSVLYFDVPEGKGK---VTFP-----S--AARRMD-TLNDLLAASDVISLHC--A 227 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lka--fG~~V~~~dr~~~~~~---~~~~-----~--g~~~~~-sL~eLL~~sDvVil~l--P 227 (620)
++|+|||.|.||+.+|-.|.. ++-++..||....... .... . ...... .=.+.++.||+|+++. |
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG~p 80 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAGVP 80 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCCCC
Confidence 479999999999999999963 4558999998843222 0011 1 111111 1146778999999998 6
Q ss_pred CChh-hHh-hc--CH-------HHhhccCCCcEEEEcC
Q 007040 228 VTDE-TIQ-II--NA-------ECLQHIKPGAFLVNTG 254 (620)
Q Consensus 228 lT~~-T~~-lI--~~-------~~L~~MK~gAiLINvg 254 (620)
..|. ||. ++ |. ..+..-.|+++++.++
T Consensus 81 rKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvt 118 (313)
T COG0039 81 RKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVT 118 (313)
T ss_pred CCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEec
Confidence 5553 333 22 22 2233334567777654
|
|
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=89.79 E-value=0.42 Score=49.71 Aligned_cols=92 Identities=15% Similarity=0.022 Sum_probs=55.0
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCE-EEEECCCCCCCCccccCCce---ecC--CHH--h--hhcCCcEEEEcccCCh
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMS-VLYFDVPEGKGKVTFPSAAR---RMD--TLN--D--LLAASDVISLHCAVTD 230 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~-V~~~dr~~~~~~~~~~~g~~---~~~--sL~--e--LL~~sDvVil~lPlT~ 230 (620)
.|.+|.|+|.|.+|+.++..+++.|++ |++.+++..........+.. ... +.. . .....|+|+.+++..+
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~~~~~ 238 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEATGVPK 238 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECCCChH
Confidence 578899999999999999999999998 88887765322211001110 000 110 0 1134677776665221
Q ss_pred hhHhhcCHHHhhccCCCcEEEEcCCCh
Q 007040 231 ETIQIINAECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 231 ~T~~lI~~~~L~~MK~gAiLINvgRG~ 257 (620)
.....+..|+++..+|+++...
T Consensus 239 -----~~~~~~~~l~~~G~~v~~g~~~ 260 (334)
T cd08234 239 -----TLEQAIEYARRGGTVLVFGVYA 260 (334)
T ss_pred -----HHHHHHHHHhcCCEEEEEecCC
Confidence 1233456677777777776543
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.74 E-value=3.9 Score=43.13 Aligned_cols=91 Identities=14% Similarity=0.106 Sum_probs=71.3
Q ss_pred hHHHHHHHhhCCCEEEEECCCCCCCCcc-----ccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCc
Q 007040 174 ARALATRSLSFKMSVLYFDVPEGKGKVT-----FPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGA 248 (620)
Q Consensus 174 G~~vA~~LkafG~~V~~~dr~~~~~~~~-----~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gA 248 (620)
|..||-.+...|+.|+..+|+..-.... ...|+...++-.+..+.+.+.++..|-...|.++. .+.+.+++.||
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-rei~~hvpEgA 111 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-REILEHVPEGA 111 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHH-HHHHhhCcCCc
Confidence 6788888889999999999987443311 23466667777788899999999999998888876 56899999999
Q ss_pred EEEEcCCChhhcHHHHHHHH
Q 007040 249 FLVNTGSSQLLDDCAVKQLL 268 (620)
Q Consensus 249 iLINvgRG~vVDe~AL~~AL 268 (620)
++.|+...+.+ .|+..|
T Consensus 112 VicnTCT~sp~---vLy~~L 128 (340)
T COG4007 112 VICNTCTVSPV---VLYYSL 128 (340)
T ss_pred EecccccCchh---HHHHHh
Confidence 99999875543 344444
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=89.73 E-value=0.58 Score=49.77 Aligned_cols=71 Identities=11% Similarity=0.004 Sum_probs=47.9
Q ss_pred eeecCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCc---cc--cCCc-------eecCCHHhhhcCCcEEEE
Q 007040 158 RRCRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKV---TF--PSAA-------RRMDTLNDLLAASDVISL 224 (620)
Q Consensus 158 ~~L~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~---~~--~~g~-------~~~~sL~eLL~~sDvVil 224 (620)
++..+++|.|.| .|-||+.+++.|...|++|++.++....... .. ...+ .....+.+++...|+|+.
T Consensus 6 ~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 85 (353)
T PLN02896 6 RESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFH 85 (353)
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEE
Confidence 567899999998 6999999999999999999998776432110 00 0001 112235566777898776
Q ss_pred cccC
Q 007040 225 HCAV 228 (620)
Q Consensus 225 ~lPl 228 (620)
+...
T Consensus 86 ~A~~ 89 (353)
T PLN02896 86 VAAS 89 (353)
T ss_pred CCcc
Confidence 6543
|
|
| >PRK12861 malic enzyme; Reviewed | Back alignment and domain information |
|---|
Probab=89.73 E-value=1.3 Score=53.00 Aligned_cols=181 Identities=14% Similarity=0.151 Sum_probs=116.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhh
Q 007040 104 GLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLS 183 (620)
Q Consensus 104 GI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~Lka 183 (620)
.|++.|..-.. +|=-+++-+|+.+|-. .+.+...+|.|.|.|.-|..+|+.|..
T Consensus 157 ~ipvf~DD~qG---Ta~v~lA~llnal~~~-----------------------gk~l~d~~iv~~GAGaAg~~ia~~l~~ 210 (764)
T PRK12861 157 KIPVFHDDQHG---TAITVSAAFINGLKVV-----------------------GKSIKEVKVVTSGAGAAALACLDLLVD 210 (764)
T ss_pred CCCeeccccch---HHHHHHHHHHHHHHHh-----------------------CCChhHcEEEEECHhHHHHHHHHHHHH
Confidence 78998884433 3334566777776521 134788999999999999999999999
Q ss_pred CCC---EEEEECCCC-----CCC--C---ccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEE
Q 007040 184 FKM---SVLYFDVPE-----GKG--K---VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFL 250 (620)
Q Consensus 184 fG~---~V~~~dr~~-----~~~--~---~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiL 250 (620)
.|. +++.+|+.. ... . ..+... ....+|.|++..+|+++=. . +-++|+++.+..|.+..++
T Consensus 211 ~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~-~~~~~L~eai~~advliG~-S----~~g~ft~e~v~~Ma~~PII 284 (764)
T PRK12861 211 LGLPVENIWVTDIEGVVYRGRTTLMDPDKERFAQE-TDARTLAEVIGGADVFLGL-S----AGGVLKAEMLKAMAARPLI 284 (764)
T ss_pred cCCChhhEEEEcCCCeeeCCCcccCCHHHHHHHhh-cCCCCHHHHHhcCCEEEEc-C----CCCCCCHHHHHHhccCCEE
Confidence 999 799999764 110 0 011111 1235899999999987643 2 2489999999999999999
Q ss_pred EEcCCChhhcHHHHHHHHHcCC-cceeEeecCCCCCCCCccccCCCcEEEcCCCCCCc-----HHHHHHHHHHHHHHHHH
Q 007040 251 VNTGSSQLLDDCAVKQLLIDGT-LAGCALDGAEGPQWMEAWVREMPNVLILPRSADYS-----EEVWMEIRDKAISVLQT 324 (620)
Q Consensus 251 INvgRG~vVDe~AL~~AL~~G~-I~GAaLDV~E~P~~~~spL~~~pNVIlTPHiAg~T-----~ea~~~~~~~a~enL~~ 324 (620)
.=.+.....-..+.+.. ..|. |.+. -....++ +..|+++=|-++-.. ....++|.-.+++.|..
T Consensus 285 FaLsNPtpE~~pe~a~~-~~g~aivaT-----Grs~~pn----Q~NN~l~FPgi~~Gal~~~a~~I~~~M~~aAa~alA~ 354 (764)
T PRK12861 285 LALANPTPEIFPELAHA-TRDDVVIAT-----GRSDYPN----QVNNVLCFPYIFRGALDVGATTITREMEIAAVHAIAG 354 (764)
T ss_pred EECCCCCccCCHHHHHh-cCCCEEEEe-----CCcCCCC----ccceeeecchhhHHHHHcCCccCCHHHHHHHHHHHHh
Confidence 99998764211121122 2233 3211 1111111 567999999754322 22346777777777777
Q ss_pred HH
Q 007040 325 FF 326 (620)
Q Consensus 325 ~L 326 (620)
+.
T Consensus 355 ~~ 356 (764)
T PRK12861 355 LA 356 (764)
T ss_pred hC
Confidence 53
|
|
| >COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.72 E-value=1 Score=48.27 Aligned_cols=66 Identities=20% Similarity=0.225 Sum_probs=49.9
Q ss_pred eecCcEEEEEe---CChhhHHHHHHHhhCCCEEEEECCCCCCCC----ccccC---CceecCCHHhhhcCCcEEEE
Q 007040 159 RCRGLVLGIVG---RSASARALATRSLSFKMSVLYFDVPEGKGK----VTFPS---AARRMDTLNDLLAASDVISL 224 (620)
Q Consensus 159 ~L~GktVGIIG---lG~IG~~vA~~LkafG~~V~~~dr~~~~~~----~~~~~---g~~~~~sL~eLL~~sDvVil 224 (620)
++.|.+|+|+| +|+...+.+..|..||.+|..+.|..-... ..... .....+.+++.+.++||+.+
T Consensus 155 ~~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~p~~i~~~l~~~~~~~~~~~~~e~~i~~~DVl~~ 230 (316)
T COG0540 155 RLDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPEYILEELEEKGGVVVEHDSDEEVIEEADVLYM 230 (316)
T ss_pred CcCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHhCCchhHHHHHhhcCceEEEecchhhhhccCCEEEe
Confidence 37899999999 899999999999999999999998753331 11111 12334556669999999954
|
|
| >PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=89.71 E-value=1.1 Score=51.40 Aligned_cols=62 Identities=16% Similarity=0.204 Sum_probs=47.1
Q ss_pred ecCcEEEEEeC---ChhhHHHHHHHhhCC-CEEEEECCCCCCCCccc-----cCC--ceecCCHHhhhcCCcE
Q 007040 160 CRGLVLGIVGR---SASARALATRSLSFK-MSVLYFDVPEGKGKVTF-----PSA--ARRMDTLNDLLAASDV 221 (620)
Q Consensus 160 L~GktVGIIGl---G~IG~~vA~~LkafG-~~V~~~dr~~~~~~~~~-----~~g--~~~~~sL~eLL~~sDv 221 (620)
+.|.+|++||- +++..+++..|..|| ++|.+..|..-.....+ ..| +....++++.++.||+
T Consensus 172 l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav~~AD~ 244 (525)
T PRK13376 172 NSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYLSQKDV 244 (525)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhccCCc
Confidence 67999999998 588999999999998 99999998653211111 112 3456789999999995
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.70 E-value=0.59 Score=46.88 Aligned_cols=37 Identities=16% Similarity=0.026 Sum_probs=33.6
Q ss_pred eecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
.+.|+++.|.|. |.||..+|+.|...|++|++.+++.
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~ 44 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDP 44 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 468999999985 9999999999999999999999875
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=89.69 E-value=1.1 Score=49.95 Aligned_cols=94 Identities=14% Similarity=0.043 Sum_probs=61.9
Q ss_pred eecCcEEEEEeC----------ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHh-hhcCCcEEEEccc
Q 007040 159 RCRGLVLGIVGR----------SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLND-LLAASDVISLHCA 227 (620)
Q Consensus 159 ~L~GktVGIIGl----------G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~e-LL~~sDvVil~lP 227 (620)
.+.|++|+|+|+ ..-+..+++.|...|.+|.+|||...........+. ..+++ .+..||+|+++..
T Consensus 311 ~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~---~~~~~~~~~~ad~vvi~t~ 387 (425)
T PRK15182 311 NVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGI---IPVSEVKSSHYDAIIVAVG 387 (425)
T ss_pred CCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCc---ccchhhhhcCCCEEEEccC
Confidence 478999999998 567899999999999999999998432110000111 11222 3678999999998
Q ss_pred CChhhHhhcCHHHhh-ccCCCcEEEEcCCChh
Q 007040 228 VTDETIQIINAECLQ-HIKPGAFLVNTGSSQL 258 (620)
Q Consensus 228 lT~~T~~lI~~~~L~-~MK~gAiLINvgRG~v 258 (620)
..+ -+ -++-+.+. .|+...++|+ +|+-+
T Consensus 388 h~~-f~-~~~~~~~~~~~~~~~~iiD-~r~~~ 416 (425)
T PRK15182 388 HQQ-FK-QMGSEDIRGFGKDKHVLYD-LKYVL 416 (425)
T ss_pred CHH-hh-cCCHHHHHHhcCCCCEEEE-CCCCC
Confidence 653 22 24444444 4564568888 45544
|
|
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=89.61 E-value=0.82 Score=49.62 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=32.0
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
.|.+|.|.|.|.||..++..++++|++|++.++..
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~ 212 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSS 212 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCCh
Confidence 58899999999999999999999999999987654
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=89.59 E-value=1.1 Score=47.50 Aligned_cols=33 Identities=18% Similarity=-0.014 Sum_probs=29.0
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 163 LVLGIVG-RSASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
++|.|.| .|-||+.+++.|...|++|+++++..
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~ 34 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRS 34 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCC
Confidence 4677887 59999999999999999999998765
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2 | Back alignment and domain information |
|---|
Probab=89.56 E-value=0.72 Score=51.70 Aligned_cols=87 Identities=16% Similarity=0.146 Sum_probs=51.7
Q ss_pred EEEEEeCChhhHHHHHHHhhCCC------EEEEECCCCCCCC---cc--c---cCCce----ecCCHHhhhcCCcEEEEc
Q 007040 164 VLGIVGRSASARALATRSLSFKM------SVLYFDVPEGKGK---VT--F---PSAAR----RMDTLNDLLAASDVISLH 225 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG~------~V~~~dr~~~~~~---~~--~---~~g~~----~~~sL~eLL~~sDvVil~ 225 (620)
+|.|||.|.+|.++++.|...|. ++.++|...-... .. + ..|.. ....+.++-....+....
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~ 80 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ 80 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence 47899999999999999999988 8999997642211 00 0 00110 111233444455555555
Q ss_pred ccCChhhHhhcCHHHhhccCCCcEEEEc
Q 007040 226 CAVTDETIQIINAECLQHIKPGAFLVNT 253 (620)
Q Consensus 226 lPlT~~T~~lI~~~~L~~MK~gAiLINv 253 (620)
...+++|..+++.+.+... .++||+
T Consensus 81 ~~v~~~~~~~~~~~f~~~~---DvVi~a 105 (435)
T cd01490 81 NRVGPETEHIFNDEFWEKL---DGVANA 105 (435)
T ss_pred cccChhhhhhhhHHHhcCC---CEEEEC
Confidence 5555666666655555433 355554
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1. |
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=89.54 E-value=1.1 Score=48.35 Aligned_cols=85 Identities=13% Similarity=0.144 Sum_probs=50.6
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCC-CEEEEECCCC-CCCCcc---ccC-----------Cce-ecCCHHhhhcCCcEEEE
Q 007040 163 LVLGIVG-RSASARALATRSLSFK-MSVLYFDVPE-GKGKVT---FPS-----------AAR-RMDTLNDLLAASDVISL 224 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG-~~V~~~dr~~-~~~~~~---~~~-----------g~~-~~~sL~eLL~~sDvVil 224 (620)
.+|+|+| .|.||+.+++.|..+. +++.++..+. ...... .+. ... ...+.++ +.++|+|+.
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~DvVf~ 82 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEA-VDDVDIVFS 82 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHH-hcCCCEEEE
Confidence 5799998 9999999999998764 4888873222 121110 000 001 1123444 478999999
Q ss_pred cccCChhhHhhcCHHHhhcc-CCCcEEEEcC
Q 007040 225 HCAVTDETIQIINAECLQHI-KPGAFLVNTG 254 (620)
Q Consensus 225 ~lPlT~~T~~lI~~~~L~~M-K~gAiLINvg 254 (620)
++|.... ..++ ..+ +.|..+|+.+
T Consensus 83 a~p~~~s-~~~~-----~~~~~~G~~vIDls 107 (349)
T PRK08664 83 ALPSDVA-GEVE-----EEFAKAGKPVFSNA 107 (349)
T ss_pred eCChhHH-HHHH-----HHHHHCCCEEEECC
Confidence 9996522 2222 222 3567677665
|
|
| >TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 | Back alignment and domain information |
|---|
Probab=89.51 E-value=0.81 Score=49.27 Aligned_cols=62 Identities=13% Similarity=0.163 Sum_probs=42.5
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCce--ecCC---HHhhhc--CCcEEEEc
Q 007040 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR--RMDT---LNDLLA--ASDVISLH 225 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~--~~~s---L~eLL~--~sDvVil~ 225 (620)
+|||||-|..|..+++.++.+|++|+++|+++......+.+... ...+ +.+++. ++|+|+..
T Consensus 1 kililG~g~~~~~l~~aa~~~G~~v~~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~v~~~ 69 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVINMLDGDALRAVIEREKPDYIVPE 69 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhhhCceEEEcCCCCHHHHHHHHHHhCCCEEEec
Confidence 58999999999999999999999999999876433211221111 1123 444555 58887643
|
This enzyme is an alternative to PurN (TIGR00639) |
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=89.47 E-value=0.57 Score=51.27 Aligned_cols=38 Identities=8% Similarity=0.081 Sum_probs=33.5
Q ss_pred eecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
...|++|.|+|. |.||+.+++.|...|++|++++|+..
T Consensus 57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~ 95 (390)
T PLN02657 57 EPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKS 95 (390)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechh
Confidence 457889999985 99999999999999999999998753
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=89.46 E-value=0.6 Score=50.40 Aligned_cols=89 Identities=16% Similarity=0.190 Sum_probs=54.1
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcccc-CCceecCCH---------Hhhh--cCCcEEEEcccC
Q 007040 162 GLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFP-SAARRMDTL---------NDLL--AASDVISLHCAV 228 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~~-~g~~~~~sL---------~eLL--~~sDvVil~lPl 228 (620)
+.++.|+|.|.||...+..++.+|. +|++.|++....+.+.. .+.....+. .++. ..+|+++-|..
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G- 247 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG- 247 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-
Confidence 3399999999999999999999997 78888887755442222 122211111 1222 23777777776
Q ss_pred ChhhHhhcCHHHhhccCCCcEEEEcCC
Q 007040 229 TDETIQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 229 T~~T~~lI~~~~L~~MK~gAiLINvgR 255 (620)
++. .+ ...+...+++..++.+|-
T Consensus 248 ~~~---~~-~~ai~~~r~gG~v~~vGv 270 (350)
T COG1063 248 SPP---AL-DQALEALRPGGTVVVVGV 270 (350)
T ss_pred CHH---HH-HHHHHHhcCCCEEEEEec
Confidence 222 11 234556666666666653
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.43 E-value=0.71 Score=45.73 Aligned_cols=37 Identities=24% Similarity=0.181 Sum_probs=33.4
Q ss_pred ecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
+.++++.|+|. |.||..+++.|...|++|++++|+..
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~ 40 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEE 40 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 67889999985 89999999999999999999999863
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=89.30 E-value=1.3 Score=47.58 Aligned_cols=77 Identities=14% Similarity=0.136 Sum_probs=52.3
Q ss_pred EEEEEe-CChhhHHHHHHHhhC-CCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHh
Q 007040 164 VLGIVG-RSASARALATRSLSF-KMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECL 241 (620)
Q Consensus 164 tVGIIG-lG~IG~~vA~~Lkaf-G~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L 241 (620)
+|+|+| .|-+|.++.++|... .+++........ +. ..+.++++.++|+|++++|.. ....+.. ..
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~-----~~-----~~~~~~~~~~~D~vFlalp~~-~s~~~~~-~~- 69 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR-----KD-----AAERAKLLNAADVAILCLPDD-AAREAVS-LV- 69 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc-----cC-----cCCHhHhhcCCCEEEECCCHH-HHHHHHH-HH-
Confidence 689997 588999999999976 456666643321 10 124567888999999999955 2333321 11
Q ss_pred hccCCCcEEEEcCC
Q 007040 242 QHIKPGAFLVNTGS 255 (620)
Q Consensus 242 ~~MK~gAiLINvgR 255 (620)
...|+.+||.+-
T Consensus 70 --~~~g~~VIDlSa 81 (310)
T TIGR01851 70 --DNPNTCIIDAST 81 (310)
T ss_pred --HhCCCEEEECCh
Confidence 246889999873
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=89.30 E-value=0.53 Score=48.95 Aligned_cols=90 Identities=12% Similarity=0.124 Sum_probs=56.1
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCcee---cC--C-HHhhhcCCcEEEEcccCChhhHh
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR---MD--T-LNDLLAASDVISLHCAVTDETIQ 234 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~---~~--s-L~eLL~~sDvVil~lPlT~~T~~ 234 (620)
.|.+|.|+|.|.+|+.+++.++++|++|++.+++..........+... .. . ........|+|+.++....
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~---- 237 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSGA---- 237 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcHH----
Confidence 578899999999999999999999999999987764322111111100 00 0 0011134677776654321
Q ss_pred hcCHHHhhccCCCcEEEEcCC
Q 007040 235 IINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 235 lI~~~~L~~MK~gAiLINvgR 255 (620)
.....+..|+++..+|+++.
T Consensus 238 -~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 238 -AAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred -HHHHHHHhcccCCEEEEECC
Confidence 12445677888888888763
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=89.24 E-value=0.65 Score=49.50 Aligned_cols=37 Identities=16% Similarity=0.010 Sum_probs=32.9
Q ss_pred eecCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 159 RCRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 159 ~L~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
.+++++|.|.| .|-||..+++.|...|.+|+++|+..
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~ 49 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFS 49 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 36789999998 59999999999999999999999754
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.21 E-value=1.5 Score=43.43 Aligned_cols=35 Identities=17% Similarity=0.030 Sum_probs=30.7
Q ss_pred ecCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCC
Q 007040 160 CRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVP 194 (620)
Q Consensus 160 L~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~ 194 (620)
+.++++.|.| .|.||+.+|+.|...|++|+...++
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~ 38 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAG 38 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC
Confidence 5788999998 5999999999999999999877654
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=89.15 E-value=0.65 Score=46.97 Aligned_cols=70 Identities=14% Similarity=0.176 Sum_probs=46.6
Q ss_pred eecCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc--CCce----e----cCCHHhhh-cCCcEEEEcc
Q 007040 159 RCRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFP--SAAR----R----MDTLNDLL-AASDVISLHC 226 (620)
Q Consensus 159 ~L~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~--~g~~----~----~~sL~eLL-~~sDvVil~l 226 (620)
...+++|.|+| .|.||+.+++.|...|++|+++.|+......... .++. . ...+.+.+ ...|+|+++.
T Consensus 14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~ 93 (251)
T PLN00141 14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICAT 93 (251)
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEECC
Confidence 45788999999 5999999999999999999998876532111010 0111 0 11233445 5789999776
Q ss_pred cC
Q 007040 227 AV 228 (620)
Q Consensus 227 Pl 228 (620)
+.
T Consensus 94 g~ 95 (251)
T PLN00141 94 GF 95 (251)
T ss_pred CC
Confidence 54
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.05 E-value=0.48 Score=46.93 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=33.4
Q ss_pred ecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
+.|+++.|+|. |.||..+|+.|...|++|+.++++.
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~ 39 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQ 39 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 67899999997 9999999999999999999999875
|
|
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=89.00 E-value=0.66 Score=46.96 Aligned_cols=91 Identities=14% Similarity=0.068 Sum_probs=56.2
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCE-EEEECCCCCCCCccccCC-ceecCC-HHhh--hcCCcEEEEcccCChhhHhh
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMS-VLYFDVPEGKGKVTFPSA-ARRMDT-LNDL--LAASDVISLHCAVTDETIQI 235 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~-V~~~dr~~~~~~~~~~~g-~~~~~s-L~eL--L~~sDvVil~lPlT~~T~~l 235 (620)
.|.++.|.|.|.+|..++..++++|.+ |++.++...........+ ...... .+.. -...|+|+.++.... .
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~~~----~ 172 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASGSPS----A 172 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccCChH----H
Confidence 578899999999999999999999999 999887643322111111 000000 1111 124677776655332 1
Q ss_pred cCHHHhhccCCCcEEEEcCCC
Q 007040 236 INAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 236 I~~~~L~~MK~gAiLINvgRG 256 (620)
-...+..|+++..++++|-.
T Consensus 173 -~~~~~~~l~~~g~~~~~g~~ 192 (277)
T cd08255 173 -LETALRLLRDRGRVVLVGWY 192 (277)
T ss_pred -HHHHHHHhcCCcEEEEEecc
Confidence 13456778888888887643
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=88.82 E-value=0.68 Score=49.96 Aligned_cols=69 Identities=17% Similarity=0.207 Sum_probs=47.1
Q ss_pred eeecCcEEEEEe-CChhhHHHHHHHhhC-CCEEEEECCCCCCCCccc-------cCCc-------eecCCHHhhhcCCcE
Q 007040 158 RRCRGLVLGIVG-RSASARALATRSLSF-KMSVLYFDVPEGKGKVTF-------PSAA-------RRMDTLNDLLAASDV 221 (620)
Q Consensus 158 ~~L~GktVGIIG-lG~IG~~vA~~Lkaf-G~~V~~~dr~~~~~~~~~-------~~g~-------~~~~sL~eLL~~sDv 221 (620)
+.+..++|.|.| .|-||+.+++.|... |++|+++++......... ...+ .....+.+++..+|+
T Consensus 10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ 89 (386)
T PLN02427 10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADL 89 (386)
T ss_pred CcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCE
Confidence 456778999998 699999999999987 599999997642211000 0011 112345677888998
Q ss_pred EEEcc
Q 007040 222 ISLHC 226 (620)
Q Consensus 222 Vil~l 226 (620)
|+-+.
T Consensus 90 ViHlA 94 (386)
T PLN02427 90 TINLA 94 (386)
T ss_pred EEEcc
Confidence 87655
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=88.81 E-value=0.28 Score=48.83 Aligned_cols=77 Identities=16% Similarity=0.113 Sum_probs=52.9
Q ss_pred EEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCC--ccccCCc-------eecCCHHhhhcCCcEEEEcccCC-h---
Q 007040 165 LGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGK--VTFPSAA-------RRMDTLNDLLAASDVISLHCAVT-D--- 230 (620)
Q Consensus 165 VGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~--~~~~~g~-------~~~~sL~eLL~~sDvVil~lPlT-~--- 230 (620)
|.|+|. |.+|+.+++.|..-+++|.+.-|...... .....|+ ...++|.++++.+|+|++++|.. +
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~ 80 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPSHPSEL 80 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHH
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcchhhhh
Confidence 678885 99999999999999999999988763211 0011122 12346778899999999999954 1
Q ss_pred -hhHhhcCHHHh
Q 007040 231 -ETIQIINAECL 241 (620)
Q Consensus 231 -~T~~lI~~~~L 241 (620)
....++++..=
T Consensus 81 ~~~~~li~Aa~~ 92 (233)
T PF05368_consen 81 EQQKNLIDAAKA 92 (233)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhhhHHHhhhc
Confidence 24445555443
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.72 E-value=1.1 Score=45.30 Aligned_cols=37 Identities=11% Similarity=0.100 Sum_probs=32.4
Q ss_pred eeecCcEEEEEeCC---hhhHHHHHHHhhCCCEEEEECCC
Q 007040 158 RRCRGLVLGIVGRS---ASARALATRSLSFKMSVLYFDVP 194 (620)
Q Consensus 158 ~~L~GktVGIIGlG---~IG~~vA~~LkafG~~V~~~dr~ 194 (620)
..+.|+++.|.|.+ .||+.+|+.|.+.|++|+..++.
T Consensus 2 ~~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~ 41 (256)
T PRK12859 2 NQLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWT 41 (256)
T ss_pred CCcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecc
Confidence 35889999999985 79999999999999999987643
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=88.72 E-value=1.2 Score=47.49 Aligned_cols=88 Identities=15% Similarity=0.120 Sum_probs=52.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhh-CC-CEEEEECCCCCCCCccccCCceecCCHHhhhc--CCcEEEEcccC--ChhhHh
Q 007040 161 RGLVLGIVGRSASARALATRSLS-FK-MSVLYFDVPEGKGKVTFPSAARRMDTLNDLLA--ASDVISLHCAV--TDETIQ 234 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lka-fG-~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~--~sDvVil~lPl--T~~T~~ 234 (620)
.|.+|.|+|.|.||..++..++. +| .+|++++++....+.....+... .++++.. ..|+|+-++.. ++.
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~--~~~~~~~~~g~d~viD~~G~~~~~~--- 237 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETY--LIDDIPEDLAVDHAFECVGGRGSQS--- 237 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCcee--ehhhhhhccCCcEEEECCCCCccHH---
Confidence 58899999999999999988885 54 68999998764433211111111 1122212 25777766653 111
Q ss_pred hcCHHHhhccCCCcEEEEcC
Q 007040 235 IINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 235 lI~~~~L~~MK~gAiLINvg 254 (620)
.+ ...+..++++..+|.+|
T Consensus 238 ~~-~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 238 AI-NQIIDYIRPQGTIGLMG 256 (341)
T ss_pred HH-HHHHHhCcCCcEEEEEe
Confidence 12 23466677777777664
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=88.71 E-value=1 Score=45.73 Aligned_cols=63 Identities=17% Similarity=0.038 Sum_probs=43.2
Q ss_pred EEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCcee--cCCHHhhhcCCcEEEEcccC
Q 007040 166 GIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR--MDTLNDLLAASDVISLHCAV 228 (620)
Q Consensus 166 GIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~--~~sL~eLL~~sDvVil~lPl 228 (620)
.|.| .|-||+.+++.|..-|++|++++|+.............. ...+.+.+..+|+|+.+...
T Consensus 2 lVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvh~a~~ 67 (292)
T TIGR01777 2 LITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEALEGADAVINLAGE 67 (292)
T ss_pred EEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhcCCCCEEEECCCC
Confidence 4565 699999999999999999999999875433211111111 13445667889998877753
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=88.71 E-value=0.55 Score=49.09 Aligned_cols=59 Identities=22% Similarity=0.134 Sum_probs=40.3
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcC--CcEEEEcccCC
Q 007040 163 LVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAA--SDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~--sDvVil~lPlT 229 (620)
|+|.|+| -|-+|+.+++.|...|++|+++++..-.. ...+.+.+++.+ .|+|+.|...+
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl--------~d~~~~~~~~~~~~pd~Vin~aa~~ 62 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLDL--------TDPEAVAKLLEAFKPDVVINCAAYT 62 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-T--------TSHHHHHHHHHHH--SEEEE-----
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCC--------CCHHHHHHHHHHhCCCeEeccceee
Confidence 5799999 69999999999999999999998763221 112345566554 79999987654
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.58 E-value=1.6 Score=47.65 Aligned_cols=88 Identities=17% Similarity=0.306 Sum_probs=53.3
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhh-CCCE---EEEECCCCCCCCcc-cc-CCce-ecCCHHhhhcCCcEEEEcccCChhh
Q 007040 161 RGLVLGIVGR-SASARALATRSLS-FKMS---VLYFDVPEGKGKVT-FP-SAAR-RMDTLNDLLAASDVISLHCAVTDET 232 (620)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~Lka-fG~~---V~~~dr~~~~~~~~-~~-~g~~-~~~sL~eLL~~sDvVil~lPlT~~T 232 (620)
++.+|||||. |..|+.+.+.|.. -.+. +..+......+... +. .... ...+.++ +.++|+|++++|.. ..
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~-~~~~Divf~a~~~~-~s 81 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINS-FEGVDIAFFSAGGE-VS 81 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHH-hcCCCEEEECCChH-HH
Confidence 4568999997 9999999999984 5665 54454333222211 11 1111 1123333 47899999999854 22
Q ss_pred HhhcCHHHhhccCCCcEEEEcC
Q 007040 233 IQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 233 ~~lI~~~~L~~MK~gAiLINvg 254 (620)
..+.. . ..+.|+.+|+.+
T Consensus 82 ~~~~~-~---~~~~G~~VID~S 99 (347)
T PRK06728 82 RQFVN-Q---AVSSGAIVIDNT 99 (347)
T ss_pred HHHHH-H---HHHCCCEEEECc
Confidence 22322 1 235689999987
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=88.56 E-value=0.65 Score=48.53 Aligned_cols=36 Identities=8% Similarity=-0.059 Sum_probs=31.7
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 161 RGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
.|.+|.|.| .|.+|..+++.++.+|++|++.+++..
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~ 174 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDE 174 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 578899999 599999999999999999998887653
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.45 E-value=0.72 Score=48.84 Aligned_cols=59 Identities=19% Similarity=0.132 Sum_probs=46.6
Q ss_pred eCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhc-CCcEEEEccc
Q 007040 169 GRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLA-ASDVISLHCA 227 (620)
Q Consensus 169 GlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~-~sDvVil~lP 227 (620)
|.|-||+++..+|...|++|++..|++..........+...+.+.+... .+|+||+.+-
T Consensus 6 gTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~~v~~~~~~~~~~~~~~DavINLAG 65 (297)
T COG1090 6 GTGLIGRALTARLRKGGHQVTILTRRPPKASQNLHPNVTLWEGLADALTLGIDAVINLAG 65 (297)
T ss_pred cccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcCccccccchhhhcccCCCCEEEECCC
Confidence 7899999999999999999999999986655444434444566777776 6999998764
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.40 E-value=0.68 Score=46.42 Aligned_cols=37 Identities=16% Similarity=0.141 Sum_probs=32.9
Q ss_pred eecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
++.|+++.|.|. |.||+++|+.|...|++|+..+++.
T Consensus 3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~ 40 (252)
T PRK07856 3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRA 40 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCh
Confidence 367999999985 7899999999999999999999875
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.31 E-value=0.85 Score=45.22 Aligned_cols=37 Identities=22% Similarity=0.069 Sum_probs=32.8
Q ss_pred eecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
.+.|+++.|.|. |.||+.+|+.|...|++|++.+++.
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~ 40 (249)
T PRK06500 3 RLQGKTALITGGTSGIGLETARQFLAEGARVAITGRDP 40 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCH
Confidence 357889999985 9999999999999999999998864
|
|
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.25 E-value=0.76 Score=56.01 Aligned_cols=38 Identities=13% Similarity=0.008 Sum_probs=33.3
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCC
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVP 194 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~ 194 (620)
...|+..+|+|||+|.+|..+|..|...|. ++..+|..
T Consensus 327 Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D 365 (989)
T PRK14852 327 QRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFD 365 (989)
T ss_pred HHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 357999999999999999999999999998 67777754
|
|
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=88.13 E-value=0.37 Score=51.76 Aligned_cols=53 Identities=13% Similarity=0.080 Sum_probs=41.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCccccCCceecCCHH
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARRMDTLN 213 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~~~g~~~~~sL~ 213 (620)
.|.+++|+|+|.+|.+++.-++++|. +|+++|.++..-+.+...|+...-+..
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~ 245 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPK 245 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChh
Confidence 68999999999999999999999999 899999988655544444444333333
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=88.12 E-value=0.84 Score=48.47 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=32.7
Q ss_pred ecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
+.|++|.|.|. |-||..+++.|...|++|+++++...
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 39 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPP 39 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCc
Confidence 36789999984 99999999999999999999997654
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.12 E-value=0.92 Score=45.56 Aligned_cols=67 Identities=13% Similarity=0.101 Sum_probs=49.3
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-----cCCceecCCHHhhhcCCcEEEEcccCC
Q 007040 163 LVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTF-----PSAARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~-----~~g~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
++|+|||. |.+|..+++-+..-|++|+++-|++....... ...+.....+.+.+..-|+||...-..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence 57999985 99999999999999999999999875543211 111222344557788899999877544
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=88.11 E-value=1.1 Score=46.81 Aligned_cols=67 Identities=12% Similarity=0.034 Sum_probs=45.9
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcc---------------ccCCceecCCHHhhhcCCcEEEE
Q 007040 161 RGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVT---------------FPSAARRMDTLNDLLAASDVISL 224 (620)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~---------------~~~g~~~~~sL~eLL~~sDvVil 224 (620)
.|+++.|.| .|-||+.+++.|...|++|++..+........ ..........+.+++...|+|+.
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih 83 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH 83 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence 478899998 59999999999999999998876654321100 00011123346677888898887
Q ss_pred ccc
Q 007040 225 HCA 227 (620)
Q Consensus 225 ~lP 227 (620)
+..
T Consensus 84 ~A~ 86 (325)
T PLN02989 84 TAS 86 (325)
T ss_pred eCC
Confidence 764
|
|
| >PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=88.11 E-value=3.2 Score=45.86 Aligned_cols=104 Identities=13% Similarity=0.080 Sum_probs=63.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhh--cCCcEEEEc--ccCC-hh---hHh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLL--AASDVISLH--CAVT-DE---TIQ 234 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL--~~sDvVil~--lPlT-~~---T~~ 234 (620)
++|.|+|+|..|.++|+.|+ .|+.|.++|....... ....++... + ++.+ .++|+|+.. +|.+ |+ .+.
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~gi~~~-~-~~~~~~~~~d~vv~sp~i~~~~~~~~~a~~ 76 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEEGNLLL-P-SNDFDPNKSDLEIPSPGIPPSHPLIQKAKN 76 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhcCCEEe-c-HHHcCcCCCCEEEECCCCCCCCHHHHHHHH
Confidence 35899999999999999999 9999999995532211 111133222 2 2233 468988765 3322 22 122
Q ss_pred hcCHH-HhhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 235 IINAE-CLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 235 lI~~~-~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
++..- .+..+.+..+-|--+-|+.--..-+...|..
T Consensus 77 i~~~~e~~~~~~~~~i~ITGT~GKTTTt~ml~~iL~~ 113 (401)
T PRK03815 77 LISEYDYFYDVMPFSIWISGTNGKTTTTQMTTHLLED 113 (401)
T ss_pred HhhHHHHHHHhcCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 33332 3333223355565567888887778888875
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.10 E-value=2.1 Score=51.89 Aligned_cols=95 Identities=19% Similarity=0.218 Sum_probs=58.4
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCc----cccCCceecCCHHhhhcCCcEEEEcccCChhh--Hhh
Q 007040 163 LVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKV----TFPSAARRMDTLNDLLAASDVISLHCAVTDET--IQI 235 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~----~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T--~~l 235 (620)
++|.|.| .|.||+.+++.|.+.|++|++++++...... ...........+.+++..+|+|+.+....... .++
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~~~~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~~~~~~vNv 80 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDSWPSSADFIAADIRDATAVESAMTGADVVAHCAWVRGRNDHINI 80 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhhcccCceEEEeeCCCHHHHHHHHhCCCEEEECCCcccchHHHHH
Confidence 4688998 5999999999999999999999986422110 00001112234567788899998877543210 011
Q ss_pred c-CHHHhhccCCC--cEEEEcCCCh
Q 007040 236 I-NAECLQHIKPG--AFLVNTGSSQ 257 (620)
Q Consensus 236 I-~~~~L~~MK~g--AiLINvgRG~ 257 (620)
. ....+..|+.. ..||.+|.+.
T Consensus 81 ~GT~nLLeAa~~~gvkr~V~iSS~~ 105 (854)
T PRK05865 81 DGTANVLKAMAETGTGRIVFTSSGH 105 (854)
T ss_pred HHHHHHHHHHHHcCCCeEEEECCcH
Confidence 1 12234444332 3688888875
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=88.05 E-value=0.92 Score=44.83 Aligned_cols=37 Identities=24% Similarity=0.242 Sum_probs=33.5
Q ss_pred eecCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 159 RCRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 159 ~L~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
.+.++++.|.| .|.||..+++.|...|++|++.+|+.
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~ 40 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICG 40 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence 36789999998 79999999999999999999999875
|
|
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=88.04 E-value=0.83 Score=47.95 Aligned_cols=35 Identities=6% Similarity=0.069 Sum_probs=32.2
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
.|.+|.|.|.|.+|..++..++++|.+|++.++..
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~ 197 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGS 197 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCh
Confidence 57889999999999999999999999999998765
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.02 E-value=0.92 Score=46.29 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=33.5
Q ss_pred eeecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 158 RRCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 158 ~~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
..+.|+++.|.|. |.||+++|+.+...|++|++.+++.
T Consensus 10 ~~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~ 48 (245)
T PRK12367 10 STWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSK 48 (245)
T ss_pred HhhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCc
Confidence 3578999999986 7899999999999999999998865
|
|
| >PRK13529 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.02 E-value=6 Score=45.80 Aligned_cols=218 Identities=11% Similarity=0.067 Sum_probs=134.2
Q ss_pred HHhcCCCCeEEEEecccCCc-cchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCC
Q 007040 75 AQRRLRPYQLILCLGSSDRT-VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPL 153 (620)
Q Consensus 75 ~l~~lp~LK~I~~~gaG~D~-VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~ 153 (620)
+...+|+. +|+.=-.+..+ +.+..-.+..|++.|..--.+ |=-++|-+|+.+|-.
T Consensus 234 v~~~~P~~-~I~~EDf~~~~af~iL~ryr~~i~~FnDDiQGT---aaV~LAgll~A~r~~-------------------- 289 (563)
T PRK13529 234 VKRRFPNA-LLQFEDFAQKNARRILERYRDEICTFNDDIQGT---GAVTLAGLLAALKIT-------------------- 289 (563)
T ss_pred HHHhCCCe-EEehhhcCCchHHHHHHHhccCCCeeccccchH---HHHHHHHHHHHHHHh--------------------
Confidence 34555664 66654433332 344444445788888865444 444677777777521
Q ss_pred CCcceeecCcEEEEEeCChhhHHHHHHHhh----CCC-------EEEEECCCCC---CCC------ccccCCce------
Q 007040 154 CRGMRRCRGLVLGIVGRSASARALATRSLS----FKM-------SVLYFDVPEG---KGK------VTFPSAAR------ 207 (620)
Q Consensus 154 ~~~~~~L~GktVGIIGlG~IG~~vA~~Lka----fG~-------~V~~~dr~~~---~~~------~~~~~g~~------ 207 (620)
...|.+.+|.|+|.|..|-.+|+.+.. .|+ +++.+|+..- ... ..+.....
T Consensus 290 ---g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~ 366 (563)
T PRK13529 290 ---GEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWD 366 (563)
T ss_pred ---CCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccc
Confidence 024788999999999999999999986 588 8999998741 111 00100000
Q ss_pred ---ecCCHHhhhcCC--cEEEEcccCChhhHhhcCHHHhhccCC---CcEEEEcCCChhhcHHHHHHHHH--cCC-ccee
Q 007040 208 ---RMDTLNDLLAAS--DVISLHCAVTDETIQIINAECLQHIKP---GAFLVNTGSSQLLDDCAVKQLLI--DGT-LAGC 276 (620)
Q Consensus 208 ---~~~sL~eLL~~s--DvVil~lPlT~~T~~lI~~~~L~~MK~---gAiLINvgRG~vVDe~AL~~AL~--~G~-I~GA 276 (620)
...+|.|++..+ |+++=+-- .-+.|+++.++.|.+ ..|+.=.|......|+.-.+|.+ +|+ |.+.
T Consensus 367 ~~~~~~~L~e~v~~~kPtvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~At 442 (563)
T PRK13529 367 TEGDVISLLEVVRNVKPTVLIGVSG----QPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVAT 442 (563)
T ss_pred cccCCCCHHHHHhccCCCEEEEecC----CCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEE
Confidence 124799999988 98885432 237999999999987 89999999877654544444444 343 3322
Q ss_pred EeecCCCCCCC-C---ccccCCCcEEEcCCCCCCc-----HHHHHHHHHHHHHHHHHHH
Q 007040 277 ALDGAEGPQWM-E---AWVREMPNVLILPRSADYS-----EEVWMEIRDKAISVLQTFF 326 (620)
Q Consensus 277 aLDV~E~P~~~-~---spL~~~pNVIlTPHiAg~T-----~ea~~~~~~~a~enL~~~L 326 (620)
+-- | ||.. + ..--+..|+++=|=++-.. ...-++|.-.+++.|..+.
T Consensus 443 Gsp-f--~pv~~~G~~~~p~Q~NN~~iFPGiglGa~~~~a~~Itd~m~~aAA~alA~~v 498 (563)
T PRK13529 443 GSP-F--APVEYNGKTYPIGQCNNAYIFPGLGLGVIASGARRVTDGMLMAAAHALADCV 498 (563)
T ss_pred CCC-C--CCeeeCCeEeccCcCcceeecccchhhhhhcCCcCCCHHHHHHHHHHHHhhC
Confidence 210 1 1110 0 0112467899989755432 2234677777788777764
|
|
| >COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=87.99 E-value=0.85 Score=48.93 Aligned_cols=95 Identities=13% Similarity=0.160 Sum_probs=67.7
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC--------------ccccCCcee----------cCCHHh
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK--------------VTFPSAARR----------MDTLND 214 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~--------------~~~~~g~~~----------~~sL~e 214 (620)
...+.++.++|+|-+|-..+...+..|+-|..+|-.+...+ +.-..|... ..-+.+
T Consensus 161 tv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~a~ 240 (356)
T COG3288 161 TVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELVAE 240 (356)
T ss_pred cccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHHHH
Confidence 35667788999999999999999999999999997653211 000111111 112346
Q ss_pred hhcCCcEEEEc--ccCChhhHhhcCHHHhhccCCCcEEEEcC
Q 007040 215 LLAASDVISLH--CAVTDETIQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 215 LL~~sDvVil~--lPlT~~T~~lI~~~~L~~MK~gAiLINvg 254 (620)
..++.||||.. +|.-|. --++.++.++.||||+++|+.+
T Consensus 241 ~~~~~DivITTAlIPGrpA-P~Lvt~~mv~sMkpGSViVDlA 281 (356)
T COG3288 241 QAKEVDIVITTALIPGRPA-PKLVTAEMVASMKPGSVIVDLA 281 (356)
T ss_pred HhcCCCEEEEecccCCCCC-chhhHHHHHHhcCCCcEEEEeh
Confidence 67889999975 454443 2478899999999999999974
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=87.97 E-value=0.91 Score=49.02 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=32.5
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEG 196 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~ 196 (620)
.|.+|.|+|.|.||..++..++.+|. +|++.++...
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~ 234 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPE 234 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChH
Confidence 58899999999999999999999999 6999987653
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.93 E-value=1.6 Score=42.65 Aligned_cols=38 Identities=21% Similarity=0.168 Sum_probs=33.9
Q ss_pred eecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
.+.|+++.|.|. |.||+.+|+.|...|++|++++++..
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~ 42 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAA 42 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChH
Confidence 367999999975 99999999999999999999998763
|
|
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.92 E-value=1.9 Score=46.62 Aligned_cols=105 Identities=12% Similarity=0.106 Sum_probs=58.4
Q ss_pred cEEEEEeCChhhHHHHHHHhh--------CC--CEEEEE-CCCCCC----C-C--cc---c-cCC----c-----eecCC
Q 007040 163 LVLGIVGRSASARALATRSLS--------FK--MSVLYF-DVPEGK----G-K--VT---F-PSA----A-----RRMDT 211 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lka--------fG--~~V~~~-dr~~~~----~-~--~~---~-~~g----~-----~~~~s 211 (620)
.+|+|+|+|++|+.+++.|.. +| .+|.++ |++... . . .. . ..+ . ....+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 479999999999999999876 56 566544 433210 0 0 00 0 000 0 00125
Q ss_pred HHhhh--cCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhh-cHHHHHHHHHcCC
Q 007040 212 LNDLL--AASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLL-DDCAVKQLLIDGT 272 (620)
Q Consensus 212 L~eLL--~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vV-De~AL~~AL~~G~ 272 (620)
+++++ ..+|+|+-+.+.. ....+ ....++.|.-+|-..-|.+- ..++|.+..+.+.
T Consensus 83 ~~ell~~~~~DVvVd~t~~~-~a~~~----~~~al~~G~~VVtanK~~la~~~~el~~la~~~~ 141 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDK-NAHEW----HLEALKEGKSVVTSNKPPIAFHYDELLDLANERN 141 (336)
T ss_pred HHHHHhcCCCCEEEECCCcH-HHHHH----HHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcC
Confidence 67777 4789999777532 22222 23445566666655555443 4445665555443
|
|
| >PRK14804 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.84 E-value=1.2 Score=47.64 Aligned_cols=67 Identities=9% Similarity=0.045 Sum_probs=51.0
Q ss_pred ecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCC------c-cccC-CceecCCHHhhhcCCcEEEEcc
Q 007040 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGK------V-TFPS-AARRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~------~-~~~~-g~~~~~sL~eLL~~sDvVil~l 226 (620)
+.|++|++||- +++..+++..+..||++|.+..|...... . .... .+....++++.++.+|+|..-.
T Consensus 151 l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d~ 226 (311)
T PRK14804 151 LNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTDT 226 (311)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEeee
Confidence 68999999998 78999999999999999999998652211 0 0011 2334578999999999999743
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=87.76 E-value=0.53 Score=57.84 Aligned_cols=151 Identities=8% Similarity=-0.008 Sum_probs=90.9
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC---------CCCc-----c-------------------cc---
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG---------KGKV-----T-------------------FP--- 203 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~---------~~~~-----~-------------------~~--- 203 (620)
+.-.++.|+|.|+.|+..++.+..+|++ . .++..- .... . +.
T Consensus 201 v~P~~vVi~G~G~Vg~gA~~i~~~lg~~-~-v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~~ 278 (1042)
T PLN02819 201 ICPLVFVFTGSGNVSQGAQEIFKLLPHT-F-VEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKAD 278 (1042)
T ss_pred CCCeEEEEeCCchHHHHHHHHHhhcCCC-c-cCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchhh
Confidence 4457899999999999999999988766 1 222110 0000 0 00
Q ss_pred --CCc-eecCC-HHhhhcCCcEEEEcccCChhhHhhcCHH-HhhccCCCc----EEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 204 --SAA-RRMDT-LNDLLAASDVISLHCAVTDETIQIINAE-CLQHIKPGA----FLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 204 --~g~-~~~~s-L~eLL~~sDvVil~lPlT~~T~~lI~~~-~L~~MK~gA----iLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
..- .+... +++.+..+|+||.++-..+.+-.+|..+ ..+.||+|. +|++++=- . .|-|.
T Consensus 279 y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs~D----~--------gG~ie 346 (1042)
T PLN02819 279 YYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDITCD----I--------GGSIE 346 (1042)
T ss_pred hccCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEccC----C--------CCCee
Confidence 000 00011 4578899999999997777777889888 777899998 88887521 0 11111
Q ss_pred eeEeecCCCCCCCCccccC-------------CCcEE--EcCCCCCC-cHHHHHHHHHHHHHHHHHHHHcC
Q 007040 275 GCALDGAEGPQWMEAWVRE-------------MPNVL--ILPRSADY-SEEVWMEIRDKAISVLQTFFFDG 329 (620)
Q Consensus 275 GAaLDV~E~P~~~~spL~~-------------~pNVI--lTPHiAg~-T~ea~~~~~~~a~enL~~~L~~G 329 (620)
....+-..+.|.+. -+.|+ .=+|+.+. ..++-+.+.+..+.-+...+..|
T Consensus 347 -----~~~~~Tt~~~P~~~~~~~~~~~~~~~~~~gv~~~~VdNlP~~lPr~AS~~f~n~llpyv~~la~~g 412 (1042)
T PLN02819 347 -----FLNKTTSIEKPFFRYNPSNNSYHDDMDGDGILCMAVDILPTEFAKEASQHFGNILSPFVGSLASMK 412 (1042)
T ss_pred -----ecccCCCCcCCeEeecccccccccccCCCCeEEEEECCccccCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 11112223333333 33443 55777665 45677777777777777765444
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=87.76 E-value=0.9 Score=48.43 Aligned_cols=37 Identities=19% Similarity=0.281 Sum_probs=32.4
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCE-EEEECCCCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMS-VLYFDVPEGK 197 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~-V~~~dr~~~~ 197 (620)
.|.+|.|+|.|.+|..++..++++|.+ |++.+++...
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~ 213 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRK 213 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHH
Confidence 478999999999999999999999995 9998876543
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=87.70 E-value=1.6 Score=47.16 Aligned_cols=87 Identities=9% Similarity=0.087 Sum_probs=49.8
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCC-CEEEEE-CCCCCCCCcc---cc------C-C-ce--ecCCH-HhhhcCCcEEEEc
Q 007040 163 LVLGIVG-RSASARALATRSLSFK-MSVLYF-DVPEGKGKVT---FP------S-A-AR--RMDTL-NDLLAASDVISLH 225 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG-~~V~~~-dr~~~~~~~~---~~------~-g-~~--~~~sL-~eLL~~sDvVil~ 225 (620)
.+|+|+| .|.+|+.+++.|.... ++|.++ +......... .+ . + .. ...++ .+.+.++|+|+++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a 80 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA 80 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence 3699999 5999999999998765 687776 4432221110 10 0 0 01 11111 2345889999999
Q ss_pred ccCChhhHhhcCHHHhhccCCCcEEEEcC
Q 007040 226 CAVTDETIQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 226 lPlT~~T~~lI~~~~L~~MK~gAiLINvg 254 (620)
+|..- +..+. . .+ +..|..+|+.+
T Consensus 81 ~p~~~-s~~~~-~-~~--~~~G~~VIDls 104 (341)
T TIGR00978 81 LPSEV-AEEVE-P-KL--AEAGKPVFSNA 104 (341)
T ss_pred CCHHH-HHHHH-H-HH--HHCCCEEEECC
Confidence 99652 22222 2 12 23576666654
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.66 E-value=0.68 Score=46.42 Aligned_cols=38 Identities=26% Similarity=0.102 Sum_probs=33.4
Q ss_pred eecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
++.++++.|.|. |.||.++|+.|...|++|+..+++..
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~ 41 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQA 41 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 467899999985 78999999999999999999998753
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=87.65 E-value=0.89 Score=48.79 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=32.6
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGK 197 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~ 197 (620)
.|.+|.|+|.|.||..++..++..|+ +|++.+++...
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r 228 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDK 228 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHH
Confidence 47899999999999999999999999 69999876543
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=87.54 E-value=1.5 Score=46.36 Aligned_cols=36 Identities=8% Similarity=-0.004 Sum_probs=32.1
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEG 196 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~ 196 (620)
.|.+|.|.|.|.+|..+++.+++.|+ +|++.+++..
T Consensus 172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~ 208 (351)
T cd08233 172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEA 208 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence 57899999999999999999999999 8988887653
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=87.52 E-value=0.9 Score=47.60 Aligned_cols=38 Identities=11% Similarity=-0.057 Sum_probs=33.7
Q ss_pred eecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
.+.|+++.|.|. |.||+++|+.|...|++|++.+|+..
T Consensus 23 ~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~ 61 (315)
T PRK06196 23 DLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPD 61 (315)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 467899999987 88999999999999999999998753
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.49 E-value=0.72 Score=45.67 Aligned_cols=36 Identities=17% Similarity=0.055 Sum_probs=32.4
Q ss_pred ecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
+.++++.|.|. |.||+.+|+.|...|++|++++++.
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~ 41 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLA 41 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCH
Confidence 57899999985 9999999999999999999998765
|
|
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=87.45 E-value=1.2 Score=47.79 Aligned_cols=90 Identities=17% Similarity=0.121 Sum_probs=52.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-ccCCcee---c---CCHHhhhcCCcEEEEcccCChhhH
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT-FPSAARR---M---DTLNDLLAASDVISLHCAVTDETI 233 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~-~~~g~~~---~---~sL~eLL~~sDvVil~lPlT~~T~ 233 (620)
.|.++.|+|.|.+|..++..++..|.+|++.+......... ...|... . ..+.++....|+|+-+++....
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~~-- 257 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFHP-- 257 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchHH--
Confidence 57889999999999999999999999998887654221100 0011110 0 0122222345666666553211
Q ss_pred hhcCHHHhhccCCCcEEEEcCC
Q 007040 234 QIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgR 255 (620)
+ ...+..++++..+|.+|.
T Consensus 258 --~-~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 258 --L-EPYLSLLKLDGKLILMGV 276 (357)
T ss_pred --H-HHHHHHhccCCEEEEECC
Confidence 1 224556666776766653
|
|
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=87.40 E-value=0.94 Score=46.95 Aligned_cols=36 Identities=11% Similarity=0.028 Sum_probs=32.3
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
.|.+|.|+|.|.+|..+++.++..|.+|++...+..
T Consensus 155 ~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~ 190 (319)
T cd08242 155 PGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSE 190 (319)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHH
Confidence 578899999999999999999999999998887653
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=87.37 E-value=0.71 Score=50.15 Aligned_cols=107 Identities=7% Similarity=-0.030 Sum_probs=67.4
Q ss_pred cEEEEEeCChhhHHHHHHHhhC--CCEEE-EECCCCCCCCcc-ccCCceecCCHHhhhcCCcEEEEcccCC-h-hhHhhc
Q 007040 163 LVLGIVGRSASARALATRSLSF--KMSVL-YFDVPEGKGKVT-FPSAARRMDTLNDLLAASDVISLHCAVT-D-ETIQII 236 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf--G~~V~-~~dr~~~~~~~~-~~~g~~~~~sL~eLL~~sDvVil~lPlT-~-~T~~lI 236 (620)
.+|||||. .+|+..++.++.. ++++. ++|+........ ...++..+.++++++.+.|++++++|.+ + .++.-+
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e~ 82 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSAL 82 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHHH
Confidence 57999999 6899999888765 47766 467776433311 1224456789999999999999999853 2 222222
Q ss_pred CHHHhhccCCCc-EEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 237 NAECLQHIKPGA-FLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 237 ~~~~L~~MK~gA-iLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
. .+.|+.|. +|+--==. +-+.++|+++.++..+.
T Consensus 83 a---~~aL~aGkHVL~EKPla-~~Ea~el~~~A~~~g~~ 117 (343)
T TIGR01761 83 A---RALLARGIHVLQEHPLH-PRDIQDLLRLAERQGRR 117 (343)
T ss_pred H---HHHHhCCCeEEEcCCCC-HHHHHHHHHHHHHcCCE
Confidence 2 33344443 33322111 45666688888776665
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 | Back alignment and domain information |
|---|
Probab=87.34 E-value=1.8 Score=46.14 Aligned_cols=92 Identities=11% Similarity=0.090 Sum_probs=57.4
Q ss_pred EEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC---cc----------------------ccCC--ce----ec-C
Q 007040 164 VLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK---VT----------------------FPSA--AR----RM-D 210 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~---~~----------------------~~~g--~~----~~-~ 210 (620)
+|.|||.|.+|.++++.|...|+ ++..+|...-... .. .... +. .. +
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 48899999999999999998888 7888886531111 00 0000 00 01 1
Q ss_pred CHHhhhcCCcEEEEcccCChhhHhhcCHHHhhcc-----CCCcEEEEcCCC
Q 007040 211 TLNDLLAASDVISLHCAVTDETIQIINAECLQHI-----KPGAFLVNTGSS 256 (620)
Q Consensus 211 sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~M-----K~gAiLINvgRG 256 (620)
.-.+++.+.|+|+.++- +.+++..++....... +.+.-||..|..
T Consensus 81 ~~~~f~~~fdvVi~alD-n~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~ 130 (291)
T cd01488 81 KDEEFYRQFNIIICGLD-SIEARRWINGTLVSLLLYEDPESIIPLIDGGTE 130 (291)
T ss_pred hhHHHhcCCCEEEECCC-CHHHHHHHHHHHHHhccccccccCccEEEEEEc
Confidence 12467788888888765 4467777777655543 234557776653
|
UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.31 E-value=0.79 Score=46.04 Aligned_cols=37 Identities=8% Similarity=0.185 Sum_probs=33.1
Q ss_pred ecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCC
Q 007040 160 CRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 160 L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
+.|+++.|.|.+. ||+++|+.|...|++|+.++++..
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~ 40 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQS 40 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 6789999998766 999999999999999999998753
|
|
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=87.28 E-value=1.2 Score=49.58 Aligned_cols=67 Identities=18% Similarity=0.128 Sum_probs=44.4
Q ss_pred ecCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcc----cc-CC--ceecCCHHhhhcCCcEEEEcc
Q 007040 160 CRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVT----FP-SA--ARRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 160 L~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~----~~-~g--~~~~~sL~eLL~~sDvVil~l 226 (620)
-..++|.|.| .|-||+.+++.|.+.|++|+++|+........ .. .. ....+-++..+..+|+|+-+.
T Consensus 118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~D~ViHlA 192 (436)
T PLN02166 118 RKRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENLVHLFGNPRFELIRHDVVEPILLEVDQIYHLA 192 (436)
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCccHhHhhhhccCCceEEEECccccccccCCCEEEECc
Confidence 3667899998 69999999999999999999999753211100 00 01 112233445566789887665
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=87.25 E-value=1.9 Score=46.75 Aligned_cols=87 Identities=10% Similarity=0.130 Sum_probs=49.9
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCC---EEEEECCCCCCCCccccCCc-eecCCHH-hhhcCCcEEEEcccCChhhHhhc
Q 007040 163 LVLGIVGR-SASARALATRSLSFKM---SVLYFDVPEGKGKVTFPSAA-RRMDTLN-DLLAASDVISLHCAVTDETIQII 236 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafG~---~V~~~dr~~~~~~~~~~~g~-~~~~sL~-eLL~~sDvVil~lPlT~~T~~lI 236 (620)
.+|+|||. |.+|+++.+.|...++ ++.++......+......+. ....+++ +.++.+|+|++++|.. ....++
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~~~~~~~~vD~vFla~p~~-~s~~~v 83 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFDFSQVQLAFFAAGAA-VSRSFA 83 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeCChHHhcCCCEEEEcCCHH-HHHHHH
Confidence 57999996 9999999999994433 44444333222221111111 1112222 2258899999999942 233322
Q ss_pred CHHHhhccCCCcEEEEcC
Q 007040 237 NAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 237 ~~~~L~~MK~gAiLINvg 254 (620)
. .. .+.|..+|+.+
T Consensus 84 ~-~~---~~~G~~VIDlS 97 (336)
T PRK05671 84 E-KA---RAAGCSVIDLS 97 (336)
T ss_pred H-HH---HHCCCeEEECc
Confidence 2 11 24588899987
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=87.25 E-value=1 Score=49.98 Aligned_cols=107 Identities=11% Similarity=0.060 Sum_probs=64.8
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc-----cccCCceec--CCH-----HhhhcCCcEEEEcccCChh
Q 007040 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV-----TFPSAARRM--DTL-----NDLLAASDVISLHCAVTDE 231 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~-----~~~~g~~~~--~sL-----~eLL~~sDvVil~lPlT~~ 231 (620)
+|.|||+|..|.+.|+.|...|+.|.++|........ ....++... ... .+.+...|+|+..-...+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~gi~~~ 81 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPGIPWD 81 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCCCCCC
Confidence 5899999999999999999999999999976543211 111232221 112 2467789998884433322
Q ss_pred hH----------hhcCHH-Hh-hccCC-CcEEEEcCCChhhcHHHHHHHHHc
Q 007040 232 TI----------QIINAE-CL-QHIKP-GAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 232 T~----------~lI~~~-~L-~~MK~-gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
.- .++..- .+ ..+++ ..+-|--+-|+.--..-|...|..
T Consensus 82 ~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~ 133 (459)
T PRK02705 82 HPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQA 133 (459)
T ss_pred CHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 11 123322 22 33333 344455556888777777777764
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=87.19 E-value=0.96 Score=44.98 Aligned_cols=36 Identities=14% Similarity=0.103 Sum_probs=32.9
Q ss_pred ecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
+.|+++.|.|. |.||..+|+.|...|++|++.+++.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~ 39 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE 39 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch
Confidence 68999999997 7999999999999999999999754
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 620 | ||||
| 3ga0_A | 358 | Ctbp1BARS GLY172->glu Mutant Structure: Impairing N | 6e-25 | ||
| 1hl3_A | 358 | CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK | 6e-25 | ||
| 1hku_A | 358 | CtbpBARS: A DUAL-Function Protein Involved In Trans | 2e-24 | ||
| 1mx3_A | 347 | Crystal Structure Of Ctbp Dehydrogenase Core Holo F | 2e-24 | ||
| 2ome_A | 336 | Crystal Structure Of Human Ctbp2 Dehydrogenase Comp | 2e-24 | ||
| 3k5p_A | 416 | Crystal Structure Of Amino Acid-Binding Act: D-Isom | 9e-12 | ||
| 3kb6_A | 334 | Crystal Structure Of D-lactate Dehydrogenase From A | 2e-10 | ||
| 1j4a_A | 333 | Insights Into Domain Closure, Substrate Specificity | 7e-10 | ||
| 2dld_A | 337 | D-Lactate Dehydrogenase Complexed With Nadh And Oxa | 8e-10 | ||
| 1j49_A | 333 | Insights Into Domain Closure, Substrate Specificity | 1e-09 | ||
| 1dxy_A | 333 | Structure Of D-2-Hydroxyisocaproate Dehydrogenase L | 2e-09 | ||
| 2p9g_A | 410 | Crystal Structure Of Serine Bound G336v,G337v Doubl | 4e-09 | ||
| 2p9c_A | 410 | Crystal Structure Of Serine Bound G336v Mutant Of E | 4e-09 | ||
| 4ebf_A | 334 | Semet Thermostable Phosphite Dehydrogenase Glu175-A | 9e-09 | ||
| 4e5p_A | 332 | Thermostable Phosphite Dehydrogenase A176r Variant | 1e-08 | ||
| 4e5n_A | 330 | Thermostable Phosphite Dehydrogenase In Complex Wit | 1e-08 | ||
| 4e5m_A | 329 | Thermostable Phosphite Dehydrogenase E175aA176R IN | 1e-08 | ||
| 4e5k_A | 329 | Thermostable Phosphite Dehydrogenase In Complex Wit | 1e-08 | ||
| 1psd_A | 409 | The Allosteric Ligand Site In The Vmax-Type Coopera | 2e-08 | ||
| 1gdh_A | 320 | Crystal Structure Of A Nad-Dependent D-Glycerate De | 2e-08 | ||
| 2yq4_A | 343 | Crystal Structure Of D-isomer Specific 2-hydroxyaci | 6e-08 | ||
| 2dbr_A | 334 | Crystal Structure Of Glyoxylate Reductase (Ph0597) | 7e-08 | ||
| 1sc6_A | 404 | Crystal Structure Of W139g D-3-Phosphoglycerate Deh | 7e-08 | ||
| 3fn4_A | 401 | Apo-form Of Nad-dependent Formate Dehydrogenase Fro | 8e-08 | ||
| 2gsd_A | 402 | Nad-dependent Formate Dehydrogenase From Bacterium | 8e-08 | ||
| 1wwk_A | 307 | Crystal Structure Of Phosphoglycerate Dehydrogenase | 8e-08 | ||
| 2dbq_A | 334 | Crystal Structure Of Glyoxylate Reductase (Ph0597) | 2e-07 | ||
| 1ygy_A | 529 | Crystal Structure Of D-3-Phosphoglycerate Dehydroge | 2e-07 | ||
| 3ddn_A | 528 | Crystal Structure Of Hydroxypyruvic Acid Phosphate | 3e-07 | ||
| 3ba1_A | 333 | Structure Of Hydroxyphenylpyruvate Reductase From C | 5e-07 | ||
| 2gug_A | 401 | Nad-dependent Formate Dehydrogenase From Pseudomona | 5e-07 | ||
| 2go1_A | 401 | Nad-Dependent Formate Dehydrogenase From Pseudomona | 5e-07 | ||
| 2nac_A | 393 | High Resolution Structures Of Holo And Apo Formate | 5e-07 | ||
| 1yba_A | 410 | The Active Form Of Phosphoglycerate Dehydrogenase L | 7e-07 | ||
| 1xdw_A | 331 | Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase | 7e-07 | ||
| 2d0i_A | 333 | Crystal Structure Ph0520 Protein From Pyrococcus Ho | 8e-07 | ||
| 3hg7_A | 324 | Crystal Structure Of D-Isomer Specific 2-Hydroxyaci | 9e-07 | ||
| 2w2l_D | 348 | Crystal Structure Of The Holo Forms Of Rhodotorula | 2e-06 | ||
| 2w2k_A | 348 | Crystal Structure Of The Apo Forms Of Rhodotorula G | 2e-06 | ||
| 2cuk_A | 311 | Crystal Structure Of Tt0316 Protein From Thermus Th | 2e-06 | ||
| 2w2k_B | 348 | Crystal Structure Of The Apo Forms Of Rhodotorula G | 2e-06 | ||
| 3naq_A | 357 | Apo-Form Of Nad-Dependent Formate Dehydrogenase Fro | 1e-05 | ||
| 3n7u_A | 351 | Nad-Dependent Formate Dehydrogenase From Higher-Pla | 1e-05 | ||
| 3gg9_A | 352 | Crystal Structure Of Putative D-3-Phosphoglycerate | 6e-05 | ||
| 4dgs_A | 340 | The Crystals Structure Of Dehydrogenase From Rhizob | 7e-05 | ||
| 2j6i_A | 364 | Candida Boidinii Formate Dehydrogenase (Fdh) C-Term | 4e-04 | ||
| 2o4c_A | 380 | Crystal Structure Of D-erythronate-4-phosphate Dehy | 5e-04 | ||
| 2fss_A | 365 | Candida Boidinii Formate Dehydrogenase (Fdh) K47e M | 6e-04 |
| >pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H) Binding And Dimerization Length = 358 | Back alignment and structure |
|
| >pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK PEPTIDE Length = 358 | Back alignment and structure |
|
| >pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In Transcription Corepression And Golgi Membrane Fission Length = 358 | Back alignment and structure |
|
| >pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form Length = 347 | Back alignment and structure |
|
| >pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed With Nad(H) Length = 336 | Back alignment and structure |
|
| >pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain From Brucella Melitensis Length = 416 | Back alignment and structure |
|
| >pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex Aeolicus Complexed With Nad And Lactic Acid Length = 334 | Back alignment and structure |
|
| >pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333 | Back alignment and structure |
|
| >pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate Length = 337 | Back alignment and structure |
|
| >pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333 | Back alignment and structure |
|
| >pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase Length = 333 | Back alignment and structure |
|
| >pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410 | Back alignment and structure |
|
| >pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410 | Back alignment and structure |
|
| >pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala Mutant Length = 334 | Back alignment and structure |
|
| >pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In Complex With Nad Length = 332 | Back alignment and structure |
|
| >pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad Length = 330 | Back alignment and structure |
|
| >pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX WITH NADP Length = 329 | Back alignment and structure |
|
| >pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad And Sulfite Length = 329 | Back alignment and structure |
|
| >pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative Enzyme Phosphoglycerate Dehydrogenase Length = 409 | Back alignment and structure |
|
| >pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate Dehydrogenase At 2.4 Angstroms Resolution Length = 320 | Back alignment and structure |
|
| >pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid Dehydrogenase From Lactobacillus Delbrueckii Ssp. Bulgaricus Length = 343 | Back alignment and structure |
|
| >pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1) Length = 334 | Back alignment and structure |
|
| >pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate Dehydrogenase Complexed With Nad+ Length = 404 | Back alignment and structure |
|
| >pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c-1 In Closed Conformation Length = 401 | Back alignment and structure |
|
| >pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c2 In Complex With Nad And Azide Length = 402 | Back alignment and structure |
|
| >pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 307 | Back alignment and structure |
|
| >pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41) Length = 334 | Back alignment and structure |
|
| >pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase From Mycobacterium Tuberculosis Length = 529 | Back alignment and structure |
|
| >pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound D-3- Phosphoglycerate Dehydrogenase In Mycobacterium Tuberculosis Length = 528 | Back alignment and structure |
|
| >pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu Length = 333 | Back alignment and structure |
|
| >pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas Sp.101 In Complex With Formate Length = 401 | Back alignment and structure |
|
| >pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas Sp.101 Length = 401 | Back alignment and structure |
|
| >pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate Dehydrogenase Length = 393 | Back alignment and structure |
|
| >pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase Length = 410 | Back alignment and structure |
|
| >pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From Acidaminococcus Fermentans Length = 331 | Back alignment and structure |
|
| >pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii Ot3 Length = 333 | Back alignment and structure |
|
| >pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid Dehydrogenase Family Protein From Aeromonas Salmonicida Subsp. Salmonicida A449 Length = 324 | Back alignment and structure |
|
| >pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 2.5a Length = 348 | Back alignment and structure |
|
| >pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a. Length = 348 | Back alignment and structure |
|
| >pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus Thermophilus Hb8 Length = 311 | Back alignment and structure |
|
| >pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a Length = 348 | Back alignment and structure |
|
| >pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabidopsis Thaliana Length = 357 | Back alignment and structure |
|
| >pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid Thaliana In Complex With Nad And Azide Length = 351 | Back alignment and structure |
|
| >pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate Dehydrogenase Oxidoreductase From Ralstonia Solanacearum Length = 352 | Back alignment and structure |
|
| >pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium Meliloti Length = 340 | Back alignment and structure |
|
| >pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal Mutant Length = 364 | Back alignment and structure |
|
| >pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate Dehydrogenase Complexed With Nad Length = 380 | Back alignment and structure |
|
| >pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant Length = 365 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 620 | |||
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 8e-36 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 6e-34 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 8e-34 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 2e-33 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 5e-33 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 1e-32 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 9e-32 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 1e-31 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 1e-31 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 2e-31 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 3e-31 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 7e-31 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 1e-30 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 5e-30 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 4e-29 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 1e-28 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 1e-27 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 1e-25 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 3e-25 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 9e-25 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 2e-24 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 9e-24 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 3e-23 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 2e-22 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 8e-22 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 2e-21 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 9e-21 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 2e-20 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 2e-18 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 6e-18 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 1e-17 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 2e-17 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-05 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 6e-05 |
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 8e-36
Identities = 42/226 (18%), Positives = 81/226 (35%), Gaps = 17/226 (7%)
Query: 115 AEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASA 174
A+ +A+ +ALLL +R + + V + +G + ++G
Sbjct: 83 ADAVAEFALALLLAPYKRIIQYGE-KMKRGDYGRDV-----EIPLIQGEKVAVLGLGEIG 136
Query: 175 RALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQ 234
+ + V F K R ++L + L + + T
Sbjct: 137 TRVGKILAALGAQVRGFS-RTPK-----EGPWRFTNSLEEALREARAAVCALPLNKHTRG 190
Query: 235 IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD--GAEGPQWMEAWVR 292
++ + L + A VN G +++LD V ++L + A D +A
Sbjct: 191 LVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFF 250
Query: 293 EMPNVLILP--RSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAI 336
+PNV+ P +E VW ++ +A+ L T + G P+N
Sbjct: 251 SLPNVVATPWVAGGYGNERVWRQMVMEAVRNLIT-YATGGRPRNIA 295
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 6e-34
Identities = 53/244 (21%), Positives = 95/244 (38%), Gaps = 5/244 (2%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALS--ASGWLGSVQP 152
+D + G+ + + +D + L+L + R R A + +
Sbjct: 94 LDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLE 153
Query: 153 LCRGMRRCRGLVLGIVGRSASARALATR-SLSFKMSVLYFDVPEGKGKVTFPSAARRMDT 211
+ + RG VLG VG A + +A + M ++Y+DV + A R+D+
Sbjct: 154 IGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDS 213
Query: 212 LNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDG 271
L +L SD +S+ T +I+ +KPG+ +VNT ++ A+ L G
Sbjct: 214 LEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSG 273
Query: 272 TLAGCALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGV 330
L LD E PQ + + EM +V + + E + E ++ + F G
Sbjct: 274 KLLSAGLDVHEFEPQ-VSKELIEMKHVTLTTHIGGVAIETFHEFERLTMTNIDRFLLQGK 332
Query: 331 IPKN 334
Sbjct: 333 PLLT 336
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 8e-34
Identities = 77/250 (30%), Positives = 134/250 (53%), Gaps = 14/250 (5%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGW---LGSVQ 151
+D A DLG+ + +V + EE AD+ + +L L RR L + AL + ++
Sbjct: 99 IDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQ-ALREGTRVQSVEQIR 157
Query: 152 PLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFD--VPEGKGKVTFPSAARRM 209
+ G R RG LGI+G +A+A R+ +F +VL++D + +G + +R+
Sbjct: 158 EVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVERAL---GLQRV 214
Query: 210 DTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269
TL DLL SD ++LHC + + +IN ++ ++ GAFLVNT L+D+ A+ Q L
Sbjct: 215 STLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALK 274
Query: 270 DGTLAGCALD--GAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDK-AISVLQTFF 326
+G + G ALD +E + + +++ PN++ P +A YSE+ +E+R++ A + +
Sbjct: 275 EGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEAAREIRR--A 332
Query: 327 FDGVIPKNAI 336
G IP +
Sbjct: 333 ITGRIPDSLK 342
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 2e-33
Identities = 71/321 (22%), Positives = 124/321 (38%), Gaps = 48/321 (14%)
Query: 49 LGRLADGKIEAAAA---VLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADL-G 104
+ + ++ V A A + L + + G + + L
Sbjct: 36 VEPMMPFVMDELQRNYSVHRLYQAADRPALEAALPSIRAVATGGG-AG-LSNEWMEKLPS 93
Query: 105 LRLI--------HVDTSRA---------------EEIADTVMALLLGLLRRTHLLARHAL 141
L +I VD +RA +++AD +AL+L +LRR R +
Sbjct: 94 LGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRL-V 152
Query: 142 SASGWLGSVQ-PLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFD---VPEGK 197
W Q PL + R +G++G RALA+R+ +F MSV Y++ +
Sbjct: 153 REGRWAAGEQLPLGHSPKGKR---IGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSG-- 207
Query: 198 GKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQ 257
+ DL SDV+++ A + T I++A LQ + P +VN
Sbjct: 208 ------VDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGN 261
Query: 258 LLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIRD 316
++D+ A+ + L GT+AG LD P + PN +++P + E M +
Sbjct: 262 VVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEF-HTTPNTVLMPHQGSATVETRMAMGK 320
Query: 317 KAISVLQTFFFDGVIPKNAIS 337
++ L F G N ++
Sbjct: 321 LVLANLAA-HFAGEKAPNTVN 340
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 5e-33
Identities = 64/294 (21%), Positives = 106/294 (36%), Gaps = 33/294 (11%)
Query: 71 LPRAA-QRRLRPYQLILCLGSSDRTVDSAL--AADLGLRLI--------HVDTSRAEE-- 117
+ + +L + ++ + ++ I H+D +
Sbjct: 33 ITIDEMIETAKSVDALLITLN-EK-CRKEVIDRIPENIKCISTYSIGFDHIDLDACKARG 90
Query: 118 I-------------ADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLV 164
I A+ M LLLG RR + + W G G +
Sbjct: 91 IKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKM-IRTRSWPGWEPLELVGEK-LDNKT 148
Query: 165 LGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISL 224
LGI G + +ALA R+ F M + YFD A D+L+ LL+ S SL
Sbjct: 149 LGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSL 208
Query: 225 HCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG- 283
+ T ET N ++ + GA +VNT L+D+ V L G LA D G
Sbjct: 209 NAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGE 268
Query: 284 PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAIS 337
P E + ++PN + P + + ++ +A ++ F G A++
Sbjct: 269 PNINEGY-YDLPNTFLFPHIGSAATQAREDMAHQANDLIDA-LFGGADMSYALA 320
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 1e-32
Identities = 64/351 (18%), Positives = 126/351 (35%), Gaps = 63/351 (17%)
Query: 4 NRFPAAMPHRDNPTPLPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLADGKIEAAAAV 63
+ + + R + V+ + + + ++ L + L R +
Sbjct: 8 HHHSSGLVPRGSHMEAIGVLMMCPMSTYLEQE-------LDKRFKLFRYWTQPAQRDFLA 60
Query: 64 LLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADL-GLRLI--------HVDTSR 114
+ + ++ ++ D+ L L L ++ VD +
Sbjct: 61 -------------LQAESIRAVVGNSNA--GADAELIDALPKLEIVSSFSVGLDKVDLIK 105
Query: 115 A---------------EEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRR 159
+++AD + L+L +LRR ++ + W L
Sbjct: 106 CEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKY-VRRGAWKFGDFKLTTKFSG 164
Query: 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFD---VPEGKGKVTFPSAARRMDTLNDLL 216
R +GI+G A+A R+ +F + YF P + ++ +L
Sbjct: 165 KR---VGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPN--------TNYTYYGSVVELA 213
Query: 217 AASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGC 276
+ SD++ + C +T ET IIN E + + P L+N G +D+ + L++G L G
Sbjct: 214 SNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGA 273
Query: 277 ALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFF 326
LD E P+ E + NV++LP + E + D + L+ F
Sbjct: 274 GLDVFEREPEVPEKL-FGLENVVLLPHVGSGTVETRKVMADLVVGNLEAHF 323
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 9e-32
Identities = 57/261 (21%), Positives = 94/261 (36%), Gaps = 32/261 (12%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLC 154
+D A +LG + V IA+ + + LLR T + + V
Sbjct: 83 IDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAY-TTSRTAKKNF--KVDAFM 139
Query: 155 RGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRM----D 210
+ R +G+VG R A +V+ DV F
Sbjct: 140 FS-KEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDV--------FEIKGIEDYCTQV 190
Query: 211 TLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270
+L+++L SD+I++H E ++ + L+ +K GA LVN QL+D AV + +
Sbjct: 191 SLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVES 250
Query: 271 GTLAGCALD--GAEGPQWMEAW-------------VREMPNVLILPRSADYSEEVWMEIR 315
G L G D E + + V P VLI P Y++E +
Sbjct: 251 GKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNMV 310
Query: 316 DKAISVLQTFFFDGVIPKNAI 336
+ + L+ + N I
Sbjct: 311 EVSYQNLKD-LAETGDCPNKI 330
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 1e-31
Identities = 60/263 (22%), Positives = 91/263 (34%), Gaps = 35/263 (13%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLC 154
+D G+RL +V IA+ + L LLR + L A +
Sbjct: 82 IDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGK-VQAQLQAGDY--EKAGTF 138
Query: 155 RGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMD---- 210
G + +G++G + F V+ +D +P D
Sbjct: 139 IG-KELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDP--------YPMKGDHPDFDYV 189
Query: 211 TLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270
+L DL SDVI LH ++ IIN +KPGA ++NT L+D A+ L
Sbjct: 190 SLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKS 249
Query: 271 GTLAGCALD--GAEGPQWMEAWV------------REMPNVLILPRSADYSEEVWMEIRD 316
G LAG +D E + MPNV++ P A Y+E +
Sbjct: 250 GKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNM-- 307
Query: 317 KAISVLQTF--FFDGVIPKNAIS 337
LQ F ++
Sbjct: 308 -VYFSLQHLVDFLTKGETSTEVT 329
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 1e-31
Identities = 61/294 (20%), Positives = 108/294 (36%), Gaps = 35/294 (11%)
Query: 71 LPRAA-QRRLRPYQLILCLGSSDRTVDSALAADLG--LRLI--------HVDTSRA---- 115
L + R +++ + + + + + L L+ I H+D + A
Sbjct: 60 LTPSGIASRAHGAEVLFVTAT-EA-ITAEVIRKLQPGLKTIATLSVGYDHIDMAAARSLG 117
Query: 116 -----------EEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLV 164
+ A+ M L+L RR + R + + W G G G
Sbjct: 118 IKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRM-VRSGSWPGWGPTQLLG-MGLTGRR 175
Query: 165 LGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISL 224
LGI G RA+ATR+ F +++ Y + + A DTL+ LL ASD+ +
Sbjct: 176 LGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALEEG--AIYHDTLDSLLGASDIFLI 233
Query: 225 HCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG- 283
E ++ + + I GA ++N L++D A+ + L L LD
Sbjct: 234 AAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANE 293
Query: 284 PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAIS 337
P + R + N+ + P + E + I ++ +P N IS
Sbjct: 294 PAIDPRY-RSLDNIFLTPHIGSATHETRDAMGWLLIQGIEA-LNQSDVPDNLIS 345
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 2e-31
Identities = 63/265 (23%), Positives = 103/265 (38%), Gaps = 41/265 (15%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHL----LARHALSASGWLGSV 150
+D A A +LG ++ +V IA+ +LR+ +ARH L + +G
Sbjct: 84 IDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIG-- 141
Query: 151 QPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR--- 207
R R V+G+VG + F V+ +D+ F +
Sbjct: 142 -------REVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDI--------FRNPELEKK 186
Query: 208 --RMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVK 265
+D+L+DL +DVISLH + +IN E + +K +VN L+D AV
Sbjct: 187 GYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVI 246
Query: 266 QLLIDGTLAGCALD--GAEGPQWMEAWV------------REMPNVLILPRSADYSEEVW 311
+ L G + G A+D E + E W PNVL+ P++A Y+
Sbjct: 247 RGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAV 306
Query: 312 MEIRDKAISVLQTFFFDGVIPKNAI 336
+ KA +G + +
Sbjct: 307 RNMVVKAFDNNLE-LVEGKEAETPV 330
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Length = 330 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 7e-31
Identities = 72/298 (24%), Positives = 112/298 (37%), Gaps = 38/298 (12%)
Query: 71 LPRAA-QRRLRPYQLILCLGSSDRTVDSALAADLGLRLI--------HVDTSRA------ 115
L R RR R Q ++ DR L A LR+I + D
Sbjct: 34 LTREEILRRCRDAQAMMAF-MPDRVDADFLQACPELRVIGCALKGFDNFDVDACTARGVW 92
Query: 116 ---------EEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLG 166
A+ + L +GL R + + + G QP G +G
Sbjct: 93 LTFVPDLLTVPTAELAIGLAVGLGRHLRAADAF-VRSGKFRG-WQPRFYG-TGLDNATVG 149
Query: 167 IVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHC 226
+G A A+A R + ++ Y + + R++ ++L A+SD I L
Sbjct: 150 FLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQVA-CSELFASSDFILLAL 208
Query: 227 AVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD------- 279
+ +T+ ++NAE L ++PGA LVN ++D+ AV L G L G A D
Sbjct: 209 PLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDW 268
Query: 280 -GAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAI 336
A+ PQ ++ + PN L P V +EI A + G P NA+
Sbjct: 269 ARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQ-ALAGERPINAV 325
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 1e-30
Identities = 85/304 (27%), Positives = 126/304 (41%), Gaps = 37/304 (12%)
Query: 58 EAAAAVLLHSLAYLPRAA-QRRLRPYQLILCLGSSDRTVDSALAADLGLRLI-------- 108
E V +H +LP+A +R+ ++ DR + GL++I
Sbjct: 19 ERGLEVEVHRGLFLPKAELLKRVEGAVGLIPTVE-DRIDAEVMDRAKGLKVIACYSVGVD 77
Query: 109 HVDTSRAEE--I-------------ADTVMALLLGLLRRTHLLARHALSASGWLGSVQPL 153
HVD A E I AD +ALLL + RR A + W L
Sbjct: 78 HVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAY-ARDGLWKAWHPEL 136
Query: 154 CRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLN 213
G +GL LG+VG +A+A R+L+F M V+Y F S L
Sbjct: 137 LLG-LDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLPYPFLS-------LE 188
Query: 214 DLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTL 273
+LL +DV+SLH +T ET +++N E L +K GA L+NT L+D A+ + L G L
Sbjct: 189 ELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEAL-RGHL 247
Query: 274 AGCALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIP 332
G LD + P + +PN +I P + + A+ L +G P
Sbjct: 248 FGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVENLLA-VLEGREP 306
Query: 333 KNAI 336
N +
Sbjct: 307 PNPV 310
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330 | Back alignment and structure |
|---|
Score = 119 bits (302), Expect = 5e-30
Identities = 56/258 (21%), Positives = 96/258 (37%), Gaps = 32/258 (12%)
Query: 71 LPRAA-QRRLRPYQLILCLGSSDRTVDSAL--AADLGLRLI--------HVDTSRAEE-- 117
+P +R + +LCL S D VD + AA L++I H+ ++
Sbjct: 42 IPAKELERGVAGAHGLLCLLS-DH-VDKRILDAAGANLKVISTMSVGIDHLALDEIKKRG 99
Query: 118 I-------------ADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLV 164
I A+ ++LLL RR + GW G
Sbjct: 100 IRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEE-VKNGGWTSWKPLWLCG-YGLTQST 157
Query: 165 LGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISL 224
+GI+G +A+A R F + + + + + A + +L A SD I +
Sbjct: 158 VGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVS-TPELAAQSDFIVV 216
Query: 225 HCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG- 283
C++T T + N + Q +K A +N +++ + Q L G +A LD
Sbjct: 217 ACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPE 276
Query: 284 PQWMEAWVREMPNVLILP 301
P + + N +ILP
Sbjct: 277 PLPTNHPLLTLKNCVILP 294
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Length = 393 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 4e-29
Identities = 59/252 (23%), Positives = 95/252 (37%), Gaps = 23/252 (9%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLC 154
VD A D + + V + +A+ V+ ++L L+R + GW ++
Sbjct: 127 VDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLP-SHEWARKGGW--NIADCV 183
Query: 155 RGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLND 214
+ +G V A+ R F + + Y D V T D
Sbjct: 184 SHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATRED 243
Query: 215 LLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274
+ DV++L+C + ET +IN E L+ K GA++VNT +L D AV + L G LA
Sbjct: 244 MYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLA 303
Query: 275 GCALD--GAEGPQWMEAWVREMPNVLILP------RSA--DYSEEVWMEIRDKAISVLQT 324
G A D + W R MP + P +A Y+ +
Sbjct: 304 GYAGDVWFPQPAPKDHPW-RTMPYNGMTPHISGTTLTAQARYAAGTREILEC-------- 354
Query: 325 FFFDGVIPKNAI 336
FF+G ++
Sbjct: 355 -FFEGRPIRDEY 365
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 1e-28
Identities = 67/296 (22%), Positives = 115/296 (38%), Gaps = 38/296 (12%)
Query: 71 LPRAA-QRRLRPYQLILCLGSSDRTVDSALAADLGLRLI--------HVDTSRAEE--I- 118
+PR ++++ ++ + S+R LR++ ++D A + I
Sbjct: 34 IPREILLKKVKEVDALVTM-LSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIY 92
Query: 119 ------------ADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGM---RRCRGL 163
AD ALLL R R + + W G
Sbjct: 93 VTNTPDVLTDATADLAFALLLATARHVVKGDR-FVRSGEWKKRGVAWHPKWFLGYDVYGK 151
Query: 164 VLGIVGRSASARALATRSLSFKMSVLYFD---VPEGKGKVTFPSAARRMDTLNDLLAASD 220
+GI+G +A+A R+ F M +LY+ E + ++ A L DLL SD
Sbjct: 152 TIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKEEVEREL----NAEFKP-LEDLLRESD 206
Query: 221 VISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280
+ L +T ET +IN E L+ +K A L+N +++D A+ + L +G +AG LD
Sbjct: 207 FVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDV 266
Query: 281 AEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAI 336
E + + ++ NV++ P S + + L F G IP +
Sbjct: 267 FEEEPYYNEELFKLDNVVLTPHIGSASFGAREGMAELVAKNLIA-FKRGEIPPTLV 321
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 1e-27
Identities = 51/252 (20%), Positives = 87/252 (34%), Gaps = 23/252 (9%)
Query: 95 VDSALAADLGLRLIHVDTSR---AEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQ 151
VD L + V + A+ I+++V+A +L ++R H + A W
Sbjct: 72 VDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGARQWALP-- 129
Query: 152 PLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDT 211
G L I G ++LA ++ + M V+ + G
Sbjct: 130 ---MTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVN-TTGH-PADHFHETVAFTA 184
Query: 212 LNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDG 271
D LA ++ I +T T + + E Q K L+N G +D A+ L
Sbjct: 185 TADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHH 244
Query: 272 TLAGCALD-------GAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQT 324
L+ ALD + P W + +VLI P + + +
Sbjct: 245 QLSMAALDVTEPEPLPTDHPLW------QRDDVLITPHISGQIAHFRATVFPIFAANFAQ 298
Query: 325 FFFDGVIPKNAI 336
F DG + +N +
Sbjct: 299 FVKDGTLVRNQV 310
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 1e-25
Identities = 34/193 (17%), Positives = 65/193 (33%), Gaps = 34/193 (17%)
Query: 119 ADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALA 178
A+ ALLL + + A + S G LGI+G R +A
Sbjct: 86 AEHAFALLLAHAKNILE-NNELMKAGIFRQS-----PTTL-LYGKALGILGYGGIGRRVA 138
Query: 179 TRSLSFKMSVLYFDVPEGKGKVTFPSAAR---RMDTLNDLLAASDVISLHCAVTDETIQI 235
+ +F M V+ + ++ DL SD + + +TD+T +
Sbjct: 139 HLAKAFGMRVIAYTR--------SSVDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGM 190
Query: 236 INAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVRE-- 293
+N+ L + + +VN + ++ + L + + D W E
Sbjct: 191 VNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSD---------VWWNEPE 241
Query: 294 -----MPNVLILP 301
+ N ++ P
Sbjct: 242 ITETNLRNAILSP 254
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 3e-25
Identities = 50/215 (23%), Positives = 80/215 (37%), Gaps = 12/215 (5%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLC 154
+D D G+ ++ S A+ AL++ RR +L W S
Sbjct: 89 IDLEACTDKGVVVLEGKGS-PVAPAELTWALVMAAQRRIPQ-YVASLKHGAWQQSGLKST 146
Query: 155 RGMRRC------RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR 208
+G LGI G + +A +F M+VL + E +
Sbjct: 147 TMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWG-RENSKERARADGFAV 205
Query: 209 MDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLL 268
++ + L SDV+S+H + DET II L +KP A VNT ++L+++ + L
Sbjct: 206 AESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTAL 265
Query: 269 IDGTLAGCALD--GAEGPQWMEAWVREMPNVLILP 301
G A+D E M N + P
Sbjct: 266 NRGRPGMAAIDVFETEPILQGHTL-LRMENCICTP 299
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Length = 333 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 9e-25
Identities = 50/214 (23%), Positives = 96/214 (44%), Gaps = 15/214 (7%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGS--VQP 152
+D A G+ + V +E +A+ + L++ L+R+ H A + W +
Sbjct: 78 IDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHY-ADKFIRRGEWESHAKIWT 136
Query: 153 LCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMD-- 210
+ + G +GI+G A +A+A R + F + + Y+ K + + +
Sbjct: 137 GFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWS-RHRK-----VNVEKELKAR 190
Query: 211 --TLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLL 268
+++LL SD++ L +T +T IIN E ++ ++ G +LVN G L+D+ AV + +
Sbjct: 191 YMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLE-GKYLVNIGRGALVDEKAVTEAI 249
Query: 269 IDGTLAGCALD-GAEGPQWMEAWVREMPNVLILP 301
G L G A D + P + ++ P
Sbjct: 250 KQGKLKGYATDVFEKEPVREHELFKYEWETVLTP 283
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 2e-24
Identities = 51/211 (24%), Positives = 89/211 (42%), Gaps = 10/211 (4%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLC 154
+D AA GL + V S +A+ + +L L+R + + W +V +
Sbjct: 100 IDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVP-GYNQVVKGEW--NVAGIA 156
Query: 155 RGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFD---VPEGKGKVTFPSAARRMDT 211
G +G VG + L R F ++LY D + K T A+ ++
Sbjct: 157 YRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKET---GAKFVED 213
Query: 212 LNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDG 271
LN++L DVI ++ +T++T + N E + +K G +VN +++ AV + G
Sbjct: 214 LNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESG 273
Query: 272 TLAGCALD-GAEGPQWMEAWVREMPNVLILP 301
+ G + D P + R MPN + P
Sbjct: 274 HIGGYSGDVWDPQPAPKDHPWRYMPNQAMTP 304
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 9e-24
Identities = 53/190 (27%), Positives = 81/190 (42%), Gaps = 24/190 (12%)
Query: 122 VMALLLGLLRRTHLLARHALSASG-W----LGSVQPLCRGMRRCRGLVLGIVGRSASARA 176
V+ LL LLR + +A + G GS + RG LGI+G
Sbjct: 110 VIGELLLLLR--GVPEANAKAHRGVGNKLAAGSFE--------ARGKKLGIIGYGHIGTQ 159
Query: 177 LATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII 236
L + S M V ++D+ A ++ L+DLL SDV+SLH T ++
Sbjct: 160 LGILAESLGMYVYFYDIENKLPL----GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMM 215
Query: 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD--GAEGPQWMEAWV--- 291
A+ + +KPG+ L+N ++D A+ L LAG A+D E + +
Sbjct: 216 GAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPL 275
Query: 292 REMPNVLILP 301
E NVL+ P
Sbjct: 276 AEFDNVLLTP 285
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Length = 416 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 3e-23
Identities = 52/190 (27%), Positives = 88/190 (46%), Gaps = 24/190 (12%)
Query: 122 VMALLLGLLRRTHLLARHALSASG-W----LGSVQPLCRGMRRCRGLVLGIVGRSASARA 176
V+ ++ L+R + R + +G W +GS + RG LGIVG
Sbjct: 121 VIGEIIMLMR--RIFPRSVSAHAGGWEKTAIGSRE--------VRGKTLGIVGYGNIGSQ 170
Query: 177 LATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII 236
+ + S M+V Y+D + + +L++LL SDV+SLH + T ++I
Sbjct: 171 VGNLAESLGMTVRYYDTSDKLQYGN----VKPAASLDELLKTSDVVSLHVPSSKSTSKLI 226
Query: 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD--GAEGPQWMEAWV--- 291
L+ +K GAFL+N +D A+ ++L +G LAG A+D E E +
Sbjct: 227 TEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPL 286
Query: 292 REMPNVLILP 301
+ + NV++ P
Sbjct: 287 QGLENVILTP 296
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 2e-22
Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 10/165 (6%)
Query: 119 ADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALA 178
A+ V+ +L L+R A + W V + + G + +G +
Sbjct: 124 AEHVVMTMLVLVRNFVP-AHEQIINHDW--EVAAIAKDAYDIEGKTIATIGAGRIGYRVL 180
Query: 179 TRSLSFKMSVLYFD----VPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQ 234
R + F L + +P+ + ARR++ + +L+A +D+++++ + T
Sbjct: 181 ERLVPFNPKELLYYDYQALPKDAEEKV---GARRVENIEELVAQADIVTVNAPLHAGTKG 237
Query: 235 IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD 279
+IN E L K GA+LVNT + V L G L G D
Sbjct: 238 LINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGD 282
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Length = 307 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 8e-22
Identities = 46/190 (24%), Positives = 84/190 (44%), Gaps = 20/190 (10%)
Query: 119 ADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALA 178
A+ + L+ + R+ A + W G+ G +GI+G +A
Sbjct: 104 AELAVGLMFSVARKIAF-ADRKMREGVWAKK---EAMGIE-LEGKTIGIIGFGRIGYQVA 158
Query: 179 TRSLSFKMSVLYFDVPEGKGKVTFPSAAR------RMDTLNDLLAASDVISLHCAVTDET 232
+ + M++L +D +P+ R + L LL SDV+++H + + T
Sbjct: 159 KIANALGMNILLYDP--------YPNEERAKEVNGKFVDLETLLKESDVVTIHVPLVEST 210
Query: 233 IQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD-GAEGPQWMEAWV 291
+IN E L+ +K A L+NT ++D A+ + L +G +AG LD E P + +
Sbjct: 211 YHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPL 270
Query: 292 REMPNVLILP 301
+ NV++ P
Sbjct: 271 TKFDNVVLTP 280
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313 | Back alignment and structure |
|---|
Score = 94.6 bits (236), Expect = 2e-21
Identities = 36/192 (18%), Positives = 78/192 (40%), Gaps = 23/192 (11%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGW---LGSVQ 151
+D+ A +++++ + + + + L++ R+ + + + + G
Sbjct: 82 IDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYT-SMALAKSGIFKKIEGL-- 138
Query: 152 PLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMD- 210
G +GIVG + + + M VL +D+ + A +++
Sbjct: 139 -------ELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDI------LDIREKAEKINA 185
Query: 211 ---TLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQL 267
+L +LL SDVISLH V+ + II+ + +K +VNT + ++ A+
Sbjct: 186 KAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDY 245
Query: 268 LIDGTLAGCALD 279
+ G + A D
Sbjct: 246 IKKGKVYAYATD 257
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Length = 335 | Back alignment and structure |
|---|
Score = 93.0 bits (232), Expect = 9e-21
Identities = 39/167 (23%), Positives = 64/167 (38%), Gaps = 19/167 (11%)
Query: 119 ADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALA 178
A+ +++ L R+ A ++ W G G LGI+G R +A
Sbjct: 127 AELTCGMIMCLARQIPQ-ATASMKDGKWERK---KFMGTE-LNGKTLGILGLGRIGREVA 181
Query: 179 TRSLSFKMSVLYFDVPEGKGKVTFPSAAR------RMDTLNDLLAASDVISLHCAVTDET 232
TR SF M + +D S + L ++ D I++H + T
Sbjct: 182 TRMQSFGMKTIGYDP--------IISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPST 233
Query: 233 IQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD 279
++N K G +VN ++D+ A+ + L G AG ALD
Sbjct: 234 TGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALD 280
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 2e-20
Identities = 71/295 (24%), Positives = 121/295 (41%), Gaps = 46/295 (15%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLC 154
VD A G+ +++ TS A+ +ALLL R+ A +L W S
Sbjct: 80 VDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPA-ADASLREHTWKRS---SF 135
Query: 155 RGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFD--VPEGKGKVTFPSAARRMD-- 210
G G +G+VG + +A R +F V+ +D V + A ++
Sbjct: 136 SGTE-IFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPAR--------AAQLGIE 186
Query: 211 --TLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLL 268
+L+DLLA +D IS+H T ET +I+ E L KPG +VN L+D+ A+ +
Sbjct: 187 LLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAI 246
Query: 269 IDGTLAGCALD--GAEGPQWMEAWVREMPNVLILPRSADYSEE----VWMEIRDKAISVL 322
G + LD E ++ + E+ V++ P + E ++ + L
Sbjct: 247 TGGHVRAAGLDVFATEPCT--DSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLAL 304
Query: 323 QTFFFDGVIPKNAISDTEGCEN----EIDDEIEQYNKLDKVSTLEGSVGGQLTDD 373
G +A+ N +++E+ + L V L G + G L+D+
Sbjct: 305 -----AGEFVPDAV-------NVGGGVVNEEVAPWLDL--VRKL-GVLAGVLSDE 344
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 2e-18
Identities = 41/212 (19%), Positives = 75/212 (35%), Gaps = 55/212 (25%)
Query: 95 VDSALAADLGLRLI--------HVDTSRAEE---------------IADTVMALLLGLLR 131
V+ +L + + + HVD + ++ + + V + LL L
Sbjct: 52 VNESLLSGTPINFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAE 111
Query: 132 RTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYF 191
R G+ R +GIVG L TR + + L
Sbjct: 112 RD-----------GFS------------LRDRTIGIVGVGNVGSRLQTRLEALGIRTLLC 148
Query: 192 DVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDE----TIQIINAECLQHIKPG 247
D P TL++L+ +DV++ H + + T+ + + ++ +KPG
Sbjct: 149 DPPRAA-----RGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPG 203
Query: 248 AFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD 279
A L+N ++D+ A+ L G LD
Sbjct: 204 AILINACRGPVVDNAALLARLNAGQPLSVVLD 235
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 6e-18
Identities = 63/288 (21%), Positives = 96/288 (33%), Gaps = 50/288 (17%)
Query: 33 LEQDSLAGVALVEHVPLGRLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSD 92
L+ L + ++ EA + + A A +L +
Sbjct: 22 LKAAHLPHLRILRADNQSDAEKLIGEAHILMAEPARAKPLLAKANKLS---WFQSTYAG- 77
Query: 93 RTVDSALAADL--GLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSV 150
VD L A +L +V +++ V LL L+R+ L W
Sbjct: 78 --VDVLLDARCRRDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQ-KQRLW---- 130
Query: 151 QPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVL----------YFDVPEGKGKV 200
Q + +G L I+G + + +A F M VL FD
Sbjct: 131 QS--HPYQGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFDQVYQ---- 184
Query: 201 TFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLD 260
+ LN +LA +DVI T ET + A +H KPGA L N G ++
Sbjct: 185 --------LPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAIN 236
Query: 261 DCAVKQLLIDGTLAGCALD-------GAEGPQWMEAWVREMPNVLILP 301
+ + L G L LD A+ P W PN++I P
Sbjct: 237 EGDLLTALRTGKLGMAVLDVFEQEPLPADSPLW------GQPNLIITP 278
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 1e-17
Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 17/127 (13%)
Query: 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMD----TLNDLL 216
G+VG L VL D P AR D +L LL
Sbjct: 115 AERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPR---------QAREPDGEFVSLERLL 165
Query: 217 AASDVISLHCAVTDE----TIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGT 272
A +DVISLH + + T +++ L ++PG +LVN ++D+ A+++LL G
Sbjct: 166 AEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGA 225
Query: 273 LAGCALD 279
ALD
Sbjct: 226 DLEVALD 232
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 2e-17
Identities = 52/281 (18%), Positives = 85/281 (30%), Gaps = 56/281 (19%)
Query: 46 HVPLGRLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLG-------SSDRTVDSA 98
H + G A L + P R + + LG S
Sbjct: 28 HARVREWKVGDNNPADYAL----VWQPPVEMLAGRRLKAVFVLGAGVDAILSKLNAHPEM 83
Query: 99 LAADLGL-RLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGM 157
L A + L RL DT ++ + ++ +L RR A W +P
Sbjct: 84 LDASIPLFRL--EDTGMGLQMQEYAVSQVLHWFRRFDDYQALKNQAL-W----KP--LPE 134
Query: 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVL----------YFDVPEGKGKVTFPSAAR 207
+GI+G +A ++ + + G
Sbjct: 135 YTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVG----------- 183
Query: 208 RMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQL 267
+ L L + V+ T +T+ IIN+E L + GA+++N + + +
Sbjct: 184 -REELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAA 242
Query: 268 LIDGTLAGCALD-------GAEGPQWMEAWVREMPNVLILP 301
L G L G LD E P W P V + P
Sbjct: 243 LDSGKLKGAMLDVFSQEPLPQESPLW------RHPRVAMTP 277
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 6e-06
Identities = 82/509 (16%), Positives = 151/509 (29%), Gaps = 156/509 (30%)
Query: 210 DTLNDLLAASDVISLHCA-VTDETIQIINAECLQHI--KPGAFLVNTGSSQLLDDCAVKQ 266
D L+ A V + C V D I++ E + HI A +G+ +L KQ
Sbjct: 20 DILSVFEDAF-VDNFDCKDVQDMPKSILSKEEIDHIIMSKDA---VSGTLRLFWTLLSKQ 75
Query: 267 LLIDGTLAGCALDGAEGP--QW-MEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQ 323
+ ++ ++ M E R +++E RD+ + Q
Sbjct: 76 ----EEMVQKFVEEVLRINYKFLMSPIKTE-------QRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 324 TFFFDGVIPKNAISDTEGCENEIDDEIEQYNKLDKVSTLEGSVG-GQ--LTDDIQVSPED 380
F K +S + ++ + + V ++G +G G+ + + V
Sbjct: 125 VF------AKYNVSRLQ-PYLKLRQALLELRPAKNV-LIDGVLGSGKTWVA--LDVCLSY 174
Query: 381 SLKK----GISW----SRDSPS----QLQ------GSGFSQNSANTKSDGRRSRSGKKAK 422
++ I W + +SP LQ ++ S ++ + R S +
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 423 KRHARQKSLQKP----DD---PSALEK----------------------ESTSHKEDDTA 453
+R + K + + A +T+H D
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 454 MSG--TDQASSRCA-----SPEELRSRKT---P--IESIQESTSKKLSR-------SSKK 494
D+ S P++L P + I ES L+ + K
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 495 LS---EVSGETLKDGYVVALYARD----RPALHISRQRHKGGGWILETM-SNVTKRDPA- 545
L+ E S L+ ++ P+ HI +L + +V K D
Sbjct: 355 LTTIIESSLNVLEPAEYRKMF-DRLSVFPPSAHIPTI-------LLSLIWFDVIKSDVMV 406
Query: 546 -AQFLICKS---KD----TIGLRSFTAGGKLLQINRRMEFVFASHSFDAWESWAIEGPLE 597
L S K TI + S L++ ++E +A H
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSI-----YLELKVKLENEYALHR-------------- 447
Query: 598 ECRLVNCRNPLVFFFF----------YFF 616
+V+ N F YF+
Sbjct: 448 --SIVDHYNIPKTFDSDDLIPPYLDQYFY 474
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 1e-05
Identities = 72/407 (17%), Positives = 131/407 (32%), Gaps = 131/407 (32%)
Query: 73 RAAQRRL---RPYQ---LILCLGSSD-----RTVDSALAADLGLR-LIHVDTSRAEEIAD 120
+A RRL +PY+ L+L + + A +L + L+ T+R +++ D
Sbjct: 231 QAELRRLLKSKPYENCLLVL-----LNVQNAKAWN---AFNLSCKILL---TTRFKQVTD 279
Query: 121 TVMALLLGLLRRTHLLARH-----------ALSASGWLG-SVQPLCRGMRRCRGLVLGIV 168
+ A TH+ H +L +L Q L R + L I+
Sbjct: 280 FLSA-----ATTTHISLDHHSMTLTPDEVKSLLLK-YLDCRPQDLPREVLTTNPRRLSII 333
Query: 169 GRSASARALATR------------SLSFKMSVLYFDVPEGKGK----VTFPSAAR----- 207
S R + + S+ + E + FP +A
Sbjct: 334 A--ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 208 ------------RMDTLNDLLAASDV--------ISLHCAVTDETIQIINAECLQHIKPG 247
M +N L S V IS+ + +++ N L H
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL-HRS-- 448
Query: 248 AFLV---NTGSSQLLDDCAVKQLLIDGTLA---GCALDGAEGPQWMEAWVREMPNVLILP 301
+V N + DD L D G L E P+ M V +
Sbjct: 449 --IVDHYNIPKTFDSDDLIPPYL--DQYFYSHIGHHLKNIEHPERMT----LFRMVFL-- 498
Query: 302 RSADYSEEVWME--IRDKAI------SVLQTFFFDGVIPKNAISDTEGCENEIDDEIEQY 353
D+ ++E IR + S+L T K I D + + + I +
Sbjct: 499 ---DFR---FLEQKIRHDSTAWNASGSILNT-LQQLKFYKPYICDNDPKYERLVNAILDF 551
Query: 354 NKLDKVSTLEGSVGGQLTDDIQVS---PEDSLKKGISWSRDSPSQLQ 397
L K+ E + + TD ++++ ++++ + ++ Q+Q
Sbjct: 552 --LPKIE--ENLICSKYTDLLRIALMAEDEAIFE------EAHKQVQ 588
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 6e-05
Identities = 11/99 (11%), Positives = 25/99 (25%), Gaps = 7/99 (7%)
Query: 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR--RMDTLNDLLAA 218
G + ++G ++A + + V + L
Sbjct: 154 HGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRD 213
Query: 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQ 257
DV ++ A L + F+++ S
Sbjct: 214 VDVCINTI-----PALVVTANVLAEMPSHTFVIDLASKP 247
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 620 | |||
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 100.0 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 100.0 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 100.0 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 100.0 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 100.0 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 100.0 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 100.0 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 100.0 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 100.0 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 100.0 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 100.0 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 100.0 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 100.0 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 100.0 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 100.0 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 100.0 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 100.0 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 100.0 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 100.0 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 100.0 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 100.0 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 100.0 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 100.0 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 100.0 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 100.0 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 100.0 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 100.0 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 100.0 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 100.0 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 100.0 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 100.0 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 100.0 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 100.0 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 100.0 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 100.0 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 99.97 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 99.97 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 99.93 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 99.87 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 99.86 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 99.85 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 99.74 | |
| 1gtm_A | 419 | Glutamate dehydrogenase; oxidoreductase, NAD, NADP | 99.73 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 99.65 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 99.62 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 99.58 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 99.56 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 99.55 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 99.51 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 99.38 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 99.35 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.33 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.3 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 99.28 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 99.24 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 99.23 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 99.21 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 99.21 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 99.19 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 99.18 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 99.18 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 99.16 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.15 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 99.12 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.12 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.1 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.07 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 99.05 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 99.04 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 99.02 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 99.01 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.01 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.01 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 99.0 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 99.0 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 98.99 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 98.99 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 98.97 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.96 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 98.94 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 98.93 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 98.93 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.92 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.85 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 98.36 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 98.85 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 98.84 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 98.83 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 98.81 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 98.8 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 98.8 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 98.79 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 98.77 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 98.71 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 98.69 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 98.65 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 98.63 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 98.63 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 98.61 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 98.59 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 98.59 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 98.58 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 98.57 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.55 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 98.54 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 98.52 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 98.5 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 98.49 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 98.47 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 98.46 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 98.44 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 98.41 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 98.41 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 98.4 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 98.39 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 98.39 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 98.38 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 98.37 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 98.35 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 98.32 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 98.3 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 98.29 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 98.29 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 98.27 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 98.26 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 98.25 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 98.24 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 98.24 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 98.23 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 98.22 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 98.22 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 98.21 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 98.2 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 98.2 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 98.19 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 98.18 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 98.18 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 98.18 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 98.13 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 98.13 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 98.11 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 98.11 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 98.11 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 98.1 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 98.09 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 98.09 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 98.08 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 98.07 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 98.05 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 98.0 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.97 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.93 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 97.89 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 97.88 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 97.88 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 97.82 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 97.76 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 97.76 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 97.73 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 97.68 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 97.66 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 97.64 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 97.62 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 97.61 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 97.6 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 97.6 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.58 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 97.57 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.57 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 97.54 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 97.53 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 97.51 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 97.5 | |
| 2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 97.48 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 97.47 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 97.42 | |
| 4b4u_A | 303 | Bifunctional protein fold; oxidoreductase; HET: NA | 97.41 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 97.38 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.36 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 97.35 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 97.35 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 97.34 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.32 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 97.31 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 97.25 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 97.24 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 97.24 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 97.23 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 97.22 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.2 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.16 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 97.16 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 97.13 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 97.13 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 97.12 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 97.12 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 97.11 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.1 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 97.08 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.07 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.07 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 97.06 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.05 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 97.04 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 97.02 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 97.01 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 96.97 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 96.97 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 96.94 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 96.94 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.92 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 96.92 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 96.91 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 96.89 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 96.89 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 96.89 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 96.86 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 96.84 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 96.82 | |
| 2dvm_A | 439 | Malic enzyme, 439AA long hypothetical malate oxido | 96.8 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 96.76 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 96.76 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 96.76 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 96.75 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 96.71 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 96.69 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 96.66 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.63 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 96.62 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 96.58 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 96.58 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 96.57 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 96.55 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 96.54 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 96.52 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 96.49 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 96.47 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 96.47 | |
| 2i6u_A | 307 | Otcase, ornithine carbamoyltransferase; X-RAY crys | 96.43 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 96.43 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 96.42 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 96.4 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 96.39 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 96.38 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 96.38 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 96.38 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 96.36 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 96.36 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 96.36 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 96.36 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 96.35 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 96.31 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 96.28 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 96.28 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 96.28 | |
| 3r7f_A | 304 | Aspartate carbamoyltransferase; aspartate transcar | 96.27 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 96.26 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 96.25 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 96.24 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 96.24 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 96.23 | |
| 2ef0_A | 301 | Ornithine carbamoyltransferase; TTHA1199, thermus | 96.23 | |
| 4f2g_A | 309 | Otcase 1, ornithine carbamoyltransferase 1; struct | 96.21 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 96.2 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 96.19 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 96.18 | |
| 1pg5_A | 299 | Aspartate carbamoyltransferase; 2.60A {Sulfolobus | 96.18 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 96.18 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 96.17 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 96.17 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.15 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 96.11 | |
| 1pvv_A | 315 | Otcase, ornithine carbamoyltransferase; dodecamer; | 96.09 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 96.05 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 96.03 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 96.01 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 96.0 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 96.0 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 95.99 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 95.99 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 95.99 | |
| 1vlv_A | 325 | Otcase, ornithine carbamoyltransferase; TM1097, st | 95.98 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 95.89 | |
| 1oth_A | 321 | Protein (ornithine transcarbamoylase); transferase | 95.85 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 95.84 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 95.83 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 95.76 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 95.74 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 95.72 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 95.7 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 95.68 | |
| 4ep1_A | 340 | Otcase, ornithine carbamoyltransferase; structural | 95.68 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 95.67 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 95.66 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 95.65 | |
| 2we8_A | 386 | Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc | 95.65 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 95.65 | |
| 3d6n_B | 291 | Aspartate carbamoyltransferase; reactor, chamber, | 95.65 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 95.63 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 95.62 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 95.6 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 95.55 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 95.54 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 95.54 | |
| 1ml4_A | 308 | Aspartate transcarbamoylase; beta pleated sheet, p | 95.53 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 95.51 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 95.51 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 95.49 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 95.46 | |
| 4amu_A | 365 | Ornithine carbamoyltransferase, catabolic; ornithi | 95.45 | |
| 3tpf_A | 307 | Otcase, ornithine carbamoyltransferase; structural | 95.42 | |
| 1dxh_A | 335 | Ornithine carbamoyltransferase; transcarbamylase; | 95.4 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 95.36 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 95.35 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 95.33 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 95.33 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 95.32 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 95.31 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 95.29 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 95.28 | |
| 2w37_A | 359 | Ornithine carbamoyltransferase, catabolic; transca | 95.28 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 95.26 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 95.25 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 95.25 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 95.25 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 95.22 | |
| 1duv_G | 333 | Octase-1, ornithine transcarbamoylase; enzyme-inhi | 95.22 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 95.19 | |
| 3csu_A | 310 | Protein (aspartate carbamoyltransferase); transfer | 95.17 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 95.17 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 95.16 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 95.16 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 95.15 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 95.15 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 95.13 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 95.11 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 95.11 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 95.09 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 95.08 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 95.07 | |
| 3gd5_A | 323 | Otcase, ornithine carbamoyltransferase; structural | 95.06 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 95.05 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 95.05 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 95.04 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 95.03 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 95.02 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 95.02 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 95.01 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 95.01 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 94.99 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 94.97 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 94.97 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 94.89 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 94.89 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 94.88 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 94.86 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 94.86 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 94.84 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 94.83 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 94.83 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 94.82 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 94.8 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 94.79 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 94.78 | |
| 3on5_A | 362 | BH1974 protein; structural genomics, joint center | 94.77 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 94.77 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 94.73 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 94.73 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 94.72 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 94.71 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 94.68 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 94.67 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 94.67 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 94.64 | |
| 3grf_A | 328 | Ornithine carbamoyltransferase; ornithine transcar | 94.61 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 94.61 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 94.59 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 94.59 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 94.59 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 94.54 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 94.54 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 94.52 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 94.49 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 94.49 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 94.46 | |
| 3sds_A | 353 | Ornithine carbamoyltransferase, mitochondrial; str | 94.43 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 94.43 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 94.39 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 94.38 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 94.37 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 94.37 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 94.37 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 94.35 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 94.33 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 94.29 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 94.23 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 94.23 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 94.2 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 94.19 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 94.19 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 94.17 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 94.17 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 94.14 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 94.12 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 94.11 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 94.11 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 94.11 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 94.1 | |
| 4ekn_B | 306 | Aspartate carbamoyltransferase; atcase, aspartate | 94.09 | |
| 4a8t_A | 339 | Putrescine carbamoyltransferase; trabnsferase PALO | 94.07 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 94.05 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 94.04 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 94.02 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 94.01 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 93.98 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 93.95 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 93.92 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 93.91 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 93.91 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 93.9 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 93.88 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 93.83 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 93.83 | |
| 4h31_A | 358 | Otcase, ornithine carbamoyltransferase; structural | 93.82 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 93.82 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 93.82 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 93.8 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 93.79 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 93.75 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 93.73 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 93.72 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 93.71 | |
| 3aog_A | 440 | Glutamate dehydrogenase; NAD(H), oxidoreducta; HET | 93.71 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 93.67 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 93.67 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 93.65 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 93.65 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 93.6 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 93.59 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 93.57 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 93.55 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 93.55 | |
| 4a8p_A | 355 | Putrescine carbamoyltransferase; ornithine agmatin | 93.54 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 93.52 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 93.52 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 93.52 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 93.49 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 93.46 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 93.43 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 93.43 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 93.41 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 93.4 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 93.38 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 93.38 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 93.38 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 93.37 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 93.37 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 93.36 | |
| 2tmg_A | 415 | Protein (glutamate dehydrogenase); metabolic role, | 93.36 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 93.33 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 93.32 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 93.3 | |
| 1js1_X | 324 | Transcarbamylase; alpha/beta topology, two domains | 93.29 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 93.29 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 93.29 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 93.26 | |
| 4fcc_A | 450 | Glutamate dehydrogenase; protein complex, rossmann | 93.26 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 93.25 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 93.25 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 93.24 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 93.13 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 93.05 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 92.98 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 92.97 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 92.97 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 92.96 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 92.87 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 92.86 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 92.82 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 92.8 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 92.79 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 92.78 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 92.72 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 92.68 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 92.63 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 92.63 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 92.63 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 92.61 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 92.59 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 92.58 | |
| 2csu_A | 457 | 457AA long hypothetical protein; structural genomi | 92.55 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 92.54 | |
| 1v9l_A | 421 | Glutamate dehydrogenase; protein-NAD complex, oxid | 92.53 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 92.5 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 92.49 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 92.49 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 92.45 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 92.4 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 92.4 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 92.4 |
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-63 Score=522.43 Aligned_cols=314 Identities=21% Similarity=0.258 Sum_probs=274.3
Q ss_pred CCCCEEEEeCCCCCChhHHhhccCCceEEecCC-CCCcc----cccccceEEEEecCCCCCHHHHhcC-CCCeEEEEecc
Q 007040 17 TPLPSVVALNCIEDCVLEQDSLAGVALVEHVPL-GRLAD----GKIEAAAAVLLHSLAYLPRAAQRRL-RPYQLILCLGS 90 (620)
Q Consensus 17 ~~kPkVvvL~~~ed~~~~~~~L~~l~~v~~~~~-~~l~e----~~l~~AdaVlv~s~~~l~~e~l~~l-p~LK~I~~~ga 90 (620)
+++|+|++...+.+ ...+.|+...++..... ..++. +.++++|+++++...++++++++++ |+||||++.|+
T Consensus 26 ~~~~kvlv~~~~~~--~~~~~l~~~~~v~~~~~~~~~~~~~l~~~~~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~~~ 103 (345)
T 4g2n_A 26 HPIQKAFLCRRFTP--AIEAELRQRFDLEVNLEDTVLTPSGIASRAHGAEVLFVTATEAITAEVIRKLQPGLKTIATLSV 103 (345)
T ss_dssp -CCCEEEESSCCCH--HHHHHHHHHSEEEECTTCCCCCHHHHHHHTTTCSEEEECTTSCBCHHHHHHTTTTCCEEEESSS
T ss_pred CCCCEEEEeCCCCH--HHHHHHHccCCEEEecCCCCCCHHHHHHHhcCCeEEEEeCCCCCCHHHHHhhcCCceEEEEcCC
Confidence 46899999876533 33455665567765432 22222 4578999999987778999999998 79999999999
Q ss_pred cCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeC
Q 007040 91 SDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGR 170 (620)
Q Consensus 91 G~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGl 170 (620)
|+|+||+++|.++||.|+|+||+++++||||++++||+++|+++.+++. .+++.|...... .....+|+|++|||||+
T Consensus 104 G~D~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~-~r~g~W~~~~~~-~~~g~~l~gktvGIIGl 181 (345)
T 4g2n_A 104 GYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRM-VRSGSWPGWGPT-QLLGMGLTGRRLGIFGM 181 (345)
T ss_dssp CCTTBCHHHHHHTTCEEECCCSCCHHHHHHHHHHHHHHHHHTHHHHHHH-HHTTCCCCCCTT-TTCBCCCTTCEEEEESC
T ss_pred cccccCHHHHHhCCEEEEECCcccchHHHHHHHHHHHHHHhCHHHHHHH-HHcCCCcccCcc-cccccccCCCEEEEEEe
Confidence 9999999999999999999999999999999999999999999999987 588999743211 12246899999999999
Q ss_pred ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEE
Q 007040 171 SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFL 250 (620)
Q Consensus 171 G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiL 250 (620)
|+||+++|++|++|||+|++||++...... ..+....+++++++++||+|++|||+|++|+++|+++.|+.||+|++|
T Consensus 182 G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~--~~g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gail 259 (345)
T 4g2n_A 182 GRIGRAIATRARGFGLAIHYHNRTRLSHAL--EEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVV 259 (345)
T ss_dssp SHHHHHHHHHHHTTTCEEEEECSSCCCHHH--HTTCEECSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEE
T ss_pred ChhHHHHHHHHHHCCCEEEEECCCCcchhh--hcCCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEE
Confidence 999999999999999999999998744321 125555579999999999999999999999999999999999999999
Q ss_pred EEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCC
Q 007040 251 VNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGV 330 (620)
Q Consensus 251 INvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~ 330 (620)
||+|||++||++||+++|++|+|+||+||||++||+.++|||++||||+|||+|++|.++..++.+.+++||.+|+ +|+
T Consensus 260 IN~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~l-~g~ 338 (345)
T 4g2n_A 260 INISRGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHETRDAMGWLLIQGIEALN-QSD 338 (345)
T ss_dssp EECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHH-TTC
T ss_pred EECCCCchhCHHHHHHHHHhCCceEEEecCCCCCCCCCchHHhCCCEEEcCccCcCCHHHHHHHHHHHHHHHHHHH-cCC
Confidence 9999999999999999999999999999999986689999999999999999999999999999999999999996 899
Q ss_pred CCCcccc
Q 007040 331 IPKNAIS 337 (620)
Q Consensus 331 ~p~nvVn 337 (620)
+|.|+|+
T Consensus 339 ~~~~~V~ 345 (345)
T 4g2n_A 339 VPDNLIS 345 (345)
T ss_dssp CCTTBCC
T ss_pred CCCCCcC
Confidence 8999885
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-64 Score=527.73 Aligned_cols=299 Identities=22% Similarity=0.348 Sum_probs=259.7
Q ss_pred ChhHHhhccCCc-eEEecCCCCCcccccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCCccchHHHHhcCcEEEE
Q 007040 31 CVLEQDSLAGVA-LVEHVPLGRLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIH 109 (620)
Q Consensus 31 ~~~~~~~L~~l~-~v~~~~~~~l~e~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtN 109 (620)
.++..+.|+++. ++...+...++++.+++||+++++..+++++++++++|+||+|+++|+|+||||+++|+++||.|+|
T Consensus 13 ~p~~~e~l~~~~~~~~~~~~~~~~~~~l~~ad~i~v~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n 92 (334)
T 3kb6_A 13 VPFYQEALKDLSLKIYTTDVSKVPENELKKAELISVFVYDKLTEELLSKMPRLKLIHTRSVGFDHIDLDYCKKKGILVTH 92 (334)
T ss_dssp HHHHHHHTTTSCEEECSSCGGGSCHHHHHHCSEEEECTTSCBCHHHHHTCTTCCEEEESSSCCTTBCHHHHHHHTCEEEC
T ss_pred CHHHHHHHHhCCcEEEeCCcccCCHHHhcCCCEEEEeCCCCCCHHHHhcCCCCcEEEECCcccchhcHHHHHHCCCEEEE
Confidence 355567788763 2222233445566788999999998889999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEE
Q 007040 110 VDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVL 189 (620)
Q Consensus 110 tpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~ 189 (620)
+||+++.+||||+++++|++.|++..+... .+.+.|..... ...++++|+||||||+|+||+.+|+++++|||+|+
T Consensus 93 ~p~~~~~~vAE~~~~l~L~~~r~~~~~~~~-~~~~~~~~~~~---~~~~~l~g~tvGIiG~G~IG~~va~~~~~fg~~v~ 168 (334)
T 3kb6_A 93 IPAYSPESVAEHTFAMILTLVKRLKRIEDR-VKKLNFSQDSE---ILARELNRLTLGVIGTGRIGSRVAMYGLAFGMKVL 168 (334)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHTTHHHHHHH-HHTTCCCCCGG---GCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEE
T ss_pred CCCcCcHHHHHHHHHHHHHHhhcccccccc-ccccccccccc---cccceecCcEEEEECcchHHHHHHHhhcccCceee
Confidence 999999999999999999999999998886 57778764322 23468999999999999999999999999999999
Q ss_pred EECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHH
Q 007040 190 YFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269 (620)
Q Consensus 190 ~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~ 269 (620)
+||++..... ...++ ...+|++++++||+|++|||+|++|+||||++.|++||+|++|||+|||++||++||++||+
T Consensus 169 ~~d~~~~~~~--~~~~~-~~~~l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~ 245 (334)
T 3kb6_A 169 CYDVVKREDL--KEKGC-VYTSLDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQ 245 (334)
T ss_dssp EECSSCCHHH--HHTTC-EECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred ecCCccchhh--hhcCc-eecCHHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCccccccHHHHHHHHH
Confidence 9998764322 12223 34699999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEeecCCC-CCCCCc---------------cccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 007040 270 DGTLAGCALDGAEG-PQWMEA---------------WVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPK 333 (620)
Q Consensus 270 ~G~I~GAaLDV~E~-P~~~~s---------------pL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~p~ 333 (620)
+|+|+||+||||++ |++.++ |||.+|||++|||+||+|.+++.++.+.+++||.+|+ +|++|.
T Consensus 246 ~g~i~gA~LDV~~~EPl~~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~T~ea~~~~~~~~~~ni~~~l-~Ge~~~ 324 (334)
T 3kb6_A 246 RGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVIITPHIAYYTDKSLERIREETVKVVKAFV-KGDLEQ 324 (334)
T ss_dssp TTCEEEEEESCCTTHHHHHTTGGGGTCCCHHHHHHHHHHTSTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHH-HTCGGG
T ss_pred hCCceEEEEeCCCCCCCcccccccccccccccccchhhccCCCEEECCchhhChHHHHHHHHHHHHHHHHHHH-cCCCCc
Confidence 99999999999997 544333 6899999999999999999999999999999999997 898776
Q ss_pred cccc
Q 007040 334 NAIS 337 (620)
Q Consensus 334 nvVn 337 (620)
..+|
T Consensus 325 ~~~n 328 (334)
T 3kb6_A 325 IKGN 328 (334)
T ss_dssp GGGG
T ss_pred CCCC
Confidence 5443
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-61 Score=506.40 Aligned_cols=314 Identities=22% Similarity=0.249 Sum_probs=274.0
Q ss_pred CCEEEEeCCCCCChhHHhhccCCceEEecCCC-CCcc----cccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCC
Q 007040 19 LPSVVALNCIEDCVLEQDSLAGVALVEHVPLG-RLAD----GKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDR 93 (620)
Q Consensus 19 kPkVvvL~~~ed~~~~~~~L~~l~~v~~~~~~-~l~e----~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D 93 (620)
+|+|+++..+. +...+.|+...++...+.. .++. +.++++|++++.....+++++++++|+||||++.|+|+|
T Consensus 2 ~~kvlv~~~~~--~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~i~~~~l~~~~~Lk~I~~~~~G~d 79 (330)
T 4e5n_A 2 LPKLVITHRVH--EEILQLLAPHCELITNQTDSTLTREEILRRCRDAQAMMAFMPDRVDADFLQACPELRVIGCALKGFD 79 (330)
T ss_dssp CCEEEECSCCC--HHHHHHHTTTCEEECCCSSSCCCHHHHHHHHTTCSEEEECTTCCBCHHHHHHCTTCCEEEESSSCCT
T ss_pred CCEEEEecCCC--HHHHHHHHhCCeEEEecCCCCCCHHHHHHHhCCCeEEEEeCCCCCCHHHHhhCCCCcEEEECCCccc
Confidence 68899887643 3456677777777654322 2222 457889999997777899999999999999999999999
Q ss_pred ccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChh
Q 007040 94 TVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSAS 173 (620)
Q Consensus 94 ~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~I 173 (620)
+||+++|.++||.|+|+|++++.+||||+++++|+++|+++.+++. .+++.|.... + .....+|+|++|||||+|+|
T Consensus 80 ~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~-~~~g~w~~~~-~-~~~~~~l~g~tvGIIG~G~I 156 (330)
T 4e5n_A 80 NFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAF-VRSGKFRGWQ-P-RFYGTGLDNATVGFLGMGAI 156 (330)
T ss_dssp TBCHHHHHHTTCEEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHH-HHTTCCCSCC-S-CCCCCCSTTCEEEEECCSHH
T ss_pred ccCHHHHHhcCcEEEeCCCCCchHHHHHHHHHHHHHHhChHHHHHH-HHhCCccccC-c-cccCCccCCCEEEEEeeCHH
Confidence 9999999999999999999999999999999999999999999887 5888886321 1 12246899999999999999
Q ss_pred hHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEc
Q 007040 174 ARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNT 253 (620)
Q Consensus 174 G~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINv 253 (620)
|+.+|++|++|||+|++||++..........++.. .++++++++||+|++|||+|++|+++|+++.|+.||+|++|||+
T Consensus 157 G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~ 235 (330)
T 4e5n_A 157 GLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQ-VACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNP 235 (330)
T ss_dssp HHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTEEE-CCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEEC
T ss_pred HHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCcee-CCHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEEC
Confidence 99999999999999999999874332222234433 48999999999999999999999999999999999999999999
Q ss_pred CCChhhcHHHHHHHHHcCCcceeEeecCCC--------CCCCCccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHH
Q 007040 254 GSSQLLDDCAVKQLLIDGTLAGCALDGAEG--------PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTF 325 (620)
Q Consensus 254 gRG~vVDe~AL~~AL~~G~I~GAaLDV~E~--------P~~~~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~ 325 (620)
|||+++|++||+++|++|+|+||+||||++ |++.++|||++||||+|||+||+|.++..++.+.+++||.+|
T Consensus 236 arg~~vd~~aL~~aL~~g~i~gA~lDV~~~E~~~~~~~Pl~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~ 315 (330)
T 4e5n_A 236 CRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQA 315 (330)
T ss_dssp SCGGGBCHHHHHHHHHHTSEEEEEESCCGGGCTTCTTCCSSCCHHHHTCSSEEECSSCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhCHHHHHHHHHhCCccEEEecccccccccccCCCCCCCchHHcCCCEEECCcCCCChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999985 447899999999999999999999999999999999999999
Q ss_pred HHcCCCCCccccCC
Q 007040 326 FFDGVIPKNAISDT 339 (620)
Q Consensus 326 L~~G~~p~nvVn~~ 339 (620)
+ +|++|.|+||+.
T Consensus 316 ~-~g~~~~~~vn~~ 328 (330)
T 4e5n_A 316 L-AGERPINAVNRL 328 (330)
T ss_dssp H-TTSCCTTBSSCC
T ss_pred H-cCCCCCCccCCC
Confidence 6 899999999974
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-61 Score=511.30 Aligned_cols=310 Identities=24% Similarity=0.296 Sum_probs=239.8
Q ss_pred CCCCCEEEEeCCCCCChhHHhhccCCceEEecCCC----CCcccccccceEEEEecCCCCCHHHHhcCCCCeEEEEeccc
Q 007040 16 PTPLPSVVALNCIEDCVLEQDSLAGVALVEHVPLG----RLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSS 91 (620)
Q Consensus 16 ~~~kPkVvvL~~~ed~~~~~~~L~~l~~v~~~~~~----~l~e~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG 91 (620)
.|++|+|+++..+. +...+.|+..+++..+... ++. +.++++|++++++.+++++++++++|+||||++.|+|
T Consensus 27 ~~~~~~vl~~~~~~--~~~~~~L~~~~~v~~~~~~~~~~~~~-~~~~~~d~li~~~~~~i~~~~l~~~p~Lk~I~~~g~G 103 (340)
T 4dgs_A 27 RNVKPDLLLVEPMM--PFVMDELQRNYSVHRLYQAADRPALE-AALPSIRAVATGGGAGLSNEWMEKLPSLGIIAINGVG 103 (340)
T ss_dssp ------CEECSCCC--HHHHHTHHHHSCCEETTCGGGHHHHH-HHGGGCCEEEEETTTCBCHHHHHHCSSCCEEEEESSC
T ss_pred CCCCCEEEEECCCC--HHHHHHHhcCCcEEEeCCCCCHHHHH-HHhCCcEEEEEcCCCCCCHHHHhhCCCCEEEEECCCC
Confidence 35789999987653 3334455554555544211 111 2347899999988788999999999999999999999
Q ss_pred CCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCC
Q 007040 92 DRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRS 171 (620)
Q Consensus 92 ~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG 171 (620)
+|+||+++|+++||.|+|+||+++++||||++++||+++|+++.+++. .+++.|..... .....+|+|++|||||+|
T Consensus 104 ~d~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~-~~~g~W~~~~~--~~~~~~l~gktiGIIGlG 180 (340)
T 4dgs_A 104 TDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRL-VREGRWAAGEQ--LPLGHSPKGKRIGVLGLG 180 (340)
T ss_dssp CTTBCHHHHHHTTCEEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHH-HHTTCC--------CCCCCCTTCEEEEECCS
T ss_pred ccccCHHHHHhCCEEEEECCCCCcchHHHHHHHHHHHHHhChHHHHHH-HhcCCcccccC--cCccccccCCEEEEECCC
Confidence 999999999999999999999999999999999999999999999987 58999975310 012368999999999999
Q ss_pred hhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEE
Q 007040 172 ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLV 251 (620)
Q Consensus 172 ~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLI 251 (620)
+||+++|++|++|||+|++||++..... +.....++++++++||+|++|+|++++|+++|+++.|+.||+|++||
T Consensus 181 ~IG~~vA~~l~~~G~~V~~~dr~~~~~~-----~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailI 255 (340)
T 4dgs_A 181 QIGRALASRAEAFGMSVRYWNRSTLSGV-----DWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVV 255 (340)
T ss_dssp HHHHHHHHHHHTTTCEEEEECSSCCTTS-----CCEECSSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCccccc-----CceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEE
Confidence 9999999999999999999999875422 23445799999999999999999999999999999999999999999
Q ss_pred EcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCC
Q 007040 252 NTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVI 331 (620)
Q Consensus 252 NvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~ 331 (620)
|++||+++|++||+++|++|+|+||+||||++||.+.+|||++|||++|||+|++|.++..++.+.+++||.+|+ +|++
T Consensus 256 N~aRG~vvde~aL~~aL~~g~i~gA~LDVf~~EP~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~nl~~~~-~g~~ 334 (340)
T 4dgs_A 256 NVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLMPHQGSATVETRMAMGKLVLANLAAHF-AGEK 334 (340)
T ss_dssp ECSCC--------------CCSSEEEESCCSSSSSCCSHHHHSSSEEECSSCSSCCHHHHHHHHHHHHHHHHHHH-TTSC
T ss_pred ECCCCcccCHHHHHHHHHcCCceEEEeCCcCCCCCCccchhhCCCEEEcCcCCcCCHHHHHHHHHHHHHHHHHHH-cCCC
Confidence 999999999999999999999999999999986666679999999999999999999999999999999999997 8999
Q ss_pred CCcccc
Q 007040 332 PKNAIS 337 (620)
Q Consensus 332 p~nvVn 337 (620)
|.|.||
T Consensus 335 ~~~~Vn 340 (340)
T 4dgs_A 335 APNTVN 340 (340)
T ss_dssp CTTBC-
T ss_pred CCCCcC
Confidence 999987
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-61 Score=507.30 Aligned_cols=311 Identities=17% Similarity=0.206 Sum_probs=263.2
Q ss_pred EEEEeCCCCCChhHHhhccCCc-eEEecCCCCCcccccccceEEEEecCCCCCHHHH-hcCCCCeEEEEecccCCccchH
Q 007040 21 SVVALNCIEDCVLEQDSLAGVA-LVEHVPLGRLADGKIEAAAAVLLHSLAYLPRAAQ-RRLRPYQLILCLGSSDRTVDSA 98 (620)
Q Consensus 21 kVvvL~~~ed~~~~~~~L~~l~-~v~~~~~~~l~e~~l~~AdaVlv~s~~~l~~e~l-~~lp~LK~I~~~gaG~D~VD~~ 98 (620)
+|++...+.+ ...+.|+... ++......+..++.+.++|+++++.. .+ ++++ +++|+||||++.|+|+|+||++
T Consensus 3 kil~~~~~~~--~~~~~L~~~~~~~~~~~~~~~~~~~~~~ad~l~~~~~-~~-~~~l~~~~~~Lk~I~~~~~G~d~id~~ 78 (324)
T 3evt_A 3 LVLMAQATKP--EQLQQLQTTYPDWTFKDAAAVTAADYDQIEVMYGNHP-LL-KTILARPTNQLKFVQVISAGVDYLPLK 78 (324)
T ss_dssp EEEECSCCCH--HHHHHHHHHCTTCEEEETTSCCTTTGGGEEEEESCCT-HH-HHHHHSTTCCCCEEECSSSCCTTSCHH
T ss_pred EEEEecCCCH--HHHHHHHhhCCCeEEecCCccChHHhCCcEEEEECCc-Ch-HHHHHhhCCCceEEEECCccccccCHH
Confidence 6777765433 2333444321 22222333455567889998887754 46 8888 7899999999999999999999
Q ss_pred HHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHH-HHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHH
Q 007040 99 LAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLL-ARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARAL 177 (620)
Q Consensus 99 aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~-~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~v 177 (620)
+|.++||.|+|+||+++.+||||+++++|+++|+++.+ .+. .+++.|.... ...+++|++|||||+|.||+++
T Consensus 79 ~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~-~~~~~W~~~~-----~~~~l~gktvGIiGlG~IG~~v 152 (324)
T 3evt_A 79 ALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQ-RGARQWALPM-----TTSTLTGQQLLIYGTGQIGQSL 152 (324)
T ss_dssp HHHHTTCEEECCTTHHHHHHHHHHHHHHHHHHTTHHHHHHHH-TTTCCSSCSS-----CCCCSTTCEEEEECCSHHHHHH
T ss_pred HHHHCCcEEEECCCcCchHHHHHHHHHHHHHHhChhHHHHHH-HhcCCcccCC-----CCccccCCeEEEECcCHHHHHH
Confidence 99999999999999999999999999999999999998 665 5889997542 2468999999999999999999
Q ss_pred HHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCCh
Q 007040 178 ATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 178 A~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~ 257 (620)
|++|++|||+|++||++...... + .......+|++++++||+|++|||+|++|+++|+++.|+.||+|++|||+|||+
T Consensus 153 A~~l~~~G~~V~~~dr~~~~~~~-~-~~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~ 230 (324)
T 3evt_A 153 AAKASALGMHVIGVNTTGHPADH-F-HETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGP 230 (324)
T ss_dssp HHHHHHTTCEEEEEESSCCCCTT-C-SEEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGG
T ss_pred HHHHHhCCCEEEEECCCcchhHh-H-hhccccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCCh
Confidence 99999999999999998754331 1 112345689999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHcCCcceeEeecCCC-CCCCCccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCccc
Q 007040 258 LLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAI 336 (620)
Q Consensus 258 vVDe~AL~~AL~~G~I~GAaLDV~E~-P~~~~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~p~nvV 336 (620)
++|++||+++|++|+|+||+||||++ |++.++|||++|||++|||+||+|.++..++.+.+++||.+|+..|++|.|+|
T Consensus 231 ~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~l~~~~~~~n~V 310 (324)
T 3evt_A 231 AVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHISGQIAHFRATVFPIFAANFAQFVKDGTLVRNQV 310 (324)
T ss_dssp GBCHHHHHHHHHTTSCSEEEESSCSSSSCCTTCGGGGCSSEEECCSCTTCCCCHHHHHHHHHHHHHHHHHHHSCCCSCBC
T ss_pred hhhHHHHHHHHHhCCceEEEeCCCCCCCCCCCChhhcCCCEEEcCccccChHHHHHHHHHHHHHHHHHHHhCCCCCCceE
Confidence 99999999999999999999999996 66889999999999999999999999999999999999999987788899999
Q ss_pred cCCCCcc
Q 007040 337 SDTEGCE 343 (620)
Q Consensus 337 n~~~~y~ 343 (620)
|...+|+
T Consensus 311 ~~~~~~~ 317 (324)
T 3evt_A 311 DLNRGYE 317 (324)
T ss_dssp C------
T ss_pred CcccccC
Confidence 9998873
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-60 Score=508.97 Aligned_cols=314 Identities=24% Similarity=0.317 Sum_probs=264.4
Q ss_pred CCCCCCCCCEEEEeCCCCCChhHHhhccCC--ceEEecCCCCCc----ccccccceEEEEecCCCCCHHHHhcCCCCeEE
Q 007040 12 HRDNPTPLPSVVALNCIEDCVLEQDSLAGV--ALVEHVPLGRLA----DGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLI 85 (620)
Q Consensus 12 ~~~~~~~kPkVvvL~~~ed~~~~~~~L~~l--~~v~~~~~~~l~----e~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I 85 (620)
....++++++|++++.+.+ ...+.|+.. .++...+. .++ .+.++++|++++++.+.+++++++++|+||+|
T Consensus 8 ~~~~~~~~~kIl~~~~i~~--~~~~~l~~~g~~~v~~~~~-~~~~~~l~~~~~~~d~l~v~~~~~i~~~~l~~~p~Lk~I 84 (416)
T 3k5p_A 8 RLSLSRDRINVLLLEGISQ--TAVEYFKSSGYTNVTHLPK-ALDKADLIKAISSAHIIGIRSRTQLTEEIFAAANRLIAV 84 (416)
T ss_dssp ----CGGGSCEEECSCCCH--HHHHHHHHTTCCCEEECSS-CCCHHHHHHHHTTCSEEEECSSCCBCHHHHHHCTTCCEE
T ss_pred ccCCCCCCcEEEEECCCCH--HHHHHHHHCCCcEEEECCC-CCCHHHHHHHccCCEEEEEcCCCCCCHHHHHhCCCcEEE
Confidence 3344566788999976543 233445433 25655432 222 24578899998888889999999999999999
Q ss_pred EEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEE
Q 007040 86 LCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVL 165 (620)
Q Consensus 86 ~~~gaG~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktV 165 (620)
++.|+|+|+||+++|+++||.|+|+|++++++||||+++++|+++|+++.+++. .+++.|.... ....+++|++|
T Consensus 85 ~~~~~G~d~IDl~~a~~~GI~V~n~p~~n~~aVAE~~l~l~L~l~R~i~~~~~~-~~~g~W~~~~----~~~~el~gktv 159 (416)
T 3k5p_A 85 GCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVS-AHAGGWEKTA----IGSREVRGKTL 159 (416)
T ss_dssp EECSSCCTTBCHHHHHHTTCCEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHH-HHTTCCCCCC----TTCCCSTTCEE
T ss_pred EECccccCccCHHHHHhcCcEEEeCCCcccHHHHHHHHHHHHHHhcccHHHHHh-hhcccccccC----CCCccCCCCEE
Confidence 999999999999999999999999999999999999999999999999999887 5889997542 23468999999
Q ss_pred EEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccC
Q 007040 166 GIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIK 245 (620)
Q Consensus 166 GIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK 245 (620)
||||+|+||+.+|++|++|||+|++||++..... .+.....+|++++++||+|++|||++++|+++|+++.|+.||
T Consensus 160 GIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~~----~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk 235 (416)
T 3k5p_A 160 GIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQY----GNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMK 235 (416)
T ss_dssp EEECCSHHHHHHHHHHHHTTCEEEEECTTCCCCB----TTBEECSSHHHHHHHCSEEEECCCC-----CCBCHHHHHHSC
T ss_pred EEEeeCHHHHHHHHHHHHCCCEEEEECCcchhcc----cCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCC
Confidence 9999999999999999999999999999753321 234456799999999999999999999999999999999999
Q ss_pred CCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCC-CCCCC----ccccCCCcEEEcCCCCCCcHHHHHHHHHHHHH
Q 007040 246 PGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWME----AWVREMPNVLILPRSADYSEEVWMEIRDKAIS 320 (620)
Q Consensus 246 ~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~-P~~~~----spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~e 320 (620)
+|++|||+|||+++|++||+++|++|+|+||+||||++ |++.+ +|||++||||+|||+||+|.|+..++...+++
T Consensus 236 ~gailIN~aRG~vvd~~aL~~aL~~g~i~gAalDVf~~EP~~~~~~~~~pL~~~~nvilTPHig~~T~ea~~~~~~~~~~ 315 (416)
T 3k5p_A 236 KGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEEAQERIGTEVTR 315 (416)
T ss_dssp TTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEECCCSSCCSSTTSCCCCTTTTCTTEEECCSCTTCCHHHHHHHHHHHHH
T ss_pred CCcEEEECCCChhhhHHHHHHHHHcCCccEEEeCCCCCCCCCcccccchhHhcCCCEEECCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987 44433 79999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCccccC
Q 007040 321 VLQTFFFDGVIPKNAISD 338 (620)
Q Consensus 321 nL~~~L~~G~~p~nvVn~ 338 (620)
||.+|+..|. |.+.||.
T Consensus 316 nl~~~l~~g~-~~~~Vn~ 332 (416)
T 3k5p_A 316 KLVEYSDVGS-TVGAVNF 332 (416)
T ss_dssp HHHHHHHHCC-CTTBSSS
T ss_pred HHHHHHhhCC-CCceeeC
Confidence 9999985555 8888885
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-60 Score=504.40 Aligned_cols=306 Identities=20% Similarity=0.265 Sum_probs=267.1
Q ss_pred HhhccCC-ceEEecCCCCC----cccccccceEEEEecC--CCCCHHHHhcCCCCeEEEEecccCCccchHHHHhcCcEE
Q 007040 35 QDSLAGV-ALVEHVPLGRL----ADGKIEAAAAVLLHSL--AYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRL 107 (620)
Q Consensus 35 ~~~L~~l-~~v~~~~~~~l----~e~~l~~AdaVlv~s~--~~l~~e~l~~lp~LK~I~~~gaG~D~VD~~aa~erGI~V 107 (620)
.+.|+.. .++..++.... ..+.++++|++++... .++++++++++|+||+|++.|+|+|+||+++|.++||.|
T Consensus 33 ~~~L~~~g~ev~~~~~~~~~~~~~~~~~~~ad~li~~~~~~~~~~~~~l~~~p~Lk~i~~~g~G~d~id~~~a~~~gI~V 112 (351)
T 3jtm_A 33 RDWLESQGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTV 112 (351)
T ss_dssp HHHHHHTTCEEEEESCCSSTTSHHHHHTTTCSEEEECTTSCCCBCHHHHHHCSSCCEEEESSSCCTTBCHHHHHHTTCEE
T ss_pred HHHHHHCCCEEEEeCCCCCCHHHHHHHhCCCEEEEEccCCCCCCCHHHHhhCCCCeEEEEeCeeecccCHHHHHhcCeeE
Confidence 3445443 46665543322 2356889999998753 468999999999999999999999999999999999999
Q ss_pred EEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCE
Q 007040 108 IHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMS 187 (620)
Q Consensus 108 tNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~ 187 (620)
+|+||+++.+||||++++||+++|++..+++. .+++.|..... .....+|+|++|||||+|+||+.+|++|++|||+
T Consensus 113 ~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~-~~~g~W~~~~~--~~~~~~l~gktvGIIG~G~IG~~vA~~l~~~G~~ 189 (351)
T 3jtm_A 113 AEVTGSNVVSVAEDELMRILILMRNFVPGYNQ-VVKGEWNVAGI--AYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCN 189 (351)
T ss_dssp EECTTTTHHHHHHHHHHHHHHHHHTHHHHHHH-HHTTCCCHHHH--HTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCCE
T ss_pred EECCCcCchHHHHHHHHHHHHHhhCcHHHHHH-HHcCCCccccc--cCCcccccCCEEeEEEeCHHHHHHHHHHHHCCCE
Confidence 99999999999999999999999999999886 58899974210 1123579999999999999999999999999999
Q ss_pred EEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHH
Q 007040 188 VLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQL 267 (620)
Q Consensus 188 V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~A 267 (620)
|++||++..........++....++++++++||+|++|||+|++|+++|+++.|+.||+|++|||+|||+++|++||+++
T Consensus 190 V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~a 269 (351)
T 3jtm_A 190 LLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDA 269 (351)
T ss_dssp EEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHH
T ss_pred EEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHH
Confidence 99999986443322334556667999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcceeEeecCCC-CCCCCccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCC--CCccccCCCCccC
Q 007040 268 LIDGTLAGCALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVI--PKNAISDTEGCEN 344 (620)
Q Consensus 268 L~~G~I~GAaLDV~E~-P~~~~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~--p~nvVn~~~~y~~ 344 (620)
|++|+|+||+||||++ |++.++|||++|||++|||+||+|.++..++...+++||.+|+ .|++ |.|+|+.+..|.+
T Consensus 270 L~~g~i~ga~lDV~~~EP~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~-~g~~~~~~~~i~~~~~~~~ 348 (351)
T 3jtm_A 270 VESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLERYF-KGEDFPTENYIVKDGELAP 348 (351)
T ss_dssp HHHTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCGGGSHHHHHHHHHHHHHHHHHHH-HTCCCCGGGEEEETTEECG
T ss_pred HHhCCccEEEeCCCCCCCCCCCChhhcCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHH-cCCCCCCceEEecCCcccc
Confidence 9999999999999996 7788999999999999999999999999999999999999997 7774 9999998887754
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-59 Score=497.52 Aligned_cols=317 Identities=22% Similarity=0.243 Sum_probs=272.2
Q ss_pred EEEEeCCCCCCh---hHHhhccCCceEEecCCCCCc----ccccccceEEEE-ecCCCCCHHHHhcCCCCeEEEEecccC
Q 007040 21 SVVALNCIEDCV---LEQDSLAGVALVEHVPLGRLA----DGKIEAAAAVLL-HSLAYLPRAAQRRLRPYQLILCLGSSD 92 (620)
Q Consensus 21 kVvvL~~~ed~~---~~~~~L~~l~~v~~~~~~~l~----e~~l~~AdaVlv-~s~~~l~~e~l~~lp~LK~I~~~gaG~ 92 (620)
+|++++...... ..++.|++ .++..++....+ .+.++++|++++ ++...+++++++++|+||+|++.|+|+
T Consensus 4 ki~~~d~~~~~~~~~~~~~~l~~-~~v~~~~~~~~~~~~l~~~~~~ad~li~~~~~~~~~~~~l~~~~~Lk~I~~~g~G~ 82 (352)
T 3gg9_A 4 KIAVLDDYQDAVRKLDCFSLLQD-HEVKVFNNTVKGVGQLAARVADVEALVLIRERTRVTRQLLDRLPKLKIISQTGRVS 82 (352)
T ss_dssp EEEECCCTTCCGGGSGGGGGGTT-SEEEECCSCCCSHHHHHHHTTTCSEEEECTTSSCBCHHHHTTCTTCCEEEESSCCC
T ss_pred EEEEEcCccccchhhhhhhhhcC-ceEEEecCCCCCHHHHHHHhcCCeEEEEeCCCCCCCHHHHhhCCCCeEEEEeCccc
Confidence 677777654432 12345655 577666532211 256789999998 466789999999999999999999999
Q ss_pred ----CccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCC------CCCCCcceeecC
Q 007040 93 ----RTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSV------QPLCRGMRRCRG 162 (620)
Q Consensus 93 ----D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~------~~~~~~~~~L~G 162 (620)
|+||+++|+++||.|+|+||+ +.+||||+++++|+++|+++.+++. .+++.|.... .+....+.+|+|
T Consensus 83 ~~~~d~id~~~a~~~gI~V~n~pg~-~~~vAE~al~l~L~~~R~~~~~~~~-~~~g~W~~~~~~~~~~~~~~~~~~~l~g 160 (352)
T 3gg9_A 83 RDAGGHIDLEACTDKGVVVLEGKGS-PVAPAELTWALVMAAQRRIPQYVAS-LKHGAWQQSGLKSTTMPPNFGIGRVLKG 160 (352)
T ss_dssp CSSSCSBCHHHHHHHTCEEECCCCC-SHHHHHHHHHHHHHHHTTHHHHHHH-HHTTCTTCCCCCCTTSCTTTTSBCCCTT
T ss_pred CCccCcccHHHHHhCCeEEEECCCC-cHHHHHHHHHHHHHHHhhHHHHHHH-HHcCCCCcccccccccccccccCccCCC
Confidence 999999999999999999999 9999999999999999999999987 5789997532 111123478999
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQ 242 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~ 242 (620)
++|||||+|.||+++|++|++|||+|++||++... ......++....++++++++||+|++|||+|++|+++|+.+.|+
T Consensus 161 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~ 239 (352)
T 3gg9_A 161 QTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSK-ERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLT 239 (352)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHH-HHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCBCHHHHT
T ss_pred CEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCH-HHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCHHHHh
Confidence 99999999999999999999999999999998522 22233455666799999999999999999999999999999999
Q ss_pred ccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCC-CCCCCccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHH
Q 007040 243 HIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISV 321 (620)
Q Consensus 243 ~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~-P~~~~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~en 321 (620)
.||+|++|||+|||+++|++||+++|++|+|+||+||||++ |++.++|||++||||+|||+||+|.++.+++.+.+++|
T Consensus 240 ~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~n 319 (352)
T 3gg9_A 240 RMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIGYVERESYEMYFGIAFQN 319 (352)
T ss_dssp TSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCSSSCCCSCCGGGGCTTEEECCSCTTCBHHHHHHHHHHHHHH
T ss_pred hCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEecccCCCCCCCCChhhcCCCEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999996 66789999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCccccCCCCcc
Q 007040 322 LQTFFFDGVIPKNAISDTEGCE 343 (620)
Q Consensus 322 L~~~L~~G~~p~nvVn~~~~y~ 343 (620)
|.+|+ +|+ |.|+||++...+
T Consensus 320 i~~~~-~G~-p~~~Vn~~~~~~ 339 (352)
T 3gg9_A 320 ILDIL-QGN-VDSVANPTALAP 339 (352)
T ss_dssp HHHHH-TTC-CTTBSCGGGSSC
T ss_pred HHHHH-cCC-CCcccCHHHHHH
Confidence 99997 886 679999766543
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-60 Score=496.69 Aligned_cols=308 Identities=21% Similarity=0.245 Sum_probs=259.3
Q ss_pred CCEEEEeCCCCCChhHHhhc-cC-CceEEecCC--CCCcccccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCCc
Q 007040 19 LPSVVALNCIEDCVLEQDSL-AG-VALVEHVPL--GRLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRT 94 (620)
Q Consensus 19 kPkVvvL~~~ed~~~~~~~L-~~-l~~v~~~~~--~~l~e~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D~ 94 (620)
+-+|+++.... ....+.| +. ..+++.... .+...+.++++|+++++. .+++++++++|+||||++.|+|+|+
T Consensus 5 ~mkili~~~~~--~~~~~~L~~~~~p~~~~~~~~~~~~~~~~~~~ad~li~~~--~~~~~~l~~~~~Lk~I~~~~~G~d~ 80 (324)
T 3hg7_A 5 QRTLLLLSQDN--AHYERLLKAAHLPHLRILRADNQSDAEKLIGEAHILMAEP--ARAKPLLAKANKLSWFQSTYAGVDV 80 (324)
T ss_dssp CEEEEEESTTH--HHHHHHHHHSCCTTEEEEECSSHHHHHHHGGGCSEEEECH--HHHGGGGGGCTTCCEEEESSSCCGG
T ss_pred ccEEEEecCCC--HHHHHHHhhccCCCeEEEeCCChhHHHHHhCCCEEEEECC--CCCHHHHhhCCCceEEEECCCCCCc
Confidence 34677776542 2334445 32 234433322 122235688999988763 3557789999999999999999999
Q ss_pred cchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhh
Q 007040 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASA 174 (620)
Q Consensus 95 VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG 174 (620)
||.+++.+ ||.|+|+||+++.+||||+++++|+++|+++.+++. .+++.|... ...+++|++|||||+|.||
T Consensus 81 id~~~~~~-gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~-~~~g~W~~~------~~~~l~g~tvGIIGlG~IG 152 (324)
T 3hg7_A 81 LLDARCRR-DYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQ-QKQRLWQSH------PYQGLKGRTLLILGTGSIG 152 (324)
T ss_dssp GSCTTSCC-SSEEECCCSCCHHHHHHHHHHHHHHHHTTHHHHHHH-HHTTCCCCC------CCCCSTTCEEEEECCSHHH
T ss_pred cChHHHhC-CEEEEECCCcChHHHHHHHHHHHHHHHhChHHHHHH-HhhCCCcCC------CCcccccceEEEEEECHHH
Confidence 99988865 999999999999999999999999999999999987 588999743 2358999999999999999
Q ss_pred HHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcC
Q 007040 175 RALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 175 ~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvg 254 (620)
+++|++|++|||+|++||+++.... .+ .......+|++++++||+|++|||+|++|+++|+.+.|+.||+|++|||+|
T Consensus 153 ~~vA~~l~~~G~~V~~~dr~~~~~~-~~-~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~a 230 (324)
T 3hg7_A 153 QHIAHTGKHFGMKVLGVSRSGRERA-GF-DQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVG 230 (324)
T ss_dssp HHHHHHHHHTTCEEEEECSSCCCCT-TC-SEEECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECS
T ss_pred HHHHHHHHhCCCEEEEEcCChHHhh-hh-hcccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECC
Confidence 9999999999999999999874332 11 223345689999999999999999999999999999999999999999999
Q ss_pred CChhhcHHHHHHHHHcCCcceeEeecCCC-CCCCCccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 007040 255 SSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPK 333 (620)
Q Consensus 255 RG~vVDe~AL~~AL~~G~I~GAaLDV~E~-P~~~~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~p~ 333 (620)
||+++|++||+++|++|+|+||+||||++ |++.++|||++||||+|||+||+|.+ .++.+.+++||.+|+ +|++|.
T Consensus 231 RG~~vde~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~--~~~~~~~~~nl~~~~-~G~~~~ 307 (324)
T 3hg7_A 231 RGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYSFP--DDVAQIFVRNYIRFI-DGQPLD 307 (324)
T ss_dssp CGGGBCHHHHHHHHHTTSSSEEEESCCSSSSCCTTCTTTTCTTEEECCSCSSCCCH--HHHHHHHHHHHHHHH-TTCCCT
T ss_pred CchhhCHHHHHHHHHcCCceEEEeccCCCCCCCCCChhhcCCCEEEeCCCccccHH--HHHHHHHHHHHHHHH-cCCCCc
Confidence 99999999999999999999999999996 76889999999999999999999976 579999999999996 999999
Q ss_pred ccccCCCCcc
Q 007040 334 NAISDTEGCE 343 (620)
Q Consensus 334 nvVn~~~~y~ 343 (620)
|+||++.+|+
T Consensus 308 ~~V~~~~~~~ 317 (324)
T 3hg7_A 308 GKIDFDKGYE 317 (324)
T ss_dssp TBCCCC----
T ss_pred ceEChhhhcc
Confidence 9999999885
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-59 Score=497.29 Aligned_cols=313 Identities=18% Similarity=0.192 Sum_probs=259.8
Q ss_pred CCCEEEEeCCCCC-----ChhHHhhccCCceEEecCC---CCCcccccccceEEEEecCCCCCHHHHhcCCCCeEEEEe-
Q 007040 18 PLPSVVALNCIED-----CVLEQDSLAGVALVEHVPL---GRLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCL- 88 (620)
Q Consensus 18 ~kPkVvvL~~~ed-----~~~~~~~L~~l~~v~~~~~---~~l~e~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~- 88 (620)
.+|+|++...... .+...+.|+..+++..... +++.+..+.++++++. ..++++++++++|+||+|+..
T Consensus 27 ~r~ivll~~~~~~~~~~~~~~~~~~L~~~~~v~~~~~~~~~e~~~~~~~~~~~i~~--~~~i~~~~l~~~p~Lk~I~~~~ 104 (365)
T 4hy3_A 27 ERPLAISAPEPRSLDLIFSDEARAALHSKYEIVEADPENIAGLGDDILGRARYIIG--QPPLSAETLARMPALRSILNVE 104 (365)
T ss_dssp -CCEEEEECTTSCHHHHCCHHHHHHHHHHSEEEECCGGGGGGSCTTHHHHEEEEEE--CCCCCHHHHTTCTTCCEEECCS
T ss_pred CCCEEEEcCCcccccccCCHHHHHHHhCCcEEEECCCCChHHHHHHhhCCeEEEEe--CCCCCHHHHhhCCCCeEEEEec
Confidence 4666666643222 1223556666667764432 2233334456666664 358999999999999999975
Q ss_pred cccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCC--CCCCCCCCCCcceeecCcEEE
Q 007040 89 GSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASG--WLGSVQPLCRGMRRCRGLVLG 166 (620)
Q Consensus 89 gaG~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~--W~~~~~~~~~~~~~L~GktVG 166 (620)
|+|+|+||+++|+++||.|+|+|++++.+||||+++++|+++|++..+++. .+++. |.... .....+++|++||
T Consensus 105 ~~G~d~iD~~~a~~~GI~V~n~~~~~~~~vAE~~l~l~L~~~R~~~~~~~~-~r~g~~~w~~~~---~~~~~~l~gktvG 180 (365)
T 4hy3_A 105 SNLLNNMPYEVLFQRGIHVVTTGQVFAEPVAEIGLGFALALARGIVDADIA-FQEGTELWGGEG---NASARLIAGSEIG 180 (365)
T ss_dssp SSCCSCSCTTHHHHSCCEEEECGGGGHHHHHHHHHHHHHHHHHTTTHHHHH-HHHTCCCCSSSS---TTSCCCSSSSEEE
T ss_pred ccccCcccHHHHhcCCeEEEeCCCccchHHHHHHHHHHHHHHhchhHHHHH-HHcCCccccccc---cccccccCCCEEE
Confidence 889999999999999999999999999999999999999999999999887 47777 53321 1234689999999
Q ss_pred EEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCC
Q 007040 167 IVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKP 246 (620)
Q Consensus 167 IIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~ 246 (620)
|||+|.||+.+|++|++|||+|++||++... ......++. ..+|++++++||+|++|||+|++|+++|+++.|+.||+
T Consensus 181 IIGlG~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~-~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~ 258 (365)
T 4hy3_A 181 IVGFGDLGKALRRVLSGFRARIRVFDPWLPR-SMLEENGVE-PASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRR 258 (365)
T ss_dssp EECCSHHHHHHHHHHTTSCCEEEEECSSSCH-HHHHHTTCE-ECCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCT
T ss_pred EecCCcccHHHHHhhhhCCCEEEEECCCCCH-HHHhhcCee-eCCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCC
Confidence 9999999999999999999999999998532 212223444 45899999999999999999999999999999999999
Q ss_pred CcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCC-CCCCCccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHH
Q 007040 247 GAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTF 325 (620)
Q Consensus 247 gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~-P~~~~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~ 325 (620)
|++|||+|||++||++||+++|++|+|+ |+||||++ |++.++|||++|||++|||+||+|.++..++...+++||.+|
T Consensus 259 gailIN~aRG~~vde~aL~~aL~~g~i~-aaLDV~~~EPl~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~ 337 (365)
T 4hy3_A 259 GAAFILLSRADVVDFDALMAAVSSGHIV-AASDVYPEEPLPLDHPVRSLKGFIRSAHRAGALDSAFKKMGDMVLEDMDLM 337 (365)
T ss_dssp TCEEEECSCGGGSCHHHHHHHHHTTSSE-EEESCCSSSSCCTTCGGGTCTTEEECCSCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEECcCCchhCHHHHHHHHHcCCce-EEeeCCCCCCCCCCChhhcCCCEEECCccccCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 99999996 667899999999999999999999999999999999999999
Q ss_pred HHcCCCCCccccCCC
Q 007040 326 FFDGVIPKNAISDTE 340 (620)
Q Consensus 326 L~~G~~p~nvVn~~~ 340 (620)
+ +|++|.++||.+.
T Consensus 338 ~-~G~~~~~~vn~~~ 351 (365)
T 4hy3_A 338 D-RGLPPMRCKRAER 351 (365)
T ss_dssp H-TTCCCCSSEECCS
T ss_pred H-cCCCcccccccch
Confidence 6 9999999998743
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-59 Score=502.21 Aligned_cols=308 Identities=24% Similarity=0.253 Sum_probs=260.1
Q ss_pred CCEEEEeCCCCCChhHHhhccCC-c-eEEecCCCCCcc----cccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccC
Q 007040 19 LPSVVALNCIEDCVLEQDSLAGV-A-LVEHVPLGRLAD----GKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSD 92 (620)
Q Consensus 19 kPkVvvL~~~ed~~~~~~~L~~l-~-~v~~~~~~~l~e----~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~ 92 (620)
+++|++++.+. +...+.|+.. . ++...+. .+++ +.++++|++++.+.+.+++++++++|+||+|+++|+|+
T Consensus 4 ~~kil~~~~~~--~~~~~~l~~~~~~~v~~~~~-~~~~~~l~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~ 80 (404)
T 1sc6_A 4 KIKFLLVEGVH--QKALESLRAAGYTNIEFHKG-ALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAIGT 80 (404)
T ss_dssp SCCEEECSCCC--HHHHHHHHHTTCCCEEECSS-CCCHHHHHHHTTSCSEEEECSSCCBCHHHHHHCSSCCEEEECSSCC
T ss_pred ceEEEEeCCCC--HHHHHHHHhCCCcEEEEcCC-CCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhCCCCcEEEECCccc
Confidence 45788876543 2233445433 2 5655432 2221 45789999998888899999999999999999999999
Q ss_pred CccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCCh
Q 007040 93 RTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSA 172 (620)
Q Consensus 93 D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~ 172 (620)
|+||+++|+++||.|+|+|++++.+||||++++||+++|+++.++.. .+++.|.... ....+++|++|||||+|+
T Consensus 81 d~iD~~~a~~~GI~V~n~p~~n~~~vAE~~~~~~L~~~R~i~~~~~~-~~~g~W~~~~----~~~~el~gktlGiIGlG~ 155 (404)
T 1sc6_A 81 NQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAK-AHRGVGNKLA----AGSFEARGKKLGIIGYGH 155 (404)
T ss_dssp TTBCHHHHHHTTCCEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHH-HHHTCCC---------CCCSTTCEEEEECCSH
T ss_pred CccCHHHHHhCCCEEEecCcccHHHHHHHHHHHHHHHHhChHHHHHH-HHcCCccccC----CCccccCCCEEEEEeECH
Confidence 99999999999999999999999999999999999999999999887 5889996431 223689999999999999
Q ss_pred hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEE
Q 007040 173 SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVN 252 (620)
Q Consensus 173 IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLIN 252 (620)
||+.+|++|++|||+|++||++..... .++....+|++++++||+|++|||++++|+++|+++.|+.||+|++|||
T Consensus 156 IG~~vA~~l~~~G~~V~~~d~~~~~~~----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN 231 (404)
T 1sc6_A 156 IGTQLGILAESLGMYVYFYDIENKLPL----GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLIN 231 (404)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCCCC----TTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEcCCchhcc----CCceecCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEE
Confidence 999999999999999999999764321 1244556899999999999999999999999999999999999999999
Q ss_pred cCCChhhcHHHHHHHHHcCCcceeEeecCCC-CCC----CCccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHH
Q 007040 253 TGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQW----MEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFF 327 (620)
Q Consensus 253 vgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~-P~~----~~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~ 327 (620)
+|||+++|++||+++|++|+|+||+||||++ |++ .++|||++||||+|||+|++|.|+..++...+++||.+|+
T Consensus 232 ~aRg~~vd~~aL~~aL~~g~i~gA~lDVf~~EP~~~~~~~~~pL~~~~nvilTPHi~~~T~ea~~~~~~~~~~nl~~~l- 310 (404)
T 1sc6_A 232 ASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYS- 310 (404)
T ss_dssp CSCSSSBCHHHHHHHHHTTSEEEEEEEC---------CTTTGGGTTCTTEEEECCCSCCSHHHHHHHHHHHHHHHHHHH-
T ss_pred CCCChHHhHHHHHHHHHcCCccEEEEeecCCCCCCccccccchhhcCCCEEECCCCCCCcHHHHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999999999999987 443 2579999999999999999999999999999999999997
Q ss_pred cCCCCCccccCC
Q 007040 328 DGVIPKNAISDT 339 (620)
Q Consensus 328 ~G~~p~nvVn~~ 339 (620)
.|..|.|.||.-
T Consensus 311 ~g~~~~~~vn~p 322 (404)
T 1sc6_A 311 DNGSTLSAVNFP 322 (404)
T ss_dssp HHCCCTTBSSSC
T ss_pred cCCCCcceeccc
Confidence 555689999843
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-59 Score=491.11 Aligned_cols=311 Identities=20% Similarity=0.231 Sum_probs=257.2
Q ss_pred EEEEeCCCCC-ChhHHhhccCC-ceEEecCC--CCCcccccccceEEEEecCCCCCHH-HHhcCC--CCeEEEEecccCC
Q 007040 21 SVVALNCIED-CVLEQDSLAGV-ALVEHVPL--GRLADGKIEAAAAVLLHSLAYLPRA-AQRRLR--PYQLILCLGSSDR 93 (620)
Q Consensus 21 kVvvL~~~ed-~~~~~~~L~~l-~~v~~~~~--~~l~e~~l~~AdaVlv~s~~~l~~e-~l~~lp--~LK~I~~~gaG~D 93 (620)
||+++...+. .+...+.++.. .++...+. .+...+.++++|++++...++++++ +++++| +||+|++.|+|+|
T Consensus 3 ki~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d 82 (343)
T 2yq5_A 3 KIAMYNVSPIEVPYIEDWAKKNDVEIKTTDQALTSATVDLAEGCSSVSLKPLGPVDEEVVYQKLSEYGVKCIGLRIVGFN 82 (343)
T ss_dssp EEEEESCCGGGHHHHHHHHHHHTCEEEEESSCCSTTGGGGGTTCSEEEECCSSCBCCHHHHHHHHHTTCCEEEESSSCCT
T ss_pred eEEEEecCcccHHHHHHHHHhCCeEEEECCCCCCHHHHHHhcCCcEEEEcCCCCcCHHHHHHhccccCceEEEECceeec
Confidence 5666653222 22323333322 35555432 1222356889999999877899999 999986 5999999999999
Q ss_pred ccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHH-hCCCCCCCCCCCCcceeecCcEEEEEeCCh
Q 007040 94 TVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALS-ASGWLGSVQPLCRGMRRCRGLVLGIVGRSA 172 (620)
Q Consensus 94 ~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~-~g~W~~~~~~~~~~~~~L~GktVGIIGlG~ 172 (620)
+||+++|+++||.|+|+|++++++||||+++++|+++|++..+++.. + ++.|..... ...++|+|++|||||+|.
T Consensus 83 ~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~-~~~g~~~w~~~---~~~~~l~gktvgIiGlG~ 158 (343)
T 2yq5_A 83 TINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRM-DHDHDFTWPSN---LISNEIYNLTVGLIGVGH 158 (343)
T ss_dssp TBCSSTTCC--CEEECCSCSCHHHHHHHHHHHHHHHHHTHHHHHHHH-HHHCCCCCCGG---GCBCCGGGSEEEEECCSH
T ss_pred ccchhHHHhCCEEEEECCCCCcHHHHHHHHHHHHHHHhchHHHHHHH-HHcCCcccccC---CCccccCCCeEEEEecCH
Confidence 99999999999999999999999999999999999999999998874 5 676642111 234689999999999999
Q ss_pred hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEE
Q 007040 173 SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVN 252 (620)
Q Consensus 173 IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLIN 252 (620)
||+++|++|++|||+|++||++.... ...+. ...++++++++||+|++|||+|++|+++|+.+.|+.||+|++|||
T Consensus 159 IG~~vA~~l~~~G~~V~~~d~~~~~~---~~~~~-~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN 234 (343)
T 2yq5_A 159 IGSAVAEIFSAMGAKVIAYDVAYNPE---FEPFL-TYTDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLIN 234 (343)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCGG---GTTTC-EECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEE
T ss_pred HHHHHHHHHhhCCCEEEEECCChhhh---hhccc-cccCHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEE
Confidence 99999999999999999999987532 22223 334999999999999999999999999999999999999999999
Q ss_pred cCCChhhcHHHHHHHHHcCCcceeEeecCCCCC---CCC-----------ccccCCCcEEEcCCCCCCcHHHHHHHHHHH
Q 007040 253 TGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQ---WME-----------AWVREMPNVLILPRSADYSEEVWMEIRDKA 318 (620)
Q Consensus 253 vgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~---~~~-----------spL~~~pNVIlTPHiAg~T~ea~~~~~~~a 318 (620)
+|||+++|++||+++|++|+|+||+||||++|| +.+ +|||++||||+|||+|++|.++..++.+.+
T Consensus 235 ~aRg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~l~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~ 314 (343)
T 2yq5_A 235 CARGELVDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVITPHSAFYTETSIRNMVQIC 314 (343)
T ss_dssp CSCGGGBCHHHHHHHHHHTSSSCEEESCCTTGGGTTTCCSCCTTTSCHHHHHHTTCTTEEECSSCTTCBHHHHHHHHHHH
T ss_pred CCCChhhhHHHHHHHHHcCCCcEEEecccccCCCccccccccccccccchhHHhcCCCEEECCccccchHHHHHHHHHHH
Confidence 999999999999999999999999999999743 334 589999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCccccCCC
Q 007040 319 ISVLQTFFFDGVIPKNAISDTE 340 (620)
Q Consensus 319 ~enL~~~L~~G~~p~nvVn~~~ 340 (620)
++||.+|+ +|+.|.|.||+..
T Consensus 315 ~~ni~~~l-~g~~~~~~v~~~~ 335 (343)
T 2yq5_A 315 LTDQLTIA-KGGRPRSIVNLTA 335 (343)
T ss_dssp HHHHHHHH-TTCCCTTBC----
T ss_pred HHHHHHHH-cCCCCCceECCcc
Confidence 99999996 8888999998754
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-58 Score=484.56 Aligned_cols=271 Identities=17% Similarity=0.207 Sum_probs=239.6
Q ss_pred ccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCCcc-c-hHH---HHhcCcEEEEcCCCC-hHHHHHHHHHHHHHH
Q 007040 56 KIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTV-D-SAL---AADLGLRLIHVDTSR-AEEIADTVMALLLGL 129 (620)
Q Consensus 56 ~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D~V-D-~~a---a~erGI~VtNtpg~~-a~aVAE~aLaLiLal 129 (620)
...++|+++++. ++++++++ |+||||++.|+|+|+| | +++ +.++||.|+|+++++ +.+||||+++++|++
T Consensus 38 ~~~~ad~~i~~~---~~~~~l~~-~~Lk~I~~~~aG~d~i~d~~~a~~~~~~~gi~v~~~~~~~~~~~vAE~~~~~~L~~ 113 (315)
T 3pp8_A 38 DNNPADYALVWQ---PPVEMLAG-RRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHW 113 (315)
T ss_dssp CCSCCSEEEESS---CCHHHHTT-CCCSEEEESSSCCHHHHHHHHHCTTSSCTTSCEEEC--CCCHHHHHHHHHHHHHHH
T ss_pred CccCcEEEEECC---CCHHHhCC-CCceEEEECCEecccccchhhhhhhhhcCCCEEEEcCCCCccHHHHHHHHHHHHHH
Confidence 456899999884 57999999 9999999999999999 7 887 678899999999874 899999999999999
Q ss_pred HhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceec
Q 007040 130 LRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRM 209 (620)
Q Consensus 130 ~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~ 209 (620)
.|++..+++. .+++.|... ..++++|++|||||+|.||+++|++|++|||+|++||+++..... .. .....
T Consensus 114 ~R~~~~~~~~-~~~g~W~~~------~~~~l~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-~~-~~~~~ 184 (315)
T 3pp8_A 114 FRRFDDYQAL-KNQALWKPL------PEYTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPG-VE-SYVGR 184 (315)
T ss_dssp HTTHHHHHHH-HHTTCCCCC------CCCCSTTCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTT-CE-EEESH
T ss_pred HhCChHHHHH-HHhcccCCC------CCCCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhh-hh-hhccc
Confidence 9999999887 578999753 236799999999999999999999999999999999998754321 11 11112
Q ss_pred CCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCC-CCCCC
Q 007040 210 DTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWME 288 (620)
Q Consensus 210 ~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~-P~~~~ 288 (620)
.+|++++++||+|++|||+|++|+++|+++.|+.||+|++|||+|||+++|++||+++|++|+|+||+||||++ |++.+
T Consensus 185 ~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~ 264 (315)
T 3pp8_A 185 EELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQE 264 (315)
T ss_dssp HHHHHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTT
T ss_pred CCHHHHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhCCccEEEcCCCCCCCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999996 77889
Q ss_pred ccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCc
Q 007040 289 AWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTEGC 342 (620)
Q Consensus 289 spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~p~nvVn~~~~y 342 (620)
+|||++|||++|||+|++|.+ .++.+.+++||.+|+ +|++|.|+||++.||
T Consensus 265 ~pL~~~~nvilTPHia~~t~~--~~~~~~~~~ni~~~~-~G~~~~~~V~~~~GY 315 (315)
T 3pp8_A 265 SPLWRHPRVAMTPHIAAVTRP--AEAIDYISRTITQLE-KGEPVTGQVDRARGY 315 (315)
T ss_dssp CGGGGCTTEEECSSCSSCCCH--HHHHHHHHHHHHHHH-HTCCCCCBCCCC---
T ss_pred ChhhcCCCEEECCCCCcccHH--HHHHHHHHHHHHHHH-cCCCCCceECcccCC
Confidence 999999999999999999986 689999999999996 899999999999998
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-58 Score=485.54 Aligned_cols=318 Identities=30% Similarity=0.486 Sum_probs=270.1
Q ss_pred CCCCCEEEEeCCCCCChhHHhhccCCceEEecCCCC---CcccccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccC
Q 007040 16 PTPLPSVVALNCIEDCVLEQDSLAGVALVEHVPLGR---LADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSD 92 (620)
Q Consensus 16 ~~~kPkVvvL~~~ed~~~~~~~L~~l~~v~~~~~~~---l~e~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~ 92 (620)
++.+|+|++++.. ....+.+.++...++..++... +.+..+.++++++++....+++++++++|+||+|++.|+|+
T Consensus 18 ~~~kp~i~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~ 96 (347)
T 1mx3_A 18 GSHMPLVALLDGR-DCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGF 96 (347)
T ss_dssp ---CCEEEESSCS-CCTTTHHHHTTTCEEEECCCSSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSCCEEEESSSCC
T ss_pred CCCCCEEEEEcCC-cchhhHHHhhccceEEecCCCCHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhCCCCCEEEEccccc
Confidence 3569999999863 3344577888877777765322 22222467788888877789999999999999999999999
Q ss_pred CccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCC---CCCCcceeecCcEEEEEe
Q 007040 93 RTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQ---PLCRGMRRCRGLVLGIVG 169 (620)
Q Consensus 93 D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~---~~~~~~~~L~GktVGIIG 169 (620)
|+||+++|.++||.|+|+|++++++||||++++||+++|++..+++. .+++.|..... ....+..+++|++|||||
T Consensus 97 d~id~~~~~~~gI~V~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~-~~~g~w~~~~~~~~~~~~~~~~l~g~tvGIIG 175 (347)
T 1mx3_A 97 DNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQA-LREGTRVQSVEQIREVASGAARIRGETLGIIG 175 (347)
T ss_dssp TTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHCHHHHHHH-HHTTCCCCSHHHHHHHTTTCCCCTTCEEEEEC
T ss_pred CcccHHHHHhCCceEEECCCCCHHHHHHHHHHHHHHHHHhHHHHHHH-HHcCCcccccccccccccCccCCCCCEEEEEe
Confidence 99999999999999999999999999999999999999999999887 58889953210 001123579999999999
Q ss_pred CChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcE
Q 007040 170 RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAF 249 (620)
Q Consensus 170 lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAi 249 (620)
+|+||+.+|++|++|||+|++||++..... ....++....++++++++||+|++|||++++|+++|+++.|+.||+|++
T Consensus 176 ~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gai 254 (347)
T 1mx3_A 176 LGRVGQAVALRAKAFGFNVLFYDPYLSDGV-ERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAF 254 (347)
T ss_dssp CSHHHHHHHHHHHTTTCEEEEECTTSCTTH-HHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEE
T ss_pred ECHHHHHHHHHHHHCCCEEEEECCCcchhh-HhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCE
Confidence 999999999999999999999999865422 2223445556899999999999999999999999999999999999999
Q ss_pred EEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCC-C-CCccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHH
Q 007040 250 LVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQ-W-MEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFF 327 (620)
Q Consensus 250 LINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~-~-~~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~ 327 (620)
|||+|||+++|+++|+++|++|+|+||+||||+.+| + .++|||.+|||++|||+|++|+++..++.+.+++||.+|+
T Consensus 255 lIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~~L~~~~nvi~tPHia~~t~~~~~~~~~~~~~ni~~~~- 333 (347)
T 1mx3_A 255 LVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEAAREIRRAI- 333 (347)
T ss_dssp EEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSEEECSSCTTCCHHHHHHHHHHHHHHHHHHH-
T ss_pred EEECCCChHHhHHHHHHHHHhCCCcEEEEeecccCCCCCCCchHHhCCCEEEEchHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 999999999999999999999999999999999744 4 3689999999999999999999999999999999999997
Q ss_pred cCCCCC---cccc
Q 007040 328 DGVIPK---NAIS 337 (620)
Q Consensus 328 ~G~~p~---nvVn 337 (620)
+|++|. |+||
T Consensus 334 ~g~~~~~l~~~v~ 346 (347)
T 1mx3_A 334 TGRIPDSLKNCVN 346 (347)
T ss_dssp HSCTTTTCSSBCC
T ss_pred cCCCCcccCCCCC
Confidence 777665 6775
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-58 Score=491.35 Aligned_cols=322 Identities=18% Similarity=0.261 Sum_probs=269.6
Q ss_pred CCCEEEEeCCCCCChhHHhhccCC-ceEEecCCCC----CcccccccceEEEEecC--CCCCHHHHhcCCCCeEEEEecc
Q 007040 18 PLPSVVALNCIEDCVLEQDSLAGV-ALVEHVPLGR----LADGKIEAAAAVLLHSL--AYLPRAAQRRLRPYQLILCLGS 90 (620)
Q Consensus 18 ~kPkVvvL~~~ed~~~~~~~L~~l-~~v~~~~~~~----l~e~~l~~AdaVlv~s~--~~l~~e~l~~lp~LK~I~~~ga 90 (620)
.+|+|+..+. ......+.|+.. .++..++... ...+.+.++|++++... ..+++++++++|+||||++.|+
T Consensus 16 ~~~~vl~~d~--~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~l~~~~~Lk~I~~~~~ 93 (364)
T 2j6i_A 16 DEEKLYGCTE--NKLGIANWLKDQGHELITTSDKEGGNSVLDQHIPDADIIITTPFHPAYITKERIDKAKKLKLVVVAGV 93 (364)
T ss_dssp HCTTCTTBTT--TGGGCHHHHHHTTCEEEEESCCSSTTSHHHHHGGGCSEEEECTTSCCCBCHHHHHHCTTCCEEEESSS
T ss_pred cCceEEEecC--ccHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHhhCCeEEEecCcCCCCCCHHHHhhCCCCeEEEECCc
Confidence 4566555543 222223344432 3555544221 12245788999888643 3589999999999999999999
Q ss_pred cCCccchHHHHhc--CcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEE
Q 007040 91 SDRTVDSALAADL--GLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIV 168 (620)
Q Consensus 91 G~D~VD~~aa~er--GI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGII 168 (620)
|+|+||+++|.++ ||.|+|+|++++.+||||++++||++.|+++.+++. .+++.|.... ......+|+|++||||
T Consensus 94 G~d~id~~~~~~~~~gI~V~n~pg~~~~~vAE~~~~~~L~~~R~~~~~~~~-~~~g~W~~~~--~~~~~~~l~g~tvgII 170 (364)
T 2j6i_A 94 GSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQ-IINHDWEVAA--IAKDAYDIEGKTIATI 170 (364)
T ss_dssp CCTTBCHHHHHHHTCCCEEEECTTSSHHHHHHHHHHHHHHHHTTHHHHHHH-HHTTCCCHHH--HHTTCCCSTTCEEEEE
T ss_pred ccccccHHHHHhcCCCEEEEECCCcCcHHHHHHHHHHHHHHHhChHHHHHH-HHhCCCCcCc--ccCCcccCCCCEEEEE
Confidence 9999999999999 999999999999999999999999999999999887 5889996311 0012357999999999
Q ss_pred eCChhhHHHHHHHhhCCCE-EEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCC
Q 007040 169 GRSASARALATRSLSFKMS-VLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPG 247 (620)
Q Consensus 169 GlG~IG~~vA~~LkafG~~-V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~g 247 (620)
|+|+||+.+|++|++|||+ |++||++..........++....++++++++||+|++|+|++++|+++|+++.|+.||+|
T Consensus 171 G~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~g 250 (364)
T 2j6i_A 171 GAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKG 250 (364)
T ss_dssp CCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCTT
T ss_pred CcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCCC
Confidence 9999999999999999997 999998774433222345555568999999999999999999999999999999999999
Q ss_pred cEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCC-CCCCCccccCC--C---cEEEcCCCCCCcHHHHHHHHHHHHHH
Q 007040 248 AFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREM--P---NVLILPRSADYSEEVWMEIRDKAISV 321 (620)
Q Consensus 248 AiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~-P~~~~spL~~~--p---NVIlTPHiAg~T~ea~~~~~~~a~en 321 (620)
++|||+|||+++|+++|+++|++|+|+||+||||++ |++.++|||.+ | ||++|||+|++|.++..++...+++|
T Consensus 251 a~lIn~arG~~vd~~aL~~aL~~g~i~gA~LDVf~~EP~~~~~pL~~~~~~~~~nvilTPHia~~t~e~~~~~~~~~~~n 330 (364)
T 2j6i_A 251 AWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQTRYAQGTVNI 330 (364)
T ss_dssp EEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCHHHHCCCTTSCCEEECCSCGGGSHHHHHHHHHHHHHH
T ss_pred CEEEECCCCchhCHHHHHHHHHcCCCcEEEEecCCCCCCCCCChHHhccCCccCcEEECCccCcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999997 66789999999 9 99999999999999999999999999
Q ss_pred HHHHHHcCC---CCCccccCCCCccCC
Q 007040 322 LQTFFFDGV---IPKNAISDTEGCENE 345 (620)
Q Consensus 322 L~~~L~~G~---~p~nvVn~~~~y~~~ 345 (620)
|.+|+ +|+ .|.|+|+...+|.+-
T Consensus 331 l~~~~-~g~~~~~~~n~v~~~~~y~~~ 356 (364)
T 2j6i_A 331 LESFF-TGKFDYRPQDIILLNGEYGTK 356 (364)
T ss_dssp HHHHH-TTCCCCCGGGEEEBTTBC---
T ss_pred HHHHH-cCCCCCCCCceecCCcCcchh
Confidence 99997 787 689999999999774
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-57 Score=478.48 Aligned_cols=275 Identities=21% Similarity=0.265 Sum_probs=247.0
Q ss_pred cccccceEEEEecCCCCCHHHHhcCCC--CeEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhc
Q 007040 55 GKIEAAAAVLLHSLAYLPRAAQRRLRP--YQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRR 132 (620)
Q Consensus 55 ~~l~~AdaVlv~s~~~l~~e~l~~lp~--LK~I~~~gaG~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rr 132 (620)
+.++++|+++++....+++++++++|+ ||||++.|+|+|+||+++|.++||.|+|+||+++++||||+++++|++.|+
T Consensus 42 ~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~ 121 (333)
T 1j4a_A 42 ALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQ 121 (333)
T ss_dssp GGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCcEEEEcCCCCCCHHHHHhccccCCeEEEECCcccccccHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHHcC
Confidence 457899999998767899999999988 999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCH
Q 007040 133 THLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTL 212 (620)
Q Consensus 133 l~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL 212 (620)
++.+++. .+++.|.... ....++.|++|||||+|.||+.+|++|++|||+|++||++..... ...+....++
T Consensus 122 ~~~~~~~-~~~g~w~~~~----~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~---~~~~~~~~~l 193 (333)
T 1j4a_A 122 DKAMDEK-VARHDLRWAP----TIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPEL---EKKGYYVDSL 193 (333)
T ss_dssp HHHHHHH-HHTTBCCCTT----CCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHH---HHTTCBCSCH
T ss_pred HHHHHHH-HHcCCCccCC----cccccCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchhH---HhhCeecCCH
Confidence 9999887 5788885321 123679999999999999999999999999999999999874321 1112333489
Q ss_pred HhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCC---CCC-
Q 007040 213 NDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQ---WME- 288 (620)
Q Consensus 213 ~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~---~~~- 288 (620)
++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++|| +.+
T Consensus 194 ~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~l~~~~ 273 (333)
T 1j4a_A 194 DDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDW 273 (333)
T ss_dssp HHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTCTTTTTSBC
T ss_pred HHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999744 333
Q ss_pred ------c----cccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCccccC
Q 007040 289 ------A----WVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISD 338 (620)
Q Consensus 289 ------s----pL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~p~nvVn~ 338 (620)
+ |||++|||++|||+|++|.++..++.+.+++||.+|+ +|++|.|+||.
T Consensus 274 ~~~~~~~p~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~-~g~~~~~~v~~ 332 (333)
T 1j4a_A 274 EGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNMVVKAFDNNLELV-EGKEAETPVKV 332 (333)
T ss_dssp TTSCCSCHHHHHHHHCTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHH-TTCCCSSBCCC
T ss_pred ccccCCccchhhHHhCCCEEECCccccCHHHHHHHHHHHHHHHHHHHH-cCCCCCccccC
Confidence 2 6999999999999999999999999999999999996 88889999975
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-57 Score=477.97 Aligned_cols=275 Identities=21% Similarity=0.270 Sum_probs=247.5
Q ss_pred cccccceEEEEecCCCCCHHHHhcCCC--CeEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhc
Q 007040 55 GKIEAAAAVLLHSLAYLPRAAQRRLRP--YQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRR 132 (620)
Q Consensus 55 ~~l~~AdaVlv~s~~~l~~e~l~~lp~--LK~I~~~gaG~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rr 132 (620)
+.++++|++++++..++++++++++|+ ||||++.|+|+|+||+++|.++||.|+|+|++++.+||||++++||++.|+
T Consensus 40 ~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~ 119 (333)
T 1dxy_A 40 EWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRN 119 (333)
T ss_dssp GGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCeEEEEcCCCCCCHHHHHhCcccCceEEEEcCcccCccCHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHhhh
Confidence 457899999998777899999999988 999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhCCCCC-CCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCC
Q 007040 133 THLLARHALSASGWLG-SVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDT 211 (620)
Q Consensus 133 l~~~~~~~~~~g~W~~-~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~s 211 (620)
++.+++. .+++.|.. .. ....++.|++|||||+|.||+.+|++|++|||+|++||++..... .... ...+
T Consensus 120 ~~~~~~~-~~~g~w~~~~~----~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~---~~~~-~~~~ 190 (333)
T 1dxy_A 120 MGKVQAQ-LQAGDYEKAGT----FIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGD---HPDF-DYVS 190 (333)
T ss_dssp HHHHHHH-HHTTCHHHHTC----CCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSC---CTTC-EECC
T ss_pred HHHHHHH-HHcCCcccccC----CCccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchhh---Hhcc-ccCC
Confidence 9999887 57888842 11 123579999999999999999999999999999999999875431 1122 3458
Q ss_pred HHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCC------
Q 007040 212 LNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQ------ 285 (620)
Q Consensus 212 L~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~------ 285 (620)
+++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++||
T Consensus 191 l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~ 270 (333)
T 1dxy_A 191 LEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNL 270 (333)
T ss_dssp HHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTHHHHHHHH
T ss_pred HHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCccEEEEecCCCCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999744
Q ss_pred -----CCC---ccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCccccCC
Q 007040 286 -----WME---AWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDT 339 (620)
Q Consensus 286 -----~~~---spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~p~nvVn~~ 339 (620)
..+ +|||++|||++|||+|++|.++..++.+.+++||.+|+ +|++|.|+||..
T Consensus 271 ~~~~~~~~~~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~nl~~~~-~g~~~~~~v~~~ 331 (333)
T 1dxy_A 271 AKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFL-TKGETSTEVTGP 331 (333)
T ss_dssp HHHSSCCCHHHHHHHTCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHH-HHSCCTTEECC-
T ss_pred ccccccCccchhHHhcCCCEEECCccccChHHHHHHHHHHHHHHHHHHH-cCCCCCceeCCC
Confidence 122 58999999999999999999999999999999999997 788899999864
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-57 Score=478.16 Aligned_cols=307 Identities=17% Similarity=0.197 Sum_probs=256.8
Q ss_pred CCCEEEEeCCCCCChhHHhhccCC-ceEEecCCCC--CcccccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCCc
Q 007040 18 PLPSVVALNCIEDCVLEQDSLAGV-ALVEHVPLGR--LADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRT 94 (620)
Q Consensus 18 ~kPkVvvL~~~ed~~~~~~~L~~l-~~v~~~~~~~--l~e~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D~ 94 (620)
.+++|++..... +...+.|+.. .++...+... ...+.++++|++++++...+++++++++|+||||++.|+|+|+
T Consensus 25 ~~~~vli~~~~~--~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~ 102 (335)
T 2g76_A 25 NLRKVLISDSLD--PCCRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDN 102 (335)
T ss_dssp -CCEEEECSCCC--HHHHHHHHHHTCEEEECCSCCHHHHHHHGGGCSEEEECSSSCBCHHHHHHCSSCCEEEESSSSCTT
T ss_pred cceEEEEcCCCC--HHHHHHHHhCCCEEEECCCCCHHHHHHHhcCceEEEEcCCCCCCHHHHhhCCCCcEEEECCCCcch
Confidence 346777766532 2233444433 3444432111 1124568899999987778999999999999999999999999
Q ss_pred cchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhh
Q 007040 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASA 174 (620)
Q Consensus 95 VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG 174 (620)
||+++|.++||.|+|+|++++.+||||+++++|++.|+++.+++. .+++.|.... ....++.|++|||||+|.||
T Consensus 103 id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~-~~~g~W~~~~----~~~~~l~g~tvgIIGlG~IG 177 (335)
T 2g76_A 103 VDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATAS-MKDGKWERKK----FMGTELNGKTLGILGLGRIG 177 (335)
T ss_dssp BCHHHHHHHTCEEECCSSTTHHHHHHHHHHHHHHHHHTHHHHHHH-HHTTCCCTGG----GCBCCCTTCEEEEECCSHHH
T ss_pred hChHHHHhCCeEEEECCCccchHHHHHHHHHHHHHHhchHHHHHH-HHcCCCCccC----CCCcCCCcCEEEEEeECHHH
Confidence 999999999999999999999999999999999999999999887 5889996421 12357999999999999999
Q ss_pred HHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcC
Q 007040 175 RALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 175 ~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvg 254 (620)
+.+|++|++|||+|++||++.... .....++.. .++++++++||+|++|||++++|+++|+++.|+.||+|++|||+|
T Consensus 178 ~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~g~~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~a 255 (335)
T 2g76_A 178 REVATRMQSFGMKTIGYDPIISPE-VSASFGVQQ-LPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCA 255 (335)
T ss_dssp HHHHHHHHTTTCEEEEECSSSCHH-HHHHTTCEE-CCHHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECS
T ss_pred HHHHHHHHHCCCEEEEECCCcchh-hhhhcCcee-CCHHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECC
Confidence 999999999999999999986432 122234433 589999999999999999999999999999999999999999999
Q ss_pred CChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCc
Q 007040 255 SSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKN 334 (620)
Q Consensus 255 RG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~p~n 334 (620)
||+++|+++|+++|++|+|+||+||||+.+|+.++|||++||||+|||+|++|.++..++.+.+++||.+|+ +|++|.|
T Consensus 256 rg~vvd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~L~~~~nvilTPH~~~~t~e~~~~~~~~~~~nl~~~~-~g~~~~n 334 (335)
T 2g76_A 256 RGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMV-KGKSLTG 334 (335)
T ss_dssp CTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCSCCHHHHSTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHC--------
T ss_pred CccccCHHHHHHHHHhCCccEEEEeecCCCCCCCchHHhCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHH-cCCCCCC
Confidence 999999999999999999999999999986678899999999999999999999999999999999999996 7887765
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-57 Score=486.07 Aligned_cols=279 Identities=24% Similarity=0.274 Sum_probs=250.1
Q ss_pred cccccceEEEEec--CCCCCHHHHhcCCCCeEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhc
Q 007040 55 GKIEAAAAVLLHS--LAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRR 132 (620)
Q Consensus 55 ~~l~~AdaVlv~s--~~~l~~e~l~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rr 132 (620)
+.+.++|++++.. ...+++++++++|+||||++.|+|+|+||+++|.++||.|+|+|++++.+||||++++||++.|+
T Consensus 85 ~~l~~ad~li~~~~~~~~i~~~~l~~~p~Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~~g~~~~~VAE~al~liL~~~R~ 164 (393)
T 2nac_A 85 RELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRN 164 (393)
T ss_dssp HHHTTCSEEEEBTTBCCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTCEEEECTTTTHHHHHHHHHHHHHHHHTT
T ss_pred HhccCCCEEEEcCccCCCCCHHHHhhCCCCcEEEEcCccccccCHHHHhcCCEEEEeCCCcccHHHHHHHHHHHHHHHhc
Confidence 4678999988763 34789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCH
Q 007040 133 THLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTL 212 (620)
Q Consensus 133 l~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL 212 (620)
+..+++. .+++.|..... .....+|.|++|||||+|+||+.+|++|++|||+|++||++..........++....++
T Consensus 165 ~~~~~~~-~~~g~W~~~~~--~~~~~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~~~l 241 (393)
T 2nac_A 165 YLPSHEW-ARKGGWNIADC--VSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATR 241 (393)
T ss_dssp HHHHHHH-HHTTCCCHHHH--HTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSH
T ss_pred cHHHHHH-HHcCCCCcccc--ccCCccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCceecCCH
Confidence 9988886 57899963110 01235799999999999999999999999999999999998644332222345555689
Q ss_pred HhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCC-CCCCCccc
Q 007040 213 NDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWV 291 (620)
Q Consensus 213 ~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~-P~~~~spL 291 (620)
++++++||+|++|||++++|+++|+++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++ |++.++||
T Consensus 242 ~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~pL 321 (393)
T 2nac_A 242 EDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPW 321 (393)
T ss_dssp HHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCSSSSCCTTCGG
T ss_pred HHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcCCeeEEEEEecCCCCCCCCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986 66789999
Q ss_pred cCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q 007040 292 REMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAIS 337 (620)
Q Consensus 292 ~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~p~nvVn 337 (620)
|++||||+|||+|++|.++..++...+++||.+|+ .|+++.|.|+
T Consensus 322 ~~~~nvilTPHia~~T~e~~~~~~~~~~~nl~~~~-~G~~~~~~~~ 366 (393)
T 2nac_A 322 RTMPYNGMTPHISGTTLTAQARYAAGTREILECFF-EGRPIRDEYL 366 (393)
T ss_dssp GTSTTBCCCCSCTTCSHHHHHHHHHHHHHHHHHHH-HTCCCCGGGE
T ss_pred HcCCCEEECCCCCcCcHHHHHHHHHHHHHHHHHHH-cCCCCcceeE
Confidence 99999999999999999999999999999999997 7888888765
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-57 Score=473.85 Aligned_cols=274 Identities=23% Similarity=0.289 Sum_probs=246.2
Q ss_pred cccccceEEEEecCCCCCHHHHhcCCC--CeEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhc
Q 007040 55 GKIEAAAAVLLHSLAYLPRAAQRRLRP--YQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRR 132 (620)
Q Consensus 55 ~~l~~AdaVlv~s~~~l~~e~l~~lp~--LK~I~~~gaG~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rr 132 (620)
+.++++|+++++....+++++++++|+ ||+|++.|+|+|+||+++|+++||.|+|+||+++.+||||++++||++.|+
T Consensus 41 ~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~ 120 (331)
T 1xdw_A 41 EMAAGFDAVILRGNCFANKQNLDIYKKLGVKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRH 120 (331)
T ss_dssp HTTTTCSEEEECTTCCBCHHHHHHHHHHTCCEEEESSSCCTTBCHHHHHHTTCCEECCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCeEEEEeCCCCCCHHHHhhCcccCceEEEEccccccccCHHHHHhCCcEEEeCCCCCcHHHHHHHHHHHHHHHhC
Confidence 457899999998777899999999998 999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCH
Q 007040 133 THLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTL 212 (620)
Q Consensus 133 l~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL 212 (620)
++.+++. .+++.|.... . ....++.|++|||||+|.||+.+|++|++|||+|++||++..... ... ....++
T Consensus 121 ~~~~~~~-~~~g~w~~~~-~--~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~---~~~-~~~~~l 192 (331)
T 1xdw_A 121 TAYTTSR-TAKKNFKVDA-F--MFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKGI---EDY-CTQVSL 192 (331)
T ss_dssp HHHHHHH-HTTTCCCCCS-T--TCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSC---TTT-CEECCH
T ss_pred HHHHHHH-HHcCCCcccc-C--cCccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHHH---Hhc-cccCCH
Confidence 9999887 5788885211 1 123579999999999999999999999999999999999875431 112 234589
Q ss_pred HhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCC---CC--
Q 007040 213 NDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQ---WM-- 287 (620)
Q Consensus 213 ~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~---~~-- 287 (620)
++++++||+|++|||++++|+++|+++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++|| +.
T Consensus 193 ~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~ 272 (331)
T 1xdw_A 193 DEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDL 272 (331)
T ss_dssp HHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTGGGTTTCCC
T ss_pred HHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHHhCCceEEEEecCCCCCCcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999743 22
Q ss_pred -----C----ccccCC-CcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q 007040 288 -----E----AWVREM-PNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAIS 337 (620)
Q Consensus 288 -----~----spL~~~-pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~p~nvVn 337 (620)
+ +|||++ |||++|||+|++|.++..++.+.+++||.+|+ +|++|.|+||
T Consensus 273 ~~~~~~~~~~~~L~~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~-~g~~~~~~v~ 331 (331)
T 1xdw_A 273 EGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNMVEVSYQNLKDLA-ETGDCPNKIK 331 (331)
T ss_dssp TTSCCSSHHHHHHHHTTTTEEECCSCTTCSHHHHHHHHHHHHHHHHHHH-HHSCCTTBCC
T ss_pred cccccCccchHHHHhCCCCEEEcCccccChHHHHHHHHHHHHHHHHHHH-cCCCCCCCCC
Confidence 2 379999 99999999999999999999999999999997 7888889886
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-56 Score=467.32 Aligned_cols=310 Identities=20% Similarity=0.261 Sum_probs=266.6
Q ss_pred CCCCCEEEEeCCCCCChhHHhhccCCceEEecCCC-CC---cccccccceEEEEecCCCCCHHHHhcCCCCeEEEEeccc
Q 007040 16 PTPLPSVVALNCIEDCVLEQDSLAGVALVEHVPLG-RL---ADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSS 91 (620)
Q Consensus 16 ~~~kPkVvvL~~~ed~~~~~~~L~~l~~v~~~~~~-~l---~e~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG 91 (620)
.|.+|+|++..... +...+.|+...++..+... .. ..+.++++|++++++...+++++++++|+||||++.|+|
T Consensus 20 ~m~~~~vl~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~~G 97 (333)
T 3ba1_A 20 HMEAIGVLMMCPMS--TYLEQELDKRFKLFRYWTQPAQRDFLALQAESIRAVVGNSNAGADAELIDALPKLEIVSSFSVG 97 (333)
T ss_dssp --CCCEEEECSCCC--HHHHHHHHHHSEEEEGGGCSSHHHHHHHHTTTEEEEEECSSSCBCHHHHHHCTTCCEEEESSSC
T ss_pred cCCCCEEEEeCCCC--HHHHHHHHhcCCEEEecCCCChHHHHHHHhCCCEEEEEcCCCCCCHHHHhhCCCCcEEEEcCcc
Confidence 35568888876532 3334455554555544321 11 123467899999877678999999999999999999999
Q ss_pred CCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCC
Q 007040 92 DRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRS 171 (620)
Q Consensus 92 ~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG 171 (620)
+|+||+++|.++||.|+|+||+++.+||||++++||+++|++..+++. .+++.|..... ....+++|++|||||+|
T Consensus 98 ~d~id~~~~~~~gI~v~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~-~~~g~w~~~~~---~~~~~l~g~~vgIIG~G 173 (333)
T 3ba1_A 98 LDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKY-VRRGAWKFGDF---KLTTKFSGKRVGIIGLG 173 (333)
T ss_dssp CTTBCHHHHHHHTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHH-HHTTGGGGCCC---CCCCCCTTCCEEEECCS
T ss_pred ccccCHHHHHhCCcEEEECCCcchHHHHHHHHHHHHHHHhCHHHHHHH-HHcCCCCcccc---ccccccCCCEEEEECCC
Confidence 999999999999999999999999999999999999999999999887 58899963211 12357999999999999
Q ss_pred hhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEE
Q 007040 172 ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLV 251 (620)
Q Consensus 172 ~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLI 251 (620)
.||+.+|++|++|||+|++||++..... +.....++++++++||+|++|+|++++|+++|+++.|+.||+|++||
T Consensus 174 ~iG~~vA~~l~~~G~~V~~~dr~~~~~~-----g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailI 248 (333)
T 3ba1_A 174 RIGLAVAERAEAFDCPISYFSRSKKPNT-----NYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLI 248 (333)
T ss_dssp HHHHHHHHHHHTTTCCEEEECSSCCTTC-----CSEEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEE
T ss_pred HHHHHHHHHHHHCCCEEEEECCCchhcc-----CceecCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEE
Confidence 9999999999999999999999875422 34445789999999999999999999999999999999999999999
Q ss_pred EcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCC
Q 007040 252 NTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVI 331 (620)
Q Consensus 252 NvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~ 331 (620)
|++||.++|+++|+++|++|+++||+||||+++|.+.+|||++||||+|||+|++|.++..++.+.+++||.+|+ +|++
T Consensus 249 n~srG~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~L~~~~nviltPH~~~~t~e~~~~~~~~~~~nl~~~~-~g~~ 327 (333)
T 3ba1_A 249 NIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLEAHF-SGKP 327 (333)
T ss_dssp ECSCGGGBCHHHHHHHHHHTSSCEEEESCCTTTTCCCGGGGGCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHH-HTCC
T ss_pred ECCCCchhCHHHHHHHHHcCCCeEEEEecCCCCCCCcchhhcCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHH-cCCC
Confidence 999999999999999999999999999999975555599999999999999999999999999999999999997 7888
Q ss_pred CCcccc
Q 007040 332 PKNAIS 337 (620)
Q Consensus 332 p~nvVn 337 (620)
|.|.||
T Consensus 328 ~~~~Vn 333 (333)
T 3ba1_A 328 LLTPVV 333 (333)
T ss_dssp CSSBCC
T ss_pred CCCCCC
Confidence 999886
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-56 Score=462.15 Aligned_cols=304 Identities=27% Similarity=0.314 Sum_probs=260.5
Q ss_pred CEEEEeCCCCCChhHHhhccCC-ceEEecCCCCCc----ccccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCCc
Q 007040 20 PSVVALNCIEDCVLEQDSLAGV-ALVEHVPLGRLA----DGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRT 94 (620)
Q Consensus 20 PkVvvL~~~ed~~~~~~~L~~l-~~v~~~~~~~l~----e~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D~ 94 (620)
|+|++.....+. ..+.|+.. .++........+ .+.++++|+++++....+++++++++|+||||++.|+|+|+
T Consensus 1 ~~vl~~~~~~~~--~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~ 78 (311)
T 2cuk_A 1 MRVLVTRTLPGK--ALDRLRERGLEVEVHRGLFLPKAELLKRVEGAVGLIPTVEDRIDAEVMDRAKGLKVIACYSVGVDH 78 (311)
T ss_dssp CEEEESSCCSSS--TTHHHHHTTCEEEECCSSCCCHHHHHHHHTTCSEEECCTTSCBCHHHHHHSTTCCEEECSSSCCTT
T ss_pred CEEEEeCCCCHH--HHHHHHhcCCeEEEecCCCCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhCCCCeEEEECCcCccc
Confidence 456665544332 22334443 465544322222 24578899999887668999999999999999999999999
Q ss_pred cchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhh
Q 007040 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASA 174 (620)
Q Consensus 95 VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG 174 (620)
||+++|.++||.|+|+||+++.+||||++++||+++|+++.+++. .+++.|.... +......++.|++|||||+|.||
T Consensus 79 id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~-~~~g~w~~~~-~~~~~~~~l~g~~vgIIG~G~IG 156 (311)
T 2cuk_A 79 VDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAY-ARDGLWKAWH-PELLLGLDLQGLTLGLVGMGRIG 156 (311)
T ss_dssp BCHHHHHTTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHH-HHTTCCCCCC-TTTTCBCCCTTCEEEEECCSHHH
T ss_pred cCHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHcChHHHHHH-HHcCCCCccc-cccccCcCCCCCEEEEEEECHHH
Confidence 999999999999999999999999999999999999999999887 5889996311 11112357999999999999999
Q ss_pred HHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcC
Q 007040 175 RALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 175 ~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvg 254 (620)
+.+|++|++|||+|++||++..... + ...++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|
T Consensus 157 ~~~A~~l~~~G~~V~~~d~~~~~~~------~-~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~s 229 (311)
T 2cuk_A 157 QAVAKRALAFGMRVVYHARTPKPLP------Y-PFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTA 229 (311)
T ss_dssp HHHHHHHHHTTCEEEEECSSCCSSS------S-CBCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECS
T ss_pred HHHHHHHHHCCCEEEEECCCCcccc------c-ccCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECC
Confidence 9999999999999999999875432 1 24689999999999999999999999999999999999999999999
Q ss_pred CChhhcHHHHHHHHHcCCcceeEeecCCC-CCCCCccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 007040 255 SSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPK 333 (620)
Q Consensus 255 RG~vVDe~AL~~AL~~G~I~GAaLDV~E~-P~~~~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~p~ 333 (620)
||.++|+++|.++|+ |+|+||+||||++ |++.++|||++||||+|||+|++|.++..++.+.+++||.+|+ +|++|.
T Consensus 230 rg~~vd~~aL~~aL~-g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~~~~~~~nl~~~~-~g~~~~ 307 (311)
T 2cuk_A 230 RGALVDTEALVEALR-GHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVENLLAVL-EGREPP 307 (311)
T ss_dssp CGGGBCHHHHHHHHT-TTSSEEEESSCSSSSCCTTSGGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHH-TTCCCS
T ss_pred CCCccCHHHHHHHHh-CcCCEEEEeeCCCCCCCCCChhhhCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHH-cCCCCC
Confidence 999999999999999 9999999999996 6588999999999999999999999999999999999999997 888888
Q ss_pred ccc
Q 007040 334 NAI 336 (620)
Q Consensus 334 nvV 336 (620)
|+|
T Consensus 308 ~~v 310 (311)
T 2cuk_A 308 NPV 310 (311)
T ss_dssp SBC
T ss_pred Ccc
Confidence 776
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-55 Score=461.32 Aligned_cols=308 Identities=21% Similarity=0.221 Sum_probs=262.1
Q ss_pred CEEEEeCCCCCChhHHhhccCCceEEecCCCC-Cc----ccccccceEEEEecCCCCCHHHHhcCCC-CeEEEEecccCC
Q 007040 20 PSVVALNCIEDCVLEQDSLAGVALVEHVPLGR-LA----DGKIEAAAAVLLHSLAYLPRAAQRRLRP-YQLILCLGSSDR 93 (620)
Q Consensus 20 PkVvvL~~~ed~~~~~~~L~~l~~v~~~~~~~-l~----e~~l~~AdaVlv~s~~~l~~e~l~~lp~-LK~I~~~gaG~D 93 (620)
++|++.... .....+.|+...++....... .+ .+.++++|+++++....+++++++++|+ ||||++.|+|+|
T Consensus 2 ~~vl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~Lk~I~~~~~G~d 79 (320)
T 1gdh_A 2 KKILITWPL--PEAAMARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFD 79 (320)
T ss_dssp CEEEESSCC--CHHHHHHHHTTSEEEECCSTTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHSCTTCCEEEEESSCCT
T ss_pred cEEEEcCCC--CHHHHHHHHhcCCEEEecCCCCCCHHHHHHHhcCCEEEEECCCCCCCHHHHHhCCccceEEEECCcccc
Confidence 466666543 233355566655665543221 22 2457889999988766899999999999 999999999999
Q ss_pred ccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChh
Q 007040 94 TVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSAS 173 (620)
Q Consensus 94 ~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~I 173 (620)
+||+++|.++||.|+|+||+++.+||||++++||++.|+++.+++. .+++.|.... +......++.|++|||||+|.|
T Consensus 80 ~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~-~~~g~w~~~~-~~~~~~~~l~g~~vgIIG~G~I 157 (320)
T 1gdh_A 80 HIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKM-IRTRSWPGWE-PLELVGEKLDNKTLGIYGFGSI 157 (320)
T ss_dssp TBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHTTHHHHHHH-HHTTCCCCCC-TTTTCBCCCTTCEEEEECCSHH
T ss_pred cccHHHHHhCCcEEEEcCCCCHHHHHHHHHHHHHHHHccHHHHHHH-HHcCCCCccc-cccccCcCCCCCEEEEECcCHH
Confidence 9999999999999999999999999999999999999999999887 5889996321 1112235899999999999999
Q ss_pred hHHHHHHHhhCCCEEEEECC-CCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEE
Q 007040 174 ARALATRSLSFKMSVLYFDV-PEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVN 252 (620)
Q Consensus 174 G~~vA~~LkafG~~V~~~dr-~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLIN 252 (620)
|+.+|++|++|||+|++||+ +.... .....++....++++++++||+|++|+|++++|+++|+++.|+.||+|++|||
T Consensus 158 G~~~A~~l~~~G~~V~~~d~~~~~~~-~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn 236 (320)
T 1gdh_A 158 GQALAKRAQGFDMDIDYFDTHRASSS-DEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVN 236 (320)
T ss_dssp HHHHHHHHHTTTCEEEEECSSCCCHH-HHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEE
T ss_pred HHHHHHHHHHCCCEEEEECCCCcChh-hhhhcCcEEcCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEE
Confidence 99999999999999999999 76432 12223444445899999999999999999999999999999999999999999
Q ss_pred cCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCC
Q 007040 253 TGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIP 332 (620)
Q Consensus 253 vgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~p 332 (620)
+|||+++|+++|.++|++|+|+||+||||+.+|+.++|||++||||+|||++++|.++..++.+.+ +||.+|+ +|++|
T Consensus 237 ~arg~~vd~~aL~~aL~~g~i~gA~lDv~~~eP~~~~~L~~~~nviltPH~~~~t~~~~~~~~~~~-~nl~~~~-~g~~~ 314 (320)
T 1gdh_A 237 TARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQAREDMAHQA-NDLIDAL-FGGAD 314 (320)
T ss_dssp CSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECSSCTTCBHHHHHHHHHHH-HHHHHHH-HTTSC
T ss_pred CCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCCChhhhCCCEEECCcCCcCcHHHHHHHHHHH-HHHHHHH-cCCCC
Confidence 999999999999999999999999999999755889999999999999999999999999999999 9999997 77765
Q ss_pred Cc
Q 007040 333 KN 334 (620)
Q Consensus 333 ~n 334 (620)
..
T Consensus 315 ~~ 316 (320)
T 1gdh_A 315 MS 316 (320)
T ss_dssp CT
T ss_pred cc
Confidence 43
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-56 Score=460.68 Aligned_cols=301 Identities=19% Similarity=0.249 Sum_probs=255.3
Q ss_pred CCEEEEeCCCCCChhHHhhccCC-ceEEecCCCC--CcccccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCCcc
Q 007040 19 LPSVVALNCIEDCVLEQDSLAGV-ALVEHVPLGR--LADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTV 95 (620)
Q Consensus 19 kPkVvvL~~~ed~~~~~~~L~~l-~~v~~~~~~~--l~e~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D~V 95 (620)
+++|++..... ....+.|+.. .++......+ ...+.++++|+++++....+++++++++|+||||++.|+|+|+|
T Consensus 3 ~~~il~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i 80 (307)
T 1wwk_A 3 RMKVLVAAPLH--EKAIQVLKDAGLEVIYEEYPDEDRLVELVKDVEAIIVRSKPKVTRRVIESAPKLKVIARAGVGLDNI 80 (307)
T ss_dssp -CEEEECSCCC--HHHHHHHHHTTCEEEECSSCCHHHHHHHSTTCSEEEESSCSCBCHHHHTTCTTCCEEEESSSCCTTB
T ss_pred ceEEEEeCCCC--HHHHHHHHhCCeEEEeCCCCCHHHHHHHhcCCEEEEEcCCCCCCHHHHhhCCCCeEEEECCcccccc
Confidence 45777776532 2223344432 2343321111 11245788999998876679999999999999999999999999
Q ss_pred chHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhH
Q 007040 96 DSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASAR 175 (620)
Q Consensus 96 D~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~ 175 (620)
|+++|.++||.|+|+||+++.+||||+++++|+++|+++.+++. .+++.|.... ....++.|++|||||+|.||+
T Consensus 81 d~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~-~~~g~w~~~~----~~~~~l~g~~vgIiG~G~IG~ 155 (307)
T 1wwk_A 81 DVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRK-MREGVWAKKE----AMGIELEGKTIGIIGFGRIGY 155 (307)
T ss_dssp CHHHHHHHTCEEECCGGGGHHHHHHHHHHHHHHHHTTHHHHHHH-HTTTCCCTTT----CCBCCCTTCEEEEECCSHHHH
T ss_pred CHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHH-HHcCCCCccC----cCCcccCCceEEEEccCHHHH
Confidence 99999999999999999999999999999999999999999887 5889996421 123689999999999999999
Q ss_pred HHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCC
Q 007040 176 ALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 176 ~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgR 255 (620)
.+|++|++|||+|++||++... ......++.. .++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+||
T Consensus 156 ~~A~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~-~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~ar 233 (307)
T 1wwk_A 156 QVAKIANALGMNILLYDPYPNE-ERAKEVNGKF-VDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSR 233 (307)
T ss_dssp HHHHHHHHTTCEEEEECSSCCH-HHHHHTTCEE-CCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSC
T ss_pred HHHHHHHHCCCEEEEECCCCCh-hhHhhcCccc-cCHHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCC
Confidence 9999999999999999998754 2122234433 4899999999999999999999999999999999999999999999
Q ss_pred ChhhcHHHHHHHHHcCCcceeEeecCCC-CCCCCccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcC
Q 007040 256 SQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDG 329 (620)
Q Consensus 256 G~vVDe~AL~~AL~~G~I~GAaLDV~E~-P~~~~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G 329 (620)
|+++|+++|+++|++|+|+||+||||++ |++.++|||++||||+|||+|++|.++..++.+.+++||.+|+ +|
T Consensus 234 g~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~~~~~~~nl~~~~-~g 307 (307)
T 1wwk_A 234 GPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAGVEVAEKVVKIL-KG 307 (307)
T ss_dssp GGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHH-TC
T ss_pred CcccCHHHHHHHHHhCCCcEEEEecCCCCCCCCCChHHhCCCEEECCccccCcHHHHHHHHHHHHHHHHHHH-cC
Confidence 9999999999999999999999999996 6668999999999999999999999999999999999999997 54
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-56 Score=468.28 Aligned_cols=321 Identities=18% Similarity=0.218 Sum_probs=266.7
Q ss_pred CCCEEEEeCC-CCCChhHHhhccCCceEEecCCCCCc--ccccc-----cceEEEEe------cCCCCCHHHHhcCC-CC
Q 007040 18 PLPSVVALNC-IEDCVLEQDSLAGVALVEHVPLGRLA--DGKIE-----AAAAVLLH------SLAYLPRAAQRRLR-PY 82 (620)
Q Consensus 18 ~kPkVvvL~~-~ed~~~~~~~L~~l~~v~~~~~~~l~--e~~l~-----~AdaVlv~------s~~~l~~e~l~~lp-~L 82 (620)
++|+|+++.. ........+.|+...++..++..+.. .+.+. ++|+++.. ....+++++++++| +|
T Consensus 2 ~~~~vl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (348)
T 2w2k_A 2 PRPRVLLLGDPARHLDDLWSDFQQKFEVIPANLTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHLPSSL 81 (348)
T ss_dssp CCCEEEECSSCCSSCHHHHHHHHHHSEEEECCCCCHHHHHHHHHTTTTCCCSEEEECSTTTTGGGCCBCHHHHTTSCTTC
T ss_pred CCcEEEEECCccccChHHHHHHHhcceEEecCCCCHHHHHHHhhhcccCCeEEEEEcccccccccCCCCHHHHHhcccCc
Confidence 4678888876 43233344555554566554321111 12333 77887764 24579999999998 59
Q ss_pred eEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCC---CCCCCCCCCCccee
Q 007040 83 QLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASG---WLGSVQPLCRGMRR 159 (620)
Q Consensus 83 K~I~~~gaG~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~---W~~~~~~~~~~~~~ 159 (620)
|||++.|+|+|+||+++|+++||.|+|+||+++.+||||++++||+++|+++.+++. .+++. |............+
T Consensus 82 k~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAe~~~~l~L~~~R~~~~~~~~-~~~g~~~~w~~~~~~~~~~~~~ 160 (348)
T 2w2k_A 82 KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERA-ARTGDPETFNRVHLEIGKSAHN 160 (348)
T ss_dssp CEEEESSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHH-HTTCCHHHHHHHHHHHHTTCCC
T ss_pred eEEEECCccccccCHHHHHhCCcEEEECCCCCcHHHHHHHHHHHHHHHhChHHHHHH-HHcCCCcccccccccccccCcC
Confidence 999999999999999999999999999999999999999999999999999999887 57888 93210000011357
Q ss_pred ecCcEEEEEeCChhhHHHHHHHh-hCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 160 CRGLVLGIVGRSASARALATRSL-SFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~Lk-afG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
++|++|||||+|.||+.+|++|+ +|||+|++||++..........++....++++++++||+|++|+|++++|+++|++
T Consensus 161 l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~li~~ 240 (348)
T 2w2k_A 161 PRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDE 240 (348)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGGGTTCBCH
T ss_pred CCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChHHHHHhhH
Confidence 99999999999999999999999 99999999999875433222224444458999999999999999999999999999
Q ss_pred HHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEEEcCCCCCCcHHHHHHHHHHH
Q 007040 239 ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKA 318 (620)
Q Consensus 239 ~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a 318 (620)
+.++.||+|++|||++||+++|+++|.++|++|+|.||++|||+++|..++||+++||||+|||+|++|.++..++.+.+
T Consensus 241 ~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~~~~L~~~~nviltPH~~~~t~e~~~~~~~~~ 320 (348)
T 2w2k_A 241 AFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGVAIETFHEFERLT 320 (348)
T ss_dssp HHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTTTSCCHHHHTSSSEEECCSCTTCSHHHHHHHHHHH
T ss_pred HHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCCCCCCCchhhcCCCEEEcCcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999866778899999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCccccCCC
Q 007040 319 ISVLQTFFFDGVIPKNAISDTE 340 (620)
Q Consensus 319 ~enL~~~L~~G~~p~nvVn~~~ 340 (620)
++||.+|+ +|+.|.|+||.+.
T Consensus 321 ~~ni~~~~-~g~~~~~~v~~~~ 341 (348)
T 2w2k_A 321 MTNIDRFL-LQGKPLLTPAGKV 341 (348)
T ss_dssp HHHHHHHH-HTCCCCSSBCSCC
T ss_pred HHHHHHHH-cCCCCcceecccc
Confidence 99999997 6777999998754
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-55 Score=459.53 Aligned_cols=271 Identities=17% Similarity=0.191 Sum_probs=245.9
Q ss_pred cccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccH
Q 007040 55 GKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTH 134 (620)
Q Consensus 55 ~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~ 134 (620)
+.++++|+++++. .+.++++++|+||||++.|+|+|+||++++ ++||.|+|+||+++.+||||++++||+++|+++
T Consensus 27 ~~~~~~d~~i~~~---~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~-~~gi~v~~~~~~~~~~vAE~~~~~~L~~~R~~~ 102 (303)
T 1qp8_A 27 GDLGNVEAALVSR---ITAEELAKMPRLKFIQVVTAGLDHLPWESI-PPHVTVAGNAGSNADAVAEFALALLLAPYKRII 102 (303)
T ss_dssp SCCTTBCCCCBSC---CCHHHHHHCTTCCCEEBSSSCCTTSCCTTS-CTTSCEECCCSSSHHHHHHHHHHHHHHHHTTHH
T ss_pred hhhCCCEEEEECC---CCHHHHhhCCCCcEEEECCcCcccccHHHH-hcCCEEEECCCCCchHHHHHHHHHHHHHHhCHH
Confidence 4578899888764 467999999999999999999999999985 789999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHh
Q 007040 135 LLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLND 214 (620)
Q Consensus 135 ~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~e 214 (620)
.+++. .+++.|.... ...++.|++|||||+|.||+.+|++|++|||+|++||++.. .. +.....++++
T Consensus 103 ~~~~~-~~~g~w~~~~-----~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~-~~-----~~~~~~~l~e 170 (303)
T 1qp8_A 103 QYGEK-MKRGDYGRDV-----EIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK-EG-----PWRFTNSLEE 170 (303)
T ss_dssp HHHHH-HHTTCCCCCS-----CCCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC-CS-----SSCCBSCSHH
T ss_pred HHHHH-HHcCCCCCCC-----CCCCCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc-cc-----CcccCCCHHH
Confidence 99887 5889996431 22479999999999999999999999999999999999875 11 2334568999
Q ss_pred hhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecC-CC-CCCCCcccc
Q 007040 215 LLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGA-EG-PQWMEAWVR 292 (620)
Q Consensus 215 LL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~-E~-P~~~~spL~ 292 (620)
++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+|||| ++ |++.++|||
T Consensus 171 ll~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~~~~ep~~~~~~L~ 250 (303)
T 1qp8_A 171 ALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFF 250 (303)
T ss_dssp HHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTCCGGGHHHH
T ss_pred HHhhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEeccCCCCCCCCCCChhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 64 666789999
Q ss_pred CCCcEEEcCCCCCC--cHHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCcc
Q 007040 293 EMPNVLILPRSADY--SEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTEGCE 343 (620)
Q Consensus 293 ~~pNVIlTPHiAg~--T~ea~~~~~~~a~enL~~~L~~G~~p~nvVn~~~~y~ 343 (620)
++||||+|||+|++ |.++..++.+.+++||.+|+ +|++|.|+||++ .|.
T Consensus 251 ~~~nviltPH~~~~~~t~e~~~~~~~~~~~nl~~~~-~g~~~~~~v~~~-~y~ 301 (303)
T 1qp8_A 251 SLPNVVATPWVAGGYGNERVWRQMVMEAVRNLITYA-TGGRPRNIAKRE-DYI 301 (303)
T ss_dssp TSTTEEECCSCSSSSSCHHHHHHHHHHHHHHHHHHH-TTSCCSCBCCGG-GTC
T ss_pred cCCCEEECCCcCCCCCCHHHHHHHHHHHHHHHHHHH-cCCCCCceeCHH-HcC
Confidence 99999999999998 99999999999999999997 888899999977 464
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-54 Score=457.20 Aligned_cols=315 Identities=22% Similarity=0.271 Sum_probs=267.9
Q ss_pred CCEEEEeCCCCCChhHHhhccCCceEEecCCC-CCc----ccccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCC
Q 007040 19 LPSVVALNCIEDCVLEQDSLAGVALVEHVPLG-RLA----DGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDR 93 (620)
Q Consensus 19 kPkVvvL~~~ed~~~~~~~L~~l~~v~~~~~~-~l~----e~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D 93 (620)
+++|++.... .....+.|....++..+... ..+ .+.+.++|+++++....+++++++++|+||||++.|+|+|
T Consensus 2 ~~~il~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d 79 (334)
T 2dbq_A 2 KPKVFITREI--PEVGIKMLEDEFEVEVWGDEKEIPREILLKKVKEVDALVTMLSERIDKEVFENAPKLRIVANYAVGYD 79 (334)
T ss_dssp CCEEEESSCC--CHHHHHHHHTTSEEEECCCSSCCCHHHHHHHTTSCSEEEECTTSCBCHHHHHTCTTCCEEEESSSCCT
T ss_pred CcEEEEecCC--CHHHHHHHHhcCCEEEecCCCCCCHHHHHHHhcCcEEEEEcCCCCCCHHHHhhCCCceEEEECCcccc
Confidence 4577776543 23334556655566554432 122 2356889999998767899999999999999999999999
Q ss_pred ccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCC---CCCCCCCcceeecCcEEEEEeC
Q 007040 94 TVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLG---SVQPLCRGMRRCRGLVLGIVGR 170 (620)
Q Consensus 94 ~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~---~~~~~~~~~~~L~GktVGIIGl 170 (620)
+||+++|.++||.|+|+||+++.+||||++++||+++|+++.+++. .+++.|.. ...+......++.|++|||||+
T Consensus 80 ~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~-~~~~~w~~~~~~~~~~~~~~~~l~g~~vgIIG~ 158 (334)
T 2dbq_A 80 NIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRF-VRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGL 158 (334)
T ss_dssp TBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHTHHHHHHH-HHTSHHHHTTCCCCTTTTCCCCCTTCEEEEECC
T ss_pred cccHHHHHhCCCEEEeCCCcCHHHHHHHHHHHHHHHHhCHHHHHHH-HHcCCCcccccccccccccccCCCCCEEEEEcc
Confidence 9999999999999999999999999999999999999999999887 57888951 1111111235799999999999
Q ss_pred ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEE
Q 007040 171 SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFL 250 (620)
Q Consensus 171 G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiL 250 (620)
|.||+.+|++|++||++|++||++... ......+.. ..++++++++||+|++|+|.+++|+++|+++.++.||+|++|
T Consensus 159 G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~-~~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ail 236 (334)
T 2dbq_A 159 GRIGQAIAKRAKGFNMRILYYSRTRKE-EVERELNAE-FKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAIL 236 (334)
T ss_dssp SHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHHCCE-ECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEE
T ss_pred CHHHHHHHHHHHhCCCEEEEECCCcch-hhHhhcCcc-cCCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEE
Confidence 999999999999999999999998754 211122333 358999999999999999999999999999999999999999
Q ss_pred EEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCC
Q 007040 251 VNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGV 330 (620)
Q Consensus 251 INvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~ 330 (620)
||+|||.++|+++|.++|++|+|+||++|||+++|+.++|||.+||||+|||+|++|.++..++.+.+++||.+|+ +|+
T Consensus 237 In~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~EP~~~~~L~~~~~vi~tPh~~~~t~~~~~~~~~~~~~n~~~~~-~g~ 315 (334)
T 2dbq_A 237 INIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGAREGMAELVAKNLIAFK-RGE 315 (334)
T ss_dssp EECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCCHHHHHCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHH-TTC
T ss_pred EECCCCcccCHHHHHHHHHhCCeeEEEecCCCCCCCCCchhhcCCCEEECCccCCCcHHHHHHHHHHHHHHHHHHH-cCC
Confidence 9999999999999999999999999999999976678899999999999999999999999999999999999996 888
Q ss_pred CCCccccCC
Q 007040 331 IPKNAISDT 339 (620)
Q Consensus 331 ~p~nvVn~~ 339 (620)
+|.|+||++
T Consensus 316 ~~~~~v~~~ 324 (334)
T 2dbq_A 316 IPPTLVNRE 324 (334)
T ss_dssp CCTTBSCTT
T ss_pred CCccccCHH
Confidence 899999865
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-55 Score=455.61 Aligned_cols=268 Identities=16% Similarity=0.185 Sum_probs=243.4
Q ss_pred cccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccH
Q 007040 55 GKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTH 134 (620)
Q Consensus 55 ~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~ 134 (620)
+.++++|+++++...++++++++++|+||||++.|+|+|+||+++|.++||.|+|+||+++.+||||++++||++.|+++
T Consensus 42 ~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~ 121 (313)
T 2ekl_A 42 NIIGNYDIIVVRSRTKVTKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMY 121 (313)
T ss_dssp HHGGGCSEEEECSSSCBCHHHHHHCTTCCEEEECSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHH
T ss_pred HHhcCCeEEEEcCCCCCCHHHHhhCCCCeEEEEcCCCCCccCHHHHHhCCeEEEeCCCCCchHHHHHHHHHHHHHHhCHH
Confidence 45788999998766679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHh
Q 007040 135 LLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLND 214 (620)
Q Consensus 135 ~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~e 214 (620)
.+++. .+++.|.. ....++.|++|||||+|+||+.+|++|++|||+|++||++..... ....++.. .++++
T Consensus 122 ~~~~~-~~~g~w~~------~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~~g~~~-~~l~e 192 (313)
T 2ekl_A 122 TSMAL-AKSGIFKK------IEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREK-AEKINAKA-VSLEE 192 (313)
T ss_dssp HHHHH-HHTTCCCC------CCCCCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHHH-HHHTTCEE-CCHHH
T ss_pred HHHHH-HHcCCCCC------CCCCCCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchhH-HHhcCcee-cCHHH
Confidence 99887 58899962 123579999999999999999999999999999999999875421 22234443 48999
Q ss_pred hhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCc---cc
Q 007040 215 LLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEA---WV 291 (620)
Q Consensus 215 LL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~s---pL 291 (620)
++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|+++|.++|++|+|+||+||||+++|.+++ ||
T Consensus 193 ll~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~~~L 272 (313)
T 2ekl_A 193 LLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELEL 272 (313)
T ss_dssp HHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCEEEEEESCCSSSSCCSHHHHHH
T ss_pred HHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCCcEEEEecCCCCCCCCcccchH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997554577 99
Q ss_pred cCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCC
Q 007040 292 REMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIP 332 (620)
Q Consensus 292 ~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~p 332 (620)
|++||||+|||+|++|.++..++.+.+++||.+|+ +|+++
T Consensus 273 ~~~~nviltPH~~~~t~~~~~~~~~~~~~n~~~~~-~g~~l 312 (313)
T 2ekl_A 273 LKHERVIVTTHIGAQTKEAQKRVAEMTTQNLLNAM-KELGM 312 (313)
T ss_dssp HHSTTEEECCSCTTCSHHHHHHHHHHHHHHHHHHH-HHTTC
T ss_pred hhCCCEEECCccCcCcHHHHHHHHHHHHHHHHHHH-cCCCC
Confidence 99999999999999999999999999999999997 77754
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-54 Score=452.37 Aligned_cols=312 Identities=22% Similarity=0.333 Sum_probs=266.3
Q ss_pred CCEEEEeCCCCCChhHHhhccCCceEEecCCCCCc----ccccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCCc
Q 007040 19 LPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLA----DGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRT 94 (620)
Q Consensus 19 kPkVvvL~~~ed~~~~~~~L~~l~~v~~~~~~~l~----e~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D~ 94 (620)
+|+|++...+. ....+.|+...++...+ ... .+.++++|++++++...+++++++++|+||||++.|+|+|+
T Consensus 2 ~~~il~~~~~~--~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~ 77 (333)
T 2d0i_A 2 RPKVGVLLKMK--REALEELKKYADVEIIL--YPSGEELKGVIGRFDGIIVSPTTKITREVLENAERLKVISCHSAGYDN 77 (333)
T ss_dssp CSEEEECSCCC--HHHHHHHHTTSEEEECC--SCCHHHHHHHGGGCSEEEECTTSCBCHHHHTTCTTCCEEEESSSCCTT
T ss_pred CcEEEEECCCC--HHHHHHHHhcCCEEEeC--CCCHHHHHHHhcCCEEEEECCCCCCCHHHHhhCCCceEEEECCccccc
Confidence 57888876532 33345566655665543 122 24578899999887778999999999999999999999999
Q ss_pred cchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCC---cceeecCcEEEEEeCC
Q 007040 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCR---GMRRCRGLVLGIVGRS 171 (620)
Q Consensus 95 VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~---~~~~L~GktVGIIGlG 171 (620)
||+++|.++||.|+|+||+++.+||||+++++|+++|+++.+++. .+++.|.... .... ...++.|++|||||+|
T Consensus 78 id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~-~~~g~w~~~~-~~~~~~~~~~~l~g~~vgIIG~G 155 (333)
T 2d0i_A 78 IDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKF-IRRGEWESHA-KIWTGFKRIESLYGKKVGILGMG 155 (333)
T ss_dssp BCHHHHHHTTCEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHHHH-HHTTCCCCHH-HHHTTSCCCCCSTTCEEEEECCS
T ss_pred ccHHHHHhCCcEEEeCCCcChHHHHHHHHHHHHHHHhHHHHHHHH-HHcCCCCcCc-ccccCCcccCCCCcCEEEEEccC
Confidence 999999999999999999999999999999999999999999887 5889995310 0001 1157999999999999
Q ss_pred hhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEE
Q 007040 172 ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLV 251 (620)
Q Consensus 172 ~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLI 251 (620)
.||+.+|++|++|||+|++||++... ......++.. .++++++++||+|++|+|.+++|+++|+++.++.||+| +||
T Consensus 156 ~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~-~~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ili 232 (333)
T 2d0i_A 156 AIGKAIARRLIPFGVKLYYWSRHRKV-NVEKELKARY-MDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLV 232 (333)
T ss_dssp HHHHHHHHHHGGGTCEEEEECSSCCH-HHHHHHTEEE-CCHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEE
T ss_pred HHHHHHHHHHHHCCCEEEEECCCcch-hhhhhcCcee-cCHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEE
Confidence 99999999999999999999998754 2112223433 48999999999999999999999999999999999999 999
Q ss_pred EcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCC-cEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCC
Q 007040 252 NTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMP-NVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGV 330 (620)
Q Consensus 252 NvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~p-NVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~ 330 (620)
|+|||.++|+++|.++|++|+|+||++|||+++|.+++|||++| |||+|||+|++|.++..++.+.+++||.+|+ +|+
T Consensus 233 n~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~~~~L~~~~~nviltPh~~~~t~~~~~~~~~~~~~n~~~~~-~g~ 311 (333)
T 2d0i_A 233 NIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQEDVGFRAVENLLKVL-RGE 311 (333)
T ss_dssp ECSCGGGBCHHHHHHHHHTTCBCEEEESCCSSSSCSCCGGGGCTTTEEECCSCTTCCHHHHHHHHHHHHHHHHHHH-TTC
T ss_pred ECCCCcccCHHHHHHHHHcCCceEEEecCCCCCCCCCchHHcCCCCEEEcCccCCCcHHHHHHHHHHHHHHHHHHH-cCC
Confidence 99999999999999999999999999999997443389999999 9999999999999999999999999999997 888
Q ss_pred CCCccccCCC
Q 007040 331 IPKNAISDTE 340 (620)
Q Consensus 331 ~p~nvVn~~~ 340 (620)
+|.|+||++.
T Consensus 312 ~~~~~v~~~~ 321 (333)
T 2d0i_A 312 VPEDLVNKEV 321 (333)
T ss_dssp CCTTBSCTTH
T ss_pred CCcCccCHHH
Confidence 8999998653
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-53 Score=447.05 Aligned_cols=315 Identities=18% Similarity=0.182 Sum_probs=266.7
Q ss_pred CCCEEEEeCCCCCChhHHhhccCC--ceEEecCCC-CCc----ccccccceEEEEecCCCCCHHHHhcC-CCCeEEEEec
Q 007040 18 PLPSVVALNCIEDCVLEQDSLAGV--ALVEHVPLG-RLA----DGKIEAAAAVLLHSLAYLPRAAQRRL-RPYQLILCLG 89 (620)
Q Consensus 18 ~kPkVvvL~~~ed~~~~~~~L~~l--~~v~~~~~~-~l~----e~~l~~AdaVlv~s~~~l~~e~l~~l-p~LK~I~~~g 89 (620)
++++|++.... .....+.|+.. .++..++.. ..+ .+.++++|+++++....+++++++++ |+||||++.|
T Consensus 7 ~~~~il~~~~~--~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~Lk~I~~~~ 84 (330)
T 2gcg_A 7 RLMKVFVTRRI--PAEGRVALARAADCEVEQWDSDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVISTMS 84 (330)
T ss_dssp CCEEEEESSCC--CHHHHHHHHHCTTEEEEECCSSSCCCHHHHHHHHTTCSEEEECTTSCBCHHHHHHHCTTCCEEEESS
T ss_pred CCCEEEEECCC--CHHHHHHHHhcCCceEEEecCCCCCCHHHHHHHhcCCeEEEECCCCCCCHHHHHhcCCCceEEEECC
Confidence 35677776543 22334445543 455544321 122 13467899999877668999999999 9999999999
Q ss_pred ccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEe
Q 007040 90 SSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVG 169 (620)
Q Consensus 90 aG~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIG 169 (620)
+|+|+||+++|.++||.|+|+||+++.+||||+++++|+++|++..+++. .+++.|.... +......++.|++|||||
T Consensus 85 ~G~d~id~~~~~~~gi~v~n~~~~~~~~vAe~~~~~~L~~~R~~~~~~~~-~~~~~w~~~~-~~~~~~~~l~g~~vgIIG 162 (330)
T 2gcg_A 85 VGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEE-VKNGGWTSWK-PLWLCGYGLTQSTVGIIG 162 (330)
T ss_dssp SCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHH-HHTTCCCSCC-TTSSCBCCCTTCEEEEEC
T ss_pred cccccccHHHHHhCCceEEeCCCCChHHHHHHHHHHHHHHHhCHHHHHHH-HHcCCCcccC-cccccCcCCCCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999887 5889996421 111223689999999999
Q ss_pred CChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcE
Q 007040 170 RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAF 249 (620)
Q Consensus 170 lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAi 249 (620)
+|.||+.+|+.|++||++|++||++..........+.... ++++++++||+|++|+|.+++|+++|+++.++.||+|++
T Consensus 163 ~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gai 241 (330)
T 2gcg_A 163 LGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFV-STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAV 241 (330)
T ss_dssp CSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEEC-CHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCTTCE
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCceeC-CHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCCCcE
Confidence 9999999999999999999999987643322222344444 899999999999999999999999999999999999999
Q ss_pred EEEcCCChhhcHHHHHHHHHcCCcceeEeecCCC-CCCCCccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHc
Q 007040 250 LVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFD 328 (620)
Q Consensus 250 LINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~-P~~~~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~ 328 (620)
|||++||.++|+++|.++|++|+|.||+||||++ |++.++|||++||||+|||+|++|.++..++...+++||.+|+ +
T Consensus 242 lIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~epl~~~~~l~~~~nvi~tPh~~~~t~~~~~~~~~~~~~n~~~~~-~ 320 (330)
T 2gcg_A 242 FINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGL-R 320 (330)
T ss_dssp EEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHH-H
T ss_pred EEECCCCcccCHHHHHHHHHcCCccEEEeCCCCCCCCCCCChhhcCCCEEECCCCCCCcHHHHHHHHHHHHHHHHHHH-c
Confidence 9999999999999999999999999999999987 6688999999999999999999999999999999999999997 7
Q ss_pred CCCCCccccC
Q 007040 329 GVIPKNAISD 338 (620)
Q Consensus 329 G~~p~nvVn~ 338 (620)
|++|.|+||.
T Consensus 321 g~~~~~~v~~ 330 (330)
T 2gcg_A 321 GEPMPSELKL 330 (330)
T ss_dssp TCCCTTEECC
T ss_pred CCCCCCCCCC
Confidence 8889999974
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-54 Score=458.14 Aligned_cols=276 Identities=20% Similarity=0.265 Sum_probs=243.8
Q ss_pred EEEEeCCCCCChhHHhhccCCceEEecCCCCCcccccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCCccchHHH
Q 007040 21 SVVALNCIEDCVLEQDSLAGVALVEHVPLGRLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALA 100 (620)
Q Consensus 21 kVvvL~~~ed~~~~~~~L~~l~~v~~~~~~~l~e~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D~VD~~aa 100 (620)
||++.+.. +...+.++.+.++..++...+..+.+.++|++++++.+++++++++ .++||||++.|+|+|+||+++|
T Consensus 5 kIl~~~~~---p~~~~~~~~~~~v~~~~~~~~~~~~l~~ad~li~~~~~~v~~~ll~-~~~Lk~I~~~~~G~D~iD~~~~ 80 (381)
T 3oet_A 5 KILVDENM---PYARELFSRLGEVKAVPGRPIPVEELNHADALMVRSVTKVNESLLS-GTPINFVGTATAGTDHVDEAWL 80 (381)
T ss_dssp EEEEETTS---TTHHHHHTTSSEEEEECC---CHHHHTTCSEEEECTTSCBSHHHHT-TSCCCEEEESSSCCTTBCHHHH
T ss_pred EEEECCCC---cHHHHHHhhCCcEEEeCCCCCCHHHHCCCEEEEECCCCCCCHHHHc-CCCCEEEEEccccccccCHHHH
Confidence 67776543 3356778888888877766666677899999999988889999999 5679999999999999999999
Q ss_pred HhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHH
Q 007040 101 ADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATR 180 (620)
Q Consensus 101 ~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~ 180 (620)
.++||.|+|+||+++.+||||+++++|++.|+. ..+++|++|||||+|+||+++|++
T Consensus 81 ~~~gI~v~n~pg~~~~~VAE~~l~~lL~l~r~~-----------------------g~~l~gktvGIIGlG~IG~~vA~~ 137 (381)
T 3oet_A 81 KQAGIGFSAAPGCNAIAVVEYVFSALLMLAERD-----------------------GFSLRDRTIGIVGVGNVGSRLQTR 137 (381)
T ss_dssp HHTTCEEECCTTTTHHHHHHHHHHHHHHHHHHT-----------------------TCCGGGCEEEEECCSHHHHHHHHH
T ss_pred HhCCEEEEECCCcCcchhHHHHHHHHHHHHHhc-----------------------CCccCCCEEEEEeECHHHHHHHHH
Confidence 999999999999999999999999999999752 135899999999999999999999
Q ss_pred HhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChh----hHhhcCHHHhhccCCCcEEEEcCCC
Q 007040 181 SLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDE----TIQIINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 181 LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~----T~~lI~~~~L~~MK~gAiLINvgRG 256 (620)
|++|||+|++||++..... ......++++++++||+|++|+|+|++ |+++|+++.|+.||+|++|||+|||
T Consensus 138 l~a~G~~V~~~d~~~~~~~-----~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG 212 (381)
T 3oet_A 138 LEALGIRTLLCDPPRAARG-----DEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRG 212 (381)
T ss_dssp HHHTTCEEEEECHHHHHTT-----CCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCG
T ss_pred HHHCCCEEEEECCChHHhc-----cCcccCCHHHHHhhCCEEEEcCcCCccccccchhhcCHHHHhcCCCCcEEEECCCC
Confidence 9999999999998642211 122356899999999999999999999 9999999999999999999999999
Q ss_pred hhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCC
Q 007040 257 QLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGV 330 (620)
Q Consensus 257 ~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~ 330 (620)
++||++||+++|++|+|.||+||||++||.++.+||.++ +|+|||+||+|.|+..++..++++||.+|| +|.
T Consensus 213 ~vvde~aL~~aL~~g~i~gA~LDV~e~EP~~~~~L~~~~-~i~TPHiag~t~e~~~~~~~~~~~~l~~~l-~~~ 284 (381)
T 3oet_A 213 PVVDNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAV-DIGTSHIAGYTLEGKARGTTQVFEAYSAFI-GRE 284 (381)
T ss_dssp GGBCHHHHHHHHHTTCCEEEEESCCTTTTSCCHHHHHHS-SEECSSCTTCCHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred cccCHHHHHHHHHhCCCeEEEeeccccCCCCcchhhhCC-EEECCccCcCcHHHHHHHHHHHHHHHHHHH-cCC
Confidence 999999999999999999999999998666778899874 899999999999999999999999999996 554
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-53 Score=437.72 Aligned_cols=253 Identities=18% Similarity=0.181 Sum_probs=226.4
Q ss_pred cccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccH
Q 007040 55 GKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTH 134 (620)
Q Consensus 55 ~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~ 134 (620)
+.++++|+++++. ..+ ++|+||||++.|+|+|+||+++|++++|.++| ++.++.+||||++++||++.|++.
T Consensus 30 ~~~~~ad~li~~~-~~~------~~~~Lk~I~~~~~G~d~id~~~~~~~~~~~~~-~~~~~~~vAE~~~~~~L~~~R~~~ 101 (290)
T 3gvx_A 30 PDYYDAEAQVIKD-RYV------LGKRTKMIQAISAGVDHIDVNGIPENVVLCSN-AGAYSISVAEHAFALLLAHAKNIL 101 (290)
T ss_dssp TSCCCCSEEEESS-CCC------CCSSCCEEEECSSCCTTSCGGGSCTTSEEECC-HHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred cchhhhhhhhhhh-hhh------hhhhhHHHHHHhcCCceeecCCCccceEEeec-CCcceeeHHHHHHHHHHHHHHhhh
Confidence 4678899998843 232 78999999999999999999999987665555 588999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHh
Q 007040 135 LLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLND 214 (620)
Q Consensus 135 ~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~e 214 (620)
.+++. .+++.|.... ..+++|++|||||+|.||+++|++|++|||+|++||++...... .....++++
T Consensus 102 ~~~~~-~~~g~w~~~~------~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-----~~~~~~l~e 169 (290)
T 3gvx_A 102 ENNEL-MKAGIFRQSP------TTLLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV-----DVISESPAD 169 (290)
T ss_dssp HHHHH-HHTTCCCCCC------CCCCTTCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC-----SEECSSHHH
T ss_pred hhhhH-hhhcccccCC------ceeeecchheeeccCchhHHHHHHHHhhCcEEEEEecccccccc-----ccccCChHH
Confidence 99987 5889997532 25799999999999999999999999999999999998754331 334569999
Q ss_pred hhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCC
Q 007040 215 LLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREM 294 (620)
Q Consensus 215 LL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~ 294 (620)
++++||+|++|+|+|++|+++|+.+.|+.||+|++|||+|||+++|+++|+++|++|+|.||+||||+++|. +|||++
T Consensus 170 ll~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~--~pL~~~ 247 (290)
T 3gvx_A 170 LFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPE--ITETNL 247 (290)
T ss_dssp HHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTS--CCSCCC
T ss_pred HhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccCCcc--cchhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999998655 899999
Q ss_pred CcEEEcCCCC-CCcHHHHHHHHHHHHHHHHHHHHcCC
Q 007040 295 PNVLILPRSA-DYSEEVWMEIRDKAISVLQTFFFDGV 330 (620)
Q Consensus 295 pNVIlTPHiA-g~T~ea~~~~~~~a~enL~~~L~~G~ 330 (620)
||||+|||+| ++|.++.+++.+.+++||.+|+ +|+
T Consensus 248 ~nvilTPHiag~~t~e~~~~~~~~~~~ni~~~~-~~~ 283 (290)
T 3gvx_A 248 RNAILSPHVAGGMSGEIMDIAIQLAFENVRNFF-EGE 283 (290)
T ss_dssp SSEEECCSCSSCBTTBCCHHHHHHHHHHHHHHT-C--
T ss_pred hhhhcCccccCCccchHHHHHHHHHHHHHHhhh-cCC
Confidence 9999999999 9999999999999999999996 665
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-51 Score=458.90 Aligned_cols=311 Identities=22% Similarity=0.259 Sum_probs=269.8
Q ss_pred CCEEEEeCCCCCChhHHhhccCCceEEecCCCCC--cccccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCCccc
Q 007040 19 LPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRL--ADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVD 96 (620)
Q Consensus 19 kPkVvvL~~~ed~~~~~~~L~~l~~v~~~~~~~l--~e~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D~VD 96 (620)
+++|++.+... +...+.|+...++...+.... ..+.+.++|++++++.+.+++++++++|+||||+++|+|+|+||
T Consensus 4 ~~~vl~~~~~~--~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id 81 (529)
T 1ygy_A 4 LPVVLIADKLA--PSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVD 81 (529)
T ss_dssp CCEEEECSSCC--GGGGTTSCSSSEEEECCTTSHHHHHHHGGGCSEEEECSSSCBCHHHHHTCTTCCEEEESSSCCTTBC
T ss_pred CcEEEEeCCCC--HHHHHHHhcCceEEEcCCCCHHHHHHHhcCCEEEEEcCCCCCCHHHHhhCCCCcEEEECCcCcCccC
Confidence 56788876542 223445665556665542111 12457899999998878899999999999999999999999999
Q ss_pred hHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHH
Q 007040 97 SALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARA 176 (620)
Q Consensus 97 ~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~ 176 (620)
+++|+++||.|+|+|++++.+||||++++||+++|+++.++.. .+++.|.... ....+++|++|||||+|.||++
T Consensus 82 ~~~~~~~gi~v~n~p~~~~~~vAE~~~~~~l~~~R~~~~~~~~-~~~g~w~~~~----~~~~~l~g~~vgIIG~G~IG~~ 156 (529)
T 1ygy_A 82 VDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADAS-LREHTWKRSS----FSGTEIFGKTVGVVGLGRIGQL 156 (529)
T ss_dssp HHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHTTHHHHHHH-HHTTCCCGGG----CCBCCCTTCEEEEECCSHHHHH
T ss_pred HhHHHhCCeEEEECCCcchHHHHHHHHHHHHHHHhhhHHHHHH-HHhCCCcccC----cCccccCCCEEEEEeeCHHHHH
Confidence 9999999999999999999999999999999999999999887 5899997431 1235799999999999999999
Q ss_pred HHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCC
Q 007040 177 LATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 177 vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG 256 (620)
+|++|++|||+|++||++... ......|+... ++++++++||+|++|+|.+++|.++|+.+.++.||+|++|||+|||
T Consensus 157 vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~~~-~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg 234 (529)
T 1ygy_A 157 VAQRIAAFGAYVVAYDPYVSP-ARAAQLGIELL-SLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARG 234 (529)
T ss_dssp HHHHHHTTTCEEEEECTTSCH-HHHHHHTCEEC-CHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCT
T ss_pred HHHHHHhCCCEEEEECCCCCh-hHHHhcCcEEc-CHHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCC
Confidence 999999999999999998732 22223344444 8999999999999999999999999999999999999999999999
Q ss_pred hhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCccc
Q 007040 257 QLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAI 336 (620)
Q Consensus 257 ~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~p~nvV 336 (620)
.++|+.+|+++|++|+|+||++|||+.+|+.++|||++||||+|||+++.|.++.+++...+++||.+|+ .|.++.|+|
T Consensus 235 ~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~vilTPh~~~~t~ea~~~~~~~~~~~l~~~l-~~~~~~~~v 313 (529)
T 1ygy_A 235 GLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLAL-AGEFVPDAV 313 (529)
T ss_dssp TSBCHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEEECSSCSSCBHHHHHHHHHHHHHHHHHHH-TTCCCTTBC
T ss_pred chhhHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCEEEccccCCCCHHHHHHHHHHHHHHHHHHH-cCCCCCccc
Confidence 9999999999999999999999999986678999999999999999999999999999999999999996 888889999
Q ss_pred cCC
Q 007040 337 SDT 339 (620)
Q Consensus 337 n~~ 339 (620)
|..
T Consensus 314 ~~~ 316 (529)
T 1ygy_A 314 NVG 316 (529)
T ss_dssp SCC
T ss_pred CCc
Confidence 876
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-51 Score=441.86 Aligned_cols=276 Identities=21% Similarity=0.263 Sum_probs=242.1
Q ss_pred EEEEeCCCCCChhHHhhccCCceEEecCCCCCcccccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCCccchHHH
Q 007040 21 SVVALNCIEDCVLEQDSLAGVALVEHVPLGRLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALA 100 (620)
Q Consensus 21 kVvvL~~~ed~~~~~~~L~~l~~v~~~~~~~l~e~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D~VD~~aa 100 (620)
+|++.+..+ ...+.++...++..++..++..+.++++|++++++.+.+++++++ +|+||||++.|+|+|+||+++|
T Consensus 2 kil~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~ad~li~~~~~~~~~~~l~-~~~Lk~I~~~~~G~D~iD~~~~ 77 (380)
T 2o4c_A 2 RILADENIP---VVDAFFADQGSIRRLPGRAIDRAALAEVDVLLVRSVTEVSRAALA-GSPVRFVGTCTIGTDHLDLDYF 77 (380)
T ss_dssp EEEEETTCT---THHHHHGGGSEEEEECGGGCSTTTTTTCSEEEECTTSCBCHHHHT-TSCCCEEEECSSCSTTBCHHHH
T ss_pred EEEEecCch---HHHHHHHhCCcEEEecCCcCChHHHCCcEEEEEcCCCCCCHHHhc-CCCceEEEEcCcccchhhHHHH
Confidence 566655432 234556666666665544455566889999999887789999999 9999999999999999999999
Q ss_pred HhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHH
Q 007040 101 ADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATR 180 (620)
Q Consensus 101 ~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~ 180 (620)
.++||.|+|+||+++.+||||++++||++.|++ . .++.|++|||||+|+||+.+|++
T Consensus 78 ~~~gI~v~n~pg~~~~~vAE~~l~~lL~l~r~~-------------~----------~~l~g~tvGIIGlG~IG~~vA~~ 134 (380)
T 2o4c_A 78 AEAGIAWSSAPGCNARGVVDYVLGCLLAMAEVR-------------G----------ADLAERTYGVVGAGQVGGRLVEV 134 (380)
T ss_dssp HHHTCEEECCTTTTHHHHHHHHHHHHHHHHHHH-------------T----------CCGGGCEEEEECCSHHHHHHHHH
T ss_pred HhCCCEEEeCCCcChHHHHHHHHHHHHHHHhhh-------------h----------cccCCCEEEEEeCCHHHHHHHHH
Confidence 999999999999999999999999999999862 1 25899999999999999999999
Q ss_pred HhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChh----hHhhcCHHHhhccCCCcEEEEcCCC
Q 007040 181 SLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDE----TIQIINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 181 LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~----T~~lI~~~~L~~MK~gAiLINvgRG 256 (620)
|++|||+|++||++.... ..+. ...++++++++||+|++|+|++++ |+++|+++.|+.||+|++|||+|||
T Consensus 135 l~~~G~~V~~~d~~~~~~----~~g~-~~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG 209 (380)
T 2o4c_A 135 LRGLGWKVLVCDPPRQAR----EPDG-EFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRG 209 (380)
T ss_dssp HHHTTCEEEEECHHHHHH----STTS-CCCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCG
T ss_pred HHHCCCEEEEEcCChhhh----ccCc-ccCCHHHHHHhCCEEEEeccCccccccchhhhcCHHHHhhCCCCcEEEECCCC
Confidence 999999999999865321 1122 346899999999999999999999 9999999999999999999999999
Q ss_pred hhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCC
Q 007040 257 QLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGV 330 (620)
Q Consensus 257 ~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~ 330 (620)
+++|+++|+++|++|+|.||+||||++||.++++|+. +||++|||+||+|.++..++...+++||.+|+ +|.
T Consensus 210 ~vvd~~aL~~aL~~g~i~~A~LDV~~~EP~~~~~l~~-~nvi~TPHiag~t~e~~~~~~~~~~~nl~~~l-~g~ 281 (380)
T 2o4c_A 210 AVVDNQALRRLLEGGADLEVALDVWEGEPQADPELAA-RCLIATPHIAGYSLEGKLRGTAQIYQAYCAWR-GIA 281 (380)
T ss_dssp GGBCHHHHHHHHHTTCCEEEEESCCTTTTSCCHHHHT-TCSEECSSCTTCCHHHHHHHHHHHHHHHHHHH-TCC
T ss_pred cccCHHHHHHHHHhCCCceEEeeeeccCCCCchhhcc-CCEEEccccCcCCHHHHHHHHHHHHHHHHHHH-cCC
Confidence 9999999999999999999999999986677888887 59999999999999999999999999999997 666
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.5e-33 Score=304.15 Aligned_cols=231 Identities=10% Similarity=0.013 Sum_probs=192.6
Q ss_pred CCCCeEEE-EecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcc
Q 007040 79 LRPYQLIL-CLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGM 157 (620)
Q Consensus 79 lp~LK~I~-~~gaG~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~ 157 (620)
+++++.|+ .+++|+|++ .+|.++||.++|++++++ +||| +++|++...... ...+ |.+. ..
T Consensus 191 ~~~l~gi~eet~~Gvd~l--~a~~~~Gilv~p~~~vn~-sVae-------~l~r~~~~~~~~-l~~g-w~r~------~~ 252 (479)
T 1v8b_A 191 AKKIIGVSEETTTGVLRL--KKMDKQNELLFTAINVND-AVTK-------QKYDNVYGCRHS-LPDG-LMRA------TD 252 (479)
T ss_dssp HTTCCEEEECSHHHHHHH--HHHHHTTCCCSEEEECTT-SHHH-------HTTHHHHHHHHH-HHHH-HHHH------HC
T ss_pred hcCeEEEEEeeCccHhHH--HHHHHcCCEEeccCCccH-HHHH-------HHHhchHhHHHH-Hhhh-hhhc------cc
Confidence 47888988 788999988 788999999999999999 9999 345776665554 3445 8531 12
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
.++.|++|||||+|.||+.+|++|++|||+|++||+++.........+.. ..++++++++||+|++|+ .|.++|+
T Consensus 253 ~~l~GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~-~~~l~ell~~aDiVi~~~----~t~~lI~ 327 (479)
T 1v8b_A 253 FLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFN-VVTLDEIVDKGDFFITCT----GNVDVIK 327 (479)
T ss_dssp CCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCE-ECCHHHHTTTCSEEEECC----SSSSSBC
T ss_pred cccCCCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCCE-ecCHHHHHhcCCEEEECC----ChhhhcC
Confidence 46899999999999999999999999999999999987442222333443 458999999999999995 6889999
Q ss_pred HHHhhccCCCcEEEEcCCChh-hcHHHHHH--HHHcCCcceeEeecCCCCCCCCccccCC--CcEEEcCCCC-CCcHH-H
Q 007040 238 AECLQHIKPGAFLVNTGSSQL-LDDCAVKQ--LLIDGTLAGCALDGAEGPQWMEAWVREM--PNVLILPRSA-DYSEE-V 310 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~v-VDe~AL~~--AL~~G~I~GAaLDV~E~P~~~~spL~~~--pNVIlTPHiA-g~T~e-a 310 (620)
.+.|+.||+|++|||+|||.+ ||+++|.+ +|++|+|+ +++|||+ ++.++|||.+ |||++| |+| +.+.+ .
T Consensus 328 ~~~l~~MK~gailiNvgrg~~EId~~aL~~~~AL~~g~I~-a~lDv~p--lp~~~~l~~l~~~nvv~t-H~atghp~e~~ 403 (479)
T 1v8b_A 328 LEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVK-PQVDRIT--LPNGNKIIVLARGRLLNL-GCATGHPAFVM 403 (479)
T ss_dssp HHHHTTCCTTCEEEECSSTTTSBCHHHHHTSTTCEEEEEE-TTEEEEE--CTTSCEEEEEGGGSBHHH-HSSCCSCHHHH
T ss_pred HHHHhhcCCCcEEEEeCCCCccccchhhhccccceeeeEe-eeEEEEE--CCCCCeeeEecCCCEEEE-eccCCCCchhH
Confidence 999999999999999999999 99999999 99999998 9999984 3457889888 999999 999 66655 6
Q ss_pred HHHHHHHHHHHHHHHHHcCC--CCCcccc
Q 007040 311 WMEIRDKAISVLQTFFFDGV--IPKNAIS 337 (620)
Q Consensus 311 ~~~~~~~a~enL~~~L~~G~--~p~nvVn 337 (620)
...+...+++|+..|+ +|. .+.|.|+
T Consensus 404 ~~s~a~~~~~ni~~~~-~g~~~~l~n~V~ 431 (479)
T 1v8b_A 404 SFSFCNQTFAQLDLWQ-NKDTNKYENKVY 431 (479)
T ss_dssp HHHHHHHHHHHHHHHH-TTTSSSCCSSEE
T ss_pred HHHHHHHHHHHHHHHH-cCCCCcCCcceE
Confidence 7788899999999996 666 6666554
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-33 Score=307.33 Aligned_cols=229 Identities=10% Similarity=0.012 Sum_probs=188.3
Q ss_pred CCCeEEE-EecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcce
Q 007040 80 RPYQLIL-CLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMR 158 (620)
Q Consensus 80 p~LK~I~-~~gaG~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~ 158 (620)
++++.|+ .+++|+|++ .+|.++||.|+|++++++ +|||+. +|++...... ...+ |.+. ...
T Consensus 212 ~~l~gi~eet~~Gvd~l--~a~~~~Gilv~n~~~vn~-sVae~l-------~r~~~~~~~~-l~~g-w~~~------~g~ 273 (494)
T 3d64_A 212 AHIKGVTEETTTGVHRL--YQMEKDGRLPFPAFNVND-SVTKSK-------FDNLYGCRES-LVDG-IKRA------TDV 273 (494)
T ss_dssp TTCCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHHH-------HHHHHHHHTT-HHHH-HHHH------HCC
T ss_pred hCcEEEEEEcccCHhhH--HHHHHCCCEEEECCCccH-HHHHHH-------HhhhHhhhhh-hhhh-hhhc------ccc
Confidence 7888888 788999988 788999999999999999 999954 3555433322 2333 6421 124
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
++.|++|||||+|.||+.+|++|++|||+|++||+++.........+.. ..++++++++||+|++|+ .|+++|+.
T Consensus 274 ~L~GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~-~~~l~ell~~aDiVi~~~----~t~~lI~~ 348 (494)
T 3d64_A 274 MIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYR-VVTMEYAADKADIFVTAT----GNYHVINH 348 (494)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCE-ECCHHHHTTTCSEEEECS----SSSCSBCH
T ss_pred ccCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCE-eCCHHHHHhcCCEEEECC----CcccccCH
Confidence 6899999999999999999999999999999999987432112223443 358999999999999998 58899999
Q ss_pred HHhhccCCCcEEEEcCCChh-hcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCC--CcEEEcCCCC-CCcHH-HHHH
Q 007040 239 ECLQHIKPGAFLVNTGSSQL-LDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREM--PNVLILPRSA-DYSEE-VWME 313 (620)
Q Consensus 239 ~~L~~MK~gAiLINvgRG~v-VDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~--pNVIlTPHiA-g~T~e-a~~~ 313 (620)
+.|+.||+|++|||+|||.+ ||+++| ++|++|+|+ +++|++ |++.++|||.+ |||++| |+| +.+.+ ....
T Consensus 349 ~~l~~MK~gAilINvgrg~veID~~aL-~AL~~g~I~-~~~Dv~--plp~~~pL~~l~~~nvv~t-H~atg~~~~~~~~~ 423 (494)
T 3d64_A 349 DHMKAMRHNAIVCNIGHFDSEIDVAST-RQYQWENIK-PQVDHI--IFPDGKRVILLAEGRLVNL-GCATGHPSFVMSNS 423 (494)
T ss_dssp HHHHHCCTTEEEEECSSSSCSBCCGGG-TTSEEEEEE-TTEEEE--ECTTSCEEEEEGGGSBHHH-HTSCCSCHHHHHHH
T ss_pred HHHhhCCCCcEEEEcCCCcchhchHHH-HhhhcCccc-eeEEEE--ECCCCCchhhcCCCCEEEE-eCcCCCCHHHHHHH
Confidence 99999999999999999999 699999 999999998 788886 55568899998 999999 999 65644 6788
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccc
Q 007040 314 IRDKAISVLQTFFFDGVIPKNAIS 337 (620)
Q Consensus 314 ~~~~a~enL~~~L~~G~~p~nvVn 337 (620)
+...+++|+..|+ +|..+.|.|+
T Consensus 424 ~a~~~~~ni~~~~-~g~~~~n~V~ 446 (494)
T 3d64_A 424 FTNQTLAQIELFT-RGGEYANKVY 446 (494)
T ss_dssp HHHHHHHHHHHHH-HGGGSCSSEE
T ss_pred HHHHHHHHHHHHH-cCCCCCCcee
Confidence 8999999999997 6666777774
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-25 Score=230.56 Aligned_cols=170 Identities=11% Similarity=0.043 Sum_probs=143.2
Q ss_pred cccccceEEEEe----------------cCCCCCHHHHhcCCCCeEEEEecccCCccch-HHHHhcCcEEEEcC------
Q 007040 55 GKIEAAAAVLLH----------------SLAYLPRAAQRRLRPYQLILCLGSSDRTVDS-ALAADLGLRLIHVD------ 111 (620)
Q Consensus 55 ~~l~~AdaVlv~----------------s~~~l~~e~l~~lp~LK~I~~~gaG~D~VD~-~aa~erGI~VtNtp------ 111 (620)
+.++++|+++++ ....+++++++++|+||+|+ +|+|++|+ ++|.++||.|+|+|
T Consensus 54 ~~~~~~d~ii~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~l~~i~---~G~d~id~~~~~~~~gi~v~~~~~~~~~~ 130 (293)
T 3d4o_A 54 VDWNTVDAILLPISGTNEAGKVDTIFSNESIVLTEEMIEKTPNHCVVY---SGISNTYLNQCMKKTNRTLVKLMERDDIA 130 (293)
T ss_dssp CCGGGCSEEECCTTCCCTTCBCCBSSCSCCCBCCHHHHHTSCTTCEEE---ESSCCHHHHHHHHHHTCEEEEGGGCHHHH
T ss_pred HHHhcCCEEEeccccccCCceeecccccCCccchHHHHHhCCCCCEEE---ecCCCHHHHHHHHHcCCeEEEecCCceee
Confidence 457789999885 23468999999999999987 79999998 89999999999998
Q ss_pred CCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEE
Q 007040 112 TSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYF 191 (620)
Q Consensus 112 g~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~ 191 (620)
++++.+|||++++++|... ..++.|++|||||+|.||+.+|++|++||++|++|
T Consensus 131 ~~~~~svae~a~~~~l~~~--------------------------~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~ 184 (293)
T 3d4o_A 131 IYNSIPTAEGTIMMAIQHT--------------------------DFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVG 184 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHC--------------------------SSCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred eeccHhHHHHHHHHHHHhc--------------------------CCCCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEE
Confidence 8999999999999988631 12579999999999999999999999999999999
Q ss_pred CCCCCCCCccccCCcee--cCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChh
Q 007040 192 DVPEGKGKVTFPSAARR--MDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQL 258 (620)
Q Consensus 192 dr~~~~~~~~~~~g~~~--~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~v 258 (620)
|++..........+... ..+++++++++|+|++|+|. ++++.+.|+.||+|++|||++||+.
T Consensus 185 dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-----~~i~~~~l~~mk~~~~lin~ar~~~ 248 (293)
T 3d4o_A 185 ARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPA-----LVVTANVLAEMPSHTFVIDLASKPG 248 (293)
T ss_dssp ESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECCSS-----CCBCHHHHHHSCTTCEEEECSSTTC
T ss_pred ECCHHHHHHHHHCCCeecChhhHHHHhcCCCEEEECCCh-----HHhCHHHHHhcCCCCEEEEecCCCC
Confidence 99864322111223332 35789999999999999996 6999999999999999999999764
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.1e-22 Score=205.49 Aligned_cols=176 Identities=13% Similarity=0.114 Sum_probs=136.0
Q ss_pred cccccceEEEEe----c----------CCC--CCHHHHhcCCCCeEEEEecccCCccc-hHHHHhcCcEEEEcCCCChHH
Q 007040 55 GKIEAAAAVLLH----S----------LAY--LPRAAQRRLRPYQLILCLGSSDRTVD-SALAADLGLRLIHVDTSRAEE 117 (620)
Q Consensus 55 ~~l~~AdaVlv~----s----------~~~--l~~e~l~~lp~LK~I~~~gaG~D~VD-~~aa~erGI~VtNtpg~~a~a 117 (620)
+.++++|+++++ . ..+ +++++++.+|++|+|+ +|+|++| +++|.++||.|+|+|+++ +
T Consensus 56 ~~~~~~d~ii~~~~~~~~~~~i~s~~a~~~~~~~~~~l~~~~~l~~i~---~g~~~~d~~~~~~~~gi~v~~~~~~~--~ 130 (300)
T 2rir_A 56 IPFQQIDSIILPVSATTGEGVVSTVFSNEEVVLKQDHLDRTPAHCVIF---SGISNAYLENIAAQAKRKLVKLFERD--D 130 (300)
T ss_dssp SCGGGCSEEECCSSCEETTTEECBSSCSSCEECCHHHHHTSCTTCEEE---ESSCCHHHHHHHHHTTCCEEEGGGSH--H
T ss_pred HHHhcCCEEEeccccccCCcccccccccCCccchHHHHhhcCCCCEEE---EecCCHHHHHHHHHCCCEEEeecCCC--c
Confidence 457789998872 1 235 7899999999999988 7899999 999999999999999974 3
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCC
Q 007040 118 IADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGK 197 (620)
Q Consensus 118 VAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~ 197 (620)
+ ++.|+++.. .+.|..... ....++.|++|||||+|.||+.+|+.|++||++|++||++...
T Consensus 131 v---------~~~r~~~~~------~g~~~~~~~---~~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~ 192 (300)
T 2rir_A 131 I---------AIYNSIPTV------EGTIMLAIQ---HTDYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAH 192 (300)
T ss_dssp H---------HHHHHHHHH------HHHHHHHHH---TCSSCSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred e---------EEEcCccHH------HHHHHHHHH---hcCCCCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence 3 234555433 223421100 1124689999999999999999999999999999999998643
Q ss_pred CCccccCCce--ecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChh
Q 007040 198 GKVTFPSAAR--RMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQL 258 (620)
Q Consensus 198 ~~~~~~~g~~--~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~v 258 (620)
.......+.. ...++++++++||+|++|+|. ++++++.|+.||+|++|||++||+.
T Consensus 193 ~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-----~~i~~~~~~~mk~g~~lin~a~g~~ 250 (300)
T 2rir_A 193 LARITEMGLVPFHTDELKEHVKDIDICINTIPS-----MILNQTVLSSMTPKTLILDLASRPG 250 (300)
T ss_dssp HHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSS-----CCBCHHHHTTSCTTCEEEECSSTTC
T ss_pred HHHHHHCCCeEEchhhHHHHhhCCCEEEECCCh-----hhhCHHHHHhCCCCCEEEEEeCCCC
Confidence 2211112332 235799999999999999997 6899999999999999999999864
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=5.7e-23 Score=226.51 Aligned_cols=225 Identities=11% Similarity=0.000 Sum_probs=173.1
Q ss_pred EEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCc
Q 007040 84 LILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGL 163 (620)
Q Consensus 84 ~I~~~gaG~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~Gk 163 (620)
++..+|+|+|++ .++.++||.++|++++++ +|||+. +|++...... ...+ |.+. ....+.|+
T Consensus 214 vveetgtGVd~l--~a~~~~Gilv~~~~~vn~-sVae~~-------~r~l~~~~~s-~~~g-~~r~------~~~~l~Gk 275 (494)
T 3ce6_A 214 VTEETTTGVLRL--YQFAAAGDLAFPAINVND-SVTKSK-------FDNKYGTRHS-LIDG-INRG------TDALIGGK 275 (494)
T ss_dssp EEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHHT-------THHHHHHHHH-HHHH-HHHH------HCCCCTTC
T ss_pred EEEEeCCChhHH--HHHHHcCCEEEecCCccH-HHHHHH-------Hhhhhhhhhh-hhHH-HHhc------cCCCCCcC
Confidence 344778999988 678899999999999999 999954 3333222211 1111 3211 01247899
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhc
Q 007040 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQH 243 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~ 243 (620)
+|+|||+|.||+.+|++|+++|++|+++|+++.....+...|.. ..++++++..+|+|++|++ +.++|+.+.|+.
T Consensus 276 tV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~-~~~l~e~l~~aDvVi~atg----t~~~i~~~~l~~ 350 (494)
T 3ce6_A 276 KVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFD-VVTVEEAIGDADIVVTATG----NKDIIMLEHIKA 350 (494)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCHHHHGGGCSEEEECSS----SSCSBCHHHHHH
T ss_pred EEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCE-EecHHHHHhCCCEEEECCC----CHHHHHHHHHHh
Confidence 99999999999999999999999999999987543323334444 3578999999999999986 557899899999
Q ss_pred cCCCcEEEEcCCChh-hcHHHHHH-HHHcCCcceeEeecCCCCC-CCCccccCCCcEE----EcCCCCCCcHHHHHHHHH
Q 007040 244 IKPGAFLVNTGSSQL-LDDCAVKQ-LLIDGTLAGCALDGAEGPQ-WMEAWVREMPNVL----ILPRSADYSEEVWMEIRD 316 (620)
Q Consensus 244 MK~gAiLINvgRG~v-VDe~AL~~-AL~~G~I~GAaLDV~E~P~-~~~spL~~~pNVI----lTPHiAg~T~ea~~~~~~ 316 (620)
||+|++|||+||+.+ +|..+|.. +|+++.|. +++|+++.|+ ...-+|+..+|++ +|||+++.+.+.+ .+
T Consensus 351 mk~ggilvnvG~~~~eId~~aL~~~aL~~~~I~-~~ldv~~~~~~~~~l~LL~~grlvnL~~~TPH~a~~~~~s~---~~ 426 (494)
T 3ce6_A 351 MKDHAILGNIGHFDNEIDMAGLERSGATRVNVK-PQVDLWTFGDTGRSIIVLSEGRLLNLGNATGHPSFVMSNSF---AN 426 (494)
T ss_dssp SCTTCEEEECSSSGGGBCHHHHHHTTCEEEEEE-TTEEEEECTTTCCEEEEEGGGSCHHHHHSCCSCHHHHHHHH---HH
T ss_pred cCCCcEEEEeCCCCCccCHHHHHHhhhccceEE-EEEEEeecCCcchHHHHHhCCCEEeccCCCCCccccchHHH---HH
Confidence 999999999999999 99999998 88888888 6789987543 2223477788998 9999999888653 67
Q ss_pred HHHHHHHHHHHcCCCCCccc
Q 007040 317 KAISVLQTFFFDGVIPKNAI 336 (620)
Q Consensus 317 ~a~enL~~~L~~G~~p~nvV 336 (620)
.+++++..|+ +|+.+.+.|
T Consensus 427 qa~~ai~~~~-~g~~~~~~V 445 (494)
T 3ce6_A 427 QTIAQIELWT-KNDEYDNEV 445 (494)
T ss_dssp HHHHHHHHHH-TGGGCCSSE
T ss_pred HHHHHHHHHH-cCCCCCCEE
Confidence 8899999986 666555555
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=8.8e-22 Score=209.98 Aligned_cols=257 Identities=14% Similarity=0.067 Sum_probs=183.3
Q ss_pred cccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCCccchHHHHhcCcEEE----------EcCCCChHHHHHHHHH
Q 007040 55 GKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLI----------HVDTSRAEEIADTVMA 124 (620)
Q Consensus 55 ~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D~VD~~aa~erGI~Vt----------Ntpg~~a~aVAE~aLa 124 (620)
+.++++|+|+. ...+++.+.....+...++.....++|...++++.++||.++ |.|.++ ++||++..
T Consensus 63 ~~~~~adii~~-vk~p~~~e~~~l~~~~~l~~~~~~~~~~~~l~~l~~~gi~~ia~e~v~~~~~~~p~~s--~~ae~ag~ 139 (377)
T 2vhw_A 63 QVWADADLLLK-VKEPIAAEYGRLRHGQILFTFLHLAASRACTDALLDSGTTSIAYETVQTADGALPLLA--PMSEVAGR 139 (377)
T ss_dssp HHHHHCSEEEC-SSCCCGGGGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTH--HHHHHHHH
T ss_pred HHhccCCEEEE-eCCCChHHHhhcCCCCEEEEEecccCCHHHHHHHHHcCCeEEEeeeccccCCCccccC--chHHHHHH
Confidence 34556787643 334566666666777777777777888888999999999998 455544 66699985
Q ss_pred HHHHHH-hccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc
Q 007040 125 LLLGLL-RRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP 203 (620)
Q Consensus 125 LiLal~-Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~ 203 (620)
+++.+. |++.. ...+.|... .+..++.|++|+|||+|.||+.+|+.++++|++|+++|++.........
T Consensus 140 ~a~~~a~r~l~~-----~~~g~~~~~-----~~~~~l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~ 209 (377)
T 2vhw_A 140 LAAQVGAYHLMR-----TQGGRGVLM-----GGVPGVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDA 209 (377)
T ss_dssp HHHHHHHHHTSG-----GGTSCCCCT-----TCBTTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----hcCCCcccc-----cCCCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH
Confidence 555554 66632 233443211 1223689999999999999999999999999999999998643221111
Q ss_pred -CCce------ecCCHHhhhcCCcEEEEcc--cCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 204 -SAAR------RMDTLNDLLAASDVISLHC--AVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 204 -~g~~------~~~sL~eLL~~sDvVil~l--PlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
.+.. ...++.+++..+|+|++++ |.+ +|.++|+.+.++.||+|++|||+|.. .|
T Consensus 210 ~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~-~t~~li~~~~l~~mk~g~~iV~va~~-------------~G--- 272 (377)
T 2vhw_A 210 EFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGA-KAPKLVSNSLVAHMKPGAVLVDIAID-------------QG--- 272 (377)
T ss_dssp HTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTTS-CCCCCBCHHHHTTSCTTCEEEEGGGG-------------TT---
T ss_pred hcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCCC-CCcceecHHHHhcCCCCcEEEEEecC-------------CC---
Confidence 1111 1346788899999999966 555 78899999999999999999999931 11
Q ss_pred eeEeecCCC--CCCCCccccCCCcEE--EcCCCCCCcHHH-H--------HHHHHHHHHHHHHHHHcCCCCCccccCCCC
Q 007040 275 GCALDGAEG--PQWMEAWVREMPNVL--ILPRSADYSEEV-W--------MEIRDKAISVLQTFFFDGVIPKNAISDTEG 341 (620)
Q Consensus 275 GAaLDV~E~--P~~~~spL~~~pNVI--lTPHiAg~T~ea-~--------~~~~~~a~enL~~~L~~G~~p~nvVn~~~~ 341 (620)
| |||. |++.+.|++..+||+ +|||+++.+... . ..+.+.+.+++...+..+..+.+.|+...|
T Consensus 273 g----v~e~~ep~~~~~~~~~~~~v~i~~~phl~~~~~~~as~~~~~~~~~~~~~l~~~g~~~~~~~~~~l~~~v~~~~G 348 (377)
T 2vhw_A 273 G----CFEGSRPTTYDHPTFAVHDTLFYCVANMPASVPKTSTYALTNATMPYVLELADHGWRAACRSNPALAKGLSTHEG 348 (377)
T ss_dssp C----SBTTCCCBCSSSCEEEETTEEEECBTTGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHTTEEEETT
T ss_pred C----ccccccCCCCCCCEEEECCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHHHhCChhhhhhcChHHhCcEEeeCC
Confidence 1 6764 666788999999998 999999988662 2 333344445544344567778999999999
Q ss_pred ccCC
Q 007040 342 CENE 345 (620)
Q Consensus 342 y~~~ 345 (620)
|...
T Consensus 349 ~i~~ 352 (377)
T 2vhw_A 349 ALLS 352 (377)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9654
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.74 E-value=8.6e-19 Score=186.06 Aligned_cols=257 Identities=15% Similarity=0.150 Sum_probs=168.3
Q ss_pred ccccceEEEEecCCCCCHHHHhcC-CCCeEEEEecccCCccchHHHHhcCcEEE---EcCCC-Ch----HHHHHHHH--H
Q 007040 56 KIEAAAAVLLHSLAYLPRAAQRRL-RPYQLILCLGSSDRTVDSALAADLGLRLI---HVDTS-RA----EEIADTVM--A 124 (620)
Q Consensus 56 ~l~~AdaVlv~s~~~l~~e~l~~l-p~LK~I~~~gaG~D~VD~~aa~erGI~Vt---Ntpg~-~a----~aVAE~aL--a 124 (620)
.+ ++|+|+... .++ .+.+..+ +..++|.....+.+..+++++.++||.++ +.+.. .. .++++.+- +
T Consensus 63 ~~-~ad~il~vk-~p~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gi~~ia~e~~~~~~~~~~~l~~~s~~ag~~a 139 (369)
T 2eez_A 63 AW-GAEMVVKVK-EPL-PEEYGFLREGLILFTYLHLAADRGLTEAMLRSGVTGIAYETVQLPDGTLPLLVPMSEVAGRMA 139 (369)
T ss_dssp HT-TSSEEECSS-CCC-GGGGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTCCCTTTHHHHHHHHHHH
T ss_pred ee-cCCEEEEEC-CCC-HHHHhhcCCCcEEEEEecccCCHHHHHHHHHCCCeEEEeeccccccCCeeecccchHHHHHHH
Confidence 45 688877443 244 4446776 66999999889999999999999999998 44432 11 44554443 4
Q ss_pred HHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc-
Q 007040 125 LLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP- 203 (620)
Q Consensus 125 LiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~- 203 (620)
.++++. .+..... .++.|. .+...+.+++|+|+|.|.||+.+|+.++++|++|+++|++.........
T Consensus 140 v~~a~~-~l~~~~~---g~~~~~-------~~~~~l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~ 208 (369)
T 2eez_A 140 PQVGAQ-FLEKPKG---GRGVLL-------GGVPGVAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDV 208 (369)
T ss_dssp HHHHHH-HTSGGGT---SCCCCT-------TCBTBBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHH-HHHHhcC---CCceec-------CCCCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh
Confidence 333332 2211100 011222 1224689999999999999999999999999999999998643221111
Q ss_pred CCce------ecCCHHhhhcCCcEEEEcccCCh-hhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCccee
Q 007040 204 SAAR------RMDTLNDLLAASDVISLHCAVTD-ETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGC 276 (620)
Q Consensus 204 ~g~~------~~~sL~eLL~~sDvVil~lPlT~-~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GA 276 (620)
.+.. ...++++++..+|+|+.+++... .+..++..+.++.||+|+++||++-. .| |+
T Consensus 209 ~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~~~-------------~g---g~ 272 (369)
T 2eez_A 209 FGGRVITLTATEANIKKSVQHADLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVAVD-------------QG---GC 272 (369)
T ss_dssp TTTSEEEEECCHHHHHHHHHHCSEEEECCC-------CCSCHHHHTTSCTTCEEEECC----------------------
T ss_pred cCceEEEecCCHHHHHHHHhCCCEEEECCCCCccccchhHHHHHHHhhcCCCEEEEEecC-------------CC---CC
Confidence 1111 13457788899999999999776 67788999999999999999999832 12 44
Q ss_pred EeecCCCCCCCCccccCCCcEE---------EcCCCCCC--cHHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCccCC
Q 007040 277 ALDGAEGPQWMEAWVREMPNVL---------ILPRSADY--SEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTEGCENE 345 (620)
Q Consensus 277 aLDV~E~P~~~~spL~~~pNVI---------lTPHiAg~--T~ea~~~~~~~a~enL~~~L~~G~~p~nvVn~~~~y~~~ 345 (620)
+|+++ |.+.+.|++..+||+ ++||+|+. +.+.+..+.+.+.+++..+ ..++.+.+.++...||...
T Consensus 273 -~d~~e-p~~~~~~~~~~~~v~~~~v~~lp~~~p~~as~~~~~~~~~~l~~l~~~g~~~~-~~~~~l~~~~~~~~G~~~~ 349 (369)
T 2eez_A 273 -VETIR-PTTHAEPTYVVDGVVHYGVANMPGAVPRTSTFALTNQTLPYVLKLAEKGLDAL-LEDAALLKGLNTHKGRLTH 349 (369)
T ss_dssp ---------------CEETTEEEECCSCSGGGSHHHHHHHHHHHHHHHHHHHHHHTTHHH-HSCHHHHTTEEEETTEECC
T ss_pred -CCccc-CCCCCCCEEEECCEEEEeeCCcchhcHHHHHHHHHHHHHHHHHHHHhcChhhh-hcChHHhcCEEeeCCEEcC
Confidence 99984 555677888899999 78998885 5677888999999888665 5888888999999888654
|
| >1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-19 Score=194.47 Aligned_cols=152 Identities=16% Similarity=0.138 Sum_probs=122.5
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhh-CCCEEEEEC-CCCCCCCccccCCceecCCHHhhhcCCcE-EEEcccCChhhHhhc
Q 007040 160 CRGLVLGIVGRSASARALATRSLS-FKMSVLYFD-VPEGKGKVTFPSAARRMDTLNDLLAASDV-ISLHCAVTDETIQII 236 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~Lka-fG~~V~~~d-r~~~~~~~~~~~g~~~~~sL~eLL~~sDv-Vil~lPlT~~T~~lI 236 (620)
|.|++|||+|+|+||+.+|++|++ |||+|++++ ++. . .+. .. ..+++++++.+|. .++ +|+ ++|++ |
T Consensus 210 l~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD~~g-~---~~~--~~-gvdl~~L~~~~d~~~~l-~~l-~~t~~-i 279 (419)
T 1gtm_A 210 LKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKG-G---IYN--PD-GLNADEVLKWKNEHGSV-KDF-PGATN-I 279 (419)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSC-E---EEE--EE-EECHHHHHHHHHHHSSS-TTC-TTSEE-E
T ss_pred cCCCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeCCCc-c---ccC--cc-CCCHHHHHHHHHhcCEe-ecC-ccCee-e
Confidence 899999999999999999999999 999999995 443 1 111 11 1267777775554 233 576 67888 8
Q ss_pred CHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCC-ccccCCCcEEEcCCC----C-------
Q 007040 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWME-AWVREMPNVLILPRS----A------- 304 (620)
Q Consensus 237 ~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~-spL~~~pNVIlTPHi----A------- 304 (620)
+.+.|..||+ .+|||++||.+||+++ +++|+.+.|.+++ .+|++++ ++||..+||++|||+ |
T Consensus 280 ~~~~l~~mk~-dilIn~ArG~~Vde~a-~~aL~~~~I~~aA----neP~t~~a~~ll~~~~V~itPhiaaNaGGvt~s~~ 353 (419)
T 1gtm_A 280 TNEELLELEV-DVLAPAAIEEVITKKN-ADNIKAKIVAEVA----NGPVTPEADEILFEKGILQIPDFLCNAGGVTVSYF 353 (419)
T ss_dssp CHHHHHHSCC-SEEEECSCSCCBCTTG-GGGCCCSEEECCS----SSCBCHHHHHHHHHTTCEEECHHHHTTHHHHHHHH
T ss_pred CHHHHHhCCC-CEEEECCCcccCCHHH-HHHhcCCEEEEee----CCCCCcchHHHHhcCCEEEECchhhhCCcceeeee
Confidence 9999999998 5999999999999999 6999999999887 3354443 699999999999998 6
Q ss_pred ----------CCcHHHHHHHHHHHHHHHHHHHH
Q 007040 305 ----------DYSEEVWMEIRDKAISVLQTFFF 327 (620)
Q Consensus 305 ----------g~T~ea~~~~~~~a~enL~~~L~ 327 (620)
|.++++..++.+.+.+++.+++.
T Consensus 354 E~~qn~~~~~w~~~ev~~~l~~~m~~~~~~~~~ 386 (419)
T 1gtm_A 354 EWVQNITGYYWTIEEVRERLDKKMTKAFYDVYN 386 (419)
T ss_dssp HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888899888873
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.9e-16 Score=171.76 Aligned_cols=156 Identities=13% Similarity=0.127 Sum_probs=115.3
Q ss_pred ecccCCccc-hHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEE
Q 007040 88 LGSSDRTVD-SALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLG 166 (620)
Q Consensus 88 ~gaG~D~VD-~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVG 166 (620)
+++|+..+. .....+++|+|+|++........|...+..-.+...+. . .. ...+.|++||
T Consensus 155 TttGv~rL~~~~~~g~L~iPVinvndsvtk~~~Dn~~Gt~~slldgi~----r---at------------g~~L~GktVg 215 (436)
T 3h9u_A 155 TTTGVKNLYKRLQRGKLTIPAMNVNDSVTKSKFDNLYGCRESLVDGIK----R---AT------------DVMIAGKTAC 215 (436)
T ss_dssp SHHHHHHHHHHHHHTCCCSCEEECTTSHHHHTTHHHHHHHHHHHHHHH----H---HH------------CCCCTTCEEE
T ss_pred cCcChHHHHHHHHcCCCCCceEeechhhhhhhhhccccchHHHHHHHH----H---hc------------CCcccCCEEE
Confidence 345654332 23455789999999876666655544443333332221 1 10 1358999999
Q ss_pred EEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCC
Q 007040 167 IVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKP 246 (620)
Q Consensus 167 IIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~ 246 (620)
|||+|.||+.+|++|++||++|+++|+++.....+...+.. ..+++++++.||+|++ ++.|.++|+.+.|+.||+
T Consensus 216 IiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~-~~sL~eal~~ADVVil----t~gt~~iI~~e~l~~MK~ 290 (436)
T 3h9u_A 216 VCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQ-VLLVEDVVEEAHIFVT----TTGNDDIITSEHFPRMRD 290 (436)
T ss_dssp EECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCHHHHTTTCSEEEE----CSSCSCSBCTTTGGGCCT
T ss_pred EEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCe-ecCHHHHHhhCCEEEE----CCCCcCccCHHHHhhcCC
Confidence 99999999999999999999999999986433222233433 4589999999999996 446889999999999999
Q ss_pred CcEEEEcCCChh-hcHHHHHHH
Q 007040 247 GAFLVNTGSSQL-LDDCAVKQL 267 (620)
Q Consensus 247 gAiLINvgRG~v-VDe~AL~~A 267 (620)
|++|||+|||.+ ||.++|.+.
T Consensus 291 gAIVINvgRg~vEID~~~L~~~ 312 (436)
T 3h9u_A 291 DAIVCNIGHFDTEIQVAWLKAN 312 (436)
T ss_dssp TEEEEECSSSGGGBCHHHHHHH
T ss_pred CcEEEEeCCCCCccCHHHHHhh
Confidence 999999999998 999998764
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=4.2e-16 Score=167.78 Aligned_cols=194 Identities=12% Similarity=0.082 Sum_probs=133.0
Q ss_pred ceEEEEecCCCCCHHHHhcC-CCCeEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHH
Q 007040 60 AAAVLLHSLAYLPRAAQRRL-RPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLAR 138 (620)
Q Consensus 60 AdaVlv~s~~~l~~e~l~~l-p~LK~I~~~gaG~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~ 138 (620)
+|+|+... ....+.++.+ +++++|...+.|+|++|++++.++||.+++ .+.|+|++.++.|.+++.+.....
T Consensus 73 adiil~vk--~p~~~~i~~l~~~~~li~~~~~~~d~~~~~al~~~gI~v~~-----~e~v~~~~~a~~l~~l~~~a~~ag 145 (401)
T 1x13_A 73 SEIILKVN--APLDDEIALLNPGTTLVSFIWPAQNPELMQKLAERNVTVMA-----MDSVPRISRAQSLDALSSMANIAG 145 (401)
T ss_dssp SSEEECSS--CCCHHHHTTCCTTCEEEECCCGGGCHHHHHHHHHTTCEEEE-----GGGCCCSGGGGGGCHHHHHHHHHH
T ss_pred CCeEEEeC--CCCHHHHHHhcCCCcEEEEecCCCCHHHHHHHHHCCCEEEE-----eehhhhhhhhcccchHHHHHHHHH
Confidence 77776542 2356778887 679999999999999999999999999964 455666655554333333322221
Q ss_pred -HHHHhCCCC-CCCCC-CCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecC-----
Q 007040 139 -HALSASGWL-GSVQP-LCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMD----- 210 (620)
Q Consensus 139 -~~~~~g~W~-~~~~~-~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~----- 210 (620)
.....+.|. ....+ .......+.|.+|+|||+|.||..+++.++++|++|+++|++..........+.....
T Consensus 146 ~~av~~~~~~~~~~~~~~~~~~g~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~ 225 (401)
T 1x13_A 146 YRAIVEAAHEFGRFFTGQITAAGKVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKE 225 (401)
T ss_dssp HHHHHHHHHHCSSCSSCEEETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC----
T ss_pred HHHHHHHHHhcccccCCceeeccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccc
Confidence 111122221 11000 0000125889999999999999999999999999999999987543211122322211
Q ss_pred ----------------------CHHhhhcCCcEEEEc--ccCChhhHhhcCHHHhhccCCCcEEEEcC--CChhhcH
Q 007040 211 ----------------------TLNDLLAASDVISLH--CAVTDETIQIINAECLQHIKPGAFLVNTG--SSQLLDD 261 (620)
Q Consensus 211 ----------------------sL~eLL~~sDvVil~--lPlT~~T~~lI~~~~L~~MK~gAiLINvg--RG~vVDe 261 (620)
.+.+++..+|+|+.+ +|.. .+.++|+.+.++.||+|++|||+| ||+.++.
T Consensus 226 ~~~~~~g~~~~~~~~~~~~~~~~l~e~~~~aDvVI~~~~~pg~-~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~~ 301 (401)
T 1x13_A 226 EAGSGDGYAKVMSDAFIKAEMELFAAQAKEVDIIVTTALIPGK-PAPKLITREMVDSMKAGSVIVDLAAQNGGNCEY 301 (401)
T ss_dssp ----CCHHHHHHSHHHHHHHHHHHHHHHHHCSEEEECCCCTTS-CCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTT
T ss_pred cccccccchhhccHHHHHHHHHHHHHHhCCCCEEEECCccCCC-CCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcCc
Confidence 377888899999999 5542 356789999999999999999999 7765543
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-15 Score=165.30 Aligned_cols=142 Identities=15% Similarity=0.092 Sum_probs=104.8
Q ss_pred HhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHH
Q 007040 101 ADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATR 180 (620)
Q Consensus 101 ~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~ 180 (620)
-...+++.|+.... ..+-+.....+...+...... .. ...+.|+++||||+|.||+.+|++
T Consensus 205 g~L~~PvinVnds~----tK~~fDn~yG~~eslvdgI~R---at------------g~~L~GKTVgVIG~G~IGr~vA~~ 265 (464)
T 3n58_A 205 GLLPFPAINVNDSV----TKSKFDNKYGCKESLVDGIRR---GT------------DVMMAGKVAVVCGYGDVGKGSAQS 265 (464)
T ss_dssp TCCCSCEEECTTSH----HHHTTHHHHHHHHHHHHHHHH---HH------------CCCCTTCEEEEECCSHHHHHHHHH
T ss_pred CCCCCCEEeeccHh----hhhhhhhhhcchHHHHHHHHH---hc------------CCcccCCEEEEECcCHHHHHHHHH
Confidence 34578999987544 344333333333322221111 10 135899999999999999999999
Q ss_pred HhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChh-h
Q 007040 181 SLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQL-L 259 (620)
Q Consensus 181 LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~v-V 259 (620)
|++|||+|+++|+.+.....+...+.. ..+++++++.||+|+++. .|.++|+.+.|+.||+|++|||+|||.+ +
T Consensus 266 lrafGa~Viv~d~dp~~a~~A~~~G~~-vv~LeElL~~ADIVv~at----gt~~lI~~e~l~~MK~GAILINvGRgdvEI 340 (464)
T 3n58_A 266 LAGAGARVKVTEVDPICALQAAMDGFE-VVTLDDAASTADIVVTTT----GNKDVITIDHMRKMKDMCIVGNIGHFDNEI 340 (464)
T ss_dssp HHHTTCEEEEECSSHHHHHHHHHTTCE-ECCHHHHGGGCSEEEECC----SSSSSBCHHHHHHSCTTEEEEECSSSTTTB
T ss_pred HHHCCCEEEEEeCCcchhhHHHhcCce-eccHHHHHhhCCEEEECC----CCccccCHHHHhcCCCCeEEEEcCCCCccc
Confidence 999999999999876332222223433 358999999999999864 3789999999999999999999999998 9
Q ss_pred cHHHHHH
Q 007040 260 DDCAVKQ 266 (620)
Q Consensus 260 De~AL~~ 266 (620)
|.++|.+
T Consensus 341 D~~aL~~ 347 (464)
T 3n58_A 341 QVAALRN 347 (464)
T ss_dssp TCGGGTT
T ss_pred CHHHHHh
Confidence 9988873
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=6.8e-15 Score=157.01 Aligned_cols=194 Identities=10% Similarity=0.067 Sum_probs=129.8
Q ss_pred cccccceEEEEecCCCC----CHHHHhcCCC-CeEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHH
Q 007040 55 GKIEAAAAVLLHSLAYL----PRAAQRRLRP-YQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGL 129 (620)
Q Consensus 55 ~~l~~AdaVlv~s~~~l----~~e~l~~lp~-LK~I~~~gaG~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal 129 (620)
+.+.++|+|+.... ++ +++.++.+++ +++|.....+.|+.+++++.++||.+++.... .+.+++..+. +|+.
T Consensus 63 ~~~~~adiil~v~~-p~~~~~~~~~i~~l~~~~~~i~~~~~~~~~~~~~~~~~~gi~~~~~e~~-~~~~~~~~l~-~l~~ 139 (384)
T 1l7d_A 63 QALSQADVVWKVQR-PMTAEEGTDEVALIKEGAVLMCHLGALTNRPVVEALTKRKITAYAMELM-PRISRAQSMD-ILSS 139 (384)
T ss_dssp HHHSSCSEEEEEEC-CCCGGGSCCGGGGSCTTCEEEEECCGGGCHHHHHHHHHTTCEEEEGGGC-CCSGGGGGGC-HHHH
T ss_pred hhhcCCCEEEEecC-cccccCCHHHHHhhccCCEEEEEecccCCHHHHHHHHHCCCEEEEeccc-cccccccccc-hhhH
Confidence 45678898876643 44 6788899975 88888888999999999999999999984211 1111112222 1222
Q ss_pred HhccHHHHHHHHHh-----CCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccC
Q 007040 130 LRRTHLLARHALSA-----SGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPS 204 (620)
Q Consensus 130 ~Rrl~~~~~~~~~~-----g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~ 204 (620)
...+..+ .. ... +.|.. ....+...+.|++|+|||+|.||..+++.++++|++|+++|++....+.....
T Consensus 140 ~a~~ag~-~a-v~~~~~~~~~~~~---~~~~~~~~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~ 214 (384)
T 1l7d_A 140 QSNLAGY-RA-VIDGAYEFARAFP---MMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESL 214 (384)
T ss_dssp HHHHHHH-HH-HHHHHHHCSSCSS---CEEETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHT
T ss_pred HHHHHHH-HH-HHHHHHHhhhccc---chhccCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc
Confidence 2221110 00 111 22221 11112246899999999999999999999999999999999987543211122
Q ss_pred Cceec-----------------------------CCHHhhhcCCcEEEEcc--cCChhhHhhcCHHHhhccCCCcEEEEc
Q 007040 205 AARRM-----------------------------DTLNDLLAASDVISLHC--AVTDETIQIINAECLQHIKPGAFLVNT 253 (620)
Q Consensus 205 g~~~~-----------------------------~sL~eLL~~sDvVil~l--PlT~~T~~lI~~~~L~~MK~gAiLINv 253 (620)
+.... ..+.+++..+|+|+.++ |.+ .+.++|+.+.++.||+|+++||+
T Consensus 215 Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~aDvVi~~~~~pg~-~~~~li~~~~l~~mk~g~vivdv 293 (384)
T 1l7d_A 215 GGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAITTALIPGK-PAPVLITEEMVTKMKPGSVIIDL 293 (384)
T ss_dssp TCEECCC-----------------------CCHHHHHHHHHTTCSEEEECCCCTTS-CCCCCSCHHHHTTSCTTCEEEET
T ss_pred CCeEEeecccccccccccccchhhcCHHHHhhhHHHHHHHhCCCCEEEECCccCCC-CCCeeeCHHHHhcCCCCCEEEEE
Confidence 22211 01778899999999877 443 24578899999999999999999
Q ss_pred C--CCh
Q 007040 254 G--SSQ 257 (620)
Q Consensus 254 g--RG~ 257 (620)
+ ||+
T Consensus 294 a~~~gg 299 (384)
T 1l7d_A 294 AVEAGG 299 (384)
T ss_dssp TGGGTC
T ss_pred ecCCCC
Confidence 8 654
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.8e-17 Score=175.62 Aligned_cols=223 Identities=14% Similarity=0.140 Sum_probs=161.4
Q ss_pred CCeEEEEecccCCccchHHHH-----hcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCC
Q 007040 81 PYQLILCLGSSDRTVDSALAA-----DLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCR 155 (620)
Q Consensus 81 ~LK~I~~~gaG~D~VD~~aa~-----erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~ 155 (620)
.+++|...|+|+|++++..+. +.++.+++.+|.. .+++++.+.+++.+.|++...... ..+.|.-.......
T Consensus 81 a~~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~~-~~~~~~~~~~a~~~~k~v~~~~~~--~~~~~s~a~~av~~ 157 (404)
T 1gpj_A 81 AVRHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGTL-DEALKIVFRRAINLGKRAREETRI--SEGAVSIGSAAVEL 157 (404)
T ss_dssp HHHHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHHHHHHHSST--TCSCCSHHHHHHHH
T ss_pred HhhhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCCc-hHHHHHHHHHHhhhhccCcchhhh--cCCCccHHHHHHHH
Confidence 467888999999999988887 7789999998884 689999999999999987544321 22333210000000
Q ss_pred ---cceeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC-ccccCCce--ecCCHHhhhcCCcEEEEcccC
Q 007040 156 ---GMRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK-VTFPSAAR--RMDTLNDLLAASDVISLHCAV 228 (620)
Q Consensus 156 ---~~~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~-~~~~~g~~--~~~sL~eLL~~sDvVil~lPl 228 (620)
...++.|++|+|||+|.||+.+|+.|+++|+ +|+++|++..... .....+.. ...++.+++..+|+|+.|+|.
T Consensus 158 a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~ 237 (404)
T 1gpj_A 158 AERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAA 237 (404)
T ss_dssp HHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSS
T ss_pred HHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCC
Confidence 0114789999999999999999999999999 9999999864321 11111222 235688889999999999875
Q ss_pred ChhhHhhcCHHHhhc--cC----CCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEEE--c
Q 007040 229 TDETIQIINAECLQH--IK----PGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLI--L 300 (620)
Q Consensus 229 T~~T~~lI~~~~L~~--MK----~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVIl--T 300 (620)
+ ..+++.+.+.. || ++.++||++ . |.+.+++++++|||++ +
T Consensus 238 ~---~~~~~~~~l~~~~lk~r~~~~~v~vdia---------------------------~-P~~i~~~l~~l~~v~l~d~ 286 (404)
T 1gpj_A 238 P---HPVIHVDDVREALRKRDRRSPILIIDIA---------------------------N-PRDVEEGVENIEDVEVRTI 286 (404)
T ss_dssp S---SCCBCHHHHHHHHHHCSSCCCEEEEECC---------------------------S-SCSBCTTGGGSTTEEEEEH
T ss_pred C---CceecHHHHHHHHHhccCCCCEEEEEcc---------------------------C-CCCCCccccccCCeEEEeH
Confidence 4 45677777776 42 456666654 3 5556778999999999 9
Q ss_pred CCCCCCcHHHHH----------HHHHHHHHHHHHHHHcCCCCCccccC
Q 007040 301 PRSADYSEEVWM----------EIRDKAISVLQTFFFDGVIPKNAISD 338 (620)
Q Consensus 301 PHiAg~T~ea~~----------~~~~~a~enL~~~L~~G~~p~nvVn~ 338 (620)
||+++.+.++.. .+....++++..|+ .+..+..+|..
T Consensus 287 d~l~~~~~~~~~~r~~~~~~~~~li~q~~~~f~~w~-~~~~~~~~I~~ 333 (404)
T 1gpj_A 287 DDLRVIARENLERRRKEIPKVEKLIEEELSTVEEEL-EKLKERRLVAD 333 (404)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccHHHHHH
Confidence 999998887654 67778888888986 55555555543
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-14 Score=157.24 Aligned_cols=141 Identities=13% Similarity=0.182 Sum_probs=104.1
Q ss_pred HhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHH
Q 007040 101 ADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATR 180 (620)
Q Consensus 101 ~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~ 180 (620)
-+..++|.|+........-|...+.--.+...+ . +.. ...+.|++++|+|+|.||+.+|++
T Consensus 178 g~L~~Pvi~vnds~tK~~fDn~yGt~~s~~~gi----~---rat------------~~~L~GktV~ViG~G~IGk~vA~~ 238 (435)
T 3gvp_A 178 GKLCVPAMNVNDSVTKQKFDNLYCCRESILDGL----K---RTT------------DMMFGGKQVVVCGYGEVGKGCCAA 238 (435)
T ss_dssp CCCCSCEEECTTCHHHHHHHTHHHHHHHHHHHH----H---HHH------------CCCCTTCEEEEECCSHHHHHHHHH
T ss_pred CCCCCCEEEecchhhhhhhhhhhhhHHHHHHHH----H---Hhh------------CceecCCEEEEEeeCHHHHHHHHH
Confidence 356899999988766555443322222222111 0 110 135899999999999999999999
Q ss_pred HhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChh-h
Q 007040 181 SLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQL-L 259 (620)
Q Consensus 181 LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~v-V 259 (620)
|++||++|+++|+++.....+...+.. ..+++++++.+|+|++| +.|.++|+.+.|+.||+|++|||+|||.+ +
T Consensus 239 Lra~Ga~Viv~D~dp~ra~~A~~~G~~-v~~Leeal~~ADIVi~a----tgt~~lI~~e~l~~MK~gailINvgrg~~EI 313 (435)
T 3gvp_A 239 LKAMGSIVYVTEIDPICALQACMDGFR-LVKLNEVIRQVDIVITC----TGNKNVVTREHLDRMKNSCIVCNMGHSNTEI 313 (435)
T ss_dssp HHHTTCEEEEECSCHHHHHHHHHTTCE-ECCHHHHTTTCSEEEEC----SSCSCSBCHHHHHHSCTTEEEEECSSTTTTB
T ss_pred HHHCCCEEEEEeCChhhhHHHHHcCCE-eccHHHHHhcCCEEEEC----CCCcccCCHHHHHhcCCCcEEEEecCCCccC
Confidence 999999999999876322222233433 45899999999999995 45788999999999999999999999998 7
Q ss_pred cHHHHH
Q 007040 260 DDCAVK 265 (620)
Q Consensus 260 De~AL~ 265 (620)
|..+|.
T Consensus 314 d~~~L~ 319 (435)
T 3gvp_A 314 DVASLR 319 (435)
T ss_dssp TGGGGC
T ss_pred CHHHHH
Confidence 776663
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-12 Score=134.75 Aligned_cols=116 Identities=9% Similarity=0.035 Sum_probs=99.9
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQ 242 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~ 242 (620)
++|||||+|.||..||++|...|++|++||+++...+.....|.....++.++++.||+|++++|..+.+..++....+.
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~~ 85 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFSMELVE 85 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCHHHHH
T ss_pred CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHHHHHh
Confidence 47999999999999999999999999999999877766666788888999999999999999999988888888888999
Q ss_pred ccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 243 HIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 243 ~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
.+++|.++|+++....-+...+.+.+.+..+. .+|.
T Consensus 86 ~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~--~lda 121 (297)
T 4gbj_A 86 KLGKDGVHVSMSTISPETSRQLAQVHEWYGAH--YVGA 121 (297)
T ss_dssp HHCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEC
T ss_pred hcCCCeEEEECCCCChHHHHHHHHHHHhcCCc--eecC
Confidence 99999999999999999999999999988775 6776
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=6.9e-13 Score=137.53 Aligned_cols=116 Identities=16% Similarity=0.195 Sum_probs=102.4
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC--HHH
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN--AEC 240 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~--~~~ 240 (620)
++|||||+|.||..||++|...|++|++||+++...+.....|.....++.|+++.||+|++|+|..+.++.++. ...
T Consensus 4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~ 83 (300)
T 3obb_A 4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL 83 (300)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSSS
T ss_pred CEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhhh
Confidence 479999999999999999999999999999998665555556778889999999999999999999999888773 347
Q ss_pred hhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 241 L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
++.+++|.++||++....-+...+.+.+.+..+. .||.
T Consensus 84 ~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~--~lDa 121 (300)
T 3obb_A 84 LAHIAPGTLVLECSTIAPTSARKIHAAARERGLA--MLDA 121 (300)
T ss_dssp TTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCE--EEEC
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCE--EEec
Confidence 8899999999999999999999999999988775 7775
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=4.9e-12 Score=131.69 Aligned_cols=149 Identities=13% Similarity=0.080 Sum_probs=109.1
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCCccccCCc--eecCCHHh-hhcCCcEEEEcccCChhhH
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGKVTFPSAA--RRMDTLND-LLAASDVISLHCAVTDETI 233 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~--~V~~~dr~~~~~~~~~~~g~--~~~~sL~e-LL~~sDvVil~lPlT~~T~ 233 (620)
++..++|||||+|.||..+|+.|+..|+ +|++||++..........|. ....++++ ++++||+|++++|... +.
T Consensus 30 ~~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilavp~~~-~~ 108 (314)
T 3ggo_A 30 SLSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRT-FR 108 (314)
T ss_dssp CCSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECSCGGG-HH
T ss_pred hcCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeCCHHH-HH
Confidence 3455899999999999999999999999 99999998754332233343 33567888 8999999999999663 44
Q ss_pred hhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCC--CCCCCccccCCCcEEEcCCCCCCcHHH
Q 007040 234 QIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG--PQWMEAWVREMPNVLILPRSADYSEEV 310 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~--P~~~~spL~~~pNVIlTPHiAg~T~ea 310 (620)
.++ .+....+++++++++++.......+++.+.+....+.+..+-+.+. |......|+....+++||+-+ .+.+.
T Consensus 109 ~vl-~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~~~v~~hPm~G~e~sG~~~A~~~Lf~g~~~il~~~~~-~~~~~ 185 (314)
T 3ggo_A 109 EIA-KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKK-TDKKR 185 (314)
T ss_dssp HHH-HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEECCCCCCCSGGGCCTTTTTTCEEEECCCTT-SCHHH
T ss_pred HHH-HHHhhccCCCcEEEECCCCcHHHHHHHHHhcCCCEEecCcccCCcccchhhhhhhhhcCCEEEEEeCCC-CCHHH
Confidence 555 5566779999999999987765566677776554444455555443 334556788888999999844 33443
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.30 E-value=7.3e-12 Score=126.49 Aligned_cols=142 Identities=14% Similarity=0.125 Sum_probs=103.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCCccccCCce--ecCCHHhhhc-CCcEEEEcccCChhhHhhcC
Q 007040 163 LVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGKVTFPSAAR--RMDTLNDLLA-ASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~--~V~~~dr~~~~~~~~~~~g~~--~~~sL~eLL~-~sDvVil~lPlT~~T~~lI~ 237 (620)
++|||||+|.||..+|..|...|+ +|++||++..........+.. ...++++++. .+|+|++++|.. .+..++.
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~~-~~~~v~~ 80 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFREIAK 80 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHH-HHHHHHH
T ss_pred cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCHH-HHHHHHH
Confidence 479999999999999999999998 999999986433222222332 2457888999 999999999965 4556664
Q ss_pred HHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCC--CCCCCCccccCCCcEEEcCCCCCC
Q 007040 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE--GPQWMEAWVREMPNVLILPRSADY 306 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E--~P~~~~spL~~~pNVIlTPHiAg~ 306 (620)
+....+++++++++++++.....+.+.+.+..+.+.+..+-+.+ .|......++..++++++||.++.
T Consensus 81 -~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~~v~~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~~ 150 (281)
T 2g5c_A 81 -KLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTD 150 (281)
T ss_dssp -HHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSC
T ss_pred -HHHhhCCCCcEEEECCCCcHHHHHHHHHhccccceeeccccCCccCChhhhhhHHhCCCCEEEecCCCCC
Confidence 45667999999999999887777778888876433322222222 133445577788899999997665
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.9e-12 Score=132.23 Aligned_cols=120 Identities=13% Similarity=0.129 Sum_probs=99.9
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
++..++|||||+|.||..+|+.|...|++|++||+++.........+.....++.+++++||+|++++|....++.++..
T Consensus 6 ~~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~ 85 (306)
T 3l6d_A 6 ESFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLGM 85 (306)
T ss_dssp CCCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHTS
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhcc
Confidence 35678899999999999999999999999999999875444333345666789999999999999999988778888864
Q ss_pred HHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 239 ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 239 ~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
+.+..+++|.++||++++...+..++.+.+....+. .+|.
T Consensus 86 ~~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~--~vda 125 (306)
T 3l6d_A 86 PGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGH--YVKG 125 (306)
T ss_dssp TTHHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCE--EEEE
T ss_pred cchhhccCCCEEEECCCCCHHHHHHHHHHHHHcCCe--EEec
Confidence 346778899999999999999999999999876554 5564
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.5e-11 Score=126.29 Aligned_cols=115 Identities=19% Similarity=0.251 Sum_probs=98.2
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHh
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECL 241 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L 241 (620)
.++|||||+|.||..+|+.|...|++|++||+++...+.....+.....+++++++ ||+|++++|....++.++ ...+
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~-~~l~ 92 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVV-GELA 92 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHH-HHHH
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHH-HHHH
Confidence 35899999999999999999999999999999987655444456667789999999 999999999877888777 6778
Q ss_pred hccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 242 QHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 242 ~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
..+++|.++||+++........+.+.+.+..+. .+|.
T Consensus 93 ~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~--~~~~ 129 (296)
T 3qha_A 93 GHAKPGTVIAIHSTISDTTAVELARDLKARDIH--IVDA 129 (296)
T ss_dssp TTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCE--EEEC
T ss_pred HhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCE--EEeC
Confidence 889999999999999999999999999876543 4553
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.4e-11 Score=128.00 Aligned_cols=120 Identities=12% Similarity=0.082 Sum_probs=100.0
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
+...++|||||+|.||..+|+.|...|++|++||+++...+.....++....++.++++.||+|++++|....+..++..
T Consensus 28 ~~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~ 107 (320)
T 4dll_A 28 DPYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFA 107 (320)
T ss_dssp -CCCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTT
T ss_pred ccCCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcc
Confidence 34567999999999999999999999999999999875544333346667789999999999999999987777777753
Q ss_pred -HHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 239 -ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 239 -~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
..+..+++|.++||++++...+...+.+.+.+..+. .+|.
T Consensus 108 ~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~--~~~~ 148 (320)
T 4dll_A 108 QGVAAAMKPGSLFLDMASITPREARDHAARLGALGIA--HLDT 148 (320)
T ss_dssp TCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEC
T ss_pred hhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCE--EEeC
Confidence 567789999999999999999999999999886554 4554
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.7e-11 Score=124.73 Aligned_cols=115 Identities=15% Similarity=0.111 Sum_probs=97.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhc--CHHH
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII--NAEC 240 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI--~~~~ 240 (620)
++|||||+|.||..+|+.|...|++|++||+++...+.....+.....++.++++.||+|++++|....+..++ ....
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l 81 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGV 81 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchH
Confidence 68999999999999999999999999999998765543334466677899999999999999999877777776 2456
Q ss_pred hhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEee
Q 007040 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD 279 (620)
Q Consensus 241 L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLD 279 (620)
+..+++|.++||+++....+...+.+.+.+..+. .+|
T Consensus 82 ~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~--~~~ 118 (287)
T 3pef_A 82 LEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGR--FLE 118 (287)
T ss_dssp HHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEE
T ss_pred hhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCE--EEE
Confidence 7889999999999999999999999998876553 455
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.21 E-value=2e-11 Score=126.10 Aligned_cols=118 Identities=8% Similarity=0.112 Sum_probs=98.7
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhc--C
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII--N 237 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI--~ 237 (620)
..-++|||||+|.||..+|+.|...|++|++||++..........+.....++.++++.||+|++++|....+..++ .
T Consensus 19 ~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~ 98 (310)
T 3doj_A 19 SHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVVFDK 98 (310)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHST
T ss_pred ccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHHhCc
Confidence 45578999999999999999999999999999998865543334466667899999999999999999877777776 2
Q ss_pred HHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEee
Q 007040 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD 279 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLD 279 (620)
...+..+++|.++||+++........+.+.+.+..+. .+|
T Consensus 99 ~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~--~v~ 138 (310)
T 3doj_A 99 GGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGR--FVE 138 (310)
T ss_dssp TCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEE
T ss_pred hhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCE--EEe
Confidence 4567889999999999999999999999998876543 455
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.7e-11 Score=128.58 Aligned_cols=114 Identities=10% Similarity=0.137 Sum_probs=96.9
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCC---cEEEEcccCChhhHhhc
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAAS---DVISLHCAVTDETIQII 236 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~s---DvVil~lPlT~~T~~lI 236 (620)
+.+++|||||+|.||..+|+.|...|++|++||++..........++....++.++++.+ |+|++++|.. .+..++
T Consensus 20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~-~v~~vl 98 (358)
T 4e21_A 20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAA-VVDSML 98 (358)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGG-GHHHHH
T ss_pred hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHH-HHHHHH
Confidence 467899999999999999999999999999999987544433334566667999999999 9999999987 777777
Q ss_pred CHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcce
Q 007040 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAG 275 (620)
Q Consensus 237 ~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~G 275 (620)
...+..+++|.+|||++++...+...+.+.+.+..+..
T Consensus 99 -~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~ 136 (358)
T 4e21_A 99 -QRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITY 136 (358)
T ss_dssp -HHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEE
T ss_pred -HHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEE
Confidence 56788899999999999999999999999999877753
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.8e-11 Score=124.53 Aligned_cols=116 Identities=14% Similarity=0.115 Sum_probs=96.4
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhc--CHHH
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII--NAEC 240 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI--~~~~ 240 (620)
++|||||+|.||..+|+.|...|++|++||+++...+.....+.....++.++++.||+|++++|....++.++ ....
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l 81 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGV 81 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhh
Confidence 47999999999999999999999999999998865543333456667799999999999999999877777776 2456
Q ss_pred hhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 241 L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
+..+++|.++||++++.......+.+.+.+..+. .+|.
T Consensus 82 ~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~--~~~~ 119 (287)
T 3pdu_A 82 LEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGR--FLEA 119 (287)
T ss_dssp GGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEC
T ss_pred hhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCE--EEEC
Confidence 7889999999999999999999999988876543 4553
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.3e-11 Score=124.90 Aligned_cols=116 Identities=16% Similarity=0.180 Sum_probs=95.3
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCcee-cCCHHhhhcCCcEEEEcccCChhhHhhcC--H
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR-MDTLNDLLAASDVISLHCAVTDETIQIIN--A 238 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~-~~sL~eLL~~sDvVil~lPlT~~T~~lI~--~ 238 (620)
.++|||||+|.||..+|+.|...|++|++||+++...+.....+... ..++.++++.||+|++++|....++.++. .
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~~ 86 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGED 86 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--C
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhChh
Confidence 46899999999999999999999999999999875443333334544 67899999999999999998777777763 4
Q ss_pred HHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEee
Q 007040 239 ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD 279 (620)
Q Consensus 239 ~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLD 279 (620)
..+..+++|+++||+++........+.+.+.+..+. .+|
T Consensus 87 ~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~--~~~ 125 (303)
T 3g0o_A 87 GVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLN--MLD 125 (303)
T ss_dssp CCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCE--EEE
T ss_pred hHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCe--EEe
Confidence 567789999999999999999999999998876543 455
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.7e-10 Score=117.69 Aligned_cols=140 Identities=13% Similarity=0.074 Sum_probs=101.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccC-------------------------CceecCCHHhhhc
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPS-------------------------AARRMDTLNDLLA 217 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~-------------------------g~~~~~sL~eLL~ 217 (620)
++|||||+|.||..+|..+...|++|++||++.......... .+....++.++++
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~ 84 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAVK 84 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHTT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHhc
Confidence 589999999999999999999999999999986432211110 1234578889999
Q ss_pred CCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcE
Q 007040 218 ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNV 297 (620)
Q Consensus 218 ~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNV 297 (620)
.||+|++++|.+.+....+-.+....++++++|++.+.+ +...++.+++... ...+++..+. | .+.++.+
T Consensus 85 ~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~--~~~~~la~~~~~~-~~~ig~h~~~-p------~~~~~lv 154 (283)
T 4e12_A 85 DADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSST--LLPSDLVGYTGRG-DKFLALHFAN-H------VWVNNTA 154 (283)
T ss_dssp TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHHHHSCG-GGEEEEEECS-S------TTTSCEE
T ss_pred cCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCCC-cceEEEccCC-C------cccCceE
Confidence 999999999999887777767788889999999965554 3456777777542 3335555443 2 3467889
Q ss_pred EEcCCCCCCcHHHHHH
Q 007040 298 LILPRSADYSEEVWME 313 (620)
Q Consensus 298 IlTPHiAg~T~ea~~~ 313 (620)
.++||. ..+.+..+.
T Consensus 155 evv~~~-~t~~~~~~~ 169 (283)
T 4e12_A 155 EVMGTT-KTDPEVYQQ 169 (283)
T ss_dssp EEEECT-TSCHHHHHH
T ss_pred EEEeCC-CCCHHHHHH
Confidence 999984 334444443
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.12 E-value=9.1e-11 Score=121.47 Aligned_cols=119 Identities=13% Similarity=0.076 Sum_probs=93.3
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC--CCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhc
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE--GKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII 236 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~--~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI 236 (620)
...++|||||+|.||..+|+.|...|+ +|++||++. ...+.....+.....++.++++.||+|++++|....... +
T Consensus 22 ~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~-~ 100 (312)
T 3qsg_A 22 SNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGECDVIFSLVTAQAALEV-A 100 (312)
T ss_dssp ---CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHHHHCSEEEECSCTTTHHHH-H
T ss_pred CCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHHhcCCEEEEecCchhHHHH-H
Confidence 346789999999999999999999999 999999973 222222234566677999999999999999998765543 3
Q ss_pred CHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 237 ~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
.+.+..+++++++||+++.......++.+.+.+..+....+|.
T Consensus 101 -~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~ 143 (312)
T 3qsg_A 101 -QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAV 143 (312)
T ss_dssp -HHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred -HhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEec
Confidence 5677889999999999999999999999988875323345664
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.12 E-value=4.5e-11 Score=126.22 Aligned_cols=140 Identities=11% Similarity=0.036 Sum_probs=99.0
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcC----CcEEEEcccCChhhHhhcC
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAA----SDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~----sDvVil~lPlT~~T~~lI~ 237 (620)
-++|||||+|.||.++|+.|+..|++|++||+++.........|+....++.++++. +|+|++++|. ..+..++.
T Consensus 8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~-~~~~~vl~ 86 (341)
T 3ktd_A 8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPM-TAIDSLLD 86 (341)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCH-HHHHHHHH
T ss_pred CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCH-HHHHHHHH
Confidence 357999999999999999999999999999998754443334455556788888765 6999999994 46667763
Q ss_pred HHHhhccCCCcEEEEcCCChhhcHHHHHHHHH-cCCcceeEeecCCC--CCCCCccccCCCcEEEcCCCC
Q 007040 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI-DGTLAGCALDGAEG--PQWMEAWVREMPNVLILPRSA 304 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~-~G~I~GAaLDV~E~--P~~~~spL~~~pNVIlTPHiA 304 (620)
.+..++++++++|++..+....+++.+.+. ...+.++.+-+.+. |......|++..++++||+-.
T Consensus 87 --~l~~~~~~~iv~Dv~Svk~~i~~~~~~~~~~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~iltp~~~ 154 (341)
T 3ktd_A 87 --AVHTHAPNNGFTDVVSVKTAVYDAVKARNMQHRYVGSHPMAGTANSGWSASMDGLFKRAVWVVTFDQL 154 (341)
T ss_dssp --HHHHHCTTCCEEECCSCSHHHHHHHHHTTCGGGEECEEECCSCC-CCGGGCCSSTTTTCEEEECCGGG
T ss_pred --HHHccCCCCEEEEcCCCChHHHHHHHHhCCCCcEecCCccccccccchhhhhhHHhcCCeEEEEeCCC
Confidence 344469999999998876544444444432 12233344444442 334556788888899999743
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.3e-10 Score=117.75 Aligned_cols=140 Identities=16% Similarity=0.148 Sum_probs=100.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhC--CCEEEEECCCCCCCCccccCCc--eecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 163 LVLGIVGRSASARALATRSLSF--KMSVLYFDVPEGKGKVTFPSAA--RRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf--G~~V~~~dr~~~~~~~~~~~g~--~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
++|||||+|.||..+|..|... |++|++||++..........+. ....++++++.++|+|++++|... ...++.
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~~-~~~v~~- 84 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIKK-TIDFIK- 84 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHHH-HHHHHH-
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHHH-HHHHHH-
Confidence 5899999999999999999866 7899999998643322112233 234578888999999999999553 355553
Q ss_pred HHhhc-cCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEee---cC--C--CCCCCCccccCCCcEEEcCCCCCC
Q 007040 239 ECLQH-IKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD---GA--E--GPQWMEAWVREMPNVLILPRSADY 306 (620)
Q Consensus 239 ~~L~~-MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLD---V~--E--~P~~~~spL~~~pNVIlTPHiAg~ 306 (620)
+.... +++++++|+++++.....+.+.+.+....+. .++ ++ + .|......++..++++++||.++.
T Consensus 85 ~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~--~v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~~~~~~~ 158 (290)
T 3b1f_A 85 ILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQ--FVGSHPMAGSHKSGAVAANVNLFENAYYIFSPSCLTK 158 (290)
T ss_dssp HHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCE--EEEEEEC-----CCTTSCCTTTTTTSEEEEEECTTCC
T ss_pred HHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCE--EEEeCCcCCCCcchHHHhhHHHhCCCeEEEecCCCCC
Confidence 35566 8999999999998877677788877652222 233 11 1 244445577788889999987654
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.07 E-value=4.8e-10 Score=112.86 Aligned_cols=139 Identities=15% Similarity=0.177 Sum_probs=95.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCc--eecCCHHhhhcCCcEEEEcccCChhhHhhcCHHH
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA--RRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~--~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~ 240 (620)
++|+|||+|.||..+|+.|...|++|++||++..........+. ....+++++ ..+|+|++++|. ..+..++. +.
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~~-~~~~~~~~-~l 77 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTPI-QLILPTLE-KL 77 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSCH-HHHHHHHH-HH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECCH-HHHHHHHH-HH
Confidence 47999999999999999999999999999998643322112232 234578888 899999999994 35555653 45
Q ss_pred hhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEee--cCCCCCCCCccccCCCcEEEcCCCCC
Q 007040 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD--GAEGPQWMEAWVREMPNVLILPRSAD 305 (620)
Q Consensus 241 L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLD--V~E~P~~~~spL~~~pNVIlTPHiAg 305 (620)
...+++++++|+++.......+.+.+.+. ..+.+..+- +...|....+.++..+.++++|+.+.
T Consensus 78 ~~~~~~~~~vv~~~~~~~~~~~~~~~~~~-~~~~~~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~ 143 (279)
T 2f1k_A 78 IPHLSPTAIVTDVASVKTAIAEPASQLWS-GFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYT 143 (279)
T ss_dssp GGGSCTTCEEEECCSCCHHHHHHHHHHST-TCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTC
T ss_pred HhhCCCCCEEEECCCCcHHHHHHHHHHhC-CEeecCcccCCccCCHHHHhHHHhCCCcEEEecCCCC
Confidence 66789999999998877666666665543 222221221 11123334445666678889997554
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.05 E-value=3.3e-10 Score=117.75 Aligned_cols=111 Identities=11% Similarity=0.054 Sum_probs=89.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC-CEEEEECCCCCCC-------CccccCCceecC-CHHhhhcCCcEEEEcccCChhhH
Q 007040 163 LVLGIVGRSASARALATRSLSFK-MSVLYFDVPEGKG-------KVTFPSAARRMD-TLNDLLAASDVISLHCAVTDETI 233 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG-~~V~~~dr~~~~~-------~~~~~~g~~~~~-sL~eLL~~sDvVil~lPlT~~T~ 233 (620)
++|||||+|.||..+|+.|...| ++|++||+++... ......+. .. ++.+++++||+|++++|......
T Consensus 25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~--~~~s~~e~~~~aDvVi~avp~~~~~~ 102 (317)
T 4ezb_A 25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV--EPLDDVAGIACADVVLSLVVGAATKA 102 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC--EEESSGGGGGGCSEEEECCCGGGHHH
T ss_pred CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC--CCCCHHHHHhcCCEEEEecCCHHHHH
Confidence 67999999999999999999999 9999999986211 11111233 45 78899999999999999876665
Q ss_pred hhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEee
Q 007040 234 QIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD 279 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLD 279 (620)
.+ .+.+..++++.++||+++........+.+.+.+..+. .+|
T Consensus 103 ~~--~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~--~~d 144 (317)
T 4ezb_A 103 VA--ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGS--FVE 144 (317)
T ss_dssp HH--HHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCE--EEE
T ss_pred HH--HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCe--EEe
Confidence 54 6677889999999999999999999999999876543 455
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.04 E-value=5.6e-10 Score=120.42 Aligned_cols=181 Identities=12% Similarity=0.128 Sum_probs=111.8
Q ss_pred cccceEEEEecCCCCCHHHHhcCCCCeEEEE-ecccCCccchHHHHhcCcEEEEc---CCCC-h------HHHHHHHH--
Q 007040 57 IEAAAAVLLHSLAYLPRAAQRRLRPYQLILC-LGSSDRTVDSALAADLGLRLIHV---DTSR-A------EEIADTVM-- 123 (620)
Q Consensus 57 l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~-~gaG~D~VD~~aa~erGI~VtNt---pg~~-a------~aVAE~aL-- 123 (620)
+.++|+|+.-. ..+++.+..++.=+++.+ .--.-+.--++++.++||...-- |... + .+++|.+=
T Consensus 88 ~~~adiIlkVk--~p~~~e~~~l~~g~~l~~~lh~~~~~~l~~~l~~~~it~ia~E~i~r~~ra~~l~~ls~~s~iAGy~ 165 (405)
T 4dio_A 88 AKTADVILKVR--RPSAQEISGYRSGAVVIAIMDPYGNEEAISAMAGAGLTTFAMELMPRITRAQSMDVLSSQANLAGYQ 165 (405)
T ss_dssp GGGCSEEEEEE--CCCTTTGGGSCTTCEEEEECCCTTCHHHHHHHHHTTCEEEEGGGSCCSGGGGGGCHHHHHHHHHHHH
T ss_pred hccCCEEEEeC--CCChhHHhhcCCCcEEEEEeccccCHHHHHHHHHCCCeEEEeeccccccccCccceecchhHHHHHH
Confidence 55678777543 234555677765444443 33222322346678889988652 3211 1 23333321
Q ss_pred HHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc
Q 007040 124 ALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP 203 (620)
Q Consensus 124 aLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~ 203 (620)
+.+++.. .+.+....+..+...+.+.+|+|||+|.||..+|+.++++|++|++||+++...+....
T Consensus 166 Av~~aa~--------------~l~~~~~~l~t~~g~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~ 231 (405)
T 4dio_A 166 AVIDAAY--------------EYDRALPMMMTAAGTVPAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVAS 231 (405)
T ss_dssp HHHHHHH--------------HCSSCSSCEEETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHH
T ss_pred HHHHHHH--------------HhHhhhchhhccCCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 1111110 11111111112224578999999999999999999999999999999998753221111
Q ss_pred CCce-----------------e------------cCCHHhhhcCCcEEEEcc--cCChhhHhhcCHHHhhccCCCcEEEE
Q 007040 204 SAAR-----------------R------------MDTLNDLLAASDVISLHC--AVTDETIQIINAECLQHIKPGAFLVN 252 (620)
Q Consensus 204 ~g~~-----------------~------------~~sL~eLL~~sDvVil~l--PlT~~T~~lI~~~~L~~MK~gAiLIN 252 (620)
.+.. + ..+|.++++.+|+||.++ |.. .+-.+|+++.++.||||++|||
T Consensus 232 ~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~l~e~l~~aDVVI~tvlipg~-~ap~Lvt~emv~~Mk~GsVIVD 310 (405)
T 4dio_A 232 LGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAALVAEHIAKQDIVITTALIPGR-PAPRLVTREMLDSMKPGSVVVD 310 (405)
T ss_dssp TTCEECCCCC-----------------CHHHHHHHHHHHHHHHTCSEEEECCCCSSS-CCCCCBCHHHHTTSCTTCEEEE
T ss_pred cCCceeecccccccccccccchhhhcchhhhhhhHhHHHHHhcCCCEEEECCcCCCC-CCCEEecHHHHhcCCCCCEEEE
Confidence 1111 0 236889999999999875 533 3567899999999999999999
Q ss_pred cC
Q 007040 253 TG 254 (620)
Q Consensus 253 vg 254 (620)
++
T Consensus 311 vA 312 (405)
T 4dio_A 311 LA 312 (405)
T ss_dssp TT
T ss_pred Ee
Confidence 97
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.02 E-value=3.4e-10 Score=114.50 Aligned_cols=108 Identities=13% Similarity=0.131 Sum_probs=88.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCH--HH
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA--EC 240 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~--~~ 240 (620)
++|||||+|.||..+|+.|...|++|++|| +..........+.....++++++..+|+|++++|....+..++.. ..
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l 82 (295)
T 1yb4_A 4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGC 82 (295)
T ss_dssp CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTSS
T ss_pred CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchhH
Confidence 479999999999999999999999999999 765443222235555678999999999999999987777777642 45
Q ss_pred hhccCCCcEEEEcCCChhhcHHHHHHHHHcC
Q 007040 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDG 271 (620)
Q Consensus 241 L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G 271 (620)
...+++|+++|+++.|...+.+.|.+.+...
T Consensus 83 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~ 113 (295)
T 1yb4_A 83 AKTSLQGKTIVDMSSISPIETKRFAQRVNEM 113 (295)
T ss_dssp TTSCCTTEEEEECSCCCHHHHHHHHHHHHTT
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence 5678999999999999888888899988864
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=2.3e-10 Score=121.58 Aligned_cols=108 Identities=17% Similarity=0.207 Sum_probs=87.8
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhc-CCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLA-ASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~-~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|++|+|+|+|+||+.+|++|++||++|+++|++..........+... .++++++. .||+++.| .+.++|+
T Consensus 172 ~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~-v~~~ell~~~~DIliP~-----A~~~~I~ 245 (355)
T 1c1d_A 172 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTA-VALEDVLSTPCDVFAPC-----AMGGVIT 245 (355)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCGGGGGGCCCSEEEEC-----SCSCCBC
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEE-eChHHhhcCccceecHh-----HHHhhcC
Confidence 58999999999999999999999999999999998753211111123333 37788888 89999843 4788999
Q ss_pred HHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
.+.++.|| ..++||.+++++.+++| .++|+++.|.
T Consensus 246 ~~~~~~lk-~~iVie~AN~p~t~~eA-~~~L~~~gIl 280 (355)
T 1c1d_A 246 TEVARTLD-CSVVAGAANNVIADEAA-SDILHARGIL 280 (355)
T ss_dssp HHHHHHCC-CSEECCSCTTCBCSHHH-HHHHHHTTCE
T ss_pred HHHHhhCC-CCEEEECCCCCCCCHHH-HHHHHhCCEE
Confidence 99999998 78999999999999777 5888888765
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.01 E-value=7.5e-10 Score=113.79 Aligned_cols=120 Identities=14% Similarity=0.047 Sum_probs=87.5
Q ss_pred CcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHH
Q 007040 162 GLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240 (620)
Q Consensus 162 GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~ 240 (620)
.++||||| +|.||..+|..|+..|++|++||++.. .++.+++..||+|++++|... +..++. +.
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~-------------~~~~~~~~~aDvVilavp~~~-~~~vl~-~l 85 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW-------------AVAESILANADVVIVSVPINL-TLETIE-RL 85 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG-------------GGHHHHHTTCSEEEECSCGGG-HHHHHH-HH
T ss_pred CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc-------------cCHHHHhcCCCEEEEeCCHHH-HHHHHH-HH
Confidence 46899999 999999999999999999999998652 257788999999999999664 666764 45
Q ss_pred hhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCC-CCCccccCCCcEEEcCCC
Q 007040 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQ-WMEAWVREMPNVLILPRS 303 (620)
Q Consensus 241 L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~-~~~spL~~~pNVIlTPHi 303 (620)
...++++++++++++......+++.+.+. .. .+.. +|. .++.+++...+++++||.
T Consensus 86 ~~~l~~~~iv~~~~svk~~~~~~~~~~~~---~~--~v~~--hP~~g~~~~~~~g~~~~l~~~~ 142 (298)
T 2pv7_A 86 KPYLTENMLLADLTSVKREPLAKMLEVHT---GA--VLGL--HPMFGADIASMAKQVVVRCDGR 142 (298)
T ss_dssp GGGCCTTSEEEECCSCCHHHHHHHHHHCS---SE--EEEE--EECSCTTCSCCTTCEEEEEEEE
T ss_pred HhhcCCCcEEEECCCCCcHHHHHHHHhcC---CC--EEee--CCCCCCCchhhcCCeEEEecCC
Confidence 66799999999998877655555554431 11 2221 121 112245566689999974
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=99.01 E-value=5.9e-10 Score=122.86 Aligned_cols=112 Identities=13% Similarity=0.152 Sum_probs=93.2
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccC-----CceecCCHHhhhc---CCcEEEEcccCChhhH
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPS-----AARRMDTLNDLLA---ASDVISLHCAVTDETI 233 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~-----g~~~~~sL~eLL~---~sDvVil~lPlT~~T~ 233 (620)
.++|||||+|.||..||..|...|++|++||+++...+..... .+....+++++++ .+|+|++++|..+.+.
T Consensus 4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~ 83 (484)
T 4gwg_A 4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVD 83 (484)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHHH
T ss_pred CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHHH
Confidence 3679999999999999999999999999999987543322111 1233568888887 4999999999988888
Q ss_pred hhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 234 QIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
.++ .+.+..|++|.+|||++++...+...+.+.|.+..+.
T Consensus 84 ~vl-~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~ 123 (484)
T 4gwg_A 84 DFI-EKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGIL 123 (484)
T ss_dssp HHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred HHH-HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccc
Confidence 887 5678899999999999999999999999999887665
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.00 E-value=3.3e-10 Score=115.05 Aligned_cols=111 Identities=15% Similarity=0.185 Sum_probs=90.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC--HHH
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN--AEC 240 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~--~~~ 240 (620)
++|+|||+|.||..+|..|...|++|++||++..........+.....++++++..+|+|++++|....+..++. .+.
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l 85 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI 85 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcchH
Confidence 579999999999999999999999999999986443322223555567899999999999999998777777763 345
Q ss_pred hhccCCCcEEEEcCCChhhcHHHHHHHHHcCCc
Q 007040 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTL 273 (620)
Q Consensus 241 L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I 273 (620)
...+++|+++||++.|...+.+.|.+.+....+
T Consensus 86 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~ 118 (299)
T 1vpd_A 86 IEGAKPGTVLIDMSSIAPLASREISDALKAKGV 118 (299)
T ss_dssp HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTC
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 677999999999999988788889998876433
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=3.1e-10 Score=115.03 Aligned_cols=108 Identities=13% Similarity=0.205 Sum_probs=87.3
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCH--HH
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA--EC 240 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~--~~ 240 (620)
++|||||+|.||..+|+.|...|++|++||++..........++....++.+++..+|+|++++|....+..++.. ..
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~ 80 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGI 80 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSG
T ss_pred CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhH
Confidence 3699999999999999999999999999999875433222335555678999999999999999988777777643 25
Q ss_pred hhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 241 L~~MK~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
+..+++|.++|+++.....+...+.+.+..
T Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~ 110 (296)
T 2gf2_A 81 LKKVKKGSLLIDSSTIDPAVSKELAKEVEK 110 (296)
T ss_dssp GGTCCTTCEEEECSCCCHHHHHHHHHHHHH
T ss_pred HhcCCCCCEEEECCCCCHHHHHHHHHHHHH
Confidence 567899999999888887777777777765
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=98.99 E-value=4e-10 Score=114.54 Aligned_cols=109 Identities=19% Similarity=0.260 Sum_probs=89.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC--HHH
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN--AEC 240 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~--~~~ 240 (620)
++|||||+|.||..+|..|...|++|++||+++.........++....++++++..+|+|++++|....+..++. .+.
T Consensus 5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l 84 (301)
T 3cky_A 5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGGV 84 (301)
T ss_dssp CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcchH
Confidence 579999999999999999999999999999986433322223555567899999999999999998877777774 356
Q ss_pred hhccCCCcEEEEcCCChhhcHHHHHHHHHcC
Q 007040 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDG 271 (620)
Q Consensus 241 L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G 271 (620)
...+++|.++|+++.|...+.+.|.+.+...
T Consensus 85 ~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~ 115 (301)
T 3cky_A 85 LSACKAGTVIVDMSSVSPSSTLKMAKVAAEK 115 (301)
T ss_dssp HHHSCTTCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence 6779999999999999877788888888764
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-09 Score=116.92 Aligned_cols=178 Identities=12% Similarity=0.140 Sum_probs=111.8
Q ss_pred ceEEEEecCCCCCHHHHhcCCCCeEEEEe-cccCCccchHHHHhcCcEEEEc---CCCC-h------HHHHHHHH--HHH
Q 007040 60 AAAVLLHSLAYLPRAAQRRLRPYQLILCL-GSSDRTVDSALAADLGLRLIHV---DTSR-A------EEIADTVM--ALL 126 (620)
Q Consensus 60 AdaVlv~s~~~l~~e~l~~lp~LK~I~~~-gaG~D~VD~~aa~erGI~VtNt---pg~~-a------~aVAE~aL--aLi 126 (620)
+|+|+.-. ..+++.++.++.=+++.+. --..+.--++++.++||...-- |... + .++||.+= +.+
T Consensus 85 adiIlkVk--~p~~~e~~~l~~g~~l~~~lh~~~~~~l~~~l~~~~it~ia~E~i~~~~~~~~l~~l~~~s~iAGy~Av~ 162 (381)
T 3p2y_A 85 ADVVVKVN--PPTSDEISQLKPGSVLIGFLAPRTQPELASRLRIADVTAFAMESIPRISRAQTMDALSSQANVAGYKAVL 162 (381)
T ss_dssp SSEEECSS--CCCHHHHTTSCTTCEEEECCCTTTCHHHHHHHHHTTCEEEEGGGCCSSGGGGGGCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeC--CCChhHHhhccCCCEEEEEeccccCHHHHHHHHHCCCeEEEeeccccccccccceeecchhHHHHHHHHH
Confidence 56655432 3566778888665554443 2222322346678889988662 3211 1 23333332 111
Q ss_pred HHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCc
Q 007040 127 LGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA 206 (620)
Q Consensus 127 Lal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~ 206 (620)
++.. .-+...+ .+..+...+.+.+|+|||+|.||..+|+.|+++|++|++||+++...+.....|.
T Consensus 163 ~aa~-----------~l~~~~~---~l~~~~~~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa 228 (381)
T 3p2y_A 163 LGAS-----------LSTRFVP---MLTTAAGTVKPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGA 228 (381)
T ss_dssp HHHH-----------HCSSCSS---CEECSSCEECCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTC
T ss_pred HHHH-----------Hhhhhhh---hhhcccCCcCCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC
Confidence 1111 0111111 1112234679999999999999999999999999999999998754321111222
Q ss_pred ee-------------------------cCCHHhhhcCCcEEEEcc--cCChhhHhhcCHHHhhccCCCcEEEEcC
Q 007040 207 RR-------------------------MDTLNDLLAASDVISLHC--AVTDETIQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 207 ~~-------------------------~~sL~eLL~~sDvVil~l--PlT~~T~~lI~~~~L~~MK~gAiLINvg 254 (620)
.. ..++.++++.+|+||.++ |.. .+..+|+++.++.||||++|||++
T Consensus 229 ~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e~l~~aDIVI~tv~iPg~-~ap~Lvt~emv~~MkpGsVIVDvA 302 (381)
T 3p2y_A 229 QWLDLGIDAAGEGGYARELSEAERAQQQQALEDAITKFDIVITTALVPGR-PAPRLVTAAAATGMQPGSVVVDLA 302 (381)
T ss_dssp EECCCC-------------CHHHHHHHHHHHHHHHTTCSEEEECCCCTTS-CCCCCBCHHHHHTSCTTCEEEETT
T ss_pred eEEeccccccccccchhhhhHHHHhhhHHHHHHHHhcCCEEEECCCCCCc-ccceeecHHHHhcCCCCcEEEEEe
Confidence 11 235789999999999885 532 356789999999999999999996
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.97 E-value=8.4e-11 Score=123.36 Aligned_cols=136 Identities=15% Similarity=0.012 Sum_probs=93.8
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCC-CCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhc
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGK-GKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII 236 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~-~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI 236 (620)
..+.+++|||||+|.||.++|..|+..|++|++|+++... .......|.... ++.++++.||+|++++|... ...++
T Consensus 12 ~~l~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~-~~~e~~~~aDvVilavp~~~-~~~v~ 89 (338)
T 1np3_A 12 SIIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILTPDEF-QGRLY 89 (338)
T ss_dssp HHHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECSCHHH-HHHHH
T ss_pred chhcCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEc-cHHHHHhcCCEEEEeCCcHH-HHHHH
Confidence 4578999999999999999999999999999999998643 121222344444 88899999999999999654 35666
Q ss_pred CHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCC-CCCCCCc---cccC---CCcEEEcCCCC
Q 007040 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE-GPQWMEA---WVRE---MPNVLILPRSA 304 (620)
Q Consensus 237 ~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E-~P~~~~s---pL~~---~pNVIlTPHiA 304 (620)
..+....|++|++||+++ | +.. ....+ ..+..+||+. +|..+.+ .++. -.++++|||..
T Consensus 90 ~~~i~~~l~~~~ivi~~~-g--v~~--~~~~~----~~~~~~~vv~~~P~gp~~a~~~l~~~G~g~~~ii~~~~~ 155 (338)
T 1np3_A 90 KEEIEPNLKKGATLAFAH-G--FSI--HYNQV----VPRADLDVIMIAPKAPGHTVRSEFVKGGGIPDLIAIYQD 155 (338)
T ss_dssp HHHTGGGCCTTCEEEESC-C--HHH--HTTSS----CCCTTCEEEEEEESSCSHHHHHHHHTTCCCCEEEEEEEC
T ss_pred HHHHHhhCCCCCEEEEcC-C--chh--HHHhh----cCCCCcEEEeccCCCCchhHHHHHhccCCCeEEEEecCC
Confidence 545667899999999884 3 222 11111 1133455553 2433333 3444 66788999854
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=7.4e-10 Score=121.76 Aligned_cols=114 Identities=17% Similarity=0.179 Sum_probs=92.9
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccC----CceecCCHHhhhcC---CcEEEEcccCChhh
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPS----AARRMDTLNDLLAA---SDVISLHCAVTDET 232 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~----g~~~~~sL~eLL~~---sDvVil~lPlT~~T 232 (620)
...++|||||+|.||..||..|...|++|.+||+++...+..... ++....+++++++. +|+|++++|....+
T Consensus 13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v 92 (480)
T 2zyd_A 13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGT 92 (480)
T ss_dssp --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSHH
T ss_pred cCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHHH
Confidence 456789999999999999999999999999999986443322111 45566789998887 99999999988788
Q ss_pred HhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 233 IQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 233 ~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
..++. +....+++|.+|||++.|...+...+.+.|.+..+.
T Consensus 93 ~~vl~-~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~ 133 (480)
T 2zyd_A 93 DAAID-SLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN 133 (480)
T ss_dssp HHHHH-HHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred HHHHH-HHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCC
Confidence 88884 567889999999999999988888898888875443
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=7.3e-10 Score=111.59 Aligned_cols=106 Identities=13% Similarity=0.111 Sum_probs=85.3
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQ 242 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~ 242 (620)
++|||||+|.||..+|..|.. |++|++||++..........+..... +.+++..+|+|++++|....+..++ .....
T Consensus 2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~D~vi~~v~~~~~~~~v~-~~l~~ 78 (289)
T 2cvz_A 2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAV-PLERVAEARVIFTCLPTTREVYEVA-EALYP 78 (289)
T ss_dssp CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEEC-CGGGGGGCSEEEECCSSHHHHHHHH-HHHTT
T ss_pred CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccC-HHHHHhCCCEEEEeCCChHHHHHHH-HHHHh
Confidence 469999999999999999999 99999999987443322112333344 7788899999999999776677766 45667
Q ss_pred ccCCCcEEEEcCCChhhcHHHHHHHHHcC
Q 007040 243 HIKPGAFLVNTGSSQLLDDCAVKQLLIDG 271 (620)
Q Consensus 243 ~MK~gAiLINvgRG~vVDe~AL~~AL~~G 271 (620)
.+++|.++|+++.+...+.+.|.+.+.+.
T Consensus 79 ~l~~~~~vv~~s~~~~~~~~~l~~~~~~~ 107 (289)
T 2cvz_A 79 YLREGTYWVDATSGEPEASRRLAERLREK 107 (289)
T ss_dssp TCCTTEEEEECSCCCHHHHHHHHHHHHTT
T ss_pred hCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence 79999999999999888888899988874
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.3e-09 Score=119.84 Aligned_cols=146 Identities=15% Similarity=0.117 Sum_probs=99.9
Q ss_pred ecccCCccc-hHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEE
Q 007040 88 LGSSDRTVD-SALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLG 166 (620)
Q Consensus 88 ~gaG~D~VD-~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVG 166 (620)
+++|+..+. ........|+|+|+........-+...+.--.+...+. +. . ...+.|++++
T Consensus 209 TttGv~rL~~~~~~g~L~iPvinvnDs~tK~~fDn~yGt~~sl~dgi~---r~---t-------------g~~L~GKtVv 269 (488)
T 3ond_A 209 TTTGVKRLYQMQANGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLM---RA---T-------------DVMIAGKVAV 269 (488)
T ss_dssp SHHHHHHHHHHHHTTCCCSCEEECTTSHHHHTTHHHHHHHHHHHHHHH---HH---H-------------CCCCTTCEEE
T ss_pred ccccHHHHHHHHHcCCCCCceecccchhhhhHhhhhccccHHHHHHHH---HH---c-------------CCcccCCEEE
Confidence 345665442 12223568999999876555433322222111111110 00 0 1247999999
Q ss_pred EEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCC
Q 007040 167 IVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKP 246 (620)
Q Consensus 167 IIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~ 246 (620)
|+|+|.||+.+|++|+++|++|+++|+++.........+. ...++++++..+|+|+.+.. +.++|+.+.|..||+
T Consensus 270 VtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~-dv~~lee~~~~aDvVi~atG----~~~vl~~e~l~~mk~ 344 (488)
T 3ond_A 270 VAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGL-QVLTLEDVVSEADIFVTTTG----NKDIIMLDHMKKMKN 344 (488)
T ss_dssp EECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC-EECCGGGTTTTCSEEEECSS----CSCSBCHHHHTTSCT
T ss_pred EECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCC-ccCCHHHHHHhcCEEEeCCC----ChhhhhHHHHHhcCC
Confidence 9999999999999999999999999997643322222333 34588999999999997643 567899999999999
Q ss_pred CcEEEEcCCCh
Q 007040 247 GAFLVNTGSSQ 257 (620)
Q Consensus 247 gAiLINvgRG~ 257 (620)
+++++|+|++.
T Consensus 345 gaiVvNaG~~~ 355 (488)
T 3ond_A 345 NAIVCNIGHFD 355 (488)
T ss_dssp TEEEEESSSTT
T ss_pred CeEEEEcCCCC
Confidence 99999999983
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.2e-09 Score=112.13 Aligned_cols=111 Identities=14% Similarity=0.202 Sum_probs=89.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCH--HH
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA--EC 240 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~--~~ 240 (620)
++|||||+|.||..+|..|...|++|++||++..........+.....++.+++..+|+|++++|....+..++.. ..
T Consensus 31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~~ 110 (316)
T 2uyy_A 31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGV 110 (316)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchhH
Confidence 6799999999999999999999999999999875443222234555668889999999999999977777776643 24
Q ss_pred hhccCCCcEEEEcCCChhhcHHHHHHHHHcCCc
Q 007040 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTL 273 (620)
Q Consensus 241 L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I 273 (620)
+..++++.++|+++.+.......|.+.+....+
T Consensus 111 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~ 143 (316)
T 2uyy_A 111 LQGIRPGKCYVDMSTVDADTVTELAQVIVSRGG 143 (316)
T ss_dssp GGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTC
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 577899999999999887778888888865433
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.9e-09 Score=119.08 Aligned_cols=111 Identities=12% Similarity=0.208 Sum_probs=92.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc-----CCceecCCHHhhhcC---CcEEEEcccCChhhHh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP-----SAARRMDTLNDLLAA---SDVISLHCAVTDETIQ 234 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~-----~g~~~~~sL~eLL~~---sDvVil~lPlT~~T~~ 234 (620)
.+|||||+|.||..||..|...|++|.+||+++...+.... .++....++.++++. +|+|++++|....+..
T Consensus 11 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~ 90 (497)
T 2p4q_A 11 ADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPVDA 90 (497)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHHHH
T ss_pred CCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHHHH
Confidence 46999999999999999999999999999998754432222 345556789998877 9999999998888888
Q ss_pred hcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 235 IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 235 lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
++ ......+++|.+||+++.+...+...+.+.|.+..+.
T Consensus 91 vl-~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~ 129 (497)
T 2p4q_A 91 LI-NQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGIL 129 (497)
T ss_dssp HH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred HH-HHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCc
Confidence 88 4577889999999999999988888898888775443
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=3e-09 Score=116.58 Aligned_cols=111 Identities=20% Similarity=0.250 Sum_probs=90.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccC----CceecCCHHhhhcC---CcEEEEcccCChhhHhh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPS----AARRMDTLNDLLAA---SDVISLHCAVTDETIQI 235 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~----g~~~~~sL~eLL~~---sDvVil~lPlT~~T~~l 235 (620)
++|||||+|.||+.+|..|...|++|.+||++.......... ++....++++++.. +|+|++++|....+..+
T Consensus 6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~v 85 (474)
T 2iz1_A 6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDAT 85 (474)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHHH
T ss_pred CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHHH
Confidence 579999999999999999999999999999986443311111 45556789998876 99999999988788887
Q ss_pred cCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 236 INAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 236 I~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
+ .+....+++|.+||+++.|...+...+.+.+.+..+.
T Consensus 86 l-~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~ 123 (474)
T 2iz1_A 86 I-KSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGIN 123 (474)
T ss_dssp H-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCE
T ss_pred H-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCe
Confidence 7 4566789999999999999888888888888765443
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.8e-10 Score=111.16 Aligned_cols=94 Identities=19% Similarity=0.194 Sum_probs=75.2
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHH
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAE 239 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~ 239 (620)
+.+++|||||+|.||+.+|+.|..+|++|++|+|+.. .......++... ++.++++.+|+|++++|.. .+..++
T Consensus 17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~-~~~~~~~~aDvVilav~~~-~~~~v~--- 90 (201)
T 2yjz_A 17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLLPRGAEVL-CYSEAASRSDVIVLAVHRE-HYDFLA--- 90 (201)
Confidence 6788999999999999999999999999999999875 222222334333 7888999999999999975 566766
Q ss_pred HhhccCCCcEEEEcCCChhh
Q 007040 240 CLQHIKPGAFLVNTGSSQLL 259 (620)
Q Consensus 240 ~L~~MK~gAiLINvgRG~vV 259 (620)
.+..+++++++||+++|-..
T Consensus 91 ~l~~~~~~~ivI~~~~G~~~ 110 (201)
T 2yjz_A 91 ELADSLKGRVLIDVSNNQKM 110 (201)
Confidence 24557789999999999753
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=4.7e-09 Score=115.24 Aligned_cols=111 Identities=14% Similarity=0.164 Sum_probs=90.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc-----CCceecCCHHhhhc---CCcEEEEcccCChhhHh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP-----SAARRMDTLNDLLA---ASDVISLHCAVTDETIQ 234 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~-----~g~~~~~sL~eLL~---~sDvVil~lPlT~~T~~ 234 (620)
++|||||+|.||..+|..|...|++|.+||++......... .++....++++++. .+|+|++++|....+..
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~ 82 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN 82 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHHH
Confidence 57999999999999999999999999999998754332211 34555678988874 89999999998878888
Q ss_pred hcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 235 IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 235 lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
++. .....+++|.+||+++.|...+...+.+.+.+..+.
T Consensus 83 vl~-~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~ 121 (482)
T 2pgd_A 83 FIE-KLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGIL 121 (482)
T ss_dssp HHH-HHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred HHH-HHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence 874 566789999999999999888888888888775443
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=98.84 E-value=9.8e-10 Score=109.70 Aligned_cols=95 Identities=11% Similarity=0.158 Sum_probs=68.7
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCC--------------CCccc-cCCceecCCHHhhhcCCcEE
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGK--------------GKVTF-PSAARRMDTLNDLLAASDVI 222 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~--------------~~~~~-~~g~~~~~sL~eLL~~sDvV 222 (620)
.++.+++|||||+|.||..+|+.|...|++|++||+++.. ..... ..+.....++.+++++||+|
T Consensus 15 ~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aDvV 94 (245)
T 3dtt_A 15 LYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAAGAELV 94 (245)
T ss_dssp ----CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHHHCSEE
T ss_pred cccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHhcCCEE
Confidence 5789999999999999999999999999999999998753 11001 11334456889999999999
Q ss_pred EEcccCChhhHhhcCHHH-hhccCCCcEEEEcCC
Q 007040 223 SLHCAVTDETIQIINAEC-LQHIKPGAFLVNTGS 255 (620)
Q Consensus 223 il~lPlT~~T~~lI~~~~-L~~MK~gAiLINvgR 255 (620)
++++|...... .+. +. ...+ +|.++|+++-
T Consensus 95 ilavp~~~~~~-~~~-~i~~~~l-~g~ivi~~s~ 125 (245)
T 3dtt_A 95 VNATEGASSIA-ALT-AAGAENL-AGKILVDIAN 125 (245)
T ss_dssp EECSCGGGHHH-HHH-HHCHHHH-TTSEEEECCC
T ss_pred EEccCcHHHHH-HHH-Hhhhhhc-CCCEEEECCC
Confidence 99999765433 322 22 2334 8999999993
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.83 E-value=4.7e-09 Score=108.72 Aligned_cols=128 Identities=18% Similarity=0.117 Sum_probs=88.5
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccC-------CceecCCHHhhhcCCcEEEEcccCChhhH
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPS-------AARRMDTLNDLLAASDVISLHCAVTDETI 233 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~-------g~~~~~sL~eLL~~sDvVil~lPlT~~T~ 233 (620)
+.++|||||+|.||..||..|. .|++|++||+++...+..... ++....++.+ +++||+|+.++|...+.+
T Consensus 11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~vk 88 (293)
T 1zej_A 11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNTK 88 (293)
T ss_dssp -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHHHH
T ss_pred CCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHHH
Confidence 6789999999999999999999 999999999987543322221 3444567876 889999999999998877
Q ss_pred hhcCHHHhhccCCCcEEE-EcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEEEcCCC
Q 007040 234 QIINAECLQHIKPGAFLV-NTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRS 303 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLI-NvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVIlTPHi 303 (620)
..+-.+ +..+ |+++|+ |+|.-.+ ..+.+++. ......++-.+. |++ .++-|.+.|+-
T Consensus 89 ~~l~~~-l~~~-~~~IlasntSti~~---~~~a~~~~-~~~r~~G~Hf~~-Pv~------~~~lveiv~g~ 146 (293)
T 1zej_A 89 VEVLRE-VERL-TNAPLCSNTSVISV---DDIAERLD-SPSRFLGVHWMN-PPH------VMPLVEIVISR 146 (293)
T ss_dssp HHHHHH-HHTT-CCSCEEECCSSSCH---HHHHTTSS-CGGGEEEEEECS-STT------TCCEEEEEECT
T ss_pred HHHHHH-HhcC-CCCEEEEECCCcCH---HHHHHHhh-cccceEeEEecC-ccc------cCCEEEEECCC
Confidence 765443 5667 999995 8877554 34444332 222334444444 322 45667777753
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.81 E-value=2.8e-09 Score=106.44 Aligned_cols=102 Identities=14% Similarity=0.049 Sum_probs=78.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCC--CCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHH
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVP--EGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~--~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~ 240 (620)
++|||||+|.||..+|..|...|++|++||+. ..........+.. .++.+++..+|+|++++|.......+ .+.
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~aDvvi~~v~~~~~~~~~--~~~ 76 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT--ETSEEDVYSCPVVISAVTPGVALGAA--RRA 76 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE--ECCHHHHHTSSEEEECSCGGGHHHHH--HHH
T ss_pred CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCc--CCHHHHHhcCCEEEEECCCHHHHHHH--HHH
Confidence 47999999999999999999999999999873 2111111112333 57888999999999999987665554 456
Q ss_pred hhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 241 L~~MK~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
+..+++ ++|+++.+...+.+.|.+.+..
T Consensus 77 ~~~~~~--~vi~~s~~~~~~~~~l~~~~~~ 104 (264)
T 1i36_A 77 GRHVRG--IYVDINNISPETVRMASSLIEK 104 (264)
T ss_dssp HTTCCS--EEEECSCCCHHHHHHHHHHCSS
T ss_pred HHhcCc--EEEEccCCCHHHHHHHHHHHhh
Confidence 667876 9999998887777888888765
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.5e-09 Score=109.38 Aligned_cols=158 Identities=13% Similarity=-0.015 Sum_probs=108.7
Q ss_pred CCCHHHHhcCCCCeEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCC
Q 007040 70 YLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGS 149 (620)
Q Consensus 70 ~l~~e~l~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~ 149 (620)
+++.+++..++.+.-++....|++.++. +.| +..|+|++. .+++.++.+. .
T Consensus 62 P~k~~i~~~~~~l~~~a~~~gavn~i~~----~~g----~~~g~ntd~-----~g~~~~l~~~------------~---- 112 (263)
T 2d5c_A 62 PLKEAALAHLDWVSPEAQRIGAVNTVLQ----VEG----RLFGFNTDA-----PGFLEALKAG------------G---- 112 (263)
T ss_dssp TCTTGGGGGCSEECHHHHHHTCCCEEEE----ETT----EEEEECCHH-----HHHHHHHHHT------------T----
T ss_pred cCHHHHHHHHHHHhHHHHHhCCCCcEEc----cCC----eEEEeCCCH-----HHHHHHHHHh------------C----
Confidence 6778888888887777777778888764 234 223455543 2444443310 0
Q ss_pred CCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-cCCceecCCHHhhhcCCcEEEEcccC
Q 007040 150 VQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF-PSAARRMDTLNDLLAASDVISLHCAV 228 (620)
Q Consensus 150 ~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~-~~g~~~~~sL~eLL~~sDvVil~lPl 228 (620)
.++.| +++|||+|.||+++|+.|..+|++|+++|++........ ..+.. ..+++++ .++|+|++++|.
T Consensus 113 --------~~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~-~~~~~~~-~~~Divi~~tp~ 181 (263)
T 2d5c_A 113 --------IPLKG-PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLR-AVPLEKA-REARLLVNATRV 181 (263)
T ss_dssp --------CCCCS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCE-ECCGGGG-GGCSEEEECSST
T ss_pred --------CCCCC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccc-hhhHhhc-cCCCEEEEccCC
Confidence 14688 999999999999999999999999999999864322111 11222 4578888 999999999998
Q ss_pred Ch--hhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCC
Q 007040 229 TD--ETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGT 272 (620)
Q Consensus 229 T~--~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~ 272 (620)
.. .+...+. +..+++|+++|+++.+.. +. .|.++++...
T Consensus 182 ~~~~~~~~~l~---~~~l~~g~~viD~~~~p~-~t-~l~~~a~~~g 222 (263)
T 2d5c_A 182 GLEDPSASPLP---AELFPEEGAAVDLVYRPL-WT-RFLREAKAKG 222 (263)
T ss_dssp TTTCTTCCSSC---GGGSCSSSEEEESCCSSS-SC-HHHHHHHHTT
T ss_pred CCCCCCCCCCC---HHHcCCCCEEEEeecCCc-cc-HHHHHHHHCc
Confidence 73 2334453 567899999999998743 33 4777766543
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.80 E-value=5.7e-09 Score=114.58 Aligned_cols=111 Identities=20% Similarity=0.224 Sum_probs=89.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccC-C-------ceecCCHHhhhc---CCcEEEEcccCChh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPS-A-------ARRMDTLNDLLA---ASDVISLHCAVTDE 231 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~-g-------~~~~~sL~eLL~---~sDvVil~lPlT~~ 231 (620)
++|||||+|.||..+|..|...|++|.+||++.......... + +....++++++. .+|+|++++|....
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~ 81 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA 81 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHH
Confidence 469999999999999999999999999999976432211111 2 445678888887 49999999998877
Q ss_pred hHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 232 TIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 232 T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
+..++ .+....+++|.+||+++.|...+...+.+.+.+..+.
T Consensus 82 v~~vl-~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~ 123 (478)
T 1pgj_A 82 TDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLR 123 (478)
T ss_dssp HHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCE
T ss_pred HHHHH-HHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCe
Confidence 88877 4566789999999999999888888888888875443
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-08 Score=111.86 Aligned_cols=137 Identities=11% Similarity=0.136 Sum_probs=93.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhC--CCEEEEECCCCCCCCcc---------------cc----CCceecCCHHhhhcCCcE
Q 007040 163 LVLGIVGRSASARALATRSLSF--KMSVLYFDVPEGKGKVT---------------FP----SAARRMDTLNDLLAASDV 221 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf--G~~V~~~dr~~~~~~~~---------------~~----~g~~~~~sL~eLL~~sDv 221 (620)
++|+|||+|.||..+|..|... |++|++||++....... .. .+.....++.++++.||+
T Consensus 6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aDv 85 (467)
T 2q3e_A 6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADL 85 (467)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCCE
Confidence 5899999999999999999987 89999999975322210 00 133445678888999999
Q ss_pred EEEcccCChhhHhh-----------c--CHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCC-
Q 007040 222 ISLHCAVTDETIQI-----------I--NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWM- 287 (620)
Q Consensus 222 Vil~lPlT~~T~~l-----------I--~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~- 287 (620)
|++|+|......+. . -......|++|+++|++++..+-..+.+.+.|.+....+....|...|...
T Consensus 86 ViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~~~d~~V~~~Pe~~~ 165 (467)
T 2q3e_A 86 VFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLA 165 (467)
T ss_dssp EEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCTTCEEEEEECCCCCC
T ss_pred EEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCCCCCeEEEeCHHHhh
Confidence 99999965433221 1 123556789999999999988877888888887754322222233333221
Q ss_pred -C---ccccCCCcEEE
Q 007040 288 -E---AWVREMPNVLI 299 (620)
Q Consensus 288 -~---spL~~~pNVIl 299 (620)
. +.+...++|++
T Consensus 166 ~G~~~~d~~~~~rivv 181 (467)
T 2q3e_A 166 EGTAIKDLKNPDRVLI 181 (467)
T ss_dssp TTSHHHHHHSCSCEEE
T ss_pred cccchhhccCCCEEEE
Confidence 1 13455666764
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.71 E-value=4.9e-09 Score=104.91 Aligned_cols=101 Identities=12% Similarity=0.113 Sum_probs=77.9
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCE-EEEECCCCCCCCcccc-CCceecCCHHhhhcCCcEEEEcccCChhhHhhc
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMS-VLYFDVPEGKGKVTFP-SAARRMDTLNDLLAASDVISLHCAVTDETIQII 236 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~-V~~~dr~~~~~~~~~~-~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI 236 (620)
++.+++|||||+|.||..+|..|...|++ |.+||++......... .++....++++++.++|+|++++|.. ....++
T Consensus 7 ~~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~-~~~~v~ 85 (266)
T 3d1l_A 7 SIEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDS-AFAELL 85 (266)
T ss_dssp CGGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHH-HHHHHH
T ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHH-HHHHHH
Confidence 35678999999999999999999988998 9999998643321111 14455678889999999999999966 345555
Q ss_pred CHHHhhccCCCcEEEEcCCChhhcH
Q 007040 237 NAECLQHIKPGAFLVNTGSSQLLDD 261 (620)
Q Consensus 237 ~~~~L~~MK~gAiLINvgRG~vVDe 261 (620)
......+++++++|+++.|-..+.
T Consensus 86 -~~l~~~~~~~~ivv~~s~~~~~~~ 109 (266)
T 3d1l_A 86 -QGIVEGKREEALMVHTAGSIPMNV 109 (266)
T ss_dssp -HHHHTTCCTTCEEEECCTTSCGGG
T ss_pred -HHHHhhcCCCcEEEECCCCCchHH
Confidence 345567889999999999876543
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=98.69 E-value=5.8e-09 Score=114.63 Aligned_cols=97 Identities=13% Similarity=0.162 Sum_probs=74.1
Q ss_pred eeecC-cEEEEEeCChhhHHHHHHHhhC------CCEEEEECCCCC-CCCccccCCcee----cCCHHhhhcCCcEEEEc
Q 007040 158 RRCRG-LVLGIVGRSASARALATRSLSF------KMSVLYFDVPEG-KGKVTFPSAARR----MDTLNDLLAASDVISLH 225 (620)
Q Consensus 158 ~~L~G-ktVGIIGlG~IG~~vA~~Lkaf------G~~V~~~dr~~~-~~~~~~~~g~~~----~~sL~eLL~~sDvVil~ 225 (620)
..|.| ++|||||+|.||.++|+.|+.. |++|++.++... ....+...|+.. ..++.+++++||+|+++
T Consensus 49 ~~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVILa 128 (525)
T 3fr7_A 49 EAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLL 128 (525)
T ss_dssp HHTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEEC
T ss_pred HHhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEEC
Confidence 46899 9999999999999999999988 999886665432 222222344442 25789999999999999
Q ss_pred ccCChhhHhhcCHHHhhccCCCcEEEEcCCCh
Q 007040 226 CAVTDETIQIINAECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 226 lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~ 257 (620)
+|..... .++. +.+..||+|++| -.+-|-
T Consensus 129 VP~~~~~-eVl~-eI~p~LK~GaIL-s~AaGf 157 (525)
T 3fr7_A 129 ISDAAQA-DNYE-KIFSHMKPNSIL-GLSHGF 157 (525)
T ss_dssp SCHHHHH-HHHH-HHHHHSCTTCEE-EESSSH
T ss_pred CChHHHH-HHHH-HHHHhcCCCCeE-EEeCCC
Confidence 9987654 4665 688999999994 566663
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=98.65 E-value=3.3e-08 Score=96.58 Aligned_cols=80 Identities=11% Similarity=0.212 Sum_probs=63.7
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
.++.+++|+|||+|.||..+|..|...|++|++||++.. .+++||+|++++| ...+..++.
T Consensus 15 ~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~------------------~~~~aD~vi~av~-~~~~~~v~~ 75 (209)
T 2raf_A 15 LYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ------------------ATTLGEIVIMAVP-YPALAALAK 75 (209)
T ss_dssp -----CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC------------------CSSCCSEEEECSC-HHHHHHHHH
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH------------------HhccCCEEEEcCC-cHHHHHHHH
Confidence 457899999999999999999999999999999998753 5578999999999 666777664
Q ss_pred HHHhhccCCCcEEEEcCCChh
Q 007040 238 AECLQHIKPGAFLVNTGSSQL 258 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~v 258 (620)
+....++ ++++|++++|--
T Consensus 76 -~l~~~~~-~~~vi~~~~g~~ 94 (209)
T 2raf_A 76 -QYATQLK-GKIVVDITNPLN 94 (209)
T ss_dssp -HTHHHHT-TSEEEECCCCBC
T ss_pred -HHHHhcC-CCEEEEECCCCC
Confidence 3445677 999999999654
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.1e-07 Score=104.35 Aligned_cols=140 Identities=16% Similarity=0.045 Sum_probs=93.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC--------ccccC-------------CceecCCHHhhhcCCcE
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK--------VTFPS-------------AARRMDTLNDLLAASDV 221 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~--------~~~~~-------------g~~~~~sL~eLL~~sDv 221 (620)
++|||||+|.||..||..+...|++|++||++..... ..... .+....+++ .+++||+
T Consensus 55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~aDl 133 (460)
T 3k6j_A 55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSNCDL 133 (460)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHccCCE
Confidence 6899999999999999999999999999999875110 00011 123356775 6889999
Q ss_pred EEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEEEcC
Q 007040 222 ISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILP 301 (620)
Q Consensus 222 Vil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVIlTP 301 (620)
||.++|...+.+.-+-.+....++++++|+..+.+ +....+.+.+.. ....+++..|. |++ .++-|.|.|
T Consensus 134 VIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSs--l~i~~ia~~~~~-p~r~iG~Hffn-Pv~------~m~LvEIv~ 203 (460)
T 3k6j_A 134 IVESVIEDMKLKKELFANLENICKSTCIFGTNTSS--LDLNEISSVLRD-PSNLVGIHFFN-PAN------VIRLVEIIY 203 (460)
T ss_dssp EEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS--SCHHHHHTTSSS-GGGEEEEECCS-STT------TCCEEEEEC
T ss_pred EEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCC--hhHHHHHHhccC-CcceEEEEecc-hhh------hCCEEEEEe
Confidence 99999988877665546677789999999644333 333455555432 33456666666 322 345567777
Q ss_pred CCCCCcHHHHHHH
Q 007040 302 RSADYSEEVWMEI 314 (620)
Q Consensus 302 HiAg~T~ea~~~~ 314 (620)
+-. .++++.+.+
T Consensus 204 g~~-Ts~e~~~~~ 215 (460)
T 3k6j_A 204 GSH-TSSQAIATA 215 (460)
T ss_dssp CSS-CCHHHHHHH
T ss_pred CCC-CCHHHHHHH
Confidence 532 344444443
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=7.8e-08 Score=103.98 Aligned_cols=107 Identities=15% Similarity=0.057 Sum_probs=79.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc-------------------CC-ceecCCHHhhhcCCcEE
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP-------------------SA-ARRMDTLNDLLAASDVI 222 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~-------------------~g-~~~~~sL~eLL~~sDvV 222 (620)
++|+|||+|.||..+|..|...|++|++||+++........ .+ .....++.++++.||+|
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvv 80 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS 80 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEE
Confidence 47999999999999999999999999999997532221000 12 34456788889999999
Q ss_pred EEcccCChh---------hHhhcCHHHhhccCC---CcEEEEcCCChhhc-HHHHHHHHHc
Q 007040 223 SLHCAVTDE---------TIQIINAECLQHIKP---GAFLVNTGSSQLLD-DCAVKQLLID 270 (620)
Q Consensus 223 il~lPlT~~---------T~~lI~~~~L~~MK~---gAiLINvgRG~vVD-e~AL~~AL~~ 270 (620)
++++|.... +...+ ......|++ ++++|+.+...+-. .+.+.+.|..
T Consensus 81 iiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~ 140 (436)
T 1mv8_A 81 FICVGTPSKKNGDLDLGYIETVC-REIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIED 140 (436)
T ss_dssp EECCCCCBCTTSSBCCHHHHHHH-HHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHH
T ss_pred EEEcCCCcccCCCcchHHHHHHH-HHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHH
Confidence 999996654 34433 345556888 99999998766655 5667777765
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=2e-08 Score=98.40 Aligned_cols=95 Identities=22% Similarity=0.264 Sum_probs=71.3
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHH
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~ 240 (620)
.+++|+|||+|.||+.+|+.|...|++|+++|++..........++... ++.+++..+|+|++++|. .....++.
T Consensus 27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~~DvVi~av~~-~~~~~v~~--- 101 (215)
T 2vns_A 27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVT-FQEEAVSSPEVIFVAVFR-EHYSSLCS--- 101 (215)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEE-EHHHHTTSCSEEEECSCG-GGSGGGGG---
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcee-cHHHHHhCCCEEEECCCh-HHHHHHHH---
Confidence 4578999999999999999999999999999998643322222244333 788899999999999995 34555553
Q ss_pred hhccCCCcEEEEcCCChhhc
Q 007040 241 LQHIKPGAFLVNTGSSQLLD 260 (620)
Q Consensus 241 L~~MK~gAiLINvgRG~vVD 260 (620)
+..+.+++++|++++|-..+
T Consensus 102 l~~~~~~~~vv~~s~g~~~~ 121 (215)
T 2vns_A 102 LSDQLAGKILVDVSNPTEQE 121 (215)
T ss_dssp GHHHHTTCEEEECCCCCHHH
T ss_pred HHHhcCCCEEEEeCCCcccc
Confidence 44334899999999987554
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=98.59 E-value=2.3e-08 Score=101.48 Aligned_cols=93 Identities=8% Similarity=0.110 Sum_probs=72.1
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHh
Q 007040 163 LVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECL 241 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L 241 (620)
++|||||+ |.||..+|+.|...|++|++||++..........++.. .++.+++..+|+|++++|... +..++ .+..
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~-~~~~~~~~~aDvVi~av~~~~-~~~v~-~~l~ 88 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPL-TDGDGWIDEADVVVLALPDNI-IEKVA-EDIV 88 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCC-CCSSGGGGTCSEEEECSCHHH-HHHHH-HHHG
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCc-CCHHHHhcCCCEEEEcCCchH-HHHHH-HHHH
Confidence 58999999 99999999999999999999999864332111123322 367788999999999999654 55665 3556
Q ss_pred hccCCCcEEEEcCCChh
Q 007040 242 QHIKPGAFLVNTGSSQL 258 (620)
Q Consensus 242 ~~MK~gAiLINvgRG~v 258 (620)
..+++++++|+++.|..
T Consensus 89 ~~l~~~~ivv~~s~~~~ 105 (286)
T 3c24_A 89 PRVRPGTIVLILDAAAP 105 (286)
T ss_dssp GGSCTTCEEEESCSHHH
T ss_pred HhCCCCCEEEECCCCch
Confidence 67899999999888763
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=98.59 E-value=5.3e-08 Score=99.06 Aligned_cols=154 Identities=13% Similarity=0.050 Sum_probs=101.5
Q ss_pred ceEEEEecCCCCCHHHHhcCCCCeEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHH
Q 007040 60 AAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARH 139 (620)
Q Consensus 60 AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~ 139 (620)
.+.+.++ .++..+++..+..+.-++....+++.++. +.|- ..|+|++.. +++.++.+ .
T Consensus 66 ~~G~nvt--iP~k~~i~~~ld~l~~~A~~~gavnti~~----~~g~----~~g~nTd~~-----G~~~~l~~-------~ 123 (275)
T 2hk9_A 66 VKGINVT--VPFKEEIIPLLDYVEDTAKEIGAVNTVKF----ENGK----AYGYNTDWI-----GFLKSLKS-------L 123 (275)
T ss_dssp CCEEEEC--TTSTTTTGGGCSEECHHHHHHTCCCEEEE----ETTE----EEEECCHHH-----HHHHHHHH-------H
T ss_pred CCEEEEC--ccCHHHHHHHHHHhhHHHHHhCCcceEEe----eCCE----EEeecCCHH-----HHHHHHHH-------h
Confidence 4466555 35667777777766555554556665543 2342 234455332 33333321 0
Q ss_pred HHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-cCCceecCCHHhhhcC
Q 007040 140 ALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF-PSAARRMDTLNDLLAA 218 (620)
Q Consensus 140 ~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~-~~g~~~~~sL~eLL~~ 218 (620)
. ..+.|++++|||.|.||+++|..|...|++|++|||+........ ..++....++.+++++
T Consensus 124 -----~------------~~~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~ 186 (275)
T 2hk9_A 124 -----I------------PEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDK 186 (275)
T ss_dssp -----C------------TTGGGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCEEECSCGGGTGGG
T ss_pred -----C------------CCcCCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCeeehhHHhhhcC
Confidence 0 136789999999999999999999999999999999864322111 1133444478889999
Q ss_pred CcEEEEcccCChh--hHhhcCHHHhhccCCCcEEEEcCC
Q 007040 219 SDVISLHCAVTDE--TIQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 219 sDvVil~lPlT~~--T~~lI~~~~L~~MK~gAiLINvgR 255 (620)
+|+|++++|.... +...++ +..+++|+++++++.
T Consensus 187 aDiVi~atp~~~~~~~~~~i~---~~~l~~g~~viDv~~ 222 (275)
T 2hk9_A 187 VQVIVNTTSVGLKDEDPEIFN---YDLIKKDHVVVDIIY 222 (275)
T ss_dssp CSEEEECSSTTSSTTCCCSSC---GGGCCTTSEEEESSS
T ss_pred CCEEEEeCCCCCCCCCCCCCC---HHHcCCCCEEEEcCC
Confidence 9999999997642 223443 466899999999988
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=2.2e-08 Score=106.63 Aligned_cols=107 Identities=16% Similarity=0.199 Sum_probs=81.7
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc-CCceecCCHHhhhc-CCcEEEEcccCChhhHhhc
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP-SAARRMDTLNDLLA-ASDVISLHCAVTDETIQII 236 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~-~g~~~~~sL~eLL~-~sDvVil~lPlT~~T~~lI 236 (620)
+|.|++|+|+|+|+||+.+|+.|.++|++|+++|++......... .+... .+.++++. +||+++.|. +.++|
T Consensus 170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~-v~~~~ll~~~~DIvip~a-----~~~~I 243 (364)
T 1leh_A 170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADA-VAPNAIYGVTCDIFAPCA-----LGAVL 243 (364)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEE-CCGGGTTTCCCSEEEECS-----CSCCB
T ss_pred CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEE-EChHHHhccCCcEeeccc-----hHHHh
Confidence 489999999999999999999999999999999987633221111 13333 36677776 899999774 56688
Q ss_pred CHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCc
Q 007040 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTL 273 (620)
Q Consensus 237 ~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I 273 (620)
+.+.++.|+ ..++++.+++++.+++ +.+.|+++.+
T Consensus 244 ~~~~~~~lg-~~iV~e~An~p~t~~e-a~~~L~~~Gi 278 (364)
T 1leh_A 244 NDFTIPQLK-AKVIAGSADNQLKDPR-HGKYLHELGI 278 (364)
T ss_dssp STTHHHHCC-CSEECCSCSCCBSSHH-HHHHHHHHTC
T ss_pred CHHHHHhCC-CcEEEeCCCCCcccHH-HHHHHHhCCC
Confidence 888888884 6799999999988755 4566666655
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=2e-07 Score=95.47 Aligned_cols=131 Identities=9% Similarity=0.002 Sum_probs=85.3
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-----------ccC------------------CceecCCHH
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT-----------FPS------------------AARRMDTLN 213 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~-----------~~~------------------g~~~~~sL~ 213 (620)
++|+|||+|.||..||..|...|++|++||++....+.. ... .+....++.
T Consensus 16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA 95 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCHH
Confidence 579999999999999999999999999999986432210 000 123356788
Q ss_pred hhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccC
Q 007040 214 DLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVRE 293 (620)
Q Consensus 214 eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~ 293 (620)
+.++.||+|++++|...+...-+-.+....++++++|+....+- ....+.+.+.. .-..+++..+. |.. .
T Consensus 96 ~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i--~~~~l~~~~~~-~~~~~g~h~~~-P~~------~ 165 (302)
T 1f0y_A 96 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSL--QITSIANATTR-QDRFAGLHFFN-PVP------V 165 (302)
T ss_dssp HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSS--CHHHHHTTSSC-GGGEEEEEECS-STT------T
T ss_pred HhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCC--CHHHHHHhcCC-cccEEEEecCC-Ccc------c
Confidence 88999999999999876654444345556789999998554443 23345444432 11223444443 322 3
Q ss_pred CCcEEEcCCC
Q 007040 294 MPNVLILPRS 303 (620)
Q Consensus 294 ~pNVIlTPHi 303 (620)
.+.+.+.++-
T Consensus 166 ~~~~~i~~g~ 175 (302)
T 1f0y_A 166 MKLVEVIKTP 175 (302)
T ss_dssp CCEEEEECCT
T ss_pred CceEEEeCCC
Confidence 4566666643
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.55 E-value=3.7e-08 Score=89.97 Aligned_cols=89 Identities=16% Similarity=0.234 Sum_probs=69.3
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc---cccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV---TFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~---~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
|++|+|||.|.||+.+++.|..+|++|+++|++...... .+........++.+++..+|+|++++|.. ..++..
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~---~~~~~~ 97 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSK---TPIVEE 97 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCS---SCSBCG
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCC---CcEeeH
Confidence 889999999999999999999999999999998644321 11111234568999999999999999976 234554
Q ss_pred HHhhccCCCcEEEEcCCC
Q 007040 239 ECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 239 ~~L~~MK~gAiLINvgRG 256 (620)
..+++|.++||++..
T Consensus 98 ---~~l~~g~~vid~~~p 112 (144)
T 3oj0_A 98 ---RSLMPGKLFIDLGNP 112 (144)
T ss_dssp ---GGCCTTCEEEECCSS
T ss_pred ---HHcCCCCEEEEccCC
Confidence 557889999998764
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.7e-07 Score=99.03 Aligned_cols=240 Identities=13% Similarity=0.110 Sum_probs=136.4
Q ss_pred cceEEEEecCCCCCHHHHhcCCCCeEEEEecccCCccchHHHHhcCcEEEEc---CCCC-----hHHHHHHHH--HHHHH
Q 007040 59 AAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHV---DTSR-----AEEIADTVM--ALLLG 128 (620)
Q Consensus 59 ~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNt---pg~~-----a~aVAE~aL--aLiLa 128 (620)
++|+|+... .+...+.....+.+.++.......+.-.++.+.+.||...|. |.-. -.++++.+- +.+++
T Consensus 66 ~ad~i~~vk-sP~~~~~~~~~~g~~~~~y~~~~~~~~l~~~l~~~gi~~~~~etvp~k~~~~~~l~~~s~~Ag~~a~~~g 144 (361)
T 1pjc_A 66 SREMVVKVK-EPLPAEYDLMQKDQLLFTYLHLAAARELTEQLMRVGLTAIAYETVELPNRSLPLLTPMSIIAGRLSVQFG 144 (361)
T ss_dssp TSSEEECSS-CCCGGGGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEC-CCCHHHHHhhcCCCEEEEEeccccCHHHHHHHHHcCCeEEEEeeeEcccCCccccCcchHHHHHHHHHHH
Confidence 677766432 233333323334555555544444444466678889988874 4221 245555444 44444
Q ss_pred HHhccHHHHHHHHHhCC-CCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCce
Q 007040 129 LLRRTHLLARHALSASG-WLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR 207 (620)
Q Consensus 129 l~Rrl~~~~~~~~~~g~-W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~ 207 (620)
... +... ..+. +. . .+...+.+++|+|+|.|.+|+.+++.|+.+|++|+++|++....+.....+..
T Consensus 145 A~n-t~~~-----~~g~G~~--l----~~l~~l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~ 212 (361)
T 1pjc_A 145 ARF-LERQ-----QGGRGVL--L----GGVPGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS 212 (361)
T ss_dssp HHH-TSGG-----GTSCCCC--T----TCBTTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG
T ss_pred HHH-Hhhc-----cCCCcee--c----cCCCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCc
Confidence 432 1110 1111 11 0 11124678999999999999999999999999999999986433211111110
Q ss_pred -------ecCCHHhhhcCCcEEEEcccCCh-hhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEee
Q 007040 208 -------RMDTLNDLLAASDVISLHCAVTD-ETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD 279 (620)
Q Consensus 208 -------~~~sL~eLL~~sDvVil~lPlT~-~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLD 279 (620)
...++.+.+..+|+|+.+++... .+..++..+.++.|++|.++||++-.. .|.+ +
T Consensus 213 ~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~~~~------------gg~~-----e 275 (361)
T 1pjc_A 213 RVELLYSNSAEIETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAVDQ------------GGCV-----E 275 (361)
T ss_dssp GSEEEECCHHHHHHHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTCTT------------CCSB-----T
T ss_pred eeEeeeCCHHHHHHHHcCCCEEEECCCcCCCCCCeecCHHHHhhCCCCCEEEEEecCC------------CCCC-----c
Confidence 11246677789999999997543 234556788899999999999997521 0111 1
Q ss_pred cCCCCCCCCccccCCCcEE--EcCCCCCCcHH-HHHHHHHHHHHHHHHHHHcC
Q 007040 280 GAEGPQWMEAWVREMPNVL--ILPRSADYSEE-VWMEIRDKAISVLQTFFFDG 329 (620)
Q Consensus 280 V~E~P~~~~spL~~~pNVI--lTPHiAg~T~e-a~~~~~~~a~enL~~~L~~G 329 (620)
.. .|...+.+.+...++. ..+++.+.... +...+.+..+..+..++..|
T Consensus 276 ~~-~~~~~~~~~~~~~~v~~~~~~~lp~~~~~~~s~~~~~~~~~~l~~l~~~G 327 (361)
T 1pjc_A 276 TL-HPTSHTQPTYEVFGVVHYGVPNMPGAVPWTATQALNNSTLPYVVKLANQG 327 (361)
T ss_dssp TC-CCCCSSSCEEEETTEEEECCSCGGGGCHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred cc-cCCCCCCCEEEECCEEEEEeCCcchhhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 11 1222233334344544 34555555433 33444455666677766555
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=7.3e-08 Score=100.01 Aligned_cols=107 Identities=14% Similarity=0.095 Sum_probs=79.3
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCC----CEEEEECCCCC--CCCccccCCceecCCHHhhhcCCcEEEEcccCChhhH
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFK----MSVLYFDVPEG--KGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI 233 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG----~~V~~~dr~~~--~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~ 233 (620)
...++|||||+|.||..+|..|...| ++|++||++.. ........|+....+..+++..+|+|++++| ...+.
T Consensus 20 ~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~-~~~~~ 98 (322)
T 2izz_A 20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVK-PHIIP 98 (322)
T ss_dssp --CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSC-GGGHH
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeC-HHHHH
Confidence 34568999999999999999999989 79999999874 2222222355556688899999999999999 45566
Q ss_pred hhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 234 QIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
.++. +....++++.++|+++-|-- ...|.+.+..
T Consensus 99 ~vl~-~l~~~l~~~~ivvs~s~gi~--~~~l~~~l~~ 132 (322)
T 2izz_A 99 FILD-EIGADIEDRHIVVSCAAGVT--ISSIEKKLSA 132 (322)
T ss_dssp HHHH-HHGGGCCTTCEEEECCTTCC--HHHHHHHHHT
T ss_pred HHHH-HHHhhcCCCCEEEEeCCCCC--HHHHHHHHhh
Confidence 6653 45567889999999976532 3456666654
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=98.50 E-value=7e-08 Score=96.11 Aligned_cols=100 Identities=12% Similarity=0.067 Sum_probs=74.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc-CCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP-SAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECL 241 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~-~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L 241 (620)
++|||||+|.||+.+|+.|...|+.|.+||+++........ .++....++++++..+|+|++++| ...... .+
T Consensus 4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~-~~~~~~-----v~ 77 (259)
T 2ahr_A 4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLFET-----VL 77 (259)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGHHH-----HH
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeC-cHhHHH-----HH
Confidence 47999999999999999999999999999998643321111 144455689999999999999999 444433 34
Q ss_pred hccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 242 QHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 242 ~~MK~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
..+++|.++|++..|-- .+.+.+.+..
T Consensus 78 ~~l~~~~~vv~~~~~~~--~~~l~~~~~~ 104 (259)
T 2ahr_A 78 KPLHFKQPIISMAAGIS--LQRLATFVGQ 104 (259)
T ss_dssp TTSCCCSCEEECCTTCC--HHHHHHHHCT
T ss_pred HHhccCCEEEEeCCCCC--HHHHHHhcCC
Confidence 45668999999976543 3456666553
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=2.1e-07 Score=101.26 Aligned_cols=112 Identities=14% Similarity=0.115 Sum_probs=82.7
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc------------------cCCceecCCHHhhhcCC
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF------------------PSAARRMDTLNDLLAAS 219 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~------------------~~g~~~~~sL~eLL~~s 219 (620)
++..-++|+|||+|.||..+|..|.. |++|++||+++...+... ..+.....++.++++.|
T Consensus 32 r~~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~~a 110 (432)
T 3pid_A 32 RGSEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYRNA 110 (432)
T ss_dssp ---CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHTTC
T ss_pred cccCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHhCC
Confidence 44566799999999999999999988 999999999864322100 01234556888999999
Q ss_pred cEEEEcccCChh-------hHhhc--CHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcC
Q 007040 220 DVISLHCAVTDE-------TIQII--NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDG 271 (620)
Q Consensus 220 DvVil~lPlT~~-------T~~lI--~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G 271 (620)
|+|++++|...+ +..+. -..... |++|+++|+.+...+-..+.+.+.+...
T Consensus 111 DvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~ 170 (432)
T 3pid_A 111 DYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGID 170 (432)
T ss_dssp SEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCC
T ss_pred CEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhc
Confidence 999999996521 11222 134556 9999999999998888888888888764
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=6.5e-08 Score=96.28 Aligned_cols=100 Identities=14% Similarity=0.144 Sum_probs=72.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC-CEEEEECCCCCCCCcccc-CCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHH
Q 007040 163 LVLGIVGRSASARALATRSLSFK-MSVLYFDVPEGKGKVTFP-SAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG-~~V~~~dr~~~~~~~~~~-~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~ 240 (620)
++|||||+|.||..+|..|...| ++|++||+++........ .+.....++.+++ .+|+|++++| ......++..
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~-~~~~~~v~~~-- 76 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVK-PQDMEAACKN-- 76 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSC-HHHHHHHHTT--
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeC-chhHHHHHHH--
Confidence 47999999999999999999889 999999998643332111 2455556777888 9999999999 5555555431
Q ss_pred hhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 241 L~~MK~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
+.. + +.++|+++.|--. +.|.+.+..
T Consensus 77 l~~-~-~~ivv~~~~g~~~--~~l~~~~~~ 102 (263)
T 1yqg_A 77 IRT-N-GALVLSVAAGLSV--GTLSRYLGG 102 (263)
T ss_dssp CCC-T-TCEEEECCTTCCH--HHHHHHTTS
T ss_pred hcc-C-CCEEEEecCCCCH--HHHHHHcCC
Confidence 222 4 8999999655332 566666655
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=98.46 E-value=7.7e-08 Score=95.70 Aligned_cols=104 Identities=14% Similarity=0.152 Sum_probs=76.4
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC----EEEEECCCCCCCCccc-cCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 163 LVLGIVGRSASARALATRSLSFKM----SVLYFDVPEGKGKVTF-PSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~----~V~~~dr~~~~~~~~~-~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++|||||+|.||..+|+.|...|+ +|++||+++....... ..++....++.+++.++|+|++++|.. ....++
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~~~-~~~~v~- 80 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIKPD-LYASII- 80 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSCTT-THHHHC-
T ss_pred CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeCHH-HHHHHH-
Confidence 579999999999999999999998 9999999875433221 135566678999999999999999743 445555
Q ss_pred HHHhhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
.+....++++.++|.+.-|- ..+.|.+.+..
T Consensus 81 ~~l~~~l~~~~~vvs~~~gi--~~~~l~~~~~~ 111 (247)
T 3gt0_A 81 NEIKEIIKNDAIIVTIAAGK--SIESTENAFNK 111 (247)
T ss_dssp ---CCSSCTTCEEEECSCCS--CHHHHHHHHCS
T ss_pred HHHHhhcCCCCEEEEecCCC--CHHHHHHHhCC
Confidence 34556788999999776553 34456565543
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=98.44 E-value=7e-07 Score=97.44 Aligned_cols=107 Identities=9% Similarity=0.132 Sum_probs=81.3
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc--------------------CCceecCCHHhhhcCCcEE
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP--------------------SAARRMDTLNDLLAASDVI 222 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~--------------------~g~~~~~sL~eLL~~sDvV 222 (620)
-+|+|||+|.||..+|..|...|++|++||+++...+.... .......++.+.++.||+|
T Consensus 9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDvv 88 (446)
T 4a7p_A 9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADAV 88 (446)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSEE
T ss_pred eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCEE
Confidence 35999999999999999999999999999998754331111 1134457898999999999
Q ss_pred EEcccCChh----------hHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 223 SLHCAVTDE----------TIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 223 il~lPlT~~----------T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
++|+|.... .+..+ ......|++|+++|+.+.-.+-..+.+.+.+.+
T Consensus 89 ii~Vptp~~~~~~~~Dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e 145 (446)
T 4a7p_A 89 FIAVGTPSRRGDGHADLSYVFAAA-REIAENLTKPSVIVTKSTVPVGTGDEVERIIAE 145 (446)
T ss_dssp EECCCCCBCTTTCCBCTHHHHHHH-HHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHH
T ss_pred EEEcCCCCccccCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHH
Confidence 999886532 33333 456778999999999997666566667776665
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.1e-07 Score=94.94 Aligned_cols=105 Identities=9% Similarity=0.029 Sum_probs=78.9
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCC---EEEEECCCCCCCCcccc-CCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 162 GLVLGIVGRSASARALATRSLSFKM---SVLYFDVPEGKGKVTFP-SAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~---~V~~~dr~~~~~~~~~~-~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
.++|||||+|+||..+|..|...|+ +|++||++......... .++....++.+++..+|+|++++|. .....++.
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~p-~~~~~vl~ 81 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVKP-HQIKMVCE 81 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSCG-GGHHHHHH
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeCH-HHHHHHHH
Confidence 4689999999999999999999998 89999998754432222 2566667889999999999999984 34445553
Q ss_pred HHHhhc-cCCCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 238 AECLQH-IKPGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 238 ~~~L~~-MK~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
+.-.. ++++.++|++.-|- ....|.+.+..
T Consensus 82 -~l~~~~l~~~~iiiS~~agi--~~~~l~~~l~~ 112 (280)
T 3tri_A 82 -ELKDILSETKILVISLAVGV--TTPLIEKWLGK 112 (280)
T ss_dssp -HHHHHHHTTTCEEEECCTTC--CHHHHHHHHTC
T ss_pred -HHHhhccCCCeEEEEecCCC--CHHHHHHHcCC
Confidence 34444 78888999887664 34567677654
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=5e-07 Score=96.93 Aligned_cols=132 Identities=9% Similarity=0.012 Sum_probs=87.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccC------------------CceecCCHHhhhcCCcEEEE
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPS------------------AARRMDTLNDLLAASDVISL 224 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~------------------g~~~~~sL~eLL~~sDvVil 224 (620)
++|+|||+|.||..+|..|.. |++|++||++.......... ......++.+.+..||+|++
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvvii 79 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII 79 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEE
Confidence 479999999999999999999 99999999976332211101 11334567788889999999
Q ss_pred cccCCh----------hhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCC--CCCCCCcccc
Q 007040 225 HCAVTD----------ETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE--GPQWMEAWVR 292 (620)
Q Consensus 225 ~lPlT~----------~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E--~P~~~~spL~ 292 (620)
++|... .+...+ ..... +++++++|+.+.-.+-..+.+.+.+.... .++..+ .|-.....+.
T Consensus 80 avpt~~~~~~~~~dl~~v~~v~-~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~~----v~~~Pe~~~~G~a~~~~~ 153 (402)
T 1dlj_A 80 ATPTNYNSRINYFDTQHVETVI-KEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTDR----IIFSPEFLRESKALYDNL 153 (402)
T ss_dssp CCCCCEETTTTEECCHHHHHHH-HHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCSC----EEECCCCCCTTSTTHHHH
T ss_pred ecCCCcccCCCCccHHHHHHHH-HHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCCe----EEECCccccCcchhhccc
Confidence 999763 244444 33455 89999999977766666677777665432 222222 1322333445
Q ss_pred CCCcEEEcC
Q 007040 293 EMPNVLILP 301 (620)
Q Consensus 293 ~~pNVIlTP 301 (620)
..+.+++-.
T Consensus 154 ~~~riviG~ 162 (402)
T 1dlj_A 154 YPSRIIVSC 162 (402)
T ss_dssp SCSCEEEEC
T ss_pred CCCEEEEeC
Confidence 556676543
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.40 E-value=4.8e-07 Score=98.70 Aligned_cols=107 Identities=11% Similarity=0.108 Sum_probs=79.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-------c-------------cCCceecCCHHhhhcCCcEE
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT-------F-------------PSAARRMDTLNDLLAASDVI 222 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~-------~-------------~~g~~~~~sL~eLL~~sDvV 222 (620)
++|+|||+|.||..+|..|...|++|++||++....... + ........++.++++.||+|
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDvV 82 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADII 82 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCEE
Confidence 589999999999999999999999999999986322100 0 11234456889999999999
Q ss_pred EEcccCCh---------hhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 223 SLHCAVTD---------ETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 223 il~lPlT~---------~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
++++|... .....+ ......+++|.++|+.+.-.+-..+.+.+.+.+
T Consensus 83 iiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~ 138 (450)
T 3gg2_A 83 FIAVGTPAGEDGSADMSYVLDAA-RSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQE 138 (450)
T ss_dssp EECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred EEEcCCCcccCCCcChHHHHHHH-HHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHH
Confidence 99999653 333443 456677999999999997555555566666654
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.39 E-value=7.7e-07 Score=97.72 Aligned_cols=107 Identities=10% Similarity=0.017 Sum_probs=77.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhC--CCEEEEECCCCCCCCccc-------c------------CCceecCCHHhhhcCCcE
Q 007040 163 LVLGIVGRSASARALATRSLSF--KMSVLYFDVPEGKGKVTF-------P------------SAARRMDTLNDLLAASDV 221 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf--G~~V~~~dr~~~~~~~~~-------~------------~g~~~~~sL~eLL~~sDv 221 (620)
++|+|||+|.||..+|..|... |++|++||++....+... . .+.....++.+.++.||+
T Consensus 10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aDv 89 (481)
T 2o3j_A 10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADL 89 (481)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCCE
Confidence 5899999999999999999876 799999998753221100 0 122344567788899999
Q ss_pred EEEcccCChh--------------hHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 222 ISLHCAVTDE--------------TIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 222 Vil~lPlT~~--------------T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
|++++|.... +...+ ......+++|+++|+.+.-.+-..+.+.+.|.+
T Consensus 90 vii~Vptp~~~~g~~~~~~~dl~~v~~~~-~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~ 151 (481)
T 2o3j_A 90 IFISVNTPTKMYGRGKGMAPDLKYVESVS-RTIAQYAGGPKIVVEKSTVPVKAAESIGCILRE 151 (481)
T ss_dssp EEECCCCCBCCSSTTTTTSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred EEEecCCccccccccccCCCcHHHHHHHH-HHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHH
Confidence 9999986432 22222 345677999999999887666556667777776
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.39 E-value=4.9e-07 Score=99.58 Aligned_cols=129 Identities=16% Similarity=0.161 Sum_probs=88.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-----------cCC-------------ceecCCHHhhhcC
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF-----------PSA-------------ARRMDTLNDLLAA 218 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~-----------~~g-------------~~~~~sL~eLL~~ 218 (620)
++|||||+|.||..||..+...|++|++||++........ ..+ +....+++ .+++
T Consensus 6 ~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 84 (483)
T 3mog_A 6 QTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-ALAA 84 (483)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-GGGG
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-HhcC
Confidence 5799999999999999999999999999999874332110 111 22345675 6889
Q ss_pred CcEEEEcccCChhhHhhcCHHHhhccCCCcEE-EEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcE
Q 007040 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFL-VNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNV 297 (620)
Q Consensus 219 sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiL-INvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNV 297 (620)
||+||.++|...+.+.-+-.+....++++++| .|++.-.+ ..|.+.+.. ....+++..|.+++. ++-+
T Consensus 85 aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i---~~ia~~~~~-p~~~ig~hf~~Pa~v-------~~Lv 153 (483)
T 3mog_A 85 ADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISI---TAIAAEIKN-PERVAGLHFFNPAPV-------MKLV 153 (483)
T ss_dssp CSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCH---HHHTTTSSS-GGGEEEEEECSSTTT-------CCEE
T ss_pred CCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCH---HHHHHHccC-ccceEEeeecChhhh-------CCeE
Confidence 99999999988776654445677789999999 46776543 345544432 334456666654322 2456
Q ss_pred EEcCCC
Q 007040 298 LILPRS 303 (620)
Q Consensus 298 IlTPHi 303 (620)
.+.|+-
T Consensus 154 evv~g~ 159 (483)
T 3mog_A 154 EVVSGL 159 (483)
T ss_dssp EEEECS
T ss_pred EEecCC
Confidence 666643
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.38 E-value=4.3e-07 Score=90.30 Aligned_cols=98 Identities=15% Similarity=0.244 Sum_probs=70.5
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCC----CEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 162 GLVLGIVGRSASARALATRSLSFK----MSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG----~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
.++|||||+|.||..+|..|...| ++|++||++... .++....++.+++..+|+|++++|. ..+..++.
T Consensus 4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~------~g~~~~~~~~~~~~~~D~vi~~v~~-~~~~~v~~ 76 (262)
T 2rcy_A 4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN------TTLNYMSSNEELARHCDIIVCAVKP-DIAGSVLN 76 (262)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS------SSSEECSCHHHHHHHCSEEEECSCT-TTHHHHHH
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc------CceEEeCCHHHHHhcCCEEEEEeCH-HHHHHHHH
Confidence 468999999999999999999888 799999998754 3455566888999999999999994 45555553
Q ss_pred HHHhhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
+....++ +.++|....| ++.+.+.+.+..
T Consensus 77 -~l~~~l~-~~~vv~~~~g--i~~~~l~~~~~~ 105 (262)
T 2rcy_A 77 -NIKPYLS-SKLLISICGG--LNIGKLEEMVGS 105 (262)
T ss_dssp -HSGGGCT-TCEEEECCSS--CCHHHHHHHHCT
T ss_pred -HHHHhcC-CCEEEEECCC--CCHHHHHHHhCC
Confidence 3445564 4555554443 233456565544
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.2e-07 Score=96.38 Aligned_cols=92 Identities=22% Similarity=0.257 Sum_probs=71.2
Q ss_pred cCcEEEEEeCChhhHHHHHHHhh-CCC-EEEEECCCCCCCCcccc-CC--ceecCCHHhhhcCCcEEEEcccCChhhHhh
Q 007040 161 RGLVLGIVGRSASARALATRSLS-FKM-SVLYFDVPEGKGKVTFP-SA--ARRMDTLNDLLAASDVISLHCAVTDETIQI 235 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lka-fG~-~V~~~dr~~~~~~~~~~-~g--~~~~~sL~eLL~~sDvVil~lPlT~~T~~l 235 (620)
..++|||||+|.||+.+++.|.. +|+ +|.+||++......... .+ +....+++++++.+|+|++++|.. ..+
T Consensus 134 ~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~~---~~v 210 (312)
T 2i99_A 134 SSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLAT---EPI 210 (312)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCCS---SCC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCCC---Ccc
Confidence 56789999999999999999875 487 99999998644331111 12 445678999999999999999953 456
Q ss_pred cCHHHhhccCCCcEEEEcCCChh
Q 007040 236 INAECLQHIKPGAFLVNTGSSQL 258 (620)
Q Consensus 236 I~~~~L~~MK~gAiLINvgRG~v 258 (620)
+.. ..+++|.++++++....
T Consensus 211 ~~~---~~l~~g~~vi~~g~~~p 230 (312)
T 2i99_A 211 LFG---EWVKPGAHINAVGASRP 230 (312)
T ss_dssp BCG---GGSCTTCEEEECCCCST
T ss_pred cCH---HHcCCCcEEEeCCCCCC
Confidence 654 57899999999986654
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.6e-06 Score=94.85 Aligned_cols=133 Identities=16% Similarity=0.097 Sum_probs=85.9
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc----------------------CCceecCCHHhhhcCC
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP----------------------SAARRMDTLNDLLAAS 219 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~----------------------~g~~~~~sL~eLL~~s 219 (620)
-++|||||+|.||..||..|...|++|++||++......... .......++ +.+++|
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~a 115 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTV 115 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTTC
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCCC
Confidence 357999999999999999999999999999997632221000 001123466 567899
Q ss_pred cEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEEE
Q 007040 220 DVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLI 299 (620)
Q Consensus 220 DvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVIl 299 (620)
|+|+.++|...+.+.-+-.+....++++++|+....+- ....|.+.+.. .-..+++..| .|.+ .++.|.+
T Consensus 116 DlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~--~~~~la~~~~~-~~~~ig~hf~-~P~~------~~~lvev 185 (463)
T 1zcj_A 116 DLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSAL--NVDDIASSTDR-PQLVIGTHFF-SPAH------VMRLLEV 185 (463)
T ss_dssp SEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSS--CHHHHHTTSSC-GGGEEEEEEC-SSTT------TCCEEEE
T ss_pred CEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCc--CHHHHHHHhcC-CcceEEeecC-CCcc------cceeEEE
Confidence 99999999876544444345666789999999744332 23356655532 2223455555 3432 3455666
Q ss_pred cCCCCC
Q 007040 300 LPRSAD 305 (620)
Q Consensus 300 TPHiAg 305 (620)
.++..+
T Consensus 186 v~g~~t 191 (463)
T 1zcj_A 186 IPSRYS 191 (463)
T ss_dssp EECSSC
T ss_pred eCCCCC
Confidence 665443
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.4e-06 Score=95.89 Aligned_cols=104 Identities=13% Similarity=0.069 Sum_probs=76.1
Q ss_pred CcEEEEEeCChhhHHHHHHHhhC-CC-EEEEECCCCC----CCCcc---------cc------------CC-ceecCCHH
Q 007040 162 GLVLGIVGRSASARALATRSLSF-KM-SVLYFDVPEG----KGKVT---------FP------------SA-ARRMDTLN 213 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lkaf-G~-~V~~~dr~~~----~~~~~---------~~------------~g-~~~~~sL~ 213 (620)
-++|+|||+|.||..+|..|... |+ +|++||++.. ..+.. +. .+ .....+ .
T Consensus 18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd-~ 96 (478)
T 3g79_A 18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPD-F 96 (478)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESC-G
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCc-H
Confidence 35899999999999999999999 99 9999999876 21100 00 12 223344 5
Q ss_pred hhhcCCcEEEEcccCC--------hhhHhhc--CHHHhhccCCCcEEEEcCCChhhcHHHHHH
Q 007040 214 DLLAASDVISLHCAVT--------DETIQII--NAECLQHIKPGAFLVNTGSSQLLDDCAVKQ 266 (620)
Q Consensus 214 eLL~~sDvVil~lPlT--------~~T~~lI--~~~~L~~MK~gAiLINvgRG~vVDe~AL~~ 266 (620)
+.++.||+|++++|.. +++..+. -......+++|+++|+.+.-.+-..+.+.+
T Consensus 97 ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~ 159 (478)
T 3g79_A 97 SRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAK 159 (478)
T ss_dssp GGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHH
T ss_pred HHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHH
Confidence 7889999999999975 2333333 245677899999999999877666666655
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.30 E-value=8.3e-07 Score=91.79 Aligned_cols=105 Identities=16% Similarity=0.152 Sum_probs=74.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccC-C-------------c-eecCCHHhhhcCCcEEEEccc
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPS-A-------------A-RRMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~-g-------------~-~~~~sL~eLL~~sDvVil~lP 227 (620)
++|+|||+|.||..+|..|...|++|.+||+++......... + . ....++++++..+|+|++++|
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~ 84 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVP 84 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeCC
Confidence 689999999999999999999999999999975332211000 0 0 234678888899999999999
Q ss_pred CChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 228 VTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 228 lT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
... +..++ ......+++++++|++ -|.......+.+.+..
T Consensus 85 ~~~-~~~~~-~~l~~~l~~~~~vv~~-~~~~~~~~~~~~~l~~ 124 (359)
T 1bg6_A 85 AIH-HASIA-ANIASYISEGQLIILN-PGATGGALEFRKILRE 124 (359)
T ss_dssp GGG-HHHHH-HHHGGGCCTTCEEEES-SCCSSHHHHHHHHHHH
T ss_pred chH-HHHHH-HHHHHhCCCCCEEEEc-CCCchHHHHHHHHHHh
Confidence 664 34555 4556678999999998 3312233335555554
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.29 E-value=5.6e-07 Score=92.36 Aligned_cols=105 Identities=12% Similarity=0.087 Sum_probs=73.3
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECC--CCCCCCccccCC-----------ceecC--CHHhhhcCCcEEEEccc
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDV--PEGKGKVTFPSA-----------ARRMD--TLNDLLAASDVISLHCA 227 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr--~~~~~~~~~~~g-----------~~~~~--sL~eLL~~sDvVil~lP 227 (620)
++|+|||+|.||..+|..|...|++|++|++ +..........+ ..... ++.+++..+|+|++++|
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~ 80 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS 80 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCC
Confidence 4799999999999999999999999999999 643221111111 12333 67788899999999999
Q ss_pred CChhhHhhcCHHHhhccCCCcEEEEcCCCh---h-hcHHHHHHHHHc
Q 007040 228 VTDETIQIINAECLQHIKPGAFLVNTGSSQ---L-LDDCAVKQLLID 270 (620)
Q Consensus 228 lT~~T~~lI~~~~L~~MK~gAiLINvgRG~---v-VDe~AL~~AL~~ 270 (620)
.. .+..++. .... +++++++|+++.|- - -..+.+.+.+.+
T Consensus 81 ~~-~~~~v~~-~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~ 124 (335)
T 1txg_A 81 TD-GVLPVMS-RILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRL 124 (335)
T ss_dssp GG-GHHHHHH-HHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTT
T ss_pred hH-HHHHHHH-HHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHH
Confidence 65 4555553 4455 88999999998764 1 122345555544
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=98.29 E-value=1.7e-06 Score=79.91 Aligned_cols=103 Identities=14% Similarity=0.181 Sum_probs=79.6
Q ss_pred ecCcEEEEEeC----ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhh
Q 007040 160 CRGLVLGIVGR----SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQI 235 (620)
Q Consensus 160 L~GktVGIIGl----G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~l 235 (620)
..-++|+|||+ |.+|..+++.|...|++|+.+|+.... . .|...+.++.++....|++++++| .+....+
T Consensus 12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~----i-~G~~~~~s~~el~~~vDlvii~vp-~~~v~~v 85 (138)
T 1y81_A 12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDE----I-EGLKCYRSVRELPKDVDVIVFVVP-PKVGLQV 85 (138)
T ss_dssp --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE----E-TTEECBSSGGGSCTTCCEEEECSC-HHHHHHH
T ss_pred cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCe----E-CCeeecCCHHHhCCCCCEEEEEeC-HHHHHHH
Confidence 46678999999 999999999999999999999887522 1 466667899999999999999999 5666677
Q ss_pred cCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 236 INAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 236 I~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
+. +.++ +..++++++++. ..+++.+++++..+.
T Consensus 86 ~~-~~~~-~g~~~i~~~~~~----~~~~l~~~a~~~Gi~ 118 (138)
T 1y81_A 86 AK-EAVE-AGFKKLWFQPGA----ESEEIRRFLEKAGVE 118 (138)
T ss_dssp HH-HHHH-TTCCEEEECTTS----CCHHHHHHHHHHTCE
T ss_pred HH-HHHH-cCCCEEEEcCcc----HHHHHHHHHHHCCCE
Confidence 64 3444 666788887754 257788887776665
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.2e-06 Score=96.18 Aligned_cols=107 Identities=12% Similarity=0.117 Sum_probs=76.0
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc-------cccCC-------------ceecCCHHhhhcCCcE
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV-------TFPSA-------------ARRMDTLNDLLAASDV 221 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~-------~~~~g-------------~~~~~sL~eLL~~sDv 221 (620)
.++|+|||+|.||..+|..|...|++|++||++....+. .+..+ .....++.+.++.||+
T Consensus 8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aDv 87 (478)
T 2y0c_A 8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGDV 87 (478)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCSE
T ss_pred CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCCE
Confidence 468999999999999999999999999999997532210 01111 2345678788899999
Q ss_pred EEEcccCC---------hhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHH
Q 007040 222 ISLHCAVT---------DETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269 (620)
Q Consensus 222 Vil~lPlT---------~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~ 269 (620)
|++++|.. ......+ ......+++++++|+.+...+-..+.+.+.+.
T Consensus 88 viiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~ 143 (478)
T 2y0c_A 88 QFIAVGTPPDEDGSADLQYVLAAA-RNIGRYMTGFKVIVDKSTVPVGTAERVRAAVA 143 (478)
T ss_dssp EEECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHH
T ss_pred EEEEeCCCcccCCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCcCCCchHHHHHHHH
Confidence 99999963 3344444 34566799999999998543433444544444
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=1.5e-06 Score=86.97 Aligned_cols=91 Identities=10% Similarity=-0.002 Sum_probs=67.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccC---Cc-----eecCCHHhhhcCCcEEEEcccCChhhHh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPS---AA-----RRMDTLNDLLAASDVISLHCAVTDETIQ 234 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~---g~-----~~~~sL~eLL~~sDvVil~lPlT~~T~~ 234 (620)
++|+|||+|.||..+|..|...|++|++|+++.......... +. ....+ .+.+..+|+|++++|.. .+..
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~d~vi~~v~~~-~~~~ 78 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTAND-PDFLATSDLLLVTLKAW-QVSD 78 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESC-HHHHHTCSEEEECSCGG-GHHH
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecC-ccccCCCCEEEEEecHH-hHHH
Confidence 479999999999999999999999999999987543311111 11 11233 46778999999999965 4555
Q ss_pred hcCHHHhhccCCCcEEEEcCCC
Q 007040 235 IINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 235 lI~~~~L~~MK~gAiLINvgRG 256 (620)
++ ......+++++++|++.-|
T Consensus 79 v~-~~l~~~l~~~~~vv~~~~g 99 (291)
T 1ks9_A 79 AV-KSLASTLPVTTPILLIHNG 99 (291)
T ss_dssp HH-HHHHTTSCTTSCEEEECSS
T ss_pred HH-HHHHhhCCCCCEEEEecCC
Confidence 55 3455678899999998665
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=1.5e-06 Score=99.90 Aligned_cols=139 Identities=16% Similarity=0.102 Sum_probs=89.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-----------ccCC-------------ceecCCHHhhhcC
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT-----------FPSA-------------ARRMDTLNDLLAA 218 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~-----------~~~g-------------~~~~~sL~eLL~~ 218 (620)
++|||||+|.||..||..+...|++|++||++....... ...| +....++ +.+++
T Consensus 315 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~ 393 (715)
T 1wdk_A 315 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFGN 393 (715)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGGG
T ss_pred CEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHHCC
Confidence 579999999999999999999999999999986432210 0111 2234566 67899
Q ss_pred CcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEE
Q 007040 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVL 298 (620)
Q Consensus 219 sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVI 298 (620)
||+||.++|...+.+.-+-.+....++++++|+..+.+- ....+.+.+.. .-..+++..|. |.+ .++.|.
T Consensus 394 aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl--~i~~la~~~~~-~~~~ig~hf~~-P~~------~~~lve 463 (715)
T 1wdk_A 394 VDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTI--SISLLAKALKR-PENFVGMHFFN-PVH------MMPLVE 463 (715)
T ss_dssp CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSS--CHHHHGGGCSC-GGGEEEEECCS-STT------TCCEEE
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCC--CHHHHHHHhcC-ccceEEEEccC-Ccc------cCceEE
Confidence 999999999888766544456667899999998444332 22345544422 22334555554 322 356666
Q ss_pred EcCCCCCCcHHHHHH
Q 007040 299 ILPRSADYSEEVWME 313 (620)
Q Consensus 299 lTPHiAg~T~ea~~~ 313 (620)
+.++-. .++++.+.
T Consensus 464 vv~g~~-t~~e~~~~ 477 (715)
T 1wdk_A 464 VIRGEK-SSDLAVAT 477 (715)
T ss_dssp EEECSS-CCHHHHHH
T ss_pred EEECCC-CCHHHHHH
Confidence 665432 23444333
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.24 E-value=7.7e-07 Score=89.92 Aligned_cols=106 Identities=8% Similarity=-0.000 Sum_probs=71.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCcee------------cCCHHhhhc---CCcEEEEccc
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR------------MDTLNDLLA---ASDVISLHCA 227 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~------------~~sL~eLL~---~sDvVil~lP 227 (620)
++|+|||+|.||..+|..|...|++|++||++..........+... ..+..++.. .+|+|++++|
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~ 83 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALTK 83 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECSC
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEec
Confidence 5799999999999999999999999999999763322111111110 013334444 8999999999
Q ss_pred CChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcC
Q 007040 228 VTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDG 271 (620)
Q Consensus 228 lT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G 271 (620)
. ..+..++ ......+++++++|++..|- -..+.+.+.+...
T Consensus 84 ~-~~~~~v~-~~l~~~l~~~~~iv~~~~g~-~~~~~l~~~~~~~ 124 (316)
T 2ew2_A 84 A-QQLDAMF-KAIQPMITEKTYVLCLLNGL-GHEDVLEKYVPKE 124 (316)
T ss_dssp H-HHHHHHH-HHHGGGCCTTCEEEECCSSS-CTHHHHTTTSCGG
T ss_pred c-ccHHHHH-HHHHHhcCCCCEEEEecCCC-CcHHHHHHHcCCc
Confidence 4 4555555 34556788999999997652 2234455555443
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=1.1e-06 Score=91.16 Aligned_cols=95 Identities=14% Similarity=0.061 Sum_probs=71.3
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCC-------CEEEEECCCCC-----CCCcc--------------ccCCceecCCHHhh
Q 007040 162 GLVLGIVGRSASARALATRSLSFK-------MSVLYFDVPEG-----KGKVT--------------FPSAARRMDTLNDL 215 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG-------~~V~~~dr~~~-----~~~~~--------------~~~g~~~~~sL~eL 215 (620)
.++|+|||+|.||..+|..|...| ++|.+|+++.. ..... ...++....++.++
T Consensus 8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1x0v_A 8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQA 87 (354)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHH
Confidence 468999999999999999999888 89999999875 11100 01123345678888
Q ss_pred hcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChh
Q 007040 216 LAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQL 258 (620)
Q Consensus 216 L~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~v 258 (620)
+..+|+|++++|. ..+..++ ......+++++++|++..|-.
T Consensus 88 ~~~aD~Vilav~~-~~~~~v~-~~i~~~l~~~~ivv~~~~Gi~ 128 (354)
T 1x0v_A 88 AEDADILIFVVPH-QFIGKIC-DQLKGHLKANATGISLIKGVD 128 (354)
T ss_dssp HTTCSEEEECCCG-GGHHHHH-HHHTTCSCTTCEEEECCCCBC
T ss_pred HcCCCEEEEeCCH-HHHHHHH-HHHHhhCCCCCEEEEECCccC
Confidence 9999999999995 4555555 344566889999999988643
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=4.8e-07 Score=87.13 Aligned_cols=112 Identities=13% Similarity=0.108 Sum_probs=77.7
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCccccC-C-------ceecCCHHhhhcCCcEEEEcccCChhhH
Q 007040 163 LVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPS-A-------ARRMDTLNDLLAASDVISLHCAVTDETI 233 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~-g-------~~~~~sL~eLL~~sDvVil~lPlT~~T~ 233 (620)
++|+||| .|.||+.+|+.|...|++|++++++.......... + .. ..++.+++..+|+|++++|. ..+.
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~Vi~~~~~-~~~~ 78 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASIT-GMKNEDAAEACDIAVLTIPW-EHAI 78 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEE-EEEHHHHHHHCSEEEECSCH-HHHH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCC-hhhHHHHHhcCCEEEEeCCh-hhHH
Confidence 4799999 99999999999999999999999875432211100 1 22 35788889999999999993 3445
Q ss_pred hhcCHHHhhccCCCcEEEEcCCChhhc------------HHHHHHHHHcCCcceeEeecCC
Q 007040 234 QIINAECLQHIKPGAFLVNTGSSQLLD------------DCAVKQLLIDGTLAGCALDGAE 282 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgRG~vVD------------e~AL~~AL~~G~I~GAaLDV~E 282 (620)
.++. +....++ ++++|+++.|--.+ .+.+.+.+.. ...++++.
T Consensus 79 ~~~~-~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~----~~~v~~~~ 133 (212)
T 1jay_A 79 DTAR-DLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLES----EKVVSALH 133 (212)
T ss_dssp HHHH-HTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTC----SCEEECCT
T ss_pred HHHH-HHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCC----CeEEEEcc
Confidence 5543 2334454 99999999865432 4566666642 24566654
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.22 E-value=3.7e-06 Score=84.43 Aligned_cols=70 Identities=16% Similarity=0.200 Sum_probs=58.0
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHh
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECL 241 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L 241 (620)
-++|||||+|.||.++|+.|+..|++|++|++. ++ +..|| ++++|.. .+..++ .+..
T Consensus 6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~------------------~~-~~~aD--ilavP~~-ai~~vl-~~l~ 62 (232)
T 3dfu_A 6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP------------------ED-IRDFE--LVVIDAH-GVEGYV-EKLS 62 (232)
T ss_dssp CCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG------------------GG-GGGCS--EEEECSS-CHHHHH-HHHH
T ss_pred CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH------------------HH-hccCC--EEEEcHH-HHHHHH-HHHH
Confidence 468999999999999999999999999999982 22 56799 8899976 566665 4556
Q ss_pred hccCCCcEEEEcC
Q 007040 242 QHIKPGAFLVNTG 254 (620)
Q Consensus 242 ~~MK~gAiLINvg 254 (620)
..+++|+++|+++
T Consensus 63 ~~l~~g~ivvd~s 75 (232)
T 3dfu_A 63 AFARRGQMFLHTS 75 (232)
T ss_dssp TTCCTTCEEEECC
T ss_pred HhcCCCCEEEEEC
Confidence 6789999999974
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=2.7e-07 Score=96.71 Aligned_cols=93 Identities=11% Similarity=0.033 Sum_probs=69.9
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc--------------ccCCceecCCHHhhhcCCcEEEEcccCC
Q 007040 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT--------------FPSAARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~--------------~~~g~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
+|+|||+|.||..+|..|...|++|++||++....+.. ...++....++.+++..+|+|++++|.
T Consensus 17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~~- 95 (366)
T 1evy_A 17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT- 95 (366)
T ss_dssp EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCCH-
T ss_pred eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCCh-
Confidence 89999999999999999999999999999975322110 011234456788889999999999994
Q ss_pred hhhHhhcCHH---HhhccCC-CcEEEEcCCCh
Q 007040 230 DETIQIINAE---CLQHIKP-GAFLVNTGSSQ 257 (620)
Q Consensus 230 ~~T~~lI~~~---~L~~MK~-gAiLINvgRG~ 257 (620)
..+..++... ....+++ ++++|+++.|-
T Consensus 96 ~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi 127 (366)
T 1evy_A 96 QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGI 127 (366)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSC
T ss_pred HHHHHHHHHhHHHHHHhcCccCCEEEEECCcC
Confidence 5555555431 4456778 99999998764
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.21 E-value=3.4e-06 Score=83.43 Aligned_cols=98 Identities=15% Similarity=0.198 Sum_probs=73.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEE-EEECCCCCCCCccccCCceecCCHHhhh-cCCcEEEEcccCChhhHhhcCHHH
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSV-LYFDVPEGKGKVTFPSAARRMDTLNDLL-AASDVISLHCAVTDETIQIINAEC 240 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V-~~~dr~~~~~~~~~~~g~~~~~sL~eLL-~~sDvVil~lPlT~~T~~lI~~~~ 240 (620)
++|||||+|.||+.+++.+...|++| .+||++. .... .+.++++++ .++|+|++++|..... . -.
T Consensus 1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~-~~~~-------~~~~~~~l~~~~~DvVv~~~~~~~~~-~----~~ 67 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRG-EHEK-------MVRGIDEFLQREMDVAVEAASQQAVK-D----YA 67 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSC-CCTT-------EESSHHHHTTSCCSEEEECSCHHHHH-H----HH
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCc-chhh-------hcCCHHHHhcCCCCEEEECCCHHHHH-H----HH
Confidence 37999999999999999998889997 6899875 2211 456899999 6999999999944222 1 22
Q ss_pred hhccCCCcEEEEcCCChhhcH---HHHHHHHHcCCc
Q 007040 241 LQHIKPGAFLVNTGSSQLLDD---CAVKQLLIDGTL 273 (620)
Q Consensus 241 L~~MK~gAiLINvgRG~vVDe---~AL~~AL~~G~I 273 (620)
...++.|..+|..+-+..-+. ..|.++.++..+
T Consensus 68 ~~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~ 103 (236)
T 2dc1_A 68 EKILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGR 103 (236)
T ss_dssp HHHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHCC
T ss_pred HHHHHCCCcEEEECcccCChHHHHHHHHHHHHhcCC
Confidence 456778999999988776655 567777665433
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.20 E-value=9.3e-07 Score=91.74 Aligned_cols=89 Identities=11% Similarity=0.127 Sum_probs=66.4
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccC-----------CceecCCHHhhhcCCcEEEEcccCCh
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPS-----------AARRMDTLNDLLAASDVISLHCAVTD 230 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~-----------g~~~~~sL~eLL~~sDvVil~lPlT~ 230 (620)
..+|+|||+|.||..+|..|...|++|++|+++....+..... ++....++.+ +..+|+|++++|. .
T Consensus 14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk~-~ 91 (335)
T 1z82_A 14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIPV-Q 91 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSCG-G
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECCH-H
Confidence 4579999999999999999999999999999975332211111 1344567888 8899999999994 5
Q ss_pred hhHhhcCHHHhhccCCCcEEEEcCCC
Q 007040 231 ETIQIINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 231 ~T~~lI~~~~L~~MK~gAiLINvgRG 256 (620)
.+..++.. +.. ++.++|++.-|
T Consensus 92 ~~~~v~~~--l~~--~~~~vv~~~nG 113 (335)
T 1z82_A 92 YIREHLLR--LPV--KPSMVLNLSKG 113 (335)
T ss_dssp GHHHHHTT--CSS--CCSEEEECCCC
T ss_pred HHHHHHHH--hCc--CCCEEEEEeCC
Confidence 66655532 222 79999999876
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.20 E-value=9.4e-07 Score=86.66 Aligned_cols=92 Identities=15% Similarity=0.103 Sum_probs=64.6
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEE-ECCCCCCCCccc-cCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHH
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLY-FDVPEGKGKVTF-PSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAE 239 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~-~dr~~~~~~~~~-~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~ 239 (620)
-++|||||+|.||..+|+.|...|++|++ +|++........ ..+.....+..+.+..+|+|++++|.. ....++..
T Consensus 23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp~~-~~~~v~~~- 100 (220)
T 4huj_A 23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVPYD-SIADIVTQ- 100 (220)
T ss_dssp SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESCGG-GHHHHHTT-
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCChH-HHHHHHHH-
Confidence 36899999999999999999999999999 999875443211 113333334556688999999999932 33333321
Q ss_pred HhhccCCCcEEEEcCCCh
Q 007040 240 CLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 240 ~L~~MK~gAiLINvgRG~ 257 (620)
+.. .++.++|+++-|-
T Consensus 101 -l~~-~~~~ivi~~~~g~ 116 (220)
T 4huj_A 101 -VSD-WGGQIVVDASNAI 116 (220)
T ss_dssp -CSC-CTTCEEEECCCCB
T ss_pred -hhc-cCCCEEEEcCCCC
Confidence 222 3588999998653
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.19 E-value=3.2e-06 Score=97.42 Aligned_cols=129 Identities=14% Similarity=0.025 Sum_probs=84.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-----------ccC-------------CceecCCHHhhhcC
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT-----------FPS-------------AARRMDTLNDLLAA 218 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~-----------~~~-------------g~~~~~sL~eLL~~ 218 (620)
++|||||+|.||..||..+...|++|++||+++...... ... .+....++ +.+++
T Consensus 313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~ 391 (725)
T 2wtb_A 313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESFRD 391 (725)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGGTT
T ss_pred cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHHCC
Confidence 579999999999999999999999999999986422110 001 12334566 57889
Q ss_pred CcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEE
Q 007040 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVL 298 (620)
Q Consensus 219 sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVI 298 (620)
||+||.++|...+.+.-+-.+....++++++|+..+.+- ....+.+.+.. .-..+++..|. |++ .+|.|.
T Consensus 392 aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl--~i~~la~~~~~-p~~~iG~hf~~-P~~------~~~lve 461 (725)
T 2wtb_A 392 VDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTI--DLNKIGERTKS-QDRIVGAHFFS-PAH------IMPLLE 461 (725)
T ss_dssp CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSS--CHHHHTTTCSC-TTTEEEEEECS-STT------TCCEEE
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCC--CHHHHHHHhcC-CCCEEEecCCC-Ccc------cCceEE
Confidence 999999999887765544456677899999996543332 22345444422 22234555555 322 356666
Q ss_pred EcCC
Q 007040 299 ILPR 302 (620)
Q Consensus 299 lTPH 302 (620)
+.++
T Consensus 462 vv~g 465 (725)
T 2wtb_A 462 IVRT 465 (725)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 6654
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.18 E-value=9.6e-07 Score=93.47 Aligned_cols=97 Identities=13% Similarity=0.055 Sum_probs=73.4
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc--------------cccCCceecCCHHhhhcCCcEEEEccc
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV--------------TFPSAARRMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~--------------~~~~g~~~~~sL~eLL~~sDvVil~lP 227 (620)
.++|+|||.|.||..+|..|...|++|.+|++++...+. .++..+....++.+.+..+|+|++++|
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaVp 108 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVVP 108 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEECCC
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEECCC
Confidence 468999999999999999999999999999997532110 011123445688899999999999999
Q ss_pred CChhhHhhcCHHHhhccCCCcEEEEcCCChhhc
Q 007040 228 VTDETIQIINAECLQHIKPGAFLVNTGSSQLLD 260 (620)
Q Consensus 228 lT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVD 260 (620)
.. ..+.++ .+....+++++++|++.-|-..+
T Consensus 109 ~~-~~~~vl-~~i~~~l~~~~ivvs~~kGi~~~ 139 (356)
T 3k96_A 109 SF-AFHEVI-TRMKPLIDAKTRIAWGTKGLAKG 139 (356)
T ss_dssp HH-HHHHHH-HHHGGGCCTTCEEEECCCSCBTT
T ss_pred HH-HHHHHH-HHHHHhcCCCCEEEEEeCCCCcC
Confidence 43 455555 34566789999999998765444
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.18 E-value=9.7e-07 Score=93.09 Aligned_cols=92 Identities=13% Similarity=0.112 Sum_probs=69.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC-------CEEEEECCCCC-----CCCcc--------------ccCCceecCCHHhhh
Q 007040 163 LVLGIVGRSASARALATRSLSFK-------MSVLYFDVPEG-----KGKVT--------------FPSAARRMDTLNDLL 216 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG-------~~V~~~dr~~~-----~~~~~--------------~~~g~~~~~sL~eLL 216 (620)
++|+|||.|.||..+|..|...| ++|++|+++.. ..... ...++....++.+++
T Consensus 22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea~ 101 (375)
T 1yj8_A 22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASVI 101 (375)
T ss_dssp BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHHH
Confidence 47999999999999999998878 99999999765 21100 112334456788889
Q ss_pred cCCcEEEEcccCChhhHhhcCHHHhh----ccCCCcEEEEcCCC
Q 007040 217 AASDVISLHCAVTDETIQIINAECLQ----HIKPGAFLVNTGSS 256 (620)
Q Consensus 217 ~~sDvVil~lPlT~~T~~lI~~~~L~----~MK~gAiLINvgRG 256 (620)
..+|+|++++|. .....++. +... .+++++++|++..|
T Consensus 102 ~~aDvVilav~~-~~~~~vl~-~i~~~~~~~l~~~~ivvs~~~G 143 (375)
T 1yj8_A 102 NDADLLIFIVPC-QYLESVLA-SIKESESIKIASHAKAISLTKG 143 (375)
T ss_dssp TTCSEEEECCCH-HHHHHHHH-HHTC---CCCCTTCEEEECCCS
T ss_pred cCCCEEEEcCCH-HHHHHHHH-HHhhhhhccCCCCCEEEEeCCc
Confidence 999999999994 55555553 3444 68889999999876
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=3.2e-06 Score=91.94 Aligned_cols=109 Identities=15% Similarity=0.111 Sum_probs=75.3
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCc--eecCCHHhh---------------hcCCcEE
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA--RRMDTLNDL---------------LAASDVI 222 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~--~~~~sL~eL---------------L~~sDvV 222 (620)
-+|.++.|||+|.||..+|..|...|++|++||+++...+.. ..+. ..-..++++ ++.||+|
T Consensus 9 ~~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L-~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvv 87 (431)
T 3ojo_A 9 HHGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKL-QNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVF 87 (431)
T ss_dssp ---CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHH-HTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEE
T ss_pred ccCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-HCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEE
Confidence 368899999999999999999999999999999987433211 1110 000112222 4579999
Q ss_pred EEcccCChh--------hHhhc--CHHHhhccCCCcEEEEcCCChhhcHHHHHHHHH
Q 007040 223 SLHCAVTDE--------TIQII--NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269 (620)
Q Consensus 223 il~lPlT~~--------T~~lI--~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~ 269 (620)
++|+|.... +..+. .......|++|+++|+.+.-.+-..+.+.+.+.
T Consensus 88 ii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~ 144 (431)
T 3ojo_A 88 IIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVI 144 (431)
T ss_dssp EECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHH
T ss_pred EEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHH
Confidence 999996542 12233 245677899999999999888777777776543
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=98.13 E-value=5.5e-06 Score=85.12 Aligned_cols=77 Identities=18% Similarity=0.310 Sum_probs=66.8
Q ss_pred ecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 160 CRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 160 L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
+.|+++.|||.|. +|+.+|..|...|++|++++++. .+|.+.+++||+|+.+++.. ++|..
T Consensus 148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t--------------~~L~~~~~~ADIVI~Avg~p----~~I~~ 209 (276)
T 3ngx_A 148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKT--------------KDIGSMTRSSKIVVVAVGRP----GFLNR 209 (276)
T ss_dssp CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SCHHHHHHHSSEEEECSSCT----TCBCG
T ss_pred cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCc--------------ccHHHhhccCCEEEECCCCC----ccccH
Confidence 6899999999996 79999999999999999998642 47899999999999999853 47776
Q ss_pred HHhhccCCCcEEEEcCCCh
Q 007040 239 ECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 239 ~~L~~MK~gAiLINvgRG~ 257 (620)
+. +|||+++||+|.-.
T Consensus 210 ~~---vk~GavVIDvgi~~ 225 (276)
T 3ngx_A 210 EM---VTPGSVVIDVGINY 225 (276)
T ss_dssp GG---CCTTCEEEECCCEE
T ss_pred hh---ccCCcEEEEeccCc
Confidence 54 59999999999765
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.13 E-value=2.4e-06 Score=79.37 Aligned_cols=103 Identities=12% Similarity=0.140 Sum_probs=79.1
Q ss_pred CcEEEEEeC----ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 162 GLVLGIVGR----SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 162 GktVGIIGl----G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
-++|+|||+ |.+|..+++.|...|++|+.+|+...-.. -.|...+.++.++....|++++++| .+....++.
T Consensus 13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~---i~G~~~~~sl~el~~~~Dlvii~vp-~~~v~~v~~ 88 (145)
T 2duw_A 13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKT---LLGQQGYATLADVPEKVDMVDVFRN-SEAAWGVAQ 88 (145)
T ss_dssp CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSE---ETTEECCSSTTTCSSCCSEEECCSC-STHHHHHHH
T ss_pred CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCcccccc---cCCeeccCCHHHcCCCCCEEEEEeC-HHHHHHHHH
Confidence 567999999 89999999999999999999988752111 1466667789999889999999999 466677764
Q ss_pred HHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
. .++ ...++++++.+.- ++++.+++++..+.
T Consensus 89 ~-~~~-~g~~~i~i~~~~~----~~~l~~~a~~~Gi~ 119 (145)
T 2duw_A 89 E-AIA-IGAKTLWLQLGVI----NEQAAVLAREAGLS 119 (145)
T ss_dssp H-HHH-HTCCEEECCTTCC----CHHHHHHHHTTTCE
T ss_pred H-HHH-cCCCEEEEcCChH----HHHHHHHHHHcCCE
Confidence 3 344 6677888876432 77888888877665
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=98.11 E-value=7e-06 Score=84.73 Aligned_cols=79 Identities=22% Similarity=0.336 Sum_probs=68.2
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||.|. +|+.+|..|...|++|++++++. .+|.+.+++||+|+.+++. -++|.
T Consensus 157 ~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t--------------~~L~~~~~~ADIVI~Avg~----p~~I~ 218 (285)
T 3p2o_A 157 DLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAGC----VNLLR 218 (285)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SCHHHHHTTCSEEEECSSC----TTCBC
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHhhcCCEEEECCCC----CCcCC
Confidence 58999999999998 59999999999999999998642 3789999999999999984 35677
Q ss_pred HHHhhccCCCcEEEEcCCChh
Q 007040 238 AECLQHIKPGAFLVNTGSSQL 258 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~v 258 (620)
.+. +|||+++||+|.-.+
T Consensus 219 ~~~---vk~GavVIDVgi~~~ 236 (285)
T 3p2o_A 219 SDM---VKEGVIVVDVGINRL 236 (285)
T ss_dssp GGG---SCTTEEEEECCCEEC
T ss_pred HHH---cCCCeEEEEeccCcc
Confidence 654 599999999997664
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=98.11 E-value=5.3e-06 Score=85.72 Aligned_cols=80 Identities=19% Similarity=0.253 Sum_probs=68.6
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||.|. +|+.+|+.|...|++|+.++++. .+|.+.+++||+|+.+++.. ++|.
T Consensus 156 ~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t--------------~~L~~~~~~ADIVI~Avg~p----~lI~ 217 (288)
T 1b0a_A 156 DTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT--------------KNLRHHVENADLLIVAVGKP----GFIP 217 (288)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC--------------SCHHHHHHHCSEEEECSCCT----TCBC
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHhccCCEEEECCCCc----CcCC
Confidence 58999999999997 59999999999999999997543 47899999999999999943 4777
Q ss_pred HHHhhccCCCcEEEEcCCChhh
Q 007040 238 AECLQHIKPGAFLVNTGSSQLL 259 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~vV 259 (620)
.+. +|||+++||+|.-.+-
T Consensus 218 ~~~---vk~GavVIDVgi~r~~ 236 (288)
T 1b0a_A 218 GDW---IKEGAIVIDVGINRLE 236 (288)
T ss_dssp TTT---SCTTCEEEECCCEECT
T ss_pred HHH---cCCCcEEEEccCCccC
Confidence 665 5999999999986643
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=98.11 E-value=7.8e-06 Score=84.40 Aligned_cols=79 Identities=22% Similarity=0.268 Sum_probs=67.9
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||.|. +|+.+|..|...|++|++++++. .+|.+.+++||+|+.+++. -++|.
T Consensus 158 ~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T--------------~~L~~~~~~ADIVI~Avg~----p~~I~ 219 (286)
T 4a5o_A 158 DLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT--------------RDLADHVSRADLVVVAAGK----PGLVK 219 (286)
T ss_dssp CCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC--------------SCHHHHHHTCSEEEECCCC----TTCBC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC--------------cCHHHHhccCCEEEECCCC----CCCCC
Confidence 58999999999987 79999999999999999997642 3688999999999999984 35777
Q ss_pred HHHhhccCCCcEEEEcCCChh
Q 007040 238 AECLQHIKPGAFLVNTGSSQL 258 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~v 258 (620)
.+. +|||+++||+|.-.+
T Consensus 220 ~~~---vk~GavVIDvgi~~~ 237 (286)
T 4a5o_A 220 GEW---IKEGAIVIDVGINRQ 237 (286)
T ss_dssp GGG---SCTTCEEEECCSCSS
T ss_pred HHH---cCCCeEEEEeccccc
Confidence 654 599999999997654
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=98.10 E-value=7.8e-06 Score=84.37 Aligned_cols=78 Identities=19% Similarity=0.288 Sum_probs=67.4
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||.|. +|+.+|..|...|++|++++++. .+|.+.+++||+|+.+++. -++|.
T Consensus 158 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t--------------~~L~~~~~~ADIVI~Avg~----p~~I~ 219 (285)
T 3l07_A 158 KTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT--------------TDLKSHTTKADILIVAVGK----PNFIT 219 (285)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SSHHHHHTTCSEEEECCCC----TTCBC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHhcccCCEEEECCCC----CCCCC
Confidence 58999999999998 69999999999999999998642 3789999999999999984 35677
Q ss_pred HHHhhccCCCcEEEEcCCCh
Q 007040 238 AECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~ 257 (620)
.+. +|||+++||+|.-.
T Consensus 220 ~~~---vk~GavVIDvgi~~ 236 (285)
T 3l07_A 220 ADM---VKEGAVVIDVGINH 236 (285)
T ss_dssp GGG---SCTTCEEEECCCEE
T ss_pred HHH---cCCCcEEEEecccC
Confidence 654 59999999999765
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=8.8e-06 Score=84.55 Aligned_cols=130 Identities=20% Similarity=0.297 Sum_probs=87.4
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||.|. +|+.+|+.|...|++|++++++. .+|.+.+++||+||.+++.. ++|.
T Consensus 162 ~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t--------------~~L~~~~~~ADIVI~Avg~p----~~I~ 223 (301)
T 1a4i_A 162 PIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT--------------AHLDEEVNKGDILVVATGQP----EMVK 223 (301)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SSHHHHHTTCSEEEECCCCT----TCBC
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCc--------------ccHHHHhccCCEEEECCCCc----ccCC
Confidence 58999999999996 69999999999999999998542 47999999999999999963 4787
Q ss_pred HHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcC-CcceeEeecC-CCCCCCCccccCCCcEEEcCCCCCCcHHHHHHHH
Q 007040 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDG-TLAGCALDGA-EGPQWMEAWVREMPNVLILPRSADYSEEVWMEIR 315 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G-~I~GAaLDV~-E~P~~~~spL~~~pNVIlTPHiAg~T~ea~~~~~ 315 (620)
.+. +|||+++||+|.-.+-|... ++| ++-| ||- +.-. +. --.+||==+|.-+-+..-+.
T Consensus 224 ~~~---vk~GavVIDVgi~~~~d~~~-----~~g~klvG---DVdf~~v~-------~~-a~~iTPVPGGVGpmTiamLl 284 (301)
T 1a4i_A 224 GEW---IKPGAIVIDCGINYVPDDKK-----PNGRKVVG---DVAYDEAK-------ER-ASFITPVPGGVGPMTVAMLM 284 (301)
T ss_dssp GGG---SCTTCEEEECCCBC---------------CCBC---SBCHHHHT-------TT-CSEECCSSSSHHHHHHHHHH
T ss_pred HHH---cCCCcEEEEccCCCcccccc-----cCCCeeec---cccHHHhh-------hh-ceEeCCCCCCccHHHHHHHH
Confidence 765 57999999999876443211 234 4433 662 2200 11 23589976666554444443
Q ss_pred HHHHHHHHHH
Q 007040 316 DKAISVLQTF 325 (620)
Q Consensus 316 ~~a~enL~~~ 325 (620)
+.+++..+++
T Consensus 285 ~Ntv~aa~~~ 294 (301)
T 1a4i_A 285 QSTVESAKRF 294 (301)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=98.09 E-value=8.6e-06 Score=83.90 Aligned_cols=80 Identities=20% Similarity=0.341 Sum_probs=68.6
Q ss_pred eecCcEEEEEeCChh-hHHHHHHHhhC--CCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhh
Q 007040 159 RCRGLVLGIVGRSAS-ARALATRSLSF--KMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQI 235 (620)
Q Consensus 159 ~L~GktVGIIGlG~I-G~~vA~~Lkaf--G~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~l 235 (620)
++.|+++.|||.|.| |+.+|+.|... |++|+.++++. .+|.+.+++||+|+.+++.. ++
T Consensus 155 ~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t--------------~~L~~~~~~ADIVI~Avg~p----~~ 216 (281)
T 2c2x_A 155 SIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT--------------RDLPALTRQADIVVAAVGVA----HL 216 (281)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC--------------SCHHHHHTTCSEEEECSCCT----TC
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch--------------hHHHHHHhhCCEEEECCCCC----cc
Confidence 589999999999986 99999999999 89999997554 47999999999999999944 46
Q ss_pred cCHHHhhccCCCcEEEEcCCChhh
Q 007040 236 INAECLQHIKPGAFLVNTGSSQLL 259 (620)
Q Consensus 236 I~~~~L~~MK~gAiLINvgRG~vV 259 (620)
|..+. +|+|+++||+|.-.+.
T Consensus 217 I~~~~---vk~GavVIDVgi~r~~ 237 (281)
T 2c2x_A 217 LTADM---VRPGAAVIDVGVSRTD 237 (281)
T ss_dssp BCGGG---SCTTCEEEECCEEEET
T ss_pred cCHHH---cCCCcEEEEccCCCCC
Confidence 87765 5899999999976643
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=3.8e-06 Score=88.05 Aligned_cols=91 Identities=23% Similarity=0.188 Sum_probs=69.1
Q ss_pred eecCcEEEEEeCChh-hHHHHHHHhhCCCEEEEECCCCCCC---CccccCCce-e-----c--CCHHhhhcCCcEEEEcc
Q 007040 159 RCRGLVLGIVGRSAS-ARALATRSLSFKMSVLYFDVPEGKG---KVTFPSAAR-R-----M--DTLNDLLAASDVISLHC 226 (620)
Q Consensus 159 ~L~GktVGIIGlG~I-G~~vA~~LkafG~~V~~~dr~~~~~---~~~~~~g~~-~-----~--~sL~eLL~~sDvVil~l 226 (620)
++.|+++.|||.|.| |+.+|+.|.+.|++|+++|++.... ...+..... . . .+|.+.+.+||+||.++
T Consensus 174 ~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIsAt 253 (320)
T 1edz_A 174 RLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGV 253 (320)
T ss_dssp TTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEECC
T ss_pred CCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEEECC
Confidence 589999999999976 9999999999999999999872110 111111111 1 1 57899999999999999
Q ss_pred cCChhhHhh-cCHHHhhccCCCcEEEEcCCC
Q 007040 227 AVTDETIQI-INAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 227 PlT~~T~~l-I~~~~L~~MK~gAiLINvgRG 256 (620)
+.. ++ |..+. +|+|+++||+|..
T Consensus 254 g~p----~~vI~~e~---vk~GavVIDVgi~ 277 (320)
T 1edz_A 254 PSE----NYKFPTEY---IKEGAVCINFACT 277 (320)
T ss_dssp CCT----TCCBCTTT---SCTTEEEEECSSS
T ss_pred CCC----cceeCHHH---cCCCeEEEEcCCC
Confidence 853 34 77655 5899999999874
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=5.9e-06 Score=84.82 Aligned_cols=107 Identities=8% Similarity=0.038 Sum_probs=73.7
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCccccC-CceecCCHHhhhcCCcEEEEcccCC--hhhHhh
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPS-AARRMDTLNDLLAASDVISLHCAVT--DETIQI 235 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~~~-g~~~~~sL~eLL~~sDvVil~lPlT--~~T~~l 235 (620)
+.|+++.|||.|.+|+++|..|...|+ +|++++|+.......... .....+++.+++..+|+||+++|.. +.....
T Consensus 115 l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~~ 194 (277)
T 3don_A 115 IEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNGNTDSV 194 (277)
T ss_dssp GGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC-------CCS
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCCCCcCC
Confidence 689999999999999999999999999 999999987554322211 1122345677788999999999975 222222
Q ss_pred cCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcC
Q 007040 236 INAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDG 271 (620)
Q Consensus 236 I~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G 271 (620)
+. +..++++++++++...+.. . .|+++.++.
T Consensus 195 l~---~~~l~~~~~V~D~vY~P~~-T-~ll~~A~~~ 225 (277)
T 3don_A 195 IS---LNRLASHTLVSDIVYNPYK-T-PILIEAEQR 225 (277)
T ss_dssp SC---CTTCCSSCEEEESCCSSSS-C-HHHHHHHHT
T ss_pred CC---HHHcCCCCEEEEecCCCCC-C-HHHHHHHHC
Confidence 32 4567889999998776543 2 355444443
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.05 E-value=8.5e-06 Score=84.67 Aligned_cols=79 Identities=22% Similarity=0.294 Sum_probs=67.2
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHH--hhhcCCcEEEEcccCChhhHhh
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLN--DLLAASDVISLHCAVTDETIQI 235 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~--eLL~~sDvVil~lPlT~~T~~l 235 (620)
++.|+++.|||.|. +|+.+|..|...|++|++++++. .+|. +.+++||+|+.++|.. ++
T Consensus 162 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T--------------~~l~l~~~~~~ADIVI~Avg~p----~~ 223 (300)
T 4a26_A 162 EMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGT--------------STEDMIDYLRTADIVIAAMGQP----GY 223 (300)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTS--------------CHHHHHHHHHTCSEEEECSCCT----TC
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCC--------------CCchhhhhhccCCEEEECCCCC----CC
Confidence 58999999999998 69999999999999999998743 1466 8999999999999953 47
Q ss_pred cCHHHhhccCCCcEEEEcCCChh
Q 007040 236 INAECLQHIKPGAFLVNTGSSQL 258 (620)
Q Consensus 236 I~~~~L~~MK~gAiLINvgRG~v 258 (620)
|..+. +|+|+++||+|.-.+
T Consensus 224 I~~~~---vk~GavVIDvgi~~~ 243 (300)
T 4a26_A 224 VKGEW---IKEGAAVVDVGTTPV 243 (300)
T ss_dssp BCGGG---SCTTCEEEECCCEEE
T ss_pred CcHHh---cCCCcEEEEEeccCC
Confidence 77654 599999999997554
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.00 E-value=8.5e-06 Score=82.49 Aligned_cols=105 Identities=13% Similarity=0.090 Sum_probs=75.7
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcccc-CCceecCCHHhhhcCCcEEEEcccCChhh-Hhhc
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFP-SAARRMDTLNDLLAASDVISLHCAVTDET-IQII 236 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~~-~g~~~~~sL~eLL~~sDvVil~lPlT~~T-~~lI 236 (620)
+.| +++|||.|.+|++++..|...|+ +|++++|+......... .+.....++.++++.+|+|++++|..-.. ...|
T Consensus 107 ~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm~p~~~~i 185 (253)
T 3u62_A 107 VKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMKGEELPV 185 (253)
T ss_dssp CCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTTTSCCCSC
T ss_pred CCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCCCCCCCCC
Confidence 467 89999999999999999999999 99999998744332111 12234567888899999999999964211 1234
Q ss_pred CHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcC
Q 007040 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDG 271 (620)
Q Consensus 237 ~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G 271 (620)
.. ..++++.+++++.-+ ...-|.++.+.|
T Consensus 186 ~~---~~l~~~~~V~Divy~---~T~ll~~A~~~G 214 (253)
T 3u62_A 186 SD---DSLKNLSLVYDVIYF---DTPLVVKARKLG 214 (253)
T ss_dssp CH---HHHTTCSEEEECSSS---CCHHHHHHHHHT
T ss_pred CH---HHhCcCCEEEEeeCC---CcHHHHHHHHCC
Confidence 43 336789999999888 444455555554
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.97 E-value=6.4e-06 Score=84.98 Aligned_cols=109 Identities=16% Similarity=0.083 Sum_probs=74.9
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcc---ccC---CceecCCHHhhhcCCcEEEEcccCChhh
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVT---FPS---AARRMDTLNDLLAASDVISLHCAVTDET 232 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~---~~~---g~~~~~sL~eLL~~sDvVil~lPlT~~T 232 (620)
+.|++++|||.|.+|+++|..|...|+ +|++++|+....... +.. .....+++.+.+..+|+|++++|.....
T Consensus 139 l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~~~ 218 (297)
T 2egg_A 139 LDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGMHP 218 (297)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTCSS
T ss_pred CCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCCCC
Confidence 678999999999999999999999998 999999986432211 110 1111235667788999999999976421
Q ss_pred H--h-hcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCc
Q 007040 233 I--Q-IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTL 273 (620)
Q Consensus 233 ~--~-lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I 273 (620)
. . .+. ...++++++++|+...+.. . .|.+..++..+
T Consensus 219 ~~~~~~i~---~~~l~~~~~v~D~~y~P~~-T-~ll~~A~~~G~ 257 (297)
T 2egg_A 219 RVEVQPLS---LERLRPGVIVSDIIYNPLE-T-KWLKEAKARGA 257 (297)
T ss_dssp CCSCCSSC---CTTCCTTCEEEECCCSSSS-C-HHHHHHHHTTC
T ss_pred CCCCCCCC---HHHcCCCCEEEEcCCCCCC-C-HHHHHHHHCcC
Confidence 1 1 133 3457899999999885432 2 35555555443
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.93 E-value=2.9e-06 Score=80.00 Aligned_cols=96 Identities=8% Similarity=-0.020 Sum_probs=66.4
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhC-CCEEEEECCCCCCCCccccCCcee----cCC---HHhh--hcCCcEEEEcccC
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSF-KMSVLYFDVPEGKGKVTFPSAARR----MDT---LNDL--LAASDVISLHCAV 228 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~Lkaf-G~~V~~~dr~~~~~~~~~~~g~~~----~~s---L~eL--L~~sDvVil~lPl 228 (620)
.+.+++|+|+|+|.||+.+|+.|... |++|+++|+++.........+... ..+ +.++ +..+|+|++++|.
T Consensus 36 ~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~ 115 (183)
T 3c85_A 36 NPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMPH 115 (183)
T ss_dssp CCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCSS
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCCC
Confidence 46788999999999999999999999 999999999864332211122211 112 4444 6789999999997
Q ss_pred ChhhHhhcCHHHhhccCCCcEEEEcCCC
Q 007040 229 TDETIQIINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 229 T~~T~~lI~~~~L~~MK~gAiLINvgRG 256 (620)
...+..++ ..+..+.+...+|....+
T Consensus 116 ~~~~~~~~--~~~~~~~~~~~ii~~~~~ 141 (183)
T 3c85_A 116 HQGNQTAL--EQLQRRNYKGQIAAIAEY 141 (183)
T ss_dssp HHHHHHHH--HHHHHTTCCSEEEEEESS
T ss_pred hHHHHHHH--HHHHHHCCCCEEEEEECC
Confidence 65554443 355667766666665443
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=9.5e-06 Score=83.07 Aligned_cols=105 Identities=16% Similarity=-0.015 Sum_probs=71.7
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHh
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECL 241 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L 241 (620)
|+++.|||.|.+|++++..|...|.+|++++|+..........++.. .+++++ ..+|+||+++|........++.+.+
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~~~~-~~~~~l-~~~DiVInaTp~Gm~~~~~l~~~~l 195 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDC-FMEPPK-SAFDLIINATSASLHNELPLNKEVL 195 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTCEE-ESSCCS-SCCSEEEECCTTCCCCSCSSCHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeE-ecHHHh-ccCCEEEEcccCCCCCCCCCChHHH
Confidence 78999999999999999999999999999999986543221112221 234443 3899999999976332234555533
Q ss_pred h-ccCCCcEEEEcCCChhhcHHHHHHHHHcC
Q 007040 242 Q-HIKPGAFLVNTGSSQLLDDCAVKQLLIDG 271 (620)
Q Consensus 242 ~-~MK~gAiLINvgRG~vVDe~AL~~AL~~G 271 (620)
. .++++.+++|+...+ ... |+++.++.
T Consensus 196 ~~~l~~~~~v~D~vY~P--~T~-ll~~A~~~ 223 (269)
T 3phh_A 196 KGYFKEGKLAYDLAYGF--LTP-FLSLAKEL 223 (269)
T ss_dssp HHHHHHCSEEEESCCSS--CCH-HHHHHHHT
T ss_pred HhhCCCCCEEEEeCCCC--chH-HHHHHHHC
Confidence 3 567788888888776 333 44444443
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.88 E-value=5.1e-06 Score=84.36 Aligned_cols=104 Identities=11% Similarity=-0.001 Sum_probs=69.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-----C-CEEEEECCCCCCCCcccc-CCceecC-------------CHHhhhcCCcEE
Q 007040 163 LVLGIVGRSASARALATRSLSF-----K-MSVLYFDVPEGKGKVTFP-SAARRMD-------------TLNDLLAASDVI 222 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-----G-~~V~~~dr~~~~~~~~~~-~g~~~~~-------------sL~eLL~~sDvV 222 (620)
++|+|||+|.||..+|..|... | ++|++|++ ....+.... .+..... +..+.+..+|+|
T Consensus 9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 87 (317)
T 2qyt_A 9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVDYI 87 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCCEE
Confidence 5799999999999999999988 9 99999998 422111111 1222111 223457889999
Q ss_pred EEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 223 SLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 223 il~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
++++|... +..++ ......++++.++|.+.-| +-..+.|.+.+..
T Consensus 88 il~vk~~~-~~~v~-~~i~~~l~~~~~iv~~~nG-~~~~~~l~~~l~~ 132 (317)
T 2qyt_A 88 LFCTKDYD-MERGV-AEIRPMIGQNTKILPLLNG-ADIAERMRTYLPD 132 (317)
T ss_dssp EECCSSSC-HHHHH-HHHGGGEEEEEEEEECSCS-SSHHHHHTTTSCT
T ss_pred EEecCccc-HHHHH-HHHHhhcCCCCEEEEccCC-CCcHHHHHHHCCC
Confidence 99999764 44444 3344567789999998776 2223445555543
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=3.6e-05 Score=70.90 Aligned_cols=97 Identities=11% Similarity=-0.003 Sum_probs=64.6
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-cCCceec----CC---HHhh-hcCCcEEEEcccCC
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF-PSAARRM----DT---LNDL-LAASDVISLHCAVT 229 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~-~~g~~~~----~s---L~eL-L~~sDvVil~lPlT 229 (620)
...+++|.|+|+|.||+.+|+.|+..|++|+++|+++....... ..+.... .+ +.+. +..+|+|++++|..
T Consensus 16 ~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~ 95 (155)
T 2g1u_A 16 KQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTNDD 95 (155)
T ss_dssp -CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSCH
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCCc
Confidence 46788999999999999999999999999999999865443222 2232211 11 3333 67899999999964
Q ss_pred hhhHhhcCHHHhhccCCCcEEEEcCCCh
Q 007040 230 DETIQIINAECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 230 ~~T~~lI~~~~L~~MK~gAiLINvgRG~ 257 (620)
..+..+ ......+.+...+|-..++.
T Consensus 96 ~~~~~~--~~~~~~~~~~~~iv~~~~~~ 121 (155)
T 2g1u_A 96 STNFFI--SMNARYMFNVENVIARVYDP 121 (155)
T ss_dssp HHHHHH--HHHHHHTSCCSEEEEECSSG
T ss_pred HHHHHH--HHHHHHHCCCCeEEEEECCH
Confidence 333222 23444455566666666654
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.82 E-value=1.6e-06 Score=87.74 Aligned_cols=86 Identities=15% Similarity=0.123 Sum_probs=56.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEE-EEECCCCCCCCccc-cCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHH
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSV-LYFDVPEGKGKVTF-PSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V-~~~dr~~~~~~~~~-~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~ 240 (620)
++|||||+|.||..+|+.|... ++| .+||++........ ..+. ...++++++.++|+|++++|... ...++
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~DvVilav~~~~-~~~v~---- 75 (276)
T 2i76_A 3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGG-KAATLEKHPELNGVVFVIVPDRY-IKTVA---- 75 (276)
T ss_dssp -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCC-CCCSSCCCCC---CEEECSCTTT-HHHHH----
T ss_pred ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCC-ccCCHHHHHhcCCEEEEeCChHH-HHHHH----
Confidence 4699999999999999999877 899 58998764332111 1123 44577888889999999999763 23333
Q ss_pred hhcc-CCCcEEEEcCCC
Q 007040 241 LQHI-KPGAFLVNTGSS 256 (620)
Q Consensus 241 L~~M-K~gAiLINvgRG 256 (620)
..+ +++.++||++-+
T Consensus 76 -~~l~~~~~ivi~~s~~ 91 (276)
T 2i76_A 76 -NHLNLGDAVLVHCSGF 91 (276)
T ss_dssp -TTTCCSSCCEEECCSS
T ss_pred -HHhccCCCEEEECCCC
Confidence 333 689999999854
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=2e-05 Score=83.30 Aligned_cols=92 Identities=16% Similarity=0.247 Sum_probs=68.3
Q ss_pred cCcEEEEEeCChhhHHHHHHHh-hCC-CEEEEECCCCCCCCccccC-----C--ceecCCHHhhhcCCcEEEEcccCChh
Q 007040 161 RGLVLGIVGRSASARALATRSL-SFK-MSVLYFDVPEGKGKVTFPS-----A--ARRMDTLNDLLAASDVISLHCAVTDE 231 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lk-afG-~~V~~~dr~~~~~~~~~~~-----g--~~~~~sL~eLL~~sDvVil~lPlT~~ 231 (620)
..++|||||.|.||+.+++.+. ..+ .+|.+||++.......... + +....+++++++++|+|++++|...
T Consensus 128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~~- 206 (350)
T 1x7d_A 128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKA- 206 (350)
T ss_dssp TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCSS-
T ss_pred cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCCC-
Confidence 4678999999999999998875 344 5899999986443311110 3 3446789999999999999999762
Q ss_pred hHhhcCHHHhhccCCCcEEEEcCCC
Q 007040 232 TIQIINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 232 T~~lI~~~~L~~MK~gAiLINvgRG 256 (620)
...+|.. ..+++|+.++++|..
T Consensus 207 ~~pvl~~---~~l~~G~~V~~vgs~ 228 (350)
T 1x7d_A 207 YATIITP---DMLEPGMHLNAVGGD 228 (350)
T ss_dssp EEEEECG---GGCCTTCEEEECSCC
T ss_pred CCceecH---HHcCCCCEEEECCCC
Confidence 2345553 568899999999863
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=4.1e-05 Score=80.17 Aligned_cols=167 Identities=13% Similarity=0.057 Sum_probs=104.0
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc--------------------c-cc----CCceecCCHHhh
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV--------------------T-FP----SAARRMDTLNDL 215 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~--------------------~-~~----~g~~~~~sL~eL 215 (620)
.-.+|+|||.|.||..+|..+...|++|+.||+++..... . .. ..+....++.+.
T Consensus 5 ~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a 84 (319)
T 3ado_A 5 AAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEA 84 (319)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHH
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhH
Confidence 4568999999999999999999999999999987532110 0 00 012345688899
Q ss_pred hcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCC
Q 007040 216 LAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMP 295 (620)
Q Consensus 216 L~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~p 295 (620)
++.||+|+=++|..-+.+.-+=+++=+.++|+++|-...++ +....|.+.+.. .-..+++=.| +|++. -||.
T Consensus 85 ~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSs--l~is~ia~~~~~-p~r~ig~Hff-NP~~~-m~LV--- 156 (319)
T 3ado_A 85 VEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSC--LLPSKLFTGLAH-VKQCIVAHPV-NPPYY-IPLV--- 156 (319)
T ss_dssp TTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSS--CCHHHHHTTCTT-GGGEEEEEEC-SSTTT-CCEE---
T ss_pred hccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhh--ccchhhhhhccC-CCcEEEecCC-CCccc-cchH---
Confidence 99999999999999888886666666778999998765555 344555555432 3333344323 33331 1222
Q ss_pred cEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCccCC
Q 007040 296 NVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTEGCENE 345 (620)
Q Consensus 296 NVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~p~nvVn~~~~y~~~ 345 (620)
-||-+|+++..+. +.+ .+-+++ -|+.|.-++..-.|+..+
T Consensus 157 Eiv~g~~Ts~~~~---~~~----~~~~~~---~gk~pv~v~kd~pGFi~N 196 (319)
T 3ado_A 157 ELVPHPETSPATV---DRT----HALMRK---IGQSPVRVLKEIDGFVLN 196 (319)
T ss_dssp EEEECTTCCHHHH---HHH----HHHHHH---TTCEEEECSSCCTTTTHH
T ss_pred HhcCCCCCcHHHH---HHH----HHHHHH---hCCccCCcCCCCCCEeHH
Confidence 2555665443332 222 222222 355566666666666543
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=97.73 E-value=6.5e-05 Score=78.25 Aligned_cols=89 Identities=24% Similarity=0.328 Sum_probs=66.9
Q ss_pred cCcEEEEEeCChhhHHHHHHHhh-CC-CEEEEECCCCCCCCccc--c--CCc--eecCCHHhhhcCCcEEEEcccCChhh
Q 007040 161 RGLVLGIVGRSASARALATRSLS-FK-MSVLYFDVPEGKGKVTF--P--SAA--RRMDTLNDLLAASDVISLHCAVTDET 232 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lka-fG-~~V~~~dr~~~~~~~~~--~--~g~--~~~~sL~eLL~~sDvVil~lPlT~~T 232 (620)
..++++|||.|.||+.+++.|.. ++ -+|.+|||+ ....... . .+. ... ++++++++||+|++|+|..
T Consensus 120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-~a~~la~~l~~~~g~~~~~~-~~~eav~~aDIVi~aT~s~--- 194 (313)
T 3hdj_A 120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY-ASPEILERIGRRCGVPARMA-APADIAAQADIVVTATRST--- 194 (313)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT-CCHHHHHHHHHHHTSCEEEC-CHHHHHHHCSEEEECCCCS---
T ss_pred CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc-HHHHHHHHHHHhcCCeEEEe-CHHHHHhhCCEEEEccCCC---
Confidence 46789999999999999999975 44 489999999 3322100 0 122 344 8999999999999999975
Q ss_pred HhhcCHHHhhccCCCcEEEEcCCCh
Q 007040 233 IQIINAECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 233 ~~lI~~~~L~~MK~gAiLINvgRG~ 257 (620)
..+|.. ..++||++++++|...
T Consensus 195 ~pvl~~---~~l~~G~~V~~vGs~~ 216 (313)
T 3hdj_A 195 TPLFAG---QALRAGAFVGAIGSSL 216 (313)
T ss_dssp SCSSCG---GGCCTTCEEEECCCSS
T ss_pred CcccCH---HHcCCCcEEEECCCCC
Confidence 346653 4689999999998743
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=97.68 E-value=2.6e-05 Score=80.97 Aligned_cols=91 Identities=15% Similarity=0.096 Sum_probs=66.1
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCC-------------ceecCCHHhhhcCCcEEEEcccC
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSA-------------ARRMDTLNDLLAASDVISLHCAV 228 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g-------------~~~~~sL~eLL~~sDvVil~lPl 228 (620)
.++|+|||.|.||..+|..|...|++|.+|++.. ..+.....+ +....++++ +..+|+|++++|.
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilavk~ 80 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALAGEAINVLARGA-TLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAVKA 80 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCHH-HHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECCCH
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEEEChH-HHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeCCc
Confidence 3679999999999999999999999999999852 111001111 112346766 5889999999996
Q ss_pred ChhhHhhcCHHHhhccCCCcEEEEcCCC
Q 007040 229 TDETIQIINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 229 T~~T~~lI~~~~L~~MK~gAiLINvgRG 256 (620)
..+..++. .....+++++++|.+.-|
T Consensus 81 -~~~~~~~~-~l~~~l~~~~~iv~~~nG 106 (335)
T 3ghy_A 81 -PALESVAA-GIAPLIGPGTCVVVAMNG 106 (335)
T ss_dssp -HHHHHHHG-GGSSSCCTTCEEEECCSS
T ss_pred -hhHHHHHH-HHHhhCCCCCEEEEECCC
Confidence 45555553 344457889999999888
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=3.7e-05 Score=68.20 Aligned_cols=97 Identities=11% Similarity=0.101 Sum_probs=59.9
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCcee----cCC---HHhh-hcCCcEEEEcccCCh
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR----MDT---LNDL-LAASDVISLHCAVTD 230 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~----~~s---L~eL-L~~sDvVil~lPlT~ 230 (620)
.+.+++|+|+|.|.||+.+|+.|...|++|+++|++..........+... ..+ +.++ +..+|+|++++|...
T Consensus 3 ~~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~ 82 (144)
T 2hmt_A 3 RIKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANI 82 (144)
T ss_dssp ---CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSCH
T ss_pred CCcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCch
Confidence 35678899999999999999999999999999998753222111112111 112 3333 568999999999752
Q ss_pred hhHhhcCHHHhhccCCCcEEEEcCCCh
Q 007040 231 ETIQIINAECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 231 ~T~~lI~~~~L~~MK~gAiLINvgRG~ 257 (620)
++. +.-......+.+. .+|-...+.
T Consensus 83 ~~~-~~~~~~~~~~~~~-~ii~~~~~~ 107 (144)
T 2hmt_A 83 QAS-TLTTLLLKELDIP-NIWVKAQNY 107 (144)
T ss_dssp HHH-HHHHHHHHHTTCS-EEEEECCSH
T ss_pred HHH-HHHHHHHHHcCCC-eEEEEeCCH
Confidence 222 1222344556666 555555544
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=97.64 E-value=4.6e-05 Score=78.73 Aligned_cols=104 Identities=11% Similarity=0.103 Sum_probs=69.6
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-------------cCCceecCCHHhhhcCCcEEEEcc
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF-------------PSAARRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~-------------~~g~~~~~sL~eLL~~sDvVil~l 226 (620)
...++|+|||.|.||..+|..|...|++|..| ++....+... ...+....++++ +..+|+|++++
T Consensus 17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vilav 94 (318)
T 3hwr_A 17 FQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQGADLVLFCV 94 (318)
T ss_dssp ---CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTTCSEEEECC
T ss_pred ccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEEEEc
Confidence 35678999999999999999999999999999 6542211000 011122345654 57899999999
Q ss_pred cCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHH
Q 007040 227 AVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLL 268 (620)
Q Consensus 227 PlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL 268 (620)
|.. .+..++ ......+++++++|.+.-|= -.++.|.+.+
T Consensus 95 k~~-~~~~~l-~~l~~~l~~~~~iv~~~nGi-~~~~~l~~~~ 133 (318)
T 3hwr_A 95 KST-DTQSAA-LAMKPALAKSALVLSLQNGV-ENADTLRSLL 133 (318)
T ss_dssp CGG-GHHHHH-HHHTTTSCTTCEEEEECSSS-SHHHHHHHHC
T ss_pred ccc-cHHHHH-HHHHHhcCCCCEEEEeCCCC-CcHHHHHHHc
Confidence 965 555555 33445678999999987762 2224555555
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=97.62 E-value=2.4e-05 Score=67.18 Aligned_cols=89 Identities=16% Similarity=0.031 Sum_probs=59.5
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCC-CEEEEECCCCCCCCccccCCc-------eecCCHHhhhcCCcEEEEcccCChhh
Q 007040 161 RGLVLGIVGRSASARALATRSLSFK-MSVLYFDVPEGKGKVTFPSAA-------RRMDTLNDLLAASDVISLHCAVTDET 232 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG-~~V~~~dr~~~~~~~~~~~g~-------~~~~sL~eLL~~sDvVil~lPlT~~T 232 (620)
.+++|+|+|.|.||+.+++.|...| ++|++++++..........+. .....+.+++..+|+|+.++|... +
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~~-~ 82 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFFL-T 82 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGGG-H
T ss_pred CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCchh-h
Confidence 3678999999999999999999999 899999997643221111111 112346677889999999997442 2
Q ss_pred HhhcCHHHhhccCCCcEEEEcC
Q 007040 233 IQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 233 ~~lI~~~~L~~MK~gAiLINvg 254 (620)
..++. ...+.|..+++.+
T Consensus 83 ~~~~~----~~~~~g~~~~~~~ 100 (118)
T 3ic5_A 83 PIIAK----AAKAAGAHYFDLT 100 (118)
T ss_dssp HHHHH----HHHHTTCEEECCC
T ss_pred HHHHH----HHHHhCCCEEEec
Confidence 22221 1234566677665
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00017 Score=66.40 Aligned_cols=104 Identities=14% Similarity=0.218 Sum_probs=75.5
Q ss_pred cCcEEEEEeC----ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhc
Q 007040 161 RGLVLGIVGR----SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII 236 (620)
Q Consensus 161 ~GktVGIIGl----G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI 236 (620)
.-++|+|||. |++|..+++.|+..|++|+.+++...... . .|...+.++.++-...|++++++|. +.+..++
T Consensus 12 ~p~~vaVvGas~~~g~~G~~~~~~l~~~G~~v~~vnp~~~~~~--i-~G~~~~~sl~el~~~vDlavi~vp~-~~~~~v~ 87 (140)
T 1iuk_A 12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEE--L-FGEEAVASLLDLKEPVDILDVFRPP-SALMDHL 87 (140)
T ss_dssp HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSE--E-TTEECBSSGGGCCSCCSEEEECSCH-HHHTTTH
T ss_pred CCCEEEEECCCCCCCChHHHHHHHHHHCCCEEEEeCCCcccCc--C-CCEEecCCHHHCCCCCCEEEEEeCH-HHHHHHH
Confidence 4567999999 89999999999999999888777621111 1 4566677899998899999999996 5566666
Q ss_pred CHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 237 ~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
. +..+ ...++++++.+-. ++++.+..++..+.
T Consensus 88 ~-~~~~-~gi~~i~~~~g~~----~~~~~~~a~~~Gir 119 (140)
T 1iuk_A 88 P-EVLA-LRPGLVWLQSGIR----HPEFEKALKEAGIP 119 (140)
T ss_dssp H-HHHH-HCCSCEEECTTCC----CHHHHHHHHHTTCC
T ss_pred H-HHHH-cCCCEEEEcCCcC----HHHHHHHHHHcCCE
Confidence 3 3444 3345676665442 57788888776654
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00021 Score=73.66 Aligned_cols=107 Identities=12% Similarity=0.057 Sum_probs=74.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc---------cCC------ceecCCHHhhhcCCcEEEEccc
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF---------PSA------ARRMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~---------~~g------~~~~~sL~eLL~~sDvVil~lP 227 (620)
++|+|||.|.||..+|..|...|.+|.+|+|... +... ..+ .....+++++...+|+|++++|
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~--~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilavK 80 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSDY--ETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCIK 80 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTTH--HHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCChH--HHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEecC
Confidence 5799999999999999999999999999998752 1000 011 1123567777668999999999
Q ss_pred CChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 228 VTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 228 lT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
... +..++ ......+++++++|.+.-| +-.++.|.+.+-...+.
T Consensus 81 ~~~-~~~~l-~~l~~~l~~~t~Iv~~~nG-i~~~~~l~~~~~~~~vl 124 (320)
T 3i83_A 81 VVE-GADRV-GLLRDAVAPDTGIVLISNG-IDIEPEVAAAFPDNEVI 124 (320)
T ss_dssp CCT-TCCHH-HHHTTSCCTTCEEEEECSS-SSCSHHHHHHSTTSCEE
T ss_pred CCC-hHHHH-HHHHhhcCCCCEEEEeCCC-CChHHHHHHHCCCCcEE
Confidence 663 33333 2344567889999988766 22345666666554443
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=97.60 E-value=7.4e-05 Score=79.28 Aligned_cols=89 Identities=11% Similarity=0.061 Sum_probs=62.7
Q ss_pred cEEEEEeCChhhHHHHHHHhh-CCCEEEEEC---CCCCCCCcc-cc---------C-C--------c-eecCCHHhhhcC
Q 007040 163 LVLGIVGRSASARALATRSLS-FKMSVLYFD---VPEGKGKVT-FP---------S-A--------A-RRMDTLNDLLAA 218 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lka-fG~~V~~~d---r~~~~~~~~-~~---------~-g--------~-~~~~sL~eLL~~ 218 (620)
++|+|||.|.||..+|..|.. .|++|.+|+ ++....... .. . + . ....++++++..
T Consensus 3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (404)
T 3c7a_A 3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAISG 82 (404)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHTT
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhCC
Confidence 579999999999999999987 599999999 542111110 00 0 1 1 134578888899
Q ss_pred CcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEc
Q 007040 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNT 253 (620)
Q Consensus 219 sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINv 253 (620)
+|+|++++|... ...++ ......+++++++|..
T Consensus 83 aD~Vilav~~~~-~~~v~-~~l~~~l~~~~ivv~~ 115 (404)
T 3c7a_A 83 ADVVILTVPAFA-HEGYF-QAMAPYVQDSALIVGL 115 (404)
T ss_dssp CSEEEECSCGGG-HHHHH-HHHTTTCCTTCEEEET
T ss_pred CCEEEEeCchHH-HHHHH-HHHHhhCCCCcEEEEc
Confidence 999999999653 44444 3344567889999985
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.58 E-value=3.4e-05 Score=70.06 Aligned_cols=92 Identities=11% Similarity=0.093 Sum_probs=62.4
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCcee----cCC---HHhh-hcCCcEEEEcccCChhhH
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR----MDT---LNDL-LAASDVISLHCAVTDETI 233 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~----~~s---L~eL-L~~sDvVil~lPlT~~T~ 233 (620)
..++.|+|+|.+|+.+|+.|...|++|+++|+++.........+... ..+ |.++ +..+|+|++++|....+.
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n~ 86 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAG 86 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHHHH
Confidence 34699999999999999999999999999999875433211222221 111 2222 568999999999776655
Q ss_pred hhcCHHHhhccCCCcEEEEcCC
Q 007040 234 QIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgR 255 (620)
.++ ..+..+.++..+|-..+
T Consensus 87 ~~~--~~a~~~~~~~~iiar~~ 106 (140)
T 3fwz_A 87 EIV--ASARAKNPDIEIIARAH 106 (140)
T ss_dssp HHH--HHHHHHCSSSEEEEEES
T ss_pred HHH--HHHHHHCCCCeEEEEEC
Confidence 443 34556666766665443
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00025 Score=65.47 Aligned_cols=101 Identities=10% Similarity=0.094 Sum_probs=74.5
Q ss_pred CcEEEEEeC----ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 162 GLVLGIVGR----SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 162 GktVGIIGl----G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
-++|+|||. |.+|..+++.|+..|++|+.+++... . . .|...+.+++++....|++++++|. +....++.
T Consensus 22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp~~~--~--i-~G~~~y~sl~~l~~~vDlvvi~vp~-~~~~~vv~ 95 (144)
T 2d59_A 22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYE--E--V-LGRKCYPSVLDIPDKIEVVDLFVKP-KLTMEYVE 95 (144)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCS--E--E-TTEECBSSGGGCSSCCSEEEECSCH-HHHHHHHH
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECCCCC--e--E-CCeeccCCHHHcCCCCCEEEEEeCH-HHHHHHHH
Confidence 578999999 79999999999999999887777641 1 2 4666677899998899999999996 55556653
Q ss_pred HHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
+..+ ...+++++..+- .++++.+.+++..+.
T Consensus 96 -~~~~-~gi~~i~~~~g~----~~~~l~~~a~~~Gi~ 126 (144)
T 2d59_A 96 -QAIK-KGAKVVWFQYNT----YNREASKKADEAGLI 126 (144)
T ss_dssp -HHHH-HTCSEEEECTTC----CCHHHHHHHHHTTCE
T ss_pred -HHHH-cCCCEEEECCCc----hHHHHHHHHHHcCCE
Confidence 3333 333466655432 377788888876654
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.54 E-value=8.9e-05 Score=65.52 Aligned_cols=91 Identities=10% Similarity=0.076 Sum_probs=58.9
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-cCCcee----cCCHHh---h-hcCCcEEEEcccCChhh
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF-PSAARR----MDTLND---L-LAASDVISLHCAVTDET 232 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~-~~g~~~----~~sL~e---L-L~~sDvVil~lPlT~~T 232 (620)
+++|+|+|+|.+|+.+|+.|...|++|+++|++........ ..+... ..+.+. . +..+|+|++++|....+
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~ 83 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVN 83 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCchHH
Confidence 57899999999999999999999999999998754322111 012211 112222 2 57899999999865333
Q ss_pred HhhcCHHHhhccCCCcEEEEcC
Q 007040 233 IQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 233 ~~lI~~~~L~~MK~gAiLINvg 254 (620)
. .-......++++.+++-+.
T Consensus 84 ~--~~~~~~~~~~~~~ii~~~~ 103 (140)
T 1lss_A 84 L--MSSLLAKSYGINKTIARIS 103 (140)
T ss_dssp H--HHHHHHHHTTCCCEEEECS
T ss_pred H--HHHHHHHHcCCCEEEEEec
Confidence 2 2223455577777666543
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00015 Score=75.03 Aligned_cols=105 Identities=17% Similarity=0.229 Sum_probs=68.7
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcc------------ccCCceecCCHHhhhcCCcEEEEcccC
Q 007040 162 GLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVT------------FPSAARRMDTLNDLLAASDVISLHCAV 228 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~------------~~~g~~~~~sL~eLL~~sDvVil~lPl 228 (620)
.++|+|||.|.||..+|..|...|+ +|+.||++....... ....+....++ +.++.||+|+++++.
T Consensus 4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg~ 82 (317)
T 2ewd_A 4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITASI 82 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCC
Confidence 4689999999999999999998898 999999986432210 01112233567 678999999999942
Q ss_pred C-----------hhhHhhcC--HHHhhccCCCcEEEEcCCChhhcHHHHHHH
Q 007040 229 T-----------DETIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCAVKQL 267 (620)
Q Consensus 229 T-----------~~T~~lI~--~~~L~~MK~gAiLINvgRG~vVDe~AL~~A 267 (620)
. +++..++. .+.+....|++++|+++-..-+....+.+.
T Consensus 83 p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp~~~~~~~~~~~ 134 (317)
T 2ewd_A 83 PGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLDVMVSHFQKV 134 (317)
T ss_dssp SSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHh
Confidence 1 12222211 122333457999999987655544455444
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=97.51 E-value=9.2e-05 Score=77.13 Aligned_cols=87 Identities=18% Similarity=0.259 Sum_probs=65.5
Q ss_pred cCcEEEEEeCChhhHHHHHHHhh-CC-CEEEEECCCCCCCCcccc------CCceecCCHHhhhcCCcEEEEcccCChhh
Q 007040 161 RGLVLGIVGRSASARALATRSLS-FK-MSVLYFDVPEGKGKVTFP------SAARRMDTLNDLLAASDVISLHCAVTDET 232 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lka-fG-~~V~~~dr~~~~~~~~~~------~g~~~~~sL~eLL~~sDvVil~lPlT~~T 232 (620)
..+++||||.|.+|+.+++.|.. ++ .+|.+|||+....+.... .... ..++++++ ++|+|++++|...
T Consensus 124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~-~~~~~e~v-~aDvVi~aTp~~~-- 199 (322)
T 1omo_A 124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISAS-VQPAEEAS-RCDVLVTTTPSRK-- 199 (322)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEE-ECCHHHHT-SSSEEEECCCCSS--
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEE-ECCHHHHh-CCCEEEEeeCCCC--
Confidence 45789999999999999999886 44 589999998754331111 1234 67899999 9999999999652
Q ss_pred HhhcCHHHhhccCCCcEEEEcCC
Q 007040 233 IQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 233 ~~lI~~~~L~~MK~gAiLINvgR 255 (620)
.++.. ..+++|+.++++|.
T Consensus 200 -pv~~~---~~l~~G~~V~~ig~ 218 (322)
T 1omo_A 200 -PVVKA---EWVEEGTHINAIGA 218 (322)
T ss_dssp -CCBCG---GGCCTTCEEEECSC
T ss_pred -ceecH---HHcCCCeEEEECCC
Confidence 45543 46889999999963
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.50 E-value=9.3e-05 Score=66.55 Aligned_cols=91 Identities=12% Similarity=0.059 Sum_probs=57.0
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCce--e--cCC---HHhh-hcCCcEEEEcccCChhh
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR--R--MDT---LNDL-LAASDVISLHCAVTDET 232 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~--~--~~s---L~eL-L~~sDvVil~lPlT~~T 232 (620)
.++++.|+|+|.+|+.+|+.|...|++|+++|+++.........+.. . ..+ +.++ +.++|+|++++|....
T Consensus 5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~~~- 83 (141)
T 3llv_A 5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDDEF- 83 (141)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCHHH-
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCHHH-
Confidence 45789999999999999999999999999999976432211111221 1 112 2222 4679999999994322
Q ss_pred HhhcCHHHhhccCCCcEEEEc
Q 007040 233 IQIINAECLQHIKPGAFLVNT 253 (620)
Q Consensus 233 ~~lI~~~~L~~MK~gAiLINv 253 (620)
.++-...+..+....+++-+
T Consensus 84 -n~~~~~~a~~~~~~~iia~~ 103 (141)
T 3llv_A 84 -NLKILKALRSVSDVYAIVRV 103 (141)
T ss_dssp -HHHHHHHHHHHCCCCEEEEE
T ss_pred -HHHHHHHHHHhCCceEEEEE
Confidence 33333444455534444433
|
| >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=6.5e-05 Score=80.77 Aligned_cols=84 Identities=13% Similarity=0.168 Sum_probs=69.1
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCC---EEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhc
Q 007040 161 RGLVLGIVGR-SASARALATRSLSFKM---SVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII 236 (620)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafG~---~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI 236 (620)
..-+|.|||. |..|...++.++++|+ .|.++|.+.... +.. ++ .+..+|+||.++......-.+|
T Consensus 213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~------g~~----~~-~i~~aDivIn~vlig~~aP~Lv 281 (394)
T 2qrj_A 213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSR------GGP----FD-EIPQADIFINCIYLSKPIAPFT 281 (394)
T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTT------CSC----CT-HHHHSSEEEECCCCCSSCCCSC
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeecccccc------CCc----hh-hHhhCCEEEECcCcCCCCCccc
Confidence 3567899999 9999999999999998 899999875221 111 23 4569999999999866666799
Q ss_pred CHHHhhcc-CCCcEEEEcCC
Q 007040 237 NAECLQHI-KPGAFLVNTGS 255 (620)
Q Consensus 237 ~~~~L~~M-K~gAiLINvgR 255 (620)
..+.++.| |||++|||++-
T Consensus 282 t~e~v~~m~k~gsVIVDVA~ 301 (394)
T 2qrj_A 282 NMEKLNNPNRRLRTVVDVSA 301 (394)
T ss_dssp CHHHHCCTTCCCCEEEETTC
T ss_pred CHHHHhcCcCCCeEEEEEec
Confidence 99999999 99999999963
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00024 Score=77.53 Aligned_cols=106 Identities=11% Similarity=0.022 Sum_probs=70.4
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-------cccc------------CC-ceecCCHHhhhcCCc
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-------VTFP------------SA-ARRMDTLNDLLAASD 220 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~-------~~~~------------~g-~~~~~sL~eLL~~sD 220 (620)
+-.+|+|||+|-+|..+|..+...|++|++||.++...+ ...+ .+ .....++++.++.||
T Consensus 20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~ad 99 (444)
T 3vtf_A 20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAATD 99 (444)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTSS
T ss_pred CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcCC
Confidence 345899999999999999999999999999998753211 0001 11 223567888899999
Q ss_pred EEEEcccCChh------hHhhcC--HHHhhcc---CCCcEEEEcCCChhhcHHHHHH
Q 007040 221 VISLHCAVTDE------TIQIIN--AECLQHI---KPGAFLVNTGSSQLLDDCAVKQ 266 (620)
Q Consensus 221 vVil~lPlT~~------T~~lI~--~~~L~~M---K~gAiLINvgRG~vVDe~AL~~ 266 (620)
++++|+|.-.. ...+.. ...-..| .+|.++|.-|.-.+=-.+.+..
T Consensus 100 ~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~ 156 (444)
T 3vtf_A 100 ATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVA 156 (444)
T ss_dssp EEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHH
T ss_pred ceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHH
Confidence 99999984211 112221 1222334 4688999988866644444433
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00013 Score=74.86 Aligned_cols=106 Identities=10% Similarity=0.090 Sum_probs=69.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEE-EEECCCCCCCCccccCCceecCCHHhhhc--CCcEEEEcccCChhhHhhcCH
Q 007040 163 LVLGIVGRSASARALATRSLSF-KMSV-LYFDVPEGKGKVTFPSAARRMDTLNDLLA--ASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-G~~V-~~~dr~~~~~~~~~~~g~~~~~sL~eLL~--~sDvVil~lPlT~~T~~lI~~ 238 (620)
.+|||||+|.||+.+++.+... ++++ .++|++.......... +..+.+++++++ ++|+|++++|......
T Consensus 11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~----- 84 (315)
T 3c1a_A 11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPG-CVIESDWRSVVSAPEVEAVIIATPPATHAE----- 84 (315)
T ss_dssp EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTT-CEEESSTHHHHTCTTCCEEEEESCGGGHHH-----
T ss_pred ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhh-CcccCCHHHHhhCCCCCEEEEeCChHHHHH-----
Confidence 5799999999999999999876 6775 4888876433222112 445678999996 7999999999543211
Q ss_pred HHhhccCCCc-EEEEc-CCChhhcHHHHHHHHHcCCcc
Q 007040 239 ECLQHIKPGA-FLVNT-GSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 239 ~~L~~MK~gA-iLINv-gRG~vVDe~AL~~AL~~G~I~ 274 (620)
-....++.|. +++.- .--.+-+..+|.++.++..+.
T Consensus 85 ~~~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~~ 122 (315)
T 3c1a_A 85 ITLAAIASGKAVLVEKPLTLDLAEAEAVAAAAKATGVM 122 (315)
T ss_dssp HHHHHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCCE
Confidence 1223355564 56552 223445566788777655443
|
| >4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00044 Score=71.88 Aligned_cols=77 Identities=26% Similarity=0.352 Sum_probs=66.0
Q ss_pred eecCcEEEEEeCChh-hHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSAS-ARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~I-G~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||.+.| |+++|.+|...|++|+.+.... .+|.+.+++||+|+.++.-. ++|.
T Consensus 176 ~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~T--------------~dl~~~~~~ADIvV~A~G~p----~~i~ 237 (303)
T 4b4u_A 176 EIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSRT--------------QNLPELVKQADIIVGAVGKA----ELIQ 237 (303)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SSHHHHHHTCSEEEECSCST----TCBC
T ss_pred CCCCCEEEEEeccccccchHHHHHHhcCCEEEEecCCC--------------CCHHHHhhcCCeEEeccCCC----Cccc
Confidence 589999999999876 9999999999999999987543 37899999999999998743 5787
Q ss_pred HHHhhccCCCcEEEEcCCC
Q 007040 238 AECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG 256 (620)
.+ ++|+|+++||+|--
T Consensus 238 ~d---~vk~GavVIDVGin 253 (303)
T 4b4u_A 238 KD---WIKQGAVVVDAGFH 253 (303)
T ss_dssp GG---GSCTTCEEEECCCB
T ss_pred cc---cccCCCEEEEecee
Confidence 65 57899999999853
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=97.38 E-value=7.5e-05 Score=76.70 Aligned_cols=96 Identities=13% Similarity=0.121 Sum_probs=65.2
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcc---ccC-CceecCCHHhhhcCCcEEEEcccCChhhH
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVT---FPS-AARRMDTLNDLLAASDVISLHCAVTDETI 233 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~---~~~-g~~~~~sL~eLL~~sDvVil~lPlT~~T~ 233 (620)
.+.|+++.|+|.|.+|++++..|...|+ +|++++|+....... +.. +.....+++++...+|+||+++|......
T Consensus 123 ~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~l~~~aDiIInaTp~gm~~~ 202 (281)
T 3o8q_A 123 LLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSASLDGE 202 (281)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCSCEEEEEECSCCCC---
T ss_pred CccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHHhcCCCCEEEEcCcCCCCCC
Confidence 3689999999999999999999999997 999999986432211 100 11122356666688999999999763321
Q ss_pred -hhcCHHHhhccCCCcEEEEcCCCh
Q 007040 234 -QIINAECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 234 -~lI~~~~L~~MK~gAiLINvgRG~ 257 (620)
..+.. ..++++++++++.-.+
T Consensus 203 ~~~l~~---~~l~~~~~V~DlvY~P 224 (281)
T 3o8q_A 203 LPAIDP---VIFSSRSVCYDMMYGK 224 (281)
T ss_dssp -CSCCG---GGEEEEEEEEESCCCS
T ss_pred CCCCCH---HHhCcCCEEEEecCCC
Confidence 12332 3456677777776544
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=7.3e-05 Score=75.81 Aligned_cols=71 Identities=8% Similarity=0.040 Sum_probs=50.3
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc---cC-CceecCCHHhhhc-CCcEEEEcccCCh
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF---PS-AARRMDTLNDLLA-ASDVISLHCAVTD 230 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~---~~-g~~~~~sL~eLL~-~sDvVil~lPlT~ 230 (620)
+.+++++|+|.|.+|+++|..|...|.+|++++|+........ .. +.....+++++.. .+|+|++++|...
T Consensus 117 ~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivIn~t~~~~ 192 (272)
T 1p77_A 117 RPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGL 192 (272)
T ss_dssp CTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC--
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEEeeHHHhccCCCCEEEECCCCCC
Confidence 6789999999999999999999999999999999864322111 00 0011223444434 8999999999763
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00034 Score=71.81 Aligned_cols=107 Identities=11% Similarity=0.089 Sum_probs=72.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCC--------------ceecCCHHhhhcCCcEEEEcccC
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSA--------------ARRMDTLNDLLAASDVISLHCAV 228 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g--------------~~~~~sL~eLL~~sDvVil~lPl 228 (620)
++|+|||.|.||..+|..|...|.+|.+|+|... +.....| .....++++ +..+|+|++++|.
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~--~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~D~vilavk~ 79 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRDY--EAIAGNGLKVFSINGDFTLPHVKGYRAPEE-IGPMDLVLVGLKT 79 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTTH--HHHHHTCEEEEETTCCEEESCCCEESCHHH-HCCCSEEEECCCG
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCcH--HHHHhCCCEEEcCCCeEEEeeceeecCHHH-cCCCCEEEEecCC
Confidence 5799999999999999999999999999998751 1000111 111245554 6789999999995
Q ss_pred ChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcce
Q 007040 229 TDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAG 275 (620)
Q Consensus 229 T~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~G 275 (620)
.. +..++ ...-..+++++++|.+.-| +-.++.|.+.+-..++.+
T Consensus 80 ~~-~~~~l-~~l~~~l~~~~~iv~l~nG-i~~~~~l~~~~~~~~v~~ 123 (312)
T 3hn2_A 80 FA-NSRYE-ELIRPLVEEGTQILTLQNG-LGNEEALATLFGAERIIG 123 (312)
T ss_dssp GG-GGGHH-HHHGGGCCTTCEEEECCSS-SSHHHHHHHHTCGGGEEE
T ss_pred CC-cHHHH-HHHHhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEE
Confidence 53 33333 2344567889999998776 222455666665545443
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00023 Score=77.51 Aligned_cols=96 Identities=15% Similarity=0.117 Sum_probs=73.1
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC------CCCccccCCceecCCHHhhhcCCcEEEEcccCChh
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG------KGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDE 231 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~------~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~ 231 (620)
.-|.|++|+|||+|.=|.+=|..|+--|++|++--|... .-..+..+|... .+..|+.+.||+|.+.+|...+
T Consensus 33 ~~lkgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~v-~~~~eA~~~ADvV~~L~PD~~q 111 (491)
T 3ulk_A 33 SYLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQADLVINLTPDKQH 111 (491)
T ss_dssp GGGTTSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCEE-EEHHHHGGGCSEEEECSCGGGH
T ss_pred HHHcCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCEe-cCHHHHHHhCCEEEEeCChhhH
Confidence 358999999999999999999999999999988766321 111223344443 4799999999999999997543
Q ss_pred hHhhcCHHHhhccCCCcEEEEcCCCh
Q 007040 232 TIQIINAECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 232 T~~lI~~~~L~~MK~gAiLINvgRG~ 257 (620)
. .++ .+....||+|+.|. .+.|-
T Consensus 112 ~-~vy-~~I~p~lk~G~~L~-faHGF 134 (491)
T 3ulk_A 112 S-DVV-RTVQPLMKDGAALG-YSHGF 134 (491)
T ss_dssp H-HHH-HHHGGGSCTTCEEE-ESSCH
T ss_pred H-HHH-HHHHhhCCCCCEEE-ecCcc
Confidence 3 344 46889999999988 45664
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00047 Score=70.65 Aligned_cols=107 Identities=17% Similarity=0.170 Sum_probs=70.8
Q ss_pred cEEEEEeCChhhHH-HHHHHhhC-CCEEE-EECCCCCCCCccc-cCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 163 LVLGIVGRSASARA-LATRSLSF-KMSVL-YFDVPEGKGKVTF-PSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 163 ktVGIIGlG~IG~~-vA~~Lkaf-G~~V~-~~dr~~~~~~~~~-~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
.+|||||+|.||+. +++.+... +++|. ++|++........ ..++...++++++..++|+|++++|.......
T Consensus 6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~~h~~~---- 81 (319)
T 1tlt_A 6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDV---- 81 (319)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHHH----
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCchhHHHH----
Confidence 57999999999997 88888764 78876 8898875543111 11333456788776789999999996533221
Q ss_pred HHhhccCCCc-EEEEc-CCChhhcHHHHHHHHHcCCcc
Q 007040 239 ECLQHIKPGA-FLVNT-GSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 239 ~~L~~MK~gA-iLINv-gRG~vVDe~AL~~AL~~G~I~ 274 (620)
....++.|. +++.- .-..+-+.++|.++.++..+.
T Consensus 82 -~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~ 118 (319)
T 1tlt_A 82 -VSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLT 118 (319)
T ss_dssp -HHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCC
T ss_pred -HHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 223355565 66652 233455667788888776654
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00026 Score=71.67 Aligned_cols=94 Identities=17% Similarity=0.219 Sum_probs=63.1
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc---ccC-CceecCCHHhhh-cCCcEEEEcccCChhhHh
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT---FPS-AARRMDTLNDLL-AASDVISLHCAVTDETIQ 234 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~---~~~-g~~~~~sL~eLL-~~sDvVil~lPlT~~T~~ 234 (620)
+.|++++|+|.|.||+++|..|...|.+|++++|+....... +.. +.....+++++. ..+|+|++++|..... .
T Consensus 117 l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~~~-~ 195 (271)
T 1nyt_A 117 RPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISG-D 195 (271)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGGT-C
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCCCC-C
Confidence 578999999999999999999999999999999986432211 100 011122344443 5899999999976431 1
Q ss_pred h--cCHHHhhccCCCcEEEEcCCCh
Q 007040 235 I--INAECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 235 l--I~~~~L~~MK~gAiLINvgRG~ 257 (620)
+ +.. ..++++.+++|+.-..
T Consensus 196 ~~~i~~---~~l~~~~~v~D~~y~p 217 (271)
T 1nyt_A 196 IPAIPS---SLIHPGIYCYDMFYQK 217 (271)
T ss_dssp CCCCCG---GGCCTTCEEEESCCCS
T ss_pred CCCCCH---HHcCCCCEEEEeccCC
Confidence 1 222 2356777888877654
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00026 Score=75.98 Aligned_cols=149 Identities=12% Similarity=0.166 Sum_probs=97.6
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCC----CCCC----C---ccccC---CceecCCHHhhhcCCcEEE
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVP----EGKG----K---VTFPS---AARRMDTLNDLLAASDVIS 223 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~----~~~~----~---~~~~~---g~~~~~sL~eLL~~sDvVi 223 (620)
.+.+.+|.|+|.|.+|..+|+.|.+.|. +|+.+|++ .... . ..+.. ......+|.+++..+|+++
T Consensus 189 ~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADVlI 268 (388)
T 1vl6_A 189 KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFI 268 (388)
T ss_dssp CTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEE
T ss_pred CCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCEEE
Confidence 4788999999999999999999999999 89999998 3221 0 00110 1112457999999999998
Q ss_pred EcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCC-cceeEeecCCCCCCCCccccCCCcEEEcCC
Q 007040 224 LHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGT-LAGCALDGAEGPQWMEAWVREMPNVLILPR 302 (620)
Q Consensus 224 l~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~-I~GAaLDV~E~P~~~~spL~~~pNVIlTPH 302 (620)
-+.. -++|.++.++.|+++++++.+++... |..=.++.+.|. |.+-+ -...|- +..|+++=|=
T Consensus 269 G~Sa-----p~l~t~emVk~Ma~~pIIfalSNPt~--E~~p~~a~~~g~~i~atG--r~~~p~-------Q~NN~~~FPg 332 (388)
T 1vl6_A 269 GVSR-----GNILKPEWIKKMSRKPVIFALANPVP--EIDPELAREAGAFIVATG--RSDHPN-------QVNNLLAFPG 332 (388)
T ss_dssp ECSC-----SSCSCHHHHTTSCSSCEEEECCSSSC--SSCHHHHHHTTCSEEEES--CTTSSS-------BCCGGGTHHH
T ss_pred EeCC-----CCccCHHHHHhcCCCCEEEEcCCCCC--CCCHHHHHHhcCeEEEeC--CCCCCC-------cCCceeEcch
Confidence 7742 28999999999999999999998543 222222333343 22111 111121 4557776664
Q ss_pred CC------CCcHHHHHHHHHHHHHHHHHH
Q 007040 303 SA------DYSEEVWMEIRDKAISVLQTF 325 (620)
Q Consensus 303 iA------g~T~ea~~~~~~~a~enL~~~ 325 (620)
++ ..+ ..++|.-.+++.|..+
T Consensus 333 i~~Gal~~~a~--i~~~m~~aAa~alA~~ 359 (388)
T 1vl6_A 333 IMKGAVEKRSK--ITKNMLLSAVEAIARS 359 (388)
T ss_dssp HHHHHHHHCSC--CCHHHHHHHHHHHHHT
T ss_pred HhHHHHhcCCc--cCHHHHHHHHHHHHhh
Confidence 21 222 3355666667766664
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00046 Score=71.45 Aligned_cols=69 Identities=12% Similarity=0.131 Sum_probs=53.3
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEEE-EECCCCCCCCc-cccCCceecCCHHhhhc--CCcEEEEcccCChh
Q 007040 163 LVLGIVGRSASARALATRSLSF-KMSVL-YFDVPEGKGKV-TFPSAARRMDTLNDLLA--ASDVISLHCAVTDE 231 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-G~~V~-~~dr~~~~~~~-~~~~g~~~~~sL~eLL~--~sDvVil~lPlT~~ 231 (620)
.+|||||+|.||+.+++.+... +++|+ ++|++...... ....+...+.++++++. +.|+|++++|....
T Consensus 5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h 78 (344)
T 3euw_A 5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTSTH 78 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGGGH
T ss_pred eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCchhh
Confidence 4799999999999999999876 78877 68887644321 11224566789999998 89999999996543
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00026 Score=72.16 Aligned_cols=107 Identities=16% Similarity=0.169 Sum_probs=70.3
Q ss_pred CcEEEEEeCChhhHH-HHHHHhh-CCCEEE-EECCCCCCCCccc-cCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 162 GLVLGIVGRSASARA-LATRSLS-FKMSVL-YFDVPEGKGKVTF-PSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 162 GktVGIIGlG~IG~~-vA~~Lka-fG~~V~-~~dr~~~~~~~~~-~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
-.+|||||+|.||+. +++.+.. -++++. ++|+++....... ..++..+.++++++.+.|+|++++|........
T Consensus 6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~~~h~~~~-- 83 (308)
T 3uuw_A 6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSSTETHYEII-- 83 (308)
T ss_dssp CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCGGGHHHHH--
T ss_pred cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCcHhHHHHH--
Confidence 357999999999996 8888876 478877 6898764432111 123444689999999999999999965332222
Q ss_pred HHHhhccCCCc-EEEE-cCCChhhcHHHHHHHHHcCCc
Q 007040 238 AECLQHIKPGA-FLVN-TGSSQLLDDCAVKQLLIDGTL 273 (620)
Q Consensus 238 ~~~L~~MK~gA-iLIN-vgRG~vVDe~AL~~AL~~G~I 273 (620)
...++.|. +|+. -.--.+-+.++|.++.++..+
T Consensus 84 ---~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~ 118 (308)
T 3uuw_A 84 ---KILLNLGVHVYVDKPLASTVSQGEELIELSTKKNL 118 (308)
T ss_dssp ---HHHHHTTCEEEECSSSSSSHHHHHHHHHHHHHHTC
T ss_pred ---HHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHcCC
Confidence 22233343 4443 233445566778887776544
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00012 Score=74.75 Aligned_cols=93 Identities=11% Similarity=0.004 Sum_probs=64.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCc---eecCCHHhhh-cCCcEEEEcccCChhhHhhcCH
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA---RRMDTLNDLL-AASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~---~~~~sL~eLL-~~sDvVil~lPlT~~T~~lI~~ 238 (620)
++|+|||.|.||..+|..|...|.+|.+|+|+..........+. ....+..+.+ ..+|+|++++|.. .+..++.
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk~~-~~~~~l~- 80 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKTH-QLDAVIP- 80 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSCGG-GHHHHGG-
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCCcc-CHHHHHH-
Confidence 57999999999999999999889999999998532221111121 1111333443 7899999999965 4455543
Q ss_pred HHhhccCCCcEEEEcCCCh
Q 007040 239 ECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 239 ~~L~~MK~gAiLINvgRG~ 257 (620)
..-..+++++++|.+.-|=
T Consensus 81 ~l~~~l~~~~~iv~~~nGi 99 (294)
T 3g17_A 81 HLTYLAHEDTLIILAQNGY 99 (294)
T ss_dssp GHHHHEEEEEEEEECCSSC
T ss_pred HHHHhhCCCCEEEEeccCc
Confidence 2334567888999987763
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00065 Score=71.03 Aligned_cols=95 Identities=13% Similarity=0.211 Sum_probs=64.7
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCc------------cccCCceecCCHHhhhcCCcEEEEcc--
Q 007040 162 GLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKV------------TFPSAARRMDTLNDLLAASDVISLHC-- 226 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~------------~~~~g~~~~~sL~eLL~~sDvVil~l-- 226 (620)
.++|+|||.|.+|..+|..|...|+ +|..||+.....+. .....+....++++.++.||+|++++
T Consensus 9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~g~ 88 (331)
T 1pzg_A 9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAGL 88 (331)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEccCC
Confidence 4689999999999999999998888 99999998643221 01112233468888899999999999
Q ss_pred cCChhh------Hh--------hcC--HHHhhccCCCcEEEEcCCC
Q 007040 227 AVTDET------IQ--------IIN--AECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 227 PlT~~T------~~--------lI~--~~~L~~MK~gAiLINvgRG 256 (620)
|..+.- +- ++- .+.+....|++++|+++-.
T Consensus 89 p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNP 134 (331)
T 1pzg_A 89 TKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNP 134 (331)
T ss_dssp SSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred CCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCc
Confidence 654321 11 110 1233344589999988653
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00045 Score=63.20 Aligned_cols=93 Identities=10% Similarity=-0.060 Sum_probs=59.8
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCC----CCccccCCce-------ecCCHHhh-hcCCcEEEEcccCC
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGK----GKVTFPSAAR-------RMDTLNDL-LAASDVISLHCAVT 229 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~----~~~~~~~g~~-------~~~sL~eL-L~~sDvVil~lPlT 229 (620)
.+++.|+|+|.+|+.+|+.|...|++|+++|+.... .......+.. ..+.|.++ +..+|+|+++++..
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d 82 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDND 82 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCH
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCCh
Confidence 457899999999999999999999999999987411 1101111111 11235554 78899999999865
Q ss_pred hhhHhhcCHHHhhccCCCcEEEEcCCC
Q 007040 230 DETIQIINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 230 ~~T~~lI~~~~L~~MK~gAiLINvgRG 256 (620)
..+ +.-......+.+...+|...+.
T Consensus 83 ~~n--~~~~~~a~~~~~~~~ii~~~~~ 107 (153)
T 1id1_A 83 ADN--AFVVLSAKDMSSDVKTVLAVSD 107 (153)
T ss_dssp HHH--HHHHHHHHHHTSSSCEEEECSS
T ss_pred HHH--HHHHHHHHHHCCCCEEEEEECC
Confidence 433 3334445556455555554333
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0012 Score=68.10 Aligned_cols=68 Identities=19% Similarity=0.133 Sum_probs=50.9
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEEE-EECCCCCCCCccc-cCCce-ecCCHHhhhc--CCcEEEEcccCCh
Q 007040 163 LVLGIVGRSASARALATRSLSF-KMSVL-YFDVPEGKGKVTF-PSAAR-RMDTLNDLLA--ASDVISLHCAVTD 230 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-G~~V~-~~dr~~~~~~~~~-~~g~~-~~~sL~eLL~--~sDvVil~lPlT~ 230 (620)
.+|||||+|.||+.+++.++.. +++|. ++|++........ ..++. .+.+++++++ +.|+|++++|...
T Consensus 6 ~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~ 79 (329)
T 3evn_A 6 VRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQD 79 (329)
T ss_dssp EEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGGG
T ss_pred eEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHH
Confidence 5799999999999999998865 56655 6788875544222 22332 5689999998 7899999999653
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00043 Score=71.28 Aligned_cols=68 Identities=10% Similarity=0.140 Sum_probs=52.3
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEEE-EECCCCCCCCcc-ccCCceecCCHHhhhc--CCcEEEEcccCChh
Q 007040 163 LVLGIVGRSASARALATRSLSF-KMSVL-YFDVPEGKGKVT-FPSAARRMDTLNDLLA--ASDVISLHCAVTDE 231 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-G~~V~-~~dr~~~~~~~~-~~~g~~~~~sL~eLL~--~sDvVil~lPlT~~ 231 (620)
.+|||||+|.||+.+++.+... +++|. ++|+++...... ...++. +.+++++++ +.|+|++++|....
T Consensus 4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~D~V~i~tp~~~h 76 (331)
T 4hkt_A 4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCE-VRTIDAIEAAADIDAVVICTPTDTH 76 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCE-ECCHHHHHHCTTCCEEEECSCGGGH
T ss_pred eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCC-cCCHHHHhcCCCCCEEEEeCCchhH
Confidence 4799999999999999999876 78877 688876433211 112445 789999998 79999999996543
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00044 Score=71.98 Aligned_cols=69 Identities=13% Similarity=0.139 Sum_probs=52.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEEE-EECCCCCCCCcc-ccCCceecCCHHhhh--cCCcEEEEcccCChh
Q 007040 163 LVLGIVGRSASARALATRSLSF-KMSVL-YFDVPEGKGKVT-FPSAARRMDTLNDLL--AASDVISLHCAVTDE 231 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-G~~V~-~~dr~~~~~~~~-~~~g~~~~~sL~eLL--~~sDvVil~lPlT~~ 231 (620)
.+|||||+|.||+.+++.++.. +++|. ++|++....... ...++..+.++++++ .+.|+|++++|....
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h 79 (354)
T 3db2_A 6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDKH 79 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTSH
T ss_pred ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChHHH
Confidence 5799999999999999999987 88865 778876433211 112444578999999 569999999997643
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00056 Score=70.90 Aligned_cols=96 Identities=17% Similarity=0.217 Sum_probs=61.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCCccc---c-------CCceecCCHHhhhcCCcEEEEcccCCh
Q 007040 163 LVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGKVTF---P-------SAARRMDTLNDLLAASDVISLHCAVTD 230 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~--~V~~~dr~~~~~~~~~---~-------~g~~~~~sL~eLL~~sDvVil~lPlT~ 230 (620)
++|+|||.|.||..+|..|...|+ +|..||++........ . .......+. +.+..||+|++++|...
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~-~~~~~aDvViiav~~~~ 79 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDY-ADLKGSDVVIVAAGVPQ 79 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCG-GGGTTCSEEEECCCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCCH-HHhCCCCEEEEccCCCC
Confidence 479999999999999999998888 9999999753222100 0 001112343 56789999999999643
Q ss_pred h-----------hHhhcC--HHHhhccCCCcEEEEcCCChhh
Q 007040 231 E-----------TIQIIN--AECLQHIKPGAFLVNTGSSQLL 259 (620)
Q Consensus 231 ~-----------T~~lI~--~~~L~~MK~gAiLINvgRG~vV 259 (620)
. |..++. ...+....|++++|+++-+--+
T Consensus 80 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~ 121 (319)
T 1a5z_A 80 KPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDV 121 (319)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcHHH
Confidence 1 011111 1123333578999998665433
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0006 Score=70.08 Aligned_cols=67 Identities=21% Similarity=0.269 Sum_probs=49.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC--CEEEEECCCCCCCCcc---cc-------CCcee-cCCHHhhhcCCcEEEEcccCC
Q 007040 163 LVLGIVGRSASARALATRSLSFK--MSVLYFDVPEGKGKVT---FP-------SAARR-MDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG--~~V~~~dr~~~~~~~~---~~-------~g~~~-~~sL~eLL~~sDvVil~lPlT 229 (620)
++|+|||.|.||..+|..|...| .+|..||++....... .. ..... ..++ +.+..||+|++++|..
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~~ 80 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGNI 80 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSCG
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCCc
Confidence 47999999999999999998778 7999999975322100 00 01121 3566 6788999999999964
Q ss_pred h
Q 007040 230 D 230 (620)
Q Consensus 230 ~ 230 (620)
.
T Consensus 81 ~ 81 (309)
T 1hyh_A 81 K 81 (309)
T ss_dssp G
T ss_pred c
Confidence 3
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00047 Score=71.16 Aligned_cols=107 Identities=7% Similarity=0.040 Sum_probs=67.5
Q ss_pred cEEEEEeCChhhHHHHHHHh-h-CCCEE-EEECCCCCCCCcc-ccCCc-eecCCHHhhhc--CCcEEEEcccCChhhHhh
Q 007040 163 LVLGIVGRSASARALATRSL-S-FKMSV-LYFDVPEGKGKVT-FPSAA-RRMDTLNDLLA--ASDVISLHCAVTDETIQI 235 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lk-a-fG~~V-~~~dr~~~~~~~~-~~~g~-~~~~sL~eLL~--~sDvVil~lPlT~~T~~l 235 (620)
.+|||||+|.||+.+++.++ . -|++| .++|++....... ...+. ..+.++++++. .+|+|++++|......
T Consensus 9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~-- 86 (346)
T 3cea_A 9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFHPE-- 86 (346)
T ss_dssp EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGHHH--
T ss_pred ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhHHH--
Confidence 57999999999999999988 5 47875 5678876433211 11233 44678999997 6999999999543221
Q ss_pred cCHHHhhccCCCc-EEEEc-CCChhhcHHHHHHHHHcC-Ccc
Q 007040 236 INAECLQHIKPGA-FLVNT-GSSQLLDDCAVKQLLIDG-TLA 274 (620)
Q Consensus 236 I~~~~L~~MK~gA-iLINv-gRG~vVDe~AL~~AL~~G-~I~ 274 (620)
-.+..++.|. +++.- .-..+-+.++|.++.+.. .+.
T Consensus 87 ---~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~ 125 (346)
T 3cea_A 87 ---MTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQI 125 (346)
T ss_dssp ---HHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSC
T ss_pred ---HHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCe
Confidence 1223455565 44431 122334445577777665 443
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0014 Score=67.99 Aligned_cols=101 Identities=13% Similarity=0.098 Sum_probs=66.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEE-EEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHH
Q 007040 163 LVLGIVGRSASARALATRSLSF-KMSV-LYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-G~~V-~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~ 240 (620)
.+|||||+|+||+.+++.+... ++++ .++|++... . ...++....++++++.++|+|++++|..... ...
T Consensus 4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~-~--~~~gv~~~~d~~~ll~~~DvViiatp~~~h~-----~~~ 75 (320)
T 1f06_A 4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL-D--TKTPVFDVADVDKHADDVDVLFLCMGSATDI-----PEQ 75 (320)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC-S--SSSCEEEGGGGGGTTTTCSEEEECSCTTTHH-----HHH
T ss_pred CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH-h--hcCCCceeCCHHHHhcCCCEEEEcCCcHHHH-----HHH
Confidence 4699999999999999999876 6775 477887544 2 1134555678888888899999999865322 223
Q ss_pred hhccCCCcEEEEcCCChh-h-cH-HHHHHHHHcC
Q 007040 241 LQHIKPGAFLVNTGSSQL-L-DD-CAVKQLLIDG 271 (620)
Q Consensus 241 L~~MK~gAiLINvgRG~v-V-De-~AL~~AL~~G 271 (620)
...++.|.-+|...-..+ + +. +.|.++.+.+
T Consensus 76 ~~al~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~ 109 (320)
T 1f06_A 76 APKFAQFACTVDTYDNHRDIPRHRQVMNEAATAA 109 (320)
T ss_dssp HHHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCEEEECCCCcCCHHHHHHHHHHHHHhC
Confidence 455666776665443332 2 22 3455555543
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00046 Score=70.83 Aligned_cols=70 Identities=14% Similarity=0.142 Sum_probs=54.3
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcc---cc-----CCcee--cCCHHhhhcCCcEEEEcccC
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVT---FP-----SAARR--MDTLNDLLAASDVISLHCAV 228 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~---~~-----~g~~~--~~sL~eLL~~sDvVil~lPl 228 (620)
+.|+++.|+|.|.+|++++..|...|+ +|++++|+....... +. ..+.. .+++.+.+.++|+||+++|.
T Consensus 125 l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaTp~ 204 (283)
T 3jyo_A 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPM 204 (283)
T ss_dssp CCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECSST
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECCCC
Confidence 689999999999999999999999999 799999986433211 00 01112 23788889999999999996
Q ss_pred C
Q 007040 229 T 229 (620)
Q Consensus 229 T 229 (620)
.
T Consensus 205 G 205 (283)
T 3jyo_A 205 G 205 (283)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00035 Score=71.89 Aligned_cols=89 Identities=11% Similarity=0.109 Sum_probs=59.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceec---------CCH-HhhhcCCcEEEEcccCChhh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRM---------DTL-NDLLAASDVISLHCAVTDET 232 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~---------~sL-~eLL~~sDvVil~lPlT~~T 232 (620)
++|+|||.|.||..+|..|. .|.+|.+++|+....+.....|.... .+. .+....+|+|++++|.. .+
T Consensus 3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~-~~ 80 (307)
T 3ego_A 3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTVKQH-QL 80 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECCCGG-GH
T ss_pred CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEeCHH-HH
Confidence 67999999999999999999 89999999997632211111111110 001 24567899999999954 34
Q ss_pred HhhcCHHHhhccCCCcEEEEcCCC
Q 007040 233 IQIINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 233 ~~lI~~~~L~~MK~gAiLINvgRG 256 (620)
..++ +.++.+.+++ +|.+.-|
T Consensus 81 ~~~l--~~l~~~~~~~-ivs~~nG 101 (307)
T 3ego_A 81 QSVF--SSLERIGKTN-ILFLQNG 101 (307)
T ss_dssp HHHH--HHTTSSCCCE-EEECCSS
T ss_pred HHHH--HHhhcCCCCe-EEEecCC
Confidence 4443 2344455666 8887666
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0011 Score=68.50 Aligned_cols=92 Identities=13% Similarity=0.236 Sum_probs=60.1
Q ss_pred cEEEEEeCChhhHHHHHHHhh--CCCEEEEECCCCCCCCcc---ccC---------CceecCCHHhhhcCCcEEEEcccC
Q 007040 163 LVLGIVGRSASARALATRSLS--FKMSVLYFDVPEGKGKVT---FPS---------AARRMDTLNDLLAASDVISLHCAV 228 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lka--fG~~V~~~dr~~~~~~~~---~~~---------g~~~~~sL~eLL~~sDvVil~lPl 228 (620)
++|+|||.|.+|..+|..|.. +|.+|..||+........ ... .+....++++ +..||+|++++|.
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~~ 79 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAGL 79 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCSC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCCC
Confidence 479999999999999999986 589999999986422210 001 1223356766 8999999999984
Q ss_pred Chh----hH-------hhcC--HHHhhccCCCcEEEEcCC
Q 007040 229 TDE----TI-------QIIN--AECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 229 T~~----T~-------~lI~--~~~L~~MK~gAiLINvgR 255 (620)
... -. .++. .+.+....|++++|+++-
T Consensus 80 p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tN 119 (310)
T 1guz_A 80 PRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN 119 (310)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 311 01 1110 112333357889988854
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.001 Score=68.50 Aligned_cols=101 Identities=12% Similarity=0.070 Sum_probs=62.4
Q ss_pred cEEEEEeCChhhHHHHHHHhh-CCCEEE-EECCCCCCCCccccCCc--eecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 163 LVLGIVGRSASARALATRSLS-FKMSVL-YFDVPEGKGKVTFPSAA--RRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lka-fG~~V~-~~dr~~~~~~~~~~~g~--~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
.+|||||+|+||+.+++.++. -+++|. ++|+++..... .++ ...+++.++ .++|+|++++|..... .
T Consensus 10 irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~---~g~~~~~~~~l~~~-~~~DvViiatp~~~h~-----~ 80 (304)
T 3bio_A 10 IRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF---ELQPFRVVSDIEQL-ESVDVALVCSPSREVE-----R 80 (304)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC----------CCTTSCEESSGGGS-SSCCEEEECSCHHHHH-----H
T ss_pred CEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH---cCCCcCCHHHHHhC-CCCCEEEECCCchhhH-----H
Confidence 579999999999999999986 478887 68988754332 222 224556555 7899999999944222 2
Q ss_pred HHhhccCCCcEEEEcCC--C-hhhcHHHHHHHHHcCC
Q 007040 239 ECLQHIKPGAFLVNTGS--S-QLLDDCAVKQLLIDGT 272 (620)
Q Consensus 239 ~~L~~MK~gAiLINvgR--G-~vVDe~AL~~AL~~G~ 272 (620)
-....++.|.-+|...= + .+.+...|.++.++..
T Consensus 81 ~~~~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g 117 (304)
T 3bio_A 81 TALEILKKGICTADSFDIHDGILALRRSLGDAAGKSG 117 (304)
T ss_dssp HHHHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCC
Confidence 22345666777776531 2 2334455676666543
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00035 Score=71.70 Aligned_cols=105 Identities=14% Similarity=0.181 Sum_probs=64.8
Q ss_pred EEEEEeCChhhHHH-HHHHhhCCCEEE-EECCCCCCCCcc-ccCCc-eecCCHHhhhc--CCcEEEEcccCChhhHhhcC
Q 007040 164 VLGIVGRSASARAL-ATRSLSFKMSVL-YFDVPEGKGKVT-FPSAA-RRMDTLNDLLA--ASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 164 tVGIIGlG~IG~~v-A~~LkafG~~V~-~~dr~~~~~~~~-~~~g~-~~~~sL~eLL~--~sDvVil~lPlT~~T~~lI~ 237 (620)
+|||||+|.||+.+ ++.+...+++|+ ++|++....... ...+. ..+.+++++++ ++|+|++++|......
T Consensus 2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~---- 77 (332)
T 2glx_A 2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELHRE---- 77 (332)
T ss_dssp EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGGHHH----
T ss_pred eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChhHhHH----
Confidence 69999999999998 777766788876 678876433211 11233 24578999997 4999999999543211
Q ss_pred HHHhhccCCCc-EEEEc-CCChhhcHHHHHHHHHcCCc
Q 007040 238 AECLQHIKPGA-FLVNT-GSSQLLDDCAVKQLLIDGTL 273 (620)
Q Consensus 238 ~~~L~~MK~gA-iLINv-gRG~vVDe~AL~~AL~~G~I 273 (620)
-....++.|. +++.- .-..+-+..+|.++.++..+
T Consensus 78 -~~~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~ 114 (332)
T 2glx_A 78 -QTLAAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGV 114 (332)
T ss_dssp -HHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTC
T ss_pred -HHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCC
Confidence 1223344554 44432 12234444556666655443
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00054 Score=69.97 Aligned_cols=95 Identities=11% Similarity=0.054 Sum_probs=61.2
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcc---ccCCceecCCHHhhh-cCCcEEEEcccCChhhH
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVT---FPSAARRMDTLNDLL-AASDVISLHCAVTDETI 233 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~---~~~g~~~~~sL~eLL-~~sDvVil~lPlT~~T~ 233 (620)
.+.|+++.|+|.|.+|++++..|...|+ +|++++|+....... +..+.....+++++- ..+|+||+++|..-...
T Consensus 117 ~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~l~~~~~DivInaTp~gm~~~ 196 (272)
T 3pwz_A 117 PLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEALEGQSFDIVVNATSASLTAD 196 (272)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGGGTTCCCSEEEECSSGGGGTC
T ss_pred CccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHHhcccCCCEEEECCCCCCCCC
Confidence 3689999999999999999999999996 999999986432211 110001122444443 78999999999653211
Q ss_pred -hhcCHHHhhccCCCcEEEEcCCC
Q 007040 234 -QIINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 234 -~lI~~~~L~~MK~gAiLINvgRG 256 (620)
..+.. +.++++.+++++.-.
T Consensus 197 ~~~i~~---~~l~~~~~V~DlvY~ 217 (272)
T 3pwz_A 197 LPPLPA---DVLGEAALAYELAYG 217 (272)
T ss_dssp CCCCCG---GGGTTCSEEEESSCS
T ss_pred CCCCCH---HHhCcCCEEEEeecC
Confidence 11222 234556555555443
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0014 Score=68.49 Aligned_cols=92 Identities=21% Similarity=0.289 Sum_probs=61.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCc---c---------ccCCceecCCHHhhhcCCcEEEEcc--c
Q 007040 163 LVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKV---T---------FPSAARRMDTLNDLLAASDVISLHC--A 227 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~---~---------~~~g~~~~~sL~eLL~~sDvVil~l--P 227 (620)
++|+|||.|.+|..+|..|...|+ .|..||+.....+. . ....+....++ +.++.||+|++++ |
T Consensus 15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg~p 93 (328)
T 2hjr_A 15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAGVP 93 (328)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCCCC
Confidence 689999999999999999998898 99999998643221 0 01112333567 7789999999998 4
Q ss_pred CChh---------hHhhcC--HHHhhccCCCcEEEEcCC
Q 007040 228 VTDE---------TIQIIN--AECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 228 lT~~---------T~~lI~--~~~L~~MK~gAiLINvgR 255 (620)
..+. +..++- .+.+....|++++|+++-
T Consensus 94 ~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN 132 (328)
T 2hjr_A 94 RKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITN 132 (328)
T ss_dssp CCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4221 111211 122333358899988755
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00054 Score=70.51 Aligned_cols=92 Identities=14% Similarity=0.058 Sum_probs=60.7
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcccc-CCceecCCHHhhhcCCcEEEEcccCC--hhhH-h
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFP-SAARRMDTLNDLLAASDVISLHCAVT--DETI-Q 234 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~~-~g~~~~~sL~eLL~~sDvVil~lPlT--~~T~-~ 234 (620)
+.|+++.|||.|.+|++++..|...|+ +|++++|+......... .......++.+ + ++|+||+++|.. +.+. -
T Consensus 120 ~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~-l-~~DivInaTp~Gm~~~~~~~ 197 (282)
T 3fbt_A 120 IKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSN-L-KGDVIINCTPKGMYPKEGES 197 (282)
T ss_dssp CTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTT-C-CCSEEEECSSTTSTTSTTCC
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHh-c-cCCEEEECCccCccCCCccC
Confidence 689999999999999999999999999 99999998744321111 11122334445 4 899999999974 1111 1
Q ss_pred hcCHHHhhccCCCcEEEEcCCC
Q 007040 235 IINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 235 lI~~~~L~~MK~gAiLINvgRG 256 (620)
.+..+ .++++.+++++.-.
T Consensus 198 pi~~~---~l~~~~~v~DlvY~ 216 (282)
T 3fbt_A 198 PVDKE---VVAKFSSAVDLIYN 216 (282)
T ss_dssp SSCHH---HHTTCSEEEESCCS
T ss_pred CCCHH---HcCCCCEEEEEeeC
Confidence 23332 24556666665443
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00089 Score=68.99 Aligned_cols=104 Identities=17% Similarity=0.180 Sum_probs=63.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC---cccc------CCc-eecCCHHhhhcCCcEEEEcccCCh
Q 007040 163 LVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK---VTFP------SAA-RRMDTLNDLLAASDVISLHCAVTD 230 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~--~V~~~dr~~~~~~---~~~~------~g~-~~~~sL~eLL~~sDvVil~lPlT~ 230 (620)
++|+|||.|.||..+|..|...|+ +|..||+...... .... ... ....+. +.+..||+|+++++...
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~-~a~~~aDvVIi~~~~~~ 79 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGGH-SELADAQVVILTAGANQ 79 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEECG-GGGTTCSEEEECC----
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECCH-HHhCCCCEEEEcCCCCC
Confidence 479999999999999999998898 9999998753111 0000 011 111344 56889999999995432
Q ss_pred h-----------hHhhcC--HHHhhccCCCcEEEEcCCChhhcHHHHHHH
Q 007040 231 E-----------TIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCAVKQL 267 (620)
Q Consensus 231 ~-----------T~~lI~--~~~L~~MK~gAiLINvgRG~vVDe~AL~~A 267 (620)
. +..++. ...+....|++++|+++-+.-+....+.+.
T Consensus 80 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~~~~~~~~~~ 129 (304)
T 2v6b_A 80 KPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLATQL 129 (304)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHHHHHHHHHHH
T ss_pred CCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHh
Confidence 1 212221 123344468999999766544434444444
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00086 Score=69.49 Aligned_cols=68 Identities=13% Similarity=0.166 Sum_probs=51.3
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEEE-EECCCCCCCCccc-cCCc-eecCCHHhhhc--CCcEEEEcccCCh
Q 007040 163 LVLGIVGRSASARALATRSLSF-KMSVL-YFDVPEGKGKVTF-PSAA-RRMDTLNDLLA--ASDVISLHCAVTD 230 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-G~~V~-~~dr~~~~~~~~~-~~g~-~~~~sL~eLL~--~sDvVil~lPlT~ 230 (620)
.+|||||+|.||+.+++.+... +++|. ++|+++....... ..++ ..+.+++++++ ++|+|++++|...
T Consensus 3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~ 76 (344)
T 3ezy_A 3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTNT 76 (344)
T ss_dssp EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGGG
T ss_pred eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCcc
Confidence 4799999999999999999875 77876 6788764332111 1233 35689999998 7999999999653
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00027 Score=72.04 Aligned_cols=95 Identities=13% Similarity=0.083 Sum_probs=64.7
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc---cC----C---ceecCCHHhhhcCCcEEEEcccCC
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF---PS----A---ARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~---~~----g---~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
+.|+++.|+|.|.||+++|..|...| +|++++|+........ .. . .....++.+.+..+|+|++++|..
T Consensus 126 l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~DilVn~ag~~ 204 (287)
T 1nvt_A 126 VKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPIG 204 (287)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCTT
T ss_pred cCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeHHHhhCCCCEEEECCCCC
Confidence 67899999999999999999999999 9999999753322110 00 0 001123356678899999999965
Q ss_pred hhhH---hhcCHHHhhccCCCcEEEEcCCCh
Q 007040 230 DETI---QIINAECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 230 ~~T~---~lI~~~~L~~MK~gAiLINvgRG~ 257 (620)
.... ..+. ....++++++++|+....
T Consensus 205 ~~~~~~~~~~~--~~~~l~~~~~v~Dv~y~p 233 (287)
T 1nvt_A 205 MYPNIDVEPIV--KAEKLREDMVVMDLIYNP 233 (287)
T ss_dssp CTTCCSSCCSS--CSTTCCSSSEEEECCCSS
T ss_pred CCCCCCCCCCC--CHHHcCCCCEEEEeeeCC
Confidence 3210 0120 135678889999987643
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0023 Score=66.60 Aligned_cols=92 Identities=20% Similarity=0.251 Sum_probs=61.3
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC-------cc-----ccCCceecCCHHhhhcCCcEEEEcc--c
Q 007040 163 LVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK-------VT-----FPSAARRMDTLNDLLAASDVISLHC--A 227 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~-------~~-----~~~g~~~~~sL~eLL~~sDvVil~l--P 227 (620)
++|+|||.|.+|..+|..|...|+ .|..||....... .. ....+....++ +.++.||+|++++ |
T Consensus 5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~g~p 83 (322)
T 1t2d_A 5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTAGFT 83 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECCSCS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCCC
Confidence 589999999999999999998888 9999998764222 00 01112233567 7789999999998 5
Q ss_pred CChhh------H--------hhcC--HHHhhccCCCcEEEEcCC
Q 007040 228 VTDET------I--------QIIN--AECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 228 lT~~T------~--------~lI~--~~~L~~MK~gAiLINvgR 255 (620)
..+.. + .++- .+.+....|++++|+++-
T Consensus 84 ~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 127 (322)
T 1t2d_A 84 KAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTN 127 (322)
T ss_dssp SCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred CCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 44321 1 1110 112333358999998754
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00093 Score=69.02 Aligned_cols=69 Identities=10% Similarity=0.029 Sum_probs=52.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEEE-EECCCCCCCCcc-ccCCc-eecCCHHhhhc--CCcEEEEcccCChh
Q 007040 163 LVLGIVGRSASARALATRSLSF-KMSVL-YFDVPEGKGKVT-FPSAA-RRMDTLNDLLA--ASDVISLHCAVTDE 231 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-G~~V~-~~dr~~~~~~~~-~~~g~-~~~~sL~eLL~--~sDvVil~lPlT~~ 231 (620)
.+|||||+|.||+.+++.++.. +++|. ++|++....... ...++ ..+.++++++. +.|+|++++|....
T Consensus 6 ~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h 80 (330)
T 3e9m_A 6 IRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQGH 80 (330)
T ss_dssp EEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGGGH
T ss_pred EEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCHHH
Confidence 5799999999999999999875 77876 678876443211 11233 35679999998 79999999996643
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00071 Score=69.52 Aligned_cols=107 Identities=11% Similarity=0.092 Sum_probs=65.7
Q ss_pred cEEEEEeCChhhH-HHHHHHhhC-CCEEEEECCCCCCCCccc-cCCcee-cCCHHhhh-cCCcEEEEcccCChhhHhhcC
Q 007040 163 LVLGIVGRSASAR-ALATRSLSF-KMSVLYFDVPEGKGKVTF-PSAARR-MDTLNDLL-AASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 163 ktVGIIGlG~IG~-~vA~~Lkaf-G~~V~~~dr~~~~~~~~~-~~g~~~-~~sL~eLL-~~sDvVil~lPlT~~T~~lI~ 237 (620)
.+|||||+|.||+ .+++.+... +++|+++|++........ ..++.. ..+..+++ .++|+|++++|.... .-+
T Consensus 3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~~h--~~~- 79 (323)
T 1xea_A 3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVH--STL- 79 (323)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGH--HHH-
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCchhH--HHH-
Confidence 4799999999998 499988765 788889998864332111 112222 33444455 689999999994422 111
Q ss_pred HHHhhccCCCc-EEEEc-CCChhhcHHHHHHHHHcCCcc
Q 007040 238 AECLQHIKPGA-FLVNT-GSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 238 ~~~L~~MK~gA-iLINv-gRG~vVDe~AL~~AL~~G~I~ 274 (620)
....++.|. +++.- .--.+-+..+|.++.++..+.
T Consensus 80 --~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~ 116 (323)
T 1xea_A 80 --AAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQP 116 (323)
T ss_dssp --HHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred --HHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCe
Confidence 123344454 66653 222345566688887766554
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0011 Score=69.19 Aligned_cols=69 Identities=12% Similarity=0.013 Sum_probs=51.5
Q ss_pred CcEEEEEeCChhhH-HHHHHHhhC-CCEEE-EECCCCCCCCcc-ccCCceecCCHHhhhc--CCcEEEEcccCCh
Q 007040 162 GLVLGIVGRSASAR-ALATRSLSF-KMSVL-YFDVPEGKGKVT-FPSAARRMDTLNDLLA--ASDVISLHCAVTD 230 (620)
Q Consensus 162 GktVGIIGlG~IG~-~vA~~Lkaf-G~~V~-~~dr~~~~~~~~-~~~g~~~~~sL~eLL~--~sDvVil~lPlT~ 230 (620)
-.+|||||+|.||+ .+++.++.. +++|. ++|++....... ...++..+.+++++++ +.|+|++++|...
T Consensus 27 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~ 101 (350)
T 3rc1_A 27 PIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPAVL 101 (350)
T ss_dssp CEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCGGG
T ss_pred ceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCcHH
Confidence 46799999999999 789988877 78876 678876433211 1124555689999997 4899999999653
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00048 Score=72.17 Aligned_cols=68 Identities=18% Similarity=0.197 Sum_probs=53.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEEE-EECCCCCCCCccccCCceecCCHHhhhc--CCcEEEEcccCCh
Q 007040 163 LVLGIVGRSASARALATRSLSF-KMSVL-YFDVPEGKGKVTFPSAARRMDTLNDLLA--ASDVISLHCAVTD 230 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-G~~V~-~~dr~~~~~~~~~~~g~~~~~sL~eLL~--~sDvVil~lPlT~ 230 (620)
.+|||||+|.||+..++.++.. +++|. ++|++..........++..+.+++++++ +.|+|++++|...
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~ 77 (359)
T 3e18_A 6 YQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPNDS 77 (359)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCGGG
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCcHH
Confidence 5799999999999999999877 78876 5688764433222345566789999998 7899999999653
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0015 Score=67.41 Aligned_cols=106 Identities=11% Similarity=0.126 Sum_probs=66.8
Q ss_pred cEEEEEeCChhhH-HHHHHHhhCCCEE-EEECCCCCCCCcccc-C-CceecCCHHhhhc--CCcEEEEcccCChhhHhhc
Q 007040 163 LVLGIVGRSASAR-ALATRSLSFKMSV-LYFDVPEGKGKVTFP-S-AARRMDTLNDLLA--ASDVISLHCAVTDETIQII 236 (620)
Q Consensus 163 ktVGIIGlG~IG~-~vA~~LkafG~~V-~~~dr~~~~~~~~~~-~-g~~~~~sL~eLL~--~sDvVil~lPlT~~T~~lI 236 (620)
.+|||||+|.+|. .++..++..|++| .++|+++........ . +...+.+++++++ +.|+|++++|......
T Consensus 5 ~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~--- 81 (336)
T 2p2s_A 5 IRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPCDRAE--- 81 (336)
T ss_dssp CEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGGGHHH---
T ss_pred cEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChhhHHH---
Confidence 4799999999996 6788777678986 578988755432111 1 3445679999997 5899999999553211
Q ss_pred CHHHhhccCCCc-EEEEc-CCChhhcHHHHHHHHHcCCc
Q 007040 237 NAECLQHIKPGA-FLVNT-GSSQLLDDCAVKQLLIDGTL 273 (620)
Q Consensus 237 ~~~~L~~MK~gA-iLINv-gRG~vVDe~AL~~AL~~G~I 273 (620)
-.+..|+.|. +|+.- ---.+-+.++|+++.++..+
T Consensus 82 --~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~ 118 (336)
T 2p2s_A 82 --LALRTLDAGKDFFTAKPPLTTLEQLDAVQRRVAETGR 118 (336)
T ss_dssp --HHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHCC
T ss_pred --HHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence 1223344454 55542 22233445556666655443
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00044 Score=71.98 Aligned_cols=68 Identities=19% Similarity=0.229 Sum_probs=52.8
Q ss_pred CcEEEEEeCChhhHHHHHHHhhC--CCEEE-EECCCCCCCCcc-ccCCceecCCHHhhhc--CCcEEEEcccCC
Q 007040 162 GLVLGIVGRSASARALATRSLSF--KMSVL-YFDVPEGKGKVT-FPSAARRMDTLNDLLA--ASDVISLHCAVT 229 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lkaf--G~~V~-~~dr~~~~~~~~-~~~g~~~~~sL~eLL~--~sDvVil~lPlT 229 (620)
-.+|||||+|.||+..++.+... +++|+ ++|++....... ...++..+.+++++++ +.|+|++++|..
T Consensus 13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~ 86 (354)
T 3q2i_A 13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPSG 86 (354)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCGG
T ss_pred cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCcH
Confidence 35799999999999999999877 78866 788876443211 1124566789999997 799999999955
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0024 Score=64.80 Aligned_cols=98 Identities=10% Similarity=0.054 Sum_probs=71.2
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEE-EEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHH
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSV-LYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAE 239 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V-~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~ 239 (620)
..++|++||+|+||+.+++. . ++++ .+|+ .... .. ++....+++++++++|+|+-|.+.. -+.+.
T Consensus 11 ~~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~--~k~g--el--gv~a~~d~d~lla~pD~VVe~A~~~-----av~e~ 76 (253)
T 1j5p_A 11 HHMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD--RISK--DI--PGVVRLDEFQVPSDVSTVVECASPE-----AVKEY 76 (253)
T ss_dssp CCCEEEEECCSHHHHHHHHH--S-CCSEEEEEC--SSCC--CC--SSSEECSSCCCCTTCCEEEECSCHH-----HHHHH
T ss_pred ccceEEEECcCHHHHHHHhc--C-CcEEEEEEe--cccc--cc--CceeeCCHHHHhhCCCEEEECCCHH-----HHHHH
Confidence 57889999999999999998 4 8865 5666 2222 12 5556678999999999999887422 23333
Q ss_pred HhhccCCCcEEEEcCCChhhcH---HHHHHHHHcCC
Q 007040 240 CLQHIKPGAFLVNTGSSQLLDD---CAVKQLLIDGT 272 (620)
Q Consensus 240 ~L~~MK~gAiLINvgRG~vVDe---~AL~~AL~~G~ 272 (620)
....++.|.-+|-++-|.+.|. +.|.++.+.|.
T Consensus 77 ~~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg 112 (253)
T 1j5p_A 77 SLQILKNPVNYIIISTSAFADEVFRERFFSELKNSP 112 (253)
T ss_dssp HHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCS
T ss_pred HHHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCC
Confidence 5667889999999999988886 44555555554
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00069 Score=70.72 Aligned_cols=71 Identities=17% Similarity=0.211 Sum_probs=51.8
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCC---CCCcc---cc--CC--c--eecCC---HHhhhcCCcEE
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEG---KGKVT---FP--SA--A--RRMDT---LNDLLAASDVI 222 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~---~~~~~---~~--~g--~--~~~~s---L~eLL~~sDvV 222 (620)
.+.|+++.|+|.|.+|+++|..|...|+ +|++++|+.. ..... +. .+ + ...++ +.+.+..+|+|
T Consensus 151 ~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDiI 230 (315)
T 3tnl_A 151 DIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIF 230 (315)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEE
T ss_pred CccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCEE
Confidence 4789999999999999999999999999 9999999832 11100 00 00 1 11222 55667899999
Q ss_pred EEcccCC
Q 007040 223 SLHCAVT 229 (620)
Q Consensus 223 il~lPlT 229 (620)
|+++|..
T Consensus 231 INaTp~G 237 (315)
T 3tnl_A 231 TNATGVG 237 (315)
T ss_dssp EECSSTT
T ss_pred EECccCC
Confidence 9999964
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0028 Score=68.15 Aligned_cols=92 Identities=13% Similarity=0.102 Sum_probs=67.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC--------CEEEEECCCCCCCC-------------------ccccCCceecCCHHhh
Q 007040 163 LVLGIVGRSASARALATRSLSFK--------MSVLYFDVPEGKGK-------------------VTFPSAARRMDTLNDL 215 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG--------~~V~~~dr~~~~~~-------------------~~~~~g~~~~~sL~eL 215 (620)
.+|+|||.|..|.++|..|...| .+|..|.+.+.... ..++..+....+|.+.
T Consensus 35 ~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~a 114 (391)
T 4fgw_A 35 FKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDS 114 (391)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHH
T ss_pred CeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHH
Confidence 37999999999999999997544 46888876542100 1233445666789999
Q ss_pred hcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCC
Q 007040 216 LAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 216 L~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG 256 (620)
+..||+|++++|. ...+.++. +....++++..+|+++-|
T Consensus 115 l~~ad~ii~avPs-~~~r~~l~-~l~~~~~~~~~iv~~~KG 153 (391)
T 4fgw_A 115 VKDVDIIVFNIPH-QFLPRICS-QLKGHVDSHVRAISCLKG 153 (391)
T ss_dssp HTTCSEEEECSCG-GGHHHHHH-HHTTTSCTTCEEEECCCS
T ss_pred HhcCCEEEEECCh-hhhHHHHH-HhccccCCCceeEEeccc
Confidence 9999999999994 34444443 344567899999999877
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0011 Score=71.37 Aligned_cols=151 Identities=14% Similarity=0.179 Sum_probs=99.0
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC----CC---CCc---cccCC---ceecCCHHhhhcCCcEEEE
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE----GK---GKV---TFPSA---ARRMDTLNDLLAASDVISL 224 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~----~~---~~~---~~~~g---~~~~~sL~eLL~~sDvVil 224 (620)
.+...+|.|+|.|..|..+|+.+.++|. +|+.+|++. .. ... .+... .....+|.+++..+|+++=
T Consensus 185 ~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ADV~IG 264 (398)
T 2a9f_A 185 SLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGADIFIG 264 (398)
T ss_dssp CTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTCSEEE
T ss_pred CCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCCEEEe
Confidence 5788999999999999999999999999 999999874 11 110 01000 0013469999999999886
Q ss_pred cccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCC-cceeEeecCCCCCCCCccccCCCcEEEcCCC
Q 007040 225 HCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGT-LAGCALDGAEGPQWMEAWVREMPNVLILPRS 303 (620)
Q Consensus 225 ~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~-I~GAaLDV~E~P~~~~spL~~~pNVIlTPHi 303 (620)
.- +-++|.++.++.|+++++++.++.... |..=.++.+.|. |.+-+ -...| -+..|+++=|=+
T Consensus 265 ~S-----apgl~T~EmVk~Ma~~pIIfalsNPt~--E~~pe~a~~~g~~i~atG--rs~~p-------~Q~NN~~~FPgi 328 (398)
T 2a9f_A 265 VS-----APGVLKAEWISKMAARPVIFAMANPIP--EIYPDEALEAGAYIVGTG--RSDFP-------NQINNVLAFPGI 328 (398)
T ss_dssp CC-----STTCCCHHHHHTSCSSCEEEECCSSSC--SSCHHHHHTTTCSEEEES--CTTSS-------SBCCGGGTHHHH
T ss_pred cC-----CCCCCCHHHHHhhCCCCEEEECCCCCc--cCCHHHHHHhCCeEEEeC--CCCCC-------CcCCceeEcchH
Confidence 63 248999999999999999999998653 222223333344 22111 11112 145677777753
Q ss_pred CCCcHH-----HHHHHHHHHHHHHHHH
Q 007040 304 ADYSEE-----VWMEIRDKAISVLQTF 325 (620)
Q Consensus 304 Ag~T~e-----a~~~~~~~a~enL~~~ 325 (620)
+-..-. ..++|.-.+++.|..+
T Consensus 329 ~~Gal~~~a~~I~d~m~~aAa~alA~~ 355 (398)
T 2a9f_A 329 FRGALDARAKTITVEMQIAAAKGIASL 355 (398)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCcCCCHHHHHHHHHHHHhc
Confidence 322111 2356666777777765
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0019 Score=70.35 Aligned_cols=109 Identities=13% Similarity=0.149 Sum_probs=77.8
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCC---EEEEEC----CC--CCCCCc---ccc------C--Cc-eecCCHHhhhc
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKM---SVLYFD----VP--EGKGKV---TFP------S--AA-RRMDTLNDLLA 217 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~---~V~~~d----r~--~~~~~~---~~~------~--g~-~~~~sL~eLL~ 217 (620)
.+.++++.|+|.|..|++++..|...|. +|+++| |+ ...... ... . .. ....+|.+.+.
T Consensus 183 ~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~l~ 262 (439)
T 2dvm_A 183 KISEITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALK 262 (439)
T ss_dssp CTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHHHT
T ss_pred CccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHHhc
Confidence 4678999999999999999999999998 899999 76 222111 000 0 00 02356889999
Q ss_pred CCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCC
Q 007040 218 ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGT 272 (620)
Q Consensus 218 ~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~ 272 (620)
.+|+|+.+.|..+ +++..+.++.|+++.++++++... .+.-+.+|.+.|.
T Consensus 263 ~aDVlInaT~~~~---G~~~~e~v~~m~~~~iVfDLynP~--~t~~~~~A~~~G~ 312 (439)
T 2dvm_A 263 DADVLISFTRPGP---GVIKPQWIEKMNEDAIVFPLANPV--PEILPEEAKKAGA 312 (439)
T ss_dssp TCSEEEECSCCCS---SSSCHHHHTTSCTTCEEEECCSSS--CSSCHHHHHHHTC
T ss_pred cCCEEEEcCCCcc---CCCChHHHHhcCCCCEEEECCCCC--CcchHHHHHHcCC
Confidence 9999999998632 466667788899999999995443 3444444444443
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0025 Score=66.25 Aligned_cols=68 Identities=12% Similarity=0.093 Sum_probs=51.2
Q ss_pred cEEEEEeCChhhHH-HHHHHhhC-CCEEE-EECCCCCCCCccccCCceecCCHHhhhcC--CcEEEEcccCChh
Q 007040 163 LVLGIVGRSASARA-LATRSLSF-KMSVL-YFDVPEGKGKVTFPSAARRMDTLNDLLAA--SDVISLHCAVTDE 231 (620)
Q Consensus 163 ktVGIIGlG~IG~~-vA~~Lkaf-G~~V~-~~dr~~~~~~~~~~~g~~~~~sL~eLL~~--sDvVil~lPlT~~ 231 (620)
.+|||||+|.||+. .+..++.. +++|. ++|+++..... ...+...+.++++++.. .|+|++++|....
T Consensus 8 ~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~-~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H 80 (352)
T 3kux_A 8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHA-DWPAIPVVSDPQMLFNDPSIDLIVIPTPNDTH 80 (352)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHT-TCSSCCEESCHHHHHHCSSCCEEEECSCTTTH
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHh-hCCCCceECCHHHHhcCCCCCEEEEeCChHHH
Confidence 57999999999997 78888766 78876 67887643321 12245567899999986 8999999997643
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0023 Score=67.20 Aligned_cols=67 Identities=10% Similarity=0.079 Sum_probs=50.3
Q ss_pred cEEEEEeCChhhHH-HHHHHhhC-CCEEE-EECCCCCCCCccccCCceecCCHHhhhc--CCcEEEEcccCCh
Q 007040 163 LVLGIVGRSASARA-LATRSLSF-KMSVL-YFDVPEGKGKVTFPSAARRMDTLNDLLA--ASDVISLHCAVTD 230 (620)
Q Consensus 163 ktVGIIGlG~IG~~-vA~~Lkaf-G~~V~-~~dr~~~~~~~~~~~g~~~~~sL~eLL~--~sDvVil~lPlT~ 230 (620)
.+|||||+|.||+. .+..++.. +++|. ++|++...... ...+...+.+++++++ +.|+|++++|...
T Consensus 8 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~ 79 (364)
T 3e82_A 8 INIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKR-DLPDVTVIASPEAAVQHPDVDLVVIASPNAT 79 (364)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHH-HCTTSEEESCHHHHHTCTTCSEEEECSCGGG
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh-hCCCCcEECCHHHHhcCCCCCEEEEeCChHH
Confidence 47999999999997 77777766 78875 67887643221 1124556789999998 7899999999653
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0027 Score=65.86 Aligned_cols=68 Identities=10% Similarity=0.025 Sum_probs=48.8
Q ss_pred cEEEEEeCChhhHH-HHH-HHh-hCCCEEE-EECCCCCCCCccc-cCCceecCCHHhhhcC--CcEEEEcccCCh
Q 007040 163 LVLGIVGRSASARA-LAT-RSL-SFKMSVL-YFDVPEGKGKVTF-PSAARRMDTLNDLLAA--SDVISLHCAVTD 230 (620)
Q Consensus 163 ktVGIIGlG~IG~~-vA~-~Lk-afG~~V~-~~dr~~~~~~~~~-~~g~~~~~sL~eLL~~--sDvVil~lPlT~ 230 (620)
.+|||||+|.||+. .+. .+. .-+++|. ++|+++....... ..+...+.+++++++. .|+|++++|...
T Consensus 3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~ 77 (345)
T 3f4l_A 3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADS 77 (345)
T ss_dssp EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGGG
T ss_pred eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCChHH
Confidence 46999999999996 455 334 3478877 7888764432111 1245567899999987 899999999654
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0041 Score=62.60 Aligned_cols=81 Identities=11% Similarity=0.082 Sum_probs=56.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEE-ECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLY-FDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECL 241 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~-~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L 241 (620)
.+|+|+|+|+||+.+++.+...+.++.+ +|+.... ..++....++++++ .+|+|+-..+. ..+... +
T Consensus 4 mkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~-----~~gv~v~~dl~~l~-~~DVvIDft~p-~a~~~~-----~ 71 (243)
T 3qy9_A 4 MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA-----TTPYQQYQHIADVK-GADVAIDFSNP-NLLFPL-----L 71 (243)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-------CCSCBCSCTTTCT-TCSEEEECSCH-HHHHHH-----H
T ss_pred eEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc-----cCCCceeCCHHHHh-CCCEEEEeCCh-HHHHHH-----H
Confidence 5799999999999999999877557664 7877542 23455567899988 99998844431 222222 3
Q ss_pred hccCCCcEEEEcCCC
Q 007040 242 QHIKPGAFLVNTGSS 256 (620)
Q Consensus 242 ~~MK~gAiLINvgRG 256 (620)
. ++.|.-+|....|
T Consensus 72 ~-l~~g~~vVigTTG 85 (243)
T 3qy9_A 72 D-EDFHLPLVVATTG 85 (243)
T ss_dssp T-SCCCCCEEECCCS
T ss_pred H-HhcCCceEeCCCC
Confidence 3 6777777765566
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.004 Score=63.94 Aligned_cols=106 Identities=11% Similarity=0.097 Sum_probs=70.0
Q ss_pred CcEEEEEeC-ChhhHHHHHHHhhCCCEEE-EECCCCCCCCccccCCceecCCHHhhhc--CCcEEEEcccCChhhHhhcC
Q 007040 162 GLVLGIVGR-SASARALATRSLSFKMSVL-YFDVPEGKGKVTFPSAARRMDTLNDLLA--ASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 162 GktVGIIGl-G~IG~~vA~~LkafG~~V~-~~dr~~~~~~~~~~~g~~~~~sL~eLL~--~sDvVil~lPlT~~T~~lI~ 237 (620)
..+|+|+|+ |++|+.+++.++..|++++ .+||... .. ...+...+.+++++.. ..|++++++|.. ....++
T Consensus 7 ~~rVaViG~sG~~G~~~~~~l~~~g~~~V~~V~p~~~-g~--~~~G~~vy~sl~el~~~~~~D~viI~tP~~-~~~~~~- 81 (288)
T 2nu8_A 7 NTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKG-GT--THLGLPVFNTVREAVAATGATASVIYVPAP-FCKDSI- 81 (288)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCT-TC--EETTEEEESSHHHHHHHHCCCEEEECCCGG-GHHHHH-
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCcc-cc--eeCCeeccCCHHHHhhcCCCCEEEEecCHH-HHHHHH-
Confidence 467999999 9999999999998899844 6676532 11 1245666789999998 899999999954 222332
Q ss_pred HHHhhccCCCcEEEEcCCCh-hhcHHHHHHHHHcCCcc
Q 007040 238 AECLQHIKPGAFLVNTGSSQ-LLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~-vVDe~AL~~AL~~G~I~ 274 (620)
.+.++.=. . .+|..+-|- .-+...|.++.++..+.
T Consensus 82 ~ea~~~Gi-~-~iVi~t~G~~~~~~~~l~~~A~~~gv~ 117 (288)
T 2nu8_A 82 LEAIDAGI-K-LIITITEGIPTLDMLTVKVKLDEAGVR 117 (288)
T ss_dssp HHHHHTTC-S-EEEECCCCCCHHHHHHHHHHHHHHTCE
T ss_pred HHHHHCCC-C-EEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence 23333222 2 234444442 34566788888776553
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0049 Score=71.28 Aligned_cols=164 Identities=16% Similarity=0.103 Sum_probs=103.0
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC----------------------ccccCCceecCCHHhhhcCC
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK----------------------VTFPSAARRMDTLNDLLAAS 219 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~----------------------~~~~~g~~~~~sL~eLL~~s 219 (620)
=++|||||.|.||..||..+...|++|+.+|+++.... ...........+++ .+++|
T Consensus 316 i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~a 394 (742)
T 3zwc_A 316 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTK-ELSTV 394 (742)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGG-GGGSC
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHH-HHhhC
Confidence 36899999999999999999999999999998763211 00001122334454 47899
Q ss_pred cEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEEE
Q 007040 220 DVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLI 299 (620)
Q Consensus 220 DvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVIl 299 (620)
|+||=++|..-+.+.-+=+++=+.++|++||-.-.++ +....|.++++ ..-..+++=.|- |++ --||. -||-
T Consensus 395 DlVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSs--l~i~~ia~~~~-~p~r~ig~HFfn-P~~-~m~LV---Evi~ 466 (742)
T 3zwc_A 395 DLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSA--LNVDDIASSTD-RPQLVIGTHFFS-PAH-VMRLL---EVIP 466 (742)
T ss_dssp SEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHTTSS-CGGGEEEEECCS-STT-TCCEE---EEEE
T ss_pred CEEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCc--CChHHHHhhcC-CccccccccccC-CCC-CCceE---EEec
Confidence 9999999999998887767777789999998765554 44445555543 334445554443 332 11222 3666
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCccCC
Q 007040 300 LPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTEGCENE 345 (620)
Q Consensus 300 TPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~p~nvVn~~~~y~~~ 345 (620)
+++++ +++...+ .+-.+. -|+.|+ +|++..|++.+
T Consensus 467 g~~Ts---~e~~~~~----~~~~~~---lgK~pV-~vkd~pGFi~N 501 (742)
T 3zwc_A 467 SRYSS---PTTIATV----MSLSKK---IGKIGV-VVGNCYGFVGN 501 (742)
T ss_dssp CSSCC---HHHHHHH----HHHHHH---TTCEEE-ECCCSTTTTHH
T ss_pred CCCCC---HHHHHHH----HHHHHH---hCCCCc-ccCCCCCccHH
Confidence 66554 3333332 222222 366665 45666666543
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0013 Score=68.96 Aligned_cols=68 Identities=15% Similarity=0.223 Sum_probs=50.7
Q ss_pred CcEEEEEeCChhhHH-HHHHHhhC-CCEEE-EECCCCCCCCccccC--CceecCCHHhhhcCC--cEEEEcccCC
Q 007040 162 GLVLGIVGRSASARA-LATRSLSF-KMSVL-YFDVPEGKGKVTFPS--AARRMDTLNDLLAAS--DVISLHCAVT 229 (620)
Q Consensus 162 GktVGIIGlG~IG~~-vA~~Lkaf-G~~V~-~~dr~~~~~~~~~~~--g~~~~~sL~eLL~~s--DvVil~lPlT 229 (620)
..+|||||+|.||+. +++.+... +++|. ++|+++......... +...+.++++++++. |+|++++|..
T Consensus 5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~ 79 (359)
T 3m2t_A 5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGPPQ 79 (359)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSCHH
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCCcH
Confidence 357999999999995 88988876 78876 779876443322111 345578999999855 9999999944
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0013 Score=66.05 Aligned_cols=93 Identities=18% Similarity=0.156 Sum_probs=64.6
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCC-------------------CCc------cc-cC-Ccee
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGK-------------------GKV------TF-PS-AARR 208 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~-------------------~~~------~~-~~-g~~~ 208 (620)
...|.+++|.|||.|.+|..+|+.|...|. +|..+|+..-. .+. .. +. .+..
T Consensus 26 q~~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~ 105 (249)
T 1jw9_B 26 QEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITP 105 (249)
T ss_dssp HHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEE
T ss_pred HHHHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEE
Confidence 356899999999999999999999999998 89999987511 000 00 00 0111
Q ss_pred ----c--CCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEc
Q 007040 209 ----M--DTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNT 253 (620)
Q Consensus 209 ----~--~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINv 253 (620)
. .++.+++..+|+|+.+++ +.+++.+++...... +..+|+.
T Consensus 106 ~~~~~~~~~~~~~~~~~DvVi~~~d-~~~~~~~l~~~~~~~---~~p~i~~ 152 (249)
T 1jw9_B 106 VNALLDDAELAALIAEHDLVLDCTD-NVAVRNQLNAGCFAA---KVPLVSG 152 (249)
T ss_dssp ECSCCCHHHHHHHHHTSSEEEECCS-SHHHHHHHHHHHHHH---TCCEEEE
T ss_pred EeccCCHhHHHHHHhCCCEEEEeCC-CHHHHHHHHHHHHHc---CCCEEEe
Confidence 1 135677889999999986 567888887765553 3445554
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00096 Score=64.56 Aligned_cols=91 Identities=18% Similarity=0.119 Sum_probs=58.4
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-cCCce-------ecCCHHhh-hcCCcEEEEcccCChhhH
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF-PSAAR-------RMDTLNDL-LAASDVISLHCAVTDETI 233 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~-~~g~~-------~~~sL~eL-L~~sDvVil~lPlT~~T~ 233 (620)
++|.|+|+|.+|+.+|+.|...|++|+++|+++....... ..+.. ....|.++ +..+|+|++++|....+
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n- 79 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEVN- 79 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHHHH-
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcHHH-
Confidence 4699999999999999999999999999998764332111 01111 11224444 67899999999866443
Q ss_pred hhcCHHHhhccCCCcEEEEcCC
Q 007040 234 QIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgR 255 (620)
++-......+.+...+|-..+
T Consensus 80 -~~~~~~a~~~~~~~~iia~~~ 100 (218)
T 3l4b_C 80 -LFIAQLVMKDFGVKRVVSLVN 100 (218)
T ss_dssp -HHHHHHHHHTSCCCEEEECCC
T ss_pred -HHHHHHHHHHcCCCeEEEEEe
Confidence 332333444444555554433
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0014 Score=68.37 Aligned_cols=71 Identities=14% Similarity=0.238 Sum_probs=51.9
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCC---CCcc---cc--CC----ceecCCH---HhhhcCCcEE
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGK---GKVT---FP--SA----ARRMDTL---NDLLAASDVI 222 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~---~~~~---~~--~g----~~~~~sL---~eLL~~sDvV 222 (620)
.+.|+++.|+|.|.+|++++..|...|+ +|++++|+... .... +. .+ .....++ .+.+..+|+|
T Consensus 145 ~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~DiI 224 (312)
T 3t4e_A 145 DMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADIL 224 (312)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSEE
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceEE
Confidence 3689999999999999999999999999 89999998322 1100 00 01 1122344 5567889999
Q ss_pred EEcccCC
Q 007040 223 SLHCAVT 229 (620)
Q Consensus 223 il~lPlT 229 (620)
|+++|..
T Consensus 225 INaTp~G 231 (312)
T 3t4e_A 225 TNGTKVG 231 (312)
T ss_dssp EECSSTT
T ss_pred EECCcCC
Confidence 9999975
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0026 Score=66.32 Aligned_cols=107 Identities=10% Similarity=0.090 Sum_probs=69.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEE-EEECCCCCCCCccc-cCC----ceecCCHHhhhc--CCcEEEEcccCChhhH
Q 007040 163 LVLGIVGRSASARALATRSLSF-KMSV-LYFDVPEGKGKVTF-PSA----ARRMDTLNDLLA--ASDVISLHCAVTDETI 233 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-G~~V-~~~dr~~~~~~~~~-~~g----~~~~~sL~eLL~--~sDvVil~lPlT~~T~ 233 (620)
.+|||||+|.||+.+++.+... ++++ .++|++........ ..+ ...+.+++++++ +.|+|++++|....
T Consensus 7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h-- 84 (362)
T 1ydw_A 7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLH-- 84 (362)
T ss_dssp EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGH--
T ss_pred eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChHHH--
Confidence 4799999999999999998875 6776 47788764322110 112 345678999997 58999999995422
Q ss_pred hhcCHHHhhccCCCc-EEEEc-CCChhhcHHHHHHHHHcCCcc
Q 007040 234 QIINAECLQHIKPGA-FLVNT-GSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 234 ~lI~~~~L~~MK~gA-iLINv-gRG~vVDe~AL~~AL~~G~I~ 274 (620)
. .-....++.|. +|+.- ---.+-+.++|.++.++..+.
T Consensus 85 ~---~~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~ 124 (362)
T 1ydw_A 85 V---EWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQ 124 (362)
T ss_dssp H---HHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCC
T ss_pred H---HHHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCE
Confidence 1 11234456665 44432 123344556788888776654
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0026 Score=65.97 Aligned_cols=94 Identities=12% Similarity=0.151 Sum_probs=59.2
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCCc---cccC-------CceecCCHHhhhcCCcEEEEcccCC
Q 007040 162 GLVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGKV---TFPS-------AARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~--~V~~~dr~~~~~~~---~~~~-------g~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
-++|+|||.|.||.++|..|+..|. +|..+|++...... .... ......+..+.++.||+|+++.|..
T Consensus 6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~~~~ 85 (316)
T 1ldn_A 6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGAN 85 (316)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSCC
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcCCCC
Confidence 3689999999999999999986665 89999987531110 0000 1111123456789999999998754
Q ss_pred hh-----------hHhhcC--HHHhhccCCCcEEEEcCC
Q 007040 230 DE-----------TIQIIN--AECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 230 ~~-----------T~~lI~--~~~L~~MK~gAiLINvgR 255 (620)
.. +..++. .+.+....|++++|+++-
T Consensus 86 ~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tN 124 (316)
T 1ldn_A 86 QKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN 124 (316)
T ss_dssp CCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred CCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 21 111110 122333468888998755
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0034 Score=66.13 Aligned_cols=67 Identities=18% Similarity=0.280 Sum_probs=49.0
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCce--ecC---CHHhhhcCCcEEEEcc
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR--RMD---TLNDLLAASDVISLHC 226 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~--~~~---sL~eLL~~sDvVil~l 226 (620)
+.|++|+|||.|.+|+.+++.++.+|++|+++|+++........+... .+. .+.++++.+|+|+...
T Consensus 12 ~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~~~ 83 (389)
T 3q2o_A 12 LPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTYEF 83 (389)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEESC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeeecc
Confidence 689999999999999999999999999999999876432211111111 112 3667888899985543
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0035 Score=64.66 Aligned_cols=92 Identities=17% Similarity=0.201 Sum_probs=62.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC--------cc--ccC--CceecCCHHhhhcCCcEEEEcccC
Q 007040 163 LVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK--------VT--FPS--AARRMDTLNDLLAASDVISLHCAV 228 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~--~V~~~dr~~~~~~--------~~--~~~--g~~~~~sL~eLL~~sDvVil~lPl 228 (620)
++|+|||.|.+|.++|..|...|. +|..||+.....+ .. +.. .+....+ .+.+..||+|+++.+.
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag~ 79 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL 79 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCCC
Confidence 479999999999999999988787 9999998763321 00 111 1222345 7889999999999764
Q ss_pred Chh-----------hHhhcC--HHHhhccCCCcEEEEcCC
Q 007040 229 TDE-----------TIQIIN--AECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 229 T~~-----------T~~lI~--~~~L~~MK~gAiLINvgR 255 (620)
... +..++. .+.+....|++++|+++-
T Consensus 80 ~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsN 119 (294)
T 1oju_A 80 ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (294)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence 311 112221 124555689999999984
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0093 Score=61.92 Aligned_cols=119 Identities=13% Similarity=0.119 Sum_probs=68.3
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCCc---cccC------CceecCCHHhhhcCCcEEEEcccCCh
Q 007040 162 GLVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGKV---TFPS------AARRMDTLNDLLAASDVISLHCAVTD 230 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~--~V~~~dr~~~~~~~---~~~~------g~~~~~sL~eLL~~sDvVil~lPlT~ 230 (620)
.++|+|||.|.+|..+|..|...|. +|..||........ .... ......+-.+.+..||+|+++.+...
T Consensus 7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g~p~ 86 (318)
T 1y6j_A 7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANR 86 (318)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC--
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence 4689999999999999999998887 99999987643220 0011 11111123567899999999998532
Q ss_pred h---h--------HhhcC--HHHhhccCCCcEEEEcCCChhhcHHHHHHH--HHcCCccee--Eeec
Q 007040 231 E---T--------IQIIN--AECLQHIKPGAFLVNTGSSQLLDDCAVKQL--LIDGTLAGC--ALDG 280 (620)
Q Consensus 231 ~---T--------~~lI~--~~~L~~MK~gAiLINvgRG~vVDe~AL~~A--L~~G~I~GA--aLDV 280 (620)
. + ..++- .+.+....|++++|+++-.-=+-...+.+. +...++.|. .||+
T Consensus 87 k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~~~~~~k~s~~p~~rviG~gt~Ld~ 153 (318)
T 1y6j_A 87 KPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDIITYMIQKWSGLPVGKVIGSGTVLDS 153 (318)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHHHHHHHHHHHTCCTTTEEECTTHHHH
T ss_pred CCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHHHHHHcCCCHHHEeccCCchHH
Confidence 1 1 11110 123333478999999754322333333333 223355444 4663
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0033 Score=60.78 Aligned_cols=73 Identities=15% Similarity=0.105 Sum_probs=51.6
Q ss_pred ceeecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCc-e--e---cCCHHhhhcCCcEEEEcccCC
Q 007040 157 MRRCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA-R--R---MDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 157 ~~~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~-~--~---~~sL~eLL~~sDvVil~lPlT 229 (620)
...+.|++|.|.|. |.||+.+++.|...|++|++++|+..........++ . . .+.+.+.+..+|+|+.+....
T Consensus 16 ~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~~ 95 (236)
T 3e8x_A 16 NLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAGSG 95 (236)
T ss_dssp -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCCCC
T ss_pred ccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCCCC
Confidence 45789999999997 999999999999999999999998643321111111 1 0 156778888999999888755
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0037 Score=65.15 Aligned_cols=94 Identities=13% Similarity=0.209 Sum_probs=61.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC---cccc-------CCceec-CCHHhhhcCCcEEEEcccCC
Q 007040 163 LVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK---VTFP-------SAARRM-DTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~--~V~~~dr~~~~~~---~~~~-------~g~~~~-~sL~eLL~~sDvVil~lPlT 229 (620)
++|+|||.|.||..+|..+...|+ +|..+|....... .... ...... .+..+.+.+||+|+++.+..
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~~ 80 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGLP 80 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC-
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCCC
Confidence 579999999999999999987776 9999999774321 0000 011111 24567889999999998643
Q ss_pred hh-----------hHhhcC--HHHhhccCCCcEEEEcCCC
Q 007040 230 DE-----------TIQIIN--AECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 230 ~~-----------T~~lI~--~~~L~~MK~gAiLINvgRG 256 (620)
.. |..++. .+.+....|++++|+++-.
T Consensus 81 ~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNP 120 (314)
T 3nep_X 81 RSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANP 120 (314)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCSS
T ss_pred CCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCCc
Confidence 21 222221 1244455789999999853
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.003 Score=63.36 Aligned_cols=94 Identities=17% Similarity=0.127 Sum_probs=64.8
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC---cc----------------------ccCC--cee
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK---VT----------------------FPSA--ARR 208 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~---~~----------------------~~~g--~~~ 208 (620)
...|.+++|.|||+|.+|..+|+.|...|. ++..+|...-... .. .... +..
T Consensus 23 q~~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~ 102 (251)
T 1zud_1 23 QQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTA 102 (251)
T ss_dssp HHHHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEE
T ss_pred HHHHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 357899999999999999999999999998 8888886531100 00 0000 111
Q ss_pred ------cCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcC
Q 007040 209 ------MDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 209 ------~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvg 254 (620)
.+++.+++..+|+|+.++. +.+++.+++...... +.-+|..+
T Consensus 103 ~~~~~~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~---~~p~i~~~ 150 (251)
T 1zud_1 103 LQQRLTGEALKDAVARADVVLDCTD-NMATRQEINAACVAL---NTPLITAS 150 (251)
T ss_dssp ECSCCCHHHHHHHHHHCSEEEECCS-SHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred EeccCCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHHh---CCCEEEEe
Confidence 1235677888999999987 667888888776653 33456543
|
| >2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.036 Score=57.69 Aligned_cols=95 Identities=15% Similarity=0.077 Sum_probs=70.2
Q ss_pred ecCcEEEEEeCC--hhhHHHHHHHhhCCCEEEEECCCCCCCCccc---------cCC--ceecCCHHhhhcCCcEEEEcc
Q 007040 160 CRGLVLGIVGRS--ASARALATRSLSFKMSVLYFDVPEGKGKVTF---------PSA--ARRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 160 L~GktVGIIGlG--~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~---------~~g--~~~~~sL~eLL~~sDvVil~l 226 (620)
+.|.+|++||=| ++..+++..+..||++|.+..|..-.....+ ..| +....++++.++.+|||..-.
T Consensus 146 l~gl~va~vGD~~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~~~ 225 (307)
T 2i6u_A 146 LRGLRLSYFGDGANNMAHSLLLGGVTAGIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHAAAAGADVLVTDT 225 (307)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred cCCeEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhcCCCEEEecc
Confidence 689999999986 9999999999999999999998764332111 122 445689999999999999843
Q ss_pred cC-------Chh-----hHhhcCHHHhhccCCCcEEEEcC
Q 007040 227 AV-------TDE-----TIQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 227 Pl-------T~~-----T~~lI~~~~L~~MK~gAiLINvg 254 (620)
=. .++ ..--++.+.++.+||+++|.-+.
T Consensus 226 w~smg~~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~l 265 (307)
T 2i6u_A 226 WTSMGQENDGLDRVKPFRPFQLNSRLLALADSDAIVLHCL 265 (307)
T ss_dssp SSCTTCTTSCCCSSGGGGGGCBCHHHHHHSCTTCEEEECS
T ss_pred eecCCcccchHHHHHHHhhcCCCHHHHhhcCCCcEEECCC
Confidence 21 011 12345888888888888888764
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0061 Score=62.24 Aligned_cols=96 Identities=13% Similarity=0.256 Sum_probs=60.5
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC---ccccC------Cc--eecCCHHhhhcCCcEEEEccc
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK---VTFPS------AA--RRMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~--~V~~~dr~~~~~~---~~~~~------g~--~~~~sL~eLL~~sDvVil~lP 227 (620)
..++|+|||.|.||..+|..|...|+ +|..+|++..... ..... .. ....+. +.+..||+|+++++
T Consensus 6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~aD~Vii~v~ 84 (319)
T 1lld_A 6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVITAG 84 (319)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTTCSEEEECCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCH-HHhCCCCEEEECCC
Confidence 34689999999999999999998898 9999998752211 00001 11 111243 56789999999995
Q ss_pred CChh---h--------HhhcC--HHHhhccCCCcEEEEcCCCh
Q 007040 228 VTDE---T--------IQIIN--AECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 228 lT~~---T--------~~lI~--~~~L~~MK~gAiLINvgRG~ 257 (620)
.... + ..++. ...+....+++++|++.-|-
T Consensus 85 ~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np~ 127 (319)
T 1lld_A 85 PRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPV 127 (319)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCch
Confidence 3321 1 11110 11223346889999987664
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0083 Score=61.91 Aligned_cols=92 Identities=15% Similarity=0.211 Sum_probs=59.3
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCc---cc---------cCCceecCCHHhhhcCCcEEEEcccCC
Q 007040 163 LVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKV---TF---------PSAARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~---~~---------~~g~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
++|+|||.|.||..+|..+...|+ +|..+|........ .. ...+....++ +.++.||+|+++.+..
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g~p 81 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGAP 81 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC-
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCCCC
Confidence 579999999999999999998886 99999987632210 00 0112223566 6789999999998543
Q ss_pred hh-----------hHhhcC--HHHhhccCCCcEEEEcCC
Q 007040 230 DE-----------TIQIIN--AECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 230 ~~-----------T~~lI~--~~~L~~MK~gAiLINvgR 255 (620)
.. +..++- .+.+....|++++|+++-
T Consensus 82 ~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tN 120 (309)
T 1ur5_A 82 RKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN 120 (309)
T ss_dssp -------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCC
Confidence 21 111110 122334458889888754
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0028 Score=61.80 Aligned_cols=90 Identities=14% Similarity=0.118 Sum_probs=59.5
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCce-------ecCCHHhh-hcCCcEEEEcccCChhhH
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR-------RMDTLNDL-LAASDVISLHCAVTDETI 233 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~-------~~~sL~eL-L~~sDvVil~lPlT~~T~ 233 (620)
.+++.|+|+|.+|+.+|+.|...|+ |+++|+++....... .+.. ..+.|.++ +..+|+|++++|....
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~-- 84 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSE-- 84 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHHH--
T ss_pred CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcHH--
Confidence 4579999999999999999999999 999998764322111 1211 11224444 7889999999986533
Q ss_pred hhcCHHHhhccCCCcEEEEcCC
Q 007040 234 QIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgR 255 (620)
+++-......+.++..+|--.+
T Consensus 85 n~~~~~~a~~~~~~~~iia~~~ 106 (234)
T 2aef_A 85 TIHCILGIRKIDESVRIIAEAE 106 (234)
T ss_dssp HHHHHHHHHHHCSSSEEEEECS
T ss_pred HHHHHHHHHHHCCCCeEEEEEC
Confidence 3444455666777744444333
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0017 Score=67.18 Aligned_cols=68 Identities=18% Similarity=0.172 Sum_probs=51.3
Q ss_pred cEEEEEeCChhhHHHHHHHh-h-CCCEEE-EECCCCCCCCcc-ccCC--ceecCCHHhhhcC--CcEEEEcccCCh
Q 007040 163 LVLGIVGRSASARALATRSL-S-FKMSVL-YFDVPEGKGKVT-FPSA--ARRMDTLNDLLAA--SDVISLHCAVTD 230 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lk-a-fG~~V~-~~dr~~~~~~~~-~~~g--~~~~~sL~eLL~~--sDvVil~lPlT~ 230 (620)
.+|||||+|.||+..++.+. . -+++|. ++|++....... ...+ ...+.++++++++ .|+|++++|...
T Consensus 3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~ 78 (344)
T 3mz0_A 3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGPA 78 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGGG
T ss_pred EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCchh
Confidence 47999999999999999998 5 478866 678876433211 1123 4567899999987 899999999653
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0061 Score=59.20 Aligned_cols=95 Identities=15% Similarity=0.123 Sum_probs=61.3
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCC-CEEEEECCCCCCCCccccCCc-------eecCCHHhhhcCCcEEEEcccCChh
Q 007040 161 RGLVLGIVG-RSASARALATRSLSFK-MSVLYFDVPEGKGKVTFPSAA-------RRMDTLNDLLAASDVISLHCAVTDE 231 (620)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafG-~~V~~~dr~~~~~~~~~~~g~-------~~~~sL~eLL~~sDvVil~lPlT~~ 231 (620)
..++|.|.| .|.||+.+++.|...| ++|++++|+..........++ ...+++.+++..+|+|+.+......
T Consensus 22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~~~~ 101 (236)
T 3qvo_A 22 HMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGEDL 101 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCSTTH
T ss_pred cccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCCCch
Confidence 457899999 7999999999999999 899999988644332111111 1223466778899999988765432
Q ss_pred hHhhcCHHHhhccCC--CcEEEEcCCCh
Q 007040 232 TIQIINAECLQHIKP--GAFLVNTGSSQ 257 (620)
Q Consensus 232 T~~lI~~~~L~~MK~--gAiLINvgRG~ 257 (620)
. ......+..|+. ...||+++...
T Consensus 102 ~--~~~~~~~~~~~~~~~~~iV~iSS~~ 127 (236)
T 3qvo_A 102 D--IQANSVIAAMKACDVKRLIFVLSLG 127 (236)
T ss_dssp H--HHHHHHHHHHHHTTCCEEEEECCCC
T ss_pred h--HHHHHHHHHHHHcCCCEEEEEecce
Confidence 1 111233444422 23677777643
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0033 Score=65.72 Aligned_cols=67 Identities=12% Similarity=0.156 Sum_probs=50.9
Q ss_pred cEEEEEeCChhhHH-HHHHHhhC-CCEEE-EECCCCCCCCccccCCceecCCHHhhhcC--CcEEEEcccCCh
Q 007040 163 LVLGIVGRSASARA-LATRSLSF-KMSVL-YFDVPEGKGKVTFPSAARRMDTLNDLLAA--SDVISLHCAVTD 230 (620)
Q Consensus 163 ktVGIIGlG~IG~~-vA~~Lkaf-G~~V~-~~dr~~~~~~~~~~~g~~~~~sL~eLL~~--sDvVil~lPlT~ 230 (620)
.+|||||+|.||+. .+..++.. +++|. ++|++.......+ .+...+.+++++++. .|+|++++|...
T Consensus 6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~-~~~~~~~~~~~ll~~~~vD~V~i~tp~~~ 77 (362)
T 3fhl_A 6 IKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSKERY-PQASIVRSFKELTEDPEIDLIVVNTPDNT 77 (362)
T ss_dssp EEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGGTTC-TTSEEESCSHHHHTCTTCCEEEECSCGGG
T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHHhC-CCCceECCHHHHhcCCCCCEEEEeCChHH
Confidence 57999999999997 77777766 78875 6788765432222 145667899999987 899999999653
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0023 Score=66.90 Aligned_cols=69 Identities=20% Similarity=0.309 Sum_probs=52.1
Q ss_pred CcEEEEEeCChhhHHHHHHHh-h-CCCEEE-EECCCCCCCCccc-cCC--ceecCCHHhhhcC--CcEEEEcccCCh
Q 007040 162 GLVLGIVGRSASARALATRSL-S-FKMSVL-YFDVPEGKGKVTF-PSA--ARRMDTLNDLLAA--SDVISLHCAVTD 230 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lk-a-fG~~V~-~~dr~~~~~~~~~-~~g--~~~~~sL~eLL~~--sDvVil~lPlT~ 230 (620)
-.+|||||+|.||+..++.+. . -+++|. ++|++........ ..+ ...+.++++++.. .|+|++++|...
T Consensus 23 ~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~ 99 (357)
T 3ec7_A 23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASNEA 99 (357)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCGGG
T ss_pred eeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCcHH
Confidence 357999999999999999998 5 478876 6898875433111 123 4567899999984 899999999654
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0082 Score=62.08 Aligned_cols=94 Identities=16% Similarity=0.194 Sum_probs=59.7
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCCcc-----c-cCCceecCCHHhhhcCCcEEEEcccCC----
Q 007040 162 GLVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGKVT-----F-PSAARRMDTLNDLLAASDVISLHCAVT---- 229 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~--~V~~~dr~~~~~~~~-----~-~~g~~~~~sL~eLL~~sDvVil~lPlT---- 229 (620)
.++|+|||.|.||..+|..+...|+ +|..+|......... . ...+....++ +.++.||+|+++....
T Consensus 14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t~d~-~~l~~aD~Vi~aag~~~pG~ 92 (303)
T 2i6t_A 14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL-SASAHSKVVIFTVNSLGSSQ 92 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEESCG-GGGTTCSEEEECCCC----C
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEeCCH-HHHCCCCEEEEcCCCCCCCC
Confidence 3789999999999999999987788 999999876411100 0 0123333567 6689999999997321
Q ss_pred ------hhhHhhcC--HHHhhccCCCcEEEEcCCC
Q 007040 230 ------DETIQIIN--AECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 230 ------~~T~~lI~--~~~L~~MK~gAiLINvgRG 256 (620)
.++..++- ...+....|+++||+++-.
T Consensus 93 tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sNP 127 (303)
T 2i6t_A 93 SYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQP 127 (303)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSSS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCCh
Confidence 11222221 1123333589999998773
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0031 Score=64.29 Aligned_cols=67 Identities=9% Similarity=0.099 Sum_probs=48.0
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcccc-CCceecCCHHhhhcCCcEEEEcccCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFP-SAARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~~-~g~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
.++++.|||.|.+|++++..|...|+ +|++++|+......... .+......+. +..+|+||+++|..
T Consensus 118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~--~~~~DivInaTp~g 186 (271)
T 1npy_A 118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIG 186 (271)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTT
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhh--cccCCEEEECCCCC
Confidence 46789999999999999999999998 89999998643221110 0111111222 46899999999976
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0084 Score=62.69 Aligned_cols=95 Identities=16% Similarity=0.326 Sum_probs=62.9
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC-------cc-----ccCCceecCCHHhhhcCCcEEEEccc
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK-------VT-----FPSAARRMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~-------~~-----~~~g~~~~~sL~eLL~~sDvVil~lP 227 (620)
..++|+|||.|.+|..+|..|...|+ +|..||+...... .. ....+....+. +.+..||+|+++.+
T Consensus 6 ~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~aDiVIiaag 84 (324)
T 3gvi_A 6 ARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGADVVIVTAG 84 (324)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTCSEEEECCS
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCCCEEEEccC
Confidence 46789999999999999999998888 9999999874321 00 01122223455 78899999999975
Q ss_pred CC--hh-h--------HhhcC--HHHhhccCCCcEEEEcCCC
Q 007040 228 VT--DE-T--------IQIIN--AECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 228 lT--~~-T--------~~lI~--~~~L~~MK~gAiLINvgRG 256 (620)
.. +. | ..++- ...+....|++++|+++-.
T Consensus 85 ~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtNP 126 (324)
T 3gvi_A 85 VPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNP 126 (324)
T ss_dssp CCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred cCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCCC
Confidence 32 11 1 11111 1233344689999998854
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0028 Score=69.28 Aligned_cols=106 Identities=14% Similarity=0.196 Sum_probs=70.9
Q ss_pred cCcEEEEEeCChh--hHHHHHHHhh----CCCEEEEECCCCCCCC------c---cccCCceecCCHHhhhcCCcEEEEc
Q 007040 161 RGLVLGIVGRSAS--ARALATRSLS----FKMSVLYFDVPEGKGK------V---TFPSAARRMDTLNDLLAASDVISLH 225 (620)
Q Consensus 161 ~GktVGIIGlG~I--G~~vA~~Lka----fG~~V~~~dr~~~~~~------~---~~~~g~~~~~sL~eLL~~sDvVil~ 225 (620)
..++|+|||.|.+ |..++..+.. .| +|..||+.....+ . .....+....+++++++.||+|+++
T Consensus 4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI~a 82 (450)
T 3fef_A 4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIIS 82 (450)
T ss_dssp CCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEEEC
T ss_pred CCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEEec
Confidence 3578999999998 4788877764 46 9999998753211 0 0111234567899999999999999
Q ss_pred ccCC-----------hhhHhhcCH------------------------HHhhccCCCcEEEEcCCChhhcHHHHHHH
Q 007040 226 CAVT-----------DETIQIINA------------------------ECLQHIKPGAFLVNTGSSQLLDDCAVKQL 267 (620)
Q Consensus 226 lPlT-----------~~T~~lI~~------------------------~~L~~MK~gAiLINvgRG~vVDe~AL~~A 267 (620)
++.. |.-.|+... +.+....|++++||++-.-=+-..++.+.
T Consensus 83 irvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tNPvdi~t~~~~k~ 159 (450)
T 3fef_A 83 ILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKV 159 (450)
T ss_dssp CCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHH
T ss_pred cccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHHHHH
Confidence 9743 223333211 23445568999999988665555555544
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.012 Score=54.76 Aligned_cols=68 Identities=10% Similarity=0.099 Sum_probs=49.6
Q ss_pred CcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCce-------ecCCHHhhhcCCcEEEEcccCC
Q 007040 162 GLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR-------RMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 162 GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~-------~~~sL~eLL~~sDvVil~lPlT 229 (620)
+++|.|+|. |.||+.+++.|...|++|++++|+..........++. ..+++.++++.+|+|+.+....
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~ 78 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTR 78 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCT
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECccCC
Confidence 478999997 9999999999999999999999876433211111111 1234667788899999888754
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0067 Score=57.98 Aligned_cols=91 Identities=10% Similarity=0.100 Sum_probs=61.1
Q ss_pred cEEEEEe-CChhhHHHHHHHh-hCCCEEEEECCCCC-CCCcc--ccCCc-------eecCCHHhhhcCCcEEEEcccCCh
Q 007040 163 LVLGIVG-RSASARALATRSL-SFKMSVLYFDVPEG-KGKVT--FPSAA-------RRMDTLNDLLAASDVISLHCAVTD 230 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~Lk-afG~~V~~~dr~~~-~~~~~--~~~g~-------~~~~sL~eLL~~sDvVil~lPlT~ 230 (620)
+++.|.| .|.||+.+++.|. ..|++|++++|+.. ..... ...++ ...+++.+++..+|+|+.+.....
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~~n 85 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMESG 85 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCCCH
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCCCC
Confidence 5699999 6999999999999 89999999998865 32211 11111 122356678899999999987642
Q ss_pred hhHhhcCHHHhhccCC-C-cEEEEcCCCh
Q 007040 231 ETIQIINAECLQHIKP-G-AFLVNTGSSQ 257 (620)
Q Consensus 231 ~T~~lI~~~~L~~MK~-g-AiLINvgRG~ 257 (620)
-. ....+..|+. + ..||+++...
T Consensus 86 ~~----~~~~~~~~~~~~~~~iv~iSs~~ 110 (221)
T 3r6d_A 86 SD----MASIVKALSRXNIRRVIGVSMAG 110 (221)
T ss_dssp HH----HHHHHHHHHHTTCCEEEEEEETT
T ss_pred hh----HHHHHHHHHhcCCCeEEEEeece
Confidence 11 3444555532 2 3688887544
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0081 Score=62.95 Aligned_cols=97 Identities=13% Similarity=0.141 Sum_probs=62.6
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC---------ccccCCceecCCHHhhhcCCcEEEEcccC
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK---------VTFPSAARRMDTLNDLLAASDVISLHCAV 228 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~--~V~~~dr~~~~~~---------~~~~~g~~~~~sL~eLL~~sDvVil~lPl 228 (620)
-.+++|+|||.|.||..+|..|...|+ +|..+|....... ..+........+..+.+..||+|+++...
T Consensus 7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag~ 86 (326)
T 3vku_A 7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAGA 86 (326)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCCC
Confidence 367889999999999999999987777 9999998653111 01111222233445778999999998754
Q ss_pred Ch---hhHh-hc--C-------HHHhhccCCCcEEEEcCCC
Q 007040 229 TD---ETIQ-II--N-------AECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 229 T~---~T~~-lI--~-------~~~L~~MK~gAiLINvgRG 256 (620)
.. .|+. ++ | .+.+....|++++++++-.
T Consensus 87 ~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtNP 127 (326)
T 3vku_A 87 PQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANP 127 (326)
T ss_dssp C----------------CHHHHHHHHHTTTCCSEEEECSSS
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccCc
Confidence 22 1221 22 1 1244455789999999753
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0066 Score=62.93 Aligned_cols=96 Identities=13% Similarity=0.157 Sum_probs=61.6
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC----------ccccCCceecCCHHhhhcCCcEEEEcccC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK----------VTFPSAARRMDTLNDLLAASDVISLHCAV 228 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~--~V~~~dr~~~~~~----------~~~~~g~~~~~sL~eLL~~sDvVil~lPl 228 (620)
..++|+|||.|.+|..+|..|...|. +|..||....... ...........+..+.+..||+|+++.+.
T Consensus 5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ag~ 84 (317)
T 3d0o_A 5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGA 84 (317)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECCCC
Confidence 34689999999999999999987675 9999998652111 00001111112446778999999999875
Q ss_pred Chh---hH--------hhcC--HHHhhccCCCcEEEEcCCC
Q 007040 229 TDE---TI--------QIIN--AECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 229 T~~---T~--------~lI~--~~~L~~MK~gAiLINvgRG 256 (620)
... ++ .++- .+.+....|++++|+++-.
T Consensus 85 ~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNP 125 (317)
T 3d0o_A 85 AQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNP 125 (317)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSS
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCc
Confidence 421 11 1211 1233444789999997643
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0018 Score=69.89 Aligned_cols=93 Identities=16% Similarity=0.119 Sum_probs=63.8
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCc--e-----ecCCHHhh-hcCCcEEEEcccCChhhH
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA--R-----RMDTLNDL-LAASDVISLHCAVTDETI 233 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~--~-----~~~sL~eL-L~~sDvVil~lPlT~~T~ 233 (620)
+.+|.|+|+|++|+.+|+.|...|+.|+++|.++.........+. . ..+.|.++ +.++|+|+++++....+.
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~n~ 83 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNL 83 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHHHH
Confidence 456999999999999999999999999999988643321111121 1 12234444 678999999999754443
Q ss_pred hhcCHHHhhccCCCcEEEEcCCC
Q 007040 234 QIINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgRG 256 (620)
. -......+.|...+|--++.
T Consensus 84 ~--i~~~ar~~~p~~~Iiara~~ 104 (413)
T 3l9w_A 84 Q--LTEMVKEHFPHLQIIARARD 104 (413)
T ss_dssp H--HHHHHHHHCTTCEEEEEESS
T ss_pred H--HHHHHHHhCCCCeEEEEECC
Confidence 3 34556677788666655443
|
| >3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A | Back alignment and structure |
|---|
Probab=96.27 E-value=0.062 Score=55.84 Aligned_cols=92 Identities=18% Similarity=0.211 Sum_probs=66.8
Q ss_pred ecCcEEEEEeCC---hhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCCh------
Q 007040 160 CRGLVLGIVGRS---ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTD------ 230 (620)
Q Consensus 160 L~GktVGIIGlG---~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~------ 230 (620)
+.|.+|++||=| ++..+++..+..||++|.+..|..-... ....+ ...+++++++.+|||..-.-..+
T Consensus 145 l~glkva~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~-~~~~g--~~~d~~eav~~aDvvyt~~~q~er~~~~~ 221 (304)
T 3r7f_A 145 FKGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDE-ENTFG--TYVSMDEAVESSDVVMLLRIQNERHQSAV 221 (304)
T ss_dssp CTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCT-TCSSC--EECCHHHHHHHCSEEEECCCCTTTCCSSC
T ss_pred CCCCEEEEEcCCCCcchHHHHHHHHHHcCCEEEEECCCccCcc-hhhcC--ccCCHHHHhCCCCEEEeccchhhccccch
Confidence 689999999975 6999999999999999999988642222 11112 34689999999999988431111
Q ss_pred ---h--hHhhcCHHHhhccCCCcEEEEcC
Q 007040 231 ---E--TIQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 231 ---~--T~~lI~~~~L~~MK~gAiLINvg 254 (620)
+ ..--++.+.++.+|++++|.-+.
T Consensus 222 ~~~~~~~~y~v~~~~l~~a~~~ai~mHcl 250 (304)
T 3r7f_A 222 SQEGYLNKYGLTVERAERMKRHAIIMHPA 250 (304)
T ss_dssp CSTTHHHHHSBCHHHHTTSCTTCEEECCS
T ss_pred hHHHHhCCCccCHHHHhhcCCCCEEECCC
Confidence 1 12236888888888888887653
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.002 Score=70.52 Aligned_cols=107 Identities=13% Similarity=0.077 Sum_probs=66.8
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhC-CCEEEEECCCCCCCCcccc-CCce--e-----cCCHHhhhcCCcEEEEcccCC
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSF-KMSVLYFDVPEGKGKVTFP-SAAR--R-----MDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~Lkaf-G~~V~~~dr~~~~~~~~~~-~g~~--~-----~~sL~eLL~~sDvVil~lPlT 229 (620)
.+.+++|+|+|.|.||+.++..|... |++|.+++|+......... .++. . .+++.+++..+|+|++++|..
T Consensus 20 ~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp~~ 99 (467)
T 2axq_A 20 RHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLIPYT 99 (467)
T ss_dssp ---CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECSCGG
T ss_pred CCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECCchh
Confidence 57889999999999999999999987 7899999998643221110 1111 1 124667788999999999965
Q ss_pred hhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcC
Q 007040 230 DETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDG 271 (620)
Q Consensus 230 ~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G 271 (620)
-. .-+. ...++.|..+++++--. -+..+|.++.++.
T Consensus 100 ~~--~~v~---~a~l~~g~~vvd~~~~~-p~~~~Ll~~Ak~a 135 (467)
T 2axq_A 100 FH--PNVV---KSAIRTKTDVVTSSYIS-PALRELEPEIVKA 135 (467)
T ss_dssp GH--HHHH---HHHHHHTCEEEECSCCC-HHHHHHHHHHHHH
T ss_pred hh--HHHH---HHHHhcCCEEEEeecCC-HHHHHHHHHHHHc
Confidence 22 1121 22345677888775311 1234555555443
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=96.25 E-value=0.011 Score=60.63 Aligned_cols=107 Identities=13% Similarity=0.070 Sum_probs=70.9
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCCEEE-EECCCCCCCCccccCCceecCCHHhhhc--CCcEEEEcccCChhhHhhc
Q 007040 161 RGLVLGIVGR-SASARALATRSLSFKMSVL-YFDVPEGKGKVTFPSAARRMDTLNDLLA--ASDVISLHCAVTDETIQII 236 (620)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafG~~V~-~~dr~~~~~~~~~~~g~~~~~sL~eLL~--~sDvVil~lPlT~~T~~lI 236 (620)
..++|+|+|+ |++|+.+++.++..|++++ .++|... .. ...+...+.+++++.. ..|++++++|.. .+..++
T Consensus 6 ~~~~VaVvGasG~~G~~~~~~l~~~g~~~v~~VnP~~~-g~--~i~G~~vy~sl~el~~~~~~Dv~Ii~vp~~-~~~~~~ 81 (288)
T 1oi7_A 6 RETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKG-GM--EVLGVPVYDTVKEAVAHHEVDASIIFVPAP-AAADAA 81 (288)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCT-TC--EETTEEEESSHHHHHHHSCCSEEEECCCHH-HHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHcCCeEEEEECCCCC-Cc--eECCEEeeCCHHHHhhcCCCCEEEEecCHH-HHHHHH
Confidence 3567999999 9999999999998899854 6676642 11 1246667788999998 899999999943 333333
Q ss_pred CHHHhhccCCCcEEEEcCCC-hhhcHHHHHHHHHcCCcc
Q 007040 237 NAECLQHIKPGAFLVNTGSS-QLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 237 ~~~~L~~MK~gAiLINvgRG-~vVDe~AL~~AL~~G~I~ 274 (620)
. +.++.=.+. +|..+.| ...+++.|.++.++..+.
T Consensus 82 ~-ea~~~Gi~~--vVi~t~G~~~~~~~~l~~~a~~~gi~ 117 (288)
T 1oi7_A 82 L-EAAHAGIPL--IVLITEGIPTLDMVRAVEEIKALGSR 117 (288)
T ss_dssp H-HHHHTTCSE--EEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred H-HHHHCCCCE--EEEECCCCCHHHHHHHHHHHHHcCCE
Confidence 2 233322222 3334444 234566788888776553
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0086 Score=62.68 Aligned_cols=96 Identities=9% Similarity=0.102 Sum_probs=62.4
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC-------cccc---CCceecCCHHhhhcCCcEEEEcccC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK-------VTFP---SAARRMDTLNDLLAASDVISLHCAV 228 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~--~V~~~dr~~~~~~-------~~~~---~g~~~~~sL~eLL~~sDvVil~lPl 228 (620)
..++|+|||.|.||..+|..|...|+ +|..+|....... ...+ ..+....+..+.+..||+|+++.+.
T Consensus 4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag~ 83 (326)
T 3pqe_A 4 HVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGA 83 (326)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEeccc
Confidence 35689999999999999999988787 9999998653211 0011 1122222334678999999999864
Q ss_pred C--h-hhH-hhc--C-------HHHhhccCCCcEEEEcCCC
Q 007040 229 T--D-ETI-QII--N-------AECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 229 T--~-~T~-~lI--~-------~~~L~~MK~gAiLINvgRG 256 (620)
. + .++ .++ | .+.+....|++++|+++-.
T Consensus 84 p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtNP 124 (326)
T 3pqe_A 84 NQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNP 124 (326)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSS
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCCh
Confidence 2 1 111 111 1 1234445789999999854
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0043 Score=65.23 Aligned_cols=95 Identities=18% Similarity=0.119 Sum_probs=63.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC---------cccc--CCceecCCHHhhhcCCcEEEEccc
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK---------VTFP--SAARRMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~--~V~~~dr~~~~~~---------~~~~--~g~~~~~sL~eLL~~sDvVil~lP 227 (620)
..++|+|||.|.||..+|..+...|+ +|..+|....... ..+. ..+....++++ +++||+|+++..
T Consensus 20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIitaG 98 (330)
T 3ldh_A 20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVITAG 98 (330)
T ss_dssp CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEECCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEEeCC
Confidence 56899999999999999999988787 9999998653211 0111 11223446665 899999999865
Q ss_pred CCh-----------hhHhhcC--HHHhhccCCCcEEEEcCCC
Q 007040 228 VTD-----------ETIQIIN--AECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 228 lT~-----------~T~~lI~--~~~L~~MK~gAiLINvgRG 256 (620)
... .+..++. .+.+....|++++|+++-.
T Consensus 99 ~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtNP 140 (330)
T 3ldh_A 99 ARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPEL 140 (330)
T ss_dssp CCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred CCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCCc
Confidence 321 1222221 1244455899999999853
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0034 Score=65.74 Aligned_cols=91 Identities=15% Similarity=0.122 Sum_probs=64.0
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-cCCce---ecCC---HHhhhcCCcEEEEcccCChhhH
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF-PSAAR---RMDT---LNDLLAASDVISLHCAVTDETI 233 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~-~~g~~---~~~s---L~eLL~~sDvVil~lPlT~~T~ 233 (620)
.|.+|.|+|.|.||..+++.++.+|++|++++++........ ..|.. ...+ +.++....|+|+.++.....
T Consensus 187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g~~~~-- 264 (366)
T 1yqd_A 187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAVHP-- 264 (366)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCSSCCC--
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCCcHHH--
Confidence 688999999999999999999999999999998764432211 22321 1122 33344568999988875422
Q ss_pred hhcCHHHhhccCCCcEEEEcCCC
Q 007040 234 QIINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgRG 256 (620)
-...+..|+++..+|++|..
T Consensus 265 ---~~~~~~~l~~~G~iv~~g~~ 284 (366)
T 1yqd_A 265 ---LLPLFGLLKSHGKLILVGAP 284 (366)
T ss_dssp ---SHHHHHHEEEEEEEEECCCC
T ss_pred ---HHHHHHHHhcCCEEEEEccC
Confidence 23567778888889988753
|
| >2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.033 Score=57.87 Aligned_cols=95 Identities=13% Similarity=0.054 Sum_probs=70.9
Q ss_pred ecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccC--CceecCCHHhhhcCCcEEEEcccCC------h
Q 007040 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPS--AARRMDTLNDLLAASDVISLHCAVT------D 230 (620)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~--g~~~~~sL~eLL~~sDvVil~lPlT------~ 230 (620)
+.|.+|+|||= +++..+++..+..||++|.+..|..-......-. .+....++++.++.+|||..-.=.. .
T Consensus 152 l~gl~ia~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~~~smg~~~~~ 231 (301)
T 2ef0_A 152 LAGLEVAWVGDGNNVLNSLLEVAPLAGLKVRVATPKGYEPDPGLLKRANAFFTHDPKEAALGAHALYTDVWTSMGQEAER 231 (301)
T ss_dssp CTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHTCEEESCHHHHHTTCSEEEECCCC--------
T ss_pred cCCcEEEEECCCchhHHHHHHHHHHcCCEEEEECCchhcCCHHHHhhceeEEECCHHHHhcCCCEEEecCcccCCcccch
Confidence 68999999998 8999999999999999999999875433211100 1445679999999999999843210 1
Q ss_pred hh------HhhcCHHHhhccCCCcEEEEcC
Q 007040 231 ET------IQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 231 ~T------~~lI~~~~L~~MK~gAiLINvg 254 (620)
.. ..-++.+.++.+||+++|.-+.
T Consensus 232 ~~~~~~~~~y~v~~e~l~~a~~~ai~mHpl 261 (301)
T 2ef0_A 232 EKRLRDFQGFQVNGELLKLLRPEGVFLHCL 261 (301)
T ss_dssp CHHHHHTTTCCBCHHHHTTSCTTCEEEECS
T ss_pred hHHHHHhhccccCHHHHHhcCCCcEEECCC
Confidence 11 1246889999999999999886
|
| >4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.063 Score=55.93 Aligned_cols=95 Identities=12% Similarity=0.157 Sum_probs=67.1
Q ss_pred ecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-----cCCceecCCHHhhhcCCcEEEEcc----cC-
Q 007040 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTF-----PSAARRMDTLNDLLAASDVISLHC----AV- 228 (620)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~-----~~g~~~~~sL~eLL~~sDvVil~l----Pl- 228 (620)
+.|.+|+|||= +++..+++..+..||++|.+..|..-.....+ ...+....++++.++.+|||..-+ ..
T Consensus 152 l~glkva~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt~~w~smg~e 231 (309)
T 4f2g_A 152 IRGKTVAWVGDANNMLYTWIQAARILDFKLQLSTPPGYALDAKLVDAESAPFYQVFDDPNEACKGADLVTTDVWTSMGFE 231 (309)
T ss_dssp CTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCGGGCCCGGGSCGGGGGGEEECSSHHHHTTTCSEEEECCC------
T ss_pred CCCCEEEEECCCcchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHcCCeEEEEcCHHHHhcCCCEEEecccccCcch
Confidence 68999999986 57788888889999999999998642222111 113345679999999999999744 11
Q ss_pred --Chh-----hHhhcCHHHhhccCCCcEEEEcC
Q 007040 229 --TDE-----TIQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 229 --T~~-----T~~lI~~~~L~~MK~gAiLINvg 254 (620)
.++ ...-++.+.++.+|++++|.-+.
T Consensus 232 ~~~~~r~~~~~~y~v~~~~l~~a~~~ai~mH~l 264 (309)
T 4f2g_A 232 AENEARKRAFADWCVDEEMMSHANSDALFMHCL 264 (309)
T ss_dssp ------CCSGGGGCBCHHHHTTSCTTCEEEECS
T ss_pred hhHHHHHHHhcCceeCHHHHHhcCCCeEEECCC
Confidence 000 12346888888888888888764
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0057 Score=60.86 Aligned_cols=92 Identities=18% Similarity=0.075 Sum_probs=57.3
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-cC-Ccee-cCC-HHhhhcCCcEEEEcccCChhh
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF-PS-AARR-MDT-LNDLLAASDVISLHCAVTDET 232 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~-~~-g~~~-~~s-L~eLL~~sDvVil~lPlT~~T 232 (620)
+.++.|++|.|||.|.+|...++.|...|++|+++++......... .. .+.. ... .++.+..+|+|+.+.... +.
T Consensus 26 fl~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT~d~-~~ 104 (223)
T 3dfz_A 26 MLDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVATNDQ-AV 104 (223)
T ss_dssp EECCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECCCCT-HH
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECCCCH-HH
Confidence 3579999999999999999999999999999999998653211000 01 1111 011 234567788888665433 32
Q ss_pred HhhcCHHHhhccCCCcEEEEcC
Q 007040 233 IQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 233 ~~lI~~~~L~~MK~gAiLINvg 254 (620)
|.......+ --++||+.
T Consensus 105 ----N~~I~~~ak-~gi~VNvv 121 (223)
T 3dfz_A 105 ----NKFVKQHIK-NDQLVNMA 121 (223)
T ss_dssp ----HHHHHHHSC-TTCEEEC-
T ss_pred ----HHHHHHHHh-CCCEEEEe
Confidence 222233334 45667753
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.005 Score=60.90 Aligned_cols=66 Identities=15% Similarity=0.150 Sum_probs=44.3
Q ss_pred cEEEEEeCChhhHHHHHH--HhhCCCEEE-EECCCCCCCCccc-cCCceecCCHHhhhcCCcEEEEcccC
Q 007040 163 LVLGIVGRSASARALATR--SLSFKMSVL-YFDVPEGKGKVTF-PSAARRMDTLNDLLAASDVISLHCAV 228 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~--LkafG~~V~-~~dr~~~~~~~~~-~~g~~~~~sL~eLL~~sDvVil~lPl 228 (620)
.+++|||.|++|+.+|+. ....|++|. ++|.++....... ...+...+++++++++.|+|++++|.
T Consensus 86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli~~~D~ViIAvPs 155 (215)
T 2vt3_A 86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILTVPA 155 (215)
T ss_dssp -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHHHHCSSCCEEEECSCH
T ss_pred CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHHHHHHhCCEEEEecCc
Confidence 469999999999999994 345688655 6687765433211 11233467899999777999999995
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0037 Score=64.43 Aligned_cols=68 Identities=12% Similarity=0.078 Sum_probs=49.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC---CEEE-EECCCCCCCCcc-ccCCc-eecCCHHhhhc--CCcEEEEcccCCh
Q 007040 163 LVLGIVGRSASARALATRSLSFK---MSVL-YFDVPEGKGKVT-FPSAA-RRMDTLNDLLA--ASDVISLHCAVTD 230 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG---~~V~-~~dr~~~~~~~~-~~~g~-~~~~sL~eLL~--~sDvVil~lPlT~ 230 (620)
.++||||+|.||+..++.++..+ ++|. ++|++....... ...++ ..+.+++++++ +.|+|++++|...
T Consensus 3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~ 78 (334)
T 3ohs_X 3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQ 78 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCGGG
T ss_pred cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHH
Confidence 47999999999999999998664 4544 678875432211 11233 35679999998 5899999999653
|
| >1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.056 Score=56.02 Aligned_cols=95 Identities=13% Similarity=0.191 Sum_probs=69.8
Q ss_pred ecCcEEEEEeC---ChhhHHHHHHHhhC-CCEEEEECCCCCCCCcc--ccCC--ceecCCHHhhhcCCcEEEEcccCCh-
Q 007040 160 CRGLVLGIVGR---SASARALATRSLSF-KMSVLYFDVPEGKGKVT--FPSA--ARRMDTLNDLLAASDVISLHCAVTD- 230 (620)
Q Consensus 160 L~GktVGIIGl---G~IG~~vA~~Lkaf-G~~V~~~dr~~~~~~~~--~~~g--~~~~~sL~eLL~~sDvVil~lPlT~- 230 (620)
+.|.+|++||= |++..+++..+..| |++|.+..|..-..... ...| +....+++++++.+|||..-.=..+
T Consensus 147 l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q~er 226 (299)
T 1pg5_A 147 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKER 226 (299)
T ss_dssp STTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCSTT
T ss_pred cCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCchhcCCHHHHHHcCCeEEEeCCHHHHhcCCCEEEeCCccccc
Confidence 68999999998 59999999999999 99999999865322211 1122 3345789999999999988654331
Q ss_pred -----hh-----HhhcCHHHhhccCCCcEEEEcC
Q 007040 231 -----ET-----IQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 231 -----~T-----~~lI~~~~L~~MK~gAiLINvg 254 (620)
+- .--++.+.++.+||+++|.-+.
T Consensus 227 ~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~l 260 (299)
T 1pg5_A 227 FVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPL 260 (299)
T ss_dssp SSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCS
T ss_pred ccCHHHHHHhhcCcccCHHHHHhcCCCCEEECCC
Confidence 11 1245788888888888887763
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0043 Score=67.53 Aligned_cols=69 Identities=12% Similarity=-0.030 Sum_probs=49.6
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc-C-Cc-------eecCCHHhhhcCCcEEEEcccCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP-S-AA-------RRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~-~-g~-------~~~~sL~eLL~~sDvVil~lPlT 229 (620)
.+++|+|+|.|.||+.+|+.|...|++|.+++++......... . +. ...+++.+++..+|+|++++|..
T Consensus 2 ~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~ 79 (450)
T 1ff9_A 2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYT 79 (450)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccc
Confidence 3678999999999999999999999999999987532221110 0 11 11124567888999999999964
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0023 Score=68.91 Aligned_cols=106 Identities=9% Similarity=0.059 Sum_probs=65.0
Q ss_pred cEEEEEeCChhhH-HHHHHHhhC-CCEE-EEECCCCCCCCccc-cCCc-----eecCCHHhhhc--CCcEEEEcccCChh
Q 007040 163 LVLGIVGRSASAR-ALATRSLSF-KMSV-LYFDVPEGKGKVTF-PSAA-----RRMDTLNDLLA--ASDVISLHCAVTDE 231 (620)
Q Consensus 163 ktVGIIGlG~IG~-~vA~~Lkaf-G~~V-~~~dr~~~~~~~~~-~~g~-----~~~~sL~eLL~--~sDvVil~lPlT~~ 231 (620)
.+|||||+|.||+ .+++.+... +++| .++|++........ ..++ ..+.++++++. +.|+|++++|....
T Consensus 84 irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~~~h 163 (433)
T 1h6d_A 84 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLH 163 (433)
T ss_dssp EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGGH
T ss_pred eEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCchhH
Confidence 5799999999997 899998875 6775 57888764322111 1122 24678999997 78999999996533
Q ss_pred hHhhcCHHHhhccCCCc-EEEEc-CCChhhcHHHHHHHHHcCCc
Q 007040 232 TIQIINAECLQHIKPGA-FLVNT-GSSQLLDDCAVKQLLIDGTL 273 (620)
Q Consensus 232 T~~lI~~~~L~~MK~gA-iLINv-gRG~vVDe~AL~~AL~~G~I 273 (620)
... ....++.|. +|+.- ---.+-+.++|.++.++..+
T Consensus 164 ~~~-----~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~ 202 (433)
T 1h6d_A 164 AEF-----AIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANK 202 (433)
T ss_dssp HHH-----HHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTC
T ss_pred HHH-----HHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHhCC
Confidence 221 223344454 45442 12233444556666655443
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.01 Score=65.27 Aligned_cols=114 Identities=16% Similarity=0.260 Sum_probs=73.1
Q ss_pred CcEEEEEeCChh--hHHHHHHHh---hC-CCEEEEECCCCCCCC------------ccccCCceecCCHHhhhcCCcEEE
Q 007040 162 GLVLGIVGRSAS--ARALATRSL---SF-KMSVLYFDVPEGKGK------------VTFPSAARRMDTLNDLLAASDVIS 223 (620)
Q Consensus 162 GktVGIIGlG~I--G~~vA~~Lk---af-G~~V~~~dr~~~~~~------------~~~~~g~~~~~sL~eLL~~sDvVi 223 (620)
.++|+|||.|.+ |.++|..|. ++ |.+|..||+.....+ ......+....++.+.++.||+|+
T Consensus 3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~VI 82 (480)
T 1obb_A 3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI 82 (480)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCEEE
Confidence 468999999997 465566664 33 889999999763211 001122334568888899999999
Q ss_pred EcccCC---------------------hhh----------------Hhhc--CHHHhhccCCCcEEEEcCCChhhcHHHH
Q 007040 224 LHCAVT---------------------DET----------------IQII--NAECLQHIKPGAFLVNTGSSQLLDDCAV 264 (620)
Q Consensus 224 l~lPlT---------------------~~T----------------~~lI--~~~~L~~MK~gAiLINvgRG~vVDe~AL 264 (620)
+++|.. .+| ..++ -.+.+....|+|+|||++-.-=+-..++
T Consensus 83 iaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~t~~~ 162 (480)
T 1obb_A 83 NTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLV 162 (480)
T ss_dssp ECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHHHHHH
T ss_pred ECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH
Confidence 999741 111 0111 0134555679999999988765555666
Q ss_pred HHHHHcCCccee
Q 007040 265 KQLLIDGTLAGC 276 (620)
Q Consensus 265 ~~AL~~G~I~GA 276 (620)
.+ +...++.|.
T Consensus 163 ~k-~p~~rviG~ 173 (480)
T 1obb_A 163 TR-TVPIKAVGF 173 (480)
T ss_dssp HH-HSCSEEEEE
T ss_pred HH-CCCCcEEec
Confidence 55 555566654
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.012 Score=61.23 Aligned_cols=67 Identities=21% Similarity=0.294 Sum_probs=48.3
Q ss_pred cEEEEEeCChhhH-HHHHHHhhC-CCEEE-EECCCCCCCCcccc---CCceecCCHHhhhcC--CcEEEEcccCCh
Q 007040 163 LVLGIVGRSASAR-ALATRSLSF-KMSVL-YFDVPEGKGKVTFP---SAARRMDTLNDLLAA--SDVISLHCAVTD 230 (620)
Q Consensus 163 ktVGIIGlG~IG~-~vA~~Lkaf-G~~V~-~~dr~~~~~~~~~~---~g~~~~~sL~eLL~~--sDvVil~lPlT~ 230 (620)
.+|||||+|.||+ ..+..++.. +++|. ++|++ ........ .++..+.+++++++. .|+|++++|...
T Consensus 3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~-~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~ 77 (349)
T 3i23_A 3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH-VNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPAHT 77 (349)
T ss_dssp EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT-CCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCGGG
T ss_pred eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC-HHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCCcHH
Confidence 4799999999999 577777765 78875 67877 22111001 245667899999986 899999999653
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.014 Score=60.89 Aligned_cols=94 Identities=23% Similarity=0.353 Sum_probs=61.3
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC-------cc-----ccCCceecCCHHhhhcCCcEEEEccc
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK-------VT-----FPSAARRMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~-------~~-----~~~g~~~~~sL~eLL~~sDvVil~lP 227 (620)
..++|+|||.|.||..+|..|...|+ +|..+|....... .. ....+....+ .+.++.||+|+++.+
T Consensus 4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d-~~a~~~aDvVIi~ag 82 (321)
T 3p7m_A 4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTND-YKDLENSDVVIVTAG 82 (321)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESC-GGGGTTCSEEEECCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCC-HHHHCCCCEEEEcCC
Confidence 35789999999999999999987777 9999998874321 00 0111222234 478899999999975
Q ss_pred CC--hh-h--------HhhcC--HHHhhccCCCcEEEEcCC
Q 007040 228 VT--DE-T--------IQIIN--AECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 228 lT--~~-T--------~~lI~--~~~L~~MK~gAiLINvgR 255 (620)
.. +. | ..++- .+.+....|++++|+++-
T Consensus 83 ~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN 123 (321)
T 3p7m_A 83 VPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITN 123 (321)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred cCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 32 11 1 11221 123344458999999964
|
| >1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.059 Score=56.26 Aligned_cols=95 Identities=16% Similarity=0.159 Sum_probs=70.8
Q ss_pred ecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccc---------cCC--ceecCCHHhhhcCCcEEEEccc
Q 007040 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTF---------PSA--ARRMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~---------~~g--~~~~~sL~eLL~~sDvVil~lP 227 (620)
+.|.+|++||= +++..+++..+..||++|.+..|..-.....+ ..| +....++++.++.+|||..-.=
T Consensus 153 l~gl~va~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvy~~~w 232 (315)
T 1pvv_A 153 IKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDVW 232 (315)
T ss_dssp CTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECCC
T ss_pred cCCcEEEEECCCcchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEEcce
Confidence 68999999997 89999999999999999999998653332111 123 3456899999999999998442
Q ss_pred C-------Chhh-----HhhcCHHHhhccCCCcEEEEcC
Q 007040 228 V-------TDET-----IQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 228 l-------T~~T-----~~lI~~~~L~~MK~gAiLINvg 254 (620)
. .++- .--++.+.++.+||+++|.-+.
T Consensus 233 ~smg~~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mH~l 271 (315)
T 1pvv_A 233 ASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCL 271 (315)
T ss_dssp CCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECS
T ss_pred eccCcccchHHHHHHHHhcCCCHHHHhhcCCCcEEECCC
Confidence 1 1111 1346888888889998888764
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.011 Score=56.22 Aligned_cols=66 Identities=14% Similarity=0.105 Sum_probs=48.8
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCc-------eecCCHHhhhcCCcEEEEcccCC
Q 007040 163 LVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA-------RRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~-------~~~~sL~eLL~~sDvVil~lPlT 229 (620)
++|.|.| .|.||+.+++.|...|++|++++|+....... ..++ ...+++.+++..+|+|+.+....
T Consensus 5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~~ 78 (227)
T 3dhn_A 5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIE-NEHLKVKKADVSSLDEVCEVCKGADAVISAFNPG 78 (227)
T ss_dssp CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCC-CTTEEEECCCTTCHHHHHHHHTTCSEEEECCCC-
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhc-cCceEEEEecCCCHHHHHHHhcCCCEEEEeCcCC
Confidence 6799998 69999999999999999999999986443211 1111 12234667888999999887644
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.01 Score=62.56 Aligned_cols=66 Identities=21% Similarity=0.217 Sum_probs=48.5
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCce-----ecCCHHhhhcCCcEEEE
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR-----RMDTLNDLLAASDVISL 224 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~-----~~~sL~eLL~~sDvVil 224 (620)
.+.+++|||||.|.+|+.+++.++.+|++|+++|+++........+... ..+.+.+++..+|+|+.
T Consensus 9 ~~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~ 79 (377)
T 3orq_A 9 LKFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITY 79 (377)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCSEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCCccee
Confidence 3579999999999999999999999999999999876443222221111 11236677888998854
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.011 Score=64.55 Aligned_cols=100 Identities=12% Similarity=0.185 Sum_probs=71.7
Q ss_pred eecCcEEEEEeCC----------hhhHHHHHHHhhCCCEEEEECCCCCCCC-ccccCCceecCCHHhhhcCCcEEEEccc
Q 007040 159 RCRGLVLGIVGRS----------ASARALATRSLSFKMSVLYFDVPEGKGK-VTFPSAARRMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 159 ~L~GktVGIIGlG----------~IG~~vA~~LkafG~~V~~~dr~~~~~~-~~~~~g~~~~~sL~eLL~~sDvVil~lP 227 (620)
.+.|++|+|+|+. .-...|++.|...|++|.+|||...... ..+ .+.....++++.+..+|+|++++.
T Consensus 319 ~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~-~~~~~~~~~~~~~~~ad~vvi~t~ 397 (446)
T 4a7p_A 319 DVRGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGVEQASKML-TDVEFVENPYAAADGADALVIVTE 397 (446)
T ss_dssp CCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCHHHHGGGC-SSCCBCSCHHHHHTTBSEEEECSC
T ss_pred cCCCCEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCCHhHHHhc-CCceEecChhHHhcCCCEEEEeeC
Confidence 4789999999997 6789999999999999999999873211 111 134556788999999999999998
Q ss_pred CChhhHhhcCHHHh-hccCCCcEEEEcCCChhhcHHHH
Q 007040 228 VTDETIQIINAECL-QHIKPGAFLVNTGSSQLLDDCAV 264 (620)
Q Consensus 228 lT~~T~~lI~~~~L-~~MK~gAiLINvgRG~vVDe~AL 264 (620)
..+ - .-++-+.+ +.|+ +.++|++ |+ +.|.+.+
T Consensus 398 ~~~-f-~~~d~~~~~~~~~-~~~i~D~-r~-~~~~~~~ 430 (446)
T 4a7p_A 398 WDA-F-RALDLTRIKNSLK-SPVLVDL-RN-IYPPAEL 430 (446)
T ss_dssp CTT-T-TSCCHHHHHTTBS-SCBEECS-SC-CSCHHHH
T ss_pred CHH-h-hcCCHHHHHHhcC-CCEEEEC-CC-CCCHHHH
Confidence 652 1 22454444 4466 4678884 54 3555544
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0042 Score=64.88 Aligned_cols=68 Identities=13% Similarity=0.165 Sum_probs=50.5
Q ss_pred cEEEEEeCChhhHH-HHHHHhhC-CCEEE-EECCCCCCCCccccCCceecCCHHhhhc--CCcEEEEcccCChh
Q 007040 163 LVLGIVGRSASARA-LATRSLSF-KMSVL-YFDVPEGKGKVTFPSAARRMDTLNDLLA--ASDVISLHCAVTDE 231 (620)
Q Consensus 163 ktVGIIGlG~IG~~-vA~~Lkaf-G~~V~-~~dr~~~~~~~~~~~g~~~~~sL~eLL~--~sDvVil~lPlT~~ 231 (620)
.+|||||+|.||+. .+..++.. +++|. ++|++.......+ .+...+.+++++++ +.|+|++++|....
T Consensus 6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~-~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H 78 (358)
T 3gdo_A 6 IKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKRDF-PDAEVVHELEEITNDPAIELVIVTTPSGLH 78 (358)
T ss_dssp EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHHHHC-TTSEEESSTHHHHTCTTCCEEEECSCTTTH
T ss_pred ceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhhC-CCCceECCHHHHhcCCCCCEEEEcCCcHHH
Confidence 47999999999997 68878766 78875 6687763321112 24556789999998 68999999997643
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.011 Score=55.64 Aligned_cols=94 Identities=12% Similarity=0.129 Sum_probs=58.0
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCce-ecCCHH----hhhcCCcEEEEcccCChhhHh--
Q 007040 163 LVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR-RMDTLN----DLLAASDVISLHCAVTDETIQ-- 234 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~-~~~sL~----eLL~~sDvVil~lPlT~~T~~-- 234 (620)
++|.|+| .|.||+.+++.|...|++|++++|+........ .++. ...++. +.+..+|+|+.+.........
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~~ 79 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH-KDINILQKDIFDLTLSDLSDQNVVVDAYGISPDEAEKH 79 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC-SSSEEEECCGGGCCHHHHTTCSEEEECCCSSTTTTTSH
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc-CCCeEEeccccChhhhhhcCCCEEEECCcCCccccchH
Confidence 4689999 599999999999999999999999864322100 1111 011111 677889999998876533211
Q ss_pred -hcCHHHhhccCC--CcEEEEcCCCh
Q 007040 235 -IINAECLQHIKP--GAFLVNTGSSQ 257 (620)
Q Consensus 235 -lI~~~~L~~MK~--gAiLINvgRG~ 257 (620)
......+..|+. ...+|+++...
T Consensus 80 ~~~~~~l~~a~~~~~~~~~v~~SS~~ 105 (221)
T 3ew7_A 80 VTSLDHLISVLNGTVSPRLLVVGGAA 105 (221)
T ss_dssp HHHHHHHHHHHCSCCSSEEEEECCCC
T ss_pred HHHHHHHHHHHHhcCCceEEEEecce
Confidence 111234444443 35666666543
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0078 Score=66.09 Aligned_cols=106 Identities=11% Similarity=0.167 Sum_probs=67.7
Q ss_pred CcEEEEEeCChh-hHHHHHHHhhC-----CCEEEEECCCCCCCC------------ccccCCceecCCHHhhhcCCcEEE
Q 007040 162 GLVLGIVGRSAS-ARALATRSLSF-----KMSVLYFDVPEGKGK------------VTFPSAARRMDTLNDLLAASDVIS 223 (620)
Q Consensus 162 GktVGIIGlG~I-G~~vA~~Lkaf-----G~~V~~~dr~~~~~~------------~~~~~g~~~~~sL~eLL~~sDvVi 223 (620)
.++|+|||.|.. |.++|..|... +.+|..||+.....+ ...+..+....++.+.++.||+|+
T Consensus 28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~VV 107 (472)
T 1u8x_X 28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM 107 (472)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCEEE
Confidence 458999999998 66677666544 668999999763211 001222334468888999999999
Q ss_pred EcccCChh---hH----------------------------hhc--CHHHhhccCCCcEEEEcCCChhhcHHHHHHH
Q 007040 224 LHCAVTDE---TI----------------------------QII--NAECLQHIKPGAFLVNTGSSQLLDDCAVKQL 267 (620)
Q Consensus 224 l~lPlT~~---T~----------------------------~lI--~~~~L~~MK~gAiLINvgRG~vVDe~AL~~A 267 (620)
+++|.... ++ .++ -.+.+....|+|+|||++-.-=+-..++.+.
T Consensus 108 iaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~T~~~~k~ 184 (472)
T 1u8x_X 108 AHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRL 184 (472)
T ss_dssp ECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHHHHH
T ss_pred EcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHh
Confidence 99997321 11 111 0133445578999999887654444444444
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0029 Score=66.33 Aligned_cols=68 Identities=18% Similarity=0.124 Sum_probs=48.0
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc------CCceecCCHHhhhcCCcEEEEcccCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP------SAARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~------~g~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
+.++|+|||.|.+|+.+|+.|.. ..+|.++|++....+.... ..+...+.|.++++++|+|++++|..
T Consensus 15 ~~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~ 88 (365)
T 3abi_A 15 RHMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGF 88 (365)
T ss_dssp -CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGG
T ss_pred CccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCc
Confidence 45679999999999999999976 5789999887533221111 11122345778889999999999854
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.011 Score=56.44 Aligned_cols=68 Identities=10% Similarity=-0.013 Sum_probs=49.8
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-----ccCCcee-cCCHHhhhcCCcEEEEcccCCh
Q 007040 163 LVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVT-----FPSAARR-MDTLNDLLAASDVISLHCAVTD 230 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~-----~~~g~~~-~~sL~eLL~~sDvVil~lPlT~ 230 (620)
++|.|.| .|.||+.+++.|...|++|++++|+....... ....... .+++.+++..+|+|+.+.....
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~~ 75 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSGG 75 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCCTTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCTT
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhcCCceEEEecccCCHHHHHHHHcCCCEEEECCcCCC
Confidence 4688998 89999999999999999999999987443211 0001112 2346677889999999887654
|
| >1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1 | Back alignment and structure |
|---|
Probab=95.98 E-value=0.063 Score=56.30 Aligned_cols=95 Identities=16% Similarity=0.192 Sum_probs=69.9
Q ss_pred ecCcEEEEEeCC--hhhHHHHHHHhhCCCEEEEECCCCCCCCccc---------cCC--ceecCCHHhhhcCCcEEEEcc
Q 007040 160 CRGLVLGIVGRS--ASARALATRSLSFKMSVLYFDVPEGKGKVTF---------PSA--ARRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 160 L~GktVGIIGlG--~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~---------~~g--~~~~~sL~eLL~~sDvVil~l 226 (620)
+.|.+|+|||=| ++..+++..+..||++|.+..|..-.....+ ..| +....+++++++.+|||..-.
T Consensus 165 l~gl~va~vGD~~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvyt~~ 244 (325)
T 1vlv_A 165 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV 244 (325)
T ss_dssp STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC
T ss_pred cCCcEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEecc
Confidence 689999999996 9999999999999999999998653322111 123 345689999999999999843
Q ss_pred cC-------Chh-----hHhhcCHHHhhcc-CCCcEEEEcC
Q 007040 227 AV-------TDE-----TIQIINAECLQHI-KPGAFLVNTG 254 (620)
Q Consensus 227 Pl-------T~~-----T~~lI~~~~L~~M-K~gAiLINvg 254 (620)
=. .++ ..--++.+.++.+ ||+++|.-+.
T Consensus 245 w~smg~~~~~~~~~~~~~~y~v~~ell~~a~k~dai~mH~L 285 (325)
T 1vlv_A 245 WASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCL 285 (325)
T ss_dssp CC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred ccccccccchHhHHHHHhhcCCCHHHHHhccCCCeEEECCC
Confidence 21 111 1234588888888 8888888764
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.026 Score=54.31 Aligned_cols=71 Identities=14% Similarity=0.060 Sum_probs=52.3
Q ss_pred ecCcEEEEEe-CChhhHHHHHHHhhCCC--EEEEECCCCCCCCccccCC-------ceecCCHHhhhcCCcEEEEcccCC
Q 007040 160 CRGLVLGIVG-RSASARALATRSLSFKM--SVLYFDVPEGKGKVTFPSA-------ARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 160 L~GktVGIIG-lG~IG~~vA~~LkafG~--~V~~~dr~~~~~~~~~~~g-------~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
+.++++.|.| .|.||+.+++.|...|+ +|++++++........... ....+++.+++...|+|+.+....
T Consensus 16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~~ 95 (242)
T 2bka_A 16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT 95 (242)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEEEECCCcc
Confidence 4678999999 69999999999999999 9999998865432111111 112345667788899999988765
Q ss_pred h
Q 007040 230 D 230 (620)
Q Consensus 230 ~ 230 (620)
.
T Consensus 96 ~ 96 (242)
T 2bka_A 96 R 96 (242)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A | Back alignment and structure |
|---|
Probab=95.85 E-value=0.06 Score=56.39 Aligned_cols=94 Identities=9% Similarity=0.070 Sum_probs=66.3
Q ss_pred ecCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCCCCCCccc-----------cCCceecCCHHhhhcCCcEEEEcc-
Q 007040 160 CRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPEGKGKVTF-----------PSAARRMDTLNDLLAASDVISLHC- 226 (620)
Q Consensus 160 L~GktVGIIGlG-~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~-----------~~g~~~~~sL~eLL~~sDvVil~l- 226 (620)
+.|.+|+|||=| ++..+++..+..||++|.+..|..-.....+ ...+....+++++++.+|||..-+
T Consensus 153 l~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~d~w 232 (321)
T 1oth_A 153 LKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDTW 232 (321)
T ss_dssp CTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCS
T ss_pred cCCcEEEEECCchhhHHHHHHHHHHcCCeEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhccCCEEEEecc
Confidence 689999999985 4888888888899999999998754322111 112455689999999999999843
Q ss_pred ---cCChhh----H----hhcCHHHhhccCCCcEEEEc
Q 007040 227 ---AVTDET----I----QIINAECLQHIKPGAFLVNT 253 (620)
Q Consensus 227 ---PlT~~T----~----~lI~~~~L~~MK~gAiLINv 253 (620)
....+. . --++.+.++.+||+++|.-+
T Consensus 233 ~s~g~e~~~~~~~~~~~~y~v~~~~l~~a~~dai~mH~ 270 (321)
T 1oth_A 233 ISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHC 270 (321)
T ss_dssp SCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEEC
T ss_pred ccccchhhhHHHHHhccCceECHHHHhhcCCCCEEECC
Confidence 111111 0 23577888888888877765
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0087 Score=61.93 Aligned_cols=91 Identities=13% Similarity=0.130 Sum_probs=65.4
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCcee-cCCHHhhhcCCcEEEEcccCChhhHhhcCHH
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR-MDTLNDLLAASDVISLHCAVTDETIQIINAE 239 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~-~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~ 239 (620)
.|.+|.|+|.|.||...++.++.+|++|++.+++....+.....|... ..+.+++.+..|+|+-++..... -..
T Consensus 176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~D~vid~~g~~~~-----~~~ 250 (348)
T 3two_A 176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHYD-----LKD 250 (348)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSCEEEEEECCCSCCC-----HHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcCCCEEEECCCcHHH-----HHH
Confidence 588999999999999999999999999999998876554333333321 12334444468999888874421 234
Q ss_pred HhhccCCCcEEEEcCCC
Q 007040 240 CLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 240 ~L~~MK~gAiLINvgRG 256 (620)
.+..++++..+|.+|-.
T Consensus 251 ~~~~l~~~G~iv~~G~~ 267 (348)
T 3two_A 251 YLKLLTYNGDLALVGLP 267 (348)
T ss_dssp HHTTEEEEEEEEECCCC
T ss_pred HHHHHhcCCEEEEECCC
Confidence 67788889898888753
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.012 Score=61.05 Aligned_cols=95 Identities=11% Similarity=0.142 Sum_probs=60.4
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC-------cc--ccCCceecCCHHhhhcCCcEEEEcccCCh
Q 007040 162 GLVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK-------VT--FPSAARRMDTLNDLLAASDVISLHCAVTD 230 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~--~V~~~dr~~~~~~-------~~--~~~g~~~~~sL~eLL~~sDvVil~lPlT~ 230 (620)
.++|+|||.|.+|..+|..|...+. +|..+|....... .. +........+..+.+..||+|+++.+...
T Consensus 5 ~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~~~ 84 (318)
T 1ez4_A 5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAPQ 84 (318)
T ss_dssp BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC--
T ss_pred CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCCCC
Confidence 3689999999999999999987676 9999998642211 00 10111122244677899999999987542
Q ss_pred h-----------hHhhcC--HHHhhccCCCcEEEEcCCC
Q 007040 231 E-----------TIQIIN--AECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 231 ~-----------T~~lI~--~~~L~~MK~gAiLINvgRG 256 (620)
. |..++- .+.+....|++++|+++-.
T Consensus 85 ~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP 123 (318)
T 1ez4_A 85 KPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANP 123 (318)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCc
Confidence 2 111221 1233444789999998543
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.025 Score=57.66 Aligned_cols=102 Identities=14% Similarity=0.086 Sum_probs=64.9
Q ss_pred cEEEEEeCChhhHHHHHHHhh----CCCEEE-EECCCCCCCCccccCCceecCCHHhhhc--CCcEEEEcccCChhhHhh
Q 007040 163 LVLGIVGRSASARALATRSLS----FKMSVL-YFDVPEGKGKVTFPSAARRMDTLNDLLA--ASDVISLHCAVTDETIQI 235 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lka----fG~~V~-~~dr~~~~~~~~~~~g~~~~~sL~eLL~--~sDvVil~lPlT~~T~~l 235 (620)
.+|||||+|.||+..++.+.. -++++. ++|++... ...++. ..+++++++ +.|+|++++|.... .-
T Consensus 8 ~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a----~~~g~~-~~~~~ell~~~~vD~V~i~tp~~~H--~~ 80 (294)
T 1lc0_A 8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELG----SLDEVR-QISLEDALRSQEIDVAYICSESSSH--ED 80 (294)
T ss_dssp EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCC----EETTEE-BCCHHHHHHCSSEEEEEECSCGGGH--HH
T ss_pred ceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHHH----HHcCCC-CCCHHHHhcCCCCCEEEEeCCcHhH--HH
Confidence 479999999999999988865 367766 56765321 112333 468999997 68999999995432 22
Q ss_pred cCHHHhhccCCCc-EEEEc-CCChhhcHHHHHHHHHcCCcc
Q 007040 236 INAECLQHIKPGA-FLVNT-GSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 236 I~~~~L~~MK~gA-iLINv-gRG~vVDe~AL~~AL~~G~I~ 274 (620)
+- +..++.|. +|+.- ---.+-+.++|+++.++..+.
T Consensus 81 ~~---~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~ 118 (294)
T 1lc0_A 81 YI---RQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRV 118 (294)
T ss_dssp HH---HHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCC
T ss_pred HH---HHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCE
Confidence 22 23344454 66653 122344556788777665443
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.022 Score=58.56 Aligned_cols=67 Identities=13% Similarity=0.074 Sum_probs=50.5
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCCEEE-EECCCCCCCCcc-ccCCceecCCHHhhh----------cCCcEEEEcccCC
Q 007040 163 LVLGIVGR-SASARALATRSLSFKMSVL-YFDVPEGKGKVT-FPSAARRMDTLNDLL----------AASDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafG~~V~-~~dr~~~~~~~~-~~~g~~~~~sL~eLL----------~~sDvVil~lPlT 229 (620)
.+|||||+ |.||...++.++..+.+|. ++|++....... ...+...+.++++++ .+.|+|++++|..
T Consensus 4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP~~ 83 (312)
T 3o9z_A 4 TRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASPNH 83 (312)
T ss_dssp CEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSCGG
T ss_pred eEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCCch
Confidence 47999999 7899999999998898755 678876543211 112345667899988 5789999999965
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.014 Score=60.95 Aligned_cols=96 Identities=11% Similarity=0.146 Sum_probs=60.9
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC-------cc--ccCCceecCCHHhhhcCCcEEEEcccCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK-------VT--FPSAARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~--~V~~~dr~~~~~~-------~~--~~~g~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
..++|+|||.|.+|..+|..|...++ +|..+|....... .. +........+..+.+..||+|+++.+..
T Consensus 8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag~~ 87 (326)
T 2zqz_A 8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAGAP 87 (326)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCCCC
Confidence 34789999999999999999986666 8999998642211 00 1011112224567789999999998754
Q ss_pred hh-----------hHhhcC--HHHhhccCCCcEEEEcCCC
Q 007040 230 DE-----------TIQIIN--AECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 230 ~~-----------T~~lI~--~~~L~~MK~gAiLINvgRG 256 (620)
.. |..++- .+.+....|++++|+++-.
T Consensus 88 ~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP 127 (326)
T 2zqz_A 88 QKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANP 127 (326)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSSS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 32 111111 1223334789999998543
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.017 Score=60.13 Aligned_cols=95 Identities=16% Similarity=0.232 Sum_probs=61.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC--CCCC-------cc-----ccCCceecCCHHhhhcCCcEEEEc
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE--GKGK-------VT-----FPSAARRMDTLNDLLAASDVISLH 225 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~--~~~~-------~~-----~~~g~~~~~sL~eLL~~sDvVil~ 225 (620)
..++|+|||.|.||..+|..+...|+ +|..+|+.+ .... .. ....+....+ .+.+++||+|+++
T Consensus 7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDvVIia 85 (315)
T 3tl2_A 7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSD-YADTADSDVVVIT 85 (315)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESC-GGGGTTCSEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCC-HHHhCCCCEEEEe
Confidence 46789999999999999999998899 999999983 1111 00 0011122233 4678899999999
Q ss_pred ccCC--h-h--------hHhhcC--HHHhhccCCCcEEEEcCCC
Q 007040 226 CAVT--D-E--------TIQIIN--AECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 226 lPlT--~-~--------T~~lI~--~~~L~~MK~gAiLINvgRG 256 (620)
.... | . +..++- .+.+....|++++|+++-.
T Consensus 86 ag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsNP 129 (315)
T 3tl2_A 86 AGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNP 129 (315)
T ss_dssp CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCCh
Confidence 7432 2 1 112221 1234445789999999853
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.023 Score=58.63 Aligned_cols=67 Identities=12% Similarity=0.137 Sum_probs=50.0
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCCEEE-EECCCCCCCCccc-cCCceecCCHHhhh-----------cCCcEEEEcccC
Q 007040 163 LVLGIVGR-SASARALATRSLSFKMSVL-YFDVPEGKGKVTF-PSAARRMDTLNDLL-----------AASDVISLHCAV 228 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafG~~V~-~~dr~~~~~~~~~-~~g~~~~~sL~eLL-----------~~sDvVil~lPl 228 (620)
.++||||+ |.||...++.++..+.++. ++|++........ ..+...+.++++++ .+.|+|++++|.
T Consensus 4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~tP~ 83 (318)
T 3oa2_A 4 KNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICSPN 83 (318)
T ss_dssp CEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECSCG
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECCCc
Confidence 47999999 7899999999998898755 6687765422111 12345667898887 568999999996
Q ss_pred C
Q 007040 229 T 229 (620)
Q Consensus 229 T 229 (620)
.
T Consensus 84 ~ 84 (318)
T 3oa2_A 84 Y 84 (318)
T ss_dssp G
T ss_pred H
Confidence 5
|
| >4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.14 Score=54.03 Aligned_cols=95 Identities=16% Similarity=0.147 Sum_probs=68.6
Q ss_pred ecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccc---------cCC--ceecCCHHhhhcCCcEEEEccc
Q 007040 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTF---------PSA--ARRMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~---------~~g--~~~~~sL~eLL~~sDvVil~lP 227 (620)
+.|.+|+|||= +++..+++..+..||++|.+..|..-.....+ ..| +....+++++++.+|||..-.=
T Consensus 177 l~glkva~vGD~~nva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDVvyt~~w 256 (340)
T 4ep1_A 177 FKGIKLAYVGDGNNVCHSLLLASAKVGMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEILHNPELAVNEADFIYTDVW 256 (340)
T ss_dssp CTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEEEESCHHHHHTTCSEEEECCC
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEECCHHHHhCCCCEEEecCc
Confidence 68999999986 57788888889999999999998653322110 112 3456799999999999987542
Q ss_pred CC------hhh-----HhhcCHHHhhccCCCcEEEEcC
Q 007040 228 VT------DET-----IQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 228 lT------~~T-----~~lI~~~~L~~MK~gAiLINvg 254 (620)
.. ++. .--|+.+.++.+||+++|.-+.
T Consensus 257 ~smg~e~~~~~~~~~~~y~vt~ell~~ak~dai~MHcL 294 (340)
T 4ep1_A 257 MSMGQEGEEEKYTLFQPYQINKELVKHAKQTYHFLHCL 294 (340)
T ss_dssp ------CHHHHHHHHGGGCBCHHHHTTSCTTCEEEECS
T ss_pred cCCCCCchHHHHHHhccccCCHHHHHhcCCCcEEECCC
Confidence 21 111 1246888899899999888875
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0053 Score=64.85 Aligned_cols=67 Identities=15% Similarity=0.164 Sum_probs=50.3
Q ss_pred cEEEEEeCC-hhhHHHHHHHhhC-CCEEE-EECCCCCCCCcc-ccCCceecCCHHhhhcC--CcEEEEcccCC
Q 007040 163 LVLGIVGRS-ASARALATRSLSF-KMSVL-YFDVPEGKGKVT-FPSAARRMDTLNDLLAA--SDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIGlG-~IG~~vA~~Lkaf-G~~V~-~~dr~~~~~~~~-~~~g~~~~~sL~eLL~~--sDvVil~lPlT 229 (620)
.+|||||+| .||..++..+... +++|. ++|++....... ...++..+.++++++++ .|+|++++|..
T Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~~ 75 (387)
T 3moi_A 3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPHQ 75 (387)
T ss_dssp EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCGG
T ss_pred eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCcH
Confidence 479999999 9999999999876 67766 678875432211 11245567899999985 89999999954
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.033 Score=57.71 Aligned_cols=108 Identities=12% Similarity=0.078 Sum_probs=72.6
Q ss_pred ecCcEEEEE-eC-ChhhHHHHHHHhhCCCEEE-EECCCCCCCCccccCCceecCCHHhhhc--CCcEEEEcccCChhhHh
Q 007040 160 CRGLVLGIV-GR-SASARALATRSLSFKMSVL-YFDVPEGKGKVTFPSAARRMDTLNDLLA--ASDVISLHCAVTDETIQ 234 (620)
Q Consensus 160 L~GktVGII-Gl-G~IG~~vA~~LkafG~~V~-~~dr~~~~~~~~~~~g~~~~~sL~eLL~--~sDvVil~lPlT~~T~~ 234 (620)
+..+++.|| |+ |++|..+++.++.+|++++ .++|.....+ -.|...+.+++++.. ..|++++++|.. ....
T Consensus 11 ~~~~siaVV~Gasg~~G~~~~~~l~~~G~~~v~~VnP~~~g~~---i~G~~vy~sl~el~~~~~vD~avI~vP~~-~~~~ 86 (305)
T 2fp4_A 11 VDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKT---HLGLPVFNTVKEAKEQTGATASVIYVPPP-FAAA 86 (305)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCE---ETTEEEESSHHHHHHHHCCCEEEECCCHH-HHHH
T ss_pred hCCCcEEEEECCCCCHHHHHHHHHHHCCCcEEEEeCCCcCcce---ECCeeeechHHHhhhcCCCCEEEEecCHH-HHHH
Confidence 466788988 99 9999999999999999844 5666532111 246666778999988 899999999943 2333
Q ss_pred hcCHHHhhccCCCcEEEEcCCCh-hhcHHHHHHHHHcC-Ccc
Q 007040 235 IINAECLQHIKPGAFLVNTGSSQ-LLDDCAVKQLLIDG-TLA 274 (620)
Q Consensus 235 lI~~~~L~~MK~gAiLINvgRG~-vVDe~AL~~AL~~G-~I~ 274 (620)
++. +.++. .- ..+|+.+-|- .-++..|.+..++. .+.
T Consensus 87 ~~~-e~i~~-Gi-~~iv~~t~G~~~~~~~~l~~~a~~~~gi~ 125 (305)
T 2fp4_A 87 AIN-EAIDA-EV-PLVVCITEGIPQQDMVRVKHRLLRQGKTR 125 (305)
T ss_dssp HHH-HHHHT-TC-SEEEECCCCCCHHHHHHHHHHHTTCSSCE
T ss_pred HHH-HHHHC-CC-CEEEEECCCCChHHHHHHHHHHHhcCCcE
Confidence 332 23332 11 2445566553 34455788888876 554
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0046 Score=64.55 Aligned_cols=93 Identities=12% Similarity=0.036 Sum_probs=62.8
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCC---CCCCccccCCceecC--CH-Hhhh---cCCcEEEEcccCC
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPE---GKGKVTFPSAARRMD--TL-NDLL---AASDVISLHCAVT 229 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~---~~~~~~~~~g~~~~~--sL-~eLL---~~sDvVil~lPlT 229 (620)
.+.|++|.|+|.|.||..+++.++.+|++|++.+++. ...+.....|....+ ++ +++. ...|+|+.++...
T Consensus 178 ~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~ 257 (366)
T 2cdc_A 178 TLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATGAD 257 (366)
T ss_dssp SSTTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEEECTTCSHHHHHHHCCEEEEEECCCCC
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCceechHHHHHHHHHhCCCCCEEEECCCCh
Confidence 3569999999999999999999999999999999876 332211112222111 11 1111 3479999888754
Q ss_pred hhhHhhcCHHHhhccCCCcEEEEcCC
Q 007040 230 DETIQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 230 ~~T~~lI~~~~L~~MK~gAiLINvgR 255 (620)
... + ...+..|+++..+|++|-
T Consensus 258 ~~~---~-~~~~~~l~~~G~iv~~g~ 279 (366)
T 2cdc_A 258 VNI---L-GNVIPLLGRNGVLGLFGF 279 (366)
T ss_dssp THH---H-HHHGGGEEEEEEEEECSC
T ss_pred HHH---H-HHHHHHHhcCCEEEEEec
Confidence 322 0 345677888888888864
|
| >2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A | Back alignment and structure |
|---|
Probab=95.65 E-value=0.046 Score=58.56 Aligned_cols=97 Identities=12% Similarity=0.020 Sum_probs=69.0
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHh
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECL 241 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L 241 (620)
-.++.|+|.|.+|+++|+.++.+|++|+++|+++.-.. .+-+..+|-++...|. + .+.. +
T Consensus 204 ~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~~~~-------------~~~fp~a~~~~~~~p~--~---~~~~--~ 263 (386)
T 2we8_A 204 RPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVFAT-------------TARFPTADEVVVDWPH--R---YLAA--Q 263 (386)
T ss_dssp CCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTTTSC-------------TTTCSSSSEEEESCHH--H---HHHH--H
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhcc-------------cccCCCceEEEeCChH--H---HHHh--h
Confidence 34799999999999999999999999999998763211 1233566655555441 1 1111 1
Q ss_pred h---ccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEe
Q 007040 242 Q---HIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCAL 278 (620)
Q Consensus 242 ~---~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaL 278 (620)
. .+.+++.+|=+.++.-.|...|..+|+.+.....++
T Consensus 264 ~~~~~~~~~t~vvvlTh~~~~D~~~L~~aL~~~~~~YIG~ 303 (386)
T 2we8_A 264 AEAGAIDARTVVCVLTHDPKFDVPLLEVALRLPDIAYIGA 303 (386)
T ss_dssp HHHTCCCTTCEEEECCCCHHHHHHHHHHHTTSSCCSEEEE
T ss_pred ccccCCCCCcEEEEEECChHhHHHHHHHHhcCCCCCEEEE
Confidence 1 167888999999999999999999998863443433
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=95.65 E-value=0.031 Score=59.09 Aligned_cols=98 Identities=14% Similarity=0.205 Sum_probs=61.6
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCC------CEEEEECCCCCCCCc-c-----cc--CCce-ecCCHHhhhcCCcEEEEcc
Q 007040 163 LVLGIVG-RSASARALATRSLSFK------MSVLYFDVPEGKGKV-T-----FP--SAAR-RMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG------~~V~~~dr~~~~~~~-~-----~~--~g~~-~~~sL~eLL~~sDvVil~l 226 (620)
++|+|+| .|.+|+.+.+.|...+ ++|..+......... . +. .... ...+. +.+..+|+|++|+
T Consensus 10 ~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~-~~~~~~DvVf~al 88 (352)
T 2nqt_A 10 TKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEA-AVLGGHDAVFLAL 88 (352)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCH-HHHTTCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCH-HHhcCCCEEEECC
Confidence 6899999 9999999999999876 477776532212110 0 10 0011 11133 3456899999999
Q ss_pred cCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHH
Q 007040 227 AVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQL 267 (620)
Q Consensus 227 PlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~A 267 (620)
|... ..+....++.|+.+|+.+..--.+..+.++.
T Consensus 89 g~~~------s~~~~~~~~~G~~vIDlSa~~R~~~~~~~~~ 123 (352)
T 2nqt_A 89 PHGH------SAVLAQQLSPETLIIDCGADFRLTDAAVWER 123 (352)
T ss_dssp TTSC------CHHHHHHSCTTSEEEECSSTTTCSCHHHHHH
T ss_pred CCcc------hHHHHHHHhCCCEEEEECCCccCCcchhhhh
Confidence 9662 2333444467899999986655555455544
|
| >3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.18 Score=52.07 Aligned_cols=70 Identities=14% Similarity=0.004 Sum_probs=55.7
Q ss_pred ecCcEEEEEeC---ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCCh
Q 007040 160 CRGLVLGIVGR---SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTD 230 (620)
Q Consensus 160 L~GktVGIIGl---G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~ 230 (620)
+.|.+|+|||= +++..+++..+..||++|.+..|..-........|+....+++++++.+|||.. +-..-
T Consensus 144 l~gl~va~vGDl~~~rva~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~g~~~~~d~~eav~~aDvvy~-~~~q~ 216 (291)
T 3d6n_B 144 VKDLRVLYVGDIKHSRVFRSGAPLLNMFGAKIGVCGPKTLIPRDVEVFKVDVFDDVDKGIDWADVVIW-LRLQK 216 (291)
T ss_dssp CTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTTGGGGCEEEESSHHHHHHHCSEEEE-CCCCT
T ss_pred cCCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEECCchhCCchHHHCCCEEEcCHHHHhCCCCEEEE-eCccc
Confidence 68999999997 899999999999999999999986532221112245567899999999999999 66543
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.016 Score=58.29 Aligned_cols=37 Identities=24% Similarity=0.112 Sum_probs=32.7
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCC
Q 007040 161 RGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGK 197 (620)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~ 197 (620)
.|++|.|.|. |.||+.+++.|...|++|++++++...
T Consensus 2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~ 39 (345)
T 2z1m_A 2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGE 39 (345)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCST
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcc
Confidence 5788999987 999999999999999999999987643
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.025 Score=51.14 Aligned_cols=99 Identities=16% Similarity=0.186 Sum_probs=71.1
Q ss_pred cEEEEEeC----ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 163 LVLGIVGR----SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 163 ktVGIIGl----G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
++|+|||. |..|..+.+.|+.+|++|+-++|..... .|...+.+|.++=. -|++++++|. +.+..++.
T Consensus 5 ~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i-----~G~~~y~sl~dlp~-vDlavi~~p~-~~v~~~v~- 76 (122)
T 3ff4_A 5 KKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEV-----LGKTIINERPVIEG-VDTVTLYINP-QNQLSEYN- 76 (122)
T ss_dssp CCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEE-----TTEECBCSCCCCTT-CCEEEECSCH-HHHGGGHH-
T ss_pred CEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcC-----CCeeccCChHHCCC-CCEEEEEeCH-HHHHHHHH-
Confidence 57999998 5689999999999999999999875321 35556678888877 9999999994 33444543
Q ss_pred HHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 239 ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 239 ~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
+.. .+...+++++.|- .++++.+.+++..+.
T Consensus 77 e~~-~~g~k~v~~~~G~----~~~e~~~~a~~~Gir 107 (122)
T 3ff4_A 77 YIL-SLKPKRVIFNPGT----ENEELEEILSENGIE 107 (122)
T ss_dssp HHH-HHCCSEEEECTTC----CCHHHHHHHHHTTCE
T ss_pred HHH-hcCCCEEEECCCC----ChHHHHHHHHHcCCe
Confidence 233 3444567776543 356777777777665
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.012 Score=57.89 Aligned_cols=67 Identities=21% Similarity=0.173 Sum_probs=46.8
Q ss_pred CcEEEEEeCChhhHHHHHH--HhhCCCEEE-EECCCCCCCCccc-cCCceecCCHHhhhc-CCcEEEEcccCC
Q 007040 162 GLVLGIVGRSASARALATR--SLSFKMSVL-YFDVPEGKGKVTF-PSAARRMDTLNDLLA-ASDVISLHCAVT 229 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~--LkafG~~V~-~~dr~~~~~~~~~-~~g~~~~~sL~eLL~-~sDvVil~lPlT 229 (620)
..+++|||.|.+|+.+|+. ... |+++. ++|..+....... ...+...++++++++ +.|+|++++|..
T Consensus 80 ~~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~ell~~~ID~ViIA~Ps~ 151 (211)
T 2dt5_A 80 KWGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVPRE 151 (211)
T ss_dssp CEEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSCHH
T ss_pred CCEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhhcCCeeecHHhHHHHHHcCCCEEEEeCCch
Confidence 3579999999999999995 334 88765 5677664432111 112334678999886 489999999954
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.03 Score=53.09 Aligned_cols=94 Identities=11% Similarity=0.044 Sum_probs=57.5
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCcee-cCCHH----hhhcCCcEEEEcccCC--h---h
Q 007040 163 LVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR-MDTLN----DLLAASDVISLHCAVT--D---E 231 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~-~~sL~----eLL~~sDvVil~lPlT--~---~ 231 (620)
++|.|.|. |.||+.+++.|...|++|++++|+..........++.. ..++. +.+..+|+|+.+.... + .
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~~ 80 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSVPWGSGRGY 80 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCCCTTSSCTH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccHhhcccCCEEEECCccCCCcchhh
Confidence 46889987 99999999999999999999999753322111111110 11221 6788899999988653 1 1
Q ss_pred hHhhcCHHHhhccC-CCcEEEEcCCC
Q 007040 232 TIQIINAECLQHIK-PGAFLVNTGSS 256 (620)
Q Consensus 232 T~~lI~~~~L~~MK-~gAiLINvgRG 256 (620)
+.-.....++..|+ .|..+|+++..
T Consensus 81 ~n~~~~~~l~~a~~~~~~~~v~~SS~ 106 (224)
T 3h2s_A 81 LHLDFATHLVSLLRNSDTLAVFILGS 106 (224)
T ss_dssp HHHHHHHHHHHTCTTCCCEEEEECCG
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEecc
Confidence 11111233445553 24667777653
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.026 Score=58.04 Aligned_cols=106 Identities=8% Similarity=0.014 Sum_probs=68.0
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCCE-EEEECCCCCCCCccccCCceecCCHHhhhc--CCcEEEEcccCChhhHhhcCH
Q 007040 163 LVLGIVGR-SASARALATRSLSFKMS-VLYFDVPEGKGKVTFPSAARRMDTLNDLLA--ASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafG~~-V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~--~sDvVil~lPlT~~T~~lI~~ 238 (620)
.+++|+|. |++|+.+++.+...|++ |..++|.... . . ..+...+.+++++.. ..|++++++|.. .+...+ .
T Consensus 14 ~~v~V~Gasg~~G~~~~~~l~~~g~~~V~~VnP~~~g-~-~-i~G~~vy~sl~el~~~~~~Dv~ii~vp~~-~~~~~v-~ 88 (294)
T 2yv1_A 14 TKAIVQGITGRQGSFHTKKMLECGTKIVGGVTPGKGG-Q-N-VHGVPVFDTVKEAVKETDANASVIFVPAP-FAKDAV-F 88 (294)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCEEEEECTTCTT-C-E-ETTEEEESSHHHHHHHHCCCEEEECCCHH-HHHHHH-H
T ss_pred CEEEEECCCCCHHHHHHHHHHhCCCeEEEEeCCCCCC-c-e-ECCEeeeCCHHHHhhcCCCCEEEEccCHH-HHHHHH-H
Confidence 45788899 99999999999998997 4456654321 1 1 146667789999998 899999999943 233333 2
Q ss_pred HHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 239 ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 239 ~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
+.++.=.+..+++..+- ...++++|.++.++..+.
T Consensus 89 ea~~~Gi~~vVi~t~G~-~~~~~~~l~~~A~~~gi~ 123 (294)
T 2yv1_A 89 EAIDAGIELIVVITEHI-PVHDTMEFVNYAEDVGVK 123 (294)
T ss_dssp HHHHTTCSEEEECCSCC-CHHHHHHHHHHHHHHTCE
T ss_pred HHHHCCCCEEEEECCCC-CHHHHHHHHHHHHHcCCE
Confidence 33333222233333322 334567888888776553
|
| >1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1 | Back alignment and structure |
|---|
Probab=95.53 E-value=0.023 Score=59.16 Aligned_cols=95 Identities=16% Similarity=0.205 Sum_probs=67.6
Q ss_pred ecCcEEEEEeCC---hhhHHHHHHHhhCCCEEEEECCCCCCCCccc-----cCC--ceecCCHHhhhcCCcEEEEcccCC
Q 007040 160 CRGLVLGIVGRS---ASARALATRSLSFKMSVLYFDVPEGKGKVTF-----PSA--ARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 160 L~GktVGIIGlG---~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~-----~~g--~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
+.|.+|++||=| ++..+++..+..||++|.+..|..-...... ..| +....+++++++.+|||..-.=..
T Consensus 153 l~gl~va~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q~ 232 (308)
T 1ml4_A 153 IDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQK 232 (308)
T ss_dssp SSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCCCG
T ss_pred CCCeEEEEeCCCCcCchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCccc
Confidence 689999999984 8999999999999999999998653322111 112 234578999999999999854211
Q ss_pred ------hhhH-----hhcCHHHhhccCCCcEEEEcC
Q 007040 230 ------DETI-----QIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 230 ------~~T~-----~lI~~~~L~~MK~gAiLINvg 254 (620)
++.. --++.+.++.+||+++|.-+.
T Consensus 233 er~~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~l 268 (308)
T 1ml4_A 233 ERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPL 268 (308)
T ss_dssp GGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCS
T ss_pred cccCCHHHHHHHhcCcccCHHHHhhcCCCCEEECCC
Confidence 1111 234777777778777777653
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.022 Score=61.38 Aligned_cols=67 Identities=6% Similarity=0.076 Sum_probs=49.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEEE-EECCCCCCCCccc----cCC---ceecC----CHHhhhc--CCcEEEEccc
Q 007040 163 LVLGIVGRSASARALATRSLSF-KMSVL-YFDVPEGKGKVTF----PSA---ARRMD----TLNDLLA--ASDVISLHCA 227 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-G~~V~-~~dr~~~~~~~~~----~~g---~~~~~----sL~eLL~--~sDvVil~lP 227 (620)
.+|||||+|.||+..++.+... |++|. ++|+++....... ..+ ...+. +++++++ +.|+|++++|
T Consensus 21 ~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp 100 (444)
T 2ixa_A 21 VRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVSSP 100 (444)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEECCC
T ss_pred ceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEEcCC
Confidence 5799999999999999998875 77764 7788764332111 012 34455 8999997 4899999999
Q ss_pred CC
Q 007040 228 VT 229 (620)
Q Consensus 228 lT 229 (620)
..
T Consensus 101 ~~ 102 (444)
T 2ixa_A 101 WE 102 (444)
T ss_dssp GG
T ss_pred cH
Confidence 54
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=95.51 E-value=0.017 Score=60.54 Aligned_cols=97 Identities=19% Similarity=0.175 Sum_probs=63.6
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC---------ccccC--CceecCCHHhhhcCCcEEEEc
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK---------VTFPS--AARRMDTLNDLLAASDVISLH 225 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~--~V~~~dr~~~~~~---------~~~~~--g~~~~~sL~eLL~~sDvVil~ 225 (620)
....++|+|||.|.||..+|..+...|. +|..+|....... ..+.. ......+.+ .+++||+|+++
T Consensus 16 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~-~~~~aDiVvi~ 94 (331)
T 4aj2_A 16 QVPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYS-VTANSKLVIIT 94 (331)
T ss_dssp -CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGG-GGTTEEEEEEC
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHH-HhCCCCEEEEc
Confidence 3567899999999999999999987777 9999998753111 01111 122234565 58999999998
Q ss_pred ccCCh---hhH--------hhcC--HHHhhccCCCcEEEEcCCC
Q 007040 226 CAVTD---ETI--------QIIN--AECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 226 lPlT~---~T~--------~lI~--~~~L~~MK~gAiLINvgRG 256 (620)
..... .|+ .++- .+.+....|++++++++-.
T Consensus 95 aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtNP 138 (331)
T 4aj2_A 95 AGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNP 138 (331)
T ss_dssp CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred cCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCh
Confidence 64321 122 2221 1234455899999999854
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0075 Score=62.79 Aligned_cols=93 Identities=14% Similarity=0.098 Sum_probs=64.4
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCcee---c--C-CHH-hhhcCCcEEEEcccCChhhH
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR---M--D-TLN-DLLAASDVISLHCAVTDETI 233 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~---~--~-sL~-eLL~~sDvVil~lPlT~~T~ 233 (620)
.|.+|.|+|.|.||..+++.++.+|++|++.+++....+.....|... . . ++. .+....|+|+.+++.++ .
T Consensus 179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~~~--~ 256 (360)
T 1piw_A 179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLT--D 256 (360)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCST--T
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCCCc--H
Confidence 588999999999999999999999999999998775543222223221 1 1 222 22246899999987621 0
Q ss_pred hhcCHHHhhccCCCcEEEEcCCC
Q 007040 234 QIINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgRG 256 (620)
..+ ...+..|+++..+|.+|..
T Consensus 257 ~~~-~~~~~~l~~~G~iv~~g~~ 278 (360)
T 1piw_A 257 IDF-NIMPKAMKVGGRIVSISIP 278 (360)
T ss_dssp CCT-TTGGGGEEEEEEEEECCCC
T ss_pred HHH-HHHHHHhcCCCEEEEecCC
Confidence 112 2457788999999998753
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.018 Score=59.60 Aligned_cols=62 Identities=18% Similarity=0.157 Sum_probs=48.4
Q ss_pred CcEEEEEeCChhhH-HHHHHHhhC-CCEEE-EECCCCCCCCccccCCceecCCHHhhhcC---CcEEEEcccCC
Q 007040 162 GLVLGIVGRSASAR-ALATRSLSF-KMSVL-YFDVPEGKGKVTFPSAARRMDTLNDLLAA---SDVISLHCAVT 229 (620)
Q Consensus 162 GktVGIIGlG~IG~-~vA~~Lkaf-G~~V~-~~dr~~~~~~~~~~~g~~~~~sL~eLL~~---sDvVil~lPlT 229 (620)
-.+|||||+|.||+ ..++.++.. +++|. ++|++... .++..+.+++++++. .|+|++++|..
T Consensus 25 ~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~------~g~~~~~~~~~ll~~~~~vD~V~i~tp~~ 92 (330)
T 4ew6_A 25 PINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV------EGVNSYTTIEAMLDAEPSIDAVSLCMPPQ 92 (330)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC------TTSEEESSHHHHHHHCTTCCEEEECSCHH
T ss_pred CceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh------cCCCccCCHHHHHhCCCCCCEEEEeCCcH
Confidence 46899999999999 788888876 77765 56776532 245567899999876 89999999943
|
| >4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A | Back alignment and structure |
|---|
Probab=95.45 E-value=0.097 Score=55.72 Aligned_cols=95 Identities=11% Similarity=0.024 Sum_probs=69.2
Q ss_pred ecCcEEEEEeCC--hhhHHHHHHHhhCCCEEEEECCCCCCC--Ccc---------ccCC--ceecCCHHhhhcCCcEEEE
Q 007040 160 CRGLVLGIVGRS--ASARALATRSLSFKMSVLYFDVPEGKG--KVT---------FPSA--ARRMDTLNDLLAASDVISL 224 (620)
Q Consensus 160 L~GktVGIIGlG--~IG~~vA~~LkafG~~V~~~dr~~~~~--~~~---------~~~g--~~~~~sL~eLL~~sDvVil 224 (620)
+.|.+|++||=| +++.+++..+..+|++|.+..|..-.. ... ...| +....+++++++.+|||..
T Consensus 178 l~glkva~vGD~~nnva~Sl~~~~~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~d~~eav~~aDVVyt 257 (365)
T 4amu_A 178 LKNKKIVFIGDYKNNVGVSTMIGAAFNGMHVVMCGPDNYKNEIDKNVLAKCIELFKRNGGSLRFSTDKILAAQDADVIYT 257 (365)
T ss_dssp CTTCEEEEESSTTSHHHHHHHHHHHHTTCEEEEESCGGGGGGSCHHHHHHHHHHHHHHSCEEEEESCHHHHTTTCSEEEE
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHHcCCEEEEECCccccCCCcHHHHHHHHHHHHHcCCEEEEECCHHHHhcCCCEEEe
Confidence 689999999988 788999999999999999999864322 111 0112 3456799999999999997
Q ss_pred cc--cCCh--h---hH------hhcCHHHhhccCCCcEEEEcC
Q 007040 225 HC--AVTD--E---TI------QIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 225 ~l--PlT~--~---T~------~lI~~~~L~~MK~gAiLINvg 254 (620)
-+ .... + .+ --|+.+.++.+||+++|.-+.
T Consensus 258 d~W~smg~~~~~~~er~~~~~~y~vt~ell~~a~~dai~MHcL 300 (365)
T 4amu_A 258 DVWVSLGEPFELFDKRIGELKNFQVDMNMIKAAKNDVIFLHCL 300 (365)
T ss_dssp CCSCCTTCCHHHHHHHHHHHTTCCBCHHHHHHSCTTCEEEECS
T ss_pred cccccCCchhhhHHHHHHHhcccccCHHHHHhcCCCcEEECCC
Confidence 32 1111 1 01 236888999999999988875
|
| >3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.17 Score=52.62 Aligned_cols=95 Identities=9% Similarity=0.017 Sum_probs=68.1
Q ss_pred ec-CcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-----------cCCceecCCHHhhhcCCcEEEEcc
Q 007040 160 CR-GLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTF-----------PSAARRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 160 L~-GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~-----------~~g~~~~~sL~eLL~~sDvVil~l 226 (620)
+. |.+|+|||= +++..+++..+..||++|.+..|..-...... ...+....++++.++.+|||..-.
T Consensus 143 l~~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvyt~~ 222 (307)
T 3tpf_A 143 QNGIAKVAFIGDSNNMCNSWLITAAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGYDKFEALKDKDVVITDT 222 (307)
T ss_dssp GGGCCEEEEESCSSHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEECC
T ss_pred CCCCCEEEEEcCCCccHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEecC
Confidence 67 999999996 57888888889999999999998653322111 113345679999999999998765
Q ss_pred --cCCh--h--------hHhhcCHHHhhccCCCcEEEEcC
Q 007040 227 --AVTD--E--------TIQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 227 --PlT~--~--------T~~lI~~~~L~~MK~gAiLINvg 254 (620)
.... + ..--++.+.++.+|++++|.-+.
T Consensus 223 w~smg~e~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mH~l 262 (307)
T 3tpf_A 223 WVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCL 262 (307)
T ss_dssp SSCTTGGGGHHHHHHHTGGGCBCHHHHHHSCTTCEEEECS
T ss_pred cccCCchhhHHHHHHHhcccccCHHHHHhcCCCcEEECCC
Confidence 0111 1 01236888888888888888775
|
| >1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A | Back alignment and structure |
|---|
Probab=95.40 E-value=0.039 Score=58.14 Aligned_cols=96 Identities=14% Similarity=0.082 Sum_probs=71.2
Q ss_pred eecCcEEEEEeCC--hhhHHHHHHHhhCCCEEEEECCCCCCCCccc---------cCC--ceecCCHHhhhcCCcEEEEc
Q 007040 159 RCRGLVLGIVGRS--ASARALATRSLSFKMSVLYFDVPEGKGKVTF---------PSA--ARRMDTLNDLLAASDVISLH 225 (620)
Q Consensus 159 ~L~GktVGIIGlG--~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~---------~~g--~~~~~sL~eLL~~sDvVil~ 225 (620)
.+.|.+|++||=| +++.+++..+..||++|.+..|..-.....+ ..| +....++++.++.+|||..-
T Consensus 152 ~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd 231 (335)
T 1dxh_A 152 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTD 231 (335)
T ss_dssp CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred CcCCeEEEEecCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEeC
Confidence 3789999999996 9999999999999999999998653322111 123 34568999999999999984
Q ss_pred ccC--------Chh-----hHhhcCHHHhhcc-CCCcEEEEcC
Q 007040 226 CAV--------TDE-----TIQIINAECLQHI-KPGAFLVNTG 254 (620)
Q Consensus 226 lPl--------T~~-----T~~lI~~~~L~~M-K~gAiLINvg 254 (620)
.=. ..+ ..--++.+.++.+ ||+++|.-+.
T Consensus 232 ~w~smg~~~e~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcL 274 (335)
T 1dxh_A 232 VWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL 274 (335)
T ss_dssp CCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred CccccCccchhhHHHHHHhhcceeCHHHHHhccCCCeEEECCC
Confidence 331 111 1134688899989 8899888774
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.045 Score=57.54 Aligned_cols=101 Identities=15% Similarity=0.110 Sum_probs=60.6
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCC-CEEEEECCCCCCCCccc---c--CC--ceecCCHHhhhcCCcEEEEcccCChhhH
Q 007040 163 LVLGIVG-RSASARALATRSLSFK-MSVLYFDVPEGKGKVTF---P--SA--ARRMDTLNDLLAASDVISLHCAVTDETI 233 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG-~~V~~~dr~~~~~~~~~---~--~g--~~~~~sL~eLL~~sDvVil~lPlT~~T~ 233 (620)
.+|||+| +|.||+.+.+.|.... ++|.++........... + .+ .....++++ +..+|+|++|+|.... .
T Consensus 5 ~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~~~~~-~~~vDvV~~a~g~~~s-~ 82 (345)
T 2ozp_A 5 KTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPEK-LEPADILVLALPHGVF-A 82 (345)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCBCGGG-CCCCSEEEECCCTTHH-H
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCcccccccchhH-hcCCCEEEEcCCcHHH-H
Confidence 5799999 8999999999998664 48777655332221100 0 01 111234444 5789999999997632 2
Q ss_pred hhcCHHHhhccCCCcEEEEcCCChhhc-HHHHHHHHH
Q 007040 234 QIINAECLQHIKPGAFLVNTGSSQLLD-DCAVKQLLI 269 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgRG~vVD-e~AL~~AL~ 269 (620)
.+. . ..++.|+.+|+.+-.--.+ .+...+...
T Consensus 83 ~~a-~---~~~~aG~~VId~Sa~~r~~~~~~y~~~y~ 115 (345)
T 2ozp_A 83 REF-D---RYSALAPVLVDLSADFRLKDPELYRRYYG 115 (345)
T ss_dssp HTH-H---HHHTTCSEEEECSSTTSCSCHHHHHHHHC
T ss_pred HHH-H---HHHHCCCEEEEcCccccCCChHHHHhhhc
Confidence 221 1 2346788999987633233 344444444
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0091 Score=62.68 Aligned_cols=90 Identities=17% Similarity=0.165 Sum_probs=61.4
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCcee---cCC---HHhhhcCCcEEEEcccCChhhHh
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR---MDT---LNDLLAASDVISLHCAVTDETIQ 234 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~---~~s---L~eLL~~sDvVil~lPlT~~T~~ 234 (620)
.|.+|.|+|.|.||...++.++.+|++|++.+++....+.....|... ..+ ++++....|+|+.++.....
T Consensus 194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~~~~--- 270 (369)
T 1uuf_A 194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHN--- 270 (369)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCC---
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCCHHH---
Confidence 588999999999999999999999999999998764433222222211 111 22333457888888764321
Q ss_pred hcCHHHhhccCCCcEEEEcCC
Q 007040 235 IINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 235 lI~~~~L~~MK~gAiLINvgR 255 (620)
-...+..|+++..+|.+|-
T Consensus 271 --~~~~~~~l~~~G~iv~~G~ 289 (369)
T 1uuf_A 271 --LDDFTTLLKRDGTMTLVGA 289 (369)
T ss_dssp --HHHHHTTEEEEEEEEECCC
T ss_pred --HHHHHHHhccCCEEEEecc
Confidence 1345677888888888765
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.048 Score=59.17 Aligned_cols=86 Identities=8% Similarity=0.081 Sum_probs=65.3
Q ss_pred eecCcEEEEEeCC----------hhhHHHHHHHhhC-CCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEccc
Q 007040 159 RCRGLVLGIVGRS----------ASARALATRSLSF-KMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 159 ~L~GktVGIIGlG----------~IG~~vA~~Lkaf-G~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lP 227 (620)
.+.|++|+|+|+. .-...|++.|... |++|.+|||..... ....++++.+..+|+|+++++
T Consensus 312 ~~~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~--------~~~~~~~~~~~~ad~vvi~t~ 383 (431)
T 3ojo_A 312 ALSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELD--------FVEHDMSHAVKDASLVLILSD 383 (431)
T ss_dssp HSSCCEEEEECCCSSTTSCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT--------TBCSTTHHHHTTCSEEEECSC
T ss_pred hcCCCEEEEEeeeeCCCCcchhcChHHHHHHHHHhhcCCEEEEECCCcccc--------cccCCHHHHHhCCCEEEEecC
Confidence 3689999999974 3478999999999 99999999987542 124678999999999999998
Q ss_pred CChhhHhhcCHHHhhccCCCcEEEEcCCC
Q 007040 228 VTDETIQIINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 228 lT~~T~~lI~~~~L~~MK~gAiLINvgRG 256 (620)
..+ -+ -++-+.+..|+ +.++||+ |+
T Consensus 384 ~~~-f~-~~d~~~~~~~~-~~~i~D~-r~ 408 (431)
T 3ojo_A 384 HSE-FK-NLSDSHFDKMK-HKVIFDT-KN 408 (431)
T ss_dssp CGG-GT-SCCGGGGTTCS-SCEEEES-SC
T ss_pred CHH-Hh-ccCHHHHHhCC-CCEEEEC-CC
Confidence 652 22 23444556676 6788885 44
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.024 Score=54.63 Aligned_cols=67 Identities=18% Similarity=0.161 Sum_probs=45.9
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhc----CCcEEEEcccCC
Q 007040 163 LVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLA----ASDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~----~sDvVil~lPlT 229 (620)
+++.|.|. |.||+.+|+.|...|++|++.+++................++++++. ..|+|+.+.-..
T Consensus 2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~vi~~Ag~~ 73 (255)
T 2dkn_A 2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGGVLDGLVCCAGVG 73 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHHHHTTCCSEEEECCCCC
T ss_pred cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccccccCCcccHHHHHHHHHHcCCCccEEEECCCCC
Confidence 36788876 99999999999999999999998764432111111112234555554 789999876544
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.016 Score=57.46 Aligned_cols=67 Identities=16% Similarity=0.072 Sum_probs=48.2
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc---cCCceecCCHHhhhcC-CcEEEEcccC
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF---PSAARRMDTLNDLLAA-SDVISLHCAV 228 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~---~~g~~~~~sL~eLL~~-sDvVil~lPl 228 (620)
+++|.|.|.|.||+.+++.|...|++|++++++........ .........+.+++.. +|+|+.+...
T Consensus 3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~~ 73 (286)
T 3gpi_A 3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPMPAGVQTLIADVTRPDTLASIVHLRPEILVYCVAA 73 (286)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCCCTTCCEEECCTTCGGGCTTGGGGCCSEEEECHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccccccCCceEEccCCChHHHHHhhcCCCCEEEEeCCC
Confidence 57899999999999999999999999999999865422110 0111123345566766 9999987753
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.05 Score=58.74 Aligned_cols=114 Identities=11% Similarity=0.029 Sum_probs=71.5
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC----ccccCCceec--CCHHhhhcC-CcEEEEc--ccCC
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK----VTFPSAARRM--DTLNDLLAA-SDVISLH--CAVT 229 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~----~~~~~g~~~~--~sL~eLL~~-sDvVil~--lPlT 229 (620)
++.|++|.|||+|.+|.++|+.|+..|++|.++|....... .....|+... ...++++.. +|+|++. +|.+
T Consensus 6 ~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi~~~ 85 (451)
T 3lk7_A 6 TFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIPYN 85 (451)
T ss_dssp TTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTSCTT
T ss_pred hcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECCcCCCC
Confidence 46799999999999999999999999999999998652111 1111233221 223456666 8999985 4332
Q ss_pred -hhh-----H--hhcCH-HHhhccCCCcEEEEc-CCChhhcHHHHHHHHHcCC
Q 007040 230 -DET-----I--QIINA-ECLQHIKPGAFLVNT-GSSQLLDDCAVKQLLIDGT 272 (620)
Q Consensus 230 -~~T-----~--~lI~~-~~L~~MK~gAiLINv-gRG~vVDe~AL~~AL~~G~ 272 (620)
|+. . .++.. +.+..+.+..++-=| +-|+.--..-+...|+...
T Consensus 86 ~p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g 138 (451)
T 3lk7_A 86 NPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGG 138 (451)
T ss_dssp SHHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTT
T ss_pred ChhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 221 1 13443 344444334444434 4688877777777787544
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.29 E-value=0.028 Score=58.62 Aligned_cols=90 Identities=16% Similarity=0.082 Sum_probs=60.0
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCccccCCcee---c----CCHHhhhc-----CCcEEEEccc
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARR---M----DTLNDLLA-----ASDVISLHCA 227 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~~~g~~~---~----~sL~eLL~-----~sDvVil~lP 227 (620)
.|.+|.|+|.|.||...++.++.+|+ +|++.+++....+.....|... . .++.+.+. ..|+|+.++.
T Consensus 192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g 271 (374)
T 1cdo_A 192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVG 271 (374)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEECCC
Confidence 58899999999999999999999999 8999998765433222222211 1 12333222 4788888776
Q ss_pred CChhhHhhcCHHHhhccCCC-cEEEEcCC
Q 007040 228 VTDETIQIINAECLQHIKPG-AFLVNTGS 255 (620)
Q Consensus 228 lT~~T~~lI~~~~L~~MK~g-AiLINvgR 255 (620)
..+. -...+..++++ ..+|.+|-
T Consensus 272 ~~~~-----~~~~~~~l~~~~G~iv~~G~ 295 (374)
T 1cdo_A 272 NVGV-----MRNALESCLKGWGVSVLVGW 295 (374)
T ss_dssp CHHH-----HHHHHHTBCTTTCEEEECSC
T ss_pred CHHH-----HHHHHHHhhcCCcEEEEEcC
Confidence 4221 13456777887 77777764
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.032 Score=56.72 Aligned_cols=69 Identities=14% Similarity=0.129 Sum_probs=49.6
Q ss_pred ecCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcc------------------ccCCceecCCHHhhhcCCc
Q 007040 160 CRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVT------------------FPSAARRMDTLNDLLAASD 220 (620)
Q Consensus 160 L~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~------------------~~~g~~~~~sL~eLL~~sD 220 (620)
+.+++|.|.| .|-||+.+++.|...|++|+++++........ ........+.+.+++..+|
T Consensus 23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d 102 (351)
T 3ruf_A 23 FSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVD 102 (351)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTCS
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCCC
Confidence 5688999999 59999999999999999999999876432100 0001112234667788899
Q ss_pred EEEEcccC
Q 007040 221 VISLHCAV 228 (620)
Q Consensus 221 vVil~lPl 228 (620)
+|+.+...
T Consensus 103 ~Vih~A~~ 110 (351)
T 3ruf_A 103 HVLHQAAL 110 (351)
T ss_dssp EEEECCCC
T ss_pred EEEECCcc
Confidence 98887764
|
| >2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.1 Score=55.42 Aligned_cols=95 Identities=18% Similarity=0.154 Sum_probs=70.1
Q ss_pred ecCcEEEEEeCC--hhhHHHHHHHhhCCCEEEEECCCCCCCCccc---------cCC--ceecCCHHhhhcCCcEEEEcc
Q 007040 160 CRGLVLGIVGRS--ASARALATRSLSFKMSVLYFDVPEGKGKVTF---------PSA--ARRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 160 L~GktVGIIGlG--~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~---------~~g--~~~~~sL~eLL~~sDvVil~l 226 (620)
+.|.+|++||=| +++.+++..+..||++|.+..|..-.....+ ..| +....+++++++.+|||..-.
T Consensus 174 l~gl~va~vGD~~~rva~Sl~~~~~~lG~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd~ 253 (359)
T 2w37_A 174 LQGLTLTFMGDGRNNVANSLLVTGAILGVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVITDDLDEGLKGSNVVYTDV 253 (359)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHHHHTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred cCCeEEEEECCCccchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhcCCCEEEEcc
Confidence 689999999996 9999999999999999999998653222111 122 445689999999999999844
Q ss_pred cC--C----hh-----hHhhcCHHHhhccC---CCcEEEEcC
Q 007040 227 AV--T----DE-----TIQIINAECLQHIK---PGAFLVNTG 254 (620)
Q Consensus 227 Pl--T----~~-----T~~lI~~~~L~~MK---~gAiLINvg 254 (620)
=. . .+ ..--|+.+.++.+| |+++|.-+.
T Consensus 254 w~smg~ee~~er~~~~~~y~v~~ell~~ak~~~~dai~MHcL 295 (359)
T 2w37_A 254 WVSMGESNWEERVKELTPYQVNMEAMKKTGTPDDQLIFMHCL 295 (359)
T ss_dssp SCCTTCTTHHHHHHHHGGGCBCHHHHHTTCCCGGGCEEEECS
T ss_pred cccccccchHHHHHHhhccccCHHHHHhhCCCCCCEEEECCC
Confidence 21 0 11 11345888888888 888888774
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.019 Score=56.65 Aligned_cols=66 Identities=14% Similarity=0.016 Sum_probs=47.0
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCce----ecCCHHhhhcCCcEEEEcccCC
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR----RMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~----~~~sL~eLL~~sDvVil~lPlT 229 (620)
.++|.|.|.|.||+.+++.|...|++|++++|+..........++. ...+++ +..+|+|+.+....
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~~~ 74 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS--LDGVTHLLISTAPD 74 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC--CTTCCEEEECCCCB
T ss_pred cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc--cCCCCEEEECCCcc
Confidence 3689999999999999999999999999999976432211111111 112333 77899999887654
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=95.25 E-value=0.022 Score=58.86 Aligned_cols=93 Identities=16% Similarity=0.162 Sum_probs=59.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC--CEEEEECCCCCCCC---cccc------CCceecCCHHhhhcCCcEEEEcccCChh
Q 007040 163 LVLGIVGRSASARALATRSLSFK--MSVLYFDVPEGKGK---VTFP------SAARRMDTLNDLLAASDVISLHCAVTDE 231 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG--~~V~~~dr~~~~~~---~~~~------~g~~~~~sL~eLL~~sDvVil~lPlT~~ 231 (620)
++|+|||.|.+|.++|..|...+ -+|..+|....... ..+. .......+-.+.+..||+|+++.+....
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~~~~ 80 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVAQR 80 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCCCCC
Confidence 47999999999999999998766 48999998752211 0000 1111111236678999999999865432
Q ss_pred -----------hHhhcC--HHHhhccCCCcEEEEcCC
Q 007040 232 -----------TIQIIN--AECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 232 -----------T~~lI~--~~~L~~MK~gAiLINvgR 255 (620)
|..++- .+.+....|++++||++-
T Consensus 81 ~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 117 (310)
T 2xxj_A 81 PGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATN 117 (310)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred CCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 111111 122333478999999854
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.06 Score=56.81 Aligned_cols=119 Identities=13% Similarity=0.127 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECC
Q 007040 115 AEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDV 193 (620)
Q Consensus 115 a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr 193 (620)
....||.++-|=|-++|- .-|.. .+...|++++|.|||.|.+|..+|+.|...|. ++..+|.
T Consensus 4 p~~~~~~~~~lnl~lm~w-----------Rll~~------~g~~kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~ 66 (340)
T 3rui_A 4 PLKIADQSVDLNLKLMKW-----------RILPD------LNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDN 66 (340)
T ss_dssp HHHHHHHHHHHHHHHHHH-----------HTCTT------CCHHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHH-----------hhcch------hhHHHHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecC
Confidence 345777777776666531 12321 23457899999999999999999999999998 7888887
Q ss_pred CCCCCC-------------------------ccccCCc--eec---------------------CCHHhhhcCCcEEEEc
Q 007040 194 PEGKGK-------------------------VTFPSAA--RRM---------------------DTLNDLLAASDVISLH 225 (620)
Q Consensus 194 ~~~~~~-------------------------~~~~~g~--~~~---------------------~sL~eLL~~sDvVil~ 225 (620)
..-... ......+ ... +.+.+++..+|+|+.+
T Consensus 67 D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~v~v~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~ 146 (340)
T 3rui_A 67 GTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLL 146 (340)
T ss_dssp CBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEECCCCCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEEC
T ss_pred CEeccccccccccCChhhcChHHHHHHHHHHHHhCCCCEEEEEeccccccCcccchhhhhcCCHHHHHhhhccCCEEEec
Confidence 531100 0000001 111 1246788889999887
Q ss_pred ccCChhhHhhcCHHHhhccCCCcEEEEcC
Q 007040 226 CAVTDETIQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 226 lPlT~~T~~lI~~~~L~~MK~gAiLINvg 254 (620)
+- +.+++.+++...... +..+|+.+
T Consensus 147 tD-n~~tR~lin~~c~~~---~~plI~aa 171 (340)
T 3rui_A 147 VD-SRESRWLPSLLSNIE---NKTVINAA 171 (340)
T ss_dssp CS-STGGGHHHHHHHHHT---TCEEEEEE
T ss_pred CC-CHHHHHHHHHHHHHc---CCcEEEee
Confidence 75 556888888766553 44577754
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=95.25 E-value=0.028 Score=58.63 Aligned_cols=90 Identities=12% Similarity=0.090 Sum_probs=57.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCccccCCcee---c----CCHHhhhc-----CCcEEEEccc
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARR---M----DTLNDLLA-----ASDVISLHCA 227 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~~~g~~~---~----~sL~eLL~-----~sDvVil~lP 227 (620)
.|.+|.|+|.|.||..+++.++.+|+ +|++.+++....+.....|... . .++.+.+. ..|+|+.++.
T Consensus 191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g 270 (374)
T 2jhf_A 191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIG 270 (374)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEECCC
Confidence 58899999999999999999999999 8999998765433222222211 1 12322222 3677777775
Q ss_pred CChhhHhhcCHHHhhccCCC-cEEEEcCC
Q 007040 228 VTDETIQIINAECLQHIKPG-AFLVNTGS 255 (620)
Q Consensus 228 lT~~T~~lI~~~~L~~MK~g-AiLINvgR 255 (620)
..+. -...+..++++ ..+|.+|-
T Consensus 271 ~~~~-----~~~~~~~l~~~~G~iv~~G~ 294 (374)
T 2jhf_A 271 RLDT-----MVTALSCCQEAYGVSVIVGV 294 (374)
T ss_dssp CHHH-----HHHHHHHBCTTTCEEEECSC
T ss_pred CHHH-----HHHHHHHhhcCCcEEEEecc
Confidence 3211 12346667777 77777653
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=95.22 E-value=0.011 Score=64.77 Aligned_cols=67 Identities=16% Similarity=0.202 Sum_probs=49.8
Q ss_pred cEEEEEeC----ChhhHHHHHHHhhC--CCEEE-EECCCCCCCCcc-ccCCc---eecCCHHhhhc--CCcEEEEcccCC
Q 007040 163 LVLGIVGR----SASARALATRSLSF--KMSVL-YFDVPEGKGKVT-FPSAA---RRMDTLNDLLA--ASDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIGl----G~IG~~vA~~Lkaf--G~~V~-~~dr~~~~~~~~-~~~g~---~~~~sL~eLL~--~sDvVil~lPlT 229 (620)
.+|||||+ |.||...++.|+.. +++|. ++|++....... ...++ ..+.+++++++ +.|+|++++|..
T Consensus 40 irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~tp~~ 119 (479)
T 2nvw_A 40 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVKVP 119 (479)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSCHH
T ss_pred CEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcCCcH
Confidence 57999999 99999999999876 77765 778876432211 11122 35679999996 689999999944
|
| >1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.037 Score=58.24 Aligned_cols=95 Identities=9% Similarity=0.083 Sum_probs=70.9
Q ss_pred ecCcEEEEEeCC--hhhHHHHHHHhhCCCEEEEECCCCCCCCccc---------cCC--ceecCCHHhhhcCCcEEEEcc
Q 007040 160 CRGLVLGIVGRS--ASARALATRSLSFKMSVLYFDVPEGKGKVTF---------PSA--ARRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 160 L~GktVGIIGlG--~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~---------~~g--~~~~~sL~eLL~~sDvVil~l 226 (620)
+.|.+|++||=| +++.+++..+..||++|.+..|..-.....+ ..| +....++++.++.+|||..-.
T Consensus 153 l~gl~ia~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd~ 232 (333)
T 1duv_G 153 FNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDV 232 (333)
T ss_dssp GGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEECC
T ss_pred CCCcEEEEECCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEECHHHHhCCCCEEEeCC
Confidence 689999999986 9999999999999999999998653322111 223 345689999999999999843
Q ss_pred cCC--------hh-----hHhhcCHHHhhcc-CCCcEEEEcC
Q 007040 227 AVT--------DE-----TIQIINAECLQHI-KPGAFLVNTG 254 (620)
Q Consensus 227 PlT--------~~-----T~~lI~~~~L~~M-K~gAiLINvg 254 (620)
=.. .+ ..--|+.+.++.+ ||+++|.-+.
T Consensus 233 w~smg~~~~~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcL 274 (333)
T 1duv_G 233 WVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCL 274 (333)
T ss_dssp SSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred ccccCccccchHHHHHHhhccccCHHHHHhccCCCcEEECCC
Confidence 310 11 1134688999999 9999988874
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.032 Score=57.05 Aligned_cols=35 Identities=20% Similarity=0.104 Sum_probs=31.0
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 161 RGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
..++|.|+|. |.||+.+++.|...|++|++++|..
T Consensus 9 ~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~ 44 (346)
T 3i6i_A 9 PKGRVLIAGATGFIGQFVATASLDAHRPTYILARPG 44 (346)
T ss_dssp --CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence 3578999997 9999999999999999999999976
|
| >3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ... | Back alignment and structure |
|---|
Probab=95.17 E-value=0.045 Score=57.09 Aligned_cols=95 Identities=11% Similarity=0.140 Sum_probs=66.8
Q ss_pred ecCcEEEEEeC---ChhhHHHHHHHhhC-CCEEEEECCCCCCCCccc-----cCC--ceecCCHHhhhcCCcEEEEcccC
Q 007040 160 CRGLVLGIVGR---SASARALATRSLSF-KMSVLYFDVPEGKGKVTF-----PSA--ARRMDTLNDLLAASDVISLHCAV 228 (620)
Q Consensus 160 L~GktVGIIGl---G~IG~~vA~~Lkaf-G~~V~~~dr~~~~~~~~~-----~~g--~~~~~sL~eLL~~sDvVil~lPl 228 (620)
+.|.+|++||= |++..+++..+..| |++|.+..|..-...... ..| +....+++++++.+|||..-.=.
T Consensus 152 l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q 231 (310)
T 3csu_A 152 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQ 231 (310)
T ss_dssp SSSCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCGGGTTTTCSEEEECC--
T ss_pred cCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCcc
Confidence 68999999998 59999999999999 999999998653322111 112 33457899999999999886432
Q ss_pred Ch----hh------HhhcCHHHhhccCCCcEEEEcC
Q 007040 229 TD----ET------IQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 229 T~----~T------~~lI~~~~L~~MK~gAiLINvg 254 (620)
.+ +. .--++.+.++.+||+++|.-+.
T Consensus 232 ~er~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~l 267 (310)
T 3csu_A 232 KERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPL 267 (310)
T ss_dssp ---------------CCBCGGGGTTCCTTCEEECCS
T ss_pred ccccCHHHHHHHhhccCCCHHHHhhcCCCCEEECCC
Confidence 11 11 1235777777778887777653
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.0098 Score=61.39 Aligned_cols=67 Identities=12% Similarity=0.149 Sum_probs=47.9
Q ss_pred cEEEEEeCChhhHH-HHHHHhhC-CCEEE-EECCCCCCCCcc-ccCCc-eecCCHHhhhcC--CcEEEEcccCC
Q 007040 163 LVLGIVGRSASARA-LATRSLSF-KMSVL-YFDVPEGKGKVT-FPSAA-RRMDTLNDLLAA--SDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIGlG~IG~~-vA~~Lkaf-G~~V~-~~dr~~~~~~~~-~~~g~-~~~~sL~eLL~~--sDvVil~lPlT 229 (620)
.+|||||+|.||+. ++..++.. +++|. ++|+++...... ...++ ..+.+++++|++ .|+|++++|..
T Consensus 24 irigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~~ 97 (350)
T 4had_A 24 LRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPTS 97 (350)
T ss_dssp EEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCGG
T ss_pred cEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCCc
Confidence 37999999999985 56777765 77876 578876433211 11233 356899999965 79999999965
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.064 Score=54.64 Aligned_cols=107 Identities=10% Similarity=0.141 Sum_probs=76.2
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCCh---------
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTD--------- 230 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~--------- 230 (620)
+.|++|.|+|.......+++.|...|++|.++...... ....+.....++.+.++++|+|++-.|...
T Consensus 5 ~~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~---~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~ 81 (300)
T 2rir_A 5 LTGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQLD---HGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVF 81 (300)
T ss_dssp CCSCEEEEESBCHHHHHHHHHHHHTTCEEEEESCTTSS---CCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSS
T ss_pred ccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeccccc---cccccceeccchHHHHhcCCEEEeccccccCCccccccc
Confidence 57889999999999999999999999999887422111 112334445567788899999997444321
Q ss_pred -hhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 231 -ETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 231 -~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
.+...++++.++.++++.+++ ++- |..++.+++.+..|.
T Consensus 82 a~~~~~~~~~~l~~~~~l~~i~-~g~----~~~d~~~~~~~~gi~ 121 (300)
T 2rir_A 82 SNEEVVLKQDHLDRTPAHCVIF-SGI----SNAYLENIAAQAKRK 121 (300)
T ss_dssp CSSCEECCHHHHHTSCTTCEEE-ESS----CCHHHHHHHHHTTCC
T ss_pred ccCCccchHHHHhhcCCCCEEE-Eec----CCHHHHHHHHHCCCE
Confidence 122347888999999998888 432 777766777766665
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=95.16 E-value=0.012 Score=60.81 Aligned_cols=91 Identities=12% Similarity=0.126 Sum_probs=59.9
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCcee---c--CCHHhh----hcCCcEEEEcccCChh
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR---M--DTLNDL----LAASDVISLHCAVTDE 231 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~---~--~sL~eL----L~~sDvVil~lPlT~~ 231 (620)
.|.+|.|+|.|.||..+++.++.+|++|++.+++....+.....+... . .++.+. ....|+|+.++...+.
T Consensus 164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g~~~~ 243 (339)
T 1rjw_A 164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPA 243 (339)
T ss_dssp TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCCHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEECCCCHHH
Confidence 578999999999999999999999999999998754322111122211 0 122221 2357888887764221
Q ss_pred hHhhcCHHHhhccCCCcEEEEcCCC
Q 007040 232 TIQIINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 232 T~~lI~~~~L~~MK~gAiLINvgRG 256 (620)
-...+..|+++..+|.+|..
T Consensus 244 -----~~~~~~~l~~~G~~v~~g~~ 263 (339)
T 1rjw_A 244 -----FQSAYNSIRRGGACVLVGLP 263 (339)
T ss_dssp -----HHHHHHHEEEEEEEEECCCC
T ss_pred -----HHHHHHHhhcCCEEEEeccc
Confidence 13456777888888887653
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.025 Score=56.26 Aligned_cols=38 Identities=18% Similarity=0.135 Sum_probs=34.0
Q ss_pred eecCcEEEEEeC---ChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 159 RCRGLVLGIVGR---SASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 159 ~L~GktVGIIGl---G~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
.+.|+++.|.|. |.||+++|+.|...|++|++.+++..
T Consensus 3 ~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~ 43 (275)
T 2pd4_A 3 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES 43 (275)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 367899999997 69999999999999999999998763
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.017 Score=59.77 Aligned_cols=91 Identities=15% Similarity=0.195 Sum_probs=58.7
Q ss_pred EEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCc---c-------c--cCCceecCCHHhhhcCCcEEEEcccCCh
Q 007040 164 VLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKV---T-------F--PSAARRMDTLNDLLAASDVISLHCAVTD 230 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~---~-------~--~~g~~~~~sL~eLL~~sDvVil~lPlT~ 230 (620)
+|+|||.|.||..+|..+...|+ +|..+|........ . . ...+....+. +.++.||+|+++.+...
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~ag~~~ 79 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTAGIGR 79 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCCC
T ss_pred CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeCCCCC
Confidence 58999999999999999886677 79999987632220 0 0 1112222455 67899999999976543
Q ss_pred h-----------hHhhcC--HHHhhccCCCcEEEEcCC
Q 007040 231 E-----------TIQIIN--AECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 231 ~-----------T~~lI~--~~~L~~MK~gAiLINvgR 255 (620)
. +..++- .+.+....|++++|+++-
T Consensus 80 k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 117 (308)
T 2d4a_B 80 KPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTN 117 (308)
T ss_dssp CSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 1 111121 112333358999999854
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=95.13 E-value=0.051 Score=57.43 Aligned_cols=102 Identities=9% Similarity=0.072 Sum_probs=61.9
Q ss_pred CcEEEEEe-CChhhHHHHHHHhhCC-CEEEEECCCCCCCCcccc------CCc----eecCCHHhhhcCCcEEEEcccCC
Q 007040 162 GLVLGIVG-RSASARALATRSLSFK-MSVLYFDVPEGKGKVTFP------SAA----RRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 162 GktVGIIG-lG~IG~~vA~~LkafG-~~V~~~dr~~~~~~~~~~------~g~----~~~~sL~eLL~~sDvVil~lPlT 229 (620)
..+|||+| +|.||+.+++.|.... ++|.++........ .+. .+. ....+ ++.+..+|+|++|+|..
T Consensus 16 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~-~~~~~~~~~~~~v~~dl~~~~-~~~~~~vDvVf~atp~~ 93 (359)
T 1xyg_A 16 DIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQ-SMESVFPHLRAQKLPTLVSVK-DADFSTVDAVFCCLPHG 93 (359)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTS-CHHHHCGGGTTSCCCCCBCGG-GCCGGGCSEEEECCCTT
T ss_pred CcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCC-CHHHhCchhcCcccccceecc-hhHhcCCCEEEEcCCch
Confidence 36899999 9999999999998765 48887765432221 110 110 01112 45667899999999965
Q ss_pred hhhHhhcCHHHhhccCCCcEEEEcCCChhhc-HHHHHHHHHcC
Q 007040 230 DETIQIINAECLQHIKPGAFLVNTGSSQLLD-DCAVKQLLIDG 271 (620)
Q Consensus 230 ~~T~~lI~~~~L~~MK~gAiLINvgRG~vVD-e~AL~~AL~~G 271 (620)
.. ... .-.. +.|+.+|+.+-.-=.+ .+...+.....
T Consensus 94 ~s-~~~----a~~~-~aG~~VId~sa~~R~~~~~~y~~~y~~~ 130 (359)
T 1xyg_A 94 TT-QEI----IKEL-PTALKIVDLSADFRLRNIAEYEEWYGQP 130 (359)
T ss_dssp TH-HHH----HHTS-CTTCEEEECSSTTTCSCHHHHHHHHSSC
T ss_pred hH-HHH----HHHH-hCCCEEEECCccccCCchhhhhhhhcCC
Confidence 32 111 1223 7799999987643333 34444444433
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.029 Score=59.03 Aligned_cols=88 Identities=9% Similarity=0.074 Sum_probs=52.7
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCC-CEEEEECCC-CCCCCcc---ccC--------C---c-eecCCHHhhhc-CCcEEE
Q 007040 163 LVLGIVG-RSASARALATRSLSFK-MSVLYFDVP-EGKGKVT---FPS--------A---A-RRMDTLNDLLA-ASDVIS 223 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG-~~V~~~dr~-~~~~~~~---~~~--------g---~-~~~~sL~eLL~-~sDvVi 223 (620)
.+|||+| +|.||+.+++.|.... ++|.++.++ ....... ... + . ....++++++. .+|+|+
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~ 88 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFEDVDIVF 88 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGGTTCCEEE
T ss_pred ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhcCCCCEEE
Confidence 4799999 9999999999998764 688776422 1121100 000 0 0 01124556656 899999
Q ss_pred EcccCChhhHhhcCHHHhhccCCCcEEEEcCC
Q 007040 224 LHCAVTDETIQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 224 l~lPlT~~T~~lI~~~~L~~MK~gAiLINvgR 255 (620)
+|+|... +..+. . ..++.|+.+|+.+-
T Consensus 89 ~atp~~~-~~~~a-~---~~~~aG~~VId~s~ 115 (354)
T 1ys4_A 89 SALPSDL-AKKFE-P---EFAKEGKLIFSNAS 115 (354)
T ss_dssp ECCCHHH-HHHHH-H---HHHHTTCEEEECCS
T ss_pred ECCCchH-HHHHH-H---HHHHCCCEEEECCc
Confidence 9999542 12221 1 22346788888764
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.032 Score=57.34 Aligned_cols=74 Identities=16% Similarity=0.129 Sum_probs=50.3
Q ss_pred cceeecCcEEEEEe-CChhhHHHHHHHhhC-CCEEEEECCCCCCCCcccc-CCce--------ecCCHHhhhcCCcEEEE
Q 007040 156 GMRRCRGLVLGIVG-RSASARALATRSLSF-KMSVLYFDVPEGKGKVTFP-SAAR--------RMDTLNDLLAASDVISL 224 (620)
Q Consensus 156 ~~~~L~GktVGIIG-lG~IG~~vA~~Lkaf-G~~V~~~dr~~~~~~~~~~-~g~~--------~~~sL~eLL~~sDvVil 224 (620)
++..+.+++|.|.| .|-||+.+++.|... |++|++++++......... .++. ....+.+++..+|+|+.
T Consensus 18 ~~~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih 97 (372)
T 3slg_A 18 GPGSMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVILP 97 (372)
T ss_dssp -----CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEE
T ss_pred CCcccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEE
Confidence 44567889999999 699999999999987 9999999998654332111 1111 12235667888999998
Q ss_pred cccCC
Q 007040 225 HCAVT 229 (620)
Q Consensus 225 ~lPlT 229 (620)
+....
T Consensus 98 ~A~~~ 102 (372)
T 3slg_A 98 LVAIA 102 (372)
T ss_dssp CBCCC
T ss_pred cCccc
Confidence 66543
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=95.09 E-value=0.026 Score=61.61 Aligned_cols=106 Identities=18% Similarity=0.223 Sum_probs=68.7
Q ss_pred CcEEEEEeCChh-hHHHHHHHhh----C-CCEEEEECCCC--CCCC--------c--c--ccCCceecCCHHhhhcCCcE
Q 007040 162 GLVLGIVGRSAS-ARALATRSLS----F-KMSVLYFDVPE--GKGK--------V--T--FPSAARRMDTLNDLLAASDV 221 (620)
Q Consensus 162 GktVGIIGlG~I-G~~vA~~Lka----f-G~~V~~~dr~~--~~~~--------~--~--~~~g~~~~~sL~eLL~~sDv 221 (620)
.++|+|||.|.. |.+++..|.. + +.+|..||+.. .... . . .+..+....++.+.++.||+
T Consensus 7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~gAD~ 86 (450)
T 1s6y_A 7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADF 86 (450)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCCCCE
Confidence 468999999999 8887666654 3 66899999977 3211 0 1 11223334678889999999
Q ss_pred EEEcccCChh---hH----------------------------hhc--CHHHhhccCCCcEEEEcCCChhhcHHHHHHH
Q 007040 222 ISLHCAVTDE---TI----------------------------QII--NAECLQHIKPGAFLVNTGSSQLLDDCAVKQL 267 (620)
Q Consensus 222 Vil~lPlT~~---T~----------------------------~lI--~~~~L~~MK~gAiLINvgRG~vVDe~AL~~A 267 (620)
|++++|.... ++ .++ -.+.+....|+|+|||++-.-=+-..++.+.
T Consensus 87 VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tNPvdivT~a~~k~ 165 (450)
T 1s6y_A 87 VTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRY 165 (450)
T ss_dssp EEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHH
T ss_pred EEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHh
Confidence 9999995421 11 111 0134455578999999987654555555554
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=95.08 E-value=0.032 Score=56.04 Aligned_cols=70 Identities=11% Similarity=0.063 Sum_probs=49.9
Q ss_pred ecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCC--------------ccc-cCCceecCCHHhhhcCCcEEE
Q 007040 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGK--------------VTF-PSAARRMDTLNDLLAASDVIS 223 (620)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~--------------~~~-~~g~~~~~sL~eLL~~sDvVi 223 (620)
+.|++|.|.|. |.||+.+++.|...|++|++++++..... ... .........+.+++...|+|+
T Consensus 9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 88 (342)
T 1y1p_A 9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVA 88 (342)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEEE
Confidence 57899999987 99999999999999999999998642210 000 111122345667777899998
Q ss_pred EcccCC
Q 007040 224 LHCAVT 229 (620)
Q Consensus 224 l~lPlT 229 (620)
.+....
T Consensus 89 h~A~~~ 94 (342)
T 1y1p_A 89 HIASVV 94 (342)
T ss_dssp ECCCCC
T ss_pred EeCCCC
Confidence 877543
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.032 Score=55.21 Aligned_cols=67 Identities=4% Similarity=0.024 Sum_probs=49.1
Q ss_pred cEEEEEe-CChhhHHHHHHHhhC-CCEEEEECCCCCCCCccccCCce-------ecCCHHhhhcCCcEEEEcccCC
Q 007040 163 LVLGIVG-RSASARALATRSLSF-KMSVLYFDVPEGKGKVTFPSAAR-------RMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~Lkaf-G~~V~~~dr~~~~~~~~~~~g~~-------~~~sL~eLL~~sDvVil~lPlT 229 (620)
++|.|.| .|.||+.+++.|... |++|++.+|+..........++. ..+++.+++..+|+|+.+.+..
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~ 76 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSII 76 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCCC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCCC
Confidence 4688998 599999999999987 99999999886543321112221 2235677899999999887754
|
| >3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.11 Score=54.54 Aligned_cols=95 Identities=15% Similarity=0.077 Sum_probs=68.1
Q ss_pred ecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-----------cCCceecCCHHhhhcCCcEEEEccc
Q 007040 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTF-----------PSAARRMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~-----------~~g~~~~~sL~eLL~~sDvVil~lP 227 (620)
+.|.+|+|||= +++..+++..+..+|++|.+..|..-.....+ ...+....+++++++.+|||..-.=
T Consensus 155 l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~eav~~aDvvyt~~w 234 (323)
T 3gd5_A 155 LAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILYTDVW 234 (323)
T ss_dssp CTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCC
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEECCHHHHhcCCCEEEEece
Confidence 68999999986 67888899899999999999998653322111 1224456799999999999987542
Q ss_pred CCh----------hh--HhhcCHHHhhccCCCcEEEEcC
Q 007040 228 VTD----------ET--IQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 228 lT~----------~T--~~lI~~~~L~~MK~gAiLINvg 254 (620)
... +. .--++.+.++.+||+++|.-+.
T Consensus 235 qs~g~~~~~~~~~~~~~~y~vt~ell~~ak~dai~mHcl 273 (323)
T 3gd5_A 235 TSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHCL 273 (323)
T ss_dssp C---------CCHHHHTTCCBCHHHHHTSCTTCEEEECS
T ss_pred ecCCCcccchHHHHHhhccCCCHHHHhhcCCCcEEECCC
Confidence 110 00 1246888888888888888764
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=95.05 E-value=0.053 Score=61.30 Aligned_cols=130 Identities=13% Similarity=0.141 Sum_probs=85.9
Q ss_pred CcEEEEcCCC-ChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHh
Q 007040 104 GLRLIHVDTS-RAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSL 182 (620)
Q Consensus 104 GI~VtNtpg~-~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~Lk 182 (620)
+-++++-... .....||.++-+-|.++|- .-|.. .+...|++.+|.|||+|.+|..+|+.|.
T Consensus 284 ~~~~~~l~~~~dp~~la~~~~~Lnlklm~w-----------Rllp~------~g~ekL~~arVLIVGaGGLGs~vA~~La 346 (615)
T 4gsl_A 284 APRVVDLSSLLDPLKIADQSVDLNLKLMKW-----------RILPD------LNLDIIKNTKVLLLGAGTLGCYVSRALI 346 (615)
T ss_dssp CCEEEECHHHHCHHHHHHHHHHHHHHHHHH-----------HTCTT------CCHHHHHTCEEEEECCSHHHHHHHHHHH
T ss_pred ceeEEeccccCCHHHHHhhhhhhhhHHHHH-----------hhcch------hhHHHHhCCeEEEECCCHHHHHHHHHHH
Confidence 3456665443 6778899888887776642 12321 2335789999999999999999999999
Q ss_pred hCCC-EEEEECCCCCCCC-------------------------ccccCCc--eec---------------------CCHH
Q 007040 183 SFKM-SVLYFDVPEGKGK-------------------------VTFPSAA--RRM---------------------DTLN 213 (620)
Q Consensus 183 afG~-~V~~~dr~~~~~~-------------------------~~~~~g~--~~~---------------------~sL~ 213 (620)
..|. ++..+|...-... ......+ ... +.+.
T Consensus 347 ~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iNP~V~v~~~~~~Ipm~gh~v~~e~~~~l~~~~l~ 426 (615)
T 4gsl_A 347 AWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLR 426 (615)
T ss_dssp HTTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEECCCCCCTTCCCSCHHHHHHHHHHHH
T ss_pred HcCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhCCCcEEEEeeccccccCccccchhhhcCCHHHHH
Confidence 9998 8999997541100 0000001 111 1356
Q ss_pred hhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcC
Q 007040 214 DLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 214 eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvg 254 (620)
+++..+|+|+.++- +.+++.+++...... +..+|+.+
T Consensus 427 ~ll~~~DlVvd~tD-n~~tR~~ln~~c~~~---~~PlI~aa 463 (615)
T 4gsl_A 427 ALIKEHDIIFLLVD-SRESRWLPSLLSNIE---NKTVINAA 463 (615)
T ss_dssp HHHHHCSEEEECCS-SGGGTHHHHHHHHHT---TCEEEEEE
T ss_pred HHhhcCCEEEecCC-CHHHHHHHHHHHHHc---CCeEEEEE
Confidence 77889999988764 667888888766553 44567754
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.02 Score=59.17 Aligned_cols=68 Identities=15% Similarity=0.173 Sum_probs=46.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhC--------CCEEE-EECCCCCCCCccc-cCCc-eecCCHHhhhcC--CcEEEEcccCC
Q 007040 163 LVLGIVGRSASARALATRSLSF--------KMSVL-YFDVPEGKGKVTF-PSAA-RRMDTLNDLLAA--SDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf--------G~~V~-~~dr~~~~~~~~~-~~g~-~~~~sL~eLL~~--sDvVil~lPlT 229 (620)
-+|||||+|.||+.-++.++++ +++|. ++|++........ ..++ ..+.+++++|++ .|+|++++|..
T Consensus 26 irvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~IatP~~ 105 (393)
T 4fb5_A 26 LGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVTTPNQ 105 (393)
T ss_dssp CEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEECSCGG
T ss_pred ccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEECCChH
Confidence 4799999999999877766543 56655 6688775543211 1233 356799999974 69999999965
Q ss_pred h
Q 007040 230 D 230 (620)
Q Consensus 230 ~ 230 (620)
-
T Consensus 106 ~ 106 (393)
T 4fb5_A 106 F 106 (393)
T ss_dssp G
T ss_pred H
Confidence 3
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=95.04 E-value=0.024 Score=61.02 Aligned_cols=67 Identities=15% Similarity=0.217 Sum_probs=49.8
Q ss_pred cEEEEEeC----ChhhHHHHHHHhhC--CCEE-EEECCCCCCCCccc-cCCc---eecCCHHhhhc--CCcEEEEcccCC
Q 007040 163 LVLGIVGR----SASARALATRSLSF--KMSV-LYFDVPEGKGKVTF-PSAA---RRMDTLNDLLA--ASDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIGl----G~IG~~vA~~Lkaf--G~~V-~~~dr~~~~~~~~~-~~g~---~~~~sL~eLL~--~sDvVil~lPlT 229 (620)
.+|||||+ |.||...++.++.. +++| .++|++........ ..++ ..+.+++++++ +.|+|++++|..
T Consensus 21 irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~tp~~ 100 (438)
T 3btv_A 21 IRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAIQVA 100 (438)
T ss_dssp EEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECSCHH
T ss_pred CEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeCCcH
Confidence 57999999 99999999999987 7876 47788764322111 1122 35679999997 589999999954
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.034 Score=57.95 Aligned_cols=90 Identities=13% Similarity=0.090 Sum_probs=59.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCccccCCcee---c----CCHHhhhc-----CCcEEEEccc
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARR---M----DTLNDLLA-----ASDVISLHCA 227 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~~~g~~~---~----~sL~eLL~-----~sDvVil~lP 227 (620)
.|.+|.|+|.|.||...++.++.+|. +|++.+++....+.....|... . .++.+.+. ..|+|+-++.
T Consensus 191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g 270 (373)
T 1p0f_A 191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAG 270 (373)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCC
Confidence 58899999999999999999999999 8999998765433222223211 1 12332222 4788888776
Q ss_pred CChhhHhhcCHHHhhccCCC-cEEEEcCC
Q 007040 228 VTDETIQIINAECLQHIKPG-AFLVNTGS 255 (620)
Q Consensus 228 lT~~T~~lI~~~~L~~MK~g-AiLINvgR 255 (620)
.. ++ + ...+..++++ ..+|.+|-
T Consensus 271 ~~-~~---~-~~~~~~l~~~~G~iv~~G~ 294 (373)
T 1p0f_A 271 RI-ET---M-MNALQSTYCGSGVTVVLGL 294 (373)
T ss_dssp CH-HH---H-HHHHHTBCTTTCEEEECCC
T ss_pred CH-HH---H-HHHHHHHhcCCCEEEEEcc
Confidence 32 11 1 3456777887 77777763
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.04 Score=55.23 Aligned_cols=67 Identities=12% Similarity=0.071 Sum_probs=48.4
Q ss_pred CcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCC----ccccCCceecCCHHhhhcCCcEEEEcccCC
Q 007040 162 GLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGK----VTFPSAARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 162 GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~----~~~~~g~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
+++|.|.| .|.||+.+++.|...|++|++.+|...... ........ .+.+.+++..+|+|+.+....
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~~~ 73 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKAINDYEYRVSDYT-LEDLINQLNDVDAVVHLAATR 73 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-----CCEEEECCCC-HHHHHHHTTTCSEEEECCCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCcccCCceEEEEcccc-HHHHHHhhcCCCEEEEccccC
Confidence 36899998 699999999999999999999999832211 00011112 345778888999999887654
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=95.02 E-value=0.028 Score=58.40 Aligned_cols=69 Identities=20% Similarity=0.266 Sum_probs=48.3
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCC--CEEEEECCCCCCCC------ccccCCcee---cCCHHhhhcCCcEEEEcccC
Q 007040 161 RGLVLGIVG-RSASARALATRSLSFK--MSVLYFDVPEGKGK------VTFPSAARR---MDTLNDLLAASDVISLHCAV 228 (620)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafG--~~V~~~dr~~~~~~------~~~~~g~~~---~~sL~eLL~~sDvVil~lPl 228 (620)
..++|+|+| .|.+|..++..|...| .+|..+|....... ......+.. ..++.+.+..||+|+++.+.
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag~ 86 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGV 86 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCCC
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCCc
Confidence 346899999 8999999999998878 78999997653110 001101111 23567889999999999864
Q ss_pred C
Q 007040 229 T 229 (620)
Q Consensus 229 T 229 (620)
.
T Consensus 87 ~ 87 (326)
T 1smk_A 87 P 87 (326)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.027 Score=58.21 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=34.6
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~ 195 (620)
...|++.+|.|||.|.+|..+|..|...|. ++..+|...
T Consensus 31 q~kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~ 70 (292)
T 3h8v_A 31 YEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK 70 (292)
T ss_dssp -CGGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred HHHHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 457899999999999999999999999997 899998754
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.043 Score=56.82 Aligned_cols=99 Identities=14% Similarity=0.240 Sum_probs=62.2
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCC--CEEEEECCCCCCCC-ccccC-----Ccee---cCCHHhhhcCCcEEEEcccCCh
Q 007040 163 LVLGIVGR-SASARALATRSLSFK--MSVLYFDVPEGKGK-VTFPS-----AARR---MDTLNDLLAASDVISLHCAVTD 230 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafG--~~V~~~dr~~~~~~-~~~~~-----g~~~---~~sL~eLL~~sDvVil~lPlT~ 230 (620)
++|+|||. |.+|..++..|...| .+|..+|....... ..+.. .... ..++++.+..||+|+++.....
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~ 80 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR 80 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcCC
Confidence 47999998 999999999999777 69999998761111 00111 1122 1368888999999999975432
Q ss_pred h---hH--------hhcC--HHHhhccCCCcEEEEcCCChhhcHHH
Q 007040 231 E---TI--------QIIN--AECLQHIKPGAFLVNTGSSQLLDDCA 263 (620)
Q Consensus 231 ~---T~--------~lI~--~~~L~~MK~gAiLINvgRG~vVDe~A 263 (620)
. ++ .++- .+.+....|++++|+++- .+|.-.
T Consensus 81 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sN--Pv~~~~ 124 (314)
T 1mld_A 81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN--PVNSTI 124 (314)
T ss_dssp CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS--CHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECC--CcchhH
Confidence 1 11 1110 122333458899999744 455444
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.039 Score=56.36 Aligned_cols=65 Identities=14% Similarity=0.159 Sum_probs=48.1
Q ss_pred cEEEEEe-CChhhHHHHHHHhh-CCCEEEE-ECCCCCCC--C---c--cccCCceecCCHHhhhcCCcEEEEccc
Q 007040 163 LVLGIVG-RSASARALATRSLS-FKMSVLY-FDVPEGKG--K---V--TFPSAARRMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~Lka-fG~~V~~-~dr~~~~~--~---~--~~~~g~~~~~sL~eLL~~sDvVil~lP 227 (620)
.+|+|+| +|+||+.+++.+.. -++++.+ +|+..... . . ....++....++++++.++|+|+-+.+
T Consensus 8 ikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVIDfT~ 82 (272)
T 4f3y_A 8 MKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDFTL 82 (272)
T ss_dssp EEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEEECSC
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEEEcCC
Confidence 5799999 99999999998874 4888776 68764321 1 0 011245556899999999999998875
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.055 Score=55.73 Aligned_cols=106 Identities=10% Similarity=0.042 Sum_probs=67.6
Q ss_pred CcEEEEEeC-ChhhHHHHHHHhhCCCE-EEEECCCCCCCCccccCCceecCCHHhhhc--C-CcEEEEcccCChhhHhhc
Q 007040 162 GLVLGIVGR-SASARALATRSLSFKMS-VLYFDVPEGKGKVTFPSAARRMDTLNDLLA--A-SDVISLHCAVTDETIQII 236 (620)
Q Consensus 162 GktVGIIGl-G~IG~~vA~~LkafG~~-V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~--~-sDvVil~lPlT~~T~~lI 236 (620)
..++.|+|. |++|+.+++.+...|++ |..++|.... . . ..+...+.+++++.. . .|++++++|.. .+...+
T Consensus 13 ~~~vvV~Gasg~~G~~~~~~l~~~g~~~v~~VnP~~~g-~-~-i~G~~vy~sl~el~~~~~~~DvaIi~vp~~-~~~~~v 88 (297)
T 2yv2_A 13 ETRVLVQGITGREGSFHAKAMLEYGTKVVAGVTPGKGG-S-E-VHGVPVYDSVKEALAEHPEINTSIVFVPAP-FAPDAV 88 (297)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTT-C-E-ETTEEEESSHHHHHHHCTTCCEEEECCCGG-GHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHhCCCcEEEEeCCCCCC-c-e-ECCEeeeCCHHHHhhcCCCCCEEEEecCHH-HHHHHH
Confidence 345777798 99999999999988998 4466654321 1 1 246677789999987 5 99999999953 333333
Q ss_pred CHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCc
Q 007040 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTL 273 (620)
Q Consensus 237 ~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I 273 (620)
. +.++.=.+..+++..+- ...+++.|.++.++..+
T Consensus 89 ~-ea~~~Gi~~vVi~t~G~-~~~~~~~l~~~A~~~gi 123 (297)
T 2yv2_A 89 Y-EAVDAGIRLVVVITEGI-PVHDTMRFVNYARQKGA 123 (297)
T ss_dssp H-HHHHTTCSEEEECCCCC-CHHHHHHHHHHHHHHTC
T ss_pred H-HHHHCCCCEEEEECCCC-CHHHHHHHHHHHHHcCC
Confidence 2 23332222233333332 23456778888877655
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.028 Score=58.54 Aligned_cols=90 Identities=14% Similarity=0.084 Sum_probs=59.3
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCccccCCcee---c----CCHHhhhc-----CCcEEEEccc
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARR---M----DTLNDLLA-----ASDVISLHCA 227 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~~~g~~~---~----~sL~eLL~-----~sDvVil~lP 227 (620)
.|.+|.|+|.|.||...++.++.+|+ +|++.+++....+.....|... . .++.+.+. ..|+|+.++.
T Consensus 190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~g 269 (373)
T 2fzw_A 190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIG 269 (373)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEECCC
Confidence 58899999999999999999999999 8999998765433222222211 1 12332222 4688887776
Q ss_pred CChhhHhhcCHHHhhccCCC-cEEEEcCC
Q 007040 228 VTDETIQIINAECLQHIKPG-AFLVNTGS 255 (620)
Q Consensus 228 lT~~T~~lI~~~~L~~MK~g-AiLINvgR 255 (620)
..+. -...+..++++ ..+|.+|-
T Consensus 270 ~~~~-----~~~~~~~l~~~~G~iv~~G~ 293 (373)
T 2fzw_A 270 NVKV-----MRAALEACHKGWGVSVVVGV 293 (373)
T ss_dssp CHHH-----HHHHHHTBCTTTCEEEECSC
T ss_pred cHHH-----HHHHHHhhccCCcEEEEEec
Confidence 3221 13456777887 77777763
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.04 Score=57.56 Aligned_cols=90 Identities=11% Similarity=0.081 Sum_probs=58.7
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCccccCCceec-------CCHHhhhc-----CCcEEEEccc
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARRM-------DTLNDLLA-----ASDVISLHCA 227 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~~~g~~~~-------~sL~eLL~-----~sDvVil~lP 227 (620)
.|.+|.|+|.|.||...++.++.+|+ +|++.+++....+.....|.... .++.+.+. ..|+|+-++.
T Consensus 195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G 274 (376)
T 1e3i_A 195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG 274 (376)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEECCC
Confidence 58899999999999999999999999 89999987654332222222111 12322221 4688887775
Q ss_pred CChhhHhhcCHHHhhccCCC-cEEEEcCC
Q 007040 228 VTDETIQIINAECLQHIKPG-AFLVNTGS 255 (620)
Q Consensus 228 lT~~T~~lI~~~~L~~MK~g-AiLINvgR 255 (620)
.. .+ + ...+..++++ ..+|.+|-
T Consensus 275 ~~-~~---~-~~~~~~l~~~~G~iv~~G~ 298 (376)
T 1e3i_A 275 TA-QT---L-KAAVDCTVLGWGSCTVVGA 298 (376)
T ss_dssp CH-HH---H-HHHHHTBCTTTCEEEECCC
T ss_pred CH-HH---H-HHHHHHhhcCCCEEEEECC
Confidence 32 11 1 3456777777 77777654
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=94.89 E-value=0.015 Score=58.73 Aligned_cols=88 Identities=16% Similarity=0.090 Sum_probs=57.3
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCcee---c---CCHHhhhcCCcEEEEcccCChhhH
Q 007040 161 RGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR---M---DTLNDLLAASDVISLHCAVTDETI 233 (620)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~---~---~sL~eLL~~sDvVil~lPlT~~T~ 233 (620)
.|.+|.|+|. |.||..+++.++.+|++|++.+++....+.....|... . .++.+.+...|+|+. +.. + +
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g~-~-~- 200 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VRG-K-E- 200 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CSC-T-T-
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CCH-H-H-
Confidence 5789999998 99999999999999999999998765433222222221 1 112222356788877 653 1 1
Q ss_pred hhcCHHHhhccCCCcEEEEcCC
Q 007040 234 QIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgR 255 (620)
-...+..|+++..+|.+|-
T Consensus 201 ---~~~~~~~l~~~G~~v~~g~ 219 (302)
T 1iz0_A 201 ---VEESLGLLAHGGRLVYIGA 219 (302)
T ss_dssp ---HHHHHTTEEEEEEEEEC--
T ss_pred ---HHHHHHhhccCCEEEEEeC
Confidence 1345677777777777653
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.035 Score=60.38 Aligned_cols=94 Identities=14% Similarity=0.175 Sum_probs=67.2
Q ss_pred eecCcEEEEEeCC----------hhhHHHHHHHhhCCCEEEEECCCCCCCC-ccccCCceecCCHHhhhcCCcEEEEccc
Q 007040 159 RCRGLVLGIVGRS----------ASARALATRSLSFKMSVLYFDVPEGKGK-VTFPSAARRMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 159 ~L~GktVGIIGlG----------~IG~~vA~~LkafG~~V~~~dr~~~~~~-~~~~~g~~~~~sL~eLL~~sDvVil~lP 227 (620)
.+.|++|+|+|+- .-...|++.|...|++|.+|||...... ..+...+....++.+.+..+|+|+++++
T Consensus 315 ~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~t~ 394 (450)
T 3gg2_A 315 NVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLEVGCRVRVYDPVAMKEAQKRLGDKVEYTTDMYDAVRGAEALFHVTE 394 (450)
T ss_dssp CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHGGGSEECSSHHHHTTTCSCEEECSC
T ss_pred cCCCCEEEEEeeeeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCcHHHHHhcCccceecCCHHHHhcCCCEEEEccC
Confidence 4789999999984 3478999999999999999999873211 1122224556788999999999999998
Q ss_pred CChhhHhhcCHHHh-hccCCCcEEEEcCCC
Q 007040 228 VTDETIQIINAECL-QHIKPGAFLVNTGSS 256 (620)
Q Consensus 228 lT~~T~~lI~~~~L-~~MK~gAiLINvgRG 256 (620)
..+ - .-++-+.+ +.|+ +.++||+ |+
T Consensus 395 ~~~-f-~~~~~~~~~~~~~-~~~i~D~-r~ 420 (450)
T 3gg2_A 395 WKE-F-RMPDWSALSQAMA-ASLVIDG-RN 420 (450)
T ss_dssp CGG-G-SSCCHHHHHHHSS-SCEEEES-SC
T ss_pred CHH-H-hhcCHHHHHHhcC-CCEEEEC-CC
Confidence 652 2 22344444 4465 6688884 54
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.026 Score=57.38 Aligned_cols=73 Identities=12% Similarity=0.071 Sum_probs=48.8
Q ss_pred ceeecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCC-ccccCCceecCCHHhhhcCCcEEEEcccCC
Q 007040 157 MRRCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGK-VTFPSAARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 157 ~~~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~-~~~~~g~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
...+.+++|.|.|. |.||+.+++.|...|++|+++++...... ............+.+++..+|+|+.+....
T Consensus 14 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~~ 88 (347)
T 4id9_A 14 LVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGSLEDGQALSDAIMGVSAVLHLGAFM 88 (347)
T ss_dssp -------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSEEESCTTCHHHHHHHHTTCSEEEECCCCC
T ss_pred ccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCCCccEEecCcCCHHHHHHHHhCCCEEEECCccc
Confidence 35688999999997 99999999999999999999998764311 111111122345678889999999877644
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.018 Score=59.85 Aligned_cols=90 Identities=17% Similarity=0.127 Sum_probs=61.7
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-cCCce---ecCC---HHhhhcCCcEEEEcccCChhhH
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF-PSAAR---RMDT---LNDLLAASDVISLHCAVTDETI 233 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~-~~g~~---~~~s---L~eLL~~sDvVil~lPlT~~T~ 233 (620)
.|.+|.|+|.|.||...++.++.+|++|++.+++........ ..|.. ...+ +.++....|+|+-++.....
T Consensus 180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~g~D~vid~~g~~~~-- 257 (357)
T 2cf5_A 180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHHA-- 257 (357)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHSTTTEEEEEECCCSCCC--
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHhcCCCCEEEECCCChHH--
Confidence 588999999999999999999999999999998764432211 22221 1222 22333457888888864321
Q ss_pred hhcCHHHhhccCCCcEEEEcCC
Q 007040 234 QIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgR 255 (620)
-...+..++++..+|.+|-
T Consensus 258 ---~~~~~~~l~~~G~iv~~G~ 276 (357)
T 2cf5_A 258 ---LEPYLSLLKLDGKLILMGV 276 (357)
T ss_dssp ---SHHHHTTEEEEEEEEECSC
T ss_pred ---HHHHHHHhccCCEEEEeCC
Confidence 2345677888888888864
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.023 Score=59.89 Aligned_cols=68 Identities=13% Similarity=0.115 Sum_probs=49.9
Q ss_pred ecCcEEEEEeC-ChhhHHHHHHHhhCCC--EEEEECCCCCCCC--------cccc-CCceecCCHHhhhcCCcEEEEccc
Q 007040 160 CRGLVLGIVGR-SASARALATRSLSFKM--SVLYFDVPEGKGK--------VTFP-SAARRMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafG~--~V~~~dr~~~~~~--------~~~~-~g~~~~~sL~eLL~~sDvVil~lP 227 (620)
+.+++|+|||. |.+|..+|..+..+|. +|..+|....... ..++ ..+....++.+.+++||+|+++..
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG 85 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGG 85 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccC
Confidence 35789999998 9999999998888884 8999998643111 0111 122334578888999999999863
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.034 Score=59.43 Aligned_cols=69 Identities=9% Similarity=0.106 Sum_probs=49.4
Q ss_pred CcEEEEEeCCh---hhHHHHHHHhhCC-CEEE--EECCCCCCCCcc-ccCCc---eecCCHHhhhcC-------CcEEEE
Q 007040 162 GLVLGIVGRSA---SARALATRSLSFK-MSVL--YFDVPEGKGKVT-FPSAA---RRMDTLNDLLAA-------SDVISL 224 (620)
Q Consensus 162 GktVGIIGlG~---IG~~vA~~LkafG-~~V~--~~dr~~~~~~~~-~~~g~---~~~~sL~eLL~~-------sDvVil 224 (620)
-.+|||||+|. ||...+..++..+ ++|. ++|+++...... ...++ ..+.+++++++. .|+|++
T Consensus 37 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~I 116 (417)
T 3v5n_A 37 RIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAVAI 116 (417)
T ss_dssp CEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEEEE
T ss_pred cceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEEEE
Confidence 35799999999 9999988887665 6765 568876433211 11233 456799999976 899999
Q ss_pred cccCCh
Q 007040 225 HCAVTD 230 (620)
Q Consensus 225 ~lPlT~ 230 (620)
++|...
T Consensus 117 ~tp~~~ 122 (417)
T 3v5n_A 117 VTPNHV 122 (417)
T ss_dssp CSCTTS
T ss_pred CCCcHH
Confidence 999663
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.011 Score=61.21 Aligned_cols=90 Identities=12% Similarity=0.061 Sum_probs=55.4
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCccccCCcee---c--CCHHhhh------cCCcEEEEcccC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARR---M--DTLNDLL------AASDVISLHCAV 228 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~~~g~~~---~--~sL~eLL------~~sDvVil~lPl 228 (620)
.|.+|.|+|.|.||..+++.++.+|+ +|++.+++....+.....|... . .++.+.+ ...|+|+.++..
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g~ 246 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGA 246 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECSCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence 68899999999999999999999999 9999998753322111112110 0 1222211 136777776653
Q ss_pred ChhhHhhcCHHHhhccCCCcEEEEcCC
Q 007040 229 TDETIQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 229 T~~T~~lI~~~~L~~MK~gAiLINvgR 255 (620)
.+.. ...+..|+++..+|.+|.
T Consensus 247 ~~~~-----~~~~~~l~~~G~iv~~g~ 268 (348)
T 2d8a_A 247 PKAL-----EQGLQAVTPAGRVSLLGL 268 (348)
T ss_dssp HHHH-----HHHHHHEEEEEEEEECCC
T ss_pred HHHH-----HHHHHHHhcCCEEEEEcc
Confidence 2111 234556666666666653
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.038 Score=55.01 Aligned_cols=34 Identities=15% Similarity=0.029 Sum_probs=30.7
Q ss_pred CcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 162 GLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 162 GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
+++|.|.|. |.||+.+++.|...|++|++.+|+.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 36 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKT 36 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCS
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCC
Confidence 467999995 9999999999999999999999875
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.027 Score=55.68 Aligned_cols=68 Identities=24% Similarity=0.147 Sum_probs=47.4
Q ss_pred CcEEEEEeCChhhHHHHHHH--hhCCCEEE-EECCCCC-CCCc-cc-cCCceecCCHHhhhcC--CcEEEEcccCC
Q 007040 162 GLVLGIVGRSASARALATRS--LSFKMSVL-YFDVPEG-KGKV-TF-PSAARRMDTLNDLLAA--SDVISLHCAVT 229 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~L--kafG~~V~-~~dr~~~-~~~~-~~-~~g~~~~~sL~eLL~~--sDvVil~lPlT 229 (620)
..+++|||.|++|+.+++.+ ...|+++. ++|..+. .... .. ...+...+++++++++ .|++++++|..
T Consensus 84 ~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~GvpV~~~~dL~~~v~~~~Id~vIIAvPs~ 159 (212)
T 3keo_A 84 TTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYGISTINDHLIDSDIETAILTVPST 159 (212)
T ss_dssp CEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTTCCBEEEGGGHHHHC-CCSCCEEEECSCGG
T ss_pred CCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeECCeEEeCHHHHHHHHHHcCCCEEEEecCch
Confidence 45799999999999999984 45688866 5677665 3222 11 1223345788888875 89999999954
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.084 Score=58.02 Aligned_cols=97 Identities=12% Similarity=0.222 Sum_probs=70.6
Q ss_pred eecCcEEEEEeCC----------hhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccC
Q 007040 159 RCRGLVLGIVGRS----------ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAV 228 (620)
Q Consensus 159 ~L~GktVGIIGlG----------~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPl 228 (620)
.+.|++|+|+|+- .-...|++.|...|++|.+|||.... ++ ......++++.+..+|+|+++++.
T Consensus 350 ~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~----~~-~~~~~~~~~~~~~~ad~vvi~t~~ 424 (478)
T 3g79_A 350 KMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVN----YP-GVEISDNLEEVVRNADAIVVLAGH 424 (478)
T ss_dssp CSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHHHHHTCEEEEECSSCCC----BT-TBCEESCHHHHHTTCSEEEECSCC
T ss_pred CCCCCEEEEEeeecCCCCcchhcCcHHHHHHHHHHCCCEEEEECCCccc----cc-CcceecCHHHHHhcCCEEEEecCC
Confidence 4789999999974 34689999999999999999998752 11 123356899999999999999985
Q ss_pred ChhhHhhcCHHH-hhccC-CCcEEEEcCCChhhcHHHH
Q 007040 229 TDETIQIINAEC-LQHIK-PGAFLVNTGSSQLLDDCAV 264 (620)
Q Consensus 229 T~~T~~lI~~~~-L~~MK-~gAiLINvgRG~vVDe~AL 264 (620)
. +-+ -++-+. .+.|+ +..++||+ |+ ++|.+.+
T Consensus 425 ~-~f~-~~d~~~~~~~~~~~~~~i~D~-rn-~~~~~~~ 458 (478)
T 3g79_A 425 S-AYS-SLKADWAKKVSAKANPVIIDG-RN-VIEPDEF 458 (478)
T ss_dssp H-HHH-SCCHHHHHHHHCCSSCEEEES-SS-CSCHHHH
T ss_pred H-HHH-hhhHHHHHHHhccCCCEEEEC-CC-CCCHHHH
Confidence 5 222 244443 44677 47899994 65 3455444
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.027 Score=59.65 Aligned_cols=95 Identities=12% Similarity=0.021 Sum_probs=56.2
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCccccCCceec-----CCHH----hhhc--CCcEEEEcccC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARRM-----DTLN----DLLA--ASDVISLHCAV 228 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~~~g~~~~-----~sL~----eLL~--~sDvVil~lPl 228 (620)
.|.+|.|+|.|.||...++.++.+|+ +|++.+++....+.....|.... .++. ++.. ..|+|+-++..
T Consensus 213 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~g~ 292 (404)
T 3ip1_A 213 PGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEATGV 292 (404)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEECSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEECCCC
Confidence 68899999999999999999999999 99999987643331111222110 1221 1211 36777777764
Q ss_pred ChhhHhhcCHHHhhccCCCcEEEEcCC
Q 007040 229 TDETIQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 229 T~~T~~lI~~~~L~~MK~gAiLINvgR 255 (620)
...+...+-.-+...++++..+|.+|-
T Consensus 293 ~~~~~~~~~~~l~~~~~~~G~iv~~G~ 319 (404)
T 3ip1_A 293 PQLVWPQIEEVIWRARGINATVAIVAR 319 (404)
T ss_dssp HHHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred cHHHHHHHHHHHHhccCCCcEEEEeCC
Confidence 322221111111122377777777764
|
| >3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.067 Score=56.87 Aligned_cols=93 Identities=18% Similarity=0.190 Sum_probs=67.1
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHh
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECL 241 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L 241 (620)
-.++.|+|.|.+|+++|+.++.+|++|+++|+++.... .+-+..+|-|+..-| .+.+
T Consensus 199 ~~~L~I~GaGhva~aLa~la~~lgf~V~v~D~R~~~~~-------------~~~fp~a~~v~~~~p----------~~~~ 255 (362)
T 3on5_A 199 KERLIIFGAGPDVPPLVTFASNVGFYTVVTDWRPNQCE-------------KHFFPDADEIIVDFP----------ADFL 255 (362)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHHTEEEEEEESCGGGGC-------------GGGCTTCSEEEESCH----------HHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEECCCccccc-------------cccCCCceEEecCCH----------HHHH
Confidence 34699999999999999999999999999998763211 122345665555444 1123
Q ss_pred hc--cCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEe
Q 007040 242 QH--IKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCAL 278 (620)
Q Consensus 242 ~~--MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaL 278 (620)
.. +.+++.+|=+.++.-.|...|..+|+. .....++
T Consensus 256 ~~~~~~~~t~vvv~TH~h~~D~~~L~~aL~~-~~~YiG~ 293 (362)
T 3on5_A 256 RKFLIRPDDFVLIMTHHFQKDQEILHFLLEK-ELRYIGI 293 (362)
T ss_dssp HHSCCCTTCEEEECCSCHHHHHHHHHHHSSS-CCSEEEE
T ss_pred hhcCCCCCeEEEEEeCCchhhHHHHHHHhcC-CCCEEEE
Confidence 33 667888888899999999999998876 4443443
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=94.77 E-value=0.063 Score=55.74 Aligned_cols=94 Identities=12% Similarity=0.161 Sum_probs=60.6
Q ss_pred CcEEEEEeC-ChhhHHHHHHHhhCCC-------EEEEECCC----CC----------CCCccccCCceecCCHHhhhcCC
Q 007040 162 GLVLGIVGR-SASARALATRSLSFKM-------SVLYFDVP----EG----------KGKVTFPSAARRMDTLNDLLAAS 219 (620)
Q Consensus 162 GktVGIIGl-G~IG~~vA~~LkafG~-------~V~~~dr~----~~----------~~~~~~~~g~~~~~sL~eLL~~s 219 (620)
.++|.|+|. |.||..++..|...|+ +|..+|+. .. +....+...+....++.+.++.|
T Consensus 5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~a 84 (329)
T 1b8p_A 5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKDA 84 (329)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTTC
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCCC
Confidence 468999997 9999999999988775 89999987 21 10001111223346788999999
Q ss_pred cEEEEcccCChh---hHh-hc--C-------HHHhhcc-CCCcEEEEcCC
Q 007040 220 DVISLHCAVTDE---TIQ-II--N-------AECLQHI-KPGAFLVNTGS 255 (620)
Q Consensus 220 DvVil~lPlT~~---T~~-lI--~-------~~~L~~M-K~gAiLINvgR 255 (620)
|+|+++...... ++. ++ | .+.+... +|.++||+++-
T Consensus 85 D~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SN 134 (329)
T 1b8p_A 85 DVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGN 134 (329)
T ss_dssp SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccC
Confidence 999987653321 110 10 1 1223334 47889999974
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.039 Score=56.09 Aligned_cols=72 Identities=15% Similarity=0.054 Sum_probs=47.7
Q ss_pred eeecCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc--CCc-------eecCCHHhhhcC--CcEEEEc
Q 007040 158 RRCRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFP--SAA-------RRMDTLNDLLAA--SDVISLH 225 (620)
Q Consensus 158 ~~L~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~--~g~-------~~~~sL~eLL~~--sDvVil~ 225 (620)
..+.+++|.|.| .|.||+.+++.|...|++|+++++.......... .++ ...+.+.+++.. .|+|+.+
T Consensus 17 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih~ 96 (333)
T 2q1w_A 17 RGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVHT 96 (333)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred ecCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhccCCcEEEEC
Confidence 457889999998 6999999999999999999999987533211110 111 111235566766 8998887
Q ss_pred ccCC
Q 007040 226 CAVT 229 (620)
Q Consensus 226 lPlT 229 (620)
....
T Consensus 97 A~~~ 100 (333)
T 2q1w_A 97 AASY 100 (333)
T ss_dssp CCCC
T ss_pred ceec
Confidence 7543
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=94.73 E-value=0.034 Score=58.63 Aligned_cols=39 Identities=8% Similarity=0.137 Sum_probs=34.9
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~ 195 (620)
...|.+++|.|||.|.+|..+|..|...|. ++..+|...
T Consensus 113 q~~L~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~ 152 (353)
T 3h5n_A 113 QDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ 152 (353)
T ss_dssp HHHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred HHHHhCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence 357899999999999999999999999998 888888753
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.02 Score=59.57 Aligned_cols=97 Identities=8% Similarity=0.067 Sum_probs=60.5
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCC-cccc--CCc--------eecCCHHhhhcCCcEEEEcccC
Q 007040 161 RGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGK-VTFP--SAA--------RRMDTLNDLLAASDVISLHCAV 228 (620)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~-~~~~--~g~--------~~~~sL~eLL~~sDvVil~lPl 228 (620)
.+++|.|.| .|.||+.+++.|...|++|++.+|+..... .... .++ ...+++.+++..+|+|+.++..
T Consensus 4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~~ 83 (352)
T 1xgk_A 4 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS 83 (352)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCCC
Confidence 367899998 599999999999999999999998764320 0000 011 1122366778899999977654
Q ss_pred ChhhHhhcCHHHhhccCC-C--cEEEEcCCCh
Q 007040 229 TDETIQIINAECLQHIKP-G--AFLVNTGSSQ 257 (620)
Q Consensus 229 T~~T~~lI~~~~L~~MK~-g--AiLINvgRG~ 257 (620)
............+..++. | ..||++|...
T Consensus 84 ~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~~ 115 (352)
T 1xgk_A 84 QAGDEIAIGKDLADAAKRAGTIQHYIYSSMPD 115 (352)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCCSEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHcCCccEEEEeCCcc
Confidence 311112222334444422 3 4788887753
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.026 Score=58.29 Aligned_cols=90 Identities=12% Similarity=0.072 Sum_probs=59.3
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCce---e---cCCHHhhhc-----CCcEEEEcccC
Q 007040 161 RGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR---R---MDTLNDLLA-----ASDVISLHCAV 228 (620)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~---~---~~sL~eLL~-----~sDvVil~lPl 228 (620)
.|++|.|+|. |.||..+++.++..|++|++.+++....+.....+.. . ..++.+.+. ..|+|+.++..
T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~ 248 (347)
T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVS 248 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECSSC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEECCCc
Confidence 5889999999 8999999999999999999999876433211111211 1 123333332 46888877763
Q ss_pred ChhhHhhcCHHHhhccCCCcEEEEcCC
Q 007040 229 TDETIQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 229 T~~T~~lI~~~~L~~MK~gAiLINvgR 255 (620)
.+. -...+..|+++..+|++|.
T Consensus 249 ~~~-----~~~~~~~l~~~G~iv~~g~ 270 (347)
T 2hcy_A 249 EAA-----IEASTRYVRANGTTVLVGM 270 (347)
T ss_dssp HHH-----HHHHTTSEEEEEEEEECCC
T ss_pred HHH-----HHHHHHHHhcCCEEEEEeC
Confidence 221 1345667788888888765
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=94.68 E-value=0.03 Score=56.55 Aligned_cols=36 Identities=8% Similarity=-0.057 Sum_probs=33.7
Q ss_pred ecCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 160 CRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 160 L~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
+.|+++.|+| .|.||+++|..|...|++|++++|+.
T Consensus 117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~ 153 (287)
T 1lu9_A 117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL 153 (287)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCH
Confidence 5789999999 99999999999999999999999875
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.018 Score=60.23 Aligned_cols=68 Identities=16% Similarity=0.146 Sum_probs=49.3
Q ss_pred CcEEEEEeCChhhH-HHHHHHhhCCCEEE-EECCCCCCCCcc-ccCC-ceecCCHHhhhcC--CcEEEEcccCC
Q 007040 162 GLVLGIVGRSASAR-ALATRSLSFKMSVL-YFDVPEGKGKVT-FPSA-ARRMDTLNDLLAA--SDVISLHCAVT 229 (620)
Q Consensus 162 GktVGIIGlG~IG~-~vA~~LkafG~~V~-~~dr~~~~~~~~-~~~g-~~~~~sL~eLL~~--sDvVil~lPlT 229 (620)
-.+|||||+|.||. .++..+..-+++|. ++|+++...... ...+ ...+.++++++++ .|+|++++|..
T Consensus 26 ~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~ 99 (361)
T 3u3x_A 26 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSS 99 (361)
T ss_dssp CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCCHH
T ss_pred CcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChH
Confidence 35799999999995 57777777899855 678876433211 1122 3456899999986 89999999954
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.054 Score=56.62 Aligned_cols=111 Identities=13% Similarity=0.099 Sum_probs=70.7
Q ss_pred cEEEEEeCChhhHHHHHHHhh---------CCCEEEEE-CCCCCCCCc-c----cc---CCceecC--CHHhhhcC--Cc
Q 007040 163 LVLGIVGRSASARALATRSLS---------FKMSVLYF-DVPEGKGKV-T----FP---SAARRMD--TLNDLLAA--SD 220 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lka---------fG~~V~~~-dr~~~~~~~-~----~~---~g~~~~~--sL~eLL~~--sD 220 (620)
.+|||||+|.||+.+++.+.. .+++|.++ |++...... . +. ....... ++++++.+ .|
T Consensus 3 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~~iD 82 (327)
T 3do5_A 3 IKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADYD 82 (327)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHSCCS
T ss_pred EEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhcCCCCC
Confidence 369999999999999999975 47776654 665422111 0 00 0111223 88999864 89
Q ss_pred EEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhh-cHHHHHHHHHcCCcc
Q 007040 221 VISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLL-DDCAVKQLLIDGTLA 274 (620)
Q Consensus 221 vVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vV-De~AL~~AL~~G~I~ 274 (620)
+|+.++|....+.. .-.-....|+.|.-+|...-+.+. ..+.|.++.++....
T Consensus 83 vVv~~tp~~~h~~~-a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~~ 136 (327)
T 3do5_A 83 VLIEASVTRVDGGE-GVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVR 136 (327)
T ss_dssp EEEECCCCC----C-HHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTCC
T ss_pred EEEECCCCcccchh-HHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCCc
Confidence 99999996633222 112346678889888887666654 566777777766553
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=94.64 E-value=0.0092 Score=56.32 Aligned_cols=36 Identities=8% Similarity=-0.042 Sum_probs=32.6
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 161 RGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
.|++|.|+| .|.||..+++.++..|++|++.+++..
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~ 74 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDA 74 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHH
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 588999999 699999999999999999999998653
|
| >3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.11 Score=54.68 Aligned_cols=96 Identities=10% Similarity=0.066 Sum_probs=68.6
Q ss_pred eecCcEEEEEeCC--hhhHHHHHHHhhCCCEEEEECCCCCC--CCccc---------c--CC--ceecCCHHhhhcCCcE
Q 007040 159 RCRGLVLGIVGRS--ASARALATRSLSFKMSVLYFDVPEGK--GKVTF---------P--SA--ARRMDTLNDLLAASDV 221 (620)
Q Consensus 159 ~L~GktVGIIGlG--~IG~~vA~~LkafG~~V~~~dr~~~~--~~~~~---------~--~g--~~~~~sL~eLL~~sDv 221 (620)
.+.|.+|+|||=| ++..+++..+..||++|.+..|..-. ..... . .| +....++++.++.+||
T Consensus 158 ~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDv 237 (328)
T 3grf_A 158 GFKGIKFAYCGDSMNNVTYDLMRGCALLGMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIKIFHDCKKGCEGVDV 237 (328)
T ss_dssp TGGGCCEEEESCCSSHHHHHHHHHHHHHTCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCEEEEESSHHHHHTTCSE
T ss_pred ccCCcEEEEeCCCCcchHHHHHHHHHHcCCEEEEECChHhhhCCCHHHHHHHHHHHhhccCCCeEEEEcCHHHHhcCCCE
Confidence 4789999999986 88899999999999999999986533 21100 0 12 3456799999999999
Q ss_pred EEEc----ccCCh----h-----hHhhcCHHHhhccCCCcEEEEcC
Q 007040 222 ISLH----CAVTD----E-----TIQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 222 Vil~----lPlT~----~-----T~~lI~~~~L~~MK~gAiLINvg 254 (620)
|..- +...+ + ..--++.+.++.+|++++|.-+.
T Consensus 238 vytd~W~sm~iq~er~~~~~~~~~~y~vt~~~l~~a~~~ai~mH~l 283 (328)
T 3grf_A 238 VYTDSWMSYHITKEQKEARLKVLTPFQVDDAVMAVTSKRSIFMNCL 283 (328)
T ss_dssp EEECCCC--------CCTHHHHHGGGCBCHHHHTTSCTTCEEEECS
T ss_pred EEecCccccCCcHHHHHHHHHHhcCCCCCHHHHHhcCCCCEEECCC
Confidence 9863 22111 1 11236888999999999888764
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.071 Score=58.28 Aligned_cols=64 Identities=25% Similarity=0.266 Sum_probs=49.0
Q ss_pred CcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccC
Q 007040 162 GLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAV 228 (620)
Q Consensus 162 GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPl 228 (620)
+++|.|.| .|.||+.+++.|...|++|++++++........ ....+.+.+++..+|+|+.+...
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~~v~---~d~~~~~~~~l~~~D~Vih~A~~ 211 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKRF---WDPLNPASDLLDGADVLVHLAGE 211 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTTCEE---CCTTSCCTTTTTTCSEEEECCCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCcccee---ecccchhHHhcCCCCEEEECCCC
Confidence 78999999 799999999999999999999999875432111 11123456778899999987664
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.036 Score=56.28 Aligned_cols=71 Identities=13% Similarity=0.066 Sum_probs=50.6
Q ss_pred eeecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCC---ccccCCc-------eecCCHHhhhc--CCcEEEE
Q 007040 158 RRCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGK---VTFPSAA-------RRMDTLNDLLA--ASDVISL 224 (620)
Q Consensus 158 ~~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~---~~~~~g~-------~~~~sL~eLL~--~sDvVil 224 (620)
..+.|++|.|.|. |.||+.+++.|...|++|+++++...... ... .++ ...+++.+++. ..|+|+.
T Consensus 16 ~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l-~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih 94 (330)
T 2pzm_A 16 PRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPV-AGLSVIEGSVTDAGLLERAFDSFKPTHVVH 94 (330)
T ss_dssp STTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSC-TTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhcc-CCceEEEeeCCCHHHHHHHHhhcCCCEEEE
Confidence 4578999999986 99999999999999999999998653321 000 111 11223556777 8899988
Q ss_pred cccCC
Q 007040 225 HCAVT 229 (620)
Q Consensus 225 ~lPlT 229 (620)
+....
T Consensus 95 ~A~~~ 99 (330)
T 2pzm_A 95 SAAAY 99 (330)
T ss_dssp CCCCC
T ss_pred CCccC
Confidence 77643
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.039 Score=55.82 Aligned_cols=39 Identities=18% Similarity=0.023 Sum_probs=35.2
Q ss_pred ceeecCcEEEEEeCC---hhhHHHHHHHhhCCCEEEEECCCC
Q 007040 157 MRRCRGLVLGIVGRS---ASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 157 ~~~L~GktVGIIGlG---~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
+..+.|+++.|.|.+ .||+++|+.|...|++|++.+++.
T Consensus 25 ~~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~ 66 (296)
T 3k31_A 25 GMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSE 66 (296)
T ss_dssp CCTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred hhccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCCh
Confidence 356899999999986 899999999999999999999875
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=94.59 E-value=0.015 Score=60.17 Aligned_cols=68 Identities=18% Similarity=0.193 Sum_probs=50.0
Q ss_pred CcEEEEEeCC-hhhHHHHHHHhhC--CCEE-EEECCCCCCCCccc-cCCc-eecCCHHhhhc--CCcEEEEcccCC
Q 007040 162 GLVLGIVGRS-ASARALATRSLSF--KMSV-LYFDVPEGKGKVTF-PSAA-RRMDTLNDLLA--ASDVISLHCAVT 229 (620)
Q Consensus 162 GktVGIIGlG-~IG~~vA~~Lkaf--G~~V-~~~dr~~~~~~~~~-~~g~-~~~~sL~eLL~--~sDvVil~lPlT 229 (620)
-.+|||||+| .+|+..+..++.. +++| .++|+++....... ..+. ..+.+++++++ +.|+|++++|..
T Consensus 18 ~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~ 93 (340)
T 1zh8_A 18 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVE 93 (340)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGG
T ss_pred ceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCch
Confidence 3579999999 8999999999876 5776 57788764332111 1133 45689999997 589999999954
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.54 E-value=0.043 Score=56.73 Aligned_cols=90 Identities=10% Similarity=0.054 Sum_probs=58.1
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCce---ec---CC-HHhh---h-----cCCcEEEEc
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR---RM---DT-LNDL---L-----AASDVISLH 225 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~---~~---~s-L~eL---L-----~~sDvVil~ 225 (620)
.|.+|.|+|.|.||..+++.++.+|++|++.+++....+.....|.. .. .+ .+++ . ...|+|+.+
T Consensus 168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vid~ 247 (352)
T 1e3j_A 168 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDC 247 (352)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEEEEC
Confidence 57899999999999999999999999999998775432211112211 11 11 1222 2 247888877
Q ss_pred ccCChhhHhhcCHHHhhccCCCcEEEEcCC
Q 007040 226 CAVTDETIQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 226 lPlT~~T~~lI~~~~L~~MK~gAiLINvgR 255 (620)
+..... -...+..++++..+|.+|-
T Consensus 248 ~g~~~~-----~~~~~~~l~~~G~iv~~G~ 272 (352)
T 1e3j_A 248 SGNEKC-----ITIGINITRTGGTLMLVGM 272 (352)
T ss_dssp SCCHHH-----HHHHHHHSCTTCEEEECSC
T ss_pred CCCHHH-----HHHHHHHHhcCCEEEEEec
Confidence 763211 1335677788888887764
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.013 Score=62.08 Aligned_cols=69 Identities=12% Similarity=0.126 Sum_probs=50.7
Q ss_pred CcEEEEEeCCh---hhHHHHHHHhhCC-CEEE--EECCCCCCCCcc-ccCCc---eecCCHHhhhcC-------CcEEEE
Q 007040 162 GLVLGIVGRSA---SARALATRSLSFK-MSVL--YFDVPEGKGKVT-FPSAA---RRMDTLNDLLAA-------SDVISL 224 (620)
Q Consensus 162 GktVGIIGlG~---IG~~vA~~LkafG-~~V~--~~dr~~~~~~~~-~~~g~---~~~~sL~eLL~~-------sDvVil 224 (620)
-.+|||||+|. ||+..+..++..+ ++|. ++|+++...... ...++ ..+.+++++++. .|+|++
T Consensus 12 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~i 91 (398)
T 3dty_A 12 PIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAVSI 91 (398)
T ss_dssp CEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEEEE
T ss_pred cceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEEEE
Confidence 35799999999 9999998887665 6776 468876433311 11233 456799999975 899999
Q ss_pred cccCCh
Q 007040 225 HCAVTD 230 (620)
Q Consensus 225 ~lPlT~ 230 (620)
++|...
T Consensus 92 ~tp~~~ 97 (398)
T 3dty_A 92 ATPNGT 97 (398)
T ss_dssp ESCGGG
T ss_pred CCCcHH
Confidence 999653
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.52 E-value=0.039 Score=57.69 Aligned_cols=89 Identities=13% Similarity=0.119 Sum_probs=58.1
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCccccCCceec-------CCHHhhhc-----CCcEEEEccc
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARRM-------DTLNDLLA-----ASDVISLHCA 227 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~~~g~~~~-------~sL~eLL~-----~sDvVil~lP 227 (620)
.|.+|.|+|.|.||...++.++.+|+ +|++.+++....+.....|.... .++.+.+. ..|+|+-++.
T Consensus 193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g 272 (378)
T 3uko_A 193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIG 272 (378)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECCC
Confidence 58899999999999999999999999 89999987755442223332211 12222221 3677777766
Q ss_pred CChhhHhhcCHHHhhccCCC-cEEEEcC
Q 007040 228 VTDETIQIINAECLQHIKPG-AFLVNTG 254 (620)
Q Consensus 228 lT~~T~~lI~~~~L~~MK~g-AiLINvg 254 (620)
..+. -...+..++++ ..+|.+|
T Consensus 273 ~~~~-----~~~~~~~l~~g~G~iv~~G 295 (378)
T 3uko_A 273 NVSV-----MRAALECCHKGWGTSVIVG 295 (378)
T ss_dssp CHHH-----HHHHHHTBCTTTCEEEECS
T ss_pred CHHH-----HHHHHHHhhccCCEEEEEc
Confidence 3211 12356667775 7777765
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=94.49 E-value=0.028 Score=58.40 Aligned_cols=90 Identities=12% Similarity=0.102 Sum_probs=58.3
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCccccCCce---ecC-----CH-Hhhh----cCCcEEEEcc
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAAR---RMD-----TL-NDLL----AASDVISLHC 226 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~~~g~~---~~~-----sL-~eLL----~~sDvVil~l 226 (620)
.|.+|.|+|.|.||...++.++.+|+ +|++.+++....+.....|.. ... ++ +++. ...|+|+.++
T Consensus 171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid~~ 250 (356)
T 1pl8_A 171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT 250 (356)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEECC
Confidence 57899999999999999999999999 999999876432211122221 111 11 1111 2478888777
Q ss_pred cCChhhHhhcCHHHhhccCCCcEEEEcCC
Q 007040 227 AVTDETIQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 227 PlT~~T~~lI~~~~L~~MK~gAiLINvgR 255 (620)
..... + ...+..++++..+|.+|-
T Consensus 251 g~~~~----~-~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 251 GAEAS----I-QAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp CCHHH----H-HHHHHHSCTTCEEEECSC
T ss_pred CChHH----H-HHHHHHhcCCCEEEEEec
Confidence 63211 1 345677788888887764
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=94.49 E-value=0.027 Score=60.37 Aligned_cols=65 Identities=18% Similarity=0.201 Sum_probs=47.5
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCc-----eecCCHHhhhcCCcEEE
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA-----RRMDTLNDLLAASDVIS 223 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~-----~~~~sL~eLL~~sDvVi 223 (620)
-+.|++|+|||-|.+|+.+++.++.+|++|+++|+++........+.. ...+.+.+++..+|+|+
T Consensus 32 ~~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D~V~ 101 (419)
T 4e4t_A 32 ILPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVS 101 (419)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCSEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCCEEE
Confidence 358999999999999999999999999999999987643221111111 11223556677899998
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=94.46 E-value=0.049 Score=54.72 Aligned_cols=34 Identities=21% Similarity=0.222 Sum_probs=30.7
Q ss_pred CcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 162 GLVLGIVG-RSASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 162 GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
.++|.|+| .|.||+.+++.|...|++|++.+|+.
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 38 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPL 38 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCC
T ss_pred ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCc
Confidence 46799999 59999999999999999999999875
|
| >3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.13 Score=54.63 Aligned_cols=97 Identities=14% Similarity=0.072 Sum_probs=65.3
Q ss_pred eeecCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCCCCCCccc-------------cCCceecCCHHhhhcCCcEEE
Q 007040 158 RRCRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPEGKGKVTF-------------PSAARRMDTLNDLLAASDVIS 223 (620)
Q Consensus 158 ~~L~GktVGIIGlG-~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~-------------~~g~~~~~sL~eLL~~sDvVi 223 (620)
..|.|.+|+|||=+ ++..+++..+..||++|.+..|..-.....+ ...+....+++++++.+|||.
T Consensus 184 ~~l~glkva~vGD~~nva~Sl~~~l~~lG~~v~~~~P~~~~~~~~i~~~~~~~a~~~~~g~~~~~~~d~~eav~~aDVvy 263 (353)
T 3sds_A 184 LGLEGLKIAWVGDANNVLFDLAIAATKMGVNVAVATPRGYEIPSHIVELIQKAREGVQSPGNLTQTTVPEVAVKDADVIV 263 (353)
T ss_dssp CSCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHTTCSSCCCEEEESCHHHHTTTCSEEE
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHhhhhccCCCeEEEECCHHHHhcCCCEEE
Confidence 34799999999976 5777888888899999999998653222110 113445679999999999998
Q ss_pred Ecc--cCChh--h--------HhhcCHHHhhc--cCCCcEEEEcC
Q 007040 224 LHC--AVTDE--T--------IQIINAECLQH--IKPGAFLVNTG 254 (620)
Q Consensus 224 l~l--PlT~~--T--------~~lI~~~~L~~--MK~gAiLINvg 254 (620)
.-. +...+ . ..-|+.+.++. +|++++|.-+.
T Consensus 264 td~w~smg~E~~~~~r~~~~~~y~vt~ell~~~~ak~~ai~MHcL 308 (353)
T 3sds_A 264 TDTWISMGQETEKIKRLEAFKDFKVTSELAKRGGAKENWKFMHCL 308 (353)
T ss_dssp ECCC--------CHHHHHHTTTCCBCHHHHHHHTCCTTCEEEECS
T ss_pred eCCccCCchhhHHHHHHHHhhCceecHHHHhhcccCCCcEEECCC
Confidence 743 22211 0 12357777777 77777777653
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=94.43 E-value=0.021 Score=58.78 Aligned_cols=87 Identities=13% Similarity=0.108 Sum_probs=59.6
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCce-------ecCCHHhh-hcCCcEEEEcccCChhhH
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR-------RMDTLNDL-LAASDVISLHCAVTDETI 233 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~-------~~~sL~eL-L~~sDvVil~lPlT~~T~ 233 (620)
.+++.|+|+|.+|+.+|+.|...|. |++.|+++.... ....+.. ..+.|.++ +.+||.|+++++.. ..
T Consensus 115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d--~~ 190 (336)
T 1lnq_A 115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK-VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESD--SE 190 (336)
T ss_dssp -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSSH--HH
T ss_pred cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCcc--HH
Confidence 5679999999999999999999999 999998875432 1112221 11234444 77899999998854 33
Q ss_pred hhcCHHHhhccCCCcEEEE
Q 007040 234 QIINAECLQHIKPGAFLVN 252 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLIN 252 (620)
+++-...+..+.+...+|-
T Consensus 191 n~~~~~~ar~~~~~~~iia 209 (336)
T 1lnq_A 191 TIHCILGIRKIDESVRIIA 209 (336)
T ss_dssp HHHHHHHHHTTCTTSEEEE
T ss_pred HHHHHHHHHHHCCCCeEEE
Confidence 4444556677777744443
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=94.39 E-value=0.057 Score=55.81 Aligned_cols=110 Identities=13% Similarity=-0.036 Sum_probs=65.7
Q ss_pred CcEEEEEeCChhhHH-HHHHHhhCCCEEEEECCCCCCCC--ccccCCceec--CCHHhhh-cCCcEEEEc--ccC-Chhh
Q 007040 162 GLVLGIVGRSASARA-LATRSLSFKMSVLYFDVPEGKGK--VTFPSAARRM--DTLNDLL-AASDVISLH--CAV-TDET 232 (620)
Q Consensus 162 GktVGIIGlG~IG~~-vA~~LkafG~~V~~~dr~~~~~~--~~~~~g~~~~--~sL~eLL-~~sDvVil~--lPl-T~~T 232 (620)
.++|.|||.|.+|.+ +|+.|+..|++|.++|....... .....|+... .+.+++. ..+|+|+.. +|. .|+.
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi~~~~p~~ 83 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVAKRGMDVV 83 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTCCTTCHHH
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCcCCCCHHH
Confidence 468999999999996 99999999999999998753211 1111233221 2344554 478998885 332 2321
Q ss_pred H-----h--hcCH-HHhhc--cCCCc-EEEEcCCChhhcHHHHHHHHHcC
Q 007040 233 I-----Q--IINA-ECLQH--IKPGA-FLVNTGSSQLLDDCAVKQLLIDG 271 (620)
Q Consensus 233 ~-----~--lI~~-~~L~~--MK~gA-iLINvgRG~vVDe~AL~~AL~~G 271 (620)
. + ++.. +.|.. ++... +-|--+-|+.--..-+...|+..
T Consensus 84 ~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~ 133 (326)
T 3eag_A 84 EAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYA 133 (326)
T ss_dssp HHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence 1 1 2332 33343 33222 33333457777776677777653
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.38 E-value=0.074 Score=53.15 Aligned_cols=37 Identities=14% Similarity=-0.020 Sum_probs=33.6
Q ss_pred eecCcEEEEEeC---ChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 159 RCRGLVLGIVGR---SASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 159 ~L~GktVGIIGl---G~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
.+.|+++.|.|. |.||+++|+.|...|++|++.+++.
T Consensus 18 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~ 57 (285)
T 2p91_A 18 LLEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATP 57 (285)
T ss_dssp TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCH
Confidence 378999999997 6999999999999999999999875
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=94.37 E-value=0.063 Score=52.24 Aligned_cols=97 Identities=15% Similarity=0.115 Sum_probs=58.6
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCC----cEEEEcccCCh-h--hH-
Q 007040 163 LVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAAS----DVISLHCAVTD-E--TI- 233 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~s----DvVil~lPlT~-~--T~- 233 (620)
+++.|.| .|.||+++|+.|...|++|++.+++...............+++++++... |+|+.+.-... . -.
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~id~lv~~Ag~~~~~~~~~~ 81 (257)
T 1fjh_A 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIADLSTAEGRKQAIADVLAKCSKGMDGLVLCAGLGPQTKVLGN 81 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHTTCTTCCSEEEECCCCCTTCSSHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhccccccCCCCHHHHHHHHHHhCCCCCEEEECCCCCCCcccHHH
Confidence 3566665 57999999999999999999999876443211111112223455666544 99998875443 0 00
Q ss_pred -------h--hcCHHHhhccCC--CcEEEEcCCChhh
Q 007040 234 -------Q--IINAECLQHIKP--GAFLVNTGSSQLL 259 (620)
Q Consensus 234 -------~--lI~~~~L~~MK~--gAiLINvgRG~vV 259 (620)
+ .+....+..|++ ...|||++.....
T Consensus 82 ~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~ 118 (257)
T 1fjh_A 82 VVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASA 118 (257)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGG
T ss_pred HHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhh
Confidence 1 112334555533 3788888876543
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=94.37 E-value=0.091 Score=51.67 Aligned_cols=37 Identities=14% Similarity=0.121 Sum_probs=33.0
Q ss_pred eecCcEEEEEeC-Ch--hhHHHHHHHhhCCCEEEEECCCC
Q 007040 159 RCRGLVLGIVGR-SA--SARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 159 ~L~GktVGIIGl-G~--IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
++.|+++.|.|. |. ||+++|+.|...|++|++.+++.
T Consensus 4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~ 43 (266)
T 3oig_A 4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGE 43 (266)
T ss_dssp CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCch
Confidence 478999999997 44 99999999999999999998864
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=94.37 E-value=0.034 Score=62.69 Aligned_cols=93 Identities=11% Similarity=0.107 Sum_probs=63.8
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC-------------------------ccccCCc--ee-
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK-------------------------VTFPSAA--RR- 208 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~-------------------------~~~~~g~--~~- 208 (620)
..|.+.+|.|||+|.+|..+|+.|...|. ++..+|...-... ......+ ..
T Consensus 323 ~kL~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~~iNP~v~v~~~ 402 (598)
T 3vh1_A 323 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGV 402 (598)
T ss_dssp HHHHTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccchhhcCcHHHHHHHHHHHhHCCCcEEEEE
Confidence 56899999999999999999999999998 8999976421000 0000011 00
Q ss_pred --------------------cCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcC
Q 007040 209 --------------------MDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 209 --------------------~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvg 254 (620)
.+.+++++.++|+|+.++. +.+++.+++...... +..+|+.+
T Consensus 403 ~~~I~~pgh~i~~~~~~~l~~~~l~~li~~~DvVvdatD-n~~tR~lin~~c~~~---~~plI~aa 464 (598)
T 3vh1_A 403 KLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD-SRESRWLPSLLSNIE---NKTVINAA 464 (598)
T ss_dssp CCCCCCSSCCCCSHHHHHHHHHHHHHHHHHCSEEEECCS-BGGGTHHHHHHHHHT---TCEEEEEE
T ss_pred eccccccCcccccccccccCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHhc---CCCEEEEE
Confidence 1234678889999999875 557788888766553 34666654
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.35 E-value=0.06 Score=56.48 Aligned_cols=66 Identities=12% Similarity=0.141 Sum_probs=42.6
Q ss_pred EEEEEeCChhhHHHHHHHhhC-CCEEEEE-CCCCCCCCcc-ccCC-----------------ceecCCHHhhhcCCcEEE
Q 007040 164 VLGIVGRSASARALATRSLSF-KMSVLYF-DVPEGKGKVT-FPSA-----------------ARRMDTLNDLLAASDVIS 223 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~Lkaf-G~~V~~~-dr~~~~~~~~-~~~g-----------------~~~~~sL~eLL~~sDvVi 223 (620)
+|||+|+|.||+.+++.|... +++|.+. |+........ ...+ +....++++++..+|+|+
T Consensus 3 kVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV~ 82 (340)
T 1b7g_O 3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV 82 (340)
T ss_dssp EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred EEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCEEE
Confidence 699999999999999999865 5777655 4442211000 0001 111224556667899999
Q ss_pred EcccCC
Q 007040 224 LHCAVT 229 (620)
Q Consensus 224 l~lPlT 229 (620)
.|+|..
T Consensus 83 ~aTp~~ 88 (340)
T 1b7g_O 83 DTTPNG 88 (340)
T ss_dssp ECCSTT
T ss_pred ECCCCc
Confidence 999965
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.33 E-value=0.025 Score=59.01 Aligned_cols=68 Identities=18% Similarity=0.117 Sum_probs=46.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEEEEE-CCCCCCCCccc-cCC------------------ceecCCHHhhhcCCcE
Q 007040 163 LVLGIVGRSASARALATRSLSF-KMSVLYF-DVPEGKGKVTF-PSA------------------ARRMDTLNDLLAASDV 221 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-G~~V~~~-dr~~~~~~~~~-~~g------------------~~~~~sL~eLL~~sDv 221 (620)
.+|||+|+|.||+.+++.+... +++|.++ |+......... ..| .....++++++..+|+
T Consensus 3 irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDv 82 (334)
T 2czc_A 3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDI 82 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSE
T ss_pred cEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCCE
Confidence 3799999999999999999865 5676654 55432111000 001 1223578888889999
Q ss_pred EEEcccCCh
Q 007040 222 ISLHCAVTD 230 (620)
Q Consensus 222 Vil~lPlT~ 230 (620)
|+.|+|..-
T Consensus 83 V~~aTp~~~ 91 (334)
T 2czc_A 83 IVDATPGGI 91 (334)
T ss_dssp EEECCSTTH
T ss_pred EEECCCccc
Confidence 999999653
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=94.29 E-value=0.064 Score=53.93 Aligned_cols=65 Identities=18% Similarity=0.183 Sum_probs=45.3
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcc----ccCCce-------ecCCHHhhhcCCcEEEEccc
Q 007040 163 LVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVT----FPSAAR-------RMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~----~~~g~~-------~~~sL~eLL~~sDvVil~lP 227 (620)
++|.|+| .|.||+.+++.|...|++|++.+|+....... ...++. ..+++.+++..+|+|+.+.+
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~ 88 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALA 88 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence 4799999 59999999999999999999999876411100 011111 12345667778888887765
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=94.23 E-value=0.18 Score=51.55 Aligned_cols=38 Identities=3% Similarity=-0.018 Sum_probs=35.5
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
.++.|++|.|||.|.+|...++.|...|++|+++++..
T Consensus 9 ~~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~ 46 (274)
T 1kyq_A 9 HQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL 46 (274)
T ss_dssp ECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred EEcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 46899999999999999999999999999999999765
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.23 E-value=0.12 Score=51.18 Aligned_cols=38 Identities=21% Similarity=0.320 Sum_probs=34.0
Q ss_pred ceeecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCC
Q 007040 157 MRRCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVP 194 (620)
Q Consensus 157 ~~~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~ 194 (620)
|..+.|+++.|.|. |.||+++|+.|...|++|++++++
T Consensus 5 m~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~ 43 (287)
T 3pxx_A 5 MGRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDIC 43 (287)
T ss_dssp CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred ccccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEccc
Confidence 45689999999975 689999999999999999999886
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=94.20 E-value=0.02 Score=59.67 Aligned_cols=36 Identities=11% Similarity=-0.044 Sum_probs=33.2
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
.|.+|.|+|.|.||...++.++.+|++|++.+++..
T Consensus 189 ~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~ 224 (363)
T 3uog_A 189 AGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSRE 224 (363)
T ss_dssp TTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCch
Confidence 588999999999999999999999999999998753
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.19 E-value=0.077 Score=54.26 Aligned_cols=35 Identities=20% Similarity=0.027 Sum_probs=29.3
Q ss_pred CcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 162 GLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 162 GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
+++|.|.| .|.||+.+++.|...|++|+++++...
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 36 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRAS 36 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCc
Confidence 36789998 599999999999999999999998753
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=94.19 E-value=0.04 Score=54.39 Aligned_cols=37 Identities=16% Similarity=0.026 Sum_probs=33.6
Q ss_pred eecCcEEEEEeC---ChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 159 RCRGLVLGIVGR---SASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 159 ~L~GktVGIIGl---G~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
.+.|+++.|.|. |.||+++|+.|...|++|++.+++.
T Consensus 5 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~ 44 (261)
T 2wyu_A 5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE 44 (261)
T ss_dssp CCTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCG
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCH
Confidence 468999999997 6999999999999999999999875
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=94.17 E-value=0.079 Score=53.43 Aligned_cols=39 Identities=18% Similarity=0.131 Sum_probs=34.4
Q ss_pred eeecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 158 RRCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 158 ~~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
.++.|+++.|.|. |.||+++|+.|...|++|++.+++..
T Consensus 43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~ 82 (291)
T 3ijr_A 43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEE 82 (291)
T ss_dssp STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 4678999999975 78999999999999999999988753
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=94.17 E-value=0.061 Score=53.83 Aligned_cols=68 Identities=13% Similarity=0.084 Sum_probs=45.3
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcc----ccCCceecCCHHhhhcC--CcEEEEcccCC
Q 007040 161 RGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVT----FPSAARRMDTLNDLLAA--SDVISLHCAVT 229 (620)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~----~~~g~~~~~sL~eLL~~--sDvVil~lPlT 229 (620)
.-++|.|.| .|.||+.+++.|...|++|+++++.... ... ..........+.+++.. .|+|+.+....
T Consensus 11 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~l~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~ 85 (321)
T 2pk3_A 11 GSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEA-KLPNVEMISLDIMDSQRVKKVISDIKPDYIFHLAAKS 85 (321)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTC-CCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCSCC
T ss_pred CcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcc-ccceeeEEECCCCCHHHHHHHHHhcCCCEEEEcCccc
Confidence 345677775 6999999999999999999999987643 110 00001112345566665 79999887654
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=94.14 E-value=0.035 Score=55.05 Aligned_cols=37 Identities=14% Similarity=0.047 Sum_probs=33.8
Q ss_pred eecCcEEEEEe---CChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 159 RCRGLVLGIVG---RSASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 159 ~L~GktVGIIG---lG~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
.+.|+++.|.| .|.||+++|+.|...|++|++.+++.
T Consensus 4 ~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~ 43 (269)
T 2h7i_A 4 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR 43 (269)
T ss_dssp TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSC
T ss_pred ccCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCh
Confidence 46899999999 59999999999999999999999875
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.12 E-value=0.027 Score=58.07 Aligned_cols=66 Identities=11% Similarity=0.121 Sum_probs=47.3
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEE-EECCCCC-CCCcc------ccCCceecCCHHhhhcC--CcEEEEcccCC
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVL-YFDVPEG-KGKVT------FPSAARRMDTLNDLLAA--SDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~-~~dr~~~-~~~~~------~~~g~~~~~sL~eLL~~--sDvVil~lPlT 229 (620)
.+|||||+|.||...++.+ .-+++|. ++|++.. ..... +..+...+.++++++++ .|+|++++|..
T Consensus 3 ~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~ 78 (337)
T 3ip3_A 3 LKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVFS 78 (337)
T ss_dssp EEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSSHH
T ss_pred eEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCCcc
Confidence 4799999999999777777 6678876 5787762 22211 11123567899999975 89999999854
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=94.11 E-value=0.063 Score=51.33 Aligned_cols=69 Identities=9% Similarity=0.050 Sum_probs=49.2
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhC--CCEEEEECCCCCCCCc------cccCCceecCCHHhhhcCCcEEEEcccCC
Q 007040 161 RGLVLGIVG-RSASARALATRSLSF--KMSVLYFDVPEGKGKV------TFPSAARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~Lkaf--G~~V~~~dr~~~~~~~------~~~~g~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
.+++|.|.| .|.||+.+++.|... |++|++.+|+...... .........+++.+++...|+|+.+....
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~~ 80 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSAV 80 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCCC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcCCCeeEEEecCCCHHHHHHHHcCCCEEEEecccc
Confidence 578899998 699999999999988 8999999987532110 01111112235677888999999887643
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=94.11 E-value=0.02 Score=60.69 Aligned_cols=68 Identities=15% Similarity=0.172 Sum_probs=48.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhC---------CCEEE-EECCCCCCCCcc-ccCCc-eecCCHHhhhc--CCcEEEEcccC
Q 007040 163 LVLGIVGRSASARALATRSLSF---------KMSVL-YFDVPEGKGKVT-FPSAA-RRMDTLNDLLA--ASDVISLHCAV 228 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf---------G~~V~-~~dr~~~~~~~~-~~~g~-~~~~sL~eLL~--~sDvVil~lPl 228 (620)
.+|||||+|.||+..++.++.. +++|. ++|+++...... ...++ ..+.+++++|+ +.|+|++++|.
T Consensus 27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~I~tp~ 106 (412)
T 4gqa_A 27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVDITSPN 106 (412)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCG
T ss_pred ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEEECCCc
Confidence 4799999999999988888753 45655 568876433211 11223 35679999996 47999999996
Q ss_pred Ch
Q 007040 229 TD 230 (620)
Q Consensus 229 T~ 230 (620)
.-
T Consensus 107 ~~ 108 (412)
T 4gqa_A 107 HL 108 (412)
T ss_dssp GG
T ss_pred HH
Confidence 53
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=94.11 E-value=0.054 Score=53.18 Aligned_cols=99 Identities=14% Similarity=0.128 Sum_probs=60.1
Q ss_pred eecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-ccCCceecCCHHhhhc-------CCcEEEEcccCC
Q 007040 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVT-FPSAARRMDTLNDLLA-------ASDVISLHCAVT 229 (620)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~-~~~g~~~~~sL~eLL~-------~sDvVil~lPlT 229 (620)
+-.|+++.|.|. |.||+++|+.|...|++|++.+++....... ....+...+++++++. ..|+|+.+.-..
T Consensus 19 ~~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~d~~d~~~v~~~~~~~~~~~g~iD~li~~Ag~~ 98 (251)
T 3orf_A 19 SHMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADHSFTIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGW 98 (251)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTSSEEEECSCSSHHHHHHHHHHHHTTTCCEEEEEECCCCC
T ss_pred cccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccccccceEEEeCCHHHHHHHHHHHHHHcCCCCEEEECCccC
Confidence 345889999985 6899999999999999999999987543311 1011111223444443 349998876421
Q ss_pred -------hhhH----hh----------cCHHHhhccCCCcEEEEcCCCh
Q 007040 230 -------DETI----QI----------INAECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 230 -------~~T~----~l----------I~~~~L~~MK~gAiLINvgRG~ 257 (620)
..+. .+ +....+..|+++..|||++...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~ 147 (251)
T 3orf_A 99 SGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASA 147 (251)
T ss_dssp CCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred CCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechh
Confidence 1110 11 1234556677777888887654
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=94.10 E-value=0.035 Score=57.19 Aligned_cols=90 Identities=14% Similarity=0.060 Sum_probs=56.6
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCccccC--Cceec--CCHHhhhc-----CCcEEEEcccCCh
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPS--AARRM--DTLNDLLA-----ASDVISLHCAVTD 230 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~~~--g~~~~--~sL~eLL~-----~sDvVil~lPlT~ 230 (620)
.|.+|.|+|.|.||..+++.++.+|+ +|++.+++....+..... .+... .++.+.+. ..|+|+.++...+
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~la~~v~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~ 243 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPYADRLVNPLEEDLLEVVRRVTGSGVEVLLEFSGNEA 243 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTTCSEEECTTTSCHHHHHHHHHSSCEEEEEECSCCHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhHHhccCcCccCHHHHHHHhcCCCCCEEEECCCCHH
Confidence 68899999999999999999999999 999999875332211111 01111 12222222 4677777766322
Q ss_pred hhHhhcCHHHhhccCCCcEEEEcCC
Q 007040 231 ETIQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 231 ~T~~lI~~~~L~~MK~gAiLINvgR 255 (620)
.. ...+..|+++..+|.+|.
T Consensus 244 ~~-----~~~~~~l~~~G~iv~~g~ 263 (343)
T 2dq4_A 244 AI-----HQGLMALIPGGEARILGI 263 (343)
T ss_dssp HH-----HHHHHHEEEEEEEEECCC
T ss_pred HH-----HHHHHHHhcCCEEEEEec
Confidence 11 334566777777777653
|
| >4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A | Back alignment and structure |
|---|
Probab=94.09 E-value=0.41 Score=49.74 Aligned_cols=66 Identities=17% Similarity=0.220 Sum_probs=50.8
Q ss_pred ecCcEEEEEeC---ChhhHHHHHHHhhC-CCEEEEECCCCCCCCcc-----ccCC--ceecCCHHhhhcCCcEEEEc
Q 007040 160 CRGLVLGIVGR---SASARALATRSLSF-KMSVLYFDVPEGKGKVT-----FPSA--ARRMDTLNDLLAASDVISLH 225 (620)
Q Consensus 160 L~GktVGIIGl---G~IG~~vA~~Lkaf-G~~V~~~dr~~~~~~~~-----~~~g--~~~~~sL~eLL~~sDvVil~ 225 (620)
+.|.+|++||= |++..+++..+..| |++|.+..|..-..... ...| +....+++++++.+|||...
T Consensus 149 l~glkva~vGD~~~~rva~Sl~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~ 225 (306)
T 4ekn_B 149 IDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKAKNIKFYEKESLDDLDDDIDVLYVT 225 (306)
T ss_dssp STTCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCGGGCCTTCSEEEEC
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHhcCCCEEEEECCcccccCHHHHHHHHHcCCEEEEEcCHHHHhcCCCEEEeC
Confidence 68999999998 48999999999999 99999999864322111 1112 23467999999999999974
|
| >4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.18 Score=53.10 Aligned_cols=95 Identities=12% Similarity=0.078 Sum_probs=64.6
Q ss_pred eecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccc---------cCC--ceecCCHHhhhcCCcEEEEcc
Q 007040 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTF---------PSA--ARRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~---------~~g--~~~~~sL~eLL~~sDvVil~l 226 (620)
.+.|.+|+|||= +++..+++..+..||++|.+..|..-.....+ ..| +....+++ .++.+|||..-+
T Consensus 172 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~-av~~aDvvytd~ 250 (339)
T 4a8t_A 172 KLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDV 250 (339)
T ss_dssp CGGGCEEEEESSCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHCCEEEEECCGG-GGTTCSEEEECC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEECChh-HHcCCCEEEecC
Confidence 378999999986 67888999999999999999998653322111 112 34567899 999999999733
Q ss_pred --cCC------hh----hH--hhcCHHHhhccCCCcEEEEcC
Q 007040 227 --AVT------DE----TI--QIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 227 --PlT------~~----T~--~lI~~~~L~~MK~gAiLINvg 254 (620)
... .+ .. --|+.+.++.+||+++|.-+.
T Consensus 251 w~smg~~~~~~~er~~~~~~~y~vt~ell~~ak~dai~mHcL 292 (339)
T 4a8t_A 251 WYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCL 292 (339)
T ss_dssp SSCCTTSCCCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECS
T ss_pred cccCCchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCC
Confidence 110 11 01 235667777777777776653
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=94.05 E-value=0.083 Score=57.38 Aligned_cols=96 Identities=8% Similarity=0.077 Sum_probs=67.5
Q ss_pred eecCcEEEEEeCC----------hhhHHHHHHHhhCCCEEEEECCCCCCCC--ccc-------c----CCceecCCHHhh
Q 007040 159 RCRGLVLGIVGRS----------ASARALATRSLSFKMSVLYFDVPEGKGK--VTF-------P----SAARRMDTLNDL 215 (620)
Q Consensus 159 ~L~GktVGIIGlG----------~IG~~vA~~LkafG~~V~~~dr~~~~~~--~~~-------~----~g~~~~~sL~eL 215 (620)
.+.|++|+|+|+. .-...|++.|...|++|.+|||...... ..+ + .++....++.+.
T Consensus 326 ~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (467)
T 2q3e_A 326 TVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEA 405 (467)
T ss_dssp CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHCC------CHHHHHEEECSSHHHH
T ss_pred ccCCCEEEEEeeccCCCCcchhhChHHHHHHHHHHCCCEEEEEcCccCHHHHhhhhccccccccccccCceeecCCHHHH
Confidence 3789999999986 3688999999999999999999853221 000 0 023344578889
Q ss_pred hcCCcEEEEcccCChhhHhhcCHHHh-hccCCCcEEEEcCCCh
Q 007040 216 LAASDVISLHCAVTDETIQIINAECL-QHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 216 L~~sDvVil~lPlT~~T~~lI~~~~L-~~MK~gAiLINvgRG~ 257 (620)
+..+|+|++++... +-+ -++-+.+ ..|+...+++++ |+-
T Consensus 406 ~~~ad~~vi~t~~~-~f~-~~~~~~~~~~~~~~~~i~D~-r~~ 445 (467)
T 2q3e_A 406 CDGAHAVVICTEWD-MFK-ELDYERIHKKMLKPAFIFDG-RRV 445 (467)
T ss_dssp HTTCSEEEECSCCG-GGG-GSCHHHHHHHSCSSCEEEES-SCT
T ss_pred HhCCcEEEEecCCh-hhh-cCCHHHHHHhcCCCCEEEeC-CCc
Confidence 99999999999875 333 2354444 567766668875 553
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=94.04 E-value=0.066 Score=55.28 Aligned_cols=98 Identities=17% Similarity=0.166 Sum_probs=59.9
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC----------ccccC--CceecCCHHhhhcCCcEEEEccc-
Q 007040 163 LVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK----------VTFPS--AARRMDTLNDLLAASDVISLHCA- 227 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~--~V~~~dr~~~~~~----------~~~~~--g~~~~~sL~eLL~~sDvVil~lP- 227 (620)
++|+|||.|.||+.+|-.|...+. ++..||....... ..... .+....+. +.++.||+|++..-
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~-~~~~~aDvVvitAG~ 79 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY-SLLKGSEIIVVTAGL 79 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCG-GGGTTCSEEEECCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCH-HHhCCCCEEEEecCC
Confidence 579999999999999998876554 8999998752111 00111 11122233 56889999999873
Q ss_pred -CCh-hhHh-hc--CH-------HHhhccCCCcEEEEcCCChhhcHHH
Q 007040 228 -VTD-ETIQ-II--NA-------ECLQHIKPGAFLVNTGSSQLLDDCA 263 (620)
Q Consensus 228 -lT~-~T~~-lI--~~-------~~L~~MK~gAiLINvgRG~vVDe~A 263 (620)
-.| .|+. ++ |. +.+..-.|+++++.++-. +|.-.
T Consensus 80 prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsNP--vd~~t 125 (294)
T 2x0j_A 80 ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNP--MDVMT 125 (294)
T ss_dssp CCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSS--HHHHH
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecCc--chhhH
Confidence 332 1222 22 22 234445678888888653 44433
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=94.02 E-value=0.13 Score=53.44 Aligned_cols=100 Identities=15% Similarity=0.224 Sum_probs=62.3
Q ss_pred cEEEEEe-CChhhHHHHHHHhh---CCCEEEEECCCCC-CCC----ccccCCceec----CCHHhhhcCCcEEEEcccCC
Q 007040 163 LVLGIVG-RSASARALATRSLS---FKMSVLYFDVPEG-KGK----VTFPSAARRM----DTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~Lka---fG~~V~~~dr~~~-~~~----~~~~~g~~~~----~sL~eLL~~sDvVil~lPlT 229 (620)
++|+||| .|.+|..+|..|.. +..++..+|.... ... ...+...... .+..+.+.+||+|+++.+..
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ag~~ 80 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVA 80 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEECCSCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEeCCCC
Confidence 4799999 99999999999864 5569999998751 111 0111111111 25667889999999987542
Q ss_pred h---h--------hHhhcC--HHHhhccCCCcEEEEcCCChhhcHHHH
Q 007040 230 D---E--------TIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCAV 264 (620)
Q Consensus 230 ~---~--------T~~lI~--~~~L~~MK~gAiLINvgRG~vVDe~AL 264 (620)
. . +..++- .+.+....|++++++++- .+|.-..
T Consensus 81 rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtN--Pvd~~t~ 126 (312)
T 3hhp_A 81 RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN--PVNTTVA 126 (312)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSS--CHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecC--cchhHHH
Confidence 1 1 222221 123344568999999964 4554443
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.01 E-value=0.063 Score=51.93 Aligned_cols=37 Identities=16% Similarity=0.106 Sum_probs=32.3
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCC
Q 007040 161 RGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGK 197 (620)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~ 197 (620)
.|+++.|.| .|.||+++|+.|...|++|++.+++...
T Consensus 2 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~ 39 (236)
T 1ooe_A 2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAND 39 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccc
Confidence 477888887 5899999999999999999999988654
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=93.98 E-value=0.024 Score=60.30 Aligned_cols=67 Identities=7% Similarity=0.068 Sum_probs=49.2
Q ss_pred CcEEEEEeCChhhHHHHHHHhhC--CCEEE-EECCCCCCCCc-cccCCceecCCHHhhhcCCcEEEEcccCC
Q 007040 162 GLVLGIVGRSASARALATRSLSF--KMSVL-YFDVPEGKGKV-TFPSAARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lkaf--G~~V~-~~dr~~~~~~~-~~~~g~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
-.+|||||+| +|+.-++.++.. ++++. ++|++...... +...++..+.++++++.+.|+|++++|..
T Consensus 7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~~~D~v~i~~p~~ 77 (372)
T 4gmf_A 7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITGMPDIACIVVRST 77 (372)
T ss_dssp CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGCCSCCSEEEECCC--
T ss_pred CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHHhcCCCEEEEECCCc
Confidence 3579999999 799888877765 67766 56887643321 12235666789999999999999999965
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.95 E-value=0.059 Score=53.61 Aligned_cols=66 Identities=15% Similarity=0.138 Sum_probs=45.4
Q ss_pred CcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCC--C-c-----c-ccCCce-------ecCCHHhhhcCCcEEEE
Q 007040 162 GLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKG--K-V-----T-FPSAAR-------RMDTLNDLLAASDVISL 224 (620)
Q Consensus 162 GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~--~-~-----~-~~~g~~-------~~~sL~eLL~~sDvVil 224 (620)
.++|.|+|. |.||+.+++.|...|++|++.+|..... . . . ...++. ..+++.+++..+|+|+.
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~ 83 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS 83 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEE
Confidence 467999995 9999999999999999999999875321 0 0 0 011111 12345666777888877
Q ss_pred ccc
Q 007040 225 HCA 227 (620)
Q Consensus 225 ~lP 227 (620)
+.+
T Consensus 84 ~a~ 86 (308)
T 1qyc_A 84 TVG 86 (308)
T ss_dssp CCC
T ss_pred CCc
Confidence 765
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.92 E-value=0.07 Score=55.96 Aligned_cols=102 Identities=16% Similarity=0.198 Sum_probs=63.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhC---------CCEEE-EECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhh
Q 007040 163 LVLGIVGRSASARALATRSLSF---------KMSVL-YFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDET 232 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf---------G~~V~-~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T 232 (620)
.+|||||+|.||+.+++.+... +++|. ++|++..... .+.. .....++++++ +.|+|+.++|.....
T Consensus 4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~-~~~~-~~~~~d~~~ll-~iDvVve~t~~~~~a 80 (332)
T 2ejw_A 4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPR-AIPQ-ELLRAEPFDLL-EADLVVEAMGGVEAP 80 (332)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCC-SSCG-GGEESSCCCCT-TCSEEEECCCCSHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhh-ccCc-ccccCCHHHHh-CCCEEEECCCCcHHH
Confidence 4699999999999999998765 46664 5576653322 2221 23456888888 999999999865321
Q ss_pred HhhcCHHHhhccCCCcEEEEcCCChh-hcHHHHHHHHHcC
Q 007040 233 IQIINAECLQHIKPGAFLVNTGSSQL-LDDCAVKQLLIDG 271 (620)
Q Consensus 233 ~~lI~~~~L~~MK~gAiLINvgRG~v-VDe~AL~~AL~~G 271 (620)
..+ ....|+.|.-+|...=..+ ...++|.++.++.
T Consensus 81 ~~~----~~~AL~aGKhVVtaNkkpla~~~~eL~~~A~~~ 116 (332)
T 2ejw_A 81 LRL----VLPALEAGIPLITANKALLAEAWESLRPFAEEG 116 (332)
T ss_dssp HHH----HHHHHHTTCCEEECCHHHHHHSHHHHHHHHHTT
T ss_pred HHH----HHHHHHcCCeEEECCchhHHHHHHHHHHHHHhC
Confidence 112 2234555656665432223 2445677666665
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=93.91 E-value=0.03 Score=57.84 Aligned_cols=88 Identities=9% Similarity=0.060 Sum_probs=54.7
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCcee---c-CCHHh----hhc--CCcEEEEcccCC
Q 007040 161 RGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR---M-DTLND----LLA--ASDVISLHCAVT 229 (620)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~---~-~sL~e----LL~--~sDvVil~lPlT 229 (620)
.|.+|.|+|. |.||..+++.++.+|++|++.+++....+.....+... . .++.+ +.. ..|+|+.++...
T Consensus 159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~v~~~~~~~g~Dvvid~~g~~ 238 (342)
T 4eye_A 159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPIGGP 238 (342)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEESSTTHHHHHHHHTTTSCEEEEEESCC--
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEecCchhHHHHHHHHhCCCCceEEEECCchh
Confidence 5889999998 99999999999999999999998764433111111111 0 12221 111 367777666532
Q ss_pred hhhHhhcCHHHhhccCCCcEEEEcC
Q 007040 230 DETIQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 230 ~~T~~lI~~~~L~~MK~gAiLINvg 254 (620)
.-...+..|+++..+|.+|
T Consensus 239 ------~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 239 ------AFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp ------CHHHHHHTEEEEEEEEEC-
T ss_pred ------HHHHHHHhhcCCCEEEEEE
Confidence 1234566677777777765
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.91 E-value=0.094 Score=49.12 Aligned_cols=68 Identities=13% Similarity=-0.099 Sum_probs=46.5
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCC--EEEEECCCCCCCCcc---ccCCceecCCHHhhhcCCcEEEEcccCCh
Q 007040 161 RGLVLGIVG-RSASARALATRSLSFKM--SVLYFDVPEGKGKVT---FPSAARRMDTLNDLLAASDVISLHCAVTD 230 (620)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafG~--~V~~~dr~~~~~~~~---~~~g~~~~~sL~eLL~~sDvVil~lPlT~ 230 (620)
.+++|.|.| .|.||+.+++.|...|. +|++.+|+....... ........+++.+++ +|+|+.+.....
T Consensus 4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~~~~~~~~~~~D~~~~~~~~~~~--~d~vi~~a~~~~ 77 (215)
T 2a35_A 4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPLAELLPQLDGS--IDTAFCCLGTTI 77 (215)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCCTTEECCBSCHHHHGGGCCSC--CSEEEECCCCCH
T ss_pred CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcccCCCceEEeccccCHHHHHHhh--hcEEEECeeecc
Confidence 467899998 89999999999999998 999999876541100 000011112333444 899999887654
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=93.90 E-value=0.06 Score=54.95 Aligned_cols=71 Identities=20% Similarity=0.121 Sum_probs=49.8
Q ss_pred eecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-----------cCCc-------eecCCHHhhhcCC
Q 007040 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTF-----------PSAA-------RRMDTLNDLLAAS 219 (620)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~-----------~~g~-------~~~~sL~eLL~~s 219 (620)
.+.+++|.|.|. |.||+.+++.|...|++|+++++......... ..++ ....++.+++..+
T Consensus 24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 103 (352)
T 1sb8_A 24 PAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV 103 (352)
T ss_dssp HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred CccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCC
Confidence 367889999987 99999999999999999999998653211000 0111 1122456778888
Q ss_pred cEEEEcccCC
Q 007040 220 DVISLHCAVT 229 (620)
Q Consensus 220 DvVil~lPlT 229 (620)
|+|+.+....
T Consensus 104 d~vih~A~~~ 113 (352)
T 1sb8_A 104 DYVLHQAALG 113 (352)
T ss_dssp SEEEECCSCC
T ss_pred CEEEECCccc
Confidence 9988877643
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=93.88 E-value=0.026 Score=57.76 Aligned_cols=35 Identities=9% Similarity=-0.051 Sum_probs=32.5
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 161 RGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
.|+++.|+|. |.||..+++.++..|++|++.+++.
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~ 180 (333)
T 1v3u_A 145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSD 180 (333)
T ss_dssp SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5889999998 9999999999999999999999865
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=93.83 E-value=0.031 Score=57.45 Aligned_cols=89 Identities=11% Similarity=0.129 Sum_probs=55.3
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCcee---c--CCHHhhh----cCCcEEEEcccCChh
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR---M--DTLNDLL----AASDVISLHCAVTDE 231 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~---~--~sL~eLL----~~sDvVil~lPlT~~ 231 (620)
.|.+|.|+|.|.||...++.++.+|++|++.+++....+.....|... . .++.+.+ ...|+|+.++...+.
T Consensus 166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g~~~~ 245 (340)
T 3s2e_A 166 PGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVSPKA 245 (340)
T ss_dssp TTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSCCHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCCCHHH
Confidence 588999999999999999999999999999998764333111122111 0 1222222 245777666542211
Q ss_pred hHhhcCHHHhhccCCCcEEEEcC
Q 007040 232 TIQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 232 T~~lI~~~~L~~MK~gAiLINvg 254 (620)
-...+..++++..+|.+|
T Consensus 246 -----~~~~~~~l~~~G~iv~~G 263 (340)
T 3s2e_A 246 -----FSQAIGMVRRGGTIALNG 263 (340)
T ss_dssp -----HHHHHHHEEEEEEEEECS
T ss_pred -----HHHHHHHhccCCEEEEeC
Confidence 123456666777777665
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=93.83 E-value=0.031 Score=59.72 Aligned_cols=34 Identities=6% Similarity=-0.022 Sum_probs=30.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC---CEEEEECCCCC
Q 007040 163 LVLGIVGRSASARALATRSLSFK---MSVLYFDVPEG 196 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG---~~V~~~dr~~~ 196 (620)
++|+|||.|.||+.+|+.|...| ..|.+++++..
T Consensus 2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~ 38 (405)
T 4ina_A 2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLS 38 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHH
Confidence 47999999999999999999888 49999998764
|
| >4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A* | Back alignment and structure |
|---|
Probab=93.82 E-value=0.55 Score=49.74 Aligned_cols=96 Identities=9% Similarity=0.079 Sum_probs=67.2
Q ss_pred eecCcEEEEEeCC--hhhHHHHHHHhhCCCEEEEECCCCCCCCcc-----------ccCCceecCCHHhhhcCCcEEEEc
Q 007040 159 RCRGLVLGIVGRS--ASARALATRSLSFKMSVLYFDVPEGKGKVT-----------FPSAARRMDTLNDLLAASDVISLH 225 (620)
Q Consensus 159 ~L~GktVGIIGlG--~IG~~vA~~LkafG~~V~~~dr~~~~~~~~-----------~~~g~~~~~sL~eLL~~sDvVil~ 225 (620)
.+.|.+|+|||=+ ++..+.+..+..||++|.++.|..-..... ....+....++++.+..+|||..-
T Consensus 178 ~l~gl~ia~vGD~~~~va~S~~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt~ 257 (358)
T 4h31_A 178 ALADIQFAYLGDARNNVGNSLMVGAAKMGMDIRLVGPQAYWPDEELVAACQAIAKQTGGKITLTENVAEGVQGCDFLYTD 257 (358)
T ss_dssp CGGGCEEEEESCTTSHHHHHHHHHHHHHTCEEEEESCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEEC
T ss_pred CcCceEEEecCCCCcccchHHHHHHHhcCceEEEeCCcccCCCHHHHHHHHHHHHHcCCcceeccCHHHHhccCcEEEEE
Confidence 4789999999954 799999999999999999999864222110 011234567899999999999853
Q ss_pred ccC----Chhh---------HhhcCHHHhhc-cCCCcEEEEcC
Q 007040 226 CAV----TDET---------IQIINAECLQH-IKPGAFLVNTG 254 (620)
Q Consensus 226 lPl----T~~T---------~~lI~~~~L~~-MK~gAiLINvg 254 (620)
.=. .++. ..-|+.+.++. .||+++|.-+.
T Consensus 258 ~w~s~~~~~~~~~~~~~~~~~y~v~~~~l~~~ak~~~i~mH~L 300 (358)
T 4h31_A 258 VWVSMGESPEAWDERVALMKPYQVNMNVLKQTGNPNVKFMHCL 300 (358)
T ss_dssp CSSCTTSCTTHHHHHHHHHGGGCBCHHHHHHTTCTTCEEEECS
T ss_pred EEEEcccCchhHHHHHHHHhCcccCHHHHHhcCCCCcEEECCC
Confidence 221 1111 11367888876 47888888764
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=93.82 E-value=0.025 Score=58.33 Aligned_cols=37 Identities=8% Similarity=0.001 Sum_probs=33.4
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhC--CCEEEEECCCCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSF--KMSVLYFDVPEGK 197 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lkaf--G~~V~~~dr~~~~ 197 (620)
.|.+|.|+|.|.||...++.++.+ |++|++.+++...
T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~ 208 (344)
T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKH 208 (344)
T ss_dssp SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHH
Confidence 588999999999999999999999 9999999987543
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=93.82 E-value=0.059 Score=55.60 Aligned_cols=34 Identities=15% Similarity=-0.046 Sum_probs=30.8
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 163 LVLGIVGR-SASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
++|.|.|. |.||+.+++.|...|++|+++++...
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~ 63 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSS 63 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCc
Confidence 57999986 99999999999999999999998764
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=93.80 E-value=0.065 Score=52.89 Aligned_cols=37 Identities=11% Similarity=-0.010 Sum_probs=33.4
Q ss_pred eecCcEEEEEeC---ChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 159 RCRGLVLGIVGR---SASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 159 ~L~GktVGIIGl---G~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
.+.|+++.|.|. |.||+++|+.|...|++|++.+++.
T Consensus 6 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~ 45 (265)
T 1qsg_A 6 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND 45 (265)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH
Confidence 368899999997 6999999999999999999999875
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=93.79 E-value=0.067 Score=54.44 Aligned_cols=65 Identities=14% Similarity=0.100 Sum_probs=45.5
Q ss_pred CcEEEEEeC-ChhhHHHHHHHh-hCCCEEE-EECCCCCC--CCc---c---ccCCceecCCHHhhhcCCcEEEEcc
Q 007040 162 GLVLGIVGR-SASARALATRSL-SFKMSVL-YFDVPEGK--GKV---T---FPSAARRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 162 GktVGIIGl-G~IG~~vA~~Lk-afG~~V~-~~dr~~~~--~~~---~---~~~g~~~~~sL~eLL~~sDvVil~l 226 (620)
.++|+|+|+ |.||+.+++.+. .-|++|. ++|+.... ... . ...++...+++++++..+|+|+-+.
T Consensus 5 ~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~~~DvVIDft 80 (273)
T 1dih_A 5 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFT 80 (273)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECS
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhcCCCEEEEcC
Confidence 358999998 999999999876 5588877 77776532 110 0 0113334567889998999999555
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.75 E-value=0.078 Score=52.83 Aligned_cols=68 Identities=21% Similarity=0.122 Sum_probs=47.6
Q ss_pred CcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCc--------cccCCc-------eecCCHHhhhcCCcEEEEc
Q 007040 162 GLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKV--------TFPSAA-------RRMDTLNDLLAASDVISLH 225 (620)
Q Consensus 162 GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~--------~~~~g~-------~~~~sL~eLL~~sDvVil~ 225 (620)
.++|.|+| .|.||+.+++.|...|++|++.+|+...... ....++ ...+++.+++..+|+|+.+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~ 83 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA 83 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEEC
Confidence 46799998 5999999999999999999999987532100 001111 1223466778888988887
Q ss_pred ccCC
Q 007040 226 CAVT 229 (620)
Q Consensus 226 lPlT 229 (620)
.+..
T Consensus 84 a~~~ 87 (313)
T 1qyd_A 84 LAGG 87 (313)
T ss_dssp CCCS
T ss_pred Cccc
Confidence 7644
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=93.73 E-value=0.17 Score=53.59 Aligned_cols=97 Identities=14% Similarity=0.162 Sum_probs=61.1
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCC-CEEEEECCCCCCCCcc------ccCCce-ecCCHHhhhcCCcEEEEcccCChhhH
Q 007040 163 LVLGIVG-RSASARALATRSLSFK-MSVLYFDVPEGKGKVT------FPSAAR-RMDTLNDLLAASDVISLHCAVTDETI 233 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG-~~V~~~dr~~~~~~~~------~~~g~~-~~~sL~eLL~~sDvVil~lPlT~~T~ 233 (620)
.+||||| .|.+|+++.++|..+- +++..+......+... +..... ...+.++++.++|+|++|+|....
T Consensus 14 ~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~~~~~~~~~~~~Dvvf~alp~~~s-- 91 (351)
T 1vkn_A 14 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGAS-- 91 (351)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTHH--
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhccCceEEeCCHHHhhcCCCEEEECCCcHHH--
Confidence 4699996 7999999999998764 4777665433232210 101111 112455666889999999996532
Q ss_pred hhcCHHHhhccCCCcEEEEcCCChhhcHHHHHH
Q 007040 234 QIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQ 266 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~ 266 (620)
.+....+ .|+.+|+.+..-=.+..+.++
T Consensus 92 ----~~~~~~~-~g~~VIDlSsdfRl~~~~~y~ 119 (351)
T 1vkn_A 92 ----YDLVREL-KGVKIIDLGADFRFDDPGVYR 119 (351)
T ss_dssp ----HHHHTTC-CSCEEEESSSTTTCSSHHHHH
T ss_pred ----HHHHHHh-CCCEEEECChhhhCCchhhhh
Confidence 3334444 799999998654445444443
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=93.72 E-value=0.085 Score=53.30 Aligned_cols=39 Identities=13% Similarity=0.003 Sum_probs=33.9
Q ss_pred ceeecCcEEEEEeCC-h--hhHHHHHHHhhCCCEEEEECCCC
Q 007040 157 MRRCRGLVLGIVGRS-A--SARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 157 ~~~L~GktVGIIGlG-~--IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
+..+.|+++.|.|.+ . ||+++|+.|...|++|++.+++.
T Consensus 26 ~~~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~ 67 (293)
T 3grk_A 26 SGLLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGD 67 (293)
T ss_dssp -CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSH
T ss_pred cccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCH
Confidence 346899999999974 4 99999999999999999998874
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=93.71 E-value=0.064 Score=53.44 Aligned_cols=66 Identities=12% Similarity=-0.018 Sum_probs=47.7
Q ss_pred CcEEEEEeC-ChhhHHHHHHHhhCC-CEEEEECCCCCCCC--ccccCCc-------eecCCHHhhhcCCcEEEEccc
Q 007040 162 GLVLGIVGR-SASARALATRSLSFK-MSVLYFDVPEGKGK--VTFPSAA-------RRMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 162 GktVGIIGl-G~IG~~vA~~LkafG-~~V~~~dr~~~~~~--~~~~~g~-------~~~~sL~eLL~~sDvVil~lP 227 (620)
.++|.|.|. |.||+.+++.|...| ++|++.+|++.... .....++ ...+++.+++..+|+|+.+.+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 81 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN 81 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence 578999987 999999999999888 99999998764321 0001111 122356678889999998775
|
| >3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A | Back alignment and structure |
|---|
Probab=93.71 E-value=0.11 Score=56.62 Aligned_cols=106 Identities=13% Similarity=0.134 Sum_probs=69.1
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEE-EECCCCC-------CCC------------ccccCCceecCCHHhhhc-
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVL-YFDVPEG-------KGK------------VTFPSAARRMDTLNDLLA- 217 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~-~~dr~~~-------~~~------------~~~~~g~~~~~sL~eLL~- 217 (620)
++.|++|.|.|+|++|+.+|+.|...|++|+ +.|.+.. ... ..++ +... .+.++++.
T Consensus 232 ~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~-~a~~-i~~~ei~~~ 309 (440)
T 3aog_A 232 QVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYP-KAEP-LPAADFWGL 309 (440)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCT-TSEE-CCHHHHTTC
T ss_pred CccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCC-CceE-cCchhhhcC
Confidence 6889999999999999999999999999998 4454310 000 0011 1122 24456553
Q ss_pred CCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 218 ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 218 ~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
.|||++-|.. .+.|+.+....++ ..+++-.+-+++- .+| .+.|.+..|.
T Consensus 310 ~~DIlvPcA~-----~n~i~~~na~~l~-ak~VvEgAN~p~t-~eA-~~iL~~~GI~ 358 (440)
T 3aog_A 310 PVEFLVPAAL-----EKQITEQNAWRIR-ARIVAEGANGPTT-PAA-DDILLEKGVL 358 (440)
T ss_dssp CCSEEEECSS-----SSCBCTTTGGGCC-CSEEECCSSSCBC-HHH-HHHHHHHTCE
T ss_pred CCcEEEecCC-----cCccchhhHHHcC-CcEEEecCccccC-HHH-HHHHHHCCCE
Confidence 6999998765 3466666666674 6688888888864 333 3455554443
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=93.67 E-value=0.15 Score=51.67 Aligned_cols=72 Identities=14% Similarity=-0.028 Sum_probs=46.4
Q ss_pred eeecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-----cCCc--eecCCHHhhhcCCcEEEEcccCC
Q 007040 158 RRCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTF-----PSAA--RRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 158 ~~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~-----~~g~--~~~~sL~eLL~~sDvVil~lPlT 229 (620)
..+.+++|.|.|. |.||+.+++.|...|++|+++++......... ...+ ...+-.+..+..+|+|+.+....
T Consensus 23 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vih~A~~~ 102 (343)
T 2b69_A 23 MEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPA 102 (343)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCCCCSEEEECCSCC
T ss_pred cccCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCCccchhhhhhhccCCceEEEeCccCChhhcCCCEEEECcccc
Confidence 3467899999987 99999999999999999999998643211110 0111 12222334566789888776543
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.67 E-value=0.068 Score=53.09 Aligned_cols=37 Identities=24% Similarity=0.169 Sum_probs=32.9
Q ss_pred eecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
++.|+++.|.|. |.||+++|+.|...|++|++.+++.
T Consensus 3 ~l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~ 40 (263)
T 2a4k_A 3 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREE 40 (263)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 367899999975 7899999999999999999999875
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=93.65 E-value=0.14 Score=51.56 Aligned_cols=69 Identities=10% Similarity=0.038 Sum_probs=47.9
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-------cCC-------ceecCCHHhhhc--CCcEEE
Q 007040 161 RGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTF-------PSA-------ARRMDTLNDLLA--ASDVIS 223 (620)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~-------~~g-------~~~~~sL~eLL~--~sDvVi 223 (620)
.+++|.|.| .|.||+.+++.|...|++|++.++......... ... ....+++.+++. ..|+|+
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 83 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAAI 83 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEEE
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEEE
Confidence 467899998 699999999999999999999998764432110 001 112234556666 789888
Q ss_pred EcccCC
Q 007040 224 LHCAVT 229 (620)
Q Consensus 224 l~lPlT 229 (620)
.+....
T Consensus 84 h~A~~~ 89 (341)
T 3enk_A 84 HFAALK 89 (341)
T ss_dssp ECCCCC
T ss_pred ECcccc
Confidence 776543
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=93.65 E-value=0.18 Score=50.33 Aligned_cols=61 Identities=16% Similarity=0.097 Sum_probs=47.1
Q ss_pred CcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhc--CCcEEEEcccCC
Q 007040 162 GLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLA--ASDVISLHCAVT 229 (620)
Q Consensus 162 GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~--~sDvVil~lPlT 229 (620)
+++|.|.| .|.||+.+++.|...|++|+++++.... + ....+++.+++. .+|+|+.+....
T Consensus 3 ~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~~~-D------~~d~~~~~~~~~~~~~d~vih~a~~~ 66 (321)
T 1e6u_A 3 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDEL-N------LLDSRAVHDFFASERIDQVYLAAAKV 66 (321)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTC-C------TTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCccC-C------ccCHHHHHHHHHhcCCCEEEEcCeec
Confidence 57899998 5999999999999999999999876421 1 112245777787 899999887654
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=93.60 E-value=0.14 Score=50.53 Aligned_cols=62 Identities=15% Similarity=0.081 Sum_probs=45.3
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcC--CcEEEEcccCC
Q 007040 163 LVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAA--SDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~--sDvVil~lPlT 229 (620)
++|.|.|. |.||+.+++.|. .|++|+++++...... ......+.+.+++.. +|+|+.+....
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~~~~----~D~~d~~~~~~~~~~~~~d~vih~a~~~ 65 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PVGNLIALDVHSKEFC----GDFSNPKGVAETVRKLRPDVIVNAAAHT 65 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCSSSC----CCTTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred CeEEEECCCCHHHHHHHHHhh-cCCeEEEecccccccc----ccCCCHHHHHHHHHhcCCCEEEECcccC
Confidence 46889986 999999999999 7999999998762211 111223456677776 99999877643
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=93.59 E-value=0.085 Score=54.61 Aligned_cols=71 Identities=18% Similarity=0.118 Sum_probs=51.3
Q ss_pred eecCcEEEEEeC-ChhhHHHHHHHhhCC-CEEEEECCCCCCCCccc--cCCce-------ecCCHHhhhcCCcEEEEccc
Q 007040 159 RCRGLVLGIVGR-SASARALATRSLSFK-MSVLYFDVPEGKGKVTF--PSAAR-------RMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafG-~~V~~~dr~~~~~~~~~--~~g~~-------~~~sL~eLL~~sDvVil~lP 227 (620)
.+.+++|.|.|. |.||+.+++.|...| ++|+++++......... ..++. ..+.+.+++..+|+|+.+..
T Consensus 29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih~A~ 108 (377)
T 2q1s_A 29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQDEYDYVFHLAT 108 (377)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCSCCSEEEECCC
T ss_pred HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhhCCCEEEECCC
Confidence 478899999995 999999999999999 99999998764321111 11111 12235667788999998876
Q ss_pred CC
Q 007040 228 VT 229 (620)
Q Consensus 228 lT 229 (620)
..
T Consensus 109 ~~ 110 (377)
T 2q1s_A 109 YH 110 (377)
T ss_dssp CS
T ss_pred cc
Confidence 54
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=93.57 E-value=0.1 Score=50.65 Aligned_cols=38 Identities=18% Similarity=0.055 Sum_probs=32.7
Q ss_pred ecCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCC
Q 007040 160 CRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGK 197 (620)
Q Consensus 160 L~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~ 197 (620)
..|+++.|.| .|.||+++|+.|...|++|++.+++...
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~ 43 (241)
T 1dhr_A 5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENE 43 (241)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhh
Confidence 4688898887 5799999999999999999999988644
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=93.55 E-value=0.085 Score=55.47 Aligned_cols=92 Identities=18% Similarity=0.229 Sum_probs=56.8
Q ss_pred cEEEEEe-CChhhHHHHHHHhh-CCCEEEEECCCC---CCCCcc---cc--CC---ceecC--CHHhhhcCCcEEEEccc
Q 007040 163 LVLGIVG-RSASARALATRSLS-FKMSVLYFDVPE---GKGKVT---FP--SA---ARRMD--TLNDLLAASDVISLHCA 227 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~Lka-fG~~V~~~dr~~---~~~~~~---~~--~g---~~~~~--sL~eLL~~sDvVil~lP 227 (620)
.+|+|+| .|.+|+.+.+.|.. -.+++..+..+. ..+... ++ .+ ....+ +.++++..+|+|++|+|
T Consensus 5 ~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~Dvvf~a~p 84 (337)
T 3dr3_A 5 LNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPGVDVVFLATA 84 (337)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTTCSEEEECSC
T ss_pred eEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcCCCEEEECCC
Confidence 5799999 69999999999987 456777664333 222210 00 11 11111 45556589999999999
Q ss_pred CChhhHhhcCHHHhhccCCCcEEEEcCCChhh
Q 007040 228 VTDETIQIINAECLQHIKPGAFLVNTGSSQLL 259 (620)
Q Consensus 228 lT~~T~~lI~~~~L~~MK~gAiLINvgRG~vV 259 (620)
... +..+. . ..++.|+.+|+.+..-=.
T Consensus 85 ~~~-s~~~~-~---~~~~~g~~vIDlSa~fR~ 111 (337)
T 3dr3_A 85 HEV-SHDLA-P---QFLEAGCVVFDLSGAFRV 111 (337)
T ss_dssp HHH-HHHHH-H---HHHHTTCEEEECSSTTSS
T ss_pred hHH-HHHHH-H---HHHHCCCEEEEcCCcccc
Confidence 432 12221 1 224679999999865433
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=93.55 E-value=0.12 Score=56.54 Aligned_cols=100 Identities=14% Similarity=0.098 Sum_probs=69.3
Q ss_pred eecCcEEEEEeCC----------hhhHHHHHHHhhCCCEEEEECCCCCCCC-cccc----------CCceecCCHHhhhc
Q 007040 159 RCRGLVLGIVGRS----------ASARALATRSLSFKMSVLYFDVPEGKGK-VTFP----------SAARRMDTLNDLLA 217 (620)
Q Consensus 159 ~L~GktVGIIGlG----------~IG~~vA~~LkafG~~V~~~dr~~~~~~-~~~~----------~g~~~~~sL~eLL~ 217 (620)
.+.|++|+|+|+- .-...|++.|...|++|.+|||...... ..+. .......++.+.+.
T Consensus 325 ~~~~~~v~vlGlafK~~~dD~R~Sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (478)
T 2y0c_A 325 DLTGRTFAIWGLAFKPNTDDMREAPSRELIAELLSRGARIAAYDPVAQEEARRVIALDLADHPSWLERLSFVDDEAQAAR 404 (478)
T ss_dssp CCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHTTTCHHHHTTEEECSSHHHHTT
T ss_pred cCCCCEEEEEecccCCCCCccccChHHHHHHHHHHCCCEEEEECCCccHHHHHhhccccccccccccceeecCCHHHHHh
Confidence 4789999999974 4578899999999999999999863211 1111 02345567889999
Q ss_pred CCcEEEEcccCChhhHhhcCHHHh-hccCCCcEEEEcCCChhhcHHH
Q 007040 218 ASDVISLHCAVTDETIQIINAECL-QHIKPGAFLVNTGSSQLLDDCA 263 (620)
Q Consensus 218 ~sDvVil~lPlT~~T~~lI~~~~L-~~MK~gAiLINvgRG~vVDe~A 263 (620)
.+|+|+++.... +-+ -++-+.+ ..|+ +.++||+ |+ +.|.+.
T Consensus 405 ~ad~~vi~t~~~-~f~-~~~~~~~~~~~~-~~~i~D~-r~-~~~~~~ 446 (478)
T 2y0c_A 405 DADALVIVTEWK-IFK-SPDFVALGRLWK-TPVIFDG-RN-LYEPET 446 (478)
T ss_dssp TCSEEEECSCCG-GGG-SCCHHHHHTTCS-SCEEEES-SC-CSCHHH
T ss_pred CCCEEEEecCCh-Hhh-ccCHHHHHhhcC-CCEEEEC-CC-CCCHHH
Confidence 999999999875 222 3344444 4565 4788886 44 345443
|
| >4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A | Back alignment and structure |
|---|
Probab=93.54 E-value=0.22 Score=52.81 Aligned_cols=94 Identities=12% Similarity=0.094 Sum_probs=63.0
Q ss_pred eecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccc---------cCC--ceecCCHHhhhcCCcEEEEcc
Q 007040 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTF---------PSA--ARRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~---------~~g--~~~~~sL~eLL~~sDvVil~l 226 (620)
.+.|.+|+|||= +++..+++..+..||++|.+..|..-.....+ ..| +....+++ .++.+|||..-+
T Consensus 150 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~-av~~aDVVytd~ 228 (355)
T 4a8p_A 150 KLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDV 228 (355)
T ss_dssp CGGGCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHSCEEEEECCGG-GGTTCSEEEECC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEECCHH-HHcCCCEEEecc
Confidence 378999999986 67888999999999999999998653322111 112 34567899 999999999632
Q ss_pred --cCC------hh----hH--hhcCHHHhhccCCCcEEEEc
Q 007040 227 --AVT------DE----TI--QIINAECLQHIKPGAFLVNT 253 (620)
Q Consensus 227 --PlT------~~----T~--~lI~~~~L~~MK~gAiLINv 253 (620)
... .+ .. --|+.+.++.+|++++|.-+
T Consensus 229 w~smgq~~~~~~er~~~~~~~y~vt~ell~~ak~dai~MHc 269 (355)
T 4a8p_A 229 WYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHC 269 (355)
T ss_dssp SSEETTEECCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEEC
T ss_pred cccCcchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECC
Confidence 100 11 00 22466666666666666654
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=93.52 E-value=0.067 Score=51.38 Aligned_cols=91 Identities=14% Similarity=0.091 Sum_probs=59.6
Q ss_pred eecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhh---cCCcEEEEcccCC-h---
Q 007040 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLL---AASDVISLHCAVT-D--- 230 (620)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL---~~sDvVil~lPlT-~--- 230 (620)
.+.|+++.|.|. |.||+++|+.|...|++|++.+++..- + . ...+++++++ ...|+|+.+.-.. +
T Consensus 3 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~-D--~----~~~~~v~~~~~~~g~id~lv~nAg~~~~~~~ 75 (223)
T 3uce_A 3 GSDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTGL-D--I----SDEKSVYHYFETIGAFDHLIVTAGSYAPAGK 75 (223)
T ss_dssp --CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGTC-C--T----TCHHHHHHHHHHHCSEEEEEECCCCCCCCSC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCccc-C--C----CCHHHHHHHHHHhCCCCEEEECCCCCCCCCC
Confidence 467899999975 789999999999999999999987641 1 1 1112334443 4679998876533 1
Q ss_pred ------h-hH-----h-----hcCHHHhhccCCCcEEEEcCCC
Q 007040 231 ------E-TI-----Q-----IINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 231 ------~-T~-----~-----lI~~~~L~~MK~gAiLINvgRG 256 (620)
+ -. + .+....+..|+++..+||++..
T Consensus 76 ~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~ 118 (223)
T 3uce_A 76 VVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGM 118 (223)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCG
T ss_pred cccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecch
Confidence 1 00 0 1123455677777888888764
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=93.52 E-value=0.11 Score=54.34 Aligned_cols=68 Identities=12% Similarity=-0.009 Sum_probs=47.3
Q ss_pred cEEEEEe-CChhhHH-HH----HHHhhCC-CEE----------EEECCCCCCCCcc-ccCCc-eecCCHHhhhcC--CcE
Q 007040 163 LVLGIVG-RSASARA-LA----TRSLSFK-MSV----------LYFDVPEGKGKVT-FPSAA-RRMDTLNDLLAA--SDV 221 (620)
Q Consensus 163 ktVGIIG-lG~IG~~-vA----~~LkafG-~~V----------~~~dr~~~~~~~~-~~~g~-~~~~sL~eLL~~--sDv 221 (620)
.+||||| +|.||+. .+ ..++..+ ..+ .++|++....... ...++ ..+.++++++++ .|+
T Consensus 7 irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~ 86 (383)
T 3oqb_A 7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALADKNDTM 86 (383)
T ss_dssp EEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHHCSSCCE
T ss_pred eEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCE
Confidence 4799999 9999998 66 6666443 332 4888887543311 11234 356799999976 899
Q ss_pred EEEcccCCh
Q 007040 222 ISLHCAVTD 230 (620)
Q Consensus 222 Vil~lPlT~ 230 (620)
|++++|...
T Consensus 87 V~i~tp~~~ 95 (383)
T 3oqb_A 87 FFDAATTQA 95 (383)
T ss_dssp EEECSCSSS
T ss_pred EEECCCchH
Confidence 999999653
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=93.52 E-value=0.068 Score=56.00 Aligned_cols=67 Identities=15% Similarity=0.143 Sum_probs=43.8
Q ss_pred cEEEEEeCChhhHHHHHHHhh-CCCEEEEE-CCCCCCCCccc-----------c--------CCceecCCHHhhhcCCcE
Q 007040 163 LVLGIVGRSASARALATRSLS-FKMSVLYF-DVPEGKGKVTF-----------P--------SAARRMDTLNDLLAASDV 221 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lka-fG~~V~~~-dr~~~~~~~~~-----------~--------~g~~~~~sL~eLL~~sDv 221 (620)
.+|||+|+|.||+.+++.|.. -+++|.+. |+.+....... . .+.....++++++..+|+
T Consensus 2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vDv 81 (337)
T 1cf2_P 2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI 81 (337)
T ss_dssp EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCCCE
Confidence 369999999999999999986 57887665 44321100000 0 001111256777789999
Q ss_pred EEEcccCC
Q 007040 222 ISLHCAVT 229 (620)
Q Consensus 222 Vil~lPlT 229 (620)
|+.|+|..
T Consensus 82 V~~atp~~ 89 (337)
T 1cf2_P 82 VIDCTPEG 89 (337)
T ss_dssp EEECCSTT
T ss_pred EEECCCch
Confidence 99999965
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.15 Score=52.53 Aligned_cols=88 Identities=11% Similarity=0.040 Sum_probs=57.1
Q ss_pred cEEEEEe-CChhhHHHHHHHhh-CCCEEEE-ECCCCCC--CC--cc----ccCCceecCCHHhhhcCCcEEEEcccCChh
Q 007040 163 LVLGIVG-RSASARALATRSLS-FKMSVLY-FDVPEGK--GK--VT----FPSAARRMDTLNDLLAASDVISLHCAVTDE 231 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~Lka-fG~~V~~-~dr~~~~--~~--~~----~~~g~~~~~sL~eLL~~sDvVil~lPlT~~ 231 (620)
.+|+|+| +|+||+.+++.+.. -++++.+ +|+.... .. .. ...++....++++++..+|+|+-..+ |+
T Consensus 22 irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDFT~--p~ 99 (288)
T 3ijp_A 22 MRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFSQ--PQ 99 (288)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEECSC--HH
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEcCC--HH
Confidence 4799999 99999999999874 5888664 4775422 11 00 12355566899999999999997764 22
Q ss_pred -hHhhcCHHHhhccCCCcEEEEcCCC
Q 007040 232 -TIQIINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 232 -T~~lI~~~~L~~MK~gAiLINvgRG 256 (620)
+... ....++.|.-+|-...|
T Consensus 100 a~~~~----~~~~l~~Gv~vViGTTG 121 (288)
T 3ijp_A 100 ASVLY----ANYAAQKSLIHIIGTTG 121 (288)
T ss_dssp HHHHH----HHHHHHHTCEEEECCCC
T ss_pred HHHHH----HHHHHHcCCCEEEECCC
Confidence 2211 22234456666655555
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=93.46 E-value=0.055 Score=58.97 Aligned_cols=107 Identities=10% Similarity=0.071 Sum_probs=66.2
Q ss_pred cEEEEEeCChhhHHHHHHHhh----------CCCEEE-EECCCCCCCCccccCCceecCCHHhhhcC--CcEEEEcccCC
Q 007040 163 LVLGIVGRSASARALATRSLS----------FKMSVL-YFDVPEGKGKVTFPSAARRMDTLNDLLAA--SDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lka----------fG~~V~-~~dr~~~~~~~~~~~g~~~~~sL~eLL~~--sDvVil~lPlT 229 (620)
.+|||||+|.||+.+++.+.. .+++|. ++|++...... +..+.....++++++.+ .|+|+.++|..
T Consensus 11 irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~-~~~~~~~~~d~~ell~d~diDvVve~tp~~ 89 (444)
T 3mtj_A 11 IHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEA-LAGGLPLTTNPFDVVDDPEIDIVVELIGGL 89 (444)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHH-HHTTCCEESCTHHHHTCTTCCEEEECCCSS
T ss_pred ccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhh-hcccCcccCCHHHHhcCCCCCEEEEcCCCc
Confidence 579999999999999987753 466665 45665432221 11233456789999974 79999999963
Q ss_pred hhhHhhcCHHHhhccCCCcEEEEcCCChhh-cHHHHHHHHHcCCcc
Q 007040 230 DETIQIINAECLQHIKPGAFLVNTGSSQLL-DDCAVKQLLIDGTLA 274 (620)
Q Consensus 230 ~~T~~lI~~~~L~~MK~gAiLINvgRG~vV-De~AL~~AL~~G~I~ 274 (620)
..-..+ ....|+.|.-+|..-=+.+. ...+|.++.++..+.
T Consensus 90 ~~h~~~----~~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~ 131 (444)
T 3mtj_A 90 EPAREL----VMQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVM 131 (444)
T ss_dssp TTHHHH----HHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCC
T ss_pred hHHHHH----HHHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCCe
Confidence 222222 23556666666654332222 235677777765543
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=93.43 E-value=0.033 Score=54.75 Aligned_cols=65 Identities=9% Similarity=0.090 Sum_probs=44.7
Q ss_pred EEEEEeC-ChhhHHHHHHHhhC--CCEEEEECCCCCCCCccccCCc-------eecCCHHhhhcCCcEEEEcccC
Q 007040 164 VLGIVGR-SASARALATRSLSF--KMSVLYFDVPEGKGKVTFPSAA-------RRMDTLNDLLAASDVISLHCAV 228 (620)
Q Consensus 164 tVGIIGl-G~IG~~vA~~Lkaf--G~~V~~~dr~~~~~~~~~~~g~-------~~~~sL~eLL~~sDvVil~lPl 228 (620)
+|.|.|. |.||+.+++.|... |++|++.+++..........++ ...+++.+++..+|+|+.+...
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~ 75 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISSS 75 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC--
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence 3678886 99999999999988 9999999987643221001111 1223466788899999977653
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=93.43 E-value=0.055 Score=53.47 Aligned_cols=68 Identities=13% Similarity=0.074 Sum_probs=49.0
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcc----ccCCceecCCHHhhhcCCcEEEEcccC
Q 007040 161 RGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVT----FPSAARRMDTLNDLLAASDVISLHCAV 228 (620)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~----~~~g~~~~~sL~eLL~~sDvVil~lPl 228 (620)
.+++|.|.| .|.||+.+++.|...|++|++.+++....... ........+++.+++...|+|+.+...
T Consensus 2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~Ag~ 74 (267)
T 3rft_A 2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEECVQCDLADANAVNAMVAGCDGIVHLGGI 74 (267)
T ss_dssp CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCCCTTEEEEECCTTCHHHHHHHHTTCSEEEECCSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCccccCCCCEEEEcCCCCHHHHHHHHcCCCEEEECCCC
Confidence 367899998 79999999999999999999999886443200 001111233466788899999987643
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=93.41 E-value=0.039 Score=56.11 Aligned_cols=87 Identities=11% Similarity=0.014 Sum_probs=56.6
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceec-CCHHhhhcCCcEEEEcccCChhhHhhcCHH
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRM-DTLNDLLAASDVISLHCAVTDETIQIINAE 239 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~-~sL~eLL~~sDvVil~lPlT~~T~~lI~~~ 239 (620)
.|.+|.|+|.|.+|...++.++.+|++|++.+ +....+.....|.... .+.+++-...|+|+-++... . + ..
T Consensus 142 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lGa~~v~~d~~~v~~g~Dvv~d~~g~~-~----~-~~ 214 (315)
T 3goh_A 142 KQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRGVRHLYREPSQVTQKYFAIFDAVNSQ-N----A-AA 214 (315)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHTEEEEESSGGGCCSCEEEEECC-------------T
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcCCCEEEcCHHHhCCCccEEEECCCch-h----H-HH
Confidence 68899999999999999999999999999999 6544332222333211 12333334578888776532 1 1 23
Q ss_pred HhhccCCCcEEEEcC
Q 007040 240 CLQHIKPGAFLVNTG 254 (620)
Q Consensus 240 ~L~~MK~gAiLINvg 254 (620)
.+..++++..+|.++
T Consensus 215 ~~~~l~~~G~~v~~g 229 (315)
T 3goh_A 215 LVPSLKANGHIICIQ 229 (315)
T ss_dssp TGGGEEEEEEEEEEC
T ss_pred HHHHhcCCCEEEEEe
Confidence 567788888888874
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=93.40 E-value=0.082 Score=52.82 Aligned_cols=66 Identities=11% Similarity=0.032 Sum_probs=40.6
Q ss_pred CcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcC--CcEEEEcccC
Q 007040 162 GLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAA--SDVISLHCAV 228 (620)
Q Consensus 162 GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~--sDvVil~lPl 228 (620)
+++|.|.|. |.||+.+++.|...|++|++.+++..... ...........+.+++.. .|+|+.+...
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~ 70 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPK-FEQVNLLDSNAVHHIIHDFQPHVIVHCAAE 70 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC-------------------CHHHHHHHCCSEEEECC--
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCCCC-eEEecCCCHHHHHHHHHhhCCCEEEECCcc
Confidence 578999986 99999999999999999999997653211 111111223456677764 8999887754
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=93.38 E-value=0.14 Score=51.57 Aligned_cols=37 Identities=22% Similarity=0.085 Sum_probs=33.3
Q ss_pred eeecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCC
Q 007040 158 RRCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVP 194 (620)
Q Consensus 158 ~~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~ 194 (620)
.++.|+++.|.|. |.||+++|+.|...|++|++.++.
T Consensus 45 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~ 82 (294)
T 3r3s_A 45 GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLP 82 (294)
T ss_dssp STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCG
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4678999999975 789999999999999999999876
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=93.38 E-value=0.078 Score=55.81 Aligned_cols=87 Identities=11% Similarity=-0.000 Sum_probs=50.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEEEEEC-CCCCCCC--------c------------ccc-CCceecCCHHhhhcCC
Q 007040 163 LVLGIVGRSASARALATRSLSF-KMSVLYFD-VPEGKGK--------V------------TFP-SAARRMDTLNDLLAAS 219 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-G~~V~~~d-r~~~~~~--------~------------~~~-~g~~~~~sL~eLL~~s 219 (620)
.+|||+|+|+||+.+++.|... +++|.+++ ..+.... . .+. ..........+++..+
T Consensus 3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~~v 82 (343)
T 2yyy_A 3 AKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIEDA 82 (343)
T ss_dssp EEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGGGC
T ss_pred eEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhccCC
Confidence 3799999999999999999866 68877664 2211000 0 000 0011112355666789
Q ss_pred cEEEEcccCChhhHhhcCHHHhhccCCCcEEEEc
Q 007040 220 DVISLHCAVTDETIQIINAECLQHIKPGAFLVNT 253 (620)
Q Consensus 220 DvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINv 253 (620)
|+|+.|+|..-... .. + -.+++.|+.+|..
T Consensus 83 DiV~eatg~~~s~~-~a--~-~~~l~aG~~VI~s 112 (343)
T 2yyy_A 83 DIVVDGAPKKIGKQ-NL--E-NIYKPHKVKAILQ 112 (343)
T ss_dssp SEEEECCCTTHHHH-HH--H-HTTTTTTCEEEEC
T ss_pred CEEEECCCccccHH-HH--H-HHHHHCCCEEEEC
Confidence 99999998653111 11 0 2456667666653
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=93.38 E-value=0.14 Score=52.61 Aligned_cols=94 Identities=17% Similarity=0.174 Sum_probs=56.5
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCC--EEEEECC--CCCCCC---cccc------CCceecCCHHhhhcCCcEEEEcccC
Q 007040 163 LVLGIVG-RSASARALATRSLSFKM--SVLYFDV--PEGKGK---VTFP------SAARRMDTLNDLLAASDVISLHCAV 228 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG~--~V~~~dr--~~~~~~---~~~~------~g~~~~~sL~eLL~~sDvVil~lPl 228 (620)
++|+|+| .|.+|..++..|...|. ++..+|+ ...... .... .......+..+.++.||+|+++...
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVi~~ag~ 80 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAGI 80 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhCCCCEEEEcCCC
Confidence 4799999 99999999999987665 7888998 432111 0000 0111111225678999999999864
Q ss_pred Chh---hHh-h--cC-------HHHhhccCCCcEEEEcCCC
Q 007040 229 TDE---TIQ-I--IN-------AECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 229 T~~---T~~-l--I~-------~~~L~~MK~gAiLINvgRG 256 (620)
... ++. + .| .+.+....|++++++++-.
T Consensus 81 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SNP 121 (303)
T 1o6z_A 81 PRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNP 121 (303)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCCh
Confidence 321 110 0 01 1223344778899987543
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=93.37 E-value=0.13 Score=51.85 Aligned_cols=68 Identities=12% Similarity=0.085 Sum_probs=45.4
Q ss_pred CcEEEEEe-CChhhHHHHHHHhhCC--CEEEEECCCCCCCC-cc---c--cCCce-------ecCCHHhhhcCCcEEEEc
Q 007040 162 GLVLGIVG-RSASARALATRSLSFK--MSVLYFDVPEGKGK-VT---F--PSAAR-------RMDTLNDLLAASDVISLH 225 (620)
Q Consensus 162 GktVGIIG-lG~IG~~vA~~LkafG--~~V~~~dr~~~~~~-~~---~--~~g~~-------~~~sL~eLL~~sDvVil~ 225 (620)
+++|.|.| .|.||+.+++.|...| ++|++.++...... .. . ..++. ....+.+++..+|+|+.+
T Consensus 3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~ 82 (336)
T 2hun_A 3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELVRKVDGVVHL 82 (336)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHTCSEEEEC
T ss_pred CCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHHhhCCCEEEEC
Confidence 57899998 6999999999999876 89999988642111 00 0 00111 112355667788999887
Q ss_pred ccCC
Q 007040 226 CAVT 229 (620)
Q Consensus 226 lPlT 229 (620)
....
T Consensus 83 A~~~ 86 (336)
T 2hun_A 83 AAES 86 (336)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 7654
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=93.37 E-value=0.042 Score=57.52 Aligned_cols=90 Identities=18% Similarity=0.156 Sum_probs=56.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCccccCCcee-----cCCHHhhhc--------CCcEEEEcc
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARR-----MDTLNDLLA--------ASDVISLHC 226 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~~~g~~~-----~~sL~eLL~--------~sDvVil~l 226 (620)
.|.+|.|+|.|.+|...++.++.+|+ +|++.+++....+.....|... ..++.+.+. ..|+|+-++
T Consensus 182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~~ 261 (370)
T 4ej6_A 182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECA 261 (370)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEECS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEECC
Confidence 58899999999999999999999999 9999988764332111122211 122323222 367777766
Q ss_pred cCChhhHhhcCHHHhhccCCCcEEEEcCC
Q 007040 227 AVTDETIQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 227 PlT~~T~~lI~~~~L~~MK~gAiLINvgR 255 (620)
... .+ -...+..++++..+|.+|-
T Consensus 262 G~~-~~----~~~~~~~l~~~G~vv~~G~ 285 (370)
T 4ej6_A 262 GVA-ET----VKQSTRLAKAGGTVVILGV 285 (370)
T ss_dssp CCH-HH----HHHHHHHEEEEEEEEECSC
T ss_pred CCH-HH----HHHHHHHhccCCEEEEEec
Confidence 522 11 1234566777777777653
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=93.36 E-value=0.037 Score=54.47 Aligned_cols=66 Identities=8% Similarity=0.076 Sum_probs=46.5
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhC--CCEEEEECCCCCCCCccccCCc-------eecCCHHhhhcCCcEEEEcccC
Q 007040 163 LVLGIVGR-SASARALATRSLSF--KMSVLYFDVPEGKGKVTFPSAA-------RRMDTLNDLLAASDVISLHCAV 228 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~Lkaf--G~~V~~~dr~~~~~~~~~~~g~-------~~~~sL~eLL~~sDvVil~lPl 228 (620)
++|.|.|. |.||+.+++.|... |++|++++++..........++ ...+++.+++..+|+|+.+...
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~ 76 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISGP 76 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCCC
Confidence 45788886 99999999999988 9999999987643221001111 1223466788899999877654
|
| >2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A | Back alignment and structure |
|---|
Probab=93.36 E-value=0.2 Score=54.18 Aligned_cols=106 Identities=19% Similarity=0.198 Sum_probs=66.7
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhh-CCCEEE-EECCCCC-------CCC------------ccccCCceecCCHHhhh-
Q 007040 159 RCRGLVLGIVGRSASARALATRSLS-FKMSVL-YFDVPEG-------KGK------------VTFPSAARRMDTLNDLL- 216 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~Lka-fG~~V~-~~dr~~~-------~~~------------~~~~~g~~~~~sL~eLL- 216 (620)
++.|++|.|.|+|++|+.+|+.|.. .|++|+ +.|.+.. ... ..++ +.... +.++++
T Consensus 206 ~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~-~a~~~-~~~eil~ 283 (415)
T 2tmg_A 206 DPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYP-KGERI-TNEELLE 283 (415)
T ss_dssp CTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCS-SSEEE-CHHHHTT
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCC-CceEc-Cchhhhc
Confidence 5899999999999999999999998 999998 4444310 000 0010 11122 345554
Q ss_pred cCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 217 AASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 217 ~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
..||+++-|... +.|+.+....++ ..+++-.+-+++- .++ .+.|.+..|.
T Consensus 284 ~~~DIliP~A~~-----n~i~~~~a~~l~-ak~V~EgAN~p~t-~~a-~~~l~~~Gi~ 333 (415)
T 2tmg_A 284 LDVDILVPAALE-----GAIHAGNAERIK-AKAVVEGANGPTT-PEA-DEILSRRGIL 333 (415)
T ss_dssp CSCSEEEECSST-----TSBCHHHHTTCC-CSEEECCSSSCBC-HHH-HHHHHHTTCE
T ss_pred CCCcEEEecCCc-----CccCcccHHHcC-CeEEEeCCCcccC-HHH-HHHHHHCCCE
Confidence 368888877653 366777666673 5677777777753 333 3445555443
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=93.33 E-value=0.1 Score=57.56 Aligned_cols=87 Identities=15% Similarity=0.067 Sum_probs=61.4
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCC----ceecCCHHhh-hcCCcEEEEcccCChhhHhhcC
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSA----ARRMDTLNDL-LAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g----~~~~~sL~eL-L~~sDvVil~lPlT~~T~~lI~ 237 (620)
+++.|+|+|.+|+.+|+.|...|++|++.|.++....... .. ....+.|.++ +.++|.|+++++.. ..+++-
T Consensus 349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~-~~i~gD~t~~~~L~~agi~~ad~vi~~~~~d--~~ni~~ 425 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDH-VVVYGDATVGQTLRQAGIDRASGIIVTTNDD--STNIFL 425 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSS-CEEESCSSSSTHHHHHTTTSCSEEEECCSCH--HHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhcC-CEEEeCCCCHHHHHhcCccccCEEEEECCCc--hHHHHH
Confidence 7899999999999999999999999999998876544221 11 1112234444 78899999999865 344555
Q ss_pred HHHhhccCCCcEEEE
Q 007040 238 AECLQHIKPGAFLVN 252 (620)
Q Consensus 238 ~~~L~~MK~gAiLIN 252 (620)
.-..+.+.+...+|-
T Consensus 426 ~~~ak~l~~~~~iia 440 (565)
T 4gx0_A 426 TLACRHLHSHIRIVA 440 (565)
T ss_dssp HHHHHHHCSSSEEEE
T ss_pred HHHHHHHCCCCEEEE
Confidence 556666777744443
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=93.32 E-value=0.17 Score=51.91 Aligned_cols=38 Identities=18% Similarity=0.082 Sum_probs=33.8
Q ss_pred eecCcEEEEEe-CChhhHHHHHHHhh--CCCEEEEECCCCC
Q 007040 159 RCRGLVLGIVG-RSASARALATRSLS--FKMSVLYFDVPEG 196 (620)
Q Consensus 159 ~L~GktVGIIG-lG~IG~~vA~~Lka--fG~~V~~~dr~~~ 196 (620)
.+.+++|.|.| .|-||+.+++.|.. .|++|+++++...
T Consensus 7 ~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~ 47 (362)
T 3sxp_A 7 ELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRS 47 (362)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCC
T ss_pred hcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCc
Confidence 47899999995 69999999999999 9999999998654
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=93.30 E-value=0.039 Score=56.78 Aligned_cols=38 Identities=16% Similarity=0.075 Sum_probs=34.1
Q ss_pred cCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCCCCC
Q 007040 161 RGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPEGKG 198 (620)
Q Consensus 161 ~GktVGIIGlG-~IG~~vA~~LkafG~~V~~~dr~~~~~ 198 (620)
.|.+|.|+|.| .||..+++.++.+|++|++.+++....
T Consensus 144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~ 182 (340)
T 3gms_A 144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHT 182 (340)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTH
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 58899999998 999999999999999999999876543
|
| >1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X* | Back alignment and structure |
|---|
Probab=93.29 E-value=0.22 Score=52.13 Aligned_cols=66 Identities=12% Similarity=-0.019 Sum_probs=52.8
Q ss_pred ecCcEEEE-----EeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcc
Q 007040 160 CRGLVLGI-----VGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 160 L~GktVGI-----IGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~l 226 (620)
+. .+|++ ||=+++..+++..+..||++|.+..|..-........++....+++++++.+|||..-.
T Consensus 167 l~-l~ia~a~~~~vGD~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~ 237 (324)
T 1js1_X 167 PK-VVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKN 237 (324)
T ss_dssp CE-EEEECCCCSSCCCSHHHHHHHHHHHTSSSEEEEECCTTCCCCHHHHTTCEEESCHHHHHTTCSEEEECC
T ss_pred ee-EEEEEEcccccCCcchHHHHHHHHHHCCCEEEEeCCcccCCChhhccceEEECCHHHHhCCCCEEEecC
Confidence 56 88999 99999999999999999999999998654333212124555689999999999999833
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=93.29 E-value=0.12 Score=54.21 Aligned_cols=31 Identities=19% Similarity=0.274 Sum_probs=26.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEEEEECC
Q 007040 163 LVLGIVGRSASARALATRSLSF-KMSVLYFDV 193 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-G~~V~~~dr 193 (620)
.+|||+|+|+||+.+++.|... +++|.+.+.
T Consensus 4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~d 35 (337)
T 3e5r_O 4 IKIGINGFGRIGRLVARVALQSEDVELVAVND 35 (337)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCSSEEEEEEEC
T ss_pred eEEEEECcCHHHHHHHHHHhCCCCeEEEEEEC
Confidence 3799999999999999999875 678776653
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=93.29 E-value=0.12 Score=52.19 Aligned_cols=67 Identities=13% Similarity=0.103 Sum_probs=46.1
Q ss_pred cEEEEEe-CChhhHHHHHHHhhC--CCEEEEECCCCCCCC----ccc-cCCce-------ecCCHHhhhcCCcEEEEccc
Q 007040 163 LVLGIVG-RSASARALATRSLSF--KMSVLYFDVPEGKGK----VTF-PSAAR-------RMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~Lkaf--G~~V~~~dr~~~~~~----~~~-~~g~~-------~~~sL~eLL~~sDvVil~lP 227 (620)
++|.|.| .|.||+.+++.|... |++|+++++...... ... ..++. ....+.+++..+|+|+.+..
T Consensus 5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~ 84 (348)
T 1oc2_A 5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAAKADAIVHYAA 84 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHTTCSEEEECCS
T ss_pred cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHhhhccCCeEEEECCCCCHHHHHHHhhcCCEEEECCc
Confidence 5789998 699999999999987 899999998652111 000 01111 12245677888999988876
Q ss_pred CC
Q 007040 228 VT 229 (620)
Q Consensus 228 lT 229 (620)
..
T Consensus 85 ~~ 86 (348)
T 1oc2_A 85 ES 86 (348)
T ss_dssp CC
T ss_pred cc
Confidence 54
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=93.26 E-value=0.074 Score=55.68 Aligned_cols=89 Identities=9% Similarity=0.079 Sum_probs=52.3
Q ss_pred cEEEEEe-CChhhHHHHHHHhhC---CCEEEEECCCCCCCCccccCCc-eecCCHH-hhhcCCcEEEEcccCChhhHhhc
Q 007040 163 LVLGIVG-RSASARALATRSLSF---KMSVLYFDVPEGKGKVTFPSAA-RRMDTLN-DLLAASDVISLHCAVTDETIQII 236 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~Lkaf---G~~V~~~dr~~~~~~~~~~~g~-~~~~sL~-eLL~~sDvVil~lPlT~~T~~lI 236 (620)
.+|||+| +|.||+.+.+.|... .++|..+.............+. ....+++ +.+..+|+|+.|+|... +....
T Consensus 4 ~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~~~~~i~~~~~~~~~~~~vDvVf~a~g~~~-s~~~a 82 (336)
T 2r00_A 4 FNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDWSQVHIALFSAGGEL-SAKWA 82 (336)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEETTEEEEEEEGGGCCGGGCSEEEECSCHHH-HHHHH
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceeecCceeEEecCChHHhcCCCEEEECCCchH-HHHHH
Confidence 5799999 999999999999865 4577766532222110000111 1111121 24568999999999542 22221
Q ss_pred CHHHhhccCCCcEEEEcCCC
Q 007040 237 NAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 237 ~~~~L~~MK~gAiLINvgRG 256 (620)
. .+++.|+.+|+.+--
T Consensus 83 -~---~~~~~G~~vId~s~~ 98 (336)
T 2r00_A 83 -P---IAAEAGVVVIDNTSH 98 (336)
T ss_dssp -H---HHHHTTCEEEECSST
T ss_pred -H---HHHHcCCEEEEcCCc
Confidence 1 224568889987643
|
| >4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E | Back alignment and structure |
|---|
Probab=93.26 E-value=0.083 Score=57.68 Aligned_cols=109 Identities=7% Similarity=0.084 Sum_probs=66.1
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCC--------CCCCCc----------------cc--cCCceecCC
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVP--------EGKGKV----------------TF--PSAARRMDT 211 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~--------~~~~~~----------------~~--~~g~~~~~s 211 (620)
.++.|++|.|=|+|++|..+|+.|...|++|++.+-+ .-..+. .+ ..+....+
T Consensus 231 ~~l~Gk~vaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~~~g~~~~~- 309 (450)
T 4fcc_A 231 MGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGLVYLE- 309 (450)
T ss_dssp CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHHHHTCEEEE-
T ss_pred CCcCCCEEEEeCCChHHHHHHHHHHhcCCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccccCCcEEec-
Confidence 3589999999999999999999999999999876532 111000 00 00111111
Q ss_pred HHhh-hcCCcEEEEcccCChhhHhhcCHHHhhccCCC--cEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 212 LNDL-LAASDVISLHCAVTDETIQIINAECLQHIKPG--AFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 212 L~eL-L~~sDvVil~lPlT~~T~~lI~~~~L~~MK~g--AiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
-+++ --.|||.+-|. +.+.|+.+....++.. .++++-+-+.+-.+. .+.|.+..|.
T Consensus 310 ~~~i~~~~~DI~iPcA-----l~~~I~~~~a~~L~a~g~k~IaEgAN~p~t~eA--~~iL~~rGIl 368 (450)
T 4fcc_A 310 GQQPWSVPVDIALPCA-----TQNELDVDAAHQLIANGVKAVAEGANMPTTIEA--TELFQQAGVL 368 (450)
T ss_dssp TCCGGGSCCSEEEECS-----CTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHH--HHHHHHTTCE
T ss_pred CcccccCCccEEeecc-----ccccccHHHHHHHHhcCceEEecCCCCCCCHHH--HHHHHHCCCE
Confidence 1112 23588877554 4457777777777543 567777777654332 2455555554
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=93.25 E-value=0.13 Score=53.72 Aligned_cols=110 Identities=15% Similarity=0.026 Sum_probs=66.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhC--------CCEEE-EECCCCCCCCccc----------cCCce-ecC---CHHhhh-cC
Q 007040 163 LVLGIVGRSASARALATRSLSF--------KMSVL-YFDVPEGKGKVTF----------PSAAR-RMD---TLNDLL-AA 218 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf--------G~~V~-~~dr~~~~~~~~~----------~~g~~-~~~---sL~eLL-~~ 218 (620)
.+|||||+|.||+.+++.+... +++|. ++|++.......+ ..++. ... ++++++ ..
T Consensus 7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll~~~ 86 (331)
T 3c8m_A 7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEALARD 86 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHHHSS
T ss_pred EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHhCCC
Confidence 4799999999999999998754 36664 5576653322101 01111 223 788887 35
Q ss_pred CcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhh-cHHHHHHHHHcCCc
Q 007040 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLL-DDCAVKQLLIDGTL 273 (620)
Q Consensus 219 sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vV-De~AL~~AL~~G~I 273 (620)
.|+|+.++|.. .|.+.--.-....|+.|.-+|...-..+. ..++|.++.++..+
T Consensus 87 iDvVv~~t~~~-~~~~~~~~~~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~gv 141 (331)
T 3c8m_A 87 FDIVVDATPAS-ADGKKELAFYKETFENGKDVVTANKSGLANFWPEIMEYARSNNR 141 (331)
T ss_dssp CSEEEECSCCC-SSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCEEEECCCCC-CccchHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHHcCC
Confidence 79999999975 21111112234556677777765444442 33557766655443
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.25 E-value=0.098 Score=52.68 Aligned_cols=66 Identities=9% Similarity=0.034 Sum_probs=45.9
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCc-------eecCCHHhhhcCCcEEEEcccC
Q 007040 163 LVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA-------RRMDTLNDLLAASDVISLHCAV 228 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~-------~~~~sL~eLL~~sDvVil~lPl 228 (620)
++|.|.| .|.||+.+++.|...|++|++++++..........++ ...+++.+++..+|+|+.+...
T Consensus 14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~~ 87 (342)
T 2x4g_A 14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAGY 87 (342)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC---
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCcc
Confidence 5899998 5999999999999999999999987654321111011 1123466778889999887764
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.24 E-value=0.15 Score=51.36 Aligned_cols=67 Identities=21% Similarity=0.193 Sum_probs=45.1
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCc-------------cccCCceecCCHHhhhcC--CcEEEEcc
Q 007040 163 LVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKV-------------TFPSAARRMDTLNDLLAA--SDVISLHC 226 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~-------------~~~~g~~~~~sL~eLL~~--sDvVil~l 226 (620)
++|.|.| .|.||+.+++.|...|++|+++++....... ..........++.+++.. .|+|+.+.
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A 81 (347)
T 1orr_A 2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLA 81 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred cEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhccCCCEEEECC
Confidence 4688998 6999999999999999999999875321110 000001112245667777 89998877
Q ss_pred cCC
Q 007040 227 AVT 229 (620)
Q Consensus 227 PlT 229 (620)
...
T Consensus 82 ~~~ 84 (347)
T 1orr_A 82 GQV 84 (347)
T ss_dssp CCC
T ss_pred ccc
Confidence 653
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=93.13 E-value=0.027 Score=58.16 Aligned_cols=68 Identities=10% Similarity=0.017 Sum_probs=46.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhC--------CCEEE-EECCCCCCCCcc-ccCCc-eecCCHHhhhcC--CcEEEEcccCC
Q 007040 163 LVLGIVGRSASARALATRSLSF--------KMSVL-YFDVPEGKGKVT-FPSAA-RRMDTLNDLLAA--SDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf--------G~~V~-~~dr~~~~~~~~-~~~g~-~~~~sL~eLL~~--sDvVil~lPlT 229 (620)
.+|||||+|.||+.-++.++.. +++|. ++|+++...... ...++ ..+.+++++|++ .|+|++++|..
T Consensus 7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~tP~~ 86 (390)
T 4h3v_A 7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCTPGD 86 (390)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECSCGG
T ss_pred CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChH
Confidence 4799999999999887776543 23544 668876433211 11232 356789999965 79999999965
Q ss_pred h
Q 007040 230 D 230 (620)
Q Consensus 230 ~ 230 (620)
-
T Consensus 87 ~ 87 (390)
T 4h3v_A 87 S 87 (390)
T ss_dssp G
T ss_pred H
Confidence 3
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=93.05 E-value=0.24 Score=51.83 Aligned_cols=89 Identities=13% Similarity=0.160 Sum_probs=53.2
Q ss_pred cEEEEEeCChhhHHHHHHHhh-CCCEEEEECCC-CCCCC-----------cccc------------CCc----eecCCHH
Q 007040 163 LVLGIVGRSASARALATRSLS-FKMSVLYFDVP-EGKGK-----------VTFP------------SAA----RRMDTLN 213 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lka-fG~~V~~~dr~-~~~~~-----------~~~~------------~g~----~~~~sL~ 213 (620)
.+|||+|+|+||+.+++.|.. -+++|.+.+.. ..... ..+. .+. ....+++
T Consensus 4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d~~ 83 (335)
T 1u8f_O 4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPS 83 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred eEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCCHH
Confidence 379999999999999999875 46887766531 11100 0010 000 0112566
Q ss_pred hh-h--cCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCC
Q 007040 214 DL-L--AASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 214 eL-L--~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG 256 (620)
++ + ..+|+|+.|+|..... +..-.+++.|+..|.++-.
T Consensus 84 ~l~~~~~~vDvV~eatg~~~~~-----e~a~~~l~aGak~V~iSap 124 (335)
T 1u8f_O 84 KIKWGDAGAEYVVESTGVFTTM-----EKAGAHLQGGAKRVIISAP 124 (335)
T ss_dssp GCCTTTTTCCEEEECSSSCCSH-----HHHGGGGGGTCSEEEESSC
T ss_pred HCccccCCCCEEEECCCchhhH-----HHHHHHHhCCCeEEEeccC
Confidence 65 2 5789999999955221 1223456778666666554
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=92.98 E-value=0.12 Score=50.58 Aligned_cols=39 Identities=15% Similarity=0.029 Sum_probs=34.0
Q ss_pred eecCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCC
Q 007040 159 RCRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGK 197 (620)
Q Consensus 159 ~L~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~ 197 (620)
.+.|+++.|.| .|.||+++|+.|...|++|++.+++...
T Consensus 12 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~ 51 (247)
T 1uzm_A 12 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGA 51 (247)
T ss_dssp CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHH
Confidence 47889988887 5899999999999999999999987644
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.97 E-value=0.14 Score=52.71 Aligned_cols=34 Identities=21% Similarity=-0.016 Sum_probs=30.6
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 163 LVLGIVG-RSASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
++|.|.| .|.||+.+++.|...|++|+++++...
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 59 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS 59 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEECCcc
Confidence 5799998 699999999999999999999998754
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.97 E-value=0.037 Score=57.65 Aligned_cols=37 Identities=11% Similarity=0.048 Sum_probs=33.0
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGK 197 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~ 197 (620)
.|.+|.|+|.|.||...++.++.+|+ +|++.+++...
T Consensus 190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~ 227 (371)
T 1f8f_A 190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESR 227 (371)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHH
Confidence 58899999999999999999999999 79999876533
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=92.96 E-value=0.26 Score=52.14 Aligned_cols=88 Identities=14% Similarity=0.188 Sum_probs=54.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEEEEECC-CCCCC--------C---ccccC------------C--cee--cCCHH
Q 007040 163 LVLGIVGRSASARALATRSLSF-KMSVLYFDV-PEGKG--------K---VTFPS------------A--ARR--MDTLN 213 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-G~~V~~~dr-~~~~~--------~---~~~~~------------g--~~~--~~sL~ 213 (620)
.+|||+|+|.||+.+.+.|... .++|.+.+. ..... . ..+.. + ... ..+++
T Consensus 18 ikVgI~G~G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~~dp~ 97 (354)
T 3cps_A 18 GTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKDPA 97 (354)
T ss_dssp CEEEEECCSHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEECCSCGG
T ss_pred eEEEEECCCHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEecCChH
Confidence 3899999999999999999876 788877763 32110 0 00000 0 001 11444
Q ss_pred hh-h--cCCcEEEEcccCChhhHhhcCHHHhhccCCCc--EEEEcCC
Q 007040 214 DL-L--AASDVISLHCAVTDETIQIINAECLQHIKPGA--FLVNTGS 255 (620)
Q Consensus 214 eL-L--~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gA--iLINvgR 255 (620)
++ + ..+|+|+.|+|.... . +..-.+++.|+ ++|+.+-
T Consensus 98 ~i~w~~~~vDvV~eatg~~~s-~----e~a~~~l~~GakkvVId~pa 139 (354)
T 3cps_A 98 EIPWGASGAQIVCESTGVFTT-E----EKASLHLKGGAKKVIISAPP 139 (354)
T ss_dssp GCCHHHHTCCEEEECSSSCCS-H----HHHGGGGTTTCSEEEESSCC
T ss_pred HCCcccCCCCEEEECCCchhh-H----HHHHHHHHcCCcEEEEeCCC
Confidence 44 2 579999999995422 1 12234467788 9998864
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=92.87 E-value=0.038 Score=56.78 Aligned_cols=36 Identities=8% Similarity=-0.020 Sum_probs=32.8
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 161 RGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
.|++|.|+|. |.||..+++.++..|++|++.+++..
T Consensus 155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~ 191 (345)
T 2j3h_A 155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKE 191 (345)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 5889999997 99999999999999999999998653
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=92.86 E-value=0.15 Score=50.91 Aligned_cols=65 Identities=11% Similarity=-0.032 Sum_probs=44.9
Q ss_pred CcEEEEEe-CChhhHHHHHHHhhCCCEEEEECC-CCCCCCc-----c----------ccCCceecCCHHhhhcCCcEEEE
Q 007040 162 GLVLGIVG-RSASARALATRSLSFKMSVLYFDV-PEGKGKV-----T----------FPSAARRMDTLNDLLAASDVISL 224 (620)
Q Consensus 162 GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr-~~~~~~~-----~----------~~~g~~~~~sL~eLL~~sDvVil 224 (620)
|++|.|.| .|-||+.+++.|...|++|++..+ ....... . .........++.++++.+|+|+.
T Consensus 1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih 80 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIEGCVGIFH 80 (322)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHHHTTCSEEEE
T ss_pred CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHHHcCCCEEEE
Confidence 57899998 699999999999999999999887 4321000 0 00011223456778889999988
Q ss_pred cc
Q 007040 225 HC 226 (620)
Q Consensus 225 ~l 226 (620)
+.
T Consensus 81 ~A 82 (322)
T 2p4h_X 81 TA 82 (322)
T ss_dssp CC
T ss_pred cC
Confidence 76
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=92.82 E-value=0.13 Score=53.22 Aligned_cols=68 Identities=18% Similarity=0.044 Sum_probs=49.3
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCc-------eecCCHHhhhcCCcEEEEcccC
Q 007040 161 RGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA-------RRMDTLNDLLAASDVISLHCAV 228 (620)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~-------~~~~sL~eLL~~sDvVil~lPl 228 (620)
.+++|.|.|. |.||+.+++.|...|++|+++++...........++ ...+++.+++..+|+|+.+...
T Consensus 28 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~ 103 (379)
T 2c5a_A 28 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAAD 103 (379)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred cCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhCCCCEEEECcee
Confidence 5789999987 999999999999999999999987644321111111 1122466778889999887654
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=92.80 E-value=0.039 Score=57.57 Aligned_cols=89 Identities=12% Similarity=0.078 Sum_probs=54.8
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCcee-----cCCHHhhhc-----CCcEEEEcccCC
Q 007040 161 RGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR-----MDTLNDLLA-----ASDVISLHCAVT 229 (620)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~-----~~sL~eLL~-----~sDvVil~lPlT 229 (620)
.|.+|.|+| .|.||..+++.++.+|++|++.+++....+.....|... ..++.+.+. ..|+|+.++..
T Consensus 163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~- 241 (362)
T 2c0c_A 163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYESVGG- 241 (362)
T ss_dssp TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEEEEECSCT-
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCEEEECCCH-
Confidence 588999999 799999999999999999999998753322111112110 012222221 35777766653
Q ss_pred hhhHhhcCHHHhhccCCCcEEEEcCC
Q 007040 230 DETIQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 230 ~~T~~lI~~~~L~~MK~gAiLINvgR 255 (620)
+ . -...+..|+++..+|.+|.
T Consensus 242 ~----~-~~~~~~~l~~~G~iv~~g~ 262 (362)
T 2c0c_A 242 A----M-FDLAVDALATKGRLIVIGF 262 (362)
T ss_dssp H----H-HHHHHHHEEEEEEEEECCC
T ss_pred H----H-HHHHHHHHhcCCEEEEEeC
Confidence 1 1 1234566666666666654
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=92.79 E-value=0.069 Score=58.28 Aligned_cols=106 Identities=14% Similarity=0.090 Sum_probs=63.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEEE-EECCCCCCCCccc----c--------------------CCceecCCHHhhh
Q 007040 163 LVLGIVGRSASARALATRSLSF-KMSVL-YFDVPEGKGKVTF----P--------------------SAARRMDTLNDLL 216 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-G~~V~-~~dr~~~~~~~~~----~--------------------~g~~~~~sL~eLL 216 (620)
.+|||||+|.||+.++..+... +++|. ++|++........ . .....+.++++++
T Consensus 24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~eeLL 103 (446)
T 3upl_A 24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDLIL 103 (446)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHHHH
T ss_pred eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHHHh
Confidence 4699999999999999988754 77755 5677764322111 1 0133567899999
Q ss_pred cC--CcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCCh-hhcHHHHHHHHHcCC
Q 007040 217 AA--SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQ-LLDDCAVKQLLIDGT 272 (620)
Q Consensus 217 ~~--sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~-vVDe~AL~~AL~~G~ 272 (620)
+. .|+|++++|.. .. |. .-.+..|+.|.-++...-.- +..-..|.++-++..
T Consensus 104 ~d~dIDaVviaTp~p-~~-H~--e~a~~AL~AGKHVv~~nk~l~~~eg~eL~~~A~e~G 158 (446)
T 3upl_A 104 SNPLIDVIIDATGIP-EV-GA--ETGIAAIRNGKHLVMMNVEADVTIGPYLKAQADKQG 158 (446)
T ss_dssp TCTTCCEEEECSCCH-HH-HH--HHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCEEEEcCCCh-HH-HH--HHHHHHHHcCCcEEecCcccCHHHHHHHHHHHHHhC
Confidence 84 89999999854 21 11 12344455565555321111 122344555555433
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=92.78 E-value=0.12 Score=51.37 Aligned_cols=39 Identities=13% Similarity=0.022 Sum_probs=34.8
Q ss_pred eeecCcEEEEEeCC---hhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 158 RRCRGLVLGIVGRS---ASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 158 ~~L~GktVGIIGlG---~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
.+|.||++.|-|.+ .||+++|+.|...|++|++.+++..
T Consensus 2 ~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~ 43 (256)
T 4fs3_A 2 LNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKER 43 (256)
T ss_dssp CCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHH
Confidence 46899999999975 6999999999999999999998753
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=92.72 E-value=0.79 Score=49.73 Aligned_cols=38 Identities=18% Similarity=-0.036 Sum_probs=35.4
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
.++.|++|.|||.|.+|.+.++.|...|++|+++++..
T Consensus 8 ~~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~ 45 (457)
T 1pjq_A 8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF 45 (457)
T ss_dssp ECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred EECCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCC
Confidence 46899999999999999999999999999999999854
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=92.68 E-value=0.16 Score=53.24 Aligned_cols=39 Identities=15% Similarity=0.185 Sum_probs=35.1
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~ 195 (620)
...|.+.+|.|||+|.+|..+|+.|...|. ++..+|...
T Consensus 31 q~~L~~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~ 70 (346)
T 1y8q_A 31 QKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQ 70 (346)
T ss_dssp HHHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred HHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCC
Confidence 457899999999999999999999999998 899998653
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.63 E-value=0.059 Score=56.57 Aligned_cols=37 Identities=14% Similarity=0.049 Sum_probs=33.2
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCC-CEEEEECCCCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFK-MSVLYFDVPEGK 197 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG-~~V~~~dr~~~~ 197 (620)
.|.+|.|+|.|.||...++.++.+| .+|++.+++...
T Consensus 195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~ 232 (380)
T 1vj0_A 195 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNR 232 (380)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHH
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHH
Confidence 5889999999999999999999999 599999987643
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=92.63 E-value=0.089 Score=56.55 Aligned_cols=87 Identities=18% Similarity=0.205 Sum_probs=61.6
Q ss_pred cCcEEEEEeCC----------hhhHHHHHHHhhCCCEEEEECCCCCCCC-----ccccC---C---ceecCCHHhhhcCC
Q 007040 161 RGLVLGIVGRS----------ASARALATRSLSFKMSVLYFDVPEGKGK-----VTFPS---A---ARRMDTLNDLLAAS 219 (620)
Q Consensus 161 ~GktVGIIGlG----------~IG~~vA~~LkafG~~V~~~dr~~~~~~-----~~~~~---g---~~~~~sL~eLL~~s 219 (620)
.|++|+|+|+. .-...|++.|...|++|.+|||...... ..+.. . .....++.+.+..+
T Consensus 312 ~~~~v~vlGlafK~~~~d~r~s~~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (436)
T 1mv8_A 312 DTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASS 391 (436)
T ss_dssp SCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHHHC
T ss_pred cCCEEEEEccccCCCCCccccCcHHHHHHHHHHCCCEEEEECCCCChhhccchhhhhcccccccccccccCCHHHHHhCC
Confidence 68999999997 5689999999999999999999742211 01110 0 12346788899999
Q ss_pred cEEEEcccCChhhHhhcCHHHhhccCCCcEEEEc
Q 007040 220 DVISLHCAVTDETIQIINAECLQHIKPGAFLVNT 253 (620)
Q Consensus 220 DvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINv 253 (620)
|+|+++.... +-+.+ + .+.|+ +.++|++
T Consensus 392 d~~vi~~~~~-~~~~~-~---~~~~~-~~~i~D~ 419 (436)
T 1mv8_A 392 DVLVLGNGDE-LFVDL-V---NKTPS-GKKLVDL 419 (436)
T ss_dssp SEEEECSCCG-GGHHH-H---HSCCT-TCEEEES
T ss_pred cEEEEeCCcH-HHHhh-h---HHhcC-CCEEEEC
Confidence 9999999874 33222 2 34565 6788886
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=92.63 E-value=0.033 Score=57.03 Aligned_cols=90 Identities=19% Similarity=0.044 Sum_probs=57.0
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-ccCCcee---c--CCHHhhh-----cCCcEEEEcccC
Q 007040 161 RGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVT-FPSAARR---M--DTLNDLL-----AASDVISLHCAV 228 (620)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~-~~~g~~~---~--~sL~eLL-----~~sDvVil~lPl 228 (620)
.|++|.|+|. |.||..+++.++..|++|++.+++....+.. ...+... . .++.+.+ ...|+|+.++..
T Consensus 149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~ 228 (336)
T 4b7c_A 149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFDNVGG 228 (336)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEEEESSCH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceEEEECCCc
Confidence 5889999999 9999999999999999999999875432211 1122211 0 1222221 136777776652
Q ss_pred ChhhHhhcCHHHhhccCCCcEEEEcCCC
Q 007040 229 TDETIQIINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 229 T~~T~~lI~~~~L~~MK~gAiLINvgRG 256 (620)
. .-...+..|+++..+|.+|..
T Consensus 229 --~----~~~~~~~~l~~~G~iv~~G~~ 250 (336)
T 4b7c_A 229 --E----ILDTVLTRIAFKARIVLCGAI 250 (336)
T ss_dssp --H----HHHHHHTTEEEEEEEEECCCG
T ss_pred --c----hHHHHHHHHhhCCEEEEEeec
Confidence 1 123456677777777777643
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=92.61 E-value=0.1 Score=54.04 Aligned_cols=65 Identities=12% Similarity=0.169 Sum_probs=44.8
Q ss_pred cEEEEEeCChhhHHHHHHHhh--CCCEE-EEECCCCCC-CCc-cccCCce-ecCCHHhhhc-----CCcEEEEccc
Q 007040 163 LVLGIVGRSASARALATRSLS--FKMSV-LYFDVPEGK-GKV-TFPSAAR-RMDTLNDLLA-----ASDVISLHCA 227 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lka--fG~~V-~~~dr~~~~-~~~-~~~~g~~-~~~sL~eLL~-----~sDvVil~lP 227 (620)
.+|||||+|.||+.+++.+.. -++++ .++|+++.. ... ....+.. ...++++++. ..|+|+.++|
T Consensus 5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp 80 (312)
T 1nvm_B 5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATS 80 (312)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSC
T ss_pred CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCC
Confidence 479999999999999999944 46665 466777654 221 1122332 2356777764 4799999999
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=92.59 E-value=0.18 Score=55.10 Aligned_cols=104 Identities=13% Similarity=0.113 Sum_probs=71.4
Q ss_pred eecCcEEEEEeC----------ChhhHHHHHHHhhCCCEEEEECCCCCCCC--cccc---------CCceecCCHHhhhc
Q 007040 159 RCRGLVLGIVGR----------SASARALATRSLSFKMSVLYFDVPEGKGK--VTFP---------SAARRMDTLNDLLA 217 (620)
Q Consensus 159 ~L~GktVGIIGl----------G~IG~~vA~~LkafG~~V~~~dr~~~~~~--~~~~---------~g~~~~~sL~eLL~ 217 (620)
.+.|++|+|+|+ ..-...|++.|...|++|.+|||...... .... ..+....++.+.+.
T Consensus 332 ~~~~~~v~vlGlafK~~~dd~R~Spa~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (481)
T 2o3j_A 332 TVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLMEEHAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITVESDPYAAAR 411 (481)
T ss_dssp CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHHHHSCHHHHHHHEEEESSHHHHHT
T ss_pred ccCCCeEEEEeeeeCCCCCccccChHHHHHHHHHHCCCEEEEECCCCCchhhHHHHHhhhccccccCceeecCCHHHHHc
Confidence 368999999997 45678999999999999999999863211 0000 01233467888999
Q ss_pred CCcEEEEcccCChhhHhhcCHHHh-hccCCCcEEEEcCCChhhcHHHHHH
Q 007040 218 ASDVISLHCAVTDETIQIINAECL-QHIKPGAFLVNTGSSQLLDDCAVKQ 266 (620)
Q Consensus 218 ~sDvVil~lPlT~~T~~lI~~~~L-~~MK~gAiLINvgRG~vVDe~AL~~ 266 (620)
.+|+|++++... +-+ -++-+.+ +.|+...++|++ |+ ++|.+.+.+
T Consensus 412 ~ad~~vi~t~~~-~f~-~~~~~~~~~~~~~~~~i~D~-r~-~~~~~~~~~ 457 (481)
T 2o3j_A 412 GAHAIVVLTEWD-EFV-ELNYSQIHNDMQHPAAIFDG-RL-ILDQKALRE 457 (481)
T ss_dssp TCSEEEECSCCG-GGT-TSCHHHHHHHSCSSCEEEES-SS-CSCHHHHHH
T ss_pred CCCEEEEcCCcH-Hhh-ccCHHHHHHhcCCCCEEEEC-CC-CCCHHHHHh
Confidence 999999999875 222 2354444 467766688885 55 456555443
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=92.58 E-value=0.041 Score=56.42 Aligned_cols=36 Identities=6% Similarity=-0.055 Sum_probs=33.1
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 161 RGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
.|++|.|+| .|.||..+++.++..|++|++.+++..
T Consensus 148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~ 184 (334)
T 3qwb_A 148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDE 184 (334)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 688999999 899999999999999999999998653
|
| >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 | Back alignment and structure |
|---|
Probab=92.55 E-value=0.21 Score=54.44 Aligned_cols=107 Identities=9% Similarity=0.115 Sum_probs=72.0
Q ss_pred ecCcEEEEEeCC----hhhHHHHHHHhhC-CCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHh
Q 007040 160 CRGLVLGIVGRS----ASARALATRSLSF-KMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQ 234 (620)
Q Consensus 160 L~GktVGIIGlG----~IG~~vA~~Lkaf-G~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~ 234 (620)
+.-++|.|||.+ .+|..+++.|+.. +..|+.++|.... -.|...+.++.++-...|++++++|.. .+..
T Consensus 6 ~~p~siAVvGas~~~~~~g~~v~~~l~~~g~~~v~pVnP~~~~-----i~G~~~y~sl~~lp~~~Dlavi~vp~~-~~~~ 79 (457)
T 2csu_A 6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEE-----VQGVKAYKSVKDIPDEIDLAIIVVPKR-FVKD 79 (457)
T ss_dssp TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSE-----ETTEECBSSTTSCSSCCSEEEECSCHH-HHHH
T ss_pred cCCCeEEEECcCCCCCchHHHHHHHHHHcCCCEEEEECCCCCe-----ECCEeccCCHHHcCCCCCEEEEecCHH-HHHH
Confidence 456789999998 8899999999988 5899999987421 146666778999888899999999943 3334
Q ss_pred hcCHHHhhccCCCcEEEEc-CCChhhc-----HHHHHHHHHcCCcc
Q 007040 235 IINAECLQHIKPGAFLVNT-GSSQLLD-----DCAVKQLLIDGTLA 274 (620)
Q Consensus 235 lI~~~~L~~MK~gAiLINv-gRG~vVD-----e~AL~~AL~~G~I~ 274 (620)
++. +..+. .-..+++.+ +-.+.-+ +.++.+.+++..+.
T Consensus 80 ~v~-e~~~~-Gi~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~ 123 (457)
T 2csu_A 80 TLI-QCGEK-GVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMR 123 (457)
T ss_dssp HHH-HHHHH-TCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCE
T ss_pred HHH-HHHHc-CCCEEEEecCCCCccccccHHHHHHHHHHHHHcCCE
Confidence 443 23332 233333333 3322223 67788877765554
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=92.54 E-value=0.089 Score=49.23 Aligned_cols=59 Identities=15% Similarity=0.180 Sum_probs=41.6
Q ss_pred EEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcC---CcEEEEccc
Q 007040 164 VLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAA---SDVISLHCA 227 (620)
Q Consensus 164 tVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~---sDvVil~lP 227 (620)
++.|.| .|.||+.+++.|. .|++|++.+++.... .......+++++++.. .|+|+.+.-
T Consensus 5 ~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~~~----~~D~~~~~~~~~~~~~~~~~d~vi~~ag 67 (202)
T 3d7l_A 5 KILLIGASGTLGSAVKERLE-KKAEVITAGRHSGDV----TVDITNIDSIKKMYEQVGKVDAIVSATG 67 (202)
T ss_dssp EEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSSSE----ECCTTCHHHHHHHHHHHCCEEEEEECCC
T ss_pred EEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCccce----eeecCCHHHHHHHHHHhCCCCEEEECCC
Confidence 688886 5899999999999 999999999875311 1111222345555554 799988764
|
| >1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=92.53 E-value=0.25 Score=53.48 Aligned_cols=35 Identities=20% Similarity=0.155 Sum_probs=31.7
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEE-EECC
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVL-YFDV 193 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~-~~dr 193 (620)
++.|+++.|.|+|++|+.+|+.|..+|++|+ +.|.
T Consensus 207 ~l~gk~vaVqG~GnVG~~aa~~L~e~GakVVavsD~ 242 (421)
T 1v9l_A 207 GIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDI 242 (421)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECS
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECC
Confidence 5899999999999999999999999999998 4454
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=92.50 E-value=0.4 Score=48.09 Aligned_cols=50 Identities=14% Similarity=0.252 Sum_probs=38.0
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhC-CCEEEE-ECCCCCCCCccccCCceecCCHHhhhc-CCcEEEEccc
Q 007040 163 LVLGIVGR-SASARALATRSLSF-KMSVLY-FDVPEGKGKVTFPSAARRMDTLNDLLA-ASDVISLHCA 227 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~Lkaf-G~~V~~-~dr~~~~~~~~~~~g~~~~~sL~eLL~-~sDvVil~lP 227 (620)
++|+|+|. |+||+.+++.+... |++|.+ +|+. .++++++. .+|+|+-+.+
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~---------------~dl~~~~~~~~DvvIDfT~ 54 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG---------------DPLSLLTDGNTEVVIDFTH 54 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT---------------CCTHHHHHTTCCEEEECSC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC---------------CCHHHHhccCCcEEEEccC
Confidence 36999995 99999999999865 898874 4542 24666665 7999995554
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=92.49 E-value=0.037 Score=57.40 Aligned_cols=142 Identities=15% Similarity=0.109 Sum_probs=77.3
Q ss_pred cCcEEEEE-eCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCcee-----cCCHHhhh-----cCCcEEEEcccCC
Q 007040 161 RGLVLGIV-GRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR-----MDTLNDLL-----AASDVISLHCAVT 229 (620)
Q Consensus 161 ~GktVGII-GlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~-----~~sL~eLL-----~~sDvVil~lPlT 229 (620)
.|++|.|+ |.|.||..+++.++..|++|++.+++....+.....+... ..++.+.+ ...|+|+.++...
T Consensus 167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~~ 246 (353)
T 4dup_A 167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDIILDMIGAA 246 (353)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCEEEEEESCCGG
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCceEEEECCCHH
Confidence 58899999 6899999999999999999999998764322111111110 01222222 1367776666521
Q ss_pred hhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEEE-cCCCCCCcH
Q 007040 230 DETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLI-LPRSADYSE 308 (620)
Q Consensus 230 ~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVIl-TPHiAg~T~ 308 (620)
.-...+..|+++..+|.+|... +... ..+| -.+++. .|+.+ .-.......
T Consensus 247 ------~~~~~~~~l~~~G~iv~~g~~~-------------~~~~-~~~~--------~~~~~~-~~~~i~g~~~~~~~~ 297 (353)
T 4dup_A 247 ------YFERNIASLAKDGCLSIIAFLG-------------GAVA-EKVN--------LSPIMV-KRLTVTGSTMRPRTA 297 (353)
T ss_dssp ------GHHHHHHTEEEEEEEEECCCTT-------------CSEE-EEEE--------CHHHHH-TTCEEEECCSTTSCH
T ss_pred ------HHHHHHHHhccCCEEEEEEecC-------------CCcc-cCCC--------HHHHHh-cCceEEEEeccccch
Confidence 1133456666666666665321 0000 0011 011211 23322 333444454
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCC
Q 007040 309 EVWMEIRDKAISVLQTFFFDGVI 331 (620)
Q Consensus 309 ea~~~~~~~a~enL~~~L~~G~~ 331 (620)
+.........++.+.+++..|+.
T Consensus 298 ~~~~~~~~~~~~~~~~l~~~g~l 320 (353)
T 4dup_A 298 EEKRAIRDDLLSEVWPLLEAGTV 320 (353)
T ss_dssp HHHHHHHHHHHHHTHHHHHHTSS
T ss_pred hhhHHHHHHHHHHHHHHHHCCCc
Confidence 44555666667777778888874
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=92.49 E-value=0.18 Score=50.91 Aligned_cols=65 Identities=14% Similarity=0.004 Sum_probs=46.3
Q ss_pred CcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCc-----ccc--CCc-------eecCCHHhhhcCCcEEEEcc
Q 007040 162 GLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKV-----TFP--SAA-------RRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 162 GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~-----~~~--~g~-------~~~~sL~eLL~~sDvVil~l 226 (620)
+++|.|.| .|-||+.+++.|...|++|++..++...... ... ..+ .....+.+++..+|+|+.+.
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A 88 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIAGCDFVFHVA 88 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHTTCSEEEEES
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHcCCCEEEEeC
Confidence 68899999 7999999999999999999988776532110 000 111 12245677888999998765
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=92.45 E-value=0.082 Score=54.54 Aligned_cols=70 Identities=17% Similarity=0.230 Sum_probs=50.3
Q ss_pred ecCcEEEEEe-CChhhHHHHHHHhhC-CC-EEEEECCCCCCCC-----------ccccCCceecCCHHhhhcCCcEEEEc
Q 007040 160 CRGLVLGIVG-RSASARALATRSLSF-KM-SVLYFDVPEGKGK-----------VTFPSAARRMDTLNDLLAASDVISLH 225 (620)
Q Consensus 160 L~GktVGIIG-lG~IG~~vA~~Lkaf-G~-~V~~~dr~~~~~~-----------~~~~~g~~~~~sL~eLL~~sDvVil~ 225 (620)
+.|++|.|.| .|.||+.+++.|... |+ +|+++++...... ..+...+...+.+.+++...|+|+.+
T Consensus 19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih~ 98 (344)
T 2gn4_A 19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICIHA 98 (344)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEEEC
Confidence 6789999998 699999999999988 98 9999998753211 00000111223466788899999988
Q ss_pred ccCC
Q 007040 226 CAVT 229 (620)
Q Consensus 226 lPlT 229 (620)
....
T Consensus 99 Aa~~ 102 (344)
T 2gn4_A 99 AALK 102 (344)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=92.40 E-value=0.086 Score=51.68 Aligned_cols=67 Identities=15% Similarity=0.096 Sum_probs=47.7
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCc----cccCCceecCCHHhhhcCCcEEEEcccCC
Q 007040 163 LVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKV----TFPSAARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~----~~~~g~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
++|.|.|. |.||+.+++.|...|++|++++++...... .........+.+.+++...|+|+.+....
T Consensus 3 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~~ 74 (267)
T 3ay3_A 3 NRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEAHEEIVACDLADAQAVHDLVKDCDGIIHLGGVS 74 (267)
T ss_dssp EEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCCCTTEEECCCCTTCHHHHHHHHTTCSEEEECCSCC
T ss_pred ceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCccccCCCccEEEccCCCHHHHHHHHcCCCEEEECCcCC
Confidence 57899987 999999999999999999999987643210 00001112234667888899999887543
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=92.40 E-value=0.047 Score=56.49 Aligned_cols=89 Identities=11% Similarity=0.113 Sum_probs=54.6
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCccccCCcee-----cCCHH----hhhc--CCcEEEEcccC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARR-----MDTLN----DLLA--ASDVISLHCAV 228 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~~~g~~~-----~~sL~----eLL~--~sDvVil~lPl 228 (620)
.|.+|.|+|.|.||...++.++.+|+ +|++.+++....+.....|... ..++. ++.. ..|+|+.++..
T Consensus 166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D~v~d~~g~ 245 (352)
T 3fpc_A 166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVDKVVIAGGD 245 (352)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEEEEEECSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence 58889999999999999999999999 8999998764322111122211 01121 1111 36777766653
Q ss_pred ChhhHhhcCHHHhhccCCCcEEEEcC
Q 007040 229 TDETIQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 229 T~~T~~lI~~~~L~~MK~gAiLINvg 254 (620)
... -...+..++++..+|.+|
T Consensus 246 ~~~-----~~~~~~~l~~~G~~v~~G 266 (352)
T 3fpc_A 246 VHT-----FAQAVKMIKPGSDIGNVN 266 (352)
T ss_dssp TTH-----HHHHHHHEEEEEEEEECC
T ss_pred hHH-----HHHHHHHHhcCCEEEEec
Confidence 211 123455666666666665
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=92.40 E-value=0.046 Score=59.58 Aligned_cols=68 Identities=12% Similarity=0.099 Sum_probs=48.2
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-cCCc-------eecCCHHhh-hcCCcEEEEcccCC
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF-PSAA-------RRMDTLNDL-LAASDVISLHCAVT 229 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~-~~g~-------~~~~sL~eL-L~~sDvVil~lPlT 229 (620)
.|+|-|+|+|.+|+.+|+.|...|+.|++.|..+....... ..++ ...+.|.++ +.+||+++.+++..
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~D 79 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNTD 79 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSCH
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCCh
Confidence 57899999999999999999999999999998864332111 0111 122235554 67899988777643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 620 | ||||
| d1gdha1 | 191 | c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyp | 2e-24 | |
| d1mx3a1 | 193 | c.2.1.4 (A:126-318) Transcription corepressor CtbP | 4e-21 | |
| d1ygya1 | 184 | c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase | 8e-21 | |
| d2naca1 | 188 | c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudom | 1e-19 | |
| d1sc6a1 | 188 | c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase | 3e-17 | |
| d1dxya1 | 199 | c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydro | 2e-10 | |
| d1qp8a1 | 181 | c.2.1.4 (A:83-263) Putative formate dehydrogenase | 8e-09 | |
| d1j4aa1 | 197 | c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lacto | 1e-07 | |
| d1mx3a2 | 133 | c.23.12.1 (A:27-125,A:319-352) Transcription corep | 2e-06 |
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Score = 99.2 bits (246), Expect = 2e-24
Identities = 54/183 (29%), Positives = 76/183 (41%), Gaps = 2/183 (1%)
Query: 119 ADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALA 178
A+ M LLLG RR + W G +PL + LGI G + +ALA
Sbjct: 6 AEIAMLLLLGSARRAGE-GEKMIRTRSWPGW-EPLELVGEKLDNKTLGIYGFGSIGQALA 63
Query: 179 TRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238
R+ F M + YFD A D+L+ LL+ S SL+ T ET N
Sbjct: 64 KRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNK 123
Query: 239 ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVL 298
++ + GA +VNT L+D+ V L G LA D G + ++PN
Sbjct: 124 ATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTF 183
Query: 299 ILP 301
+ P
Sbjct: 184 LFP 186
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Score = 89.4 bits (220), Expect = 4e-21
Identities = 64/194 (32%), Positives = 103/194 (53%), Gaps = 7/194 (3%)
Query: 116 EEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCR---GMRRCRGLVLGIVGRSA 172
EE AD+ + +L L RR AL + SV+ + G R RG LGI+G
Sbjct: 1 EETADSTLCHILNLYRRATW-LHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGR 59
Query: 173 SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDET 232
+A+A R+ +F +VL++D P V +R+ TL DLL SD ++LHC + +
Sbjct: 60 VGQAVALRAKAFGFNVLFYD-PYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHN 118
Query: 233 IQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD--GAEGPQWMEAW 290
+IN ++ ++ GAFLVNT L+D+ A+ Q L +G + G ALD +E + +
Sbjct: 119 HHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGP 178
Query: 291 VREMPNVLILPRSA 304
+++ PN++ P +A
Sbjct: 179 LKDAPNLICTPHAA 192
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 88.1 bits (217), Expect = 8e-21
Identities = 46/184 (25%), Positives = 76/184 (41%), Gaps = 7/184 (3%)
Query: 118 IADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARAL 177
A+ +ALLL R+ A +L W S + G+V A+
Sbjct: 5 AAEHALALLLAASRQIPA-ADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQ-- 61
Query: 178 ATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237
R +F V+ +D + + +L+DLLA +D IS+H T ET +I+
Sbjct: 62 --RIAAFGAYVVAYDPYVSPARAAQLGI--ELLSLDDLLARADFISVHLPKTPETAGLID 117
Query: 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNV 297
E L KPG +VN L+D+ A+ + G + LD ++ + E+ V
Sbjct: 118 KEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQV 177
Query: 298 LILP 301
++ P
Sbjct: 178 VVTP 181
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Score = 85.1 bits (209), Expect = 1e-19
Identities = 49/185 (26%), Positives = 76/185 (41%), Gaps = 4/185 (2%)
Query: 118 IADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARAL 177
+A+ V+ ++L L+R + GW ++ + +G V A+
Sbjct: 3 VAEHVVMMILSLVRNYLP-SHEWARKGGW--NIADCVSHAYDLEAMHVGTVAAGRIGLAV 59
Query: 178 ATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237
R F + + Y D V T D+ DV++L+C + ET +IN
Sbjct: 60 LRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMIN 119
Query: 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREMPN 296
E L+ K GA++VNT +L D AV + L G LAG A D P + R MP
Sbjct: 120 DETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPY 179
Query: 297 VLILP 301
+ P
Sbjct: 180 NGMTP 184
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 78.1 bits (191), Expect = 3e-17
Identities = 53/192 (27%), Positives = 79/192 (41%), Gaps = 14/192 (7%)
Query: 115 AEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASA 174
+A+ V+ LL LLR A L G RG LGI+G
Sbjct: 2 TRSVAELVIGELLLLLRGVPE-ANAKAHRGVG----NKLAAGSFEARGKKLGIIGYGHIG 56
Query: 175 RALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQ 234
L + S M V ++D+ A ++ L+DLL SDV+SLH T
Sbjct: 57 TQLGILAESLGMYVYFYDIENKLPL----GNATQVQHLSDLLNMSDVVSLHVPENPSTKN 112
Query: 235 IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD-----GAEGPQWMEA 289
++ A+ + +KPG+ L+N ++D A+ L LAG A+D A +
Sbjct: 113 MMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTS 172
Query: 290 WVREMPNVLILP 301
+ E NVL+ P
Sbjct: 173 PLAEFDNVLLTP 184
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Score = 58.3 bits (139), Expect = 2e-10
Identities = 45/205 (21%), Positives = 71/205 (34%), Gaps = 26/205 (12%)
Query: 118 IADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARAL 177
IA+ + L LLR + L A + + + + + + +
Sbjct: 5 IAEFALTDTLYLLRNMG-KVQAQLQAGDYEKAGTFIGKELGQQT-------VGVMGTGHI 56
Query: 178 ATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237
++ + + +L DL SDVI LH ++ IIN
Sbjct: 57 GQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIIN 116
Query: 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD----------------GA 281
+KPGA ++NT L+D A+ L G LAG +D
Sbjct: 117 EAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSF 176
Query: 282 EGPQWMEAWVREMPNVLILPRSADY 306
+ P W E MPNV++ P A Y
Sbjct: 177 KDPLWDELL--GMPNVVLSPHIAYY 199
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 181 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Score = 53.2 bits (126), Expect = 8e-09
Identities = 33/189 (17%), Positives = 66/189 (34%), Gaps = 14/189 (7%)
Query: 115 AEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASA 174
A+ +A+ +ALLL +R + + V + +G + ++G
Sbjct: 1 ADAVAEFALALLLAPYKRIIQYGE-KMKRGDYGRDV-----EIPLIQGEKVAVLGLGEIG 54
Query: 175 RALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQ 234
+ + V F +G R ++L + L + + T
Sbjct: 55 TRVGKILAALGAQVRGFSRTPKEGPW------RFTNSLEEALREARAAVCALPLNKHTRG 108
Query: 235 IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD--GAEGPQWMEAWVR 292
++ + L + A VN G +++LD V ++L + A D +A
Sbjct: 109 LVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFF 168
Query: 293 EMPNVLILP 301
+PNV+ P
Sbjct: 169 SLPNVVATP 177
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 197 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Score = 50.2 bits (118), Expect = 1e-07
Identities = 49/202 (24%), Positives = 78/202 (38%), Gaps = 24/202 (11%)
Query: 118 IADTVMALLLGLLRRTHLLARHALSASG-WLGSVQPLCRGMRRCRGLVLGIVGRSASARA 176
IA+ +LR+ + W ++ R R V+G+VG +
Sbjct: 4 IAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIG------REVRDQVVGVVGTGHIGQV 57
Query: 177 LATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII 236
F V+ +D+ +D+L+DL +DVISLH + +I
Sbjct: 58 FMQIMEGFGAKVITYDIFR---NPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMI 114
Query: 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD--------------GAE 282
N E + +K +VN L+D AV + L G + G A+D G E
Sbjct: 115 NDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKE 174
Query: 283 GPQWMEAWVREMPNVLILPRSA 304
P A + PNVL+ P++A
Sbjct: 175 FPDARLADLIARPNVLVTPKTA 196
|
| >d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Score = 44.9 bits (106), Expect = 2e-06
Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 5/119 (4%)
Query: 19 LPSVVALNCIEDCVLEQD---SLAGVALVEHVPLGRLADGKIEAAAAVLLHSLAYLPRAA 75
+P V L+ DC +E +A VA + + + + A L++ L R
Sbjct: 1 MPLVALLDGR-DCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTRED 59
Query: 76 QRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTH 134
+ + ++I+ +GS +D A DLG+ + +V + + + R
Sbjct: 60 LEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVY-SEQASIEMREEAAREIR 117
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 620 | |||
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 100.0 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 100.0 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 100.0 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 100.0 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 100.0 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 100.0 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 100.0 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 100.0 | |
| d1ygya2 | 130 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 99.83 | |
| d1mx3a2 | 133 | Transcription corepressor CtbP {Human (Homo sapien | 99.75 | |
| d1qp8a2 | 121 | Putative formate dehydrogenase {Archaeon Pyrobacul | 99.71 | |
| d1dxya2 | 131 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 99.67 | |
| d1gdha2 | 129 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 99.65 | |
| d1sc6a2 | 132 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 99.64 | |
| d2naca2 | 186 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 99.59 | |
| d1j4aa2 | 134 | D-lactate dehydrogenase {Lactobacillus helveticus | 99.52 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 99.5 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.43 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.42 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.34 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.32 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 99.2 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.18 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 98.91 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 98.91 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 98.91 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 98.8 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 98.64 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 98.52 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 98.48 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 98.29 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 98.21 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 98.19 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 98.16 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 98.01 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 98.01 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 98.0 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 97.97 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 97.95 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 97.86 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 97.8 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.72 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 97.71 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 97.71 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 97.7 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 97.67 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 97.58 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 97.54 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 97.48 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.46 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 97.38 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 97.34 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.24 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.23 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 97.19 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.13 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 97.05 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 97.05 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 97.04 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 97.01 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 97.0 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 96.94 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 96.92 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 96.91 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 96.78 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 96.78 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 96.75 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 96.72 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 96.71 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 96.69 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 96.68 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 96.58 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.44 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 96.43 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 96.4 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 96.39 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 96.37 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.36 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 96.36 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.35 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 96.34 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 96.31 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 96.3 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 96.28 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 96.25 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 96.15 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 96.13 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 96.12 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 96.09 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 96.05 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.05 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 96.02 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 95.92 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 95.89 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 95.88 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 95.87 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 95.76 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 95.67 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 95.63 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.56 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 95.52 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.43 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 95.43 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 95.39 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 95.38 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 95.36 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.36 | |
| d1pg5a2 | 153 | Aspartate carbamoyltransferase catalytic subunit { | 95.35 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 95.34 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 95.29 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 95.26 | |
| d1dlja3 | 108 | UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD | 95.05 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 95.05 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 95.03 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 94.99 | |
| d1otha2 | 170 | Ornithine transcarbamoylase {Human (Homo sapiens) | 94.86 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 94.86 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 94.85 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 94.83 | |
| d1ml4a2 | 157 | Aspartate carbamoyltransferase catalytic subunit { | 94.77 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 94.66 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 94.58 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 94.53 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 94.52 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 94.48 | |
| d1dfca3 | 123 | Fascin {Human (Homo sapiens) [TaxId: 9606]} | 94.4 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 94.31 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.23 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 94.13 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 94.01 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 93.96 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 93.93 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 93.92 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 93.89 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 93.77 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 93.64 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 93.51 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 93.41 | |
| d2at2a2 | 151 | Aspartate carbamoyltransferase catalytic subunit { | 93.32 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 93.24 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 93.02 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 92.96 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 92.92 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 92.85 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 92.71 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 92.66 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 92.64 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 92.62 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 92.57 | |
| d1ekxa2 | 160 | Aspartate carbamoyltransferase catalytic subunit { | 92.44 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 92.43 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 92.31 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 92.3 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 92.27 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 92.24 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 92.2 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 92.17 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 92.11 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 92.09 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 92.07 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 92.02 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 91.89 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 91.83 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 91.82 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 91.79 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 91.76 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 91.68 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 91.63 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 91.5 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 91.39 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 91.28 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 91.14 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 91.13 | |
| d1dfca1 | 133 | Fascin {Human (Homo sapiens) [TaxId: 9606]} | 91.13 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 91.06 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 91.04 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 90.94 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 90.93 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 90.93 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 90.9 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 90.7 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 90.66 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 90.62 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 90.61 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 90.6 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 90.49 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 90.49 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 90.43 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 90.32 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 90.26 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 90.23 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 90.12 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 90.09 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 90.02 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 89.98 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 89.96 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 89.96 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 89.73 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 89.65 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 89.61 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 89.56 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 89.5 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 89.46 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 89.45 | |
| d1duvg2 | 183 | Ornithine transcarbamoylase {Escherichia coli [Tax | 89.28 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 89.25 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 89.18 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 89.05 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 89.03 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 89.02 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 88.97 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 88.92 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 88.76 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 88.7 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 88.68 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 88.6 | |
| d1l7da2 | 194 | Nicotinamide nucleotide transhydrogenase dI compon | 88.53 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 88.13 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 88.09 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 88.09 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 87.88 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 87.65 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 87.63 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 87.55 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 87.45 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 87.41 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 87.32 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 87.18 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 86.84 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 86.83 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 86.7 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 86.57 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 86.36 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 86.23 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 86.22 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 85.77 | |
| d2h1qa1 | 251 | Hypothetical protein Dhaf_3308 {Desulfitobacterium | 85.76 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 85.72 | |
| d1hcda_ | 118 | Histidine-rich actin-binding protein (hisactophili | 85.63 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 85.43 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 85.36 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 85.34 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 85.21 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 84.97 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 84.97 | |
| d1hcda_ | 118 | Histidine-rich actin-binding protein (hisactophili | 84.94 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 84.86 | |
| d1tuga1 | 310 | Aspartate carbamoyltransferase catalytic subunit { | 84.8 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 84.62 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 84.45 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 84.04 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 83.96 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 83.72 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 83.48 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 83.37 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 83.36 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 82.93 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 82.9 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 82.73 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 82.64 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 82.41 | |
| d1pjca2 | 193 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 81.61 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 81.46 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 81.42 | |
| d1rm4a1 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 81.07 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 81.0 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 80.81 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 80.76 | |
| d1dssg1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 80.72 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 80.71 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 80.67 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 80.53 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 80.41 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 80.16 | |
| d1js1x2 | 161 | Transcarbamylase-like protein {Bacteroides fragili | 80.05 |
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=4.1e-47 Score=366.79 Aligned_cols=184 Identities=26% Similarity=0.357 Sum_probs=165.3
Q ss_pred ChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECC
Q 007040 114 RAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDV 193 (620)
Q Consensus 114 ~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr 193 (620)
|+.+||||++++||++.|+++.++.. .+++.|.... ....++.|+++||||+|+||+.+|+++++|||+|++||+
T Consensus 1 N~~sVAE~~~~liL~~~R~i~~~~~~-~~~~~W~~~~----~~~~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~ 75 (184)
T d1ygya1 1 NIHSAAEHALALLLAASRQIPAADAS-LREHTWKRSS----FSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDP 75 (184)
T ss_dssp SHHHHHHHHHHHHHHHHTTHHHHHHH-HHTTCCCGGG----CCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECT
T ss_pred CchHHHHHHHHHHHHHHcCHHHHHHH-HHhCCCCccc----cccccccceeeeeccccchhHHHHHHhhhccceEEeecC
Confidence 67899999999999999999999887 5889997532 234679999999999999999999999999999999999
Q ss_pred CCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCc
Q 007040 194 PEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTL 273 (620)
Q Consensus 194 ~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I 273 (620)
+..... ....+ ....++++++++||+|++|||+|++|++|||++.|++||+|++|||+|||++||++||+++|++|+|
T Consensus 76 ~~~~~~-~~~~~-~~~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~i 153 (184)
T d1ygya1 76 YVSPAR-AAQLG-IELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHV 153 (184)
T ss_dssp TSCHHH-HHHHT-CEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSE
T ss_pred CCChhH-HhhcC-ceeccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhcCcE
Confidence 874432 12222 2356899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEeecCCCCCCCCccccCCCcEEEcCCCC
Q 007040 274 AGCALDGAEGPQWMEAWVREMPNVLILPRSA 304 (620)
Q Consensus 274 ~GAaLDV~E~P~~~~spL~~~pNVIlTPHiA 304 (620)
.||+||||++||.+++|||++|||++|||+|
T Consensus 154 ~~a~lDV~~~EP~~~~~l~~~~nviiTPHIG 184 (184)
T d1ygya1 154 RAAGLDVFATEPCTDSPLFELAQVVVTPHLG 184 (184)
T ss_dssp EEEEESSCSSSSCSCCGGGGCTTEEECSSCS
T ss_pred eEEEEeCCCCCCCCCchHhcCCCEEECCCCC
Confidence 9999999998666799999999999999997
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=100.00 E-value=1.2e-46 Score=365.88 Aligned_cols=190 Identities=28% Similarity=0.376 Sum_probs=169.9
Q ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCC
Q 007040 115 AEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVP 194 (620)
Q Consensus 115 a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~ 194 (620)
+.+||||+|+|||+++|+++.+++. ++++.|.+.. +.....++++|+++||||+|+||+.+|+++++|||+|++||++
T Consensus 2 t~AvAE~ai~liL~~~R~i~~~~~~-~r~g~w~~~~-~~~~~~~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~ 79 (191)
T d1gdha1 2 TVATAEIAMLLLLGSARRAGEGEKM-IRTRSWPGWE-PLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTH 79 (191)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHH-HHTTCCCCCC-TTTTCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSS
T ss_pred CHHHHHHHHHHHHHHHhCHHHHHHH-HHcCCCCcCC-ccccccceecccceEEeecccchHHHHHHHHhhcccccccccc
Confidence 4689999999999999999999987 5889996532 2223457899999999999999999999999999999999998
Q ss_pred CCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 195 EGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 195 ~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
...............++|++++++||+|++|||+|++|++|||++.|+.||+|++|||+|||++||++||+++|++|+|.
T Consensus 80 ~~~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g~i~ 159 (191)
T d1gdha1 80 RASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLA 159 (191)
T ss_dssp CCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred ccccchhhcccccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhhHHHHHHHHcCCce
Confidence 75444333334556679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEeecCCCCCCCCccccCCCcEEEcCCCCCC
Q 007040 275 GCALDGAEGPQWMEAWVREMPNVLILPRSADY 306 (620)
Q Consensus 275 GAaLDV~E~P~~~~spL~~~pNVIlTPHiAg~ 306 (620)
||+||||++||+.++|||++|||++|||+|+.
T Consensus 160 ~a~lDV~~~EP~~~~~l~~~~nvi~TPHiasa 191 (191)
T d1gdha1 160 YAGFDVFAGEPNINEGYYDLPNTFLFPHIGSA 191 (191)
T ss_dssp EEEESCCTTTTSCCTTGGGCTTEEECSSCTTC
T ss_pred EEEEECCCCCCCCCchHHcCCCEEECCccccC
Confidence 99999999877889999999999999999974
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=100.00 E-value=5.1e-46 Score=362.15 Aligned_cols=188 Identities=34% Similarity=0.541 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCC---CCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEEC
Q 007040 116 EEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQ---PLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFD 192 (620)
Q Consensus 116 ~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~---~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~d 192 (620)
++||||++++||+++|+++.+++. .+++.|.+... .....+.+|+|++|||||+|+||+.+|++|++|||+|++||
T Consensus 1 e~VAE~ai~liL~l~R~i~~~~~~-~~~g~w~~~~~~~~~~~~~~~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d 79 (193)
T d1mx3a1 1 EETADSTLCHILNLYRRATWLHQA-LREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYD 79 (193)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHH-HHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEC
T ss_pred CcHHHHHHHHHHHHHhCHHHHHHH-HHcCCcccccccccccccCceeeeCceEEEeccccccccceeeeeccccceeecc
Confidence 589999999999999999999886 68999975421 11234578999999999999999999999999999999999
Q ss_pred CCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCC
Q 007040 193 VPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGT 272 (620)
Q Consensus 193 r~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~ 272 (620)
++..... ....+.....+|+++++.||+|++|||+|++|++|||.+.|++||+|++|||+|||++||++||+++|++|+
T Consensus 80 ~~~~~~~-~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~ 158 (193)
T d1mx3a1 80 PYLSDGV-ERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGR 158 (193)
T ss_dssp TTSCTTH-HHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTS
T ss_pred Ccccccc-hhhhccccccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHHcCC
Confidence 9875432 222355667899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEeecCCC-CCC-CCccccCCCcEEEcCCCCC
Q 007040 273 LAGCALDGAEG-PQW-MEAWVREMPNVLILPRSAD 305 (620)
Q Consensus 273 I~GAaLDV~E~-P~~-~~spL~~~pNVIlTPHiAg 305 (620)
|.||+||||++ |++ .++||+++|||++|||+||
T Consensus 159 i~~a~lDV~~~EP~~~~~~~l~~~~nvi~TPHiA~ 193 (193)
T d1mx3a1 159 IRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAW 193 (193)
T ss_dssp EEEEEESCCSSSSCCTTSSTTTTCSSEEECSSCTT
T ss_pred ceEEEEEcCCCCCCCCCchhHHcCCCEEEcCCcCc
Confidence 99999999997 434 4789999999999999997
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=100.00 E-value=1.4e-45 Score=360.24 Aligned_cols=184 Identities=27% Similarity=0.328 Sum_probs=162.5
Q ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCC
Q 007040 115 AEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVP 194 (620)
Q Consensus 115 a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~ 194 (620)
.++||||++++||+++|+++.++.. .+++.|..... ...++|.|++|||||+|+||+.+|++|++|||+|++||++
T Consensus 2 p~aVAE~~l~~iL~l~R~~~~~~~~-~~~g~w~~~~~---~~~~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~ 77 (199)
T d1dxya1 2 PAAIAEFALTDTLYLLRNMGKVQAQ-LQAGDYEKAGT---FIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPY 77 (199)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHH-HHTTCHHHHTC---CCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred ChHHHHHHHHHHHHHHhCHHHHHHH-HHhCCCCcccC---cccccccceeeeeeecccccccccccccccceeeeccCCc
Confidence 4689999999999999999999887 58899964321 2246899999999999999999999999999999999998
Q ss_pred CCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 195 EGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 195 ~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
...... ......+++++++.||+|++|||+|++|++|||++.|++||+|++|||+|||++||++||+++|++|+|.
T Consensus 78 ~~~~~~----~~~~~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g~i~ 153 (199)
T d1dxya1 78 PMKGDH----PDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLA 153 (199)
T ss_dssp CCSSCC----TTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEE
T ss_pred cchhhh----cchhHHHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccHhhhhhHHHHHHHhcCCcc
Confidence 754321 1223468999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEeecCCCCC--------------CCCccccCCCcEEEcCCCCCC
Q 007040 275 GCALDGAEGPQ--------------WMEAWVREMPNVLILPRSADY 306 (620)
Q Consensus 275 GAaLDV~E~P~--------------~~~spL~~~pNVIlTPHiAg~ 306 (620)
||+||||++|| |..++|+.+|||++|||+|||
T Consensus 154 ga~lDV~~~EP~~~~~~~~~~~~~~p~~~~L~~~~nviiTPHiagy 199 (199)
T d1dxya1 154 GVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYY 199 (199)
T ss_dssp EEEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTC
T ss_pred eEeccccCCCCcchhhccccccccChhhHHHhcCCCEEECCccccC
Confidence 99999999744 223578899999999999997
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=100.00 E-value=1.6e-45 Score=356.09 Aligned_cols=186 Identities=26% Similarity=0.305 Sum_probs=166.7
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 117 EIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 117 aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
+||||+|+++|+++|+++.++.. .+++.|.... .....++|.|++|||||+|+||+.+|++|++|||+|++||+...
T Consensus 2 sVAE~~l~~iL~~~R~~~~~~~~-~~~g~w~~~~--~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~ 78 (188)
T d2naca1 2 SVAEHVVMMILSLVRNYLPSHEW-ARKGGWNIAD--CVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRL 78 (188)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHH-HHTTCCCHHH--HHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCC
T ss_pred cHHHHHHHHHHHHHhCHHHHHHH-HHhCCCCCcc--cCCcceeccccceeeccccccchhhhhhhhccCceEEEEeeccc
Confidence 79999999999999999988887 5789996421 11234679999999999999999999999999999999999865
Q ss_pred CCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCccee
Q 007040 197 KGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGC 276 (620)
Q Consensus 197 ~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GA 276 (620)
........+.....+|++++++||+|++|||+|++|++|||++.|++||+|++|||+|||++||++||+++|++|++.||
T Consensus 79 ~~~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i~ga 158 (188)
T d2naca1 79 PESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGY 158 (188)
T ss_dssp CHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEE
T ss_pred cccccccccccccCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCCceeE
Confidence 44333333456678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCC-CCCCCccccCCCcEEEcCCCCC
Q 007040 277 ALDGAEG-PQWMEAWVREMPNVLILPRSAD 305 (620)
Q Consensus 277 aLDV~E~-P~~~~spL~~~pNVIlTPHiAg 305 (620)
+||||++ |++.++|||++|||++|||+||
T Consensus 159 ~lDV~~~EP~~~~~~l~~~~nv~~TPHiaG 188 (188)
T d2naca1 159 AGDVWFPQPAPKDHPWRTMPYNGMTPHISG 188 (188)
T ss_dssp EESCCSSSSCCTTCGGGTSTTBCCCCSCTT
T ss_pred EEeCCCCCCCCCCChHHcCCCeEEccccCc
Confidence 9999986 7778999999999999999997
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=100.00 E-value=7.5e-45 Score=350.49 Aligned_cols=179 Identities=20% Similarity=0.220 Sum_probs=162.5
Q ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCC
Q 007040 115 AEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVP 194 (620)
Q Consensus 115 a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~ 194 (620)
|++||||+++++|+++|++..+... .+++.|..... ..+|.|++|||||+|+||+.+|+++++|||+|++||++
T Consensus 1 A~aVAE~~~~liL~~~R~i~~~~~~-~~~~~w~~~~~-----~~~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~ 74 (181)
T d1qp8a1 1 ADAVAEFALALLLAPYKRIIQYGEK-MKRGDYGRDVE-----IPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRT 74 (181)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHH-HHTTCCCCCSC-----CCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSS
T ss_pred CchHHHHHHHHHHHHHhCHHHHHHH-HHcCCCCCCCC-----CCcccCceEEEeccccccccceeeeecccccccccccc
Confidence 6899999999999999999999887 57899975432 23689999999999999999999999999999999998
Q ss_pred CCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 195 EGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 195 ~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
+.... .....+|++++++||+|++|||+|++|+++||.+.|+.||+|++|||+|||++||++||+++|++|++.
T Consensus 75 ~~~~~------~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~ 148 (181)
T d1qp8a1 75 PKEGP------WRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQF 148 (181)
T ss_dssp CCCSS------SCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTC
T ss_pred ccccc------eeeeechhhhhhccchhhcccccccccccccccceeeeccccceEEeccccccccchhhhhhcccCcEE
Confidence 75432 223468999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEeecCCC--CCCCCccccCCCcEEEcCCCCC
Q 007040 275 GCALDGAEG--PQWMEAWVREMPNVLILPRSAD 305 (620)
Q Consensus 275 GAaLDV~E~--P~~~~spL~~~pNVIlTPHiAg 305 (620)
||++|||++ |.+.++||+++|||++|||+||
T Consensus 149 ~aalDV~~~e~p~~~~~~l~~~~nvi~TPHiaG 181 (181)
T d1qp8a1 149 IFASDVWWGRNDFAKDAEFFSLPNVVATPWVAG 181 (181)
T ss_dssp EEEESCCTTTTCCGGGHHHHTSTTEEECCSCSS
T ss_pred EEEEecCCCCCCCCCCChHHcCCCEEeccccCc
Confidence 999999964 5567889999999999999997
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.3e-44 Score=349.88 Aligned_cols=183 Identities=27% Similarity=0.344 Sum_probs=159.3
Q ss_pred ChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECC
Q 007040 114 RAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDV 193 (620)
Q Consensus 114 ~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr 193 (620)
|+++||||+|+++|+++|+++.++.. .+++.|.... ...+++.|++|||||+|.||+.+|+++.+|||+|++||+
T Consensus 1 Na~aVAE~~l~~il~l~R~~~~~~~~-~~~~~w~~~~----~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~ 75 (188)
T d1sc6a1 1 NTRSVAELVIGELLLLLRGVPEANAK-AHRGVGNKLA----AGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDI 75 (188)
T ss_dssp THHHHHHHHHHHHHHHHHTHHHHHHH-HHHTCCC---------CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCHHHHHHHHHHHHHHHhChHHHHHH-HHhCCCcccc----cccccccceEEEEeecccchhhhhhhcccccceEeeccc
Confidence 68999999999999999999998886 5788997542 223579999999999999999999999999999999998
Q ss_pred CCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCc
Q 007040 194 PEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTL 273 (620)
Q Consensus 194 ~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I 273 (620)
...... .......+|+++++.||+|++|||+|++|++|||++.|+.||+|++|||+|||++||++||+++|++|++
T Consensus 76 ~~~~~~----~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~~ 151 (188)
T d1sc6a1 76 ENKLPL----GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHL 151 (188)
T ss_dssp SCCCCC----TTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSE
T ss_pred cccchh----hhhhhhhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCCc
Confidence 764332 2334557999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEeecCCCC-C----CCCccccCCCcEEEcCCCCC
Q 007040 274 AGCALDGAEGP-Q----WMEAWVREMPNVLILPRSAD 305 (620)
Q Consensus 274 ~GAaLDV~E~P-~----~~~spL~~~pNVIlTPHiAg 305 (620)
.||+||||++| . +..+||+++|||++|||+||
T Consensus 152 ~~a~lDV~~~EP~~~~~~~~~~l~~~~nv~~TPHiaG 188 (188)
T d1sc6a1 152 AGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGG 188 (188)
T ss_dssp EEEEEEC---------CTTTGGGTTCTTEEEECCCSC
T ss_pred eEEEEecCCCCCCCcCCccchhHhcCCCEEEcCCcCc
Confidence 99999999974 3 45679999999999999997
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=100.00 E-value=3.2e-44 Score=350.50 Aligned_cols=182 Identities=26% Similarity=0.330 Sum_probs=158.9
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 116 EEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 116 ~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
++||||+++++|+++|+++.+++. ++++.|.... ..+++|.|++|||||+|+||+.+|++|++|||+|++||++.
T Consensus 2 ~aVAE~~l~~~l~l~r~~~~~~~~-~~~~~~~w~~----~~g~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~ 76 (197)
T d1j4aa1 2 NAIAEHAAIQAARILRQDKAMDEK-VARHDLRWAP----TIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFR 76 (197)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHH-HHTTBCCCTT----CCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CHHHHHHHHHHHHHHhCcHHHHHH-HHhCCCCcCC----CcCccccCCeEEEecccccchhHHHhHhhhcccccccCccc
Confidence 689999999999999999998886 4677664321 12468999999999999999999999999999999999886
Q ss_pred CCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcce
Q 007040 196 GKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAG 275 (620)
Q Consensus 196 ~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~G 275 (620)
.... ........+|++++++||+|++|||+|++|++||+++.|+.||+|++|||+|||++||++||+++|++|+|.|
T Consensus 77 ~~~~---~~~~~~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~ 153 (197)
T d1j4aa1 77 NPEL---EKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFG 153 (197)
T ss_dssp CHHH---HHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEE
T ss_pred cccc---ccceeeeccccccccccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHhcccchh
Confidence 4322 1223345789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeecCCCCCC--------------CCccccCCCcEEEcCCCCC
Q 007040 276 CALDGAEGPQW--------------MEAWVREMPNVLILPRSAD 305 (620)
Q Consensus 276 AaLDV~E~P~~--------------~~spL~~~pNVIlTPHiAg 305 (620)
|+||||++||. ..+|||.+||||+|||+||
T Consensus 154 a~lDV~~~Ep~~~~~~~~~~~~p~~~~~~L~~~~nviiTPHiA~ 197 (197)
T d1j4aa1 154 YAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAF 197 (197)
T ss_dssp EEESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTT
T ss_pred eeeeccccCCcccccccccccCCccchhhhhcCCCEEeCcccCc
Confidence 99999986431 2357999999999999996
|
| >d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.83 E-value=5.1e-21 Score=173.86 Aligned_cols=126 Identities=16% Similarity=0.095 Sum_probs=104.3
Q ss_pred CCCEEEEeCCCCCChhHHhhccCCceEEecCCCCCc--ccccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCCcc
Q 007040 18 PLPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLA--DGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTV 95 (620)
Q Consensus 18 ~kPkVvvL~~~ed~~~~~~~L~~l~~v~~~~~~~l~--e~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D~V 95 (620)
+||+|++.+.+.+ ...+.|+...++.+.+..... .+.++++|+++++..+++++++++++|+||+|++.|+|+|||
T Consensus 1 sMpkvli~~~~~~--~~~~~L~~~~~v~~~~~~~~~el~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~g~G~d~I 78 (130)
T d1ygya2 1 SLPVVLIADKLAP--STVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNV 78 (130)
T ss_dssp CCCEEEECSSCCG--GGGTTSCSSSEEEECCTTSHHHHHHHGGGCSEEEECSSSCBCHHHHHTCTTCCEEEESSSCCTTB
T ss_pred CCCEEEEECCCCH--HHHHHHhCCcEEEECCCCCHHHHHHHcCCCEEEEEcCcccchHHHHhhcccceEEeeecccccch
Confidence 4799999886533 335578887888877643221 246789999999888899999999999999999999999999
Q ss_pred chHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCC
Q 007040 96 DSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGW 146 (620)
Q Consensus 96 D~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W 146 (620)
|+++|+++||.|+|+|++++.+||||+++|||+++|++..+++. .+++.|
T Consensus 79 Dl~~~~~~gI~V~n~p~~~~~~VAE~~~~l~L~l~R~i~~a~~~-vr~g~~ 128 (130)
T d1ygya2 79 DVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEF-VPDAVN 128 (130)
T ss_dssp CHHHHHHTTCEEECCTTSSCBHHHHHHHHHHHHHHHHHHHTTCC-CTTBCS
T ss_pred hHHHHHHCCceEEecCCCCcHHHHHHHHHHHHHHHhhHHHHhhh-cccCcc
Confidence 99999999999999999999999999999999999998765443 344444
|
| >d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=99.75 E-value=1.4e-18 Score=158.73 Aligned_cols=124 Identities=20% Similarity=0.272 Sum_probs=105.7
Q ss_pred CCEEEEeCCCCCChhHHhhccCCceEEecCCC---CCcccccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCCcc
Q 007040 19 LPSVVALNCIEDCVLEQDSLAGVALVEHVPLG---RLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTV 95 (620)
Q Consensus 19 kPkVvvL~~~ed~~~~~~~L~~l~~v~~~~~~---~l~e~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D~V 95 (620)
+|+|++++.. +...+...|+..+++.+++.. ++.+..+.+++++++++.+++++++++++|+||+|+++|+|+|||
T Consensus 1 mP~v~~ld~~-d~~~e~~~L~~~~~v~~~~~~s~~e~~e~~~~~a~~vlv~~~~~i~~~~l~~~~~Lk~I~~~g~G~d~i 79 (133)
T d1mx3a2 1 MPLVALLDGR-DCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNI 79 (133)
T ss_dssp CCEEEESSCS-CCTTTHHHHTTTCEEEECCCSSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSCCEEEESSSCCTTB
T ss_pred CCEEEEecCC-cchhhHHHhcccceEEEecCCChHHHHHHHhccCcEEEEEeCCCcCHHHHhhCCCCeEEEEcCCCcccE
Confidence 5899999864 667778899999998887643 333445667888999988899999999999999999999999999
Q ss_pred chHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCC
Q 007040 96 DSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGS 149 (620)
Q Consensus 96 D~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~ 149 (620)
|+++|+++||.|+|+|++++ +||||+++|+|+++|++++. .+|.|.+.
T Consensus 80 D~~~~~~~gI~v~n~p~~~~-~vAE~a~~lil~~~R~i~~a-----~~g~~~~~ 127 (133)
T d1mx3a2 80 DIKSAGDLGIAVCNVPAASV-YSEQASIEMREEAAREIRRA-----ITGRIPDS 127 (133)
T ss_dssp CHHHHHHTTCEEECCCSTTH-CCHHHHHHHHHHHHHHHHHH-----HHSCTTTT
T ss_pred eeeeheeCCEEEEcCCCCCc-hhHHHHHHHHHHHHhhHHHH-----Hhccccch
Confidence 99999999999999999988 57999999999999999765 35677644
|
| >d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.71 E-value=1e-19 Score=163.61 Aligned_cols=111 Identities=10% Similarity=0.059 Sum_probs=93.8
Q ss_pred hhHHhhccCCceEEecCCCCCcccccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCCccchHHHHhcCcEEEEcC
Q 007040 32 VLEQDSLAGVALVEHVPLGRLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVD 111 (620)
Q Consensus 32 ~~~~~~L~~l~~v~~~~~~~l~e~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNtp 111 (620)
+...+.|+...++... ..++++|+++++ +++++.++++|+||||++.|+|+||+|++.++ +||.|+|++
T Consensus 11 ~e~~e~L~~~~~v~~~-------~d~~~~d~~l~~---~~~~~~l~~~~~Lk~i~~~~aG~D~i~~~~~~-~~i~v~n~~ 79 (121)
T d1qp8a2 11 PEAEEELRKYFKIVRG-------GDLGNVEAALVS---RITAEELAKMPRLKFIQVVTAGLDHLPWESIP-PHVTVAGNA 79 (121)
T ss_dssp HHHHHHHHTTCEEECS-------SCCTTBCCCCBS---CCCHHHHHHCTTCCCEEBSSSCCTTSCCTTSC-TTSCEECCC
T ss_pred HHHHHHhhhcceEeec-------ccccccceeeee---ccCHHHHhcCCCceEEEecccCcCCCCHHHhc-cCeEEEECC
Confidence 3445566665444322 246678887776 68999999999999999999999999999985 699999999
Q ss_pred CCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCC
Q 007040 112 TSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFK 185 (620)
Q Consensus 112 g~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG 185 (620)
|+++.+||||+++++|++.|+ +||+|+|.||+++|+++++||
T Consensus 80 g~~~~~vae~~~~~il~~~r~--------------------------------l~i~G~G~iG~~iA~r~~a~G 121 (121)
T d1qp8a2 80 GSNGYGNERVWRQMVMEAVRN--------------------------------LITYATGGRPRNIAKREDYIG 121 (121)
T ss_dssp SSSSSSCHHHHHHHHHHHHHH--------------------------------HHHHHTTSCCSCBCCGGGTC-
T ss_pred CCChHHHHHHHHHHHHHhcCC--------------------------------EEEEcCCHHHHHHHHHHHhcC
Confidence 999999999999999999863 579999999999999999998
|
| >d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=99.67 E-value=7.2e-17 Score=145.92 Aligned_cols=117 Identities=9% Similarity=0.024 Sum_probs=89.7
Q ss_pred EEEEeCCCCCChhHHhhc-cCC-ceEEecCC--CCCcccccccceEEEEecCCCCCHHHHhcCC--CCeEEEEecccCCc
Q 007040 21 SVVALNCIEDCVLEQDSL-AGV-ALVEHVPL--GRLADGKIEAAAAVLLHSLAYLPRAAQRRLR--PYQLILCLGSSDRT 94 (620)
Q Consensus 21 kVvvL~~~ed~~~~~~~L-~~l-~~v~~~~~--~~l~e~~l~~AdaVlv~s~~~l~~e~l~~lp--~LK~I~~~gaG~D~ 94 (620)
||++.+...+.....+.+ +.. .++...+. .+.....++++|+|++....++++++++++| +||+|++.|+|+||
T Consensus 2 KIl~~~~~~~e~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~vl~~l~~~~Lk~I~~~~vG~d~ 81 (131)
T d1dxya2 2 KIIAYGARVDEIQYFKQWAKDTGNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDN 81 (131)
T ss_dssp EEEECSCCTTTHHHHHHHHHHHCCEEEECSSCCCTTGGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSCCTT
T ss_pred EEEEEecCcCcHHHHHHHHHHcCeEEEEcCCCCCHHHHHHhcCCCEEEEecCCCCCHHHHhhcccCCeEEEEEccccccc
Confidence 466655433332222222 222 35555542 2222356788999998877899999999876 79999999999999
Q ss_pred cchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHH
Q 007040 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLA 137 (620)
Q Consensus 95 VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~ 137 (620)
||+++|+++||.|+|+|++++++||||+++++|+++|++...+
T Consensus 82 ID~~~a~~~gI~V~n~P~~~~~aVAE~~~~~~l~l~R~l~~~~ 124 (131)
T d1dxya2 82 IDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLTKGE 124 (131)
T ss_dssp BCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred ccccccccceEEEEeCCCCCchhHHHHHHHHHHHHHcchHHHH
Confidence 9999999999999999999999999999999999999976543
|
| >d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=99.65 E-value=3.8e-16 Score=141.20 Aligned_cols=110 Identities=7% Similarity=-0.067 Sum_probs=88.3
Q ss_pred CCEEEEeCCCCCChhHHhhccCCceEEecCC-CCCcc----cccccceEEEEecCCCCCHHHHhcCC-CCeEEEEecccC
Q 007040 19 LPSVVALNCIEDCVLEQDSLAGVALVEHVPL-GRLAD----GKIEAAAAVLLHSLAYLPRAAQRRLR-PYQLILCLGSSD 92 (620)
Q Consensus 19 kPkVvvL~~~ed~~~~~~~L~~l~~v~~~~~-~~l~e----~~l~~AdaVlv~s~~~l~~e~l~~lp-~LK~I~~~gaG~ 92 (620)
||+|+++.+++ +...+.|+..+++...+. ..++. +.++++|++++....++++++++++| +||+|++.|+|+
T Consensus 1 K~kVlit~~~~--~~~~~~l~~~~~v~~~~~~~~~s~~el~~~~~~~d~ii~~~~~~i~~~~l~~~~~~LK~I~~~gvG~ 78 (129)
T d1gdha2 1 KKKILITWPLP--EAAMARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGF 78 (129)
T ss_dssp CCEEEESSCCC--HHHHHHHHTTSEEEECCSTTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHSCTTCCEEEEESSCC
T ss_pred CCEEEEeCCCC--HHHHHHHHcCCcEEEeCCCCCCCHHHHHHHhcCCCEEEEcCCchhhhHHHhhhhhcceeeeecccCC
Confidence 68999987643 334557777778776543 23332 44688999998877799999999997 699999999999
Q ss_pred CccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHH
Q 007040 93 RTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLL 130 (620)
Q Consensus 93 D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~ 130 (620)
||||+++|+++||+|+|+||+++++|||+|+++|+.++
T Consensus 79 d~ID~~~a~~~gI~V~ntpg~~~~aVAE~A~~~~~l~~ 116 (129)
T d1gdha2 79 DHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLID 116 (129)
T ss_dssp TTBCHHHHHHTTCEEECCCCSBHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHhCCCEEEECCCCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999997665444444
|
| >d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=2.1e-16 Score=143.78 Aligned_cols=113 Identities=18% Similarity=0.157 Sum_probs=87.6
Q ss_pred CCCCEEEEeCCCCCChhHHhhccCC--ceEEecCCCCCc----ccccccceEEEEecCCCCCHHHHhcCCCCeEEEEecc
Q 007040 17 TPLPSVVALNCIEDCVLEQDSLAGV--ALVEHVPLGRLA----DGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGS 90 (620)
Q Consensus 17 ~~kPkVvvL~~~ed~~~~~~~L~~l--~~v~~~~~~~l~----e~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~ga 90 (620)
..|.||++++.+.+ ...+.|+.. ..+... ...++ .+.+.++|++++.+...+++++++++|+||+|+++|+
T Consensus 2 k~kmKILv~d~i~~--~a~~~L~~~g~~~v~~~-~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~i~~~p~Lk~I~~~gv 78 (132)
T d1sc6a2 2 KDKIKFLLVEGVHQ--KALESLRAAGYTNIEFH-KGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAI 78 (132)
T ss_dssp CSSCCEEECSCCCH--HHHHHHHHTTCCCEEEC-SSCCCHHHHHHHTTSCSEEEECSSCCBCHHHHHHCSSCCEEEECSS
T ss_pred CCCCEEEEECCCCH--HHHHHHHhCCCEEEEeC-CCCCCHHHHHHhhcCCcEEEEecccccChhhhhccccceeEEEecc
Confidence 35779999987633 233445443 233332 22222 2567899999988888999999999999999999999
Q ss_pred cCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhc
Q 007040 91 SDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRR 132 (620)
Q Consensus 91 G~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rr 132 (620)
|+||||+++|+++||.|+|+|++++.+||||+++||++..|+
T Consensus 79 G~D~IDl~aa~~~gI~V~ntp~~~~~svAe~~~lml~~~~~~ 120 (132)
T d1sc6a2 79 GTNQVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVAGKLIK 120 (132)
T ss_dssp CCTTBCHHHHHHTTCCEECCTTTCSHHHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHhCCCEEEECCCCchhHHHHHHHHHHHHHhhH
Confidence 999999999999999999999999999999977666544433
|
| >d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=99.59 E-value=2.8e-16 Score=149.92 Aligned_cols=113 Identities=13% Similarity=0.053 Sum_probs=89.0
Q ss_pred hHHhhccCC-ceEEecCCCC----CcccccccceEEEEec--CCCCCHHHHhcCCCCeEEEEecccCCccchHHHHhcCc
Q 007040 33 LEQDSLAGV-ALVEHVPLGR----LADGKIEAAAAVLLHS--LAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGL 105 (620)
Q Consensus 33 ~~~~~L~~l-~~v~~~~~~~----l~e~~l~~AdaVlv~s--~~~l~~e~l~~lp~LK~I~~~gaG~D~VD~~aa~erGI 105 (620)
-.++.|+.. +++...+..+ ..++.+.+||+++++. ..+++++.++++|+||+|+++|+|+||||+++|.++||
T Consensus 58 glr~~Le~~GhelV~~sd~~~~~~el~k~l~DADivI~~pf~~~~lt~e~i~~ap~LKlI~~~g~G~D~VDl~aa~e~gI 137 (186)
T d2naca2 58 GLRKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNV 137 (186)
T ss_dssp GCHHHHHHTTCEEEEESCCSSTTSHHHHHHTTCSEEEEBTTBCCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTC
T ss_pred hHHHHHHHCCCEEEEecCCCCChHHHHhhcccCCEEEEecccccccCHHHHhcCccceEEEEeccCCccccHHHHHhCCC
Confidence 335566654 4555554322 2245789999999985 46899999999999999999999999999999999999
Q ss_pred EEEEcCCCChHHHHHHH--------HHHHHHHHhccHHHHHHHHHhCCC
Q 007040 106 RLIHVDTSRAEEIADTV--------MALLLGLLRRTHLLARHALSASGW 146 (620)
Q Consensus 106 ~VtNtpg~~a~aVAE~a--------LaLiLal~Rrl~~~~~~~~~~g~W 146 (620)
.|+|+||+|+.+||||+ +++++...|+++..+.. +++|.|
T Consensus 138 ~V~n~pg~n~~SVAEha~~~~~~~~i~~il~~~r~~~~~~~~-v~~G~~ 185 (186)
T d2naca2 138 TVAEVTYCNSTTLTAQARYAAGTREILECFFEGRPIRDEYLI-VQGGAL 185 (186)
T ss_dssp EEEECTTTTHCSHHHHHHHHHHHHHHHHHHHHTCCCCGGGEE-EETTEE
T ss_pred EEEECCCcCcHHHHHHHHHHHHHHHHHHHHHhccchhhhhhh-hhcccc
Confidence 99999999999999999 77788888887654432 344444
|
| >d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=99.52 E-value=6.6e-15 Score=133.81 Aligned_cols=112 Identities=13% Similarity=0.038 Sum_probs=85.4
Q ss_pred EEEEeCCCCCCh-hHHhhccCC--ceEEecCC--CCCcccccccceEEEEecCCCCCHHHHhcCC--CCeEEEEecccCC
Q 007040 21 SVVALNCIEDCV-LEQDSLAGV--ALVEHVPL--GRLADGKIEAAAAVLLHSLAYLPRAAQRRLR--PYQLILCLGSSDR 93 (620)
Q Consensus 21 kVvvL~~~ed~~-~~~~~L~~l--~~v~~~~~--~~l~e~~l~~AdaVlv~s~~~l~~e~l~~lp--~LK~I~~~gaG~D 93 (620)
||++.+..++.. ...+.++.. .++...+. .+...+.++++|+|++....+++++++++++ +||+|++.|+|+|
T Consensus 2 KI~~f~~~~~e~~~~e~~~~~~~~v~v~~~~~~~~~e~~~~~~~~d~viv~~~~~i~~eil~~l~~~~LK~I~~~~vG~d 81 (134)
T d1j4aa2 2 KIFAYAIREDEKPFLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVD 81 (134)
T ss_dssp EEEECSCCGGGHHHHHHHHHTCTTSEEEECSSCCCTTTGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSCCT
T ss_pred eEEEEecccccHHHHHHHHHhCCCEEEEECCCCCCHHHHHHhcCCCEEEEecCCCcCHHHHhhhcccCeeEEEEccCCcC
Confidence 677776644432 223333333 34544442 1222356788999999887899999999765 6999999999999
Q ss_pred ccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHH
Q 007040 94 TVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHL 135 (620)
Q Consensus 94 ~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~ 135 (620)
|||+++|+++||.|+|+|++ +||||++++||+++|+++.
T Consensus 82 ~ID~~aa~~~gI~V~N~P~~---svae~a~~~ml~l~r~~~~ 120 (134)
T d1j4aa2 82 NIDMAKAKELGFQITNVPVY---SYTTHAVRNMVVKAFDNNL 120 (134)
T ss_dssp TBCHHHHHHTTCEEECCCCS---CCBHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHhCCeEEEECCCC---cHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999998 4899999999999998643
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=4.5e-15 Score=139.39 Aligned_cols=119 Identities=13% Similarity=0.134 Sum_probs=95.0
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
.|.||+++|+|||.||+.+|+++++|||+|++||+.+....++..++.. +.++++++..+|+|+++.. ++++|+.
T Consensus 21 ~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~-v~~~~~a~~~adivvtaTG----n~~vI~~ 95 (163)
T d1li4a1 21 MIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYE-VTTMDEACQEGNIFVTTTG----CIDIILG 95 (163)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCHHHHTTTCSEEEECSS----CSCSBCH
T ss_pred eecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceE-eeehhhhhhhccEEEecCC----CccchhH
Confidence 4899999999999999999999999999999999987544334434444 4589999999999988765 6789999
Q ss_pred HHhhccCCCcEEEEcC-CChhhcHHHHHHHHHcCCcceeEeecCC
Q 007040 239 ECLQHIKPGAFLVNTG-SSQLLDDCAVKQLLIDGTLAGCALDGAE 282 (620)
Q Consensus 239 ~~L~~MK~gAiLINvg-RG~vVDe~AL~~AL~~G~I~GAaLDV~E 282 (620)
+.|+.||+|++|.|+| +..-||.++|.+...+.......+|.|+
T Consensus 96 eh~~~MKdgaIL~N~Ghfd~EId~~~L~~~~~~~~~v~~~v~~y~ 140 (163)
T d1li4a1 96 RHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYR 140 (163)
T ss_dssp HHHTTCCTTEEEEECSSSTTSBCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHhccCCeEEEEeccccceecHHHHhhccceeeeecCCeeEEE
Confidence 9999999999999997 5666899998876443333333444443
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.43 E-value=7.3e-14 Score=129.20 Aligned_cols=116 Identities=16% Similarity=0.201 Sum_probs=101.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC--HHH
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN--AEC 240 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~--~~~ 240 (620)
++|||||+|.||..||++|...|++|++||+++...+.....+.....++.+++++||+|++|+|..+++..++. ...
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~ 80 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI 80 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcch
Confidence 579999999999999999999999999999987655544455667778999999999999999999999888762 357
Q ss_pred hhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 241 L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
+..+++|.++|+++....-....+.+.+....+. .+|.
T Consensus 81 ~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vda 118 (161)
T d1vpda2 81 IEGAKPGTVLIDMSSIAPLASREISDALKAKGVE--MLDA 118 (161)
T ss_dssp HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCE--EEEC
T ss_pred hhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--eecc
Confidence 8899999999999999999999999999988775 6665
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.42 E-value=2.5e-13 Score=125.20 Aligned_cols=143 Identities=14% Similarity=0.155 Sum_probs=103.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCc-eecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA-RRMDTLNDLLAASDVISLHCAVTDETIQIINAECL 241 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~-~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L 241 (620)
++|||||+|.||..+|+.|+..|++|++||++....+.....+. ....+..+.+++||+|++++|.. .+..++. +..
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~~-~~~~vl~-~l~ 78 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPIQ-LILPTLE-KLI 78 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCHH-HHHHHHH-HHG
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCcHh-hhhhhhh-hhh
Confidence 57999999999999999999999999999998654333333332 12234446789999999999954 6777774 567
Q ss_pred hccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCC--CCCCCccccCCCcEEEcCCCCCCcH
Q 007040 242 QHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG--PQWMEAWVREMPNVLILPRSADYSE 308 (620)
Q Consensus 242 ~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~--P~~~~spL~~~pNVIlTPHiAg~T~ 308 (620)
..+++++++++++.........+ ..+....+....+...+. |......|+....+++||+.++..+
T Consensus 79 ~~l~~~~iv~~~~s~~~~~~~~~-~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~~~ 146 (165)
T d2f1ka2 79 PHLSPTAIVTDVASVKTAIAEPA-SQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPE 146 (165)
T ss_dssp GGSCTTCEEEECCSCCHHHHHHH-HHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHH
T ss_pred hhcccccceeeccccchHHHHHH-HHhhcccccceeeecccccchhhhcccccCCCeEEEEeCCCCCHH
Confidence 88999999999987764444443 444455566566665443 3344556888888999998765543
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.34 E-value=3.1e-12 Score=117.98 Aligned_cols=147 Identities=13% Similarity=0.103 Sum_probs=109.9
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCCccccCCc--eecCCHHhh-hcCCcEEEEcccCChhhHhhcC
Q 007040 163 LVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGKVTFPSAA--RRMDTLNDL-LAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~--~V~~~dr~~~~~~~~~~~g~--~~~~sL~eL-L~~sDvVil~lPlT~~T~~lI~ 237 (620)
++|+|||+|.||.++|+.|+..|+ +|++||++....+.+...+. ....+.++. ...+|+|++++|. ..+..++
T Consensus 2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~-~~~~~vl- 79 (171)
T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPV-RTFREIA- 79 (171)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCH-HHHHHHH-
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCc-hhhhhhh-
Confidence 469999999999999999998875 89999998754433333332 223344433 3579999999994 3455555
Q ss_pred HHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCC--CCCCCccccCCCcEEEcCCCCCCcHHHHH
Q 007040 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG--PQWMEAWVREMPNVLILPRSADYSEEVWM 312 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~--P~~~~spL~~~pNVIlTPHiAg~T~ea~~ 312 (620)
.+....+++++++++++.....-.+++.+.+....+.+..+...|. |......|++..++|+|||-.. +.+.++
T Consensus 80 ~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~~-~~~~~~ 155 (171)
T d2g5ca2 80 KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKT-DKKRLK 155 (171)
T ss_dssp HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSS-CHHHHH
T ss_pred hhhhccccccccccccccccHHHHHHHHHhhcccccccccccccccccHHHHHHHhhCCCeEEEecCCCC-CHHHHH
Confidence 3566789999999999997776677777888887889999998874 5566778999999999998764 344333
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.32 E-value=1.1e-12 Score=121.31 Aligned_cols=116 Identities=16% Similarity=0.210 Sum_probs=100.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhc--CHHH
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII--NAEC 240 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI--~~~~ 240 (620)
++|||||+|.||.+||++|...|++|.+||++..........+.....++.+++..+|+|++++|..+..+.++ ....
T Consensus 2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~~ 81 (162)
T d3cuma2 2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL 81 (162)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTCH
T ss_pred CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhccccc
Confidence 47999999999999999999999999999998765444444566667889999999999999999998888776 3457
Q ss_pred hhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 241 L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
+..+++|.++||++....-....+.+.+.+..+. .+|.
T Consensus 82 ~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~--~~da 119 (162)
T d3cuma2 82 LAHIAPGTLVLECSTIAPTSARKIHAAARERGLA--MLDA 119 (162)
T ss_dssp HHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEC
T ss_pred cccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCc--EEec
Confidence 8889999999999999999999999999988775 6776
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=99.20 E-value=7.4e-12 Score=117.03 Aligned_cols=102 Identities=15% Similarity=0.128 Sum_probs=86.6
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
-+.||++.|+|||.+|+.+|++|+++|++|++++..+-...++..+|... .+++++++.+|+|+.+... .++|+.
T Consensus 20 ~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v-~~~~~a~~~aDi~vTaTGn----~~vI~~ 94 (163)
T d1v8ba1 20 LISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNV-VTLDEIVDKGDFFITCTGN----VDVIKL 94 (163)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECCSS----SSSBCH
T ss_pred eecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCCcc-CchhHccccCcEEEEcCCC----CccccH
Confidence 37999999999999999999999999999999998875444444455444 6999999999999999884 469999
Q ss_pred HHhhccCCCcEEEEcCCChh-hcHHHHH
Q 007040 239 ECLQHIKPGAFLVNTGSSQL-LDDCAVK 265 (620)
Q Consensus 239 ~~L~~MK~gAiLINvgRG~v-VDe~AL~ 265 (620)
++|..||+|+||.|+|.... +|-++|.
T Consensus 95 ~h~~~MKdgaIl~N~GHfd~EIdv~~L~ 122 (163)
T d1v8ba1 95 EHLLKMKNNAVVGNIGHFDDEIQVNELF 122 (163)
T ss_dssp HHHTTCCTTCEEEECSSTTTSBCHHHHH
T ss_pred HHHHHhhCCeEEEeccccchhhhhHHHH
Confidence 99999999999999998765 5555554
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.18 E-value=1.1e-11 Score=115.93 Aligned_cols=116 Identities=14% Similarity=0.143 Sum_probs=95.4
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc--------CCceecCCHHhhhcCCcEEEEcccCChhhH
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP--------SAARRMDTLNDLLAASDVISLHCAVTDETI 233 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~--------~g~~~~~sL~eLL~~sDvVil~lPlT~~T~ 233 (620)
..+|||||+|.||.+||++|...|++|++||+++...+.... .+.....++.+++..+|++++++|..+.+.
T Consensus 2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~ 81 (176)
T d2pgda2 2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVD 81 (176)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHH
T ss_pred CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHH
Confidence 357999999999999999999999999999998754331111 122334567788889999999999998888
Q ss_pred hhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 234 QIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
.++ ...+..+++|.++||++....-+...+.+.+....+. .||.
T Consensus 82 ~v~-~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~--~lda 125 (176)
T d2pgda2 82 NFI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGIL--FVGS 125 (176)
T ss_dssp HHH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEE
T ss_pred HHH-HHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCc--eecc
Confidence 876 4688899999999999999999999999999887765 6675
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=98.91 E-value=2.3e-09 Score=96.99 Aligned_cols=120 Identities=13% Similarity=0.060 Sum_probs=87.0
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHH
Q 007040 161 RGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAE 239 (620)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~ 239 (620)
.-++|+||| +|.||+.||++|+..|++|.+||+... ...++.+..+|++++++|.. .+.. +-.+
T Consensus 8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~-------------~~~~~~~~~~~~v~~~~~~~-~~~~-v~~~ 72 (152)
T d2pv7a2 8 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW-------------AVAESILANADVVIVSVPIN-LTLE-TIER 72 (152)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG-------------GGHHHHHTTCSEEEECSCGG-GHHH-HHHH
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc-------------cccchhhhhccccccccchh-hhee-eeec
Confidence 456899999 999999999999999999999998752 23567788999999999954 3333 3456
Q ss_pred HhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEEEcC
Q 007040 240 CLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILP 301 (620)
Q Consensus 240 ~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVIlTP 301 (620)
.+..+++++++|+++.-...-.+++.+.+....+.++.+..-+... ..-.+++++|
T Consensus 73 ~~~~~~~~~iiiD~~Svk~~~~~~~~~~~~~~~v~~hP~~Gp~~~~------~~g~~~v~~~ 128 (152)
T d2pv7a2 73 LKPYLTENMLLADLTSVKREPLAKMLEVHTGAVLGLHPMFGADIAS------MAKQVVVRCD 128 (152)
T ss_dssp HGGGCCTTSEEEECCSCCHHHHHHHHHHCSSEEEEEEECSCTTCSC------CTTCEEEEEE
T ss_pred ccccccCCceEEEecccCHHHHHHHHHHccCCEEEecccCCCcccc------cCCcEEEEec
Confidence 7889999999999998766555566655544434444444433211 1234677776
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.91 E-value=3.6e-10 Score=102.82 Aligned_cols=110 Identities=14% Similarity=0.071 Sum_probs=81.9
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQ 242 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~ 242 (620)
++|||||+|.||+.+|+.|...|++|++||+...........+.....++.+++..||+|++++|..... ..+. ....
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~~~-~~~~-~~~~ 78 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVAL-GAAR-RAGR 78 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGHH-HHHH-HHHT
T ss_pred CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCchHH-HHHH-hhcc
Confidence 5799999999999999999999999999998775444333334444568999999999999999975433 3321 1222
Q ss_pred ccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 243 HIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 243 ~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
..+.++|+++.........+.+.+++.. .+|+
T Consensus 79 --~~~~~~id~st~~p~~~~~l~~~~~~~~----~~d~ 110 (152)
T d1i36a2 79 --HVRGIYVDINNISPETVRMASSLIEKGG----FVDA 110 (152)
T ss_dssp --TCCSEEEECSCCCHHHHHHHHHHCSSSE----EEEE
T ss_pred --cCCceeeccCcCCHHHHHHHHHHHhccC----CCcc
Confidence 2367899999988877788888776532 4565
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=98.91 E-value=6.2e-10 Score=101.78 Aligned_cols=112 Identities=13% Similarity=0.113 Sum_probs=87.2
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhc
Q 007040 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQH 243 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~ 243 (620)
+|||||+|.||..||++|...|+.|+ |++...........+.... ...+.+.++|++++++|..++..... ...+..
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~g~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~v~~~~-~~l~~~ 78 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARRFPTLV-WNRTFEKALRHQEEFGSEA-VPLERVAEARVIFTCLPTTREVYEVA-EALYPY 78 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTTSCEEE-ECSSTHHHHHHHHHHCCEE-CCGGGGGGCSEEEECCSSHHHHHHHH-HHHTTT
T ss_pred eEEEEeHHHHHHHHHHHHHhCCCEEE-EeCCHHHHHHHHHHcCCcc-cccccccceeEEEecccchhhhhhhh-cccccc
Confidence 59999999999999999999888765 5555433322222222233 34466678999999999888777665 468899
Q ss_pred cCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 244 IKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 244 MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
++++.++||++....-....+.+.+++..+. .||.
T Consensus 79 ~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~--~lda 113 (156)
T d2cvza2 79 LREGTYWVDATSGEPEASRRLAERLREKGVT--YLDA 113 (156)
T ss_dssp CCTTEEEEECSCCCHHHHHHHHHHHHTTTEE--EEEC
T ss_pred ccccccccccccCCHHHHHHHHHHHHHcCCe--EEec
Confidence 9999999999999999999999999987775 6776
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=98.80 E-value=2.3e-09 Score=99.44 Aligned_cols=115 Identities=19% Similarity=0.196 Sum_probs=89.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccC--------CceecCC---HHhhhcCCcEEEEcccCChh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPS--------AARRMDT---LNDLLAASDVISLHCAVTDE 231 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~--------g~~~~~s---L~eLL~~sDvVil~lPlT~~ 231 (620)
++|||||+|.||.+||++|...|++|++||+++......... ......+ +-..+..++.++.+++....
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA 81 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch
Confidence 579999999999999999999999999999976433211111 1112223 34456788999999998887
Q ss_pred hHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 232 TIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 232 T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
....++ ..+..++++.++||++....-+...+.+.|....+. .||.
T Consensus 82 ~~~~~~-~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~--~lda 127 (178)
T d1pgja2 82 TDSTIE-QLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLR--FLGM 127 (178)
T ss_dssp HHHHHH-HHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCE--EEEE
T ss_pred hhhhhh-hhhhhccccceecccCccchhHHHHHHHHHhhccee--Eecc
Confidence 777764 567889999999999999999999999999887775 5664
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.64 E-value=1.2e-08 Score=93.12 Aligned_cols=100 Identities=12% Similarity=0.112 Sum_probs=77.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-ccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT-FPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECL 241 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~-~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L 241 (620)
++|||||+|+||+++|+.|...|.+|++|+++....... ...+.....+.++++..||+|+++++ |+.. .+.+
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavk--p~~~----~~vl 74 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK--PQLF----ETVL 74 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC--GGGH----HHHH
T ss_pred CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeecc--hHhH----HHHh
Confidence 579999999999999999999999999999986443321 12355666789999999999999997 3221 4567
Q ss_pred hccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 242 QHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 242 ~~MK~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
+.++++.++|++.-| +..+.|.+.|..
T Consensus 75 ~~l~~~~~iis~~ag--i~~~~l~~~l~~ 101 (152)
T d2ahra2 75 KPLHFKQPIISMAAG--ISLQRLATFVGQ 101 (152)
T ss_dssp TTSCCCSCEEECCTT--CCHHHHHHHHCT
T ss_pred hhcccceeEeccccc--ccHHHHHhhhcc
Confidence 889999999999877 455666666643
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=98.52 E-value=1.3e-07 Score=86.29 Aligned_cols=108 Identities=15% Similarity=0.137 Sum_probs=76.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc---------------cccCCceecCCHHhhhcCCcEEEEccc
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV---------------TFPSAARRMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~---------------~~~~g~~~~~sL~eLL~~sDvVil~lP 227 (620)
+|++|||.|.||..+|..|...|++|.+|++++...+. ..........++.+.++.+|+|++++|
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v~ 81 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVP 81 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSC
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEEc
Confidence 78999999999999999999999999999997532110 001112234678999999999999999
Q ss_pred CChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCc
Q 007040 228 VTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTL 273 (620)
Q Consensus 228 lT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I 273 (620)
.. .+..++ .+...+++++.++|-+ -|.......+.+.+.....
T Consensus 82 ~~-~~~~~~-~~i~~~l~~~~~iv~~-~g~~~~~~~~~~~~~~~~~ 124 (184)
T d1bg6a2 82 AI-HHASIA-ANIASYISEGQLIILN-PGATGGALEFRKILRENGA 124 (184)
T ss_dssp GG-GHHHHH-HHHGGGCCTTCEEEES-SCCSSHHHHHHHHHHHTTC
T ss_pred hh-HHHHHH-HHhhhccCCCCEEEEe-CCCCccHHHHHHHHHHhcC
Confidence 44 444444 3456788999988854 3433444456666665544
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=98.48 E-value=7.3e-09 Score=93.44 Aligned_cols=89 Identities=12% Similarity=0.005 Sum_probs=60.9
Q ss_pred EEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhcc
Q 007040 165 LGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHI 244 (620)
Q Consensus 165 VGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~M 244 (620)
|||||+|+||+.||+.|+.-+.-+.+|+|+..........+.....++.+++..+|+|++++|.. ... +.+..+
T Consensus 2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d~-~i~-----~v~~~l 75 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDR-YIK-----TVANHL 75 (153)
T ss_dssp CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTT-THH-----HHHTTT
T ss_pred EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEeccch-hhh-----HHHhhh
Confidence 79999999999999999874444568999876544333334444568889999999999999954 332 344555
Q ss_pred -CCCcEEEEcCCChhh
Q 007040 245 -KPGAFLVNTGSSQLL 259 (620)
Q Consensus 245 -K~gAiLINvgRG~vV 259 (620)
+++.++|+++.+.-.
T Consensus 76 ~~~~~ivi~~s~~~~~ 91 (153)
T d2i76a2 76 NLGDAVLVHCSGFLSS 91 (153)
T ss_dssp CCSSCCEEECCSSSCG
T ss_pred cccceeeeecccchhh
Confidence 479999999876543
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=98.29 E-value=2.8e-07 Score=86.08 Aligned_cols=97 Identities=14% Similarity=0.214 Sum_probs=75.7
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC---ccccCCce----ecCCHHhhhcCCcEEEEcccC-Ch
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK---VTFPSAAR----RMDTLNDLLAASDVISLHCAV-TD 230 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~---~~~~~g~~----~~~sL~eLL~~sDvVil~lPl-T~ 230 (620)
.+...++.|||.|..|..-++.++++|..|.+||.+....+ ..+..... ....+.+.+++||+||.++-. ..
T Consensus 29 gv~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~ 108 (168)
T d1pjca1 29 GVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGR 108 (168)
T ss_dssp TBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred CCCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCc
Confidence 46778999999999999999999999999999998864332 11111111 223578899999999987643 33
Q ss_pred hhHhhcCHHHhhccCCCcEEEEcCC
Q 007040 231 ETIQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 231 ~T~~lI~~~~L~~MK~gAiLINvgR 255 (620)
.+-.+|.++.++.||||+++||++-
T Consensus 109 ~aP~lIt~~mv~~Mk~GSVIVDvai 133 (168)
T d1pjca1 109 RAPILVPASLVEQMRTGSVIVDVAV 133 (168)
T ss_dssp SCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred ccCeeecHHHHhhcCCCcEEEEeec
Confidence 4567999999999999999999964
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=98.21 E-value=1.8e-07 Score=84.70 Aligned_cols=97 Identities=15% Similarity=0.141 Sum_probs=68.3
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC-CEEEEECCCCCCCCccc-cCCceecCCHHhhhcCCcEEEEcccCChh-hHhhcCHH
Q 007040 163 LVLGIVGRSASARALATRSLSFK-MSVLYFDVPEGKGKVTF-PSAARRMDTLNDLLAASDVISLHCAVTDE-TIQIINAE 239 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG-~~V~~~dr~~~~~~~~~-~~g~~~~~sL~eLL~~sDvVil~lPlT~~-T~~lI~~~ 239 (620)
++|||||+|+||++||+.|...| .+|++|||+....+... ..++....+.++ +.++|+|+++++ |. ...
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~-v~~~Div~lavk--P~~~~~----- 72 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPE-LHSDDVLILAVK--PQDMEA----- 72 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCC-CCTTSEEEECSC--HHHHHH-----
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhccccccccccc-ccccceEEEecC--HHHHHH-----
Confidence 57999999999999999877556 89999999875443222 235566666665 568999999997 33 222
Q ss_pred Hhhcc-CCCcEEEEcCCChhhcHHHHHHHHH
Q 007040 240 CLQHI-KPGAFLVNTGSSQLLDDCAVKQLLI 269 (620)
Q Consensus 240 ~L~~M-K~gAiLINvgRG~vVDe~AL~~AL~ 269 (620)
.+..+ +.+.++|++.-|- ..+.|.+.|.
T Consensus 73 v~~~l~~~~~~viS~~ag~--~~~~l~~~l~ 101 (152)
T d1yqga2 73 ACKNIRTNGALVLSVAAGL--SVGTLSRYLG 101 (152)
T ss_dssp HHTTCCCTTCEEEECCTTC--CHHHHHHHTT
T ss_pred hHHHHhhcccEEeecccCC--CHHHHHHHhC
Confidence 23333 3478999988775 4455666653
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=98.19 E-value=1.9e-06 Score=81.29 Aligned_cols=96 Identities=11% Similarity=0.179 Sum_probs=71.5
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCce-----------------------------ec
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR-----------------------------RM 209 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~-----------------------------~~ 209 (620)
.+..-+|.|||.|..|..-++.++++|..|.+||.+....+.....+.. ..
T Consensus 26 ~V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~ 105 (183)
T d1l7da1 26 TVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA 105 (183)
T ss_dssp EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHH
T ss_pred CcCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHH
Confidence 4566799999999999999999999999999999887543311111110 01
Q ss_pred CCHHhhhcCCcEEEEcccCC-hhhHhhcCHHHhhccCCCcEEEEcC
Q 007040 210 DTLNDLLAASDVISLHCAVT-DETIQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 210 ~sL~eLL~~sDvVil~lPlT-~~T~~lI~~~~L~~MK~gAiLINvg 254 (620)
..+.+.+.+||+||.++-.. ...-.+|+++.++.||||+++||++
T Consensus 106 ~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDva 151 (183)
T d1l7da1 106 EAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA 151 (183)
T ss_dssp HHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred HHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEe
Confidence 22456688999999755322 2244589999999999999999995
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=98.16 E-value=5.6e-07 Score=82.84 Aligned_cols=81 Identities=21% Similarity=0.230 Sum_probs=61.9
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC---ccccCCceecCCHHhhhcCCcEEEEcccCChhhHh
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK---VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQ 234 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~---~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~ 234 (620)
.+.++++.|||+|.||+.+++.|...|+ +|.+++|+..... ..+.......+++.+.+.++|+||.+++.. ..
T Consensus 21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~atss~---~~ 97 (159)
T d1gpja2 21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAP---HP 97 (159)
T ss_dssp CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSS---SC
T ss_pred CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecCCC---Cc
Confidence 4789999999999999999999999998 7999999864332 111112234567888899999999998743 44
Q ss_pred hcCHHHhh
Q 007040 235 IINAECLQ 242 (620)
Q Consensus 235 lI~~~~L~ 242 (620)
+|+.+.+.
T Consensus 98 ii~~~~i~ 105 (159)
T d1gpja2 98 VIHVDDVR 105 (159)
T ss_dssp CBCHHHHH
T ss_pred cccHhhhH
Confidence 77777665
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=98.01 E-value=2.3e-06 Score=73.65 Aligned_cols=92 Identities=12% Similarity=-0.058 Sum_probs=66.3
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-cC-Cce--ecCCHHhhhcCCcEEEEcccCChhhH
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF-PS-AAR--RMDTLNDLLAASDVISLHCAVTDETI 233 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~-~~-g~~--~~~sL~eLL~~sDvVil~lPlT~~T~ 233 (620)
.+|+|++|+|||.|.+|.+-|+.|..+|++|+++++......... .. .+. .-.--++.+..+++|+.+...
T Consensus 8 l~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at~d----- 82 (113)
T d1pjqa1 8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDD----- 82 (113)
T ss_dssp ECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSC-----
T ss_pred EEeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHHHhCCCcEEeecCCC-----
Confidence 479999999999999999999999999999999998764332111 11 111 111123456788888877543
Q ss_pred hhcCHHHhhccCCCcEEEEcC
Q 007040 234 QIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvg 254 (620)
..+|......+|+..++||+.
T Consensus 83 ~~~n~~i~~~a~~~~ilVNv~ 103 (113)
T d1pjqa1 83 DTVNQRVSDAAESRRIFCNVV 103 (113)
T ss_dssp HHHHHHHHHHHHHTTCEEEET
T ss_pred HHHHHHHHHHHHHcCCEEEeC
Confidence 345667778888889999964
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=98.01 E-value=5.1e-06 Score=74.26 Aligned_cols=92 Identities=10% Similarity=-0.036 Sum_probs=66.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccC-------CceecCCHHhhhcCCcEEEEcccCChhhHhh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPS-------AARRMDTLNDLLAASDVISLHCAVTDETIQI 235 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~-------g~~~~~sL~eLL~~sDvVil~lPlT~~T~~l 235 (620)
|+|+|||.|.||..+|..|...|++|..++|........... ......+..+.+..+|+|+++++. ..+...
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka-~~~~~~ 79 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKA-WQVSDA 79 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCG-GGHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeecc-cchHHH
Confidence 589999999999999999999999999999987544311100 011223455777899999999995 355555
Q ss_pred cCHHHhhccCCCcEEEEcCCC
Q 007040 236 INAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 236 I~~~~L~~MK~gAiLINvgRG 256 (620)
+ ......+++++.+|.+.-|
T Consensus 80 ~-~~l~~~~~~~~~Iv~~qNG 99 (167)
T d1ks9a2 80 V-KSLASTLPVTTPILLIHNG 99 (167)
T ss_dssp H-HHHHTTSCTTSCEEEECSS
T ss_pred H-HhhccccCcccEEeeccCc
Confidence 4 2344567889888887665
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.00 E-value=6.1e-06 Score=77.79 Aligned_cols=104 Identities=12% Similarity=-0.015 Sum_probs=72.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-------cccc-------------CCceecCCHHhhhcCCcEE
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-------VTFP-------------SAARRMDTLNDLLAASDVI 222 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~-------~~~~-------------~g~~~~~sL~eLL~~sDvV 222 (620)
|+|+|||+|-+|..+|..|...|++|++||.+..... ...+ .......++.+++..||++
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i 80 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS 80 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEE
Confidence 5799999999999999999999999999998642111 0000 1123456788999999999
Q ss_pred EEcccCCh---------hhHhhcC--HHHhhccCCCcEEEEcCCChhhcHHHHHH
Q 007040 223 SLHCAVTD---------ETIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCAVKQ 266 (620)
Q Consensus 223 il~lPlT~---------~T~~lI~--~~~L~~MK~gAiLINvgRG~vVDe~AL~~ 266 (620)
++|+|..- .....+. ...+..++++.++|.-+...+--.+.++.
T Consensus 81 ~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~ 135 (202)
T d1mv8a2 81 FICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVI 135 (202)
T ss_dssp EECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHH
T ss_pred EEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhh
Confidence 99999521 1112221 13455677899999988866655554433
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=4.7e-06 Score=78.55 Aligned_cols=132 Identities=11% Similarity=0.020 Sum_probs=90.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc---------------ccc--------------CCceecCCHH
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV---------------TFP--------------SAARRMDTLN 213 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~---------------~~~--------------~g~~~~~sL~ 213 (620)
++|+|||.|.||..+|..+...|++|+.||+++..... ... .......++.
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~~ 84 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA 84 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchhH
Confidence 68999999999999999999999999999998642110 000 0123456788
Q ss_pred hhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccC
Q 007040 214 DLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVRE 293 (620)
Q Consensus 214 eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~ 293 (620)
+.+.+||+|+=++|..-+.+.-+-.+.=+.++++++|.....+-. ...|...+.. .-+.+++=-| +|++ .
T Consensus 85 ~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~--i~~la~~~~~-p~r~ig~Hff-nP~~------~ 154 (192)
T d1f0ya2 85 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQ--ITSIANATTR-QDRFAGLHFF-NPVP------V 154 (192)
T ss_dssp HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSC--HHHHHTTSSC-GGGEEEEEEC-SSTT------T
T ss_pred hhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccc--cchhhhhccC-HhHEEeeccc-cccC------c
Confidence 999999999999999988887666666677899999987766543 3345454432 3333444333 3433 3
Q ss_pred CCcEEEcCCCC
Q 007040 294 MPNVLILPRSA 304 (620)
Q Consensus 294 ~pNVIlTPHiA 304 (620)
+|=|=+.||-.
T Consensus 155 ~~lVEIv~g~~ 165 (192)
T d1f0ya2 155 MKLVEVIKTPM 165 (192)
T ss_dssp CCEEEEECCTT
T ss_pred ccEEEEcCCCC
Confidence 34344666543
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=97.95 E-value=4.9e-06 Score=79.43 Aligned_cols=108 Identities=16% Similarity=0.201 Sum_probs=80.2
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhc-CCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLA-ASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~-~sDvVil~lPlT~~T~~lI~ 237 (620)
.|.|++|+|.|+|++|+.+|+.|..+|++|+++|............+... .+.++++. .|||++-|. +.+.|+
T Consensus 24 ~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~-~~~~~~~~~~~DI~iPcA-----~~~~I~ 97 (201)
T d1c1da1 24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTA-VALEDVLSTPCDVFAPCA-----MGGVIT 97 (201)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCGGGGGGCCCSEEEECS-----CSCCBC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhcccc-cCccccccccceeeeccc-----cccccc
Confidence 48999999999999999999999999999999998764333222233333 36677766 689988554 447899
Q ss_pred HHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
.+....|+ -.+++..+-+++.++. .-+.|.++.|.
T Consensus 98 ~~~a~~i~-ak~i~e~AN~p~~~~~-~~~~L~~rgI~ 132 (201)
T d1c1da1 98 TEVARTLD-CSVVAGAANNVIADEA-ASDILHARGIL 132 (201)
T ss_dssp HHHHHHCC-CSEECCSCTTCBCSHH-HHHHHHHTTCE
T ss_pred HHHHhhhh-hheeeccCCCCcchhh-HHHHhcccceE
Confidence 99999987 4577777777776664 34566666654
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.86 E-value=1.2e-05 Score=74.51 Aligned_cols=93 Identities=15% Similarity=0.223 Sum_probs=64.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCC----------Cccc-----cCCceecCCHHhhhcCCcEEEEccc
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKG----------KVTF-----PSAARRMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~----------~~~~-----~~g~~~~~sL~eLL~~sDvVil~lP 227 (620)
|+|+|||.|.+|.++|..|...|.+|..|.|..... ...+ ........++++++..+|+|++++|
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avp 80 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS 80 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcccc
Confidence 589999999999999999999999999998742110 0001 1112345688999999999999999
Q ss_pred CChhhHhhcCHHHhhccCCCcEEEEcCCChh
Q 007040 228 VTDETIQIINAECLQHIKPGAFLVNTGSSQL 258 (620)
Q Consensus 228 lT~~T~~lI~~~~L~~MK~gAiLINvgRG~v 258 (620)
. ...+.++. +....+++. .+|.+..|-.
T Consensus 81 s-~~~~~~~~-~l~~~l~~~-~ii~~tkg~~ 108 (180)
T d1txga2 81 T-DGVLPVMS-RILPYLKDQ-YIVLISKGLI 108 (180)
T ss_dssp G-GGHHHHHH-HHTTTCCSC-EEEECCCSEE
T ss_pred h-hhhHHHHH-hhccccccc-eecccccCcc
Confidence 4 34555543 345556655 5555666643
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=97.80 E-value=3.9e-06 Score=78.96 Aligned_cols=93 Identities=11% Similarity=-0.006 Sum_probs=67.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCC--------------CccccCCceecCCHHhhhcCCcEEEEcccC
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKG--------------KVTFPSAARRMDTLNDLLAASDVISLHCAV 228 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~--------------~~~~~~g~~~~~sL~eLL~~sDvVil~lPl 228 (620)
++|+|||.|.+|.++|..|...|.+|..|+++.... ...++..+....++++++..+|+|++++|.
T Consensus 8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiiavPs 87 (189)
T d1n1ea2 8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT 87 (189)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEECSCH
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEcCcH
Confidence 569999999999999999999999999999764211 012334456677899999999999999993
Q ss_pred ChhhHhhcCHH---H-hhccCCCcEEEEcCCC
Q 007040 229 TDETIQIINAE---C-LQHIKPGAFLVNTGSS 256 (620)
Q Consensus 229 T~~T~~lI~~~---~-L~~MK~gAiLINvgRG 256 (620)
...+.++..- . ....+++..+|+++-|
T Consensus 88 -~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKG 118 (189)
T d1n1ea2 88 -QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKG 118 (189)
T ss_dssp -HHHHHHHHHHCHHHHHHHHHHTCCEEECCCS
T ss_pred -HHHHHHHHHHHhhhhhhhccCCcEEEEEECC
Confidence 3444444221 1 1134567889998876
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.72 E-value=1.7e-05 Score=65.80 Aligned_cols=68 Identities=16% Similarity=0.139 Sum_probs=48.4
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-ccccCCce-ecCC-HHhhhcCCcEEEEcc
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-VTFPSAAR-RMDT-LNDLLAASDVISLHC 226 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~-~~~~~g~~-~~~s-L~eLL~~sDvVil~l 226 (620)
++.|++|+|+|+|..|+++|+.|..+|++|+++|.+..... .....+.. .... -++.+.+.|+|++.-
T Consensus 2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~SP 72 (93)
T d2jfga1 2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVASP 72 (93)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEESBCCHHHHHHCSEEEECT
T ss_pred CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhhccceeecccchhhhccCCEEEECC
Confidence 46899999999999999999999999999999998664332 11112221 1111 245667888888753
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.71 E-value=1.1e-05 Score=75.36 Aligned_cols=92 Identities=16% Similarity=0.103 Sum_probs=72.3
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCC-CccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKG-KVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~-~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
-|.+++|+|||||.=|.+=|..|+--|++|++--|..... ..+...|.. +.++.|+.+.||+|.+.+|.. .-..+..
T Consensus 13 ~ik~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~-v~~~~eA~~~aDiim~L~PD~-~q~~vy~ 90 (182)
T d1np3a2 13 IIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLK-VADVKTAVAAADVVMILTPDE-FQGRLYK 90 (182)
T ss_dssp HHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCE-EECHHHHHHTCSEEEECSCHH-HHHHHHH
T ss_pred HHCCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccc-cccHHHHhhhcCeeeeecchH-HHHHHHH
Confidence 4789999999999999999999999999998877665322 223334444 458999999999999999943 3344566
Q ss_pred HHHhhccCCCcEEEE
Q 007040 238 AECLQHIKPGAFLVN 252 (620)
Q Consensus 238 ~~~L~~MK~gAiLIN 252 (620)
......||+|+.|.=
T Consensus 91 ~~I~p~lk~g~~L~F 105 (182)
T d1np3a2 91 EEIEPNLKKGATLAF 105 (182)
T ss_dssp HHTGGGCCTTCEEEE
T ss_pred HhhhhhcCCCcEEEE
Confidence 778899999998864
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=97.71 E-value=6.5e-06 Score=77.00 Aligned_cols=104 Identities=16% Similarity=0.141 Sum_probs=76.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-----------ccC-------------CceecCCHHhhhcC
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT-----------FPS-------------AARRMDTLNDLLAA 218 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~-----------~~~-------------g~~~~~sL~eLL~~ 218 (620)
++|+|||.|.||..+|..+...|++|+.||++....... ... ......++ +.+.+
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 83 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFGN 83 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGGG
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccc-ccccc
Confidence 469999999999999999999999999999986422100 000 01122233 34789
Q ss_pred CcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHH
Q 007040 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269 (620)
Q Consensus 219 sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~ 269 (620)
||+|+-++|.+-+.+.=+-.+.-+.++++++|...+.+-.+ ..|.+.+.
T Consensus 84 adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i--~~la~~~~ 132 (186)
T d1wdka3 84 VDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISI--SLLAKALK 132 (186)
T ss_dssp CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCH--HHHGGGCS
T ss_pred cceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccH--HHHHHhcc
Confidence 99999999999988886667777888999999887776443 44555543
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=97.70 E-value=5e-05 Score=70.38 Aligned_cols=78 Identities=18% Similarity=0.256 Sum_probs=66.9
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||-+. +|+.+|.+|...|++|+.++.+. .++.+.+.+||+|+.++... ++|.
T Consensus 34 ~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t--------------~~l~~~~~~ADivI~a~G~p----~~i~ 95 (166)
T d1b0aa1 34 DTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT--------------KNLRHHVENADLLIVAVGKP----GFIP 95 (166)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC--------------SCHHHHHHHCSEEEECSCCT----TCBC
T ss_pred ccccceEEEEeccccccHHHHHHHHHhhcccccccccc--------------chhHHHHhhhhHhhhhccCc----cccc
Confidence 58999999999998 89999999999999999997543 36788999999999999844 6787
Q ss_pred HHHhhccCCCcEEEEcCCCh
Q 007040 238 AECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~ 257 (620)
.+ ++|+|+++||+|--.
T Consensus 96 ~~---~vk~g~vvIDvGi~~ 112 (166)
T d1b0aa1 96 GD---WIKEGAIVIDVGINR 112 (166)
T ss_dssp TT---TSCTTCEEEECCCEE
T ss_pred cc---ccCCCcEEEecCcee
Confidence 54 578999999998643
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.67 E-value=0.00015 Score=67.12 Aligned_cols=158 Identities=8% Similarity=-0.020 Sum_probs=96.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc-------cc-----------cCCceecCCHHhhhcCCcEEEE
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV-------TF-----------PSAARRMDTLNDLLAASDVISL 224 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~-------~~-----------~~g~~~~~sL~eLL~~sDvVil 224 (620)
|+|+|||+|-+|..+|..+ +.|++|++||.+...... .. ........+......++|+|++
T Consensus 1 MkI~ViGlG~vGl~~a~~~-a~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v 79 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLL-SLQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII 79 (196)
T ss_dssp CEEEEECCSHHHHHHHHHH-TTTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred CEEEEECCChhHHHHHHHH-HCCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccc
Confidence 5799999999999999766 579999999987532110 00 0111223355566788999999
Q ss_pred cccCChhhHh-hcC-------HHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCC----CCCCCcccc
Q 007040 225 HCAVTDETIQ-IIN-------AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG----PQWMEAWVR 292 (620)
Q Consensus 225 ~lPlT~~T~~-lI~-------~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~----P~~~~spL~ 292 (620)
++|......+ +.+ .+.+...+++.++|..+.-.+-..+.+...+.+.++. +-+ |-..-..+.
T Consensus 80 ~vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~~~~~~~~~------~~PE~i~~G~ai~d~~ 153 (196)
T d1dlja2 80 ATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTDRII------FSPEFLRESKALYDNL 153 (196)
T ss_dssp CCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCSCEE------ECCCCCCTTSTTHHHH
T ss_pred cCCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeeeccchhhhc------cchhhcchhhhHhhcc
Confidence 9997544222 111 1233445778888888887776777777777665543 222 222223456
Q ss_pred CCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcC
Q 007040 293 EMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDG 329 (620)
Q Consensus 293 ~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G 329 (620)
..|.||+--+-... .......+.+++.+.......
T Consensus 154 ~p~riv~G~~~~~~--~~~~~~~~~~~~l~~~~~~~~ 188 (196)
T d1dlja2 154 YPSRIIVSCEENDS--PKVKADAEKFALLLKSAAKKN 188 (196)
T ss_dssp SCSCEEEECCTTSC--HHHHHHHHHHHHHHHHHCSCS
T ss_pred CCCEEEEeCCHhhH--HHHHHHHHHHHHHHHhhhccC
Confidence 66777765543222 223445566666666654333
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.58 E-value=0.00013 Score=67.63 Aligned_cols=133 Identities=18% Similarity=0.239 Sum_probs=87.5
Q ss_pred eeecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhc
Q 007040 158 RRCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII 236 (620)
Q Consensus 158 ~~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI 236 (620)
.++.|+++.|||-+. +|+++|.+|...|++|..++.+. .++.+.+.+||+|+.+++.. ++|
T Consensus 35 i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t--------------~~l~~~~~~aDivi~a~G~~----~~i 96 (170)
T d1a4ia1 35 VPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT--------------AHLDEEVNKGDILVVATGQP----EMV 96 (170)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SSHHHHHTTCSEEEECCCCT----TCB
T ss_pred cccccceEEEEecCCccchHHHHHHHhccCceEEEeccc--------------ccHHHHHhhccchhhccccc----ccc
Confidence 358999999999987 89999999999999999998754 35778899999999999854 677
Q ss_pred CHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecC-CCCCCCCccccCCCcEEEcCCCCCCcHHHHHHHH
Q 007040 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGA-EGPQWMEAWVREMPNVLILPRSADYSEEVWMEIR 315 (620)
Q Consensus 237 ~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~-E~P~~~~spL~~~pNVIlTPHiAg~T~ea~~~~~ 315 (620)
..+ ++|+|+++||+|--.+.|.... ..+++. =||- ++ ..+ ---.+||==+|.=+-+..-+.
T Consensus 97 ~~~---~vk~g~iviDvgi~~~~~~~~~----~~~~~~---gdvd~~~-------v~~-~a~~~TPvPGGVGp~Tva~L~ 158 (170)
T d1a4ia1 97 KGE---WIKPGAIVIDCGINYVPDDKKP----NGRKVV---GDVAYDE-------AKE-RASFITPVPGGVGPMTVAMLM 158 (170)
T ss_dssp CGG---GSCTTCEEEECCCBC--------------CCB---CSBCHHH-------HTT-TCSEECCSSSSHHHHHHHHHH
T ss_pred ccc---cccCCCeEeccCcccccccccC----CCCEEe---cccchHh-------hhh-hceEeCCCCCchhHHHHHHHH
Confidence 754 6889999999987655543321 223343 2331 11 001 123489965555444444444
Q ss_pred HHHHHHHHHHH
Q 007040 316 DKAISVLQTFF 326 (620)
Q Consensus 316 ~~a~enL~~~L 326 (620)
+.+++--++||
T Consensus 159 ~N~v~a~~r~l 169 (170)
T d1a4ia1 159 QSTVESAKRFL 169 (170)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 44555555554
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.48 E-value=4.6e-05 Score=70.93 Aligned_cols=93 Identities=22% Similarity=0.176 Sum_probs=67.0
Q ss_pred eeecCcEEEEEeCChh-hHHHHHHHhhCCCEEEEECCCCCCCC-----ccc-cCCc-----eecCCHHhhhcCCcEEEEc
Q 007040 158 RRCRGLVLGIVGRSAS-ARALATRSLSFKMSVLYFDVPEGKGK-----VTF-PSAA-----RRMDTLNDLLAASDVISLH 225 (620)
Q Consensus 158 ~~L~GktVGIIGlG~I-G~~vA~~LkafG~~V~~~dr~~~~~~-----~~~-~~g~-----~~~~sL~eLL~~sDvVil~ 225 (620)
.++.|+++.|||-+.| |+++|.+|...|++|+.++....... ... ..+. ...+.+++...++|+|+..
T Consensus 25 ~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvIsa 104 (171)
T d1edza1 25 NRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITG 104 (171)
T ss_dssp CTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEEC
T ss_pred CCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccceeeeeeccccccccchhHHhhccccCCEEEEc
Confidence 4689999999999976 99999999999999999886531100 000 0011 1123377888899999999
Q ss_pred ccCChhhHhh-cCHHHhhccCCCcEEEEcCCCh
Q 007040 226 CAVTDETIQI-INAECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 226 lPlT~~T~~l-I~~~~L~~MK~gAiLINvgRG~ 257 (620)
+|.. ++ +.. ++.|+|+++||+|-..
T Consensus 105 vG~p----~~~i~~---d~ik~GavvIDvGi~~ 130 (171)
T d1edza1 105 VPSE----NYKFPT---EYIKEGAVCINFACTK 130 (171)
T ss_dssp CCCT----TCCBCT---TTSCTTEEEEECSSSC
T ss_pred cCCC----ccccCh---hhcccCceEeeccccc
Confidence 9854 33 544 3578999999999654
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.46 E-value=2.8e-05 Score=67.69 Aligned_cols=73 Identities=14% Similarity=0.134 Sum_probs=53.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCC-------ceecCCHHhh-hcCCcEEEEcccCChhhHh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSA-------ARRMDTLNDL-LAASDVISLHCAVTDETIQ 234 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g-------~~~~~sL~eL-L~~sDvVil~lPlT~~T~~ 234 (620)
|++.|+|+|.+|+.+|+.|...|++|+++|.++.........+ ....+.|+++ +.++|.|++++|...++.-
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~~~ 80 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQAST 80 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCchHHhHH
Confidence 4688999999999999999999999999998864322111111 1123345555 7899999999997765443
Q ss_pred h
Q 007040 235 I 235 (620)
Q Consensus 235 l 235 (620)
+
T Consensus 81 ~ 81 (134)
T d2hmva1 81 L 81 (134)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=97.38 E-value=0.00011 Score=70.65 Aligned_cols=91 Identities=15% Similarity=0.167 Sum_probs=66.4
Q ss_pred ecC-cEEEEEeCChhhHHHHHHHhh------CCCEEEEECCCC-CCCCccccCCce----ecCCHHhhhcCCcEEEEccc
Q 007040 160 CRG-LVLGIVGRSASARALATRSLS------FKMSVLYFDVPE-GKGKVTFPSAAR----RMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 160 L~G-ktVGIIGlG~IG~~vA~~Lka------fG~~V~~~dr~~-~~~~~~~~~g~~----~~~sL~eLL~~sDvVil~lP 227 (620)
+.| |+|+|||||.-|.+=|..|+- .|.+|++-=|.. .....+..+|.. .+.+..|+.+.||+|.+.+|
T Consensus 41 ~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLlP 120 (226)
T d1qmga2 41 FKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLIS 120 (226)
T ss_dssp TTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECSC
T ss_pred hcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEecc
Confidence 578 899999999999999999997 567776554333 332333334433 13468899999999999999
Q ss_pred CChhhHhhcCHHHhhccCCCcEEEE
Q 007040 228 VTDETIQIINAECLQHIKPGAFLVN 252 (620)
Q Consensus 228 lT~~T~~lI~~~~L~~MK~gAiLIN 252 (620)
...+. .+. .+....||+|+.|.=
T Consensus 121 De~Q~-~vy-~~I~p~Lk~G~~L~F 143 (226)
T d1qmga2 121 DSAQA-DNY-EKVFSHMKPNSILGL 143 (226)
T ss_dssp HHHHH-HHH-HHHHHHSCTTCEEEE
T ss_pred hHHHH-HHH-HHHHHhcCCCceeee
Confidence 65443 344 468899999998765
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=97.34 E-value=7.4e-05 Score=72.53 Aligned_cols=109 Identities=16% Similarity=0.190 Sum_probs=77.9
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc-CCceecCCHHhhh-cCCcEEEEcccCChhhHhh
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP-SAARRMDTLNDLL-AASDVISLHCAVTDETIQI 235 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~-~g~~~~~sL~eLL-~~sDvVil~lPlT~~T~~l 235 (620)
.+|.|++|.|-|+|++|+.+|+.|...|++|++.|.+......... .+... .+.++++ ..|||++-|. ..+.
T Consensus 35 ~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~-~~~~~~~~~~cDIl~PcA-----~~~~ 108 (230)
T d1leha1 35 DSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADA-VAPNAIYGVTCDIFAPCA-----LGAV 108 (230)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEE-CCGGGTTTCCCSEEEECS-----CSCC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCcc-cCCcccccccccEecccc-----cccc
Confidence 3589999999999999999999999999999999987533221111 12233 3455554 4599999765 4568
Q ss_pred cCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 236 INAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 236 I~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
|+.+....++ -.++|-.+-..+.+.++. +.|.+..|.
T Consensus 109 I~~~~~~~l~-ak~Ive~ANn~~t~~ea~-~~L~~rGI~ 145 (230)
T d1leha1 109 LNDFTIPQLK-AKVIAGSADNQLKDPRHG-KYLHELGIV 145 (230)
T ss_dssp BSTTHHHHCC-CSEECCSCSCCBSSHHHH-HHHHHHTCE
T ss_pred cChHHhhccC-ccEEEecccCCCCCchHH-HHHHhhCcE
Confidence 8888888887 457777777777776653 445555553
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.24 E-value=7e-05 Score=66.66 Aligned_cols=69 Identities=12% Similarity=-0.026 Sum_probs=50.9
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc---cc------CCceecCCHHhhhcCCcEEEEcccCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT---FP------SAARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~---~~------~g~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
++|+|.|||.|.||..+|+.|...|++|+++||+....... +. ........+++.+...|+++.++|..
T Consensus 1 ~~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~ 78 (182)
T d1e5qa1 1 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYT 78 (182)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGG
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccch
Confidence 36899999999999999999999999999999987543311 11 11112234567788889988888754
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.23 E-value=0.00021 Score=65.14 Aligned_cols=72 Identities=15% Similarity=0.161 Sum_probs=52.2
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc---c-cCCceecCCHHhh-hcCCcEEEEcccCCh
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT---F-PSAARRMDTLNDL-LAASDVISLHCAVTD 230 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~---~-~~g~~~~~sL~eL-L~~sDvVil~lPlT~ 230 (620)
.+.|++|.|+|.|..+++++..|...|++|++++|+....... + ..+.....++++. ...+|+||++.|..-
T Consensus 15 ~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~Tp~G~ 91 (170)
T d1nyta1 15 IRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGI 91 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGG
T ss_pred CCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccccccccccccceeecccccCc
Confidence 4689999999999999999999999999999999987443211 1 0111122233333 457899999999763
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=97.19 E-value=0.0007 Score=61.57 Aligned_cols=82 Identities=15% Similarity=0.150 Sum_probs=57.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEEE-EECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHH
Q 007040 163 LVLGIVGRSASARALATRSLSF-KMSVL-YFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-G~~V~-~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~ 240 (620)
.+|||||+|.||+.+++.++.. ++++. ++|++..... ..+.....++.+++.+.|+|++++|..... .-.
T Consensus 4 irvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~---~~~~~~~~~~~~~~~~~D~Vvi~tp~~~h~-----~~a 75 (170)
T d1f06a1 4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDT---KTPVFDVADVDKHADDVDVLFLCMGSATDI-----PEQ 75 (170)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSS---SSCEEEGGGGGGTTTTCSEEEECSCTTTHH-----HHH
T ss_pred ceEEEECChHHHHHHHHHHHhCCCcEEEEEEeccccccc---ccccccchhhhhhccccceEEEeCCCcccH-----HHH
Confidence 4699999999999999999976 67766 5566653322 234455667888899999999999966321 123
Q ss_pred hhccCCCcEEEE
Q 007040 241 LQHIKPGAFLVN 252 (620)
Q Consensus 241 L~~MK~gAiLIN 252 (620)
...++.|.-+|.
T Consensus 76 ~~aL~aG~~vv~ 87 (170)
T d1f06a1 76 APKFAQFACTVD 87 (170)
T ss_dssp HHHHTTTSEEEC
T ss_pred HHHHHCCCcEEE
Confidence 344566665553
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.13 E-value=0.0002 Score=64.79 Aligned_cols=92 Identities=14% Similarity=0.124 Sum_probs=63.6
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCce----ecC--C-HHhhhcCCcEEEEcccCChhhH
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR----RMD--T-LNDLLAASDVISLHCAVTDETI 233 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~----~~~--s-L~eLL~~sDvVil~lPlT~~T~ 233 (620)
.|.+|.|+|.|.+|...+..++.+|++|+++|++....+.....|.. ..+ . .+......|+|+.++......
T Consensus 27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~~~- 105 (168)
T d1piwa2 27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDI- 105 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTTC-
T ss_pred CCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCccc-
Confidence 58899999999999999999999999999999987655433333321 111 1 334455679999887643211
Q ss_pred hhcCHHHhhccCCCcEEEEcCC
Q 007040 234 QIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgR 255 (620)
.+ ...+..++++..++.+|-
T Consensus 106 -~~-~~~~~~l~~~G~iv~~G~ 125 (168)
T d1piwa2 106 -DF-NIMPKAMKVGGRIVSISI 125 (168)
T ss_dssp -CT-TTGGGGEEEEEEEEECCC
T ss_pred -hH-HHHHHHhhccceEEEecc
Confidence 12 235677788888888763
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=97.05 E-value=0.001 Score=64.80 Aligned_cols=70 Identities=11% Similarity=0.091 Sum_probs=60.9
Q ss_pred CCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 204 SAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 204 ~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
.|+....++.|++++||+|++++|..+.+..++ .+....+++|++++|++.........+.+.|+...+.
T Consensus 127 ~Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi-~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~ 196 (242)
T d2b0ja2 127 VGLKVTSDDREAVEGADIVITWLPKGNKQPDII-KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLN 196 (242)
T ss_dssp GTCEEESCHHHHHTTCSEEEECCTTCTTHHHHH-HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSE
T ss_pred CCCEEECCHHHHHhcCCeEEEeeecHHHHHHHH-HHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCE
Confidence 356667899999999999999999887788888 5788999999999999999988888899988877665
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.05 E-value=0.00032 Score=63.06 Aligned_cols=97 Identities=13% Similarity=0.159 Sum_probs=62.4
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC----------ccccCCceecCCHHhhhcCCcEEEEccc
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK----------VTFPSAARRMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~--~V~~~dr~~~~~~----------~~~~~g~~~~~sL~eLL~~sDvVil~lP 227 (620)
-.+++|+|||.|.+|..+|..|...|. ++..||....... ............-.+.++.||+|+++..
T Consensus 4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag 83 (148)
T d1ldna1 4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAG 83 (148)
T ss_dssp TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCS
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEecc
Confidence 367899999999999999999987665 8999998753211 0111122222233467889999999765
Q ss_pred CChh---h--------HhhcC--HHHhhccCCCcEEEEcCCC
Q 007040 228 VTDE---T--------IQIIN--AECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 228 lT~~---T--------~~lI~--~~~L~~MK~gAiLINvgRG 256 (620)
.... + ..++. .+.+....|.+++|+++-.
T Consensus 84 ~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNP 125 (148)
T d1ldna1 84 ANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNP 125 (148)
T ss_dssp CCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSS
T ss_pred cccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCc
Confidence 4321 1 11110 1244555688999998653
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=97.04 E-value=0.0011 Score=59.10 Aligned_cols=94 Identities=13% Similarity=0.112 Sum_probs=57.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC---c------cccCCceecCCHHhhhcCCcEEEEcccCChh
Q 007040 163 LVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK---V------TFPSAARRMDTLNDLLAASDVISLHCAVTDE 231 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~--~V~~~dr~~~~~~---~------~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~ 231 (620)
++|+|||.|.+|..+|-.+...+. ++..||....... . .+.........-.+.++.||+|+++.-....
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~ 81 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANRK 81 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC---
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEecccccC
Confidence 479999999999999999987666 8999998764432 0 0111112223334567899999998543221
Q ss_pred ---hH-hhc--C-------HHHhhccCCCcEEEEcCCC
Q 007040 232 ---TI-QII--N-------AECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 232 ---T~-~lI--~-------~~~L~~MK~gAiLINvgRG 256 (620)
++ .++ | .+.+....|.+++|+++..
T Consensus 82 ~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtNP 119 (142)
T d1y6ja1 82 PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNP 119 (142)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSS
T ss_pred cCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecCh
Confidence 11 111 1 1245556789999998764
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=97.01 E-value=0.00028 Score=65.05 Aligned_cols=71 Identities=11% Similarity=0.216 Sum_probs=52.7
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcccc----------CCc--ee---cCCHHhhhcCCcEE
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFP----------SAA--RR---MDTLNDLLAASDVI 222 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~~----------~g~--~~---~~sL~eLL~~sDvV 222 (620)
++.|++|.|||.|..|++++..|...|. +++.++|+......... ... .. ...+.+.+..+|+|
T Consensus 15 ~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dii 94 (182)
T d1vi2a1 15 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADIL 94 (182)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEE
T ss_pred CcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhccccee
Confidence 5789999999999999999999999998 79999998754331110 000 11 12345667899999
Q ss_pred EEcccCC
Q 007040 223 SLHCAVT 229 (620)
Q Consensus 223 il~lPlT 229 (620)
+++.|..
T Consensus 95 IN~Tp~G 101 (182)
T d1vi2a1 95 TNGTKVG 101 (182)
T ss_dssp EECSSTT
T ss_pred ccccCCc
Confidence 9999965
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=97.00 E-value=0.00067 Score=60.26 Aligned_cols=94 Identities=13% Similarity=0.144 Sum_probs=61.3
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC----------ccccCCc-eecCCHHhhhcCCcEEEEcc--c
Q 007040 163 LVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK----------VTFPSAA-RRMDTLNDLLAASDVISLHC--A 227 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~--~V~~~dr~~~~~~----------~~~~~g~-~~~~sL~eLL~~sDvVil~l--P 227 (620)
++|+|||.|.+|..+|..|...|. ++..||....... ....... ....+..+.+++||+|+++. |
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag~~ 80 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGLP 80 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCSCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEecC
Confidence 479999999999999999987775 9999998764322 0001111 12234456789999999985 3
Q ss_pred CChh-hHh--------hcC--HHHhhccCCCcEEEEcCCC
Q 007040 228 VTDE-TIQ--------IIN--AECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 228 lT~~-T~~--------lI~--~~~L~~MK~gAiLINvgRG 256 (620)
..+. ++. ++- .+.+....|++++++++-.
T Consensus 81 ~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNP 120 (142)
T d1guza1 81 RKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNP 120 (142)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSS
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecCC
Confidence 3332 111 111 1244455689999998763
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=96.94 E-value=0.00075 Score=61.02 Aligned_cols=96 Identities=14% Similarity=0.270 Sum_probs=63.5
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC----------ccc--cCCceecCCHHhhhcCCcEEEEccc
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK----------VTF--PSAARRMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~----------~~~--~~g~~~~~sL~eLL~~sDvVil~lP 227 (620)
+.++|+|||.|.+|+.+|..|...++ +++.+|.+..... ... ........+.++.++.||+|++++.
T Consensus 6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvitag 85 (154)
T d1pzga1 6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAG 85 (154)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEecc
Confidence 46789999999999999988876665 8999998764222 000 1112223456788999999999884
Q ss_pred CC--hh------hHh-hc--C-------HHHhhccCCCcEEEEcCCC
Q 007040 228 VT--DE------TIQ-II--N-------AECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 228 lT--~~------T~~-lI--~-------~~~L~~MK~gAiLINvgRG 256 (620)
.. +. |+. ++ | .+.+....|.+++|+++-.
T Consensus 86 ~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsNP 132 (154)
T d1pzga1 86 LTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNP 132 (154)
T ss_dssp CSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred cccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCCc
Confidence 32 11 221 11 1 1234556789999998764
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.92 E-value=0.00028 Score=61.42 Aligned_cols=88 Identities=13% Similarity=0.141 Sum_probs=58.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc-CCce-------ecCCHHhh-hcCCcEEEEcccCChhhH
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP-SAAR-------RMDTLNDL-LAASDVISLHCAVTDETI 233 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~-~g~~-------~~~sL~eL-L~~sDvVil~lPlT~~T~ 233 (620)
++|.|+|+|.+|+.+|+.|...|..|++.|.++........ .+.. ..+.|+++ +.++|.++...+..+ .
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~--~ 78 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEE--V 78 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHH--H
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcHH--H
Confidence 57999999999999999999999999999987643221111 1111 11234444 688999998877553 3
Q ss_pred hhcCHHHhhccCCCcEEEE
Q 007040 234 QIINAECLQHIKPGAFLVN 252 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLIN 252 (620)
+++-....+.+.+..+++-
T Consensus 79 N~~~~~~~k~~~~~~iI~~ 97 (132)
T d1lssa_ 79 NLMSSLLAKSYGINKTIAR 97 (132)
T ss_dssp HHHHHHHHHHTTCCCEEEE
T ss_pred HHHHHHHHHHcCCceEEEE
Confidence 3444445566766666543
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=96.91 E-value=0.00063 Score=61.18 Aligned_cols=93 Identities=18% Similarity=0.218 Sum_probs=60.4
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC----------ccccCC-ceecCCHHhhhcCCcEEEEcccCC
Q 007040 163 LVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK----------VTFPSA-ARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~--~V~~~dr~~~~~~----------~~~~~g-~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
++|+|||.|.+|..+|-.|...|+ ++..||....... ...... .....+. +.++.||+|+++....
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~-~~l~~adiVVitaG~~ 80 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGNI 80 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSCG
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCH-HHhccccEEEEecccc
Confidence 689999999999999999886665 8999998754211 011111 1222333 5678999999986642
Q ss_pred h-------h--------hHhhcC--HHHhhccCCCcEEEEcCCC
Q 007040 230 D-------E--------TIQIIN--AECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 230 ~-------~--------T~~lI~--~~~L~~MK~gAiLINvgRG 256 (620)
. . +..++. ...+....|++++|+++-.
T Consensus 81 ~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNP 124 (146)
T d1hyha1 81 KLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNP 124 (146)
T ss_dssp GGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSS
T ss_pred ccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCc
Confidence 1 1 122221 2344566889999998764
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=96.78 E-value=0.00092 Score=60.00 Aligned_cols=94 Identities=12% Similarity=0.160 Sum_probs=60.2
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCC--CEEEEECCCCCCCC---------ccc-cCCceecCCHHhhhcCCcEEEEcccC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFK--MSVLYFDVPEGKGK---------VTF-PSAARRMDTLNDLLAASDVISLHCAV 228 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG--~~V~~~dr~~~~~~---------~~~-~~g~~~~~sL~eLL~~sDvVil~lPl 228 (620)
..++|+|||.|.+|..+|..|...| -+|..||+...... ..+ ........+.++ ++.||+|+++...
T Consensus 4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~~-~~~adivvitag~ 82 (146)
T d1ez4a1 4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSD-CKDADLVVITAGA 82 (146)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGG-GTTCSEEEECCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHHH-hccccEEEEeccc
Confidence 4679999999999999999998766 49999998753211 011 111223345554 5899999997643
Q ss_pred Chh---h--------HhhcC--HHHhhccCCCcEEEEcCC
Q 007040 229 TDE---T--------IQIIN--AECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 229 T~~---T--------~~lI~--~~~L~~MK~gAiLINvgR 255 (620)
... + ..++. ...+..-.|.+++|+++-
T Consensus 83 ~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtN 122 (146)
T d1ez4a1 83 PQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN 122 (146)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCC
Confidence 221 1 11221 124556678899999875
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=96.78 E-value=0.00067 Score=60.91 Aligned_cols=106 Identities=16% Similarity=0.117 Sum_probs=63.7
Q ss_pred cEEEEEeCChhhHH-HHHHHhhC-CCEEE-EECCCCCCCCcc-ccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 163 LVLGIVGRSASARA-LATRSLSF-KMSVL-YFDVPEGKGKVT-FPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 163 ktVGIIGlG~IG~~-vA~~Lkaf-G~~V~-~~dr~~~~~~~~-~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
.+|||||+|.||+. .+..++.. +++|+ ++|++....... ...++...+++++++.+.|+|++++|.. ++.-+-.
T Consensus 2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~~--~h~~~~~ 79 (164)
T d1tlta1 2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTA--SHFDVVS 79 (164)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTT--HHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhhcccccccccch--hcccccc
Confidence 46999999999986 56667655 77765 678877544321 1223455678999999999999999955 3222222
Q ss_pred HHhhccCCCcEEEEc-CCChhhcHHHHHHHHHcCC
Q 007040 239 ECLQHIKPGAFLVNT-GSSQLLDDCAVKQLLIDGT 272 (620)
Q Consensus 239 ~~L~~MK~gAiLINv-gRG~vVDe~AL~~AL~~G~ 272 (620)
..+..=| .+++.- ---.+-+...|.++.++..
T Consensus 80 ~al~~gk--~V~~EKPla~~~~e~~~l~~~a~~~~ 112 (164)
T d1tlta1 80 TLLNAGV--HVCVDKPLAENLRDAERLVELAARKK 112 (164)
T ss_dssp HHHHTTC--EEEEESSSCSSHHHHHHHHHHHHHTT
T ss_pred ccccccc--eeeccccccCCHHHHHHHHHHHHHcC
Confidence 2333221 344442 1122344455655555443
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=96.75 E-value=0.00081 Score=59.81 Aligned_cols=94 Identities=19% Similarity=0.264 Sum_probs=60.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC--CEEEEECCCCCCCC---------ccccCCceecCCHHhhhcCCcEEEEcccC--C
Q 007040 163 LVLGIVGRSASARALATRSLSFK--MSVLYFDVPEGKGK---------VTFPSAARRMDTLNDLLAASDVISLHCAV--T 229 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG--~~V~~~dr~~~~~~---------~~~~~g~~~~~sL~eLL~~sDvVil~lPl--T 229 (620)
++|+|||.|.+|..+|..+...+ -++..+|....... ..+........+..+.++.||+|+++.-. .
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~ 80 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGVPQK 80 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCCCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEecccccC
Confidence 57999999999999999887544 59999998753222 11111122223344568899999998643 2
Q ss_pred h-h--------hHhhcC--HHHhhccCCCcEEEEcCCC
Q 007040 230 D-E--------TIQIIN--AECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 230 ~-~--------T~~lI~--~~~L~~MK~gAiLINvgRG 256 (620)
+ . +..++. .+.+....|++++|+++-.
T Consensus 81 ~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtNP 118 (140)
T d1a5za1 81 PGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNP 118 (140)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred CCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCCc
Confidence 1 1 112221 2345666889999998754
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=96.72 E-value=0.00082 Score=68.47 Aligned_cols=90 Identities=17% Similarity=0.245 Sum_probs=68.0
Q ss_pred CcEEEEEeCChhhHHHHHHHh-hCCC-EEEEECCCCCCCCc-------cccCCceecCCHHhhhcCCcEEEEcccCChhh
Q 007040 162 GLVLGIVGRSASARALATRSL-SFKM-SVLYFDVPEGKGKV-------TFPSAARRMDTLNDLLAASDVISLHCAVTDET 232 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lk-afG~-~V~~~dr~~~~~~~-------~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T 232 (620)
-++++|||.|..+..-++.+. -++. +|.+|++++..... .....+..+.+++++++.||+|+++++ ++.+
T Consensus 128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Ta-s~s~ 206 (340)
T d1x7da_ 128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTA-DKAY 206 (340)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCC-CSSE
T ss_pred CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeeccc-cCCC
Confidence 457999999999998888765 5666 89999998743321 111223457899999999999999886 3445
Q ss_pred HhhcCHHHhhccCCCcEEEEcCC
Q 007040 233 IQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 233 ~~lI~~~~L~~MK~gAiLINvgR 255 (620)
..+|.. +.+|||+.+..+|.
T Consensus 207 ~Pv~~~---~~l~pG~hI~aiGs 226 (340)
T d1x7da_ 207 ATIITP---DMLEPGMHLNAVGG 226 (340)
T ss_dssp EEEECG---GGCCTTCEEEECSC
T ss_pred Ccccch---hhcCCCCEEeeccc
Confidence 568875 46899999999875
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=96.71 E-value=0.00071 Score=62.50 Aligned_cols=40 Identities=10% Similarity=-0.034 Sum_probs=36.5
Q ss_pred eeecCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCC
Q 007040 158 RRCRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGK 197 (620)
Q Consensus 158 ~~L~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~ 197 (620)
.+|.||++.|.| -|.||+++|+.|...|++|+.++|+...
T Consensus 19 ~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~ 59 (191)
T d1luaa1 19 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDK 59 (191)
T ss_dssp SCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHH
Confidence 368999999999 7999999999999999999999998643
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=96.69 E-value=0.0018 Score=59.03 Aligned_cols=97 Identities=16% Similarity=0.212 Sum_probs=63.5
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC----------ccccCCc-eecCCHHhhhcCCcEEEEc
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK----------VTFPSAA-RRMDTLNDLLAASDVISLH 225 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~--~V~~~dr~~~~~~----------~~~~~g~-~~~~sL~eLL~~sDvVil~ 225 (620)
.+...+|+|||.|.+|..+|-.|...|. ++..||.+..... ....... ....+ .+.+.+||+|+++
T Consensus 17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d-~~~~~~adiVVit 95 (160)
T d1i0za1 17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKD-YSVTANSKIVVVT 95 (160)
T ss_dssp CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSS-GGGGTTCSEEEEC
T ss_pred cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccc-hhhcccccEEEEe
Confidence 4567899999999999999999998887 9999998742211 0111111 12233 4567899999997
Q ss_pred ccCC--h-hhHh-hc--C-------HHHhhccCCCcEEEEcCCC
Q 007040 226 CAVT--D-ETIQ-II--N-------AECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 226 lPlT--~-~T~~-lI--~-------~~~L~~MK~gAiLINvgRG 256 (620)
.-.. + +++- ++ | ...+....|++++|+++..
T Consensus 96 Ag~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNP 139 (160)
T d1i0za1 96 AGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNP 139 (160)
T ss_dssp CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred cCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCc
Confidence 6432 2 1221 22 1 1244555789999998764
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.68 E-value=0.0011 Score=61.07 Aligned_cols=69 Identities=10% Similarity=0.083 Sum_probs=51.8
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCc-------eecCCHHhhhcCCcEEEEcccCC
Q 007040 161 RGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA-------RRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~-------~~~~sL~eLL~~sDvVil~lPlT 229 (620)
..++|.|+| .|.||+.+++.|...|++|.++.|++.........+. ...+++.+++..+|+|+.++...
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~~ 78 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTR 78 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEeccC
Confidence 357899999 7999999999999999999999987654332222222 12345678899999999988643
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.58 E-value=0.0014 Score=56.31 Aligned_cols=65 Identities=9% Similarity=0.079 Sum_probs=45.9
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCce--ecCCHH---hhhc--CCcEEEE
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR--RMDTLN---DLLA--ASDVISL 224 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~--~~~sL~---eLL~--~sDvVil 224 (620)
..+.+|||||-|..|+-+|..++.+|++|+++|++............. ...+.+ ++.. .+|+|+.
T Consensus 9 ~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~PA~~va~~~i~~~~~d~~~l~~~~~~~~~DviT~ 80 (111)
T d1kjqa2 9 PAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALRRVVELEKPHYIVP 80 (111)
T ss_dssp TTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCGGGGGSSEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCCchhhcCCeEEECCCCCHHHHHHHHHhhCCceEEE
Confidence 356689999999999999999999999999999987654422222111 123333 3332 4699974
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.44 E-value=0.00087 Score=61.05 Aligned_cols=37 Identities=14% Similarity=0.061 Sum_probs=33.7
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGK 197 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~ 197 (620)
.|.+|.|+|.|.||...+..++.+|+ +|++.|+++..
T Consensus 28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~ 65 (182)
T d1vj0a2 28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNR 65 (182)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHH
T ss_pred CCCEEEEECCCccchhheeccccccccccccccccccc
Confidence 68999999999999999999999998 89999987643
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=96.43 E-value=0.0049 Score=59.61 Aligned_cols=108 Identities=14% Similarity=0.144 Sum_probs=74.2
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCC--------CCc----------------cccCCceecCCHHh
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGK--------GKV----------------TFPSAARRMDTLND 214 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~--------~~~----------------~~~~g~~~~~sL~e 214 (620)
+|.|++|.|-|+|++|+.+|+.|...|++|++++..... .+. ....+.....+.++
T Consensus 28 ~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (242)
T d1v9la1 28 GIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDA 107 (242)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTG
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeCcch
Confidence 479999999999999999999999999999987643210 000 00011122223455
Q ss_pred hhc-CCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 215 LLA-ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 215 LL~-~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
++. .|||++-|.. .+.|+.+....|+ -.+++-.+-+++ ..++ .+.|.+..|.
T Consensus 108 i~~~~~DIliPcA~-----~~~I~~~~a~~i~-ak~IvegAN~p~-t~~a-~~~L~~rgI~ 160 (242)
T d1v9la1 108 IFKLDVDIFVPAAI-----ENVIRGDNAGLVK-ARLVVEGANGPT-TPEA-ERILYERGVV 160 (242)
T ss_dssp GGGCCCSEEEECSC-----SSCBCTTTTTTCC-CSEEECCSSSCB-CHHH-HHHHHTTTCE
T ss_pred hccccccEEeecch-----hccccHHHHHhcc-cCEEEecCCCCC-ChhH-HHHHHhCCeE
Confidence 543 6999997763 4588888888886 468888888886 5555 3777776665
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=96.40 E-value=0.0043 Score=55.05 Aligned_cols=93 Identities=17% Similarity=0.203 Sum_probs=58.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC----------ccccC--CceecCCHHhhhcCCcEEEEcccC-
Q 007040 163 LVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK----------VTFPS--AARRMDTLNDLLAASDVISLHCAV- 228 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~----------~~~~~--g~~~~~sL~eLL~~sDvVil~lPl- 228 (620)
++|+|||.|.+|..+|-.|...+. +++.+|....... ..... .+....+.+ .+++||+|+++...
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~-~~~~advvvitag~~ 80 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYA-DTANSDVIVVTSGAP 80 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGG-GGTTCSEEEECCSCC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHH-HhcCCCEEEEeeecc
Confidence 589999999999999998876665 8999998764222 00011 122234555 46899999999853
Q ss_pred -Ch-hhH-hhc--CH-------HHhhccCCCcEEEEcCCC
Q 007040 229 -TD-ETI-QII--NA-------ECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 229 -T~-~T~-~lI--~~-------~~L~~MK~gAiLINvgRG 256 (620)
.+ .++ .++ |. ..+....|.+++|+++-.
T Consensus 81 ~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtNP 120 (142)
T d1uxja1 81 RKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNP 120 (142)
T ss_dssp ---------CHHHHHHHHHHHHHHHGGGCTTCEEEECSSS
T ss_pred CCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCCc
Confidence 22 121 111 11 234455778999997653
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.39 E-value=0.0011 Score=58.16 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=32.1
Q ss_pred cEEEEE-eCChhhHHHHHHHhhCCCEEEEECCCCCC
Q 007040 163 LVLGIV-GRSASARALATRSLSFKMSVLYFDVPEGK 197 (620)
Q Consensus 163 ktVGII-GlG~IG~~vA~~LkafG~~V~~~dr~~~~ 197 (620)
++|+|| |.|.||+++|+.|...|++|.+++|++..
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~ 36 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEK 36 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence 579999 89999999999999999999999998643
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.37 E-value=0.0016 Score=59.40 Aligned_cols=107 Identities=11% Similarity=0.144 Sum_probs=67.3
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEEE-EECCCCCCCC-----ccccCCceecCCHHhhhc--CCcEEEEcccCChhhH
Q 007040 163 LVLGIVGRSASARALATRSLSF-KMSVL-YFDVPEGKGK-----VTFPSAARRMDTLNDLLA--ASDVISLHCAVTDETI 233 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-G~~V~-~~dr~~~~~~-----~~~~~g~~~~~sL~eLL~--~sDvVil~lPlT~~T~ 233 (620)
.++||||+|.||+..++.++.. +++|. ++|++..... ...+......++++++++ +.|+|++++|......
T Consensus 2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~~ 81 (184)
T d1ydwa1 2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVE 81 (184)
T ss_dssp EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhhcc
Confidence 3699999999999999999876 77877 4577653221 112223345678999985 4699999998653322
Q ss_pred hhcCHHHhhccCCCcE-EEEc-CCChhhcHHHHHHHHHcCCcc
Q 007040 234 QIINAECLQHIKPGAF-LVNT-GSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAi-LINv-gRG~vVDe~AL~~AL~~G~I~ 274 (620)
. ....|+.|.- ++.- .--.+-+.+.|.+..++.++.
T Consensus 82 ~-----~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~ 119 (184)
T d1ydwa1 82 W-----AIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQ 119 (184)
T ss_dssp H-----HHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCC
T ss_pred h-----hhhhhhccceeecccccccCHHHHHHHHHHHHhhCCE
Confidence 2 2233444433 3321 112344556688888777665
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.36 E-value=0.00094 Score=59.87 Aligned_cols=38 Identities=8% Similarity=0.038 Sum_probs=34.2
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKG 198 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~ 198 (620)
.|.+|.|+|.|.||...+..++.+|++|+++|++....
T Consensus 26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~ 63 (170)
T d1e3ja2 26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRL 63 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred CCCEEEEEcccccchhhHhhHhhhcccccccchHHHHH
Confidence 57789999999999999999999999999999886443
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=96.36 E-value=0.0041 Score=55.71 Aligned_cols=108 Identities=11% Similarity=0.062 Sum_probs=64.7
Q ss_pred cEEEEEeCChhhHH-HHHHHhhC-CCEEEEECCCCCCCCccc-cCCc-eecCCHHhhhc-CCcEEEEcccCChhhHhhcC
Q 007040 163 LVLGIVGRSASARA-LATRSLSF-KMSVLYFDVPEGKGKVTF-PSAA-RRMDTLNDLLA-ASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 163 ktVGIIGlG~IG~~-vA~~Lkaf-G~~V~~~dr~~~~~~~~~-~~g~-~~~~sL~eLL~-~sDvVil~lPlT~~T~~lI~ 237 (620)
.+|||||+|.+|+. .+..++.+ ++++.++|+++....... ..+. ....+.++++. +.|+|++++|.. ++--+-
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~--~H~~~~ 79 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATD--VHSTLA 79 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGG--GHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceeccccccc--cccccc
Confidence 47999999999976 56777666 668889998764332111 0111 23467777775 569999999955 333232
Q ss_pred HHHhhccCCCcEEEEc-CCChhhcHHHHHHHHHcCCcc
Q 007040 238 AECLQHIKPGAFLVNT-GSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 238 ~~~L~~MK~gAiLINv-gRG~vVDe~AL~~AL~~G~I~ 274 (620)
...+..=+ .+|+.- ---.+-+...|.++.++..+.
T Consensus 80 ~~al~~gk--~V~~EKP~~~~~~e~~~l~~~a~~~~~~ 115 (167)
T d1xeaa1 80 AFFLHLGI--PTFVDKPLAASAQECENLYELAEKHHQP 115 (167)
T ss_dssp HHHHHTTC--CEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred cccccccc--ccccCCCCcCCHHHHHHHHHHHHHcCCE
Confidence 33344322 255543 122334556677777665543
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.35 E-value=0.0016 Score=58.71 Aligned_cols=90 Identities=12% Similarity=0.094 Sum_probs=59.9
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCccccCCcee-----cCCHHhhh--------cCCcEEEEcc
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARR-----MDTLNDLL--------AASDVISLHC 226 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~~~g~~~-----~~sL~eLL--------~~sDvVil~l 226 (620)
.|.+|.|+|.|.||...+..++.+|+ +|++.|++....+.+...|... ..+..+.. ...|+|+-++
T Consensus 26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~ 105 (171)
T d1pl8a2 26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT 105 (171)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEecc
Confidence 47789999999999999999999999 8999998875443222222211 12232222 2468888877
Q ss_pred cCChhhHhhcCHHHhhccCCCcEEEEcCC
Q 007040 227 AVTDETIQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 227 PlT~~T~~lI~~~~L~~MK~gAiLINvgR 255 (620)
+.. .+ + ...++.+++|..++.+|-
T Consensus 106 G~~-~~---~-~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 106 GAE-AS---I-QAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp CCH-HH---H-HHHHHHSCTTCEEEECSC
T ss_pred CCc-hh---H-HHHHHHhcCCCEEEEEec
Confidence 632 22 1 235677888877777653
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.34 E-value=0.0008 Score=61.47 Aligned_cols=70 Identities=17% Similarity=0.158 Sum_probs=53.4
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-------cC---CceecCCHHhhhcCCcEEEEcccC
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF-------PS---AARRMDTLNDLLAASDVISLHCAV 228 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~-------~~---g~~~~~sL~eLL~~sDvVil~lPl 228 (620)
++.|+++.|||.|..+++++..|...| +|++++|+....+... .. ......+++..+..+|+|+++.|.
T Consensus 15 ~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp~ 93 (177)
T d1nvta1 15 RVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPI 93 (177)
T ss_dssp CCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCT
T ss_pred CcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCcc
Confidence 489999999999999999999998888 9999999865432110 00 012335677778899999999996
Q ss_pred C
Q 007040 229 T 229 (620)
Q Consensus 229 T 229 (620)
.
T Consensus 94 g 94 (177)
T d1nvta1 94 G 94 (177)
T ss_dssp T
T ss_pred c
Confidence 5
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=96.31 E-value=0.0037 Score=56.19 Aligned_cols=95 Identities=18% Similarity=0.262 Sum_probs=60.5
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC---------ccc--cCCceecCCHHhhhcCCcEEEEcccCC
Q 007040 162 GLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK---------VTF--PSAARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~---------~~~--~~g~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
..+|+|||.|.+|..+|..|..-+. ++..||....... ..+ ........+..+.+++||+|+++.-..
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag~~ 82 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGFT 82 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCSCS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEecccc
Confidence 3589999999999999988876555 8999998764322 000 011111223446778999999987643
Q ss_pred hh---h-----H-hhc--CH-------HHhhccCCCcEEEEcCCC
Q 007040 230 DE---T-----I-QII--NA-------ECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 230 ~~---T-----~-~lI--~~-------~~L~~MK~gAiLINvgRG 256 (620)
.. + + .++ |. +.+....|++++|+++..
T Consensus 83 ~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNP 127 (150)
T d1t2da1 83 KAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNP 127 (150)
T ss_dssp SCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSS
T ss_pred cCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc
Confidence 21 1 1 111 22 234555689999998764
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.30 E-value=0.0047 Score=53.13 Aligned_cols=100 Identities=14% Similarity=0.182 Sum_probs=72.6
Q ss_pred cEEEEEeC----ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 163 LVLGIVGR----SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 163 ktVGIIGl----G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
|+|+|||. |..|..+.+.|+.+|++|+.++|..... .|...+.++.++=..-|++++++|.. .+..++.
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i-----~G~~~y~sl~~lp~~~D~vvi~vp~~-~~~~~l~- 74 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----EGLKCYRSVRELPKDVDVIVFVVPPK-VGLQVAK- 74 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGSCTTCCEEEECSCHH-HHHHHHH-
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccc-----cCccccccchhccccceEEEEEeCHH-HHHHHHH-
Confidence 57999994 6789999999999999999999875321 36666789999988899999999933 3445554
Q ss_pred HHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 239 ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 239 ~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
+.+ .+...++++..|. ..+++.+.+++..+.
T Consensus 75 ~~~-~~g~k~v~~~~g~----~~~~~~~~a~~~gi~ 105 (116)
T d1y81a1 75 EAV-EAGFKKLWFQPGA----ESEEIRRFLEKAGVE 105 (116)
T ss_dssp HHH-HTTCCEEEECTTS----CCHHHHHHHHHHTCE
T ss_pred HHH-hcCCceEEeccch----hhHHHHHHHHHcCCE
Confidence 333 3455677776542 345667777766554
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=96.28 E-value=0.00077 Score=61.70 Aligned_cols=71 Identities=11% Similarity=0.063 Sum_probs=49.7
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc---cc--CCceecCCHHhhhcCCcEEEEcccCC
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT---FP--SAARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~---~~--~g~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
.+.|++|.|+|.|..|++++..|...+.+|++++|+....... +. .........+..+..+|+|+++.|..
T Consensus 15 ~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g 90 (171)
T d1p77a1 15 LRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAG 90 (171)
T ss_dssp CCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC-
T ss_pred CCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeeccccc
Confidence 4689999999999999999999998788999999986433211 10 01111111222357889999999966
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.25 E-value=0.002 Score=64.66 Aligned_cols=88 Identities=17% Similarity=0.205 Sum_probs=65.3
Q ss_pred CcEEEEEeCChhhHHHHHHHhh-CCC-EEEEECCCCCCCCcc----ccCCceecCCHHhhhcCCcEEEEcccCChhhHhh
Q 007040 162 GLVLGIVGRSASARALATRSLS-FKM-SVLYFDVPEGKGKVT----FPSAARRMDTLNDLLAASDVISLHCAVTDETIQI 235 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lka-fG~-~V~~~dr~~~~~~~~----~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~l 235 (620)
-+++||||.|..++.-++.+.. +.. +|.+|+|+....... ...+.....+..+.+..||+|+++.|. +..+
T Consensus 125 ~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~s---~~P~ 201 (320)
T d1omoa_ 125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTPS---RKPV 201 (320)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCCC---SSCC
T ss_pred ccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEeccC---cccc
Confidence 4579999999999999998874 565 899999987443211 112233445677888999999998774 4557
Q ss_pred cCHHHhhccCCCcEEEEcCC
Q 007040 236 INAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 236 I~~~~L~~MK~gAiLINvgR 255 (620)
|.. +.++||+.++.+|.
T Consensus 202 ~~~---~~l~~G~hv~~iGs 218 (320)
T d1omoa_ 202 VKA---EWVEEGTHINAIGA 218 (320)
T ss_dssp BCG---GGCCTTCEEEECSC
T ss_pred cch---hhcCCCCeEeecCC
Confidence 765 35899999999985
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.15 E-value=0.0032 Score=55.10 Aligned_cols=89 Identities=18% Similarity=0.202 Sum_probs=65.0
Q ss_pred eecCcEEEEEeC----------ChhhHHHHHHHhhCCCEEEEECCCCCCCCcc----------c-cCCceecCCHHhhhc
Q 007040 159 RCRGLVLGIVGR----------SASARALATRSLSFKMSVLYFDVPEGKGKVT----------F-PSAARRMDTLNDLLA 217 (620)
Q Consensus 159 ~L~GktVGIIGl----------G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~----------~-~~g~~~~~sL~eLL~ 217 (620)
.+.+++|||+|+ +.-...+++.|...|++|.+|||........ . ......+.++.+++.
T Consensus 10 ~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~ 89 (136)
T d1mv8a3 10 SHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVA 89 (136)
T ss_dssp TSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHH
T ss_pred hcCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhh
Confidence 357889999998 5678899999999999999999864211100 0 011234578999999
Q ss_pred CCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEc
Q 007040 218 ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNT 253 (620)
Q Consensus 218 ~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINv 253 (620)
.+|+|+++++... - .+....++++.++|++
T Consensus 90 ~~D~ivi~t~h~~-f-----~~l~~~~~~~~~I~D~ 119 (136)
T d1mv8a3 90 SSDVLVLGNGDEL-F-----VDLVNKTPSGKKLVDL 119 (136)
T ss_dssp HCSEEEECSCCGG-G-----HHHHHSCCTTCEEEES
T ss_pred hceEEEEEeCCHH-H-----HHHHHHhcCCCEEEEC
Confidence 9999999998652 1 2345567778899997
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=96.13 E-value=0.004 Score=55.58 Aligned_cols=92 Identities=14% Similarity=0.277 Sum_probs=59.4
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC---------cccc-C-CceecCCHHhhhcCCcEEEEcccCC
Q 007040 163 LVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK---------VTFP-S-AARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~--~V~~~dr~~~~~~---------~~~~-~-g~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
.+|+|||.|.+|..+|-.+...|. ++..+|....... ..+. . ......+. +.+++||+|+++.-..
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~-~~~~daDvVVitaG~~ 80 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVITAGPR 80 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTTCSEEEECCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCH-HHhhCCcEEEEecccc
Confidence 479999999999999999886665 8999998763221 0111 1 11223445 4578999999987532
Q ss_pred h---hh--------HhhcC--HHHhhccCCCcEEEEcCC
Q 007040 230 D---ET--------IQIIN--AECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 230 ~---~T--------~~lI~--~~~L~~MK~gAiLINvgR 255 (620)
. ++ ..++. ...+....|++++|+++-
T Consensus 81 ~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtN 119 (143)
T d1llda1 81 QKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITN 119 (143)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred cCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence 2 12 12221 134556678899999874
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.12 E-value=0.0034 Score=57.13 Aligned_cols=95 Identities=13% Similarity=0.127 Sum_probs=61.3
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC----------ccccCC-ceecCCHHhhhcCCcEEEEcc
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK----------VTFPSA-ARRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~--~V~~~dr~~~~~~----------~~~~~g-~~~~~sL~eLL~~sDvVil~l 226 (620)
+...+|+|||.|.+|..+|..|...|. ++..||.+..... ...... .....+. +.+..||+|+++.
T Consensus 17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~-~~~~~adivvita 95 (159)
T d2ldxa1 17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDY-NVSANSKLVIITA 95 (159)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSG-GGGTTEEEEEECC
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccch-hhhccccEEEEec
Confidence 556789999999999999999987776 8999998752211 011111 1233454 4558999999976
Q ss_pred cC--Ch-hhHh-hc--CHH-------HhhccCCCcEEEEcCC
Q 007040 227 AV--TD-ETIQ-II--NAE-------CLQHIKPGAFLVNTGS 255 (620)
Q Consensus 227 Pl--T~-~T~~-lI--~~~-------~L~~MK~gAiLINvgR 255 (620)
.. .+ +++. ++ |.+ .+....|++++|+++.
T Consensus 96 g~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtN 137 (159)
T d2ldxa1 96 GARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTN 137 (159)
T ss_dssp SCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSS
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence 43 22 1221 22 222 2334578999999987
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.09 E-value=0.0038 Score=55.74 Aligned_cols=94 Identities=15% Similarity=0.212 Sum_probs=61.2
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCC--EEEEECCCCCCCC-------cccc--CCceecCCHHhhhcCCcEEEEcccC--
Q 007040 163 LVLGIVG-RSASARALATRSLSFKM--SVLYFDVPEGKGK-------VTFP--SAARRMDTLNDLLAASDVISLHCAV-- 228 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG~--~V~~~dr~~~~~~-------~~~~--~g~~~~~sL~eLL~~sDvVil~lPl-- 228 (620)
.+|+||| .|.+|+.+|..|...|. ++..+|....... ..+. .......+..+.++.||+|+++.-.
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~ 80 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR 80 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCC
Confidence 3799999 59999999999997776 7999998653221 0010 0112234567888999999997653
Q ss_pred Ch-h--------hHhhcC--HHHhhccCCCcEEEEcCCC
Q 007040 229 TD-E--------TIQIIN--AECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 229 T~-~--------T~~lI~--~~~L~~MK~gAiLINvgRG 256 (620)
.+ + +..++. .+.+....|.+++|.++..
T Consensus 81 ~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtNP 119 (144)
T d1mlda1 81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNP 119 (144)
T ss_dssp CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSC
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc
Confidence 22 1 222221 1234455889999998764
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.05 E-value=0.0042 Score=55.26 Aligned_cols=93 Identities=17% Similarity=0.189 Sum_probs=60.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC----------ccccC--CceecCCHHhhhcCCcEEEEcccC
Q 007040 163 LVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK----------VTFPS--AARRMDTLNDLLAASDVISLHCAV 228 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~--~V~~~dr~~~~~~----------~~~~~--g~~~~~sL~eLL~~sDvVil~lPl 228 (620)
++|+|||.|.+|..+|-.|...|. ++..||....... ..... .+....+. +.+++||+|++....
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~-~~~~~adiVvitag~ 79 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY-SLLKGSEIIVVTAGL 79 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCG-GGGTTCSEEEECCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCH-HHhccccEEEEeccc
Confidence 589999999999999999886665 7999998753311 00111 12223344 678899999998743
Q ss_pred --Chh---------hHhhcC--HHHhhccCCCcEEEEcCCC
Q 007040 229 --TDE---------TIQIIN--AECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 229 --T~~---------T~~lI~--~~~L~~MK~gAiLINvgRG 256 (620)
++. +..++. .+.+....|.+++|+++-.
T Consensus 80 ~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtNP 120 (142)
T d1ojua1 80 ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNP 120 (142)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSS
T ss_pred cCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecCC
Confidence 221 112221 2345566788999999873
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.05 E-value=0.0015 Score=58.67 Aligned_cols=89 Identities=17% Similarity=0.169 Sum_probs=55.7
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCce---ecCC---HHhhhcCCcEEEEcccCChhhHh
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR---RMDT---LNDLLAASDVISLHCAVTDETIQ 234 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~---~~~s---L~eLL~~sDvVil~lPlT~~T~~ 234 (620)
.|.+|.|+|.|.||...++.++.+|+++++.+++....+.....|.. ...+ ........|+++.++......
T Consensus 30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~~~~-- 107 (168)
T d1uufa2 30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNL-- 107 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCCH--
T ss_pred CCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecchhH--
Confidence 58899999999999999999999999999999876543321222221 1111 122233467777666533211
Q ss_pred hcCHHHhhccCCCcEEEEcC
Q 007040 235 IINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 235 lI~~~~L~~MK~gAiLINvg 254 (620)
...+..++++..++.+|
T Consensus 108 ---~~~~~~l~~~G~iv~~G 124 (168)
T d1uufa2 108 ---DDFTTLLKRDGTMTLVG 124 (168)
T ss_dssp ---HHHHTTEEEEEEEEECC
T ss_pred ---HHHHHHHhcCCEEEEec
Confidence 22355666666666654
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.02 E-value=0.016 Score=57.61 Aligned_cols=136 Identities=7% Similarity=0.084 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCC
Q 007040 115 AEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVP 194 (620)
Q Consensus 115 a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~ 194 (620)
.++++--++..+-.++++....... .. ...|.|++|.|-|+|++|+.+|+.|...|++|++++.+
T Consensus 4 ~eATG~GV~~~~~~~l~~~~~~~~~-----gl----------~~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~ 68 (293)
T d1hwxa1 4 ISATGRGVFHGIENFIENASYMSIL-----GM----------TPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGES 68 (293)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHH-----TC----------CSSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEET
T ss_pred chHhHHHHHHHHHHHHHhcccchhc-----cC----------CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcc
Confidence 4566666666666666654322221 00 02489999999999999999999999999999987643
Q ss_pred CCCC--------Cc----------cccCCceecCCHHhhhc-CCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCC
Q 007040 195 EGKG--------KV----------TFPSAARRMDTLNDLLA-ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 195 ~~~~--------~~----------~~~~g~~~~~sL~eLL~-~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgR 255 (620)
.... .. ........ .+.++++. .|||++-|. +.+.|+.+....++ -.+++-.+-
T Consensus 69 ~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~-~~~~~~~~~~~DIliPaA-----~~~~I~~~~a~~l~-ak~I~EgAN 141 (293)
T d1hwxa1 69 DGSIWNPDGIDPKELEDFKLQHGTILGFPKAK-IYEGSILEVDCDILIPAA-----SEKQLTKSNAPRVK-AKIIAEGAN 141 (293)
T ss_dssp TEEECCTTCCCHHHHHHHHHTTSSSTTCTTSC-BCCSCGGGCCCSEEEECS-----SSSCBCTTTGGGCC-CSEEECCSS
T ss_pred chhhccccccchHHHHHHHHHcCCeecccccc-cCCcccccCCccEEeecc-----ccccccHHHHHHHh-hCEEeccCC
Confidence 2100 00 00000001 11233433 799998664 45688888888886 447788888
Q ss_pred ChhhcHHHHHHHHHcCCcc
Q 007040 256 SQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 256 G~vVDe~AL~~AL~~G~I~ 274 (620)
+++- .+| .+.|.+..|.
T Consensus 142 ~P~t-~eA-~~~L~~~gI~ 158 (293)
T d1hwxa1 142 GPTT-PQA-DKIFLERNIM 158 (293)
T ss_dssp SCBC-HHH-HHHHHHTTCE
T ss_pred CCCC-cch-HHHHHHCCCE
Confidence 8864 344 3556665554
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=95.92 E-value=0.0043 Score=56.14 Aligned_cols=90 Identities=14% Similarity=0.172 Sum_probs=57.9
Q ss_pred cEEEEEeCChhhHH-HHHHHhhCC-CEEEE-ECCCCCCCC--ccccCCce-ecCCHHhhh-----cCCcEEEEcccCChh
Q 007040 163 LVLGIVGRSASARA-LATRSLSFK-MSVLY-FDVPEGKGK--VTFPSAAR-RMDTLNDLL-----AASDVISLHCAVTDE 231 (620)
Q Consensus 163 ktVGIIGlG~IG~~-vA~~LkafG-~~V~~-~dr~~~~~~--~~~~~g~~-~~~sL~eLL-----~~sDvVil~lPlT~~ 231 (620)
.++||||.|.||+. +.+.++.+. .++.+ .+++..... .+...+.. ...++++++ .+.|+|+.++|....
T Consensus 5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag~h 84 (157)
T d1nvmb1 5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASAH 84 (157)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHHH
T ss_pred cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCchhH
Confidence 57999999999986 678887664 46655 466653221 11122332 233455554 367999999995433
Q ss_pred hHhhcCHHHhhccCCCcEEEEcCC
Q 007040 232 TIQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 232 T~~lI~~~~L~~MK~gAiLINvgR 255 (620)
.. .+..+...+.|.++|+-+.
T Consensus 85 ~~---~~~~~~aa~~G~~VID~s~ 105 (157)
T d1nvmb1 85 VQ---NEALLRQAKPGIRLIDLTP 105 (157)
T ss_dssp HH---HHHHHHHHCTTCEEEECST
T ss_pred HH---hHHHHHHHHcCCEEEEccc
Confidence 33 2345667899999999875
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=95.88 E-value=0.011 Score=56.90 Aligned_cols=111 Identities=17% Similarity=0.125 Sum_probs=76.1
Q ss_pred eecCcEEEEEeCChhhHHHHHHHh-hCCCEEEEECCCCCC------CC--------------ccccCCceecCCHHhhhc
Q 007040 159 RCRGLVLGIVGRSASARALATRSL-SFKMSVLYFDVPEGK------GK--------------VTFPSAARRMDTLNDLLA 217 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~Lk-afG~~V~~~dr~~~~------~~--------------~~~~~g~~~~~sL~eLL~ 217 (620)
++.|++|.|-|+|++|+.+|+.|. .+|++|++++.+... .. ..+ .+... .+.++++.
T Consensus 28 ~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~-~~~~~-~~~~~~~~ 105 (234)
T d1b26a1 28 DPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTY-PKGER-ITNEELLE 105 (234)
T ss_dssp CTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTC-SSCEE-ECHHHHHT
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceecc-cccee-eccccccc
Confidence 478999999999999999999995 789999987633210 00 001 11122 24566766
Q ss_pred -CCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 218 -ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 218 -~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
.|||++-|. ..+.|+.+....++- .+++-.+-+++-. ++ .+.|.+..|. .+=|.
T Consensus 106 ~~~DI~~PcA-----~~~~I~~~~a~~l~~-~~I~e~AN~p~t~-~a-~~~L~~rgI~-~~PD~ 160 (234)
T d1b26a1 106 LDVDILVPAA-----LEGAIHAGNAERIKA-KAVVEGANGPTTP-EA-DEILSRRGIL-VVPDI 160 (234)
T ss_dssp SCCSEEEECS-----CTTCBCHHHHTTCCC-SEEECCSSSCBCH-HH-HHHHHHTTCE-EECHH
T ss_pred cccceeecch-----hcccccHHHHHHhhh-ceEeecCCCCCCH-HH-HHHHHHCCeE-EechH
Confidence 799998664 456899999999984 5788888888744 34 4667776665 34443
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.87 E-value=0.0021 Score=56.96 Aligned_cols=38 Identities=3% Similarity=-0.018 Sum_probs=35.1
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
.+|.|+++.|||-|.+|..-|+.|..+|++|+++++..
T Consensus 9 ~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~~ 46 (150)
T d1kyqa1 9 HQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL 46 (150)
T ss_dssp ECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred eeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 46899999999999999999999999999999997653
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=95.76 E-value=0.0053 Score=55.48 Aligned_cols=105 Identities=15% Similarity=0.136 Sum_probs=64.5
Q ss_pred cEEEEEeCChhhHHHHHHHh-----hC-CCEEEEECCCCCCCC---------ccccCCceecCCHHhhhcCCcEEEEccc
Q 007040 163 LVLGIVGRSASARALATRSL-----SF-KMSVLYFDVPEGKGK---------VTFPSAARRMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lk-----af-G~~V~~~dr~~~~~~---------~~~~~g~~~~~sL~eLL~~sDvVil~lP 227 (620)
++|.|||.|.+|...+-... .+ +-++..+|....... ...........+..+.++.||+|++++-
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~ 80 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR 80 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecc
Confidence 47999999999977764322 12 358999998764322 0111222344678899999999999876
Q ss_pred CCh-----------hhHhhcCH---------------------HHhhccCCCcEEEEcCCChhhcHHHHHHH
Q 007040 228 VTD-----------ETIQIINA---------------------ECLQHIKPGAFLVNTGSSQLLDDCAVKQL 267 (620)
Q Consensus 228 lT~-----------~T~~lI~~---------------------~~L~~MK~gAiLINvgRG~vVDe~AL~~A 267 (620)
... .+.+++.. ..+....|++++||++-.--+-..++.+.
T Consensus 81 ~~~~~~~~r~~~i~~~~~i~~~~~~g~~g~~~~~r~~~~~~~i~~~~~~~p~a~~i~vtNPvdiit~~~~~~ 152 (162)
T d1up7a1 81 PGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTSNATIVNFTNPSGHITEFVRNY 152 (162)
T ss_dssp TTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHHHT
T ss_pred cCCCCCcchHhhhhhhcCeeeeeccCcchhhhhhhhhHHHHHHhhhhccCCCeEEEEeCCHHHHHHHHHHHh
Confidence 431 12233211 12233468999999988744444444443
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=95.67 E-value=0.023 Score=49.81 Aligned_cols=103 Identities=13% Similarity=0.187 Sum_probs=73.3
Q ss_pred cCcEEEEEeC----ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhc
Q 007040 161 RGLVLGIVGR----SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII 236 (620)
Q Consensus 161 ~GktVGIIGl----G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI 236 (620)
.-++|+|||. +..|..+++.|+.+|++++.|.++..... -.|...+.++.++-..-|+|++++| .+.+..++
T Consensus 12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~~---i~g~~~~~~l~~i~~~iD~v~v~~p-~~~v~~~v 87 (136)
T d1iuka_ 12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEE---LFGEEAVASLLDLKEPVDILDVFRP-PSALMDHL 87 (136)
T ss_dssp HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSE---ETTEECBSSGGGCCSCCSEEEECSC-HHHHTTTH
T ss_pred CCCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccce---eeceecccchhhccCCCceEEEecc-HHHHHHHH
Confidence 4578999997 78999999999999999999998763322 2455667789999888999999999 33445555
Q ss_pred CHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCc
Q 007040 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTL 273 (620)
Q Consensus 237 ~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I 273 (620)
.+ . ..+...++++..| ..+++ +.+..++..|
T Consensus 88 ~~-~-~~~g~k~i~~q~G---~~~~e-~~~~a~~~Gi 118 (136)
T d1iuka_ 88 PE-V-LALRPGLVWLQSG---IRHPE-FEKALKEAGI 118 (136)
T ss_dssp HH-H-HHHCCSCEEECTT---CCCHH-HHHHHHHTTC
T ss_pred HH-H-HhhCCCeEEEecC---ccCHH-HHHHHHHcCC
Confidence 43 2 3456678888765 23444 4444444444
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.63 E-value=0.0095 Score=52.06 Aligned_cols=107 Identities=8% Similarity=0.138 Sum_probs=73.6
Q ss_pred ecCcEEEEEeC----ChhhHHHHHHHhhCC-CEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHh
Q 007040 160 CRGLVLGIVGR----SASARALATRSLSFK-MSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQ 234 (620)
Q Consensus 160 L~GktVGIIGl----G~IG~~vA~~LkafG-~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~ 234 (620)
++-++|+|||. |..|..+.+.|+..| .+|+.++|.... -.|...+.+|.++=..-|++++++| .+.+..
T Consensus 6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~-----i~G~~~y~sl~dlp~~vDlvvi~vp-~~~~~~ 79 (129)
T d2csua1 6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEE-----VQGVKAYKSVKDIPDEIDLAIIVVP-KRFVKD 79 (129)
T ss_dssp TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSE-----ETTEECBSSTTSCSSCCSEEEECSC-HHHHHH
T ss_pred CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccc-----cCCeEeecchhhcCCCCceEEEecC-hHHhHH
Confidence 46688999996 899999999999766 699999987633 2466777899999888999999999 334555
Q ss_pred hcCHHHhhccCCCcEEEEcCCCh-----hhcHHHHHHHHHcCCc
Q 007040 235 IINAECLQHIKPGAFLVNTGSSQ-----LLDDCAVKQLLIDGTL 273 (620)
Q Consensus 235 lI~~~~L~~MK~gAiLINvgRG~-----vVDe~AL~~AL~~G~I 273 (620)
++. +..+.--++++++-.|-++ ...+++|.+..++..+
T Consensus 80 ~~~-~~~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~gi 122 (129)
T d2csua1 80 TLI-QCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGM 122 (129)
T ss_dssp HHH-HHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTC
T ss_pred HHH-HHHHcCCCEEEEecccccccchhhHHHHHHHHHHHHHcCC
Confidence 653 3333333345555444333 2344556666665444
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.56 E-value=0.008 Score=53.09 Aligned_cols=90 Identities=12% Similarity=0.181 Sum_probs=61.0
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceec-----CC----HHhhhcCCcEEEEcccCChh
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRM-----DT----LNDLLAASDVISLHCAVTDE 231 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~-----~s----L~eLL~~sDvVil~lPlT~~ 231 (620)
.|.+|.|+|.|.||...+..++.+|.+|++.+++..........|.... .+ +.+.....|.++.+.+ .+.
T Consensus 27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~ 105 (168)
T d1rjwa2 27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAV-SKP 105 (168)
T ss_dssp TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSC-CHH
T ss_pred CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecC-CHH
Confidence 5889999999999999999999999999999987654432222222111 12 3344455677776654 343
Q ss_pred hHhhcCHHHhhccCCCcEEEEcCC
Q 007040 232 TIQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 232 T~~lI~~~~L~~MK~gAiLINvgR 255 (620)
+. ...+..++++..++.+|-
T Consensus 106 ~~----~~a~~~l~~~G~i~~~g~ 125 (168)
T d1rjwa2 106 AF----QSAYNSIRRGGACVLVGL 125 (168)
T ss_dssp HH----HHHHHHEEEEEEEEECCC
T ss_pred HH----HHHHHHhccCCceEeccc
Confidence 32 346777888888888763
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.52 E-value=0.039 Score=49.49 Aligned_cols=96 Identities=15% Similarity=0.150 Sum_probs=65.8
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccc-----------cCCceecCCHHhhhcCCcEEEEcc
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTF-----------PSAARRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~-----------~~g~~~~~sL~eLL~~sDvVil~l 226 (620)
+|.|++|++||=|+ +..+++..|..||++|..+.|..-...... ........++++.+..+|+|..-.
T Consensus 1 sl~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~~~ 80 (163)
T d1pvva2 1 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV 80 (163)
T ss_dssp CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred CcCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEeecc
Confidence 37899999999754 668888899999999999998642222100 012345678999999999999743
Q ss_pred cCC-------hh-----hHhhcCHHHhhccCCCcEEEEcC
Q 007040 227 AVT-------DE-----TIQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 227 PlT-------~~-----T~~lI~~~~L~~MK~gAiLINvg 254 (620)
=.. +. ..-.++.+.++.+|++++|.-+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~y~v~~~~l~~ak~~~iimHpl 120 (163)
T d1pvva2 81 WASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCL 120 (163)
T ss_dssp CCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECS
T ss_pred eeecccchhhHHHHHHhhhhhHHHHHHHhhCCCeEEecCC
Confidence 111 11 11245778888888888777653
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.43 E-value=0.0037 Score=55.66 Aligned_cols=37 Identities=16% Similarity=0.233 Sum_probs=33.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGK 197 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~ 197 (620)
.|.+|.|+|.|.||...+..++.+|++|++.++++..
T Consensus 27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~ 63 (166)
T d1llua2 27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAK 63 (166)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred CCCEEEEeeccccHHHHHHHHHHcCCccceecchhhH
Confidence 5889999999999999999999999999999987643
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.43 E-value=0.032 Score=49.28 Aligned_cols=101 Identities=11% Similarity=0.107 Sum_probs=71.4
Q ss_pred cCcEEEEEeC----ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhc
Q 007040 161 RGLVLGIVGR----SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII 236 (620)
Q Consensus 161 ~GktVGIIGl----G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI 236 (620)
.-++|+|||. |..|..+++.|+.+|++|+.++|.... -.|...+.++.++-..-|+|++++|.. .+..++
T Consensus 18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~-----i~G~~~~~sl~dlp~~iD~v~i~vp~~-~~~~~~ 91 (139)
T d2d59a1 18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEE-----VLGRKCYPSVLDIPDKIEVVDLFVKPK-LTMEYV 91 (139)
T ss_dssp HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE-----ETTEECBSSGGGCSSCCSEEEECSCHH-HHHHHH
T ss_pred cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccc-----cCCCcccccccccCccceEEEEEeCHH-HHHHHH
Confidence 4678999996 579999999999999999999987532 135666789999988999999999933 333444
Q ss_pred CHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCc
Q 007040 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTL 273 (620)
Q Consensus 237 ~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I 273 (620)
. +.+ .+...++++..|- .+++ +.+.+++..+
T Consensus 92 ~-e~~-~~g~k~v~~~~G~---~~ee-~~~~a~~~gi 122 (139)
T d2d59a1 92 E-QAI-KKGAKVVWFQYNT---YNRE-ASKKADEAGL 122 (139)
T ss_dssp H-HHH-HHTCSEEEECTTC---CCHH-HHHHHHHTTC
T ss_pred H-HHH-HhCCCEEEEeccc---cCHH-HHHHHHHCCC
Confidence 3 233 3456678887663 3443 4444454444
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=95.39 E-value=0.0031 Score=57.12 Aligned_cols=67 Identities=9% Similarity=0.086 Sum_probs=47.3
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCccc-cCCceecCCHHhhhcCCcEEEEcccCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTF-PSAARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~-~~g~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
.+++|.|||.|..|++++..|...|+ +|.+++|+........ ..+......+. ..++|+||++.|..
T Consensus 16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~~--~~~~DliINaTpiG 84 (167)
T d1npya1 16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIG 84 (167)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTT
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhccc--ccchhhheeccccC
Confidence 57889999999999999999999998 7999999875432110 01122222222 25688999888853
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=95.38 E-value=0.0026 Score=57.95 Aligned_cols=38 Identities=8% Similarity=-0.126 Sum_probs=33.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKG 198 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~ 198 (620)
.|.+|.|+|.|.||...++.++.+|+ +|++.|++....
T Consensus 27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~ 65 (174)
T d1jqba2 27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICV 65 (174)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHH
T ss_pred CCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhH
Confidence 58889999999999999999999998 799999876443
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=95.36 E-value=0.009 Score=48.24 Aligned_cols=34 Identities=12% Similarity=0.159 Sum_probs=32.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
|+|||||-|-.|+-++..+..+|++|+++|+...
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~ 35 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE 35 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence 6899999999999999999999999999998763
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.36 E-value=0.0072 Score=55.80 Aligned_cols=66 Identities=14% Similarity=0.125 Sum_probs=43.4
Q ss_pred EEEEEeCChhhHHHHHHHhhC-CCEEEEECCCCCCCCc------------------c-ccCCceecCCHHhhhcCCcEEE
Q 007040 164 VLGIVGRSASARALATRSLSF-KMSVLYFDVPEGKGKV------------------T-FPSAARRMDTLNDLLAASDVIS 223 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~Lkaf-G~~V~~~dr~~~~~~~------------------~-~~~g~~~~~sL~eLL~~sDvVi 223 (620)
+|||.|+|+||+.+++.+... +++|.+++........ . ...+......+.+++..+|+|+
T Consensus 3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiVi 82 (178)
T d1b7go1 3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV 82 (178)
T ss_dssp EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEEE
Confidence 699999999999999999865 6788887543211110 0 0011122335677777888888
Q ss_pred EcccCC
Q 007040 224 LHCAVT 229 (620)
Q Consensus 224 l~lPlT 229 (620)
-|.|.-
T Consensus 83 ecTG~f 88 (178)
T d1b7go1 83 DTTPNG 88 (178)
T ss_dssp ECCSTT
T ss_pred ECCCCc
Confidence 888854
|
| >d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.35 E-value=0.034 Score=49.37 Aligned_cols=94 Identities=14% Similarity=0.310 Sum_probs=61.0
Q ss_pred ecCcEEEEEeC---ChhhHHHHHHHhhCCCEEEEECCCCC-CCC----ccccCCceecCCHHhhhcCCcEEEEcccCCh-
Q 007040 160 CRGLVLGIVGR---SASARALATRSLSFKMSVLYFDVPEG-KGK----VTFPSAARRMDTLNDLLAASDVISLHCAVTD- 230 (620)
Q Consensus 160 L~GktVGIIGl---G~IG~~vA~~LkafG~~V~~~dr~~~-~~~----~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~- 230 (620)
|.|.+|+|||= |++..+++..+..||+++.++-+... ... ......+....++++.+..+|+|...--...
T Consensus 1 l~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~~~q~~~ 80 (153)
T d1pg5a2 1 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKER 80 (153)
T ss_dssp STTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCSTT
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEeeeeehh
Confidence 46899999997 45899999999999998766554321 111 1112234566789999999999875321110
Q ss_pred -----h-----hHhhcCHHHhhccCCCcEEEEc
Q 007040 231 -----E-----TIQIINAECLQHIKPGAFLVNT 253 (620)
Q Consensus 231 -----~-----T~~lI~~~~L~~MK~gAiLINv 253 (620)
+ ..-.++.+.++.++++++|.-+
T Consensus 81 ~~~~~~~~~~~~~y~v~~~~l~~~~~~~i~mH~ 113 (153)
T d1pg5a2 81 FVDEMEYEKIKGSYIVSLDLANKMKKDSIILHP 113 (153)
T ss_dssp SSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECC
T ss_pred ccchhHHHHHHHhhhhhHHHHhccCCCeEEecC
Confidence 0 1112466677777777666654
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=95.34 E-value=0.0037 Score=56.50 Aligned_cols=87 Identities=16% Similarity=0.116 Sum_probs=56.2
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceec---CCH-Hh--hhcCCcEEEEcccCChhhH
Q 007040 161 RGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRM---DTL-ND--LLAASDVISLHCAVTDETI 233 (620)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~---~sL-~e--LL~~sDvVil~lPlT~~T~ 233 (620)
.|.+|.|.|. |.+|....+.++.+|++|++.++++...+.....|.... .+. ++ ....+|+|+-+...+
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G~~---- 102 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRGKE---- 102 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSCTT----
T ss_pred CCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhhccccccccccccchh----
Confidence 5888999995 999999999999999999999987654432222333211 111 11 123467777755411
Q ss_pred hhcCHHHhhccCCCcEEEEcC
Q 007040 234 QIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvg 254 (620)
+ ...++.++++..+|.+|
T Consensus 103 --~-~~~~~~l~~~G~~v~~G 120 (171)
T d1iz0a2 103 --V-EESLGLLAHGGRLVYIG 120 (171)
T ss_dssp --H-HHHHTTEEEEEEEEEC-
T ss_pred --H-HHHHHHHhcCCcEEEEe
Confidence 1 34567777777777765
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=95.29 E-value=0.018 Score=52.37 Aligned_cols=66 Identities=15% Similarity=0.222 Sum_probs=45.2
Q ss_pred CcEEEEEeCChhhHHHHH---HHh--hC-CCEEEEECCCCCCCC----------cc--ccCCceecCCHHhhhcCCcEEE
Q 007040 162 GLVLGIVGRSASARALAT---RSL--SF-KMSVLYFDVPEGKGK----------VT--FPSAARRMDTLNDLLAASDVIS 223 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~---~Lk--af-G~~V~~~dr~~~~~~----------~~--~~~g~~~~~sL~eLL~~sDvVi 223 (620)
.++|+|||.|.+|...+- .++ .+ +-++..+|..+...+ .. ....+....++++.+..||+|+
T Consensus 2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv 81 (171)
T d1obba1 2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI 81 (171)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEe
Confidence 468999999999976432 332 33 459999999864322 00 1122345578999999999999
Q ss_pred Eccc
Q 007040 224 LHCA 227 (620)
Q Consensus 224 l~lP 227 (620)
+..-
T Consensus 82 ~~~~ 85 (171)
T d1obba1 82 NTAM 85 (171)
T ss_dssp ECCC
T ss_pred eecc
Confidence 8764
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.26 E-value=0.027 Score=50.42 Aligned_cols=104 Identities=15% Similarity=0.072 Sum_probs=60.8
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCC----CEEEEECCCCCCCCccccCCceecCCHHhhhcC--CcEEEEcccCChhhHhh
Q 007040 162 GLVLGIVGRSASARALATRSLSFK----MSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAA--SDVISLHCAVTDETIQI 235 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG----~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~--sDvVil~lPlT~~T~~l 235 (620)
-.+|||||+|.||+..++.++... ..+...+...... . .......++++++.. .|+|++++|.. ++.-
T Consensus 7 k~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~e~l~~~~iD~V~I~tp~~--~H~~ 80 (172)
T d1lc0a1 7 KFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELG---S-LDEVRQISLEDALRSQEIDVAYICSESS--SHED 80 (172)
T ss_dssp SEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCC---E-ETTEEBCCHHHHHHCSSEEEEEECSCGG--GHHH
T ss_pred CcEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchHHHH---H-hhccCcCCHHHHHhCCCcchhhhccccc--cccc
Confidence 347999999999999988887543 3444433222111 1 112234589999874 58899999954 4333
Q ss_pred cCHHHhhccCCCcEEEEcC-CChhhcHHHHHHHHHcCCc
Q 007040 236 INAECLQHIKPGAFLVNTG-SSQLLDDCAVKQLLIDGTL 273 (620)
Q Consensus 236 I~~~~L~~MK~gAiLINvg-RG~vVDe~AL~~AL~~G~I 273 (620)
+-...++.=+ .+|+.-= --.+-+.++|.++.++..+
T Consensus 81 ~~~~al~~gk--~V~~EKP~a~~~~e~~~l~~~a~~~~~ 117 (172)
T d1lc0a1 81 YIRQFLQAGK--HVLVEYPMTLSFAAAQELWELAAQKGR 117 (172)
T ss_dssp HHHHHHHTTC--EEEEESCSCSCHHHHHHHHHHHHHTTC
T ss_pred ccccccccch--hhhcCCCccccHHHHHHHHHHHHHcCC
Confidence 3333444333 3555531 2245566677776655444
|
| >d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.05 E-value=0.027 Score=47.52 Aligned_cols=63 Identities=10% Similarity=0.125 Sum_probs=49.7
Q ss_pred CcEEEEEeC----------ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcc
Q 007040 162 GLVLGIVGR----------SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 162 GktVGIIGl----------G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~l 226 (620)
.++|||+|+ ..-.-.+.+.|...|++|.+|||...... ...+.....++++++..||+|++..
T Consensus 15 ~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~--~~~~~~~~~~l~~~~~~sDiII~~~ 87 (108)
T d1dlja3 15 VKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLE--SEDQSVLVNDLENFKKQANIIVTNR 87 (108)
T ss_dssp SCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCC--TTCCSEECCCHHHHHHHCSEEECSS
T ss_pred CCEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhH--hccCCEEEeCHHHHHhhCCEEEEcC
Confidence 458999998 46678899999999999999999985533 2234555679999999999877543
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=95.05 E-value=0.022 Score=50.52 Aligned_cols=93 Identities=17% Similarity=0.272 Sum_probs=58.0
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCC--EEEEECCCCCCCC-----------ccccCCc-eecCCHHhhhcCCcEEEEccc
Q 007040 163 LVLGIVG-RSASARALATRSLSFKM--SVLYFDVPEGKGK-----------VTFPSAA-RRMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG~--~V~~~dr~~~~~~-----------~~~~~g~-~~~~sL~eLL~~sDvVil~lP 227 (620)
.+|+||| .|.+|+.+|-.+...|. ++..||....... ..+.... ....+. +.+..||+|+++.-
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~-~~~~~aDiVvitaG 79 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY-EDTAGSDVVVITAG 79 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCG-GGGTTCSEEEECCC
T ss_pred CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCH-HHhhhcCEEEEecc
Confidence 3799999 69999999999987666 8999996421100 0111111 122344 44689999999754
Q ss_pred --CChh-h--------HhhcC--HHHhhccCCCcEEEEcCCC
Q 007040 228 --VTDE-T--------IQIIN--AECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 228 --lT~~-T--------~~lI~--~~~L~~MK~gAiLINvgRG 256 (620)
..+. + ..++. .+.+....|++++|.++..
T Consensus 80 ~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtNP 121 (142)
T d1o6za1 80 IPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNP 121 (142)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSS
T ss_pred cccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecCh
Confidence 2221 2 22221 2345667788999998653
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.03 E-value=0.048 Score=52.37 Aligned_cols=106 Identities=21% Similarity=0.295 Sum_probs=70.7
Q ss_pred eecCcEEEEEeCChhhHHHHHHHh-hCCCEEEEECCCCCCC--------------------CccccCCceecCCHHhhh-
Q 007040 159 RCRGLVLGIVGRSASARALATRSL-SFKMSVLYFDVPEGKG--------------------KVTFPSAARRMDTLNDLL- 216 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~Lk-afG~~V~~~dr~~~~~--------------------~~~~~~g~~~~~sL~eLL- 216 (620)
.|.|++|.|-|+|++|..+|+.|. .+|++|++..-..... ...++ +.... +.++++
T Consensus 29 ~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~-~~~~~-~~~~i~~ 106 (239)
T d1gtma1 29 TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFP-GATNI-TNEELLE 106 (239)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCT-TSEEE-CHHHHHH
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCC-CCeee-ccccccc
Confidence 489999999999999999999985 6899998775332100 00111 22222 344554
Q ss_pred cCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 217 AASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 217 ~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
..|||++-|.- .+.|+.+....++ -.+++-.+-+++-. ++ .+.|.+..|.
T Consensus 107 ~~~DIl~PcA~-----~~~I~~~~a~~i~-ak~I~e~AN~p~t~-ea-~~~L~~rgI~ 156 (239)
T d1gtma1 107 LEVDVLAPAAI-----EEVITKKNADNIK-AKIVAEVANGPVTP-EA-DEILFEKGIL 156 (239)
T ss_dssp SCCSEEEECSC-----SCCBCTTGGGGCC-CSEEECCSSSCBCH-HH-HHHHHHTTCE
T ss_pred ccccEEeeccc-----cccccHHHHHhcc-ccEEEecCCCCCCH-HH-HHHHHHCCCE
Confidence 46999987664 4688888888886 45778888888643 34 4666665554
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=94.99 E-value=0.023 Score=50.55 Aligned_cols=94 Identities=13% Similarity=0.144 Sum_probs=58.4
Q ss_pred cEEEEEeC-ChhhHHHHHHHh---hCCCEEEEECCCCCCCC-------ccccCCc--eecCCHHhhhcCCcEEEEcccC-
Q 007040 163 LVLGIVGR-SASARALATRSL---SFKMSVLYFDVPEGKGK-------VTFPSAA--RRMDTLNDLLAASDVISLHCAV- 228 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~Lk---afG~~V~~~dr~~~~~~-------~~~~~g~--~~~~sL~eLL~~sDvVil~lPl- 228 (620)
++|+|||. |.+|..+|-.|. .++-++..+|..+.... ....... ....+..+.+++||+|+++.-.
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~~ 80 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVR 80 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSCC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCcc
Confidence 57999994 999999998764 35679999997542100 0011111 1112334568899999998743
Q ss_pred -Chh---------hHhhcC--HHHhhccCCCcEEEEcCCC
Q 007040 229 -TDE---------TIQIIN--AECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 229 -T~~---------T~~lI~--~~~L~~MK~gAiLINvgRG 256 (620)
.+. +..++- .+.+....|++++|.++..
T Consensus 81 ~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtNP 120 (145)
T d2cmda1 81 RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120 (145)
T ss_dssp CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSS
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccCC
Confidence 222 222221 2355566789999999764
|
| >d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.86 E-value=0.047 Score=48.96 Aligned_cols=95 Identities=7% Similarity=0.021 Sum_probs=64.2
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcc-----------ccCCceecCCHHhhhcCCcEEEEcc
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVT-----------FPSAARRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~-----------~~~g~~~~~sL~eLL~~sDvVil~l 226 (620)
+|.|++|+|||=|+ +..+++..+..||+++.++.|........ ....+....++++.+..+|+|....
T Consensus 1 sl~gl~I~~vGD~~nV~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~advi~~~~ 80 (170)
T d1otha2 1 SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDT 80 (170)
T ss_dssp CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred CCCCCEEEEEcCchhHHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHHHhccCCEEEEEcCHHHHHhhhhheeeec
Confidence 37899999999764 44666666778999999999864332210 0112345678999999999999876
Q ss_pred cCChhh------------HhhcCHHHhhccCCCcEEEEc
Q 007040 227 AVTDET------------IQIINAECLQHIKPGAFLVNT 253 (620)
Q Consensus 227 PlT~~T------------~~lI~~~~L~~MK~gAiLINv 253 (620)
-..... ...++.+.++.++++++|.-+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~MHp 119 (170)
T d1otha2 81 WISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHC 119 (170)
T ss_dssp SSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEEC
T ss_pred eecccchhhhHHHHHHHhhhhhhhhhhhccCCceEEecC
Confidence 543221 122566677777777777665
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.86 E-value=0.012 Score=52.74 Aligned_cols=89 Identities=17% Similarity=0.136 Sum_probs=54.1
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCce-----ecCCHHhhh------cCCcEEEEcccC
Q 007040 161 RGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR-----RMDTLNDLL------AASDVISLHCAV 228 (620)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~-----~~~sL~eLL------~~sDvVil~lPl 228 (620)
.|.+|.|.| .|.+|...++.++.+|++|++..++....+.....|.. ...++.+-+ ...|+|+.++..
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~~g~ 104 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAG 104 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCCT
T ss_pred CCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccccccccCCccCHHHHHHHHhCCCCEEEEEecccc
Confidence 478899988 59999999999999999999988765322211111111 111222221 236777766652
Q ss_pred ChhhHhhcCHHHhhccCCCcEEEEcCC
Q 007040 229 TDETIQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 229 T~~T~~lI~~~~L~~MK~gAiLINvgR 255 (620)
++ + ...++.|+++..+|++|.
T Consensus 105 --~~---~-~~~~~~l~~~G~~v~~G~ 125 (183)
T d1pqwa_ 105 --EA---I-QRGVQILAPGGRFIELGK 125 (183)
T ss_dssp --HH---H-HHHHHTEEEEEEEEECSC
T ss_pred --hH---H-HHHHHHhcCCCEEEEEcc
Confidence 11 1 234566777777777654
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=94.85 E-value=0.0086 Score=54.36 Aligned_cols=67 Identities=19% Similarity=0.252 Sum_probs=45.9
Q ss_pred cEEEEEeCChhhHH-HHHHHhhCC--CEEE-EECCCCCCCCccc-cCC-ceecCCHHhhhcC--CcEEEEcccCC
Q 007040 163 LVLGIVGRSASARA-LATRSLSFK--MSVL-YFDVPEGKGKVTF-PSA-ARRMDTLNDLLAA--SDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIGlG~IG~~-vA~~LkafG--~~V~-~~dr~~~~~~~~~-~~g-~~~~~sL~eLL~~--sDvVil~lPlT 229 (620)
.++||||+|.+|+. .+..++.++ ++|. ++|++........ ..+ ...+.+++++++. .|+|++++|..
T Consensus 4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~~ 78 (181)
T d1zh8a1 4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVE 78 (181)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGG
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeecccccc
Confidence 46999999999987 477777654 4666 5688764332111 112 2346789999864 68999999854
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=94.83 E-value=0.066 Score=47.59 Aligned_cols=68 Identities=18% Similarity=0.193 Sum_probs=51.5
Q ss_pred ecCcEEEEEeC--ChhhHHHHHHHhhCCCEEEEECCCCCCCCc-----------cccCCceecCCHHhhhcCCcEEEEcc
Q 007040 160 CRGLVLGIVGR--SASARALATRSLSFKMSVLYFDVPEGKGKV-----------TFPSAARRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 160 L~GktVGIIGl--G~IG~~vA~~LkafG~~V~~~dr~~~~~~~-----------~~~~g~~~~~sL~eLL~~sDvVil~l 226 (620)
|.|++|++||= .++..+++..+..||+++..+.|..-.... .....+....++++.+..+|+|..-.
T Consensus 1 l~g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt~~ 80 (161)
T d1vlva2 1 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV 80 (161)
T ss_dssp STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC
T ss_pred CCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhheeccc
Confidence 57999999994 579999999999999999999886422211 01112345678999999999999765
Q ss_pred c
Q 007040 227 A 227 (620)
Q Consensus 227 P 227 (620)
-
T Consensus 81 ~ 81 (161)
T d1vlva2 81 W 81 (161)
T ss_dssp C
T ss_pred e
Confidence 4
|
| >d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=94.77 E-value=0.039 Score=48.87 Aligned_cols=68 Identities=16% Similarity=0.205 Sum_probs=52.4
Q ss_pred ecCcEEEEEeC---ChhhHHHHHHHhhCCCEEEEECCCCCCCCc-------cccCCceecCCHHhhhcCCcEEEEccc
Q 007040 160 CRGLVLGIVGR---SASARALATRSLSFKMSVLYFDVPEGKGKV-------TFPSAARRMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 160 L~GktVGIIGl---G~IG~~vA~~LkafG~~V~~~dr~~~~~~~-------~~~~g~~~~~sL~eLL~~sDvVil~lP 227 (620)
|.|.+|+|||= +++..+++..+..||+++..+.|..-.... ..........++++.+..+|+|....-
T Consensus 2 l~gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~~~ 79 (157)
T d1ml4a2 2 IDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRI 79 (157)
T ss_dssp SSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCC
T ss_pred cCCCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEeecc
Confidence 68999999998 689999999999999999999886432221 111223456789999999999887654
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.66 E-value=0.048 Score=49.26 Aligned_cols=105 Identities=18% Similarity=0.220 Sum_probs=64.9
Q ss_pred cEEEEEeCChhh--HHHHHHHhh---CC-CEEEEECCCCCCC--C------------ccccCCceecCCHHhhhcCCcEE
Q 007040 163 LVLGIVGRSASA--RALATRSLS---FK-MSVLYFDVPEGKG--K------------VTFPSAARRMDTLNDLLAASDVI 222 (620)
Q Consensus 163 ktVGIIGlG~IG--~~vA~~Lka---fG-~~V~~~dr~~~~~--~------------~~~~~g~~~~~sL~eLL~~sDvV 222 (620)
.+|.|||.|..| ..++..++. +. -++..+|.+.... + ...........+..+.++.||+|
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV 81 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV 81 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence 479999999877 445555543 32 4999999876321 1 00111223456788889999999
Q ss_pred EEcccCChh-----------hHhh--------------------c--CHHHhhccCCCcEEEEcCCChhhcHHHHHHH
Q 007040 223 SLHCAVTDE-----------TIQI--------------------I--NAECLQHIKPGAFLVNTGSSQLLDDCAVKQL 267 (620)
Q Consensus 223 il~lPlT~~-----------T~~l--------------------I--~~~~L~~MK~gAiLINvgRG~vVDe~AL~~A 267 (620)
+++...... ..|+ + =...+....|+++|||++-.--+-..++.+.
T Consensus 82 v~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vtNPvdv~t~~~~k~ 159 (169)
T d1s6ya1 82 TTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRY 159 (169)
T ss_dssp EECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHH
T ss_pred EEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeCChHHHHHHHHHHH
Confidence 999975431 1111 1 0235556789999999987643434444443
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=94.58 E-value=0.014 Score=56.72 Aligned_cols=34 Identities=12% Similarity=0.135 Sum_probs=31.4
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEEC
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFD 192 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~d 192 (620)
.|.|+++.|=|+|++|+.+|+.|...|++|++++
T Consensus 33 ~l~g~~v~IQGfGnVG~~~a~~L~e~Gakvvavs 66 (255)
T d1bgva1 33 TLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLS 66 (255)
T ss_dssp CSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEe
Confidence 4799999999999999999999999999998653
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=94.53 E-value=0.011 Score=55.74 Aligned_cols=69 Identities=13% Similarity=0.158 Sum_probs=47.1
Q ss_pred cCcEEEEEeCChhhHH-HHHHHhhC-CCEEE-EECCCCCCCCcc---c---cCCceecCCHHhhhcC--CcEEEEcccCC
Q 007040 161 RGLVLGIVGRSASARA-LATRSLSF-KMSVL-YFDVPEGKGKVT---F---PSAARRMDTLNDLLAA--SDVISLHCAVT 229 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~-vA~~Lkaf-G~~V~-~~dr~~~~~~~~---~---~~g~~~~~sL~eLL~~--sDvVil~lPlT 229 (620)
+--+|||||+|.||+. ++..++.. +++|. ++|+++...... + ...+....++++++.. .|+|++++|..
T Consensus 32 ~~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~~ 111 (221)
T d1h6da1 32 RRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNS 111 (221)
T ss_dssp CCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGG
T ss_pred CCEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccchh
Confidence 4457999999999974 66776665 77777 678876433211 1 0112345789999864 78999999854
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.52 E-value=0.018 Score=54.34 Aligned_cols=84 Identities=15% Similarity=0.139 Sum_probs=53.0
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
.|+||++.|.|.+. ||+++|+.|...|++|+..+++....+ ...+++-..+..+...+.........+.
T Consensus 2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 71 (248)
T d2o23a1 2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGE----------AQAKKLGNNCVFAPADVTSEKDVQTALA 71 (248)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHH----------HHHHHHCTTEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHH----------HHHHHhCCCccccccccccccccccccc
Confidence 58999999997655 999999999999999999998764322 1133343444444444444444444444
Q ss_pred HHHhhccCCCcEEEE
Q 007040 238 AECLQHIKPGAFLVN 252 (620)
Q Consensus 238 ~~~L~~MK~gAiLIN 252 (620)
.......+.+..+.|
T Consensus 72 ~~~~~~~~~~~~~~~ 86 (248)
T d2o23a1 72 LAKGKFGRVDVAVNC 86 (248)
T ss_dssp HHHHHHSCCCEEEEC
T ss_pred ccccccccccccccc
Confidence 434333444444444
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=94.48 E-value=0.05 Score=48.37 Aligned_cols=106 Identities=15% Similarity=0.138 Sum_probs=61.1
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhC----CCEEEEECCCCCCCCc-cccC-Ccee-cCCHHhhhcCCcEEEEcccCChhhHh
Q 007040 163 LVLGIVGR-SASARALATRSLSF----KMSVLYFDVPEGKGKV-TFPS-AARR-MDTLNDLLAASDVISLHCAVTDETIQ 234 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~Lkaf----G~~V~~~dr~~~~~~~-~~~~-g~~~-~~sL~eLL~~sDvVil~lPlT~~T~~ 234 (620)
++|||||. |..|+.+.++|... -.++..+..+...... .+.. .... ...-.+.+..+|++++++|.... .
T Consensus 2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~~~~s--~ 79 (146)
T d1t4ba1 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDYT--N 79 (146)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCHHHH--H
T ss_pred cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhhcCcEEEEecCchHH--H
Confidence 47999987 99999999876532 2367767655433321 1111 1111 11122357899999999985422 2
Q ss_pred hcCHHHhhccCCCcEEEEcCCCh-----------hhcHHHHHHHHHcC
Q 007040 235 IINAECLQHIKPGAFLVNTGSSQ-----------LLDDCAVKQLLIDG 271 (620)
Q Consensus 235 lI~~~~L~~MK~gAiLINvgRG~-----------vVDe~AL~~AL~~G 271 (620)
-+ ...+..-..++++|+.+..- =|+.+.|..++++|
T Consensus 80 ~~-~~~~~~~g~~~~VID~Ss~fR~~~dvplviPEVN~~~i~~~~~~g 126 (146)
T d1t4ba1 80 EI-YPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNNG 126 (146)
T ss_dssp HH-HHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTT
T ss_pred Hh-hHHHHhcCCCeecccCCcccccCCCCcEECCCcCHHHHHHHHHcC
Confidence 22 12222334446788877422 25666788888764
|
| >d1dfca3 b.42.5.1 (A:1260-1382) Fascin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: beta-Trefoil superfamily: Actin-crosslinking proteins family: Fascin domain: Fascin species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.40 E-value=0.031 Score=48.16 Aligned_cols=81 Identities=16% Similarity=0.199 Sum_probs=60.3
Q ss_pred cccceEEEEEEecCCceEEeeecccccceEEeeeccccCCCccceEEEEecCccccccccccCCceeeecccceEEEeec
Q 007040 503 LKDGYVVALYARDRPALHISRQRHKGGGWILETMSNVTKRDPAAQFLICKSKDTIGLRSFTAGGKLLQINRRMEFVFASH 582 (620)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (620)
-.++.+++|+. ..|-|++-.. +|. ++.+.+..+|-.+|.+..+.+++.||+ ..||.|++...=-+.-.+.
T Consensus 40 ~~~~~~~~Lr~--~~gkyl~~~~--~g~----v~a~~~~~~~~e~F~~~~~~g~~alra--~nG~yl~a~~~G~l~a~~~ 109 (123)
T d1dfca3 40 DRDTKKCAFRT--HTGKYWTLTA--TGG----VQSTASSKNASCYFDIEWRDRRITLRA--SNGKFVTSKKNGQLAASVE 109 (123)
T ss_dssp CTTTCCEEEEE--TTTEEEEECT--TSB----EEEEESSCCGGGCBEEEEETTEEEEEC--TTSSBCEECSSSBEESCCS
T ss_pred CCCCCEEEEEe--CCCCEEEEcC--CCc----EEEccccCCCceEEEEEEeCCeEEEEe--CCCCEEEeCCCCEEEEccC
Confidence 34666788886 6788886531 232 666778889999999944469999999 4799999976654544557
Q ss_pred cccccccceec
Q 007040 583 SFDAWESWAIE 593 (620)
Q Consensus 583 ~~~~~~~~~~~ 593 (620)
+.+-||-|.+|
T Consensus 110 ~~g~~e~f~i~ 120 (123)
T d1dfca3 110 TAGDSELFLMK 120 (123)
T ss_dssp SCCSSSEEEEE
T ss_pred CCCCceEEEEE
Confidence 78999999986
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.31 E-value=0.006 Score=55.07 Aligned_cols=36 Identities=14% Similarity=0.061 Sum_probs=30.9
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCE-EEEECCCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMS-VLYFDVPEG 196 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~-V~~~dr~~~ 196 (620)
.|.+|.|+|.|.||...+..++.+|++ |++.|++..
T Consensus 28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~ 64 (174)
T d1f8fa2 28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVES 64 (174)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHH
T ss_pred CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHH
Confidence 588999999999999999999999995 556677653
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=94.23 E-value=0.015 Score=53.31 Aligned_cols=31 Identities=16% Similarity=0.149 Sum_probs=25.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC-CEEEEECC
Q 007040 163 LVLGIVGRSASARALATRSLSFK-MSVLYFDV 193 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG-~~V~~~dr 193 (620)
++|||-|||+||+.+++.+...+ ++|.+.+-
T Consensus 2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaInd 33 (171)
T d1cf2o1 2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSK 33 (171)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSSSEEEEEEEE
T ss_pred eEEEEEcCcHHHHHHHHHHHhCCCceEEEEec
Confidence 47999999999999999987654 78776653
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.13 E-value=0.078 Score=48.49 Aligned_cols=96 Identities=10% Similarity=-0.010 Sum_probs=66.4
Q ss_pred eecCcEEEEEeCC--hhhHHHHHHHhhCCCEEEEECCCCCCCCcc-----------ccCCceecCCHHhhhcCCcEEEEc
Q 007040 159 RCRGLVLGIVGRS--ASARALATRSLSFKMSVLYFDVPEGKGKVT-----------FPSAARRMDTLNDLLAASDVISLH 225 (620)
Q Consensus 159 ~L~GktVGIIGlG--~IG~~vA~~LkafG~~V~~~dr~~~~~~~~-----------~~~g~~~~~sL~eLL~~sDvVil~ 225 (620)
.|.|.+|++||=| ++..+++..+..||++|.++.|..-..... .........++++.++.+|+|..-
T Consensus 2 ~l~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvVyt~ 81 (185)
T d1dxha2 2 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTD 81 (185)
T ss_dssp CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhccccccEEEee
Confidence 3789999999954 899999999999999999999854221110 112234567899999999999875
Q ss_pred ccCCh----h---------hHhhcC-HHHhhccCCCcEEEEcC
Q 007040 226 CAVTD----E---------TIQIIN-AECLQHIKPGAFLVNTG 254 (620)
Q Consensus 226 lPlT~----~---------T~~lI~-~~~L~~MK~gAiLINvg 254 (620)
.=... + ....++ ...+..++++++|.-+.
T Consensus 82 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ak~~~i~MH~L 124 (185)
T d1dxha2 82 VWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL 124 (185)
T ss_dssp CCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred hhhhhhhhhhhHHHHHHHhhhheeccHHHHhhcCCCEEEEcCC
Confidence 53111 0 011233 34455678899988875
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=94.01 E-value=0.027 Score=49.29 Aligned_cols=85 Identities=8% Similarity=-0.042 Sum_probs=53.2
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC----ccccCCce-------ecCCHHhh-hcCCcEEEEcccCChh
Q 007040 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK----VTFPSAAR-------RMDTLNDL-LAASDVISLHCAVTDE 231 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~----~~~~~g~~-------~~~sL~eL-L~~sDvVil~lPlT~~ 231 (620)
.+-|+|+|.+|+.+++.|...|.+|++.+..+.... .....++. ..+.|+.+ +.+||.|+++++....
T Consensus 5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~~ 84 (153)
T d1id1a_ 5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDAD 84 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHHH
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccHHH
Confidence 489999999999999999999999999987653211 11111221 11123322 6678999999886544
Q ss_pred hHhhcCHHHhhccCCCcEE
Q 007040 232 TIQIINAECLQHIKPGAFL 250 (620)
Q Consensus 232 T~~lI~~~~L~~MK~gAiL 250 (620)
+ ++-......+.|...+
T Consensus 85 n--~~~~~~~r~~~~~~~i 101 (153)
T d1id1a_ 85 N--AFVVLSAKDMSSDVKT 101 (153)
T ss_dssp H--HHHHHHHHHHTSSSCE
T ss_pred H--HHHHHHHHHhCCCCce
Confidence 3 3333344455555433
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=93.96 E-value=0.024 Score=54.41 Aligned_cols=87 Identities=13% Similarity=0.114 Sum_probs=54.4
Q ss_pred eecCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCCh--hhHhh
Q 007040 159 RCRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTD--ETIQI 235 (620)
Q Consensus 159 ~L~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~--~T~~l 235 (620)
+|+||++.|.| .+.||+++|+.|...|++|+..+++....+.. ...+.+.- ..+.++.|-++. +...+
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~-------~~~~~~~~--~~~~~~~~D~s~~~~~~~~ 73 (258)
T d1ae1a_ 3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDEC-------LEIWREKG--LNVEGSVCDLLSRTERDKL 73 (258)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-------HHHHHHTT--CCEEEEECCTTCHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-------HHHHHhcC--CCceEEEeecCCHHHHHHH
Confidence 58999999998 67799999999999999999999875332210 11222222 234444454443 33344
Q ss_pred cCHHHhhcc-CCCcEEEEcCC
Q 007040 236 INAECLQHI-KPGAFLVNTGS 255 (620)
Q Consensus 236 I~~~~L~~M-K~gAiLINvgR 255 (620)
+. +..+.. .+-.++||.+-
T Consensus 74 ~~-~~~~~~~g~idilinnag 93 (258)
T d1ae1a_ 74 MQ-TVAHVFDGKLNILVNNAG 93 (258)
T ss_dssp HH-HHHHHTTSCCCEEEECCC
T ss_pred HH-HHHHHhCCCcEEEecccc
Confidence 43 233444 35668888653
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=93.93 E-value=0.025 Score=46.38 Aligned_cols=65 Identities=15% Similarity=0.041 Sum_probs=42.7
Q ss_pred cEEEEEeCChhhH-HHHHHHhhCCCEEEEECCCCCCCC-ccccCCcee-cCCHHhhhcCCcEEEEccc
Q 007040 163 LVLGIVGRSASAR-ALATRSLSFKMSVLYFDVPEGKGK-VTFPSAARR-MDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 163 ktVGIIGlG~IG~-~vA~~LkafG~~V~~~dr~~~~~~-~~~~~g~~~-~~sL~eLL~~sDvVil~lP 227 (620)
++|=|||.|.+|. ++|+.|+..|+.|.++|....... .....|+.. ..--.+.+..+|+|+..-.
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~SsA 69 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKTPA 69 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEECTT
T ss_pred cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeeecccccCCCCEEEEecC
Confidence 5788999999998 789999999999999998753222 111223321 1112233456787776543
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=93.92 E-value=0.038 Score=49.94 Aligned_cols=39 Identities=13% Similarity=0.088 Sum_probs=35.0
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK 199 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~ 199 (620)
.|.+|.|+|.|.+|...+..++.+|+ +|++.|++....+
T Consensus 29 ~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~ 68 (176)
T d1d1ta2 29 PGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFE 68 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHH
T ss_pred CCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHH
Confidence 68899999999999999999999995 8999999876544
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=93.89 E-value=0.021 Score=52.22 Aligned_cols=30 Identities=13% Similarity=0.218 Sum_probs=25.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEEEEEC
Q 007040 163 LVLGIVGRSASARALATRSLSF-KMSVLYFD 192 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-G~~V~~~d 192 (620)
.+|||.|||+||+.+++.+... .++|.+++
T Consensus 3 irIaINGfGRIGR~v~Ral~~~~dieiVaIN 33 (172)
T d2czca2 3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGIT 33 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHhCCCceEEEEe
Confidence 4799999999999999998754 57777665
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=93.77 E-value=0.024 Score=46.98 Aligned_cols=67 Identities=13% Similarity=0.170 Sum_probs=43.2
Q ss_pred cCcEEEEEeCChhh-HHHHHHHhhCCCEEEEECCCCCCCC-ccccCCcee-cCCHHhhhcCCcEEEEccc
Q 007040 161 RGLVLGIVGRSASA-RALATRSLSFKMSVLYFDVPEGKGK-VTFPSAARR-MDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 161 ~GktVGIIGlG~IG-~~vA~~LkafG~~V~~~dr~~~~~~-~~~~~g~~~-~~sL~eLL~~sDvVil~lP 227 (620)
+.+++=|||.|.+| .++|+.|+..|+.|.++|....... .....|+.. ...-.+.+...|+|+..-.
T Consensus 7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~i~~~d~vV~S~A 76 (96)
T d1p3da1 7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVSSA 76 (96)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEECTT
T ss_pred hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCccccCCCCCEEEECCC
Confidence 56789999999999 5569999999999999998643211 111223321 1122334566777666543
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=93.64 E-value=0.046 Score=49.43 Aligned_cols=39 Identities=10% Similarity=0.047 Sum_probs=34.3
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK 199 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~ 199 (620)
.|.+|.|+|.|.||...+..++.+|+ +|++.|++....+
T Consensus 28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~ 67 (174)
T d1e3ia2 28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFP 67 (174)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHH
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHH
Confidence 68899999999999999999999998 7888898875443
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.51 E-value=0.049 Score=48.51 Aligned_cols=36 Identities=14% Similarity=0.107 Sum_probs=32.3
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 161 RGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
.|.+|.|+|. |.+|....+.++.+|++|++.+++..
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~ 64 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEE 64 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred CCCEEEEEeccccccccccccccccCccccccccccc
Confidence 5889999995 99999999999999999999987653
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.41 E-value=0.022 Score=54.40 Aligned_cols=87 Identities=16% Similarity=0.181 Sum_probs=55.1
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChh--hHhh
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDE--TIQI 235 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~--T~~l 235 (620)
+|.|+++.|-|.+. ||+++|+.|...|++|+.++++....+.. ...+.+. ...++.+.|=.++. ...+
T Consensus 4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~-------~~~~~~~--~~~~~~~~~Dvs~~~~v~~~ 74 (244)
T d1yb1a_ 4 SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEET-------AAKCKGL--GAKVHTFVVDCSNREDIYSS 74 (244)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-------HHHHHHT--TCCEEEEECCTTCHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-------HHHHHhc--CCcEEEEEeeCCCHHHHHHH
Confidence 58999999998876 99999999999999999999976432210 1122222 13455555554432 3334
Q ss_pred cCHHHhhccCCCcEEEEcCC
Q 007040 236 INAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 236 I~~~~L~~MK~gAiLINvgR 255 (620)
++ ...+.+.+=-++||.+.
T Consensus 75 ~~-~i~~~~g~idilinnag 93 (244)
T d1yb1a_ 75 AK-KVKAEIGDVSILVNNAG 93 (244)
T ss_dssp HH-HHHHHTCCCSEEEECCC
T ss_pred HH-HHHHHcCCCceeEeecc
Confidence 43 23445555556677654
|
| >d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Bacillus subtilis [TaxId: 1423]
Probab=93.32 E-value=0.05 Score=48.44 Aligned_cols=63 Identities=24% Similarity=0.289 Sum_probs=49.5
Q ss_pred cCcEEEEEeC---ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcc
Q 007040 161 RGLVLGIVGR---SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 161 ~GktVGIIGl---G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~l 226 (620)
.|.+|+|||= ++++.+++..+..||++|....|..-... ........++++.+..+|+|...-
T Consensus 2 ~gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~~---~~~~~~~~~~~ea~~~aDviy~~r 67 (151)
T d2at2a2 2 KGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDE---ENTFGTYVSMDEAVESSDVVMLLR 67 (151)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhcc---ccceeEEEechhccccCceeeeeE
Confidence 5889999997 68999999999999999999988653222 122345568999999999987643
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.24 E-value=0.038 Score=49.03 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=43.3
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCC--EEEEECCCCCCC--C----------ccccCCce---ecCCHHhhhcCCcEEEE
Q 007040 163 LVLGIVGR-SASARALATRSLSFKM--SVLYFDVPEGKG--K----------VTFPSAAR---RMDTLNDLLAASDVISL 224 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafG~--~V~~~dr~~~~~--~----------~~~~~g~~---~~~sL~eLL~~sDvVil 224 (620)
++|+|||. |.+|+.+|..|...|. ++..||...... + ........ ...+-.+.+++||+|++
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi 80 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII 80 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence 47999995 9999999999998885 999999764211 0 00001111 11223457789999999
Q ss_pred cc
Q 007040 225 HC 226 (620)
Q Consensus 225 ~l 226 (620)
+.
T Consensus 81 tA 82 (145)
T d1hyea1 81 TS 82 (145)
T ss_dssp CC
T ss_pred ec
Confidence 84
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=93.02 E-value=0.049 Score=49.12 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=32.4
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
||+|.|||.|.-|-..|..|+..|++|.+++....
T Consensus 1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~ 35 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGK 35 (373)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 68999999999999999999999999999997653
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=92.96 E-value=0.11 Score=47.04 Aligned_cols=105 Identities=10% Similarity=0.073 Sum_probs=64.8
Q ss_pred CcEEEEEeCChhhHHHH--HHHhh-C---CCEEEEECCCCCCCC------------ccccCCceecCCHHhhhcCCcEEE
Q 007040 162 GLVLGIVGRSASARALA--TRSLS-F---KMSVLYFDVPEGKGK------------VTFPSAARRMDTLNDLLAASDVIS 223 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA--~~Lka-f---G~~V~~~dr~~~~~~------------~~~~~g~~~~~sL~eLL~~sDvVi 223 (620)
..+|.|||.|.+|...+ ..++. . +-+|..+|......+ ...+.......+..+.+..||+|+
T Consensus 3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vv 82 (167)
T d1u8xx1 3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM 82 (167)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEEE
Confidence 45799999999986533 33332 2 238999998764322 011122345568899999999999
Q ss_pred EcccCChh---h--------Hh--------------------hc--CHHHhhccCCCcEEEEcCCChhhcHHHHHH
Q 007040 224 LHCAVTDE---T--------IQ--------------------II--NAECLQHIKPGAFLVNTGSSQLLDDCAVKQ 266 (620)
Q Consensus 224 l~lPlT~~---T--------~~--------------------lI--~~~~L~~MK~gAiLINvgRG~vVDe~AL~~ 266 (620)
++.-.... + .| ++ -.+.+....|+|+|||++-.--+-..++.+
T Consensus 83 itag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A~li~~TNPvdv~t~~~~k 158 (167)
T d1u8xx1 83 AHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRR 158 (167)
T ss_dssp ECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHHHH
T ss_pred ECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHHH
Confidence 99754221 0 01 11 023445567999999998765444444444
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.92 E-value=0.051 Score=46.24 Aligned_cols=35 Identities=11% Similarity=0.059 Sum_probs=32.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCC
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGK 197 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~ 197 (620)
+++.|||.|.||.++|..|..+|++|..+.+...-
T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~ 58 (122)
T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQI 58 (122)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CeEEEECCCchHHHHHHHHHhhCcceeEEEecccc
Confidence 58999999999999999999999999999987643
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=92.85 E-value=0.041 Score=52.18 Aligned_cols=85 Identities=18% Similarity=0.215 Sum_probs=56.6
Q ss_pred ecCcEEEEEeC-C--hhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhc
Q 007040 160 CRGLVLGIVGR-S--ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII 236 (620)
Q Consensus 160 L~GktVGIIGl-G--~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI 236 (620)
|.||++.|.|. | .||.++|+.|...|++|+..+++..... ....+.+....+.++..-+....+...++
T Consensus 3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~--------~~~~l~~~~~~~~~~~~d~~~~~~~~~~~ 74 (274)
T d2pd4a1 3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEK--------RVRPIAQELNSPYVYELDVSKEEHFKSLY 74 (274)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHH--------HHHHHHHHTTCCCEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH--------HHHHHHhhCCceeEeeecccchhhHHHHH
Confidence 78999999996 4 5999999999999999999998742111 12234455566666655555555555565
Q ss_pred CHHHhhccCCCcEEEEc
Q 007040 237 NAECLQHIKPGAFLVNT 253 (620)
Q Consensus 237 ~~~~L~~MK~gAiLINv 253 (620)
+. ..+.+.+--++||.
T Consensus 75 ~~-~~~~~g~id~lV~n 90 (274)
T d2pd4a1 75 NS-VKKDLGSLDFIVHS 90 (274)
T ss_dssp HH-HHHHTSCEEEEEEC
T ss_pred HH-HHHHcCCCCeEEee
Confidence 43 34445444455544
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.71 E-value=0.067 Score=47.12 Aligned_cols=88 Identities=14% Similarity=0.077 Sum_probs=53.3
Q ss_pred cEEEEEeC-ChhhHHHHHHHhh--C-CCEEEEECCCCCCCCccccCC--ceecCCHHhhhcCCcEEEEcccCChhhHhhc
Q 007040 163 LVLGIVGR-SASARALATRSLS--F-KMSVLYFDVPEGKGKVTFPSA--ARRMDTLNDLLAASDVISLHCAVTDETIQII 236 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~Lka--f-G~~V~~~dr~~~~~~~~~~~g--~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI 236 (620)
++|||||. |-.|+++.+.|.. | ..++..+..+...+....... ........+.+..+|++++++|... +..+.
T Consensus 3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~~-s~~~~ 81 (144)
T d2hjsa1 3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEV-SRAHA 81 (144)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHHH-HHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhhccceEEEecCCcch-hhhhc
Confidence 57999987 9999999999963 3 346766654443333111111 1111123355778999999998432 22222
Q ss_pred CHHHhhccCCCcEEEEcCC
Q 007040 237 NAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 237 ~~~~L~~MK~gAiLINvgR 255 (620)
. .....|.++||.+.
T Consensus 82 -~---~~~~~g~~VID~Ss 96 (144)
T d2hjsa1 82 -E---RARAAGCSVIDLSG 96 (144)
T ss_dssp -H---HHHHTTCEEEETTC
T ss_pred -c---ccccCCceEEeech
Confidence 1 22457899999875
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=92.66 E-value=0.088 Score=51.85 Aligned_cols=33 Identities=21% Similarity=0.021 Sum_probs=27.6
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 163 LVLGIVG-RSASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
|++.|.| .|-||+.+++.|...|++|+++|+..
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~ 35 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA 35 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence 4455777 89999999999999999999999854
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=92.64 E-value=0.061 Score=45.55 Aligned_cols=35 Identities=20% Similarity=0.187 Sum_probs=32.2
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
.++|.|||.|.||-++|..|..+|.+|..+.+...
T Consensus 22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~ 56 (117)
T d1onfa2 22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNR 56 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred CCEEEEECCchHHHHHHHHHHhccccceeeehhcc
Confidence 36899999999999999999999999999998764
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.62 E-value=0.055 Score=45.29 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=31.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
+++.|||.|.||.++|..+..+|.+|..+.+...
T Consensus 23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~ 56 (117)
T d1ebda2 23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE 56 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CeEEEECCCccceeeeeeecccccEEEEEEecce
Confidence 6899999999999999999999999999987764
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=92.57 E-value=0.081 Score=49.53 Aligned_cols=67 Identities=21% Similarity=0.140 Sum_probs=45.5
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcc--------ccCCc-------eecCCHHhhhcCCcEEEEcc
Q 007040 163 LVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVT--------FPSAA-------RRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~--------~~~g~-------~~~~sL~eLL~~sDvVil~l 226 (620)
++|.|+| .|.||+.+++.|...|++|+++.|........ ...++ .....+.+.+..+++++.++
T Consensus 4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~~ 83 (312)
T d1qyda_ 4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISAL 83 (312)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhhh
Confidence 4689998 69999999999999999999999875432200 00111 11233556677778777777
Q ss_pred cCC
Q 007040 227 AVT 229 (620)
Q Consensus 227 PlT 229 (620)
+..
T Consensus 84 ~~~ 86 (312)
T d1qyda_ 84 AGG 86 (312)
T ss_dssp CCS
T ss_pred hhc
Confidence 643
|
| >d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Escherichia coli [TaxId: 562]
Probab=92.44 E-value=0.15 Score=45.12 Aligned_cols=67 Identities=12% Similarity=0.139 Sum_probs=47.6
Q ss_pred ecCcEEEEEeC---ChhhHHHHHHHhhCCC-EEEEECCCCCCCCc-------cccCCceecCCHHhhhcCCcEEEEcc
Q 007040 160 CRGLVLGIVGR---SASARALATRSLSFKM-SVLYFDVPEGKGKV-------TFPSAARRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 160 L~GktVGIIGl---G~IG~~vA~~LkafG~-~V~~~dr~~~~~~~-------~~~~g~~~~~sL~eLL~~sDvVil~l 226 (620)
+.|.+|++||= |++..+++..+..||. .++++.|....... ..........++++++.++|+|...-
T Consensus 2 l~gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~ 79 (160)
T d1ekxa2 2 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTR 79 (160)
T ss_dssp SSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCSTTTGGGCSEEEECC
T ss_pred CCCCEEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHhhhccccccccCHHHHhCcCceEEeec
Confidence 67999999996 6699999999999975 56666654322221 11122344678999999999998643
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=92.43 E-value=0.014 Score=52.29 Aligned_cols=89 Identities=18% Similarity=0.143 Sum_probs=54.6
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCccccCCce-ec----CCHHhhhc-----CCcEEEEcccCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAAR-RM----DTLNDLLA-----ASDVISLHCAVT 229 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~~~g~~-~~----~sL~eLL~-----~sDvVil~lPlT 229 (620)
.|.+|.|+|.|.+|...+..++.+|. .|++.+++....+.....+.. .. +..++.++ ..|+|+.++...
T Consensus 32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g~~ 111 (172)
T d1h2ba2 32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQ 111 (172)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCCH
T ss_pred CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecCcc
Confidence 47889999999999999999999886 778888876433311111211 11 11222221 257777776633
Q ss_pred hhhHhhcCHHHhhccCCCcEEEEcC
Q 007040 230 DETIQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 230 ~~T~~lI~~~~L~~MK~gAiLINvg 254 (620)
. + + ...+..++++..++.+|
T Consensus 112 ~-~---~-~~a~~~l~~~G~iv~~G 131 (172)
T d1h2ba2 112 A-T---V-DYTPYLLGRMGRLIIVG 131 (172)
T ss_dssp H-H---H-HHGGGGEEEEEEEEECC
T ss_pred h-H---H-HHHHHHHhCCCEEEEEe
Confidence 2 1 1 23456677777777765
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.31 E-value=0.07 Score=55.23 Aligned_cols=86 Identities=9% Similarity=0.004 Sum_probs=59.4
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC-----cccc--------------------CC--ce-e-
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK-----VTFP--------------------SA--AR-R- 208 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~-----~~~~--------------------~g--~~-~- 208 (620)
.|++.+|.|||+|.+|..+|+.|...|. ++..+|...-... ..+. .. +. .
T Consensus 34 ~l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 113 (426)
T d1yovb1 34 LLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHF 113 (426)
T ss_dssp HHHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEC
T ss_pred HHhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeee
Confidence 4788999999999999999999999998 7889987532111 0000 00 00 0
Q ss_pred ---cCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccC
Q 007040 209 ---MDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIK 245 (620)
Q Consensus 209 ---~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK 245 (620)
.+..++++.+.|+|+.++- +.+++.++|...+...+
T Consensus 114 ~~i~~~~~~~~~~~DlVi~~~D-n~~aR~~in~~c~~l~k 152 (426)
T d1yovb1 114 NKIQDFNDTFYRQFHIIVCGLD-SIIARRWINGMLISLLN 152 (426)
T ss_dssp SCGGGBCHHHHTTCSEEEECCS-CHHHHHHHHHHHHHTCC
T ss_pred ccccchHHHHHHhcchheeccC-cHHHHHHHHHHHHHhhc
Confidence 1122467889999988775 56778888887766544
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=92.30 E-value=0.059 Score=46.81 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=24.8
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCCEEEE
Q 007040 163 LVLGIVGR-SASARALATRSLSFKMSVLY 190 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafG~~V~~ 190 (620)
++|||+|+ |+||+.+++.+...|+++.+
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~ 29 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVL 29 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEE
Confidence 47999996 99999999999999998764
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=92.27 E-value=0.094 Score=47.10 Aligned_cols=38 Identities=8% Similarity=0.008 Sum_probs=33.9
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKG 198 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~ 198 (620)
.|.+|.|+|.|.+|...+..++++|. +|++.|++....
T Consensus 27 ~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl 65 (174)
T d1p0fa2 27 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKF 65 (174)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGH
T ss_pred CCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHH
Confidence 68899999999999999999999997 899999876543
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=92.24 E-value=0.075 Score=47.10 Aligned_cols=89 Identities=15% Similarity=0.226 Sum_probs=57.0
Q ss_pred CcEEEEEeC-ChhhHHHHHHHhhCCC---EEEEECCCCCCCCcc--ccCCceecCCHHhhhcCCcEEEEcccCChhhHhh
Q 007040 162 GLVLGIVGR-SASARALATRSLSFKM---SVLYFDVPEGKGKVT--FPSAARRMDTLNDLLAASDVISLHCAVTDETIQI 235 (620)
Q Consensus 162 GktVGIIGl-G~IG~~vA~~LkafG~---~V~~~dr~~~~~~~~--~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~l 235 (620)
|-+|||||. |-.|+++.+.|....+ ++.++..+...+... ...........++...+.|++++++|... +..+
T Consensus 1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~-s~~~ 79 (154)
T d2gz1a1 1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSST-SAKY 79 (154)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHH-HHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhhhhhhhhhccCccc-hhhH
Confidence 457999998 9999999999987643 566665443333211 11112223445667788999999998432 2222
Q ss_pred cCHHHhhccCCCcEEEEcCC
Q 007040 236 INAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 236 I~~~~L~~MK~gAiLINvgR 255 (620)
.......|..+|+.|.
T Consensus 80 ----~~~~~~~~~~VIDlSs 95 (154)
T d2gz1a1 80 ----APYAVKAGVVVVDNTS 95 (154)
T ss_dssp ----HHHHHHTTCEEEECSS
T ss_pred ----HhhhccccceehhcCh
Confidence 2234567999999875
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=92.20 E-value=0.028 Score=47.96 Aligned_cols=87 Identities=16% Similarity=0.115 Sum_probs=51.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCcee----cCC---HHhh-hcCCcEEEEcccCChhhHh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR----MDT---LNDL-LAASDVISLHCAVTDETIQ 234 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~----~~s---L~eL-L~~sDvVil~lPlT~~T~~ 234 (620)
|.+-|+|+|.+|+.+++.|++.+ |.+.+..+.........+... ..+ |.++ +.+|+.|+++.+....+
T Consensus 1 kHivI~G~g~~g~~l~~~L~~~~--i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n-- 76 (129)
T d2fy8a1 1 RHVVICGWSESTLECLRELRGSE--VFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSET-- 76 (129)
T ss_dssp CCEEEESCCHHHHHHHHTSCGGG--EEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHHH--
T ss_pred CEEEEECCCHHHHHHHHHHcCCC--CEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchhhh--
Confidence 45889999999999999998665 455555543222112222211 112 3322 67899999988865443
Q ss_pred hcCHHHhhccCCCc-EEEEc
Q 007040 235 IINAECLQHIKPGA-FLVNT 253 (620)
Q Consensus 235 lI~~~~L~~MK~gA-iLINv 253 (620)
++-...+..+.|.. +++-+
T Consensus 77 ~~~~~~~r~~~~~~~iia~~ 96 (129)
T d2fy8a1 77 IHCILGIRKIDESVRIIAEA 96 (129)
T ss_dssp HHHHHHHHHHCSSSCEEEEC
T ss_pred HHHHHHHHHHCCCceEEEEE
Confidence 33344455666664 44443
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=92.17 E-value=0.17 Score=45.60 Aligned_cols=99 Identities=20% Similarity=0.224 Sum_probs=61.4
Q ss_pred cEEEEEe-CChhhHHHHHHHhhC-CCEEEEECC---CCCCCCcc----------ccCCceecCCHHhhhcCCcEEEEccc
Q 007040 163 LVLGIVG-RSASARALATRSLSF-KMSVLYFDV---PEGKGKVT----------FPSAARRMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~Lkaf-G~~V~~~dr---~~~~~~~~----------~~~g~~~~~sL~eLL~~sDvVil~lP 227 (620)
.+|+||| .|-.|+++.+.|..+ .++|..... ....+... .........+.......+|+|++++|
T Consensus 2 ikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~alp 81 (179)
T d2g17a1 2 LNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLATA 81 (179)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECSC
T ss_pred cEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeecccc
Confidence 4799999 899999999999987 777765532 11122200 00111223445566788999999999
Q ss_pred CChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHH
Q 007040 228 VTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQ 266 (620)
Q Consensus 228 lT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~ 266 (620)
.... .- ..-.....|..+|+.+..--.+....+.
T Consensus 82 ~~~s--~~---~~~~~~~~~~~vIDlSadfRl~~~~~~~ 115 (179)
T d2g17a1 82 HEVS--HD---LAPQFLQAGCVVFDLSGAFRVNDRAFYE 115 (179)
T ss_dssp HHHH--HH---HHHHHHHTTCEEEECSSTTSSSCHHHHH
T ss_pred chhH--HH---HhhhhhhcCceeeccccccccccccccc
Confidence 5422 11 1223356789999998765555555444
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.11 E-value=0.045 Score=48.46 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=32.6
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCE-EEEECCCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMS-VLYFDVPEG 196 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~-V~~~dr~~~ 196 (620)
.+++|.|||-|.+|...|..|+.+|++ |.+|++...
T Consensus 3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~ 39 (196)
T d1gtea4 3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEY 39 (196)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence 578999999999999999999999994 999998753
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=92.09 E-value=0.077 Score=44.54 Aligned_cols=35 Identities=11% Similarity=0.101 Sum_probs=32.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCC
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGK 197 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~ 197 (620)
+++.|||-|.+|.++|..|+.+|.+|..+++....
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~ 56 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAP 56 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CEEEEECCChhhHHHHHHhhccccEEEEEeecchh
Confidence 57999999999999999999999999999987643
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=92.07 E-value=0.52 Score=42.72 Aligned_cols=99 Identities=14% Similarity=0.193 Sum_probs=64.3
Q ss_pred cEEEEEe-CChhhHHHHHHHhhC-CCEEEEECCCCCCCCcc-------ccCCceecCCHHhhhcCCcEEEEcccCChhhH
Q 007040 163 LVLGIVG-RSASARALATRSLSF-KMSVLYFDVPEGKGKVT-------FPSAARRMDTLNDLLAASDVISLHCAVTDETI 233 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~Lkaf-G~~V~~~dr~~~~~~~~-------~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~ 233 (620)
.+||||| .|-.|+++.+.|..+ .++|.++-.+...+... ...-.....+.+++..++|+|++++|.... .
T Consensus 2 ikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~~s-~ 80 (176)
T d1vkna1 2 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGAS-Y 80 (176)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTHH-H
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccHHH-H
Confidence 3699997 599999999999875 45777664433333211 011112234667777889999999997643 2
Q ss_pred hhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHH
Q 007040 234 QIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLL 268 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL 268 (620)
.++ ... .+..+||.|-.-=.+....++.-
T Consensus 81 ~~~-----~~~-~~~~VIDlSadfRl~~~~~y~~~ 109 (176)
T d1vkna1 81 DLV-----REL-KGVKIIDLGADFRFDDPGVYREW 109 (176)
T ss_dssp HHH-----TTC-CSCEEEESSSTTTCSSHHHHHHH
T ss_pred HHH-----Hhh-ccceEEecCccccccchhhHHHh
Confidence 232 233 58899999876666666655543
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=92.02 E-value=0.071 Score=51.28 Aligned_cols=39 Identities=15% Similarity=0.108 Sum_probs=35.8
Q ss_pred eeecCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 158 RRCRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 158 ~~L~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
.+|.||++.|-| .|.||+++|+.|...|++|++.+++..
T Consensus 21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~ 60 (294)
T d1w6ua_ 21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMD 60 (294)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 579999999997 789999999999999999999998763
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=91.89 E-value=0.029 Score=53.71 Aligned_cols=37 Identities=19% Similarity=0.172 Sum_probs=33.4
Q ss_pred eecCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCC
Q 007040 159 RCRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 159 ~L~GktVGIIGlG-~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
+|.||++.|.|-+ .||+++|+.|...|++|+..|++.
T Consensus 2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~ 39 (260)
T d1zema1 2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNR 39 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 5899999999875 599999999999999999999865
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=91.83 E-value=0.091 Score=43.83 Aligned_cols=37 Identities=16% Similarity=0.026 Sum_probs=33.7
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
..+++|.|||-|.||-++|..|+.+|.+|..+.+...
T Consensus 20 ~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~ 56 (121)
T d1mo9a2 20 EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP 56 (121)
T ss_dssp CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccch
Confidence 3578999999999999999999999999999998753
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=91.82 E-value=0.46 Score=41.96 Aligned_cols=107 Identities=14% Similarity=0.143 Sum_probs=58.7
Q ss_pred cEEEEEe-CChhhHHHHHHHhhC----CCEEEEECCCCCCCCc-cccCC--ceecCCHHhhhcCCcEEEEcccCChhhHh
Q 007040 163 LVLGIVG-RSASARALATRSLSF----KMSVLYFDVPEGKGKV-TFPSA--ARRMDTLNDLLAASDVISLHCAVTDETIQ 234 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~Lkaf----G~~V~~~dr~~~~~~~-~~~~g--~~~~~sL~eLL~~sDvVil~lPlT~~T~~ 234 (620)
++||||| .|-.|+++.++|... ..++..+..+...... .+... ......-.+.+.++|+|++|+|... +..
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~~~-s~~ 79 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGSY-TEK 79 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHHH-HHH
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEecCchH-HHH
Confidence 5799996 699999999987642 3577666544322221 11111 1111122345789999999999542 222
Q ss_pred hcCHHHhhccCCCcEEEEcCCCh-----------hhcHHHHHHHHHcCC
Q 007040 235 IINAECLQHIKPGAFLVNTGSSQ-----------LLDDCAVKQLLIDGT 272 (620)
Q Consensus 235 lI~~~~L~~MK~gAiLINvgRG~-----------vVDe~AL~~AL~~G~ 272 (620)
+. .. +..-..++++|+.|.-- =++.+.+.++++.|+
T Consensus 80 ~~-~~-l~~~g~~~~VIDlSsdfR~~~dvpl~lPEiN~~~I~~a~~~~~ 126 (147)
T d1mb4a1 80 VY-PA-LRQAGWKGYWIDAASTLRMDKEAIITLDPVNLKQILHGIHHGT 126 (147)
T ss_dssp HH-HH-HHHTTCCSEEEESSSTTTTCTTEEEECHHHHHHHHHHHHHTTC
T ss_pred Hh-HH-HHHcCCceEEEeCCccccccCCceEEeCCcCHHHHHHHHHcCC
Confidence 22 22 22233346777776421 145555666665543
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.79 E-value=0.062 Score=51.33 Aligned_cols=92 Identities=13% Similarity=0.170 Sum_probs=59.6
Q ss_pred cceeecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCCh--hh
Q 007040 156 GMRRCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTD--ET 232 (620)
Q Consensus 156 ~~~~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~--~T 232 (620)
+|.+|.||++.|.|. +.||.++|+.|...|++|++++++....+. ....+.+.-....++.+.|=++. +.
T Consensus 4 ~M~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~-------~~~~l~~~~~~~~~~~~~~Dls~~~~v 76 (257)
T d1xg5a_ 4 GMERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEE-------LAAECKSAGYPGTLIPYRCDLSNEEDI 76 (257)
T ss_dssp TCGGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-------HHHHHHHTTCSSEEEEEECCTTCHHHH
T ss_pred CCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-------HHHHHHhcCCCceEEEEEccCCCHHHH
Confidence 467799999999975 579999999999999999999987532210 01122222233567777776554 34
Q ss_pred HhhcCHHHhhccCCCcEEEEcCC
Q 007040 233 IQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 233 ~~lI~~~~L~~MK~gAiLINvgR 255 (620)
..+++ ...+.+.+=-+|||.+-
T Consensus 77 ~~~v~-~~~~~~g~iD~lVnnAg 98 (257)
T d1xg5a_ 77 LSMFS-AIRSQHSGVDICINNAG 98 (257)
T ss_dssp HHHHH-HHHHHHCCCSEEEECCC
T ss_pred HHHHH-HHHHhcCCCCEEEeccc
Confidence 45554 33444444346777763
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.76 E-value=0.087 Score=44.80 Aligned_cols=34 Identities=15% Similarity=-0.087 Sum_probs=31.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
+++.|||-|.||-++|..|+.+|.+|..+.+...
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~ 56 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK 56 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccc
Confidence 6899999999999999999999999999998763
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=91.68 E-value=0.082 Score=44.63 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=31.4
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
+++.|||-|.||.++|..++.+|++|..+.+...
T Consensus 23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ 56 (119)
T d3lada2 23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK 56 (119)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEEeecc
Confidence 7799999999999999999999999999987653
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=91.63 E-value=0.045 Score=52.37 Aligned_cols=37 Identities=16% Similarity=0.110 Sum_probs=33.6
Q ss_pred eecCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCC
Q 007040 159 RCRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 159 ~L~GktVGIIGlG-~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
+|.||++.|-|-+ .||+++|+.|...|++|+..+++.
T Consensus 5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~ 42 (259)
T d2ae2a_ 5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQ 42 (259)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 5899999999876 599999999999999999999865
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.50 E-value=0.058 Score=51.58 Aligned_cols=38 Identities=16% Similarity=0.120 Sum_probs=34.3
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
.|.||++.|.|.+. ||+++|+.|...|++|+..+|+..
T Consensus 11 ~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~ 49 (269)
T d1xu9a_ 11 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKE 49 (269)
T ss_dssp GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 48999999998765 999999999999999999998763
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=91.39 E-value=0.12 Score=45.98 Aligned_cols=39 Identities=10% Similarity=0.121 Sum_probs=34.4
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK 199 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~ 199 (620)
.|.+|.|+|.|.+|...+..++.+|. +|++.+++....+
T Consensus 28 ~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~ 67 (176)
T d2jhfa2 28 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFA 67 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHH
Confidence 68899999999999999999999985 8999998875443
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=91.28 E-value=0.038 Score=52.38 Aligned_cols=83 Identities=14% Similarity=0.125 Sum_probs=53.8
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCC--hhhHhh
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVT--DETIQI 235 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT--~~T~~l 235 (620)
.|.||++.|.|.+. ||+++|+.|...|++|+..+++..... ...+++ ..+++.+.+=++ ++...+
T Consensus 2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~----------~~~~~~--~~~~~~~~~Dls~~~~i~~~ 69 (241)
T d2a4ka1 2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLA----------EAVAAL--EAEAIAVVADVSDPKAVEAV 69 (241)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH----------HHHHTC--CSSEEEEECCTTSHHHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH----------HHHHHc--CCceEEEEecCCCHHHHHHH
Confidence 37899999998776 999999999999999999998753221 011121 235555555443 234444
Q ss_pred cCHHHhhccCCCcEEEEcC
Q 007040 236 INAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 236 I~~~~L~~MK~gAiLINvg 254 (620)
+.. ..+.+.+=-+|||.+
T Consensus 70 ~~~-i~~~~g~iDiLinnA 87 (241)
T d2a4ka1 70 FAE-ALEEFGRLHGVAHFA 87 (241)
T ss_dssp HHH-HHHHHSCCCEEEEGG
T ss_pred HHH-HHHHhCCccEecccc
Confidence 543 344455556777764
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=91.14 E-value=0.088 Score=45.12 Aligned_cols=35 Identities=14% Similarity=0.116 Sum_probs=31.5
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCC--CEEEEECCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFK--MSVLYFDVPE 195 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG--~~V~~~dr~~ 195 (620)
.|++|.|||-|.+|-.+|..|+.+| .+|+.+++.+
T Consensus 1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 4899999999999999999999877 5899998776
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=91.13 E-value=0.065 Score=45.56 Aligned_cols=36 Identities=8% Similarity=-0.022 Sum_probs=32.7
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCC
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGK 197 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~ 197 (620)
.+++.|||.|-||-++|..+..+|++|..+.+....
T Consensus 25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~ 60 (123)
T d1dxla2 25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEI 60 (123)
T ss_dssp CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEcccc
Confidence 368999999999999999999999999999987644
|
| >d1dfca1 b.42.5.1 (A:1008-1140) Fascin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: beta-Trefoil superfamily: Actin-crosslinking proteins family: Fascin domain: Fascin species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.13 E-value=0.079 Score=46.22 Aligned_cols=78 Identities=17% Similarity=0.244 Sum_probs=58.8
Q ss_pred cceEEEEEEecCCceEEeeecccccceEEeeeccccCCCccceEEEEecCc-cccccccccCCceeeecccceEEEeecc
Q 007040 505 DGYVVALYARDRPALHISRQRHKGGGWILETMSNVTKRDPAAQFLICKSKD-TIGLRSFTAGGKLLQINRRMEFVFASHS 583 (620)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (620)
+|-+|+|++ ..|.||+=. ++| +++-|.+...|..+|.++.+.| ++.|||. +.|+.|.++.-- ++-.+.+
T Consensus 49 ~~~~v~Lrs--~~Gkylsa~---~~g---~v~a~~~~~~~~E~F~~~~~~dG~~~l~s~-~nG~yl~~~~~~-l~a~~~~ 118 (133)
T d1dfca1 49 GSAAVCLRS--HLGRYLAAD---KDG---NVTCEREVPGPDCRFLIVAHDDGRWSLQSE-AHRRYFGGTEDR-LSCFAQT 118 (133)
T ss_dssp --CCBCCBC--TTSCEEEEC---TTS---CEEEEESSCCGGGCEECCBCSSSCBCCEET-TTCCEEEEETTE-EEEEESS
T ss_pred CCCEEEEEe--cCCCEEeec---cCc---ceEEcCCCCCCCcEEEEEECCCCEEEEEEc-CCCcEEEecCCc-eEEeCCC
Confidence 567888887 468898754 223 4677888899999999977766 8888875 478999987653 5556778
Q ss_pred cccccccee
Q 007040 584 FDAWESWAI 592 (620)
Q Consensus 584 ~~~~~~~~~ 592 (620)
-+-||.|.+
T Consensus 119 ~~~~e~f~v 127 (133)
T d1dfca1 119 VSPAEKWSV 127 (133)
T ss_dssp CCGGGCBEE
T ss_pred CCCCeeEEE
Confidence 899999987
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=91.06 E-value=0.058 Score=51.59 Aligned_cols=39 Identities=15% Similarity=0.030 Sum_probs=35.0
Q ss_pred ceeecCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 157 MRRCRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 157 ~~~L~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
..+|.||++.|-| .+.||+++|+.|...|++|++.+++.
T Consensus 13 ~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~ 52 (272)
T d1g0oa_ 13 SASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANS 52 (272)
T ss_dssp GGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence 3579999999998 78999999999999999999988765
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.04 E-value=0.068 Score=45.50 Aligned_cols=32 Identities=19% Similarity=-0.050 Sum_probs=29.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCC
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVP 194 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~ 194 (620)
+++.|||-|.||.++|..++.+|.+|..+.+.
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~ 52 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 52 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence 47999999999999999999999999999764
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=90.94 E-value=0.11 Score=44.00 Aligned_cols=37 Identities=19% Similarity=0.084 Sum_probs=33.5
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGK 197 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~ 197 (620)
.++++.|||-|.+|-++|..|+..|.+|..+++...-
T Consensus 29 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~ 65 (121)
T d1d7ya2 29 PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRL 65 (121)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred cCCeEEEECcchhHHHHHHHhhcccceEEEEeecccc
Confidence 3678999999999999999999999999999987643
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=90.93 E-value=0.073 Score=47.97 Aligned_cols=90 Identities=12% Similarity=0.078 Sum_probs=54.3
Q ss_pred CcEEEEEeC-ChhhHHHHHHHhhC-CCEEE-EECCCCCCCC--------ccccCCceecCCHHhhhcCCcEEEEcccCCh
Q 007040 162 GLVLGIVGR-SASARALATRSLSF-KMSVL-YFDVPEGKGK--------VTFPSAARRMDTLNDLLAASDVISLHCAVTD 230 (620)
Q Consensus 162 GktVGIIGl-G~IG~~vA~~Lkaf-G~~V~-~~dr~~~~~~--------~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~ 230 (620)
..+|+|+|+ |+||+.+++.+... ++++. ++++...... .....++....++++++..+|+|+--..- +
T Consensus 4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs~p-~ 82 (162)
T d1diha1 4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRP-E 82 (162)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSCH-H
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEeccH-H
Confidence 357999995 99999999998754 78765 5565432111 01123345567888999999999865431 2
Q ss_pred hhHhhcCHHHhhccCCCcEEEEcCCC
Q 007040 231 ETIQIINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 231 ~T~~lI~~~~L~~MK~gAiLINvgRG 256 (620)
.+...+. ...+.+.-+|--..|
T Consensus 83 ~~~~~~~----~a~~~~~~~ViGTTG 104 (162)
T d1diha1 83 GTLNHLA----FCRQHGKGMVIGTTG 104 (162)
T ss_dssp HHHHHHH----HHHHTTCEEEECCCC
T ss_pred HHHHHHH----HHHhccceeEEecCC
Confidence 2333332 112334555555556
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.93 E-value=0.11 Score=49.04 Aligned_cols=37 Identities=11% Similarity=0.029 Sum_probs=33.2
Q ss_pred eecCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCC
Q 007040 159 RCRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 159 ~L~GktVGIIGlG-~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
.|.||++.|.|.+ .||+++|+.|...|++|++.+++.
T Consensus 4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~ 41 (244)
T d1pr9a_ 4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ 41 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence 4899999999755 599999999999999999999875
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=90.90 E-value=0.15 Score=47.06 Aligned_cols=36 Identities=14% Similarity=0.129 Sum_probs=31.6
Q ss_pred CcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCC
Q 007040 162 GLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGK 197 (620)
Q Consensus 162 GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~ 197 (620)
-++|.|+|. |.||+.+++.|...|++|++++|....
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~ 39 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA 39 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence 467999985 999999999999999999999987643
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=90.70 E-value=0.12 Score=49.97 Aligned_cols=38 Identities=11% Similarity=0.071 Sum_probs=34.3
Q ss_pred ecCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCC
Q 007040 160 CRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGK 197 (620)
Q Consensus 160 L~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~ 197 (620)
.+||+|.|.| .|-||+.+++.|...|++|+++++....
T Consensus 6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~ 44 (356)
T d1rkxa_ 6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPT 44 (356)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSS
T ss_pred hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence 4789999998 7899999999999999999999987654
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=90.66 E-value=0.096 Score=49.24 Aligned_cols=69 Identities=14% Similarity=0.242 Sum_probs=44.0
Q ss_pred cCcEEEEEeCChhhH----HHHHHHhhC--CCEEE-EECCCCCCCCc---ccc-CCceecCCHHhhhcC--CcEEEEccc
Q 007040 161 RGLVLGIVGRSASAR----ALATRSLSF--KMSVL-YFDVPEGKGKV---TFP-SAARRMDTLNDLLAA--SDVISLHCA 227 (620)
Q Consensus 161 ~GktVGIIGlG~IG~----~vA~~Lkaf--G~~V~-~~dr~~~~~~~---~~~-~g~~~~~sL~eLL~~--sDvVil~lP 227 (620)
+-.+|||||+|.+|. .-+..++.. +++|+ ++|++...... .+. .....++++++++.. -|+|++++|
T Consensus 15 k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~tp 94 (237)
T d2nvwa1 15 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVK 94 (237)
T ss_dssp CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSC
T ss_pred CCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeeccCC
Confidence 446799999998654 334445543 67877 57887643221 111 123446799999864 679999998
Q ss_pred CC
Q 007040 228 VT 229 (620)
Q Consensus 228 lT 229 (620)
..
T Consensus 95 ~~ 96 (237)
T d2nvwa1 95 VP 96 (237)
T ss_dssp HH
T ss_pred Cc
Confidence 44
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=90.62 E-value=0.063 Score=51.43 Aligned_cols=37 Identities=19% Similarity=0.204 Sum_probs=33.6
Q ss_pred eecCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCC
Q 007040 159 RCRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 159 ~L~GktVGIIGlG-~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
+|.||++.|.|.+ .||+++|+.|...|++|+..+++.
T Consensus 2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~ 39 (254)
T d1hdca_ 2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLD 39 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4899999999876 599999999999999999999875
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.61 E-value=0.12 Score=48.70 Aligned_cols=37 Identities=14% Similarity=0.078 Sum_probs=33.1
Q ss_pred eecCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCC
Q 007040 159 RCRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 159 ~L~GktVGIIGlG-~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
+|.||++.|.|.+ .||+++|+.|...|++|+..+++.
T Consensus 2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~ 39 (242)
T d1cyda_ 2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN 39 (242)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4789999999864 699999999999999999999875
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=90.60 E-value=0.17 Score=47.99 Aligned_cols=85 Identities=9% Similarity=0.075 Sum_probs=54.2
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhc--CCcEEEEcccCChh--hH
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLA--ASDVISLHCAVTDE--TI 233 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~--~sDvVil~lPlT~~--T~ 233 (620)
++.||++.|.|-+. ||+++|+.|...|++|+..+++...... ..+++.+ ..+++.+.+=++.. ..
T Consensus 6 ~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~----------~~~~~~~~~g~~~~~~~~Dv~~~~~v~ 75 (260)
T d1h5qa_ 6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVE----------VTEKVGKEFGVKTKAYQCDVSNTDIVT 75 (260)
T ss_dssp CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHH----------HHHHHHHHHTCCEEEEECCTTCHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH----------HHHHHHHHhCCceEEEEccCCCHHHHH
Confidence 68999999998765 9999999999999999999998744321 1122211 24555555554432 33
Q ss_pred hhcCHHHhhccCCCcEEEEcC
Q 007040 234 QIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvg 254 (620)
.++.. ..+...+=-+|||.+
T Consensus 76 ~~~~~-~~~~~g~iDilVnnA 95 (260)
T d1h5qa_ 76 KTIQQ-IDADLGPISGLIANA 95 (260)
T ss_dssp HHHHH-HHHHSCSEEEEEECC
T ss_pred HHHHH-HHHHhCCCcEecccc
Confidence 44432 334444444677765
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=90.49 E-value=0.11 Score=44.61 Aligned_cols=35 Identities=14% Similarity=0.091 Sum_probs=32.1
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
.+++.|||.|.||.++|..++.+|.+|..+.+...
T Consensus 26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~ 60 (125)
T d1ojta2 26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG 60 (125)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecc
Confidence 36899999999999999999999999999998763
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=90.49 E-value=0.13 Score=43.52 Aligned_cols=36 Identities=11% Similarity=-0.010 Sum_probs=33.0
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
.+++|.|||.|.+|.++|..|...|.+|..+++...
T Consensus 29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~ 64 (123)
T d1nhpa2 29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDR 64 (123)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCCEEEEECChHHHHHHHHHhhccceEEEEEEecCc
Confidence 578999999999999999999999999999987653
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=90.43 E-value=0.15 Score=47.24 Aligned_cols=59 Identities=17% Similarity=0.171 Sum_probs=44.0
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhc--CCcEEEEcccCC
Q 007040 163 LVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLA--ASDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~--~sDvVil~lPlT 229 (620)
|+|.|.|. |-||+.+++.|...|++|++.|+...... ....+++++. ..|+|+-+.-..
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~~D~~--------d~~~~~~~l~~~~~d~vih~a~~~ 63 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDIT--------NVLAVNKFFNEKKPNVVINCAAHT 63 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCCTT--------CHHHHHHHHHHHCCSEEEECCCCC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechhccCC--------CHHHHHHHHHHcCCCEEEeecccc
Confidence 67999996 99999999999999999999998753211 1234566766 458877665444
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=90.32 E-value=0.12 Score=43.57 Aligned_cols=35 Identities=14% Similarity=-0.092 Sum_probs=31.9
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
++++.|||-|.+|-++|..|..+|.+|..+.+...
T Consensus 32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~ 66 (122)
T d1xhca2 32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM 66 (122)
T ss_dssp HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred CCcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence 46799999999999999999999999999997653
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.26 E-value=0.078 Score=50.56 Aligned_cols=38 Identities=18% Similarity=0.214 Sum_probs=34.2
Q ss_pred eeecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 158 RRCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 158 ~~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
.+|.||++.|-|. +.||+++|+.|...|++|+..|++.
T Consensus 2 ~rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~ 40 (250)
T d1ydea1 2 TRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDE 40 (250)
T ss_dssp CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 3689999999975 7899999999999999999999865
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=90.23 E-value=0.12 Score=45.44 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=32.2
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGK 197 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~ 197 (620)
.|.+|.|+|.|.+|...+..++++|. .|++.+++...
T Consensus 28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k 65 (176)
T d2fzwa2 28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDK 65 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGG
T ss_pred CCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHH
Confidence 58899999999999999999999996 67788876644
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=90.12 E-value=0.053 Score=51.91 Aligned_cols=38 Identities=11% Similarity=0.064 Sum_probs=33.8
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
.|.||++.|.|.+. ||+++|+.|...|++|+.++++..
T Consensus 5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~ 43 (259)
T d1xq1a_ 5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEY 43 (259)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 58999999997655 999999999999999999998753
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=90.09 E-value=0.14 Score=42.25 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=32.3
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
...+|++|+|||.|+.|..+|.-|...+-+|++..++.
T Consensus 28 ~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~ 65 (107)
T d2gv8a2 28 ELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG 65 (107)
T ss_dssp GGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred hhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence 46899999999999999999999998888766665544
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=90.02 E-value=0.064 Score=51.10 Aligned_cols=36 Identities=22% Similarity=0.135 Sum_probs=32.9
Q ss_pred ecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
|.||++.|.|. +.||+++|+.|...|++|+..+++.
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~ 39 (256)
T d1k2wa_ 3 LDGKTALITGSARGIGRAFAEAYVREGARVAIADINL 39 (256)
T ss_dssp TTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 78999999976 7799999999999999999999865
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=89.98 E-value=0.12 Score=49.03 Aligned_cols=87 Identities=17% Similarity=0.205 Sum_probs=54.2
Q ss_pred eecCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCCh--hhHhh
Q 007040 159 RCRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTD--ETIQI 235 (620)
Q Consensus 159 ~L~GktVGIIGlG-~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~--~T~~l 235 (620)
+|.||++.|-|.+ .||+++|+.|...|++|++.+++...... ....+.+-. ..+++.+.+-++. +...+
T Consensus 2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~-------~~~~l~~~~-g~~~~~~~~Dv~~~~~v~~~ 73 (251)
T d1vl8a_ 2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASE-------AAQKLTEKY-GVETMAFRCDVSNYEEVKKL 73 (251)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-------HHHHHHHHH-CCCEEEEECCTTCHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-------HHHHHHHHh-CCcEEEEEccCCCHHHHHHH
Confidence 5889999999875 59999999999999999999987533220 011122211 2456666666553 34445
Q ss_pred cCHHHhhccCCCcEEEEcC
Q 007040 236 INAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 236 I~~~~L~~MK~gAiLINvg 254 (620)
+.. ..+.+.+=-+|||.+
T Consensus 74 ~~~-~~~~~g~iDiLVnnA 91 (251)
T d1vl8a_ 74 LEA-VKEKFGKLDTVVNAA 91 (251)
T ss_dssp HHH-HHHHHSCCCEEEECC
T ss_pred HHH-HHHHcCCCCEEEECC
Confidence 543 334443334666654
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=89.96 E-value=0.12 Score=49.34 Aligned_cols=87 Identities=17% Similarity=0.145 Sum_probs=54.5
Q ss_pred eecCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCCh--hhHhh
Q 007040 159 RCRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTD--ETIQI 235 (620)
Q Consensus 159 ~L~GktVGIIGlG-~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~--~T~~l 235 (620)
+|.||++.|-|-+ .||+++|+.|...|++|+..+++....+.. ...+.+......++.+.|=.++ +...+
T Consensus 1 rl~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~-------~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~ 73 (258)
T d1iy8a_ 1 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEAS-------KAAVLETAPDAEVLTTVADVSDEAQVEAY 73 (258)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-------HHHHHHHCTTCCEEEEECCTTSHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-------HHHHHhhCCCCeEEEEeccCCCHHHHHHH
Confidence 3789999998765 599999999999999999999876332210 1123333344566666665443 34445
Q ss_pred cCHHHhhccCCCcEEEEc
Q 007040 236 INAECLQHIKPGAFLVNT 253 (620)
Q Consensus 236 I~~~~L~~MK~gAiLINv 253 (620)
++. ..+.+.+=-+|||.
T Consensus 74 ~~~-~~~~~G~iDiLVnn 90 (258)
T d1iy8a_ 74 VTA-TTERFGRIDGFFNN 90 (258)
T ss_dssp HHH-HHHHHSCCSEEEEC
T ss_pred HHH-HHHHhCCCCEEEEC
Confidence 533 33444333466664
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=89.96 E-value=0.031 Score=49.57 Aligned_cols=89 Identities=15% Similarity=0.121 Sum_probs=54.3
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCC-EEEEECCCCCCCCccccCCce---e--cCC-HHhhh-----cCCcEEEEccc
Q 007040 161 RGLVLGIVGR-SASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAAR---R--MDT-LNDLL-----AASDVISLHCA 227 (620)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~~~g~~---~--~~s-L~eLL-----~~sDvVil~lP 227 (620)
.|.+|.|+|. |.+|...+..+++.|. +|++.+++....+.....|.. . ..+ .+++. ...|+|+-+..
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~~g 106 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNN 106 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCC
T ss_pred CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhcccc
Confidence 5788999995 9999999999999885 999999876443322112211 0 011 22222 12677776665
Q ss_pred CChhhHhhcCHHHhhccCCCcEEEEcC
Q 007040 228 VTDETIQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 228 lT~~T~~lI~~~~L~~MK~gAiLINvg 254 (620)
. +.+. ...+..++++..+|.+|
T Consensus 107 ~-~~~~----~~a~~~l~~~G~iv~~G 128 (170)
T d1jvba2 107 S-EKTL----SVYPKALAKQGKYVMVG 128 (170)
T ss_dssp C-HHHH----TTGGGGEEEEEEEEECC
T ss_pred c-chHH----HhhhhhcccCCEEEEec
Confidence 2 2221 12356677777777764
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=89.73 E-value=0.16 Score=46.40 Aligned_cols=36 Identities=17% Similarity=0.064 Sum_probs=32.9
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
..++|.|||.|..|..+|..|+..|++|.++++...
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 38 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ 38 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 567899999999999999999999999999998653
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=89.65 E-value=0.43 Score=45.12 Aligned_cols=151 Identities=12% Similarity=0.096 Sum_probs=97.8
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC----cc----------ccCCceecCCHHhhhcCCcEEE
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK----VT----------FPSAARRMDTLNDLLAASDVIS 223 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~----~~----------~~~g~~~~~sL~eLL~~sDvVi 223 (620)
.|.+.+|.|+|.|.-|..+|+.+...+. +++.+|+..--.. .. .........++.+++..+++++
T Consensus 23 ~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~~~ 102 (222)
T d1vl6a1 23 KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFI 102 (222)
T ss_dssp CTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEE
T ss_pred ChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCcccccccHHHHHHHhhhcchhhhcchHhhccCcceec
Confidence 4789999999999999999999997777 8999998731100 00 0011122457888999999877
Q ss_pred EcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEEEcCCC
Q 007040 224 LHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRS 303 (620)
Q Consensus 224 l~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVIlTPHi 303 (620)
..- +.+++..+.+..|.+..++.=.|...---+++ .+-..|+.--| .-.|..+. +..|+++=|=+
T Consensus 103 g~~-----~~~~~~~e~m~~~~~rPIIFpLSNPt~~~e~~--~a~~~G~ai~A----tGsp~~p~----Q~NN~yiFPGi 167 (222)
T d1vl6a1 103 GVS-----RGNILKPEWIKKMSRKPVIFALANPVPEIDPE--LAREAGAFIVA----TGRSDHPN----QVNNLLAFPGI 167 (222)
T ss_dssp ECS-----CSSCSCHHHHTTSCSSCEEEECCSSSCSSCHH--HHHHTTCSEEE----ESCTTSSS----BCCGGGTHHHH
T ss_pred ccc-----ccccccHHHHhhcCCCCEEEecCCCccchhhh--hheeccceEEe----cCCCCCCc----cCcceeecchH
Confidence 655 46789999999999999999999876655554 33345553311 11232222 45676665542
Q ss_pred CCC-----cHHHHHHHHHHHHHHHHHH
Q 007040 304 ADY-----SEEVWMEIRDKAISVLQTF 325 (620)
Q Consensus 304 Ag~-----T~ea~~~~~~~a~enL~~~ 325 (620)
+-. +. ..++|...+++.|.++
T Consensus 168 glGal~~~ar-itd~m~~aAA~alA~~ 193 (222)
T d1vl6a1 168 MKGAVEKRSK-ITKNMLLSAVEAIARS 193 (222)
T ss_dssp HHHHHHHCSC-CCHHHHHHHHHHHHHT
T ss_pred HHHHHHhccc-cchHHHHHHHHHHHhc
Confidence 111 11 2356666677777664
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=89.61 E-value=0.1 Score=46.33 Aligned_cols=67 Identities=7% Similarity=0.034 Sum_probs=43.7
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCC--EEEEECCCCCCCCc------cccCCceecCCHHhhhcCCcEEEEcccCC
Q 007040 163 LVLGIVG-RSASARALATRSLSFKM--SVLYFDVPEGKGKV------TFPSAARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG~--~V~~~dr~~~~~~~------~~~~g~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
+||.|.| .|.||+.+++.|...|+ .|+...|++..... ...........+.+++..+|+|+.+....
T Consensus 4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~~~ 79 (252)
T d2q46a1 4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSAV 79 (252)
T ss_dssp CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCCC
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCcEEEEeeeccccccccccccceeeEEEEeec
Confidence 4789998 79999999999998885 56666665422110 00011112334567788899998776543
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=89.56 E-value=0.081 Score=50.10 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=32.1
Q ss_pred ecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
|.||++.|-|. +.||+++|+.|...|++|+..+++.
T Consensus 2 l~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~ 38 (243)
T d1q7ba_ 2 FEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSE 38 (243)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 68999988874 5699999999999999999999875
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=89.50 E-value=0.15 Score=46.07 Aligned_cols=34 Identities=12% Similarity=-0.090 Sum_probs=31.5
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
-++|.|||.|.+|-..|..|...|++|.++++..
T Consensus 6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 4579999999999999999999999999999864
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.46 E-value=0.086 Score=50.12 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=33.3
Q ss_pred eecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
+|.||++.|-|. +.||+++|+.|...|++|++.+++.
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~ 40 (244)
T d1nffa_ 3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILD 40 (244)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 479999999987 5599999999999999999999875
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=89.45 E-value=0.14 Score=48.19 Aligned_cols=38 Identities=16% Similarity=0.023 Sum_probs=33.5
Q ss_pred eeecCcEEEEEeCC---hhhHHHHHHHhhCCCEEEEECCCC
Q 007040 158 RRCRGLVLGIVGRS---ASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 158 ~~L~GktVGIIGlG---~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
.+|.||++.|.|.+ .||+++|+.|...|++|+..++..
T Consensus 4 ~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~ 44 (256)
T d1ulua_ 4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE 44 (256)
T ss_dssp ECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcH
Confidence 36899999999985 599999999999999999888764
|
| >d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Escherichia coli [TaxId: 562]
Probab=89.28 E-value=0.26 Score=44.58 Aligned_cols=96 Identities=8% Similarity=0.011 Sum_probs=64.8
Q ss_pred eecCcEEEEEeCC--hhhHHHHHHHhhCCCEEEEECCCCCCCCcc-----------ccCCceecCCHHhhhcCCcEEEEc
Q 007040 159 RCRGLVLGIVGRS--ASARALATRSLSFKMSVLYFDVPEGKGKVT-----------FPSAARRMDTLNDLLAASDVISLH 225 (620)
Q Consensus 159 ~L~GktVGIIGlG--~IG~~vA~~LkafG~~V~~~dr~~~~~~~~-----------~~~g~~~~~sL~eLL~~sDvVil~ 225 (620)
.+.|.+|++||=| ++..+++..+..||++|.++.|..-..... .........++++.+..+|+|..-
T Consensus 2 ~~~~l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~ 81 (183)
T d1duvg2 2 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTD 81 (183)
T ss_dssp CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEEC
T ss_pred CcCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHHhcCCceEEEechhhccccCCEEEEE
Confidence 4689999999965 689999999999999999999864222110 011234567899999999999874
Q ss_pred ccCC----hh---h-------HhhcCHHHhhccCCCcEEEEcC
Q 007040 226 CAVT----DE---T-------IQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 226 lPlT----~~---T-------~~lI~~~~L~~MK~gAiLINvg 254 (620)
.=.. .+ . ...++...+...+++++|.-+.
T Consensus 82 ~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~MH~L 124 (183)
T d1duvg2 82 VWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCL 124 (183)
T ss_dssp CSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred ehhhhhhhhhhhhhhhhhhcccccccHHHHhcccCCeEEEccC
Confidence 4321 10 0 1123444555677888888764
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=89.25 E-value=0.23 Score=46.75 Aligned_cols=36 Identities=17% Similarity=0.092 Sum_probs=32.7
Q ss_pred ecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
|.||++.|-|. +.||+++|+.|...|++|+..+++.
T Consensus 3 L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~ 39 (242)
T d1ulsa_ 3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEE 39 (242)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 78999999986 5599999999999999999999875
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=89.18 E-value=0.16 Score=42.27 Aligned_cols=35 Identities=17% Similarity=0.067 Sum_probs=32.0
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
.+++.|||-|.+|-++|..|+.+|.+|..+.+...
T Consensus 21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~ 55 (115)
T d1lvla2 21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARER 55 (115)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHhhcccceEEEeeecc
Confidence 36899999999999999999999999999988753
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=89.05 E-value=0.23 Score=42.46 Aligned_cols=63 Identities=22% Similarity=0.173 Sum_probs=39.6
Q ss_pred EEEEEeCChhhHHHHHHHh-hCCCEEEEE-CCCCCCCCccccCCc--eecCCHHhhhcC-CcEEEEccc
Q 007040 164 VLGIVGRSASARALATRSL-SFKMSVLYF-DVPEGKGKVTFPSAA--RRMDTLNDLLAA-SDVISLHCA 227 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~Lk-afG~~V~~~-dr~~~~~~~~~~~g~--~~~~sL~eLL~~-sDvVil~lP 227 (620)
++.|+|+|.+|+.+++.+. .-|+++++| |..+....... .|+ ...+.++++..+ .+++++++|
T Consensus 5 ~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I-~Gi~V~~~~~l~~~~~~~i~iai~~i~ 72 (126)
T d2dt5a2 5 GLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPV-RGGVIEHVDLLPQRVPGRIEIALLTVP 72 (126)
T ss_dssp EEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEE-TTEEEEEGGGHHHHSTTTCCEEEECSC
T ss_pred eEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEE-CCEEEecHHHHHHHHhhcccEEEEeCC
Confidence 6999999999999998775 457887765 65543322111 232 234556555543 466666666
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=89.03 E-value=0.11 Score=50.41 Aligned_cols=69 Identities=7% Similarity=0.005 Sum_probs=48.6
Q ss_pred CcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCc---cccCCce-----e---cCCHHhhhcCCcEEEEcccCC
Q 007040 162 GLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKV---TFPSAAR-----R---MDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 162 GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~---~~~~g~~-----~---~~sL~eLL~~sDvVil~lPlT 229 (620)
.|+|.|+| .|.||+.+++.|.+.|++|++..|+...... ....++. . .+.++.++..+|++++..+..
T Consensus 3 kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~~~~ 82 (350)
T d1xgka_ 3 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTSQ 82 (350)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCST
T ss_pred CCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeecccc
Confidence 57899998 6999999999999999999999887643220 0111221 1 112566788899999887754
Q ss_pred h
Q 007040 230 D 230 (620)
Q Consensus 230 ~ 230 (620)
.
T Consensus 83 ~ 83 (350)
T d1xgka_ 83 A 83 (350)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=89.02 E-value=0.096 Score=49.29 Aligned_cols=38 Identities=16% Similarity=0.075 Sum_probs=34.9
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~ 195 (620)
..|++++|.|||+|.+|..+|..|...|. ++..+|...
T Consensus 26 ~kL~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 64 (247)
T d1jw9b_ 26 EALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 64 (247)
T ss_dssp HHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred HHHhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence 46999999999999999999999999999 899999754
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=88.97 E-value=0.15 Score=47.02 Aligned_cols=36 Identities=17% Similarity=0.052 Sum_probs=32.6
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
..++|.|||.|..|-..|..|+..|++|.+++....
T Consensus 29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~ 64 (370)
T d2iida1 29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASER 64 (370)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 456899999999999999999999999999997653
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=88.92 E-value=0.19 Score=45.77 Aligned_cols=39 Identities=21% Similarity=0.214 Sum_probs=35.2
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCC
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGK 197 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~ 197 (620)
...+++|.|||-|..|-+.|..|...|++|..|++....
T Consensus 40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~ 78 (179)
T d1ps9a3 40 AVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI 78 (179)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred CCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCcc
Confidence 357899999999999999999999999999999987643
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=88.76 E-value=0.23 Score=42.54 Aligned_cols=37 Identities=16% Similarity=0.176 Sum_probs=33.7
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGK 197 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~ 197 (620)
.++++.|||-|.+|-++|..|+..|.+|..+++....
T Consensus 34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~ 70 (133)
T d1q1ra2 34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARV 70 (133)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccc
Confidence 4688999999999999999999999999999987643
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=88.70 E-value=0.14 Score=47.88 Aligned_cols=36 Identities=11% Similarity=0.049 Sum_probs=32.6
Q ss_pred ecCcEEEEEeCCh---hhHHHHHHHhhCCCEEEEECCCC
Q 007040 160 CRGLVLGIVGRSA---SARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 160 L~GktVGIIGlG~---IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
|.||++.|.|.+. ||.++|+.|...|++|+..+++.
T Consensus 3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~ 41 (258)
T d1qsga_ 3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND 41 (258)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCH
Confidence 7899999998764 99999999999999999998874
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=88.68 E-value=0.15 Score=48.15 Aligned_cols=37 Identities=22% Similarity=0.190 Sum_probs=33.2
Q ss_pred eecCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCC
Q 007040 159 RCRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 159 ~L~GktVGIIGlG-~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
+|.||++.|.|-+ .||+++|+.|...|++|++.|++.
T Consensus 2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~ 39 (247)
T d2ew8a1 2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVP 39 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence 4889999999875 599999999999999999999865
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=88.60 E-value=0.18 Score=48.02 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=33.2
Q ss_pred eecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
+|.||++.|.|. +.||+++|+.|...|++|+..+++.
T Consensus 3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~ 40 (268)
T d2bgka1 3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIAD 40 (268)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 589999999985 5599999999999999999999875
|
| >d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: L-alanine dehydrogenase-like domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=88.53 E-value=0.73 Score=42.40 Aligned_cols=101 Identities=17% Similarity=0.153 Sum_probs=73.0
Q ss_pred HHHHHHHhhCCCEEEEECCCCCCCC---ccc-cCCceecCCHHhhhcCCcEEEEc-ccCChhhHhhcCHHHhhccCCCcE
Q 007040 175 RALATRSLSFKMSVLYFDVPEGKGK---VTF-PSAARRMDTLNDLLAASDVISLH-CAVTDETIQIINAECLQHIKPGAF 249 (620)
Q Consensus 175 ~~vA~~LkafG~~V~~~dr~~~~~~---~~~-~~g~~~~~sL~eLL~~sDvVil~-lPlT~~T~~lI~~~~L~~MK~gAi 249 (620)
=..++.|...|++|++=.-...... ..+ ..|+...++-++++.++|+|+.. .|...+ .+.+.++.||+|++
T Consensus 20 P~~vkkl~~~G~~V~vE~gaG~~a~fsD~~Y~~aGA~i~~~~~~~~~~~diilkV~~P~~~e----~~~~ei~~lk~g~~ 95 (194)
T d1l7da2 20 PEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAE----EGTDEVALIKEGAV 95 (194)
T ss_dssp HHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEEECCCCGG----GSCCGGGGSCTTCE
T ss_pred HHHHHHHHHCCCEEEEEcCcccccCCCHHHHHHhhhhcchhhhhhhhcccceeEecCCcccc----cchhHhhhccCceE
Confidence 4678889999999998654332111 122 23555667889999999988754 554432 23457899999999
Q ss_pred EEEcCCChhhcHHHHHHHHHcCCcceeEeecC
Q 007040 250 LVNTGSSQLLDDCAVKQLLIDGTLAGCALDGA 281 (620)
Q Consensus 250 LINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~ 281 (620)
+|..-- .....+++++|.+.++...++|..
T Consensus 96 li~~l~--p~~~~~~~~~l~~~~it~~a~e~i 125 (194)
T d1l7da2 96 LMCHLG--ALTNRPVVEALTKRKITAYAMELM 125 (194)
T ss_dssp EEEECC--GGGCHHHHHHHHHTTCEEEEGGGC
T ss_pred EEEecc--cccchhHHHHHHhcCceEEeeecc
Confidence 998653 456788999999999998888765
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=88.13 E-value=0.48 Score=41.49 Aligned_cols=38 Identities=18% Similarity=0.117 Sum_probs=33.1
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKG 198 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~ 198 (620)
.|.+|.|+|.|.+|...+..++.+|. +|++.|++....
T Consensus 28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl 66 (175)
T d1cdoa2 28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKF 66 (175)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH
T ss_pred CCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHH
Confidence 68899999999999999999998877 799999887543
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=88.09 E-value=0.17 Score=45.48 Aligned_cols=34 Identities=18% Similarity=0.203 Sum_probs=31.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
++|.|||.|..|-..|..|...|++|++++.+..
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~ 34 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSAR 34 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 4699999999999999999999999999998653
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.09 E-value=0.48 Score=43.46 Aligned_cols=70 Identities=14% Similarity=0.074 Sum_probs=49.5
Q ss_pred ecCcEEEEEe-CChhhHHHHHHHhhCCC--EEEEECCCCCCCCccccCCc-------eecCCHHhhhcCCcEEEEcccCC
Q 007040 160 CRGLVLGIVG-RSASARALATRSLSFKM--SVLYFDVPEGKGKVTFPSAA-------RRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 160 L~GktVGIIG-lG~IG~~vA~~LkafG~--~V~~~dr~~~~~~~~~~~g~-------~~~~sL~eLL~~sDvVil~lPlT 229 (620)
..+++|.|.| .|-||+.+++.|..-|. +|++++|++..........+ ...+++.+.+..+|+|+.++..+
T Consensus 12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~~ 91 (232)
T d2bkaa1 12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT 91 (232)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeeccccccccccccccccccccccccc
Confidence 4678899885 89999999999987774 89999987644331111111 12345667788999999887654
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.88 E-value=0.35 Score=47.10 Aligned_cols=39 Identities=23% Similarity=0.137 Sum_probs=33.8
Q ss_pred eecCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCCCC
Q 007040 159 RCRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPEGK 197 (620)
Q Consensus 159 ~L~GktVGIIGlG-~IG~~vA~~LkafG~~V~~~dr~~~~ 197 (620)
+|.||++.|-|.+ .||+++|+.|...|++|++.|+....
T Consensus 4 ~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~ 43 (302)
T d1gz6a_ 4 RFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDF 43 (302)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCT
T ss_pred CcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchh
Confidence 4899999888765 59999999999999999999987643
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=87.65 E-value=0.14 Score=45.84 Aligned_cols=90 Identities=12% Similarity=0.027 Sum_probs=60.8
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCce------ecCCHHhhh-----cCCcEEEEcccC
Q 007040 161 RGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR------RMDTLNDLL-----AASDVISLHCAV 228 (620)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~------~~~sL~eLL-----~~sDvVil~lPl 228 (620)
.|.+|.|.|. |.+|...++.++..|++|++..++....+.....|.. .....+.++ ...|+|+-++.
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG- 107 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG- 107 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC-
T ss_pred CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEecC-
Confidence 5889999888 6699999999999999999998776433211122211 111122222 33799998885
Q ss_pred ChhhHhhcCHHHhhccCCCcEEEEcCCC
Q 007040 229 TDETIQIINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 229 T~~T~~lI~~~~L~~MK~gAiLINvgRG 256 (620)
.++. ...++.|+++..+|.+|..
T Consensus 108 -~~~~----~~~~~~l~~~G~~v~~G~~ 130 (182)
T d1v3va2 108 -GEFL----NTVLSQMKDFGKIAICGAI 130 (182)
T ss_dssp -HHHH----HHHGGGEEEEEEEEECCCG
T ss_pred -chhh----hhhhhhccCCCeEEeecce
Confidence 2221 3568889999999998754
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=87.63 E-value=0.12 Score=49.02 Aligned_cols=38 Identities=13% Similarity=0.043 Sum_probs=33.7
Q ss_pred eeecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 158 RRCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 158 ~~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
..|.||++.|.|. +.||+++|+.|...|++|+.++++.
T Consensus 6 f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~ 44 (251)
T d2c07a1 6 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQ 44 (251)
T ss_dssp CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence 4578999999986 5799999999999999999999865
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=87.55 E-value=0.18 Score=47.79 Aligned_cols=85 Identities=19% Similarity=0.187 Sum_probs=53.3
Q ss_pred eecCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCCh--hhHhh
Q 007040 159 RCRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTD--ETIQI 235 (620)
Q Consensus 159 ~L~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~--~T~~l 235 (620)
+|.||++.|-| .+.||+++|+.|...|++|+..+++....+ ...+++-....+..+.+=+++ +...+
T Consensus 3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~----------~~~~~~~~~~~~~~~~~Dv~~~~~v~~~ 72 (251)
T d1zk4a1 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGE----------KAAKSVGTPDQIQFFQHDSSDEDGWTKL 72 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH----------HHHHHHCCTTTEEEEECCTTCHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH----------HHHHHhCCCCcEEEEEccCCCHHHHHHH
Confidence 48999999997 556999999999999999999998653221 011222223455566655543 34445
Q ss_pred cCHHHhhccCCCcEEEEcC
Q 007040 236 INAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 236 I~~~~L~~MK~gAiLINvg 254 (620)
+.. ..+.+.+=-+|||.+
T Consensus 73 ~~~-~~~~~G~iDiLVnnA 90 (251)
T d1zk4a1 73 FDA-TEKAFGPVSTLVNNA 90 (251)
T ss_dssp HHH-HHHHHSSCCEEEECC
T ss_pred HHH-HHHHhCCceEEEecc
Confidence 543 333333334777765
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=87.45 E-value=0.093 Score=49.95 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=33.0
Q ss_pred eecCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCC
Q 007040 159 RCRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 159 ~L~GktVGIIGlG-~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
+|.||++.|.|-+ .||+++|+.|...|++|+..+++.
T Consensus 3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~ 40 (253)
T d1hxha_ 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINE 40 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4899999999854 699999999999999999999865
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.41 E-value=0.26 Score=47.91 Aligned_cols=88 Identities=23% Similarity=0.338 Sum_probs=56.7
Q ss_pred eecCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhh---cCCcEEEEcccCCh--hh
Q 007040 159 RCRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLL---AASDVISLHCAVTD--ET 232 (620)
Q Consensus 159 ~L~GktVGIIGlG-~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL---~~sDvVil~lPlT~--~T 232 (620)
.|.||++.|.|.+ .||+++|+.|...|++|++.+++....... ...|...+ ....++.+.|=+++ +.
T Consensus 9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~-------~~el~~~~~~~~~~~~~~~~~Dvs~~~~v 81 (297)
T d1yxma1 9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSA-------ADELQANLPPTKQARVIPIQCNIRNEEEV 81 (297)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-------HHHHHHTSCTTCCCCEEEEECCTTCHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-------HHHHHhhhccccCceEEEEeccCCCHHHH
Confidence 4899999999764 599999999999999999999876332210 11222211 23467766665553 34
Q ss_pred HhhcCHHHhhccCCCcEEEEcC
Q 007040 233 IQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 233 ~~lI~~~~L~~MK~gAiLINvg 254 (620)
..++.. ..+.+.+=-+|||.+
T Consensus 82 ~~~~~~-~~~~~G~iDiLVnnA 102 (297)
T d1yxma1 82 NNLVKS-TLDTFGKINFLVNNG 102 (297)
T ss_dssp HHHHHH-HHHHHSCCCEEEECC
T ss_pred HHHHHH-HHHHhCCeEEEEeec
Confidence 455543 345555555777765
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=87.32 E-value=0.12 Score=49.56 Aligned_cols=36 Identities=28% Similarity=0.280 Sum_probs=33.0
Q ss_pred ecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
|.||++.|-|. +.||+++|+.|...|++|+..+++.
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~ 39 (276)
T d1bdba_ 3 LKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSA 39 (276)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 78999999975 6899999999999999999999875
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=87.18 E-value=0.45 Score=44.94 Aligned_cols=87 Identities=9% Similarity=0.062 Sum_probs=55.7
Q ss_pred eecCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCC-h--hhHh
Q 007040 159 RCRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVT-D--ETIQ 234 (620)
Q Consensus 159 ~L~GktVGIIGlG-~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT-~--~T~~ 234 (620)
+|.||++.|.|-+ .||.++|+.|...|++|+...++..... ....+........+.+.++=++ + +...
T Consensus 2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~--------~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 73 (254)
T d1sbya1 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPT--------ALAELKAINPKVNITFHTYDVTVPVAESKK 73 (254)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHH--------HHHHHHHHCTTSEEEEEECCTTSCHHHHHH
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHH--------HHHHHHhhCCCCCEEEEEeecCCCHHHHHH
Confidence 4789999999877 5999999999999999888876553321 0123444555667777766665 2 3445
Q ss_pred hcCHHHhhccCCCcEEEEcC
Q 007040 235 IINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 235 lI~~~~L~~MK~gAiLINvg 254 (620)
+++. ..+...+=-+|||.+
T Consensus 74 ~~~~-~~~~~g~iDilvnnA 92 (254)
T d1sbya1 74 LLKK-IFDQLKTVDILINGA 92 (254)
T ss_dssp HHHH-HHHHHSCCCEEEECC
T ss_pred HHHH-HHHHcCCCCEEEeCC
Confidence 5543 233333222666654
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=86.84 E-value=0.41 Score=46.38 Aligned_cols=67 Identities=16% Similarity=0.027 Sum_probs=45.2
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCC--ce-----ecCCHHhhhcCCcEEEEccc
Q 007040 161 RGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSA--AR-----RMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g--~~-----~~~sL~eLL~~sDvVil~lP 227 (620)
.+|+|.|.| .|-||+.+++.|..-|++|+++|+............ .. ....+.+++...|.|+.+..
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a~ 88 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAA 88 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHHhhcCCeEeeccc
Confidence 578899886 899999999999999999999987543322111110 11 12234455778898776553
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=86.83 E-value=1.2 Score=39.90 Aligned_cols=96 Identities=9% Similarity=0.144 Sum_probs=56.3
Q ss_pred CcEEEEEe-CChhhHHHHHHHhhC-CCEEEEECCCCCCCCcc---cc----CC-ceecCCHHhhhcCCcEEEEcccCChh
Q 007040 162 GLVLGIVG-RSASARALATRSLSF-KMSVLYFDVPEGKGKVT---FP----SA-ARRMDTLNDLLAASDVISLHCAVTDE 231 (620)
Q Consensus 162 GktVGIIG-lG~IG~~vA~~Lkaf-G~~V~~~dr~~~~~~~~---~~----~g-~~~~~sL~eLL~~sDvVil~lPlT~~ 231 (620)
..+||||| .|-.|+++.++|..+ .+++.+.......+... .+ .. .......++.+..+|+|++++|....
T Consensus 5 kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~~s 84 (183)
T d2cvoa1 5 EVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLPHGTT 84 (183)
T ss_dssp CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCSSSHH
T ss_pred ccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccccchH
Confidence 34699997 699999999999976 55766664333232210 00 00 01122344567899999999996633
Q ss_pred hHhhcCHHHhhccCCCcEEEEcCCChhhcHHH
Q 007040 232 TIQIINAECLQHIKPGAFLVNTGSSQLLDDCA 263 (620)
Q Consensus 232 T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~A 263 (620)
.+....+......|+.+.+.-....+
T Consensus 85 ------~~~~~~l~~~~~~v~~~~~~~~~~~~ 110 (183)
T d2cvoa1 85 ------QEIIKGLPQELKIVDLSADFRLRDIN 110 (183)
T ss_dssp ------HHHHHTSCSSCEEEECSSTTTCSCHH
T ss_pred ------HHHHHHHHhcCcccccchhhhccccc
Confidence 23334444455566655554444333
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=86.70 E-value=0.19 Score=44.25 Aligned_cols=65 Identities=15% Similarity=0.108 Sum_probs=44.8
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCC-------EEEEECCCCCCCC----------cccc--CCceecCCHHhhhcCCcEE
Q 007040 163 LVLGIVG-RSASARALATRSLSFKM-------SVLYFDVPEGKGK----------VTFP--SAARRMDTLNDLLAASDVI 222 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG~-------~V~~~dr~~~~~~----------~~~~--~g~~~~~sL~eLL~~sDvV 222 (620)
.+|.||| .|.+|..+|-.|..-++ .+..+|....... ..+. .......+..+.+.+||+|
T Consensus 4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvV 83 (154)
T d5mdha1 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVA 83 (154)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSEE
T ss_pred eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCceEE
Confidence 4799999 59999999999874332 6788887543221 0111 1223456788999999999
Q ss_pred EEccc
Q 007040 223 SLHCA 227 (620)
Q Consensus 223 il~lP 227 (620)
+++.-
T Consensus 84 Vitag 88 (154)
T d5mdha1 84 ILVGS 88 (154)
T ss_dssp EECCS
T ss_pred EEecc
Confidence 99874
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=86.57 E-value=0.11 Score=49.55 Aligned_cols=86 Identities=19% Similarity=0.274 Sum_probs=52.7
Q ss_pred eecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCCh--hhHhh
Q 007040 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTD--ETIQI 235 (620)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~--~T~~l 235 (620)
+|.||++.|-|- +.||+++|+.|...|++|+..+++....+. ....+.+. ..+++.+.+=+++ +...+
T Consensus 8 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~-------~~~~l~~~--g~~~~~~~~Dvs~~~~~~~~ 78 (255)
T d1fmca_ 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANH-------VVDEIQQL--GGQAFACRCDITSEQELSAL 78 (255)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHH-------HHHHHHHT--TCCEEEEECCTTCHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH-------HHHHHHHc--CCcEEEEEccCCCHHHHHHH
Confidence 589999998876 569999999999999999999986532210 01122221 2356666665553 23344
Q ss_pred cCHHHhhccCCCcEEEEcC
Q 007040 236 INAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 236 I~~~~L~~MK~gAiLINvg 254 (620)
++ ...+.+.+=-+|||.+
T Consensus 79 ~~-~~~~~~g~iDilvnnA 96 (255)
T d1fmca_ 79 AD-FAISKLGKVDILVNNA 96 (255)
T ss_dssp HH-HHHHHHSSCCEEEECC
T ss_pred HH-HHHHHcCCCCEeeeCC
Confidence 43 2333343334666654
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=86.36 E-value=0.24 Score=47.27 Aligned_cols=38 Identities=16% Similarity=0.019 Sum_probs=33.3
Q ss_pred eecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
+|.||++.|.|. +.||+++|+.|...|++|+..+++..
T Consensus 2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~ 40 (272)
T d1xkqa_ 2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSE 40 (272)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 478999988875 56999999999999999999998753
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=86.23 E-value=0.26 Score=46.04 Aligned_cols=36 Identities=11% Similarity=0.030 Sum_probs=32.3
Q ss_pred ecCcEEEEEeC-Ch--hhHHHHHHHhhCCCEEEEECCCC
Q 007040 160 CRGLVLGIVGR-SA--SARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 160 L~GktVGIIGl-G~--IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
|.||++.|.|. |. ||.++|+.|...|++|+..+++.
T Consensus 4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~ 42 (268)
T d2h7ma1 4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR 42 (268)
T ss_dssp TTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCCh
Confidence 78999999996 54 99999999999999999988765
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.22 E-value=0.47 Score=42.53 Aligned_cols=64 Identities=16% Similarity=0.035 Sum_probs=42.6
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCC--EEEEECCCCCCCCccccCCceecCCH----HhhhcCCcEEEEcccCC
Q 007040 163 LVLGIVGR-SASARALATRSLSFKM--SVLYFDVPEGKGKVTFPSAARRMDTL----NDLLAASDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafG~--~V~~~dr~~~~~~~~~~~g~~~~~sL----~eLL~~sDvVil~lPlT 229 (620)
|+|.|+|. |-||+.+++.|...|. +|+...|+......... ....++ +.+....|+|+.|+-.+
T Consensus 3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~~~~~---~~~~d~~~~~~~~~~~~d~vi~~~g~~ 73 (212)
T d2a35a1 3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLD---NPVGPLAELLPQLDGSIDTAFCCLGTT 73 (212)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCCTTEE---CCBSCHHHHGGGCCSCCSEEEECCCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhccccc---ccccchhhhhhccccchheeeeeeeee
Confidence 78999987 9999999999999897 67777766533221111 111232 33444579999887554
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=85.77 E-value=0.39 Score=44.16 Aligned_cols=37 Identities=22% Similarity=0.088 Sum_probs=34.2
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
-.+++|.|||.|..|-..|..|+..|++|..++....
T Consensus 47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~ 83 (233)
T d1djqa3 47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK 83 (233)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence 4789999999999999999999999999999997664
|
| >d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: Dhaf3308-like family: Dhaf3308-like domain: Hypothetical protein Dhaf 3308 species: Desulfitobacterium hafniense [TaxId: 49338]
Probab=85.76 E-value=0.54 Score=44.98 Aligned_cols=96 Identities=14% Similarity=0.253 Sum_probs=64.6
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC--
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN-- 237 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~-- 237 (620)
..|++|++||+- +..+.++.-|++++++++++.... .....-++++++||+|++.-. -++|
T Consensus 120 ~~g~kV~vIG~~----P~v~~l~~~~~~~~VlE~~p~~gd-------~p~~~~~~lLp~aD~viiTGs------TlvN~T 182 (251)
T d2h1qa1 120 VKGKKVGVVGHF----PHLESLLEPICDLSILEWSPEEGD-------YPLPASEFILPECDYVYITCA------SVVDKT 182 (251)
T ss_dssp TTTSEEEEESCC----TTHHHHHTTTSEEEEEESSCCTTC-------EEGGGHHHHGGGCSEEEEETH------HHHHTC
T ss_pred cCCCEEEEEecc----hhHHHHHhcCCcEEEEeCCCCCCC-------CCchHHHHhhhcCCEEEEEec------hhhcCC
Confidence 479999999874 566677888999999999875433 122346789999999997643 1333
Q ss_pred -HHHhhccCCCcEEEEcCCC------------------hhhcHHHHHHHHHcCC
Q 007040 238 -AECLQHIKPGAFLVNTGSS------------------QLLDDCAVKQLLIDGT 272 (620)
Q Consensus 238 -~~~L~~MK~gAiLINvgRG------------------~vVDe~AL~~AL~~G~ 272 (620)
..+|++.|+.+.+|=+|=. -++|.+.+.+.+.+|.
T Consensus 183 l~~LL~~~~~a~~vvl~GPS~p~~P~lf~~Gv~~lag~~v~d~~~~~~~i~~Gg 236 (251)
T d2h1qa1 183 LPRLLELSRNARRITLVGPGTPLAPVLFEHGLQELSGFMVKDNARAFRIVAGAE 236 (251)
T ss_dssp HHHHHHHTTTSSEEEEESTTCCCCGGGGGTTCSEEEEEEESCHHHHHHHHTTSS
T ss_pred HHHHHHhCCcCCEEEEECCCcccCHHHHhcCCceEeEEEEeCHHHHHHHHHcCC
Confidence 3467777777666655411 1356666666666553
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.72 E-value=0.52 Score=44.11 Aligned_cols=41 Identities=17% Similarity=0.039 Sum_probs=35.6
Q ss_pred eecCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCCCCCC
Q 007040 159 RCRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPEGKGK 199 (620)
Q Consensus 159 ~L~GktVGIIGlG-~IG~~vA~~LkafG~~V~~~dr~~~~~~ 199 (620)
.|.||++.|-|.+ .||+++|+.|...|++|++.+++.....
T Consensus 4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~ 45 (237)
T d1uzma1 4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK 45 (237)
T ss_dssp CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhc
Confidence 4799999999876 5999999999999999999998865443
|
| >d1hcda_ b.42.5.2 (A:) Histidine-rich actin-binding protein (hisactophilin) {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: beta-Trefoil superfamily: Actin-crosslinking proteins family: Histidine-rich actin-binding protein (hisactophilin) domain: Histidine-rich actin-binding protein (hisactophilin) species: Dictyostelium discoideum [TaxId: 44689]
Probab=85.63 E-value=0.89 Score=38.47 Aligned_cols=83 Identities=16% Similarity=0.245 Sum_probs=59.6
Q ss_pred EEEEecCCceEEeeecccccceEEeeeccccCCCccceEEEEecCccccccccccCCceeeecccceEEEeecccccccc
Q 007040 510 ALYARDRPALHISRQRHKGGGWILETMSNVTKRDPAAQFLICKSKDTIGLRSFTAGGKLLQINRRMEFVFASHSFDAWES 589 (620)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (620)
||| +..|-|++.. ++| +|+. -...++-.+|-|..+..+|-|||. -||.|.+...=.++--.+...-||-
T Consensus 5 ~lr--s~~gkyL~a~---~~~--v~~~--~~~~~~~~~F~ve~~~g~iaLks~--~GkYlsa~~~g~l~~~~~~~~~~E~ 73 (118)
T d1hcda_ 5 AFK--SHHGHFLSAE---GEA--VKTH--HGHHDHHTHFHVENHGGKVALKTH--CGKYLSIGDHKQVYLSHHLHGDHSL 73 (118)
T ss_dssp EEE--SSTTCEEEEE---TTE--EEEE--CSCSSCCCCCEEEEETTEEEEESS--SSCEEEEEETTEEEEECCCSSSSSS
T ss_pred EeE--cCCCcEEeec---CCc--eEee--CCCCCCCceEEEEcCCCEEEEEeC--CCCEEEecCCCcEEEeccCCCCceE
Confidence 454 4778888754 333 5543 466688999999555699999994 6899999877667777788899999
Q ss_pred ceeccccceeeeec
Q 007040 590 WAIEGPLEECRLVN 603 (620)
Q Consensus 590 ~~~~~~~~~~~~~~ 603 (620)
|.+|=+---+.|..
T Consensus 74 F~ie~~~g~valrs 87 (118)
T d1hcda_ 74 FHLEHHGGKVSIKG 87 (118)
T ss_dssp BEEEEETTEEEEEC
T ss_pred EEEEECCCEEEEEe
Confidence 99874322255543
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.43 E-value=0.34 Score=41.93 Aligned_cols=33 Identities=15% Similarity=0.049 Sum_probs=30.5
Q ss_pred EEEEeCChhhHHHHHHHhhCCCEEEEECCCCCC
Q 007040 165 LGIVGRSASARALATRSLSFKMSVLYFDVPEGK 197 (620)
Q Consensus 165 VGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~ 197 (620)
|.|||.|..|...|..|...|.+|++++++...
T Consensus 8 viViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~ 40 (297)
T d2bcgg1 8 VIVLGTGITECILSGLLSVDGKKVLHIDKQDHY 40 (297)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred EEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCC
Confidence 889999999999999999999999999987643
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=85.36 E-value=0.29 Score=46.41 Aligned_cols=36 Identities=19% Similarity=0.027 Sum_probs=32.8
Q ss_pred eecCcEEEEEeCC---hhhHHHHHHHhhCCCEEEEECCC
Q 007040 159 RCRGLVLGIVGRS---ASARALATRSLSFKMSVLYFDVP 194 (620)
Q Consensus 159 ~L~GktVGIIGlG---~IG~~vA~~LkafG~~V~~~dr~ 194 (620)
.|.||++.|-|.+ .||+++|+.|...|++|+..++.
T Consensus 5 ~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~ 43 (297)
T d1d7oa_ 5 DLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWV 43 (297)
T ss_dssp CCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEH
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence 5899999999986 59999999999999999988764
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=85.34 E-value=0.49 Score=43.71 Aligned_cols=35 Identities=17% Similarity=0.110 Sum_probs=29.0
Q ss_pred cEEEEE-eCChhhHHHHHHHhhCCCEEEEECCCCCC
Q 007040 163 LVLGIV-GRSASARALATRSLSFKMSVLYFDVPEGK 197 (620)
Q Consensus 163 ktVGII-GlG~IG~~vA~~LkafG~~V~~~dr~~~~ 197 (620)
.+|.|. |-|.||+++|+.|...|++|+..|+....
T Consensus 3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~ 38 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAND 38 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchh
Confidence 345566 46789999999999999999999988643
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.21 E-value=0.26 Score=46.49 Aligned_cols=87 Identities=21% Similarity=0.257 Sum_probs=52.4
Q ss_pred ecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChh--hHhhc
Q 007040 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDE--TIQII 236 (620)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~--T~~lI 236 (620)
+.||++.|-|. +.||+++|+.|...|++|+..+++....... ...+.+......++.+.|=+++. ...++
T Consensus 1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~-------~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~ 73 (254)
T d2gdza1 1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQC-------KAALHEQFEPQKTLFIQCDVADQQQLRDTF 73 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-------HHHHTTTSCGGGEEEEECCTTSHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-------HHHHHHhcCCCcEEEEEeecCCHHHHHHHH
Confidence 35889988877 5599999999999999999999876432210 11222222334555555554432 34454
Q ss_pred CHHHhhccCCCcEEEEcC
Q 007040 237 NAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 237 ~~~~L~~MK~gAiLINvg 254 (620)
.. ..+.+.+=-+|||.+
T Consensus 74 ~~-~~~~~G~iDilVnnA 90 (254)
T d2gdza1 74 RK-VVDHFGRLDILVNNA 90 (254)
T ss_dssp HH-HHHHHSCCCEEEECC
T ss_pred HH-HHHHcCCcCeecccc
Confidence 32 333343334677765
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=84.97 E-value=0.41 Score=46.50 Aligned_cols=36 Identities=17% Similarity=0.076 Sum_probs=32.8
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCC
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGK 197 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~ 197 (620)
.++|.|||.|..|-.+|..|...|.+|++++.+..-
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~i 37 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHI 37 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 578999999999999999999999999999987643
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.97 E-value=0.51 Score=44.29 Aligned_cols=37 Identities=22% Similarity=0.154 Sum_probs=32.7
Q ss_pred eecCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 159 RCRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 159 ~L~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
+|.||++.|.| -+.||+++|+.|...|++|++.+++.
T Consensus 3 ~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~ 40 (245)
T d2ag5a1 3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINE 40 (245)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 47899987775 57899999999999999999999875
|
| >d1hcda_ b.42.5.2 (A:) Histidine-rich actin-binding protein (hisactophilin) {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: beta-Trefoil superfamily: Actin-crosslinking proteins family: Histidine-rich actin-binding protein (hisactophilin) domain: Histidine-rich actin-binding protein (hisactophilin) species: Dictyostelium discoideum [TaxId: 44689]
Probab=84.94 E-value=0.91 Score=38.41 Aligned_cols=75 Identities=11% Similarity=0.053 Sum_probs=53.4
Q ss_pred EEEEEEecCCceEEeeecccccceEEeeeccccCCCccceEEEEecCccccccccccCCceeeecccceEEEe-ec-ccc
Q 007040 508 VVALYARDRPALHISRQRHKGGGWILETMSNVTKRDPAAQFLICKSKDTIGLRSFTAGGKLLQINRRMEFVFA-SH-SFD 585 (620)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~ 585 (620)
-|||++ ..|.||+=+. +|. ++.|.+...+-.+|.+.++..++.||| +-||-|++..-=.+--. +| +.+
T Consensus 42 ~iaLks--~~GkYlsa~~--~g~----l~~~~~~~~~~E~F~ie~~~g~valrs--~nGkylsa~~~g~v~~n~~~~~~~ 111 (118)
T d1hcda_ 42 KVALKT--HCGKYLSIGD--HKQ----VYLSHHLHGDHSLFHLEHHGGKVSIKG--HHHHYISADHHGHVSTKEHHDHDT 111 (118)
T ss_dssp EEEEES--SSSCEEEEEE--TTE----EEEECCCSSSSSSBEEEEETTEEEEEC--STTCEEEECGGGCEEEESSCSSTT
T ss_pred EEEEEe--CCCCEEEecC--CCc----EEEeccCCCCceEEEEEECCCEEEEEe--CCCCEEEEcCCCceeeEcCCCCCC
Confidence 588987 5688998652 332 344667778889999977889999998 57999999654444333 34 345
Q ss_pred cccccee
Q 007040 586 AWESWAI 592 (620)
Q Consensus 586 ~~~~~~~ 592 (620)
.||.|++
T Consensus 112 ~WE~f~i 118 (118)
T d1hcda_ 112 TFEEIII 118 (118)
T ss_dssp CBEEECC
T ss_pred CceeEEC
Confidence 7999874
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=84.86 E-value=0.15 Score=48.72 Aligned_cols=38 Identities=21% Similarity=0.226 Sum_probs=33.7
Q ss_pred eeecCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 158 RRCRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 158 ~~L~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
++|.||++.|.| -+.||+++|+.|...|++|++.+++.
T Consensus 3 ~dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~ 41 (261)
T d1geea_ 3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSK 41 (261)
T ss_dssp GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 368999998887 57799999999999999999999875
|
| >d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Escherichia coli [TaxId: 562]
Probab=84.80 E-value=1.2 Score=43.44 Aligned_cols=66 Identities=12% Similarity=0.159 Sum_probs=48.3
Q ss_pred ecCcEEEEEeC---ChhhHHHHHHHhhCC-CEEEEECCCCCCCCc-------cccCCceecCCHHhhhcCCcEEEEc
Q 007040 160 CRGLVLGIVGR---SASARALATRSLSFK-MSVLYFDVPEGKGKV-------TFPSAARRMDTLNDLLAASDVISLH 225 (620)
Q Consensus 160 L~GktVGIIGl---G~IG~~vA~~LkafG-~~V~~~dr~~~~~~~-------~~~~g~~~~~sL~eLL~~sDvVil~ 225 (620)
+.|++|.++|- +++..+++..+..|| +.|.++.|..-.... ..........++++.+..+|+|...
T Consensus 152 l~~~~i~~vGD~~~~~v~~S~~~~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~ 228 (310)
T d1tuga1 152 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMT 228 (310)
T ss_dssp SSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHTTTCCEEEESCGGGTTTTCSEEEEC
T ss_pred cccceEEEEeccccCcchHHHHHHHHhccCceEEEeCCcccccchhcccccccccceeeeeechhhhccCCceeeec
Confidence 68999999997 778899998899895 789988875422221 0111234567899999999998853
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=84.62 E-value=0.49 Score=42.41 Aligned_cols=89 Identities=8% Similarity=0.018 Sum_probs=54.4
Q ss_pred cCcEEEEE--eCChhhHHHHHHHhhCCCEEEEECCCCCCCCc----cccCCceecC--------C----HHhh----hcC
Q 007040 161 RGLVLGIV--GRSASARALATRSLSFKMSVLYFDVPEGKGKV----TFPSAARRMD--------T----LNDL----LAA 218 (620)
Q Consensus 161 ~GktVGII--GlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~----~~~~g~~~~~--------s----L~eL----L~~ 218 (620)
.|.++.|+ |.|.+|....+.++.+|++|++.-++....+. ....|..... . +.++ -..
T Consensus 28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~g~~ 107 (189)
T d1gu7a2 28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGE 107 (189)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCC
T ss_pred CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhhccCC
Confidence 57888888 67999999999999999999988665433220 0111211110 1 1111 123
Q ss_pred CcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCC
Q 007040 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 219 sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgR 255 (620)
.|+|+-++. .+.+ ...+..|+++..+|.+|.
T Consensus 108 vdvv~D~vg-~~~~-----~~~~~~l~~~G~~v~~G~ 138 (189)
T d1gu7a2 108 AKLALNCVG-GKSS-----TGIARKLNNNGLMLTYGG 138 (189)
T ss_dssp EEEEEESSC-HHHH-----HHHHHTSCTTCEEEECCC
T ss_pred ceEEEECCC-cchh-----hhhhhhhcCCcEEEEECC
Confidence 677777664 1111 345677888888888753
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=84.45 E-value=0.3 Score=46.30 Aligned_cols=88 Identities=20% Similarity=0.119 Sum_probs=53.9
Q ss_pred eecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhh-hcCCcEEEEcccCChh--hHh
Q 007040 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDL-LAASDVISLHCAVTDE--TIQ 234 (620)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eL-L~~sDvVil~lPlT~~--T~~ 234 (620)
+|.||++.|.|. +.||+++|+.|...|++|+..+++....+.. ...+.+. ....++..+.+-.+.. ...
T Consensus 2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~-------~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~ 74 (264)
T d1spxa_ 2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEET-------RQQILAAGVSEQNVNSVVADVTTDAGQDE 74 (264)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-------HHHHHHTTCCGGGEEEEECCTTSHHHHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-------HHHHHhcCCCcCceEEEEccCCCHHHHHH
Confidence 478998888864 7899999999999999999999875332200 0112111 1223466666655432 344
Q ss_pred hcCHHHhhccCCCcEEEEcC
Q 007040 235 IINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 235 lI~~~~L~~MK~gAiLINvg 254 (620)
+++ ...+.+.+=-+|||.+
T Consensus 75 ~~~-~~~~~~g~iDilvnnA 93 (264)
T d1spxa_ 75 ILS-TTLGKFGKLDILVNNA 93 (264)
T ss_dssp HHH-HHHHHHSCCCEEEECC
T ss_pred HHH-HHHHHhCCCCEeeccc
Confidence 443 3344444445777764
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.04 E-value=0.65 Score=44.34 Aligned_cols=34 Identities=15% Similarity=-0.142 Sum_probs=28.2
Q ss_pred cEE-EEE-eCChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 163 LVL-GIV-GRSASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 163 ktV-GII-GlG~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
|+| .|. |.|-||+.+++.|...|++|+++|+...
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~ 36 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS 36 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence 456 455 5678999999999999999999998653
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=83.96 E-value=0.36 Score=41.69 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=29.7
Q ss_pred EEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCC
Q 007040 164 VLGIVGRSASARALATRSLSFKM-SVLYFDVPEG 196 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~ 196 (620)
+|.|||.|..|-..|..|+..|+ +|++++.+..
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~ 35 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDH 35 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSS
T ss_pred CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCC
Confidence 48999999999999999999997 6999998653
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.72 E-value=0.56 Score=42.18 Aligned_cols=35 Identities=26% Similarity=0.253 Sum_probs=31.5
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
..+|.|||.|.-|-..|..|...|++|+++..+..
T Consensus 5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r 39 (449)
T d2dw4a2 5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR 39 (449)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 45699999999999999999999999999987653
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=83.48 E-value=0.28 Score=46.34 Aligned_cols=82 Identities=16% Similarity=0.246 Sum_probs=47.5
Q ss_pred cEEEEE-e-CChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChh--hHhhcCH
Q 007040 163 LVLGIV-G-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDE--TIQIINA 238 (620)
Q Consensus 163 ktVGII-G-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~--T~~lI~~ 238 (620)
|+|.|| | .+.||+++|+.|...|++|+..+++....+. ....+.+. ..+++.+.|=.++. ...++..
T Consensus 1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~-------~~~~i~~~--g~~~~~~~~Dv~~~~~v~~~~~~ 71 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKA-------VASEINQA--GGHAVAVKVDVSDRDQVFAAVEQ 71 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-------HHHHHHHT--TCCEEEEECCTTSHHHHHHHHHH
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHH-------HHHHHHhc--CCcEEEEEeeCCCHHHHHHHHHH
Confidence 355544 5 4569999999999999999999987532210 01122221 23556555555442 3444433
Q ss_pred HHhhccCCCcEEEEcC
Q 007040 239 ECLQHIKPGAFLVNTG 254 (620)
Q Consensus 239 ~~L~~MK~gAiLINvg 254 (620)
..+.+.+=-+|||.+
T Consensus 72 -~~~~~g~iDilVnnA 86 (255)
T d1gega_ 72 -ARKTLGGFDVIVNNA 86 (255)
T ss_dssp -HHHHTTCCCEEEECC
T ss_pred -HHHHhCCccEEEecc
Confidence 444454444677654
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=83.37 E-value=0.2 Score=44.24 Aligned_cols=37 Identities=3% Similarity=-0.158 Sum_probs=31.5
Q ss_pred cCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCCCC
Q 007040 161 RGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPEGK 197 (620)
Q Consensus 161 ~GktVGIIGlG-~IG~~vA~~LkafG~~V~~~dr~~~~ 197 (620)
.|.+|.|+|.| .+|..+++.++.+|++|++.+++..+
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k 65 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQK 65 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHH
T ss_pred CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHH
Confidence 48899999555 59999999999999999999987643
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=83.36 E-value=0.23 Score=43.78 Aligned_cols=101 Identities=14% Similarity=0.167 Sum_probs=58.9
Q ss_pred CcEEEEEeC-ChhhHHHHHHHhhCCC-------EEEEECCCCCCCC------------ccccCCceecCCHHhhhcCCcE
Q 007040 162 GLVLGIVGR-SASARALATRSLSFKM-------SVLYFDVPEGKGK------------VTFPSAARRMDTLNDLLAASDV 221 (620)
Q Consensus 162 GktVGIIGl-G~IG~~vA~~LkafG~-------~V~~~dr~~~~~~------------~~~~~g~~~~~sL~eLL~~sDv 221 (620)
-++|.|||. |.+|+.+|-.|...++ ....++....... ...........+..+.+++||+
T Consensus 4 p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~adv 83 (154)
T d1y7ta1 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADY 83 (154)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhcccccE
Confidence 357999996 9999999999985432 2333333221110 0111223345678899999999
Q ss_pred EEEcccCC--hh-hH-hhc--CH-------HHhhc-cCCCcEEEEcCCChhhcHHHH
Q 007040 222 ISLHCAVT--DE-TI-QII--NA-------ECLQH-IKPGAFLVNTGSSQLLDDCAV 264 (620)
Q Consensus 222 Vil~lPlT--~~-T~-~lI--~~-------~~L~~-MK~gAiLINvgRG~vVDe~AL 264 (620)
|+++.-.. +. ++ .++ |. ..+.. .+++++++.++. .+|.-..
T Consensus 84 ViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN--PvDv~t~ 138 (154)
T d1y7ta1 84 ALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN--PANTNAL 138 (154)
T ss_dssp EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHHH
T ss_pred EEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC--cHHHHHH
Confidence 99987332 21 22 122 11 23333 467888888865 4665553
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=82.93 E-value=0.27 Score=43.97 Aligned_cols=39 Identities=5% Similarity=-0.123 Sum_probs=33.4
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCC
Q 007040 161 RGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGK 199 (620)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~ 199 (620)
.|.+|.|-| .|.+|....+.++.+|++|++..++..+.+
T Consensus 23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~ 62 (167)
T d1tt7a2 23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAAD 62 (167)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHH
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHH
Confidence 566788888 699999999999999999999988765543
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=82.90 E-value=0.52 Score=43.79 Aligned_cols=36 Identities=17% Similarity=0.005 Sum_probs=32.9
Q ss_pred ecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
|.||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~ 38 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE 38 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 68999999986 5699999999999999999999875
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=82.73 E-value=0.99 Score=43.31 Aligned_cols=33 Identities=12% Similarity=0.064 Sum_probs=28.5
Q ss_pred cEEEEE-eCChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 163 LVLGIV-GRSASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 163 ktVGII-GlG~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
|+|.|+ |.|-||+.+++.|...|++|+++|+..
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~ 34 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLC 34 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence 457777 579999999999999999999998644
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=82.64 E-value=0.33 Score=43.89 Aligned_cols=102 Identities=16% Similarity=0.183 Sum_probs=59.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCH-----HhhhcCCcEEEEcccCChhhHhhc-
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTL-----NDLLAASDVISLHCAVTDETIQII- 236 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL-----~eLL~~sDvVil~lPlT~~T~~lI- 236 (620)
.+|||=|||+||+.+.|.|..-+.+|.+.+... ..+ ... ....+++. .++-...|.+++ ......++
T Consensus 1 ikigINGfGRIGR~~~R~l~~~~i~iv~INd~~-~~~-~~a-yLl~yDS~hG~~~~~v~~~~~~l~i----~g~~I~~~~ 73 (168)
T d2g82a1 1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLT-DNK-TLA-HLLKYDSIYHRFPGEVAYDDQYLYV----DGKAIRATA 73 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS-CHH-HHH-HHHHCCTTTCSCSSCEEECSSEEEE----TTEEEEEEC
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEECCCc-chh-hhh-heeecccccCccccccccccceeEe----cceeEEEEe
Confidence 379999999999999999987789988887532 211 000 00001111 112223444443 11222233
Q ss_pred --CHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcC
Q 007040 237 --NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDG 271 (620)
Q Consensus 237 --~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G 271 (620)
+.+.+..-+-|.-+|=-+.|.-.+.+.+...|+.|
T Consensus 74 ~~~p~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~g 110 (168)
T d2g82a1 74 VKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGG 110 (168)
T ss_dssp CSSGGGCCTGGGTEEEEEECSSSCCBHHHHTHHHHTT
T ss_pred cCChHHCcccccCCceeEeccccccchHHhhhhhccc
Confidence 23344444446666666788888888888888865
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=82.41 E-value=0.68 Score=41.80 Aligned_cols=103 Identities=12% Similarity=0.031 Sum_probs=64.9
Q ss_pred CcEEEEEeC-ChhhHHHHHHHhh---CCC----EEEEECCCCCCCC----------ccc--cCCceecCCHHhhhcCCcE
Q 007040 162 GLVLGIVGR-SASARALATRSLS---FKM----SVLYFDVPEGKGK----------VTF--PSAARRMDTLNDLLAASDV 221 (620)
Q Consensus 162 GktVGIIGl-G~IG~~vA~~Lka---fG~----~V~~~dr~~~~~~----------~~~--~~g~~~~~sL~eLL~~sDv 221 (620)
-.+|.|+|. |.||+.++-+|.. ||. .+..+|....... ..+ ........+..+.+..+|+
T Consensus 24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aDv 103 (175)
T d7mdha1 24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDW 103 (175)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCce
Confidence 457999996 9999999999874 553 6777786542111 011 1123445788899999999
Q ss_pred EEEcccCC--h---------hhHhhcC--HHHhhc-cCCCcEEEEcCCChhhcHHHHHH
Q 007040 222 ISLHCAVT--D---------ETIQIIN--AECLQH-IKPGAFLVNTGSSQLLDDCAVKQ 266 (620)
Q Consensus 222 Vil~lPlT--~---------~T~~lI~--~~~L~~-MK~gAiLINvgRG~vVDe~AL~~ 266 (620)
|++..-.. + .+..++- ...+.. .+++++++=++. .+|..+++.
T Consensus 104 Vvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~N--Pvd~~t~ia 160 (175)
T d7mdha1 104 ALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN--PCNTNALIC 160 (175)
T ss_dssp EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHHHHH
T ss_pred EEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecC--cHHHHHHHH
Confidence 99987332 1 1222221 123444 466787777765 488777653
|
| >d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: L-alanine dehydrogenase-like domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=81.61 E-value=1.7 Score=39.79 Aligned_cols=97 Identities=8% Similarity=0.011 Sum_probs=69.4
Q ss_pred HHHHHHHhhCCCEEEEECCCCCCCC---cccc-CCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEE
Q 007040 175 RALATRSLSFKMSVLYFDVPEGKGK---VTFP-SAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFL 250 (620)
Q Consensus 175 ~~vA~~LkafG~~V~~~dr~~~~~~---~~~~-~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiL 250 (620)
=..++.|...|++|++=.-...... ..+. .|+....+.++++ ++|+|+..-|.++ +.++.||+|.++
T Consensus 20 P~~vkkl~~~G~~V~VE~gaG~~a~fsD~~Y~~aGa~i~~~~~~~~-~~diilkv~~p~~--------~e~~~lk~~~~l 90 (193)
T d1pjca2 20 PSSVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAW-SREMVVKVKEPLP--------AEYDLMQKDQLL 90 (193)
T ss_dssp HHHHHHHHTTTCEEEEETTTTGGGTCCHHHHHHHTCEEESSHHHHH-TSSEEECSSCCCG--------GGGGGCCTTCEE
T ss_pred HHHHHHHHHCCCEEEEEcCcccccCCCHHHHHhhcceeeecccccc-ccceEEEeccCCH--------HHHHhhhcCceE
Confidence 4567888889999998754332211 2222 2555566777777 5899987776554 368999999999
Q ss_pred EEcCCChhhcHHHHHHHHHcCCcceeEeecCC
Q 007040 251 VNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE 282 (620)
Q Consensus 251 INvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E 282 (620)
|-.--. ....+++++|.+.+|...++|...
T Consensus 91 i~~l~p--~~~~ell~~l~~~~it~~s~E~ip 120 (193)
T d1pjca2 91 FTYLHL--AAARELTEQLMRVGLTAIAYETVE 120 (193)
T ss_dssp EECCCG--GGCHHHHHHHHHHTCEEEEGGGCC
T ss_pred EEecCc--ccchHHHHHHHHcCCEEEEeeecc
Confidence 987553 456789999999999988887654
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=81.46 E-value=0.15 Score=48.21 Aligned_cols=36 Identities=19% Similarity=0.005 Sum_probs=30.5
Q ss_pred eecCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCC
Q 007040 159 RCRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVP 194 (620)
Q Consensus 159 ~L~GktVGIIGlG-~IG~~vA~~LkafG~~V~~~dr~ 194 (620)
.|.||++.|.|-+ .||+++|+.|...|++|++.+++
T Consensus 3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~ 39 (259)
T d1ja9a_ 3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGS 39 (259)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCC
Confidence 4899999988765 49999999999999999875443
|
| >d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=81.07 E-value=0.53 Score=42.67 Aligned_cols=31 Identities=16% Similarity=0.112 Sum_probs=25.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhC---CCEEEEECC
Q 007040 163 LVLGIVGRSASARALATRSLSF---KMSVLYFDV 193 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf---G~~V~~~dr 193 (620)
++|||=|||+||+.+.|.+... .++|.+.+-
T Consensus 1 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd 34 (172)
T d1rm4a1 1 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVIND 34 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEEcC
Confidence 4799999999999999987743 367777764
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=81.00 E-value=2.3 Score=39.05 Aligned_cols=31 Identities=16% Similarity=0.138 Sum_probs=29.4
Q ss_pred EEEEeCChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 165 LGIVGRSASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 165 VGIIGlG~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
|.|||.|.+|..+|..|...|++|+++++..
T Consensus 6 vvIIGaGi~Gls~A~~La~~G~~V~viE~~~ 36 (281)
T d2gf3a1 6 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD 36 (281)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 8899999999999999999999999999864
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=80.81 E-value=0.33 Score=43.88 Aligned_cols=40 Identities=5% Similarity=-0.155 Sum_probs=34.4
Q ss_pred ecCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCC
Q 007040 160 CRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGK 199 (620)
Q Consensus 160 L~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~ 199 (620)
..|.+|.|.| .|.+|....+.++..|++|++..++.....
T Consensus 30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~ 70 (176)
T d1xa0a2 30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHD 70 (176)
T ss_dssp GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHH
T ss_pred CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHH
Confidence 4688999998 699999999999999999999988765443
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=80.76 E-value=0.56 Score=43.20 Aligned_cols=31 Identities=13% Similarity=0.091 Sum_probs=29.5
Q ss_pred EEEEeCChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 165 LGIVGRSASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 165 VGIIGlG~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
|.|||.|.+|.++|..|...|.+|+++++..
T Consensus 7 vvIIGaGi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 7 AVVIGGGIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 8999999999999999999999999999864
|
| >d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]
Probab=80.72 E-value=0.38 Score=43.62 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=26.8
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECC
Q 007040 164 VLGIVGRSASARALATRSLSFKMSVLYFDV 193 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG~~V~~~dr 193 (620)
+|||=|||+||+.+.+.+...+.+|.+.+-
T Consensus 2 kIgINGfGRIGR~~~R~~~~~~~~ivaINd 31 (169)
T d1dssg1 2 KIGINGFGRIGRLVLRAALEMGAQVVAVND 31 (169)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEECC
Confidence 699999999999999999888888888764
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.71 E-value=0.8 Score=41.36 Aligned_cols=33 Identities=15% Similarity=0.103 Sum_probs=29.1
Q ss_pred EEEEEeCChhhHHHHHHHh--hCCCEEEEECCCCC
Q 007040 164 VLGIVGRSASARALATRSL--SFKMSVLYFDVPEG 196 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~Lk--afG~~V~~~dr~~~ 196 (620)
+|+|||.|..|...|..|+ .+|++|++|+....
T Consensus 3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~ 37 (230)
T d1cjca2 3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV 37 (230)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 6999999999999999885 47899999998763
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.67 E-value=1.7 Score=41.24 Aligned_cols=64 Identities=16% Similarity=0.007 Sum_probs=41.4
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCccccC-------CceecCCHHhhhcCCcEEEEcc
Q 007040 163 LVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPS-------AARRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~-------g~~~~~sL~eLL~~sDvVil~l 226 (620)
|+|.|.| .|-||+.+++.|...|++|+++|+........... .....+.++.++.++|+|+-+.
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~VihlA 73 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLA 73 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCCCCSEEEECC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHHHhcCCCceEEEehHHHHHHHcCCCEEEECc
Confidence 5677775 68899999999999999999998643222111100 0112234556667899876443
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=80.53 E-value=0.83 Score=41.35 Aligned_cols=34 Identities=12% Similarity=0.079 Sum_probs=30.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCC
Q 007040 163 LVLGIVGRSASARALATRSLSFKM-SVLYFDVPEG 196 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~ 196 (620)
.+|.|||.|..|..+|..|+..|. .|.++++...
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~ 36 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE 36 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 369999999999999999999996 9999998764
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=80.41 E-value=0.68 Score=43.55 Aligned_cols=36 Identities=19% Similarity=0.109 Sum_probs=33.2
Q ss_pred ecCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 160 CRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 160 L~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
|.||++.|-| -+.||+++|+.|...|++|+..+++.
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~ 39 (248)
T d2d1ya1 3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRP 39 (248)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 7899999997 67899999999999999999999875
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=80.16 E-value=0.57 Score=44.14 Aligned_cols=36 Identities=14% Similarity=0.167 Sum_probs=31.5
Q ss_pred ecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCC
Q 007040 160 CRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 160 L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
|.||++.|-|.+. ||+++|+.|...|++|+..+++.
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~ 38 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD 38 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 6789888876654 99999999999999999999875
|
| >d1js1x2 c.78.1.1 (X:164-324) Transcarbamylase-like protein {Bacteroides fragilis [TaxId: 817]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Transcarbamylase-like protein species: Bacteroides fragilis [TaxId: 817]
Probab=80.05 E-value=2.4 Score=37.58 Aligned_cols=52 Identities=12% Similarity=-0.018 Sum_probs=41.3
Q ss_pred hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEE
Q 007040 173 SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISL 224 (620)
Q Consensus 173 IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil 224 (620)
+..+.+..|..||++|.++.|..-.....+..++....++.+.+..||+|..
T Consensus 21 Va~S~i~~l~~~G~~v~~~~P~~~~p~~~~~~~~~~~~d~~eav~~aDvI~t 72 (161)
T d1js1x2 21 VPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYA 72 (161)
T ss_dssp HHHHHHHHHHTSSSEEEEECCTTCCCCHHHHTTCEEESCHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHcCCEEEEECCcccCCCHHHhCCceEecCHHHHhCCCcceee
Confidence 7889999999999999999987643332333455666799999999999986
|